Query 026534
Match_columns 237
No_of_seqs 182 out of 2266
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 09:17:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 5.6E-30 1.2E-34 215.3 20.7 135 1-183 139-279 (346)
2 KOG0148 Apoptosis-promoting RN 100.0 1.7E-28 3.7E-33 191.4 15.0 145 1-183 94-242 (321)
3 TIGR01645 half-pint poly-U bin 99.9 1.5E-25 3.3E-30 198.2 16.1 145 1-182 139-287 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 8.4E-25 1.8E-29 186.4 18.7 181 1-181 121-351 (352)
5 TIGR01648 hnRNP-R-Q heterogene 99.9 1.9E-23 4.1E-28 184.6 20.6 127 5-182 176-310 (578)
6 KOG0117 Heterogeneous nuclear 99.9 1.4E-23 3E-28 174.1 17.1 175 1-183 115-335 (506)
7 TIGR01622 SF-CC1 splicing fact 99.9 1.6E-23 3.4E-28 184.5 17.2 142 1-178 121-265 (457)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.9E-23 4E-28 178.2 16.2 132 1-180 35-172 (352)
9 KOG0144 RNA-binding protein CU 99.9 4.5E-24 9.8E-29 176.2 9.5 136 1-184 66-211 (510)
10 KOG0145 RNA-binding protein EL 99.9 2.1E-23 4.5E-28 162.3 10.4 132 1-180 73-210 (360)
11 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-21 2.3E-26 175.1 17.8 157 4-179 216-375 (509)
12 KOG0131 Splicing factor 3b, su 99.9 1.5E-22 3.2E-27 149.8 9.9 136 1-183 41-181 (203)
13 TIGR01628 PABP-1234 polyadenyl 99.9 3.6E-22 7.8E-27 180.0 14.6 135 1-182 32-170 (562)
14 PLN03134 glycine-rich RNA-bind 99.9 8.1E-21 1.7E-25 141.1 16.2 85 98-182 31-117 (144)
15 TIGR01628 PABP-1234 polyadenyl 99.9 2E-21 4.3E-26 175.2 12.2 145 6-181 214-366 (562)
16 KOG4205 RNA-binding protein mu 99.9 4.4E-21 9.5E-26 157.4 11.7 143 1-185 38-182 (311)
17 KOG0127 Nucleolar protein fibr 99.8 2.6E-20 5.5E-25 158.2 15.3 181 1-182 149-381 (678)
18 KOG0127 Nucleolar protein fibr 99.8 3E-20 6.5E-25 157.8 12.6 156 1-181 37-198 (678)
19 TIGR01648 hnRNP-R-Q heterogene 99.8 2.8E-20 6E-25 164.6 12.7 125 1-180 90-223 (578)
20 KOG0124 Polypyrimidine tract-b 99.8 5.5E-20 1.2E-24 149.5 10.0 141 3-180 147-291 (544)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 4.9E-19 1.1E-23 156.5 16.7 156 10-179 312-480 (481)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1.5E-18 3.3E-23 154.8 16.5 157 1-177 327-500 (509)
23 KOG0145 RNA-binding protein EL 99.8 6.7E-18 1.4E-22 131.7 15.9 179 1-179 159-358 (360)
24 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 3.9E-18 8.5E-23 150.8 16.5 132 9-180 36-175 (481)
25 KOG0110 RNA-binding protein (R 99.8 9.9E-19 2.2E-23 152.7 10.1 133 9-180 558-694 (725)
26 KOG0123 Polyadenylate-binding 99.8 2.8E-18 6.2E-23 145.4 12.4 125 1-184 30-158 (369)
27 KOG0147 Transcriptional coacti 99.8 5.8E-19 1.2E-23 150.3 7.5 147 1-181 211-360 (549)
28 TIGR01622 SF-CC1 splicing fact 99.7 1.4E-16 2.9E-21 140.5 16.4 173 1-177 218-446 (457)
29 KOG0109 RNA-binding protein LA 99.7 1.5E-16 3.2E-21 126.0 8.9 117 10-184 35-155 (346)
30 KOG0149 Predicted RNA-binding 99.7 1.4E-16 3E-21 122.8 7.5 79 99-177 10-89 (247)
31 TIGR01659 sex-lethal sex-letha 99.7 9.1E-16 2E-20 129.5 11.0 83 97-179 103-187 (346)
32 KOG0105 Alternative splicing f 99.6 2.6E-15 5.5E-20 111.8 10.3 76 99-177 4-81 (241)
33 KOG0122 Translation initiation 99.6 7.3E-15 1.6E-19 113.9 11.1 82 98-179 186-269 (270)
34 KOG0107 Alternative splicing f 99.6 2.4E-14 5.1E-19 105.8 13.1 77 100-181 9-87 (195)
35 KOG0125 Ataxin 2-binding prote 99.6 5.9E-15 1.3E-19 118.8 9.6 83 95-179 90-174 (376)
36 PF00076 RRM_1: RNA recognitio 99.6 7E-15 1.5E-19 95.6 7.6 68 104-172 1-70 (70)
37 KOG0123 Polyadenylate-binding 99.6 1.5E-14 3.2E-19 122.9 9.9 129 10-180 115-247 (369)
38 KOG0111 Cyclophilin-type pepti 99.6 6E-15 1.3E-19 112.7 5.9 84 98-181 7-92 (298)
39 KOG0121 Nuclear cap-binding pr 99.5 2.4E-14 5.2E-19 100.5 8.0 82 98-179 33-116 (153)
40 KOG0113 U1 small nuclear ribon 99.5 2.8E-13 6.1E-18 107.9 14.2 85 98-182 98-184 (335)
41 KOG4207 Predicted splicing fac 99.5 1.8E-13 3.9E-18 103.7 11.9 83 95-177 7-91 (256)
42 PLN03120 nucleic acid binding 99.5 1E-13 2.2E-18 110.4 10.8 76 101-179 4-80 (260)
43 KOG0146 RNA-binding protein ET 99.5 6.2E-14 1.3E-18 110.1 8.3 87 97-183 281-369 (371)
44 PF14259 RRM_6: RNA recognitio 99.5 1.8E-13 4E-18 89.1 7.9 68 104-172 1-70 (70)
45 TIGR01645 half-pint poly-U bin 99.5 1.9E-13 4.2E-18 121.7 10.4 80 98-177 104-185 (612)
46 KOG4211 Splicing factor hnRNP- 99.5 1.8E-12 3.8E-17 109.8 14.3 135 4-176 42-179 (510)
47 KOG0130 RNA-binding protein RB 99.5 2.9E-13 6.2E-18 95.9 7.8 83 97-179 68-152 (170)
48 KOG4206 Spliceosomal protein s 99.5 2.1E-12 4.5E-17 99.6 13.0 166 6-177 47-220 (221)
49 PLN03121 nucleic acid binding 99.4 7.7E-13 1.7E-17 103.8 10.4 76 99-177 3-79 (243)
50 KOG0126 Predicted RNA-binding 99.4 1.2E-14 2.7E-19 107.9 0.1 78 99-176 33-112 (219)
51 KOG0131 Splicing factor 3b, su 99.4 2.3E-13 5.1E-18 101.2 6.2 80 98-177 6-87 (203)
52 KOG0148 Apoptosis-promoting RN 99.4 4.7E-13 1E-17 105.3 8.0 80 101-180 62-143 (321)
53 PLN03213 repressor of silencin 99.4 9E-13 2E-17 111.6 9.2 77 98-178 7-87 (759)
54 KOG0116 RasGAP SH3 binding pro 99.4 5.6E-12 1.2E-16 107.7 13.7 82 101-182 288-370 (419)
55 KOG4212 RNA-binding protein hn 99.4 4.9E-12 1.1E-16 105.7 12.8 79 99-178 42-123 (608)
56 KOG0105 Alternative splicing f 99.4 4.5E-11 9.7E-16 89.4 16.1 126 10-164 44-171 (241)
57 smart00362 RRM_2 RNA recogniti 99.4 3.1E-12 6.7E-17 82.8 8.9 70 103-174 1-72 (72)
58 KOG0144 RNA-binding protein CU 99.4 1.1E-12 2.3E-17 109.4 7.9 85 98-182 31-120 (510)
59 KOG0147 Transcriptional coacti 99.4 2.8E-12 6.1E-17 109.9 10.5 169 1-176 310-525 (549)
60 KOG0117 Heterogeneous nuclear 99.3 1.1E-11 2.4E-16 103.9 11.6 79 99-177 81-162 (506)
61 smart00360 RRM RNA recognition 99.3 6E-12 1.3E-16 81.1 8.0 69 106-174 1-71 (71)
62 KOG0108 mRNA cleavage and poly 99.3 4E-12 8.6E-17 109.2 8.3 82 102-183 19-102 (435)
63 COG0724 RNA-binding proteins ( 99.3 1E-11 2.2E-16 101.4 9.7 78 101-178 115-194 (306)
64 KOG0114 Predicted RNA-binding 99.3 1.5E-11 3.3E-16 83.3 8.5 79 98-179 15-95 (124)
65 KOG0109 RNA-binding protein LA 99.3 4.3E-12 9.3E-17 100.9 5.9 70 102-179 3-74 (346)
66 cd00590 RRM RRM (RNA recogniti 99.3 3.6E-11 7.7E-16 78.1 9.3 72 103-175 1-74 (74)
67 KOG1190 Polypyrimidine tract-b 99.2 2.1E-10 4.6E-15 95.3 13.0 150 12-178 336-490 (492)
68 KOG0106 Alternative splicing f 99.2 5.9E-11 1.3E-15 92.3 6.6 130 11-176 35-168 (216)
69 KOG4205 RNA-binding protein mu 99.2 4.1E-11 8.9E-16 98.8 5.7 84 100-183 5-89 (311)
70 KOG0153 Predicted RNA-binding 99.1 2.2E-10 4.8E-15 93.4 8.9 78 95-178 222-302 (377)
71 KOG0146 RNA-binding protein ET 99.1 9.7E-11 2.1E-15 92.3 5.8 83 100-183 18-105 (371)
72 smart00361 RRM_1 RNA recogniti 99.1 3E-10 6.4E-15 73.9 7.3 59 115-173 2-69 (70)
73 KOG4212 RNA-binding protein hn 99.1 1.8E-09 3.9E-14 90.6 13.6 169 7-176 82-291 (608)
74 KOG0415 Predicted peptidyl pro 99.1 1.4E-10 3E-15 94.8 6.2 83 98-180 236-320 (479)
75 PF13893 RRM_5: RNA recognitio 99.1 4.7E-10 1E-14 69.6 7.2 54 118-176 1-56 (56)
76 KOG1457 RNA binding protein (c 99.1 2.4E-09 5.2E-14 82.5 12.3 151 8-162 74-267 (284)
77 KOG0110 RNA-binding protein (R 99.1 7.7E-10 1.7E-14 97.7 10.8 163 14-177 424-596 (725)
78 KOG0120 Splicing factor U2AF, 99.1 3.9E-10 8.5E-15 97.7 8.4 153 1-177 321-490 (500)
79 KOG0124 Polypyrimidine tract-b 99.1 1.2E-10 2.5E-15 95.6 4.5 79 100-178 112-192 (544)
80 KOG0120 Splicing factor U2AF, 99.1 3E-10 6.5E-15 98.5 7.2 150 7-181 219-371 (500)
81 KOG4211 Splicing factor hnRNP- 99.1 8.4E-09 1.8E-13 87.9 15.5 72 101-174 281-353 (510)
82 PLN03134 glycine-rich RNA-bind 99.1 2.9E-10 6.4E-15 84.5 5.9 50 1-50 66-117 (144)
83 KOG0132 RNA polymerase II C-te 99.0 1.8E-09 3.8E-14 96.3 10.6 77 98-180 418-496 (894)
84 KOG4208 Nucleolar RNA-binding 99.0 1.7E-09 3.7E-14 82.4 8.2 82 98-179 46-130 (214)
85 KOG0226 RNA-binding proteins [ 98.9 1.4E-09 3E-14 85.3 5.6 135 3-180 133-271 (290)
86 KOG4206 Spliceosomal protein s 98.9 5E-09 1.1E-13 81.1 8.1 79 100-181 8-92 (221)
87 smart00361 RRM_1 RNA recogniti 98.9 3.3E-09 7.1E-14 69.0 4.7 40 2-41 26-69 (70)
88 KOG4661 Hsp27-ERE-TATA-binding 98.9 1.4E-08 3E-13 88.0 9.5 82 98-179 402-485 (940)
89 KOG1365 RNA-binding protein Fu 98.9 3.2E-09 7E-14 87.7 5.4 151 6-177 201-360 (508)
90 KOG4210 Nuclear localization s 98.9 9.7E-09 2.1E-13 84.5 8.3 140 5-182 124-267 (285)
91 KOG4207 Predicted splicing fac 98.9 1.9E-09 4.1E-14 82.1 3.5 45 1-45 45-91 (256)
92 KOG0149 Predicted RNA-binding 98.8 1.8E-09 3.9E-14 83.9 2.9 46 1-46 44-90 (247)
93 COG0724 RNA-binding proteins ( 98.8 5.6E-08 1.2E-12 79.2 10.0 112 1-138 147-262 (306)
94 KOG0533 RRM motif-containing p 98.7 5.2E-08 1.1E-12 77.6 8.4 83 98-181 80-164 (243)
95 KOG0111 Cyclophilin-type pepti 98.7 1.4E-08 2.9E-13 78.2 3.6 49 1-49 42-92 (298)
96 KOG1548 Transcription elongati 98.6 1.5E-06 3.3E-11 71.3 13.2 154 8-177 180-350 (382)
97 KOG0106 Alternative splicing f 98.6 7E-08 1.5E-12 75.3 5.1 70 102-179 2-73 (216)
98 KOG0113 U1 small nuclear ribon 98.5 9.6E-08 2.1E-12 76.7 4.5 47 1-47 133-181 (335)
99 KOG4209 Splicing factor RNPS1, 98.5 4.7E-07 1E-11 72.3 8.2 83 97-179 97-180 (231)
100 KOG4208 Nucleolar RNA-binding 98.5 1.3E-07 2.8E-12 72.3 4.2 46 2-47 83-130 (214)
101 KOG1456 Heterogeneous nuclear 98.4 6.9E-06 1.5E-10 68.2 13.1 141 11-164 325-468 (494)
102 KOG0126 Predicted RNA-binding 98.4 6.3E-08 1.4E-12 72.5 1.1 47 1-47 67-115 (219)
103 KOG4660 Protein Mei2, essentia 98.4 2.5E-07 5.5E-12 80.1 4.0 70 98-172 72-143 (549)
104 KOG1995 Conserved Zn-finger pr 98.4 2.5E-06 5.3E-11 70.5 9.4 84 98-181 63-156 (351)
105 PF13893 RRM_5: RNA recognitio 98.4 9E-07 1.9E-11 54.7 5.1 34 11-44 21-56 (56)
106 KOG1456 Heterogeneous nuclear 98.4 2.8E-05 6.1E-10 64.7 14.8 124 11-180 67-200 (494)
107 KOG1457 RNA binding protein (c 98.3 6.1E-06 1.3E-10 64.0 9.8 88 98-185 31-124 (284)
108 KOG0108 mRNA cleavage and poly 98.3 9.2E-07 2E-11 76.5 4.7 49 1-49 50-100 (435)
109 KOG1190 Polypyrimidine tract-b 98.3 2.6E-05 5.6E-10 65.5 12.9 73 101-178 297-372 (492)
110 KOG0129 Predicted RNA-binding 98.3 1.4E-05 3E-10 69.1 11.5 66 97-162 366-432 (520)
111 KOG4454 RNA binding protein (R 98.3 5.4E-07 1.2E-11 69.5 2.7 75 98-174 6-82 (267)
112 KOG1548 Transcription elongati 98.3 5.2E-06 1.1E-10 68.2 8.4 80 98-178 131-220 (382)
113 smart00360 RRM RNA recognition 98.3 1.7E-06 3.7E-11 55.1 4.6 41 2-42 29-71 (71)
114 PF14259 RRM_6: RNA recognitio 98.3 1.3E-06 2.8E-11 56.4 4.1 38 2-40 31-70 (70)
115 PF00076 RRM_1: RNA recognitio 98.2 1.2E-06 2.6E-11 56.3 3.7 35 6-40 34-70 (70)
116 KOG1365 RNA-binding protein Fu 98.2 6.5E-06 1.4E-10 68.6 8.4 124 7-164 98-227 (508)
117 KOG0151 Predicted splicing reg 98.2 5.6E-06 1.2E-10 73.8 7.7 81 98-178 171-256 (877)
118 KOG0125 Ataxin 2-binding prote 98.2 1.4E-06 3E-11 71.0 3.6 41 8-48 133-175 (376)
119 KOG4307 RNA binding protein RB 98.2 5.9E-06 1.3E-10 73.5 7.6 162 3-175 344-510 (944)
120 PF04059 RRM_2: RNA recognitio 98.2 1.9E-05 4.1E-10 54.2 8.5 76 102-177 2-85 (97)
121 KOG0128 RNA-binding protein SA 98.1 1.2E-06 2.7E-11 79.4 2.9 109 5-178 703-814 (881)
122 KOG0226 RNA-binding proteins [ 98.1 7.9E-07 1.7E-11 70.0 1.2 48 1-48 222-271 (290)
123 KOG0107 Alternative splicing f 98.1 2.6E-06 5.7E-11 63.6 3.4 41 9-49 45-87 (195)
124 KOG0130 RNA-binding protein RB 98.0 4E-06 8.8E-11 59.9 3.2 46 3-48 106-153 (170)
125 PLN03120 nucleic acid binding 98.0 1.3E-05 2.8E-10 64.4 5.3 43 2-47 37-80 (260)
126 KOG4849 mRNA cleavage factor I 98.0 2.6E-05 5.7E-10 64.3 7.0 72 102-173 81-156 (498)
127 KOG0121 Nuclear cap-binding pr 98.0 1E-05 2.2E-10 57.4 4.0 44 3-46 70-115 (153)
128 smart00362 RRM_2 RNA recogniti 97.9 1.9E-05 4.2E-10 50.2 4.6 35 8-42 36-72 (72)
129 KOG0415 Predicted peptidyl pro 97.9 8.3E-06 1.8E-10 67.3 2.9 47 1-47 271-319 (479)
130 KOG4454 RNA binding protein (R 97.9 4.4E-06 9.5E-11 64.6 0.7 99 3-160 42-142 (267)
131 PF08777 RRM_3: RNA binding mo 97.8 4.9E-05 1.1E-09 53.2 5.8 68 102-175 2-76 (105)
132 PF11608 Limkain-b1: Limkain b 97.8 8.3E-05 1.8E-09 48.9 6.1 66 102-177 3-75 (90)
133 KOG2193 IGF-II mRNA-binding pr 97.8 2.3E-06 5.1E-11 72.0 -2.1 115 11-179 37-157 (584)
134 PLN03213 repressor of silencin 97.7 3.7E-05 8.1E-10 66.2 4.0 41 5-47 44-88 (759)
135 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00016 3.5E-09 43.9 5.6 52 102-160 2-53 (53)
136 cd00590 RRM RRM (RNA recogniti 97.6 0.00012 2.5E-09 46.8 4.9 35 9-43 38-74 (74)
137 PLN03121 nucleic acid binding 97.6 8.3E-05 1.8E-09 59.0 4.8 43 1-46 37-80 (243)
138 KOG0112 Large RNA-binding prot 97.5 0.0001 2.3E-09 67.6 4.2 117 8-180 410-532 (975)
139 KOG0115 RNA-binding protein p5 97.5 0.00022 4.8E-09 56.6 5.2 75 102-177 32-112 (275)
140 KOG4209 Splicing factor RNPS1, 97.3 0.00028 6E-09 56.5 3.8 45 1-45 133-178 (231)
141 COG5175 MOT2 Transcriptional r 97.3 0.00085 1.8E-08 55.4 6.4 81 99-179 112-203 (480)
142 KOG4307 RNA binding protein RB 97.2 0.0014 3E-08 59.0 7.9 72 103-175 869-943 (944)
143 KOG0129 Predicted RNA-binding 97.1 0.0032 6.9E-08 54.8 8.7 65 97-162 255-325 (520)
144 KOG0128 RNA-binding protein SA 97.1 1.4E-05 3E-10 72.8 -5.8 111 13-161 616-727 (881)
145 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0039 8.6E-08 43.1 7.0 76 101-177 6-90 (100)
146 KOG1855 Predicted RNA-binding 97.0 0.0012 2.5E-08 56.2 5.1 66 98-163 228-306 (484)
147 KOG0114 Predicted RNA-binding 97.0 0.0014 3E-08 45.0 4.4 43 6-48 52-96 (124)
148 PF04059 RRM_2: RNA recognitio 96.9 0.0017 3.6E-08 44.6 4.4 45 1-45 35-85 (97)
149 KOG2314 Translation initiation 96.7 0.005 1.1E-07 54.3 6.7 76 99-175 56-140 (698)
150 KOG4676 Splicing factor, argin 96.5 0.0036 7.8E-08 52.7 4.4 75 102-176 8-86 (479)
151 PF08675 RNA_bind: RNA binding 96.4 0.02 4.4E-07 37.8 6.4 54 99-161 7-60 (87)
152 KOG0153 Predicted RNA-binding 96.3 0.0039 8.5E-08 51.7 3.6 38 9-46 262-302 (377)
153 KOG3152 TBP-binding protein, a 96.3 0.0026 5.6E-08 50.7 2.2 70 100-169 73-156 (278)
154 PF10309 DUF2414: Protein of u 96.1 0.055 1.2E-06 33.8 6.9 54 101-162 5-61 (62)
155 PF07292 NID: Nmi/IFP 35 domai 96.0 0.013 2.7E-07 39.5 4.2 69 14-123 1-74 (88)
156 PF08952 DUF1866: Domain of un 95.9 0.059 1.3E-06 39.7 7.6 73 98-178 24-106 (146)
157 PF11608 Limkain-b1: Limkain b 95.8 0.018 3.8E-07 38.2 4.0 37 9-45 37-75 (90)
158 PF15023 DUF4523: Protein of u 95.7 0.073 1.6E-06 38.9 7.1 73 98-177 83-160 (166)
159 KOG1996 mRNA splicing factor [ 95.5 0.047 1E-06 44.5 6.4 61 115-175 300-363 (378)
160 KOG2202 U2 snRNP splicing fact 95.4 0.007 1.5E-07 48.3 1.3 61 116-177 83-146 (260)
161 KOG4661 Hsp27-ERE-TATA-binding 95.4 0.033 7.2E-07 49.4 5.4 47 2-48 438-486 (940)
162 KOG2193 IGF-II mRNA-binding pr 95.0 0.022 4.8E-07 48.6 3.1 73 102-182 2-79 (584)
163 KOG2591 c-Mpl binding protein, 94.9 0.058 1.3E-06 47.7 5.3 75 94-175 168-248 (684)
164 KOG2416 Acinus (induces apopto 94.8 0.039 8.5E-07 49.1 4.1 76 97-178 440-521 (718)
165 KOG0132 RNA polymerase II C-te 94.7 0.04 8.7E-07 50.5 4.1 40 9-48 455-496 (894)
166 PRK11634 ATP-dependent RNA hel 94.5 0.98 2.1E-05 41.9 12.8 68 102-178 487-562 (629)
167 KOG1995 Conserved Zn-finger pr 93.9 0.04 8.7E-07 46.1 2.3 48 1-48 106-155 (351)
168 KOG4676 Splicing factor, argin 93.8 0.033 7.2E-07 47.1 1.6 57 102-162 152-208 (479)
169 KOG2135 Proteins containing th 93.0 0.068 1.5E-06 46.4 2.4 71 102-178 373-445 (526)
170 KOG0116 RasGAP SH3 binding pro 92.3 0.16 3.4E-06 44.3 3.6 40 8-47 327-367 (419)
171 KOG2314 Translation initiation 92.1 0.17 3.7E-06 45.0 3.6 40 2-42 97-139 (698)
172 KOG2068 MOT2 transcription fac 91.7 0.085 1.8E-06 43.9 1.3 80 100-179 76-163 (327)
173 KOG0533 RRM motif-containing p 91.6 0.3 6.5E-06 39.4 4.3 43 7-49 120-164 (243)
174 PF03467 Smg4_UPF3: Smg-4/UPF3 90.7 0.33 7.2E-06 37.3 3.7 63 100-162 6-74 (176)
175 smart00596 PRE_C2HC PRE_C2HC d 90.4 0.68 1.5E-05 29.5 4.2 61 116-177 2-63 (69)
176 PF07530 PRE_C2HC: Associated 90.1 0.93 2E-05 28.9 4.7 63 116-179 2-65 (68)
177 KOG0921 Dosage compensation co 89.7 0.73 1.6E-05 43.7 5.5 17 7-23 898-914 (1282)
178 KOG0112 Large RNA-binding prot 89.7 0.085 1.8E-06 49.3 -0.5 63 98-161 369-431 (975)
179 PF08952 DUF1866: Domain of un 89.5 0.58 1.3E-05 34.5 3.9 35 13-47 72-107 (146)
180 PF04847 Calcipressin: Calcipr 89.0 1.6 3.5E-05 33.7 6.2 61 114-180 8-72 (184)
181 KOG2253 U1 snRNP complex, subu 88.3 0.41 9E-06 43.4 2.9 69 98-175 37-107 (668)
182 KOG4285 Mitotic phosphoprotein 88.2 2.1 4.5E-05 35.4 6.5 62 101-169 197-259 (350)
183 KOG2202 U2 snRNP splicing fact 88.2 0.31 6.6E-06 39.2 1.8 43 3-45 102-146 (260)
184 KOG4660 Protein Mei2, essentia 87.7 0.78 1.7E-05 40.8 4.1 37 4-40 105-143 (549)
185 KOG3973 Uncharacterized conser 86.5 1.6 3.4E-05 36.8 5.0 7 220-226 451-457 (465)
186 PF14111 DUF4283: Domain of un 85.2 0.68 1.5E-05 34.3 2.2 84 9-136 53-140 (153)
187 PF03880 DbpA: DbpA RNA bindin 85.2 5.3 0.00012 25.7 6.2 65 103-176 2-74 (74)
188 KOG4210 Nuclear localization s 83.7 0.58 1.3E-05 38.9 1.4 62 100-161 87-148 (285)
189 PF05172 Nup35_RRM: Nup53/35/4 77.7 3.4 7.4E-05 28.5 3.4 35 10-44 53-89 (100)
190 PF03880 DbpA: DbpA RNA bindin 77.0 3.1 6.7E-05 26.9 2.9 32 12-44 41-74 (74)
191 KOG0151 Predicted splicing reg 75.4 6.9 0.00015 36.3 5.4 39 7-45 215-255 (877)
192 KOG4849 mRNA cleavage factor I 74.8 4.1 8.9E-05 34.4 3.6 38 4-41 117-156 (498)
193 KOG4574 RNA-binding protein (c 74.3 2.2 4.7E-05 40.2 2.1 76 103-184 300-379 (1007)
194 PF11767 SET_assoc: Histone ly 71.3 6.4 0.00014 24.9 3.1 28 14-41 36-65 (66)
195 KOG4410 5-formyltetrahydrofola 68.4 28 0.00061 28.7 6.9 47 101-153 330-377 (396)
196 PF08777 RRM_3: RNA binding mo 67.1 8 0.00017 26.9 3.3 32 13-44 39-77 (105)
197 COG5175 MOT2 Transcriptional r 66.0 7.5 0.00016 32.8 3.3 32 15-46 169-202 (480)
198 PF07576 BRAP2: BRCA1-associat 65.7 44 0.00096 23.5 10.1 59 101-161 13-72 (110)
199 PF15513 DUF4651: Domain of un 64.9 19 0.00042 22.4 4.2 19 116-134 9-27 (62)
200 KOG0804 Cytoplasmic Zn-finger 64.8 42 0.0009 29.7 7.6 60 101-162 74-134 (493)
201 PF02714 DUF221: Domain of unk 63.3 8.3 0.00018 32.4 3.3 32 14-45 1-32 (325)
202 PF10567 Nab6_mRNP_bdg: RNA-re 61.5 22 0.00047 29.5 5.1 79 99-177 13-106 (309)
203 COG4371 Predicted membrane pro 60.0 15 0.00033 29.7 3.9 8 108-115 9-16 (334)
204 PF02714 DUF221: Domain of unk 58.9 11 0.00024 31.7 3.3 35 146-180 1-35 (325)
205 KOG4483 Uncharacterized conser 58.7 34 0.00074 29.7 6.0 60 98-164 388-448 (528)
206 KOG2891 Surface glycoprotein [ 57.3 23 0.00049 29.2 4.6 36 100-135 148-195 (445)
207 PF11767 SET_assoc: Histone ly 54.7 52 0.0011 20.8 6.0 52 112-172 11-64 (66)
208 PRK14548 50S ribosomal protein 53.0 57 0.0012 21.7 5.2 56 103-161 22-79 (84)
209 TIGR03636 L23_arch archaeal ri 52.9 61 0.0013 21.1 5.3 55 103-160 15-71 (77)
210 PF03468 XS: XS domain; Inter 50.0 18 0.0004 25.6 2.7 47 103-152 10-65 (116)
211 KOG3973 Uncharacterized conser 49.0 39 0.00084 28.8 4.8 8 114-121 199-206 (465)
212 KOG2318 Uncharacterized conser 47.2 97 0.0021 28.4 7.2 78 98-175 171-304 (650)
213 PF07292 NID: Nmi/IFP 35 domai 45.2 39 0.00085 22.7 3.6 29 146-174 1-32 (88)
214 KOG4285 Mitotic phosphoprotein 42.7 32 0.00069 28.7 3.4 47 2-48 223-271 (350)
215 KOG4019 Calcineurin-mediated s 41.5 28 0.00061 26.8 2.7 74 102-181 11-92 (193)
216 COG3254 Uncharacterized conser 40.9 91 0.002 21.7 4.8 43 115-160 26-68 (105)
217 PRK10590 ATP-dependent RNA hel 36.4 2.1E+02 0.0045 25.4 7.9 9 143-151 342-350 (456)
218 KOG4008 rRNA processing protei 35.8 34 0.00074 27.5 2.4 32 98-129 37-68 (261)
219 PF08206 OB_RNB: Ribonuclease 35.5 27 0.00059 21.2 1.6 36 9-45 6-44 (58)
220 KOG2135 Proteins containing th 34.8 22 0.00048 31.4 1.4 36 12-47 410-446 (526)
221 PF04847 Calcipressin: Calcipr 33.4 53 0.0012 25.4 3.2 35 13-47 33-71 (184)
222 COG4907 Predicted membrane pro 33.0 42 0.0009 29.8 2.7 6 147-152 515-520 (595)
223 PF11411 DNA_ligase_IV: DNA li 31.8 40 0.00086 18.5 1.6 16 111-126 19-34 (36)
224 KOG2591 c-Mpl binding protein, 30.2 28 0.0006 31.6 1.3 27 15-41 216-246 (684)
225 PRK09937 stationary phase/star 30.2 30 0.00066 22.3 1.2 11 9-19 11-21 (74)
226 KOG1996 mRNA splicing factor [ 29.7 48 0.001 27.6 2.4 15 14-28 332-346 (378)
227 PRK11901 hypothetical protein; 28.8 1.1E+02 0.0024 25.9 4.4 59 101-164 245-305 (327)
228 PRK14998 cold shock-like prote 28.3 33 0.00071 22.1 1.1 12 9-20 11-22 (73)
229 PF03439 Spt5-NGN: Early trans 27.5 1.4E+02 0.003 19.6 4.1 36 127-167 33-68 (84)
230 PRK15464 cold shock-like prote 27.0 33 0.00071 21.9 0.9 12 9-20 14-25 (70)
231 TIGR02381 cspD cold shock doma 26.3 39 0.00085 21.3 1.2 12 9-20 11-22 (68)
232 PRK09507 cspE cold shock prote 25.9 37 0.0008 21.5 1.0 12 9-20 13-24 (69)
233 PRK15463 cold shock-like prote 24.8 40 0.00086 21.5 1.0 12 9-20 14-25 (70)
234 PRK10943 cold shock-like prote 24.6 39 0.00085 21.4 0.9 12 9-20 13-24 (69)
235 PF09707 Cas_Cas2CT1978: CRISP 23.8 1.8E+02 0.0039 19.4 4.0 48 101-151 25-72 (86)
236 COG5193 LHP1 La protein, small 23.3 39 0.00084 29.4 0.9 60 102-161 175-244 (438)
237 KOG3262 H/ACA small nucleolar 23.1 1.7E+02 0.0037 22.7 4.2 9 123-131 96-104 (215)
238 PF03108 DBD_Tnp_Mut: MuDR fam 22.3 1E+02 0.0023 19.0 2.6 30 17-46 9-38 (67)
239 PRK09890 cold shock protein Cs 21.4 49 0.0011 21.0 0.9 11 9-19 14-24 (70)
240 PRK10354 RNA chaperone/anti-te 21.0 51 0.0011 20.9 0.9 11 9-19 14-24 (70)
241 PHA01632 hypothetical protein 21.0 1.1E+02 0.0023 18.6 2.2 20 105-124 20-39 (64)
242 KOG0862 Synaptobrevin/VAMP-lik 20.7 67 0.0014 25.5 1.7 12 142-153 108-119 (216)
243 PRK10590 ATP-dependent RNA hel 20.4 1.9E+02 0.004 25.7 4.7 12 14-25 78-89 (456)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=5.6e-30 Score=215.33 Aligned_cols=135 Identities=20% Similarity=0.328 Sum_probs=117.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+.|+++||||||+|.+.++|++|| +++.+|.+++|+|.++.+...
T Consensus 139 i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~----------------------------- 189 (346)
T TIGR01659 139 IMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGE----------------------------- 189 (346)
T ss_pred EEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccccc-----------------------------
Confidence 5689999999999999999999999999 789999999999998764321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
.....+|||+|||+++++++|+++|++||.|+.|.|+.+..++++++||||+|.++++|++
T Consensus 190 -------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~ 250 (346)
T TIGR01659 190 -------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQE 250 (346)
T ss_pred -------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHH
Confidence 1224689999999999999999999999999999999998899999999999999999999
Q ss_pred HHhcCC--ccCC--eEEEEEeccCCCCCC
Q 026534 159 VSRRSH--EICG--QQVAIDSATPLDDAG 183 (237)
Q Consensus 159 a~~~~~--~~~g--~~l~v~~a~~~~~~~ 183 (237)
||+.++ .|.+ ++|+|.++.......
T Consensus 251 Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 251 AISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHHHhCCCccCCCceeEEEEECCcccccc
Confidence 998665 4444 789999988664443
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.7e-28 Score=191.38 Aligned_cols=145 Identities=28% Similarity=0.400 Sum_probs=120.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
||||..|++|||||||.|.+.++|++|| |++.+|++|.|+-.||..+........ .
T Consensus 94 virD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~-------l--------------- 151 (321)
T KOG0148|consen 94 VIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKP-------L--------------- 151 (321)
T ss_pred EeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCC-------c---------------
Confidence 6899999999999999999999999999 899999999999999987752111000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
.-...-+......++|||+|++..++|++|++.|+.||.|.+|+|.++ +||+||.|+++|.|..
T Consensus 152 ----------tfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 152 ----------TFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred ----------cHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 000112223566789999999999999999999999999999999997 6899999999999999
Q ss_pred HHhcCC--ccCCeEEEEEeccCCCCCC
Q 026534 159 VSRRSH--EICGQQVAIDSATPLDDAG 183 (237)
Q Consensus 159 a~~~~~--~~~g~~l~v~~a~~~~~~~ 183 (237)
||..++ +|.|+.|+|.|.+......
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCCCCC
Confidence 997655 9999999999987655443
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=1.5e-25 Score=198.18 Aligned_cols=145 Identities=19% Similarity=0.430 Sum_probs=119.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+.|+++||||||+|.+.++|++|| +++..|+|+.|+|.++...........
T Consensus 139 I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~----------------------- 195 (612)
T TIGR01645 139 MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIID----------------------- 195 (612)
T ss_pred EeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccc-----------------------
Confidence 4689999999999999999999999999 789999999999985432211000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
..........+|||+|||+++++++|+++|+.||.|++|+|.++..+++++|||||+|.+.++|..
T Consensus 196 --------------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 196 --------------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred --------------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 000012235799999999999999999999999999999999998899999999999999999999
Q ss_pred HHhcCC--ccCCeEEEEEeccCCCCC
Q 026534 159 VSRRSH--EICGQQVAIDSATPLDDA 182 (237)
Q Consensus 159 a~~~~~--~~~g~~l~v~~a~~~~~~ 182 (237)
||..++ +|.|+.|+|.++.++...
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCccc
Confidence 997655 899999999998865433
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=8.4e-25 Score=186.43 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=119.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCC--cEEEEeecCCCCCCCCccccC-----CCCCCCC-------
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGG--STVVVDRATPKEDDFRPVGRM-----SHGGYGA------- 64 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~g--r~i~v~~a~~~~~~~~~~~~~-----~~~~~~~------- 64 (237)
|++|..++.++|||||+|.+.++|++|| +++..+.| .+|.|.++............. .......
T Consensus 121 ~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (352)
T TIGR01661 121 ILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTIL 200 (352)
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccc
Confidence 3567788999999999999999999999 78888876 678888876543211100000 0000000
Q ss_pred --------cc----------chhhHH-hhhhcc--------CCCCC--CCCC--CCCCCC-CCCCCCCCCeEEEcCCCCC
Q 026534 65 --------YN----------AYISAA-TRYAAL--------GAPTL--YDHP--GSFYGR-GESSQRIGKKIFVGRLPQE 112 (237)
Q Consensus 65 --------~~----------~~~~~~-~r~~~~--------~~~~~--~~~~--~~~~~~-~~~~~~~~~~l~v~~lp~~ 112 (237)
.. ...... ...... ..... .... ...... .......+.+|||+|||++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~ 280 (352)
T TIGR01661 201 TAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPD 280 (352)
T ss_pred cccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCC
Confidence 00 000000 000000 00000 0000 000000 1111233457999999999
Q ss_pred CCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEeccCCCC
Q 026534 113 ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDD 181 (237)
Q Consensus 113 ~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~~~~~ 181 (237)
+++++|+++|++||.|..|+|+.|..|+.++|||||+|.+.++|.+||..++ .|.|+.|+|.++.+++.
T Consensus 281 ~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 281 TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999998899999999999999999999997655 99999999999988764
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=1.9e-23 Score=184.65 Aligned_cols=127 Identities=24% Similarity=0.387 Sum_probs=105.3
Q ss_pred CCCCCcccEEEEEecCHHHHHHHH--h-c-cceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCC
Q 026534 5 QGSKAHRGIGFITFASADSVENLM--V-D-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (237)
Q Consensus 5 ~~tg~skG~aFV~F~~~~~A~~Ai--~-~-~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (237)
..+++++|||||+|.+.++|..|+ + + .+.+.|+.|.|.|+.++......
T Consensus 176 ~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~--------------------------- 228 (578)
T TIGR01648 176 ADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED--------------------------- 228 (578)
T ss_pred cccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc---------------------------
Confidence 345789999999999999999998 2 2 35789999999999875421100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcC--CcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~--G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
.....++|||+||++++++++|+++|++| |.|+.|.+++ +||||+|.+.++|++
T Consensus 229 ----------------~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~k 284 (578)
T TIGR01648 229 ----------------VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVK 284 (578)
T ss_pred ----------------ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHH
Confidence 12345789999999999999999999999 9999998754 599999999999999
Q ss_pred HHhcCC--ccCCeEEEEEeccCCCCC
Q 026534 159 VSRRSH--EICGQQVAIDSATPLDDA 182 (237)
Q Consensus 159 a~~~~~--~~~g~~l~v~~a~~~~~~ 182 (237)
||+.++ +|.|+.|+|.+++|+...
T Consensus 285 Ai~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 285 AMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHHhCCCEECCEEEEEEEccCCCcc
Confidence 997554 999999999999887544
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.4e-23 Score=174.08 Aligned_cols=175 Identities=22% Similarity=0.312 Sum_probs=122.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hcccee-CCcEEEEeecCCCCCC----------CC----------cccc-
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHEL-GGSTVVVDRATPKEDD----------FR----------PVGR- 56 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~-~gr~i~v~~a~~~~~~----------~~----------~~~~- 56 (237)
|++|+.||.+||||||.|.++++|++|| +|+++| .|+.|.|+.+...... .. +...
T Consensus 115 LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvd 194 (506)
T KOG0117|consen 115 LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVD 194 (506)
T ss_pred EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeE
Confidence 6899999999999999999999999999 788888 7899999877544321 10 0000
Q ss_pred ---CCCC---------CCCCccchhhHHhhhhccCCCCC--CC-----CC-CCCCCCCCCCCCCCCeEEEcCCCCCCCHH
Q 026534 57 ---MSHG---------GYGAYNAYISAATRYAALGAPTL--YD-----HP-GSFYGRGESSQRIGKKIFVGRLPQEATAE 116 (237)
Q Consensus 57 ---~~~~---------~~~~~~~~~~~~~r~~~~~~~~~--~~-----~~-~~~~~~~~~~~~~~~~l~v~~lp~~~~~~ 116 (237)
-.++ +...+..+..++.....+-.... .. .+ ..............+.|||.||+.++|++
T Consensus 195 Vivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE 274 (506)
T KOG0117|consen 195 VIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEE 274 (506)
T ss_pred EEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHH
Confidence 0011 11111122222222222221111 11 11 12222333356667899999999999999
Q ss_pred HHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEeccCCCCCC
Q 026534 117 DLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDDAG 183 (237)
Q Consensus 117 ~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~~~~~~~ 183 (237)
.|+.+|.+||.|+.|+.++| ||||+|.++++|.+|+++++ +|.|..|.|.+|+|..+..
T Consensus 275 ~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 275 TLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 99999999999999988765 99999999999999998655 9999999999999976554
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=1.6e-23 Score=184.49 Aligned_cols=142 Identities=24% Similarity=0.448 Sum_probs=117.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (237)
|++|+.|+++||||||+|.+.++|++|| +++..|.|++|.|+.+...........
T Consensus 121 i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~------------------------ 176 (457)
T TIGR01622 121 CIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAA------------------------ 176 (457)
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcc------------------------
Confidence 5789999999999999999999999999 899999999999987654322110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHH
Q 026534 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a 159 (237)
.. . ........+|||+|||..+++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|..|
T Consensus 177 -~~---~--------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 177 -TH---Q--------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred -cc---c--------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 00 0 00012268999999999999999999999999999999999988889999999999999999999
Q ss_pred HhcCC--ccCCeEEEEEeccC
Q 026534 160 SRRSH--EICGQQVAIDSATP 178 (237)
Q Consensus 160 ~~~~~--~~~g~~l~v~~a~~ 178 (237)
+..++ .|.|+.|.|.++..
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHhcCCcEECCEEEEEEEccC
Confidence 97554 89999999999763
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.91 E-value=1.9e-23 Score=178.16 Aligned_cols=132 Identities=24% Similarity=0.448 Sum_probs=115.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+.||+|||||||+|.+.++|++|| +++..|.|+.|.|.++.+...
T Consensus 35 i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~----------------------------- 85 (352)
T TIGR01661 35 LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD----------------------------- 85 (352)
T ss_pred EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc-----------------------------
Confidence 5789999999999999999999999999 789999999999999865422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
.....+|||+|||..+++++|+++|++||.|..+.++.+..++.+++||||+|.+.++|+.
T Consensus 86 -------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 86 -------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred -------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 1234689999999999999999999999999999999988888899999999999999999
Q ss_pred HHhcCC--ccCC--eEEEEEeccCCC
Q 026534 159 VSRRSH--EICG--QQVAIDSATPLD 180 (237)
Q Consensus 159 a~~~~~--~~~g--~~l~v~~a~~~~ 180 (237)
||..++ .+.+ .+|.|.++..+.
T Consensus 147 ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 147 AIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHhCCCccCCCceeEEEEECCCCC
Confidence 997554 4444 678888886554
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.5e-24 Score=176.21 Aligned_cols=136 Identities=26% Similarity=0.452 Sum_probs=117.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH---hccceeCC--cEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhh
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM---VDTHELGG--STVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRY 75 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai---~~~~~~~g--r~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 75 (237)
|+||+.|+.|||||||.|.+.++|.+|+ .|...|-| .+|.|+++..+...
T Consensus 66 l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er------------------------- 120 (510)
T KOG0144|consen 66 LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERER------------------------- 120 (510)
T ss_pred eecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhc-------------------------
Confidence 6899999999999999999999999999 35667766 56888888765432
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHH
Q 026534 76 AALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 155 (237)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~ 155 (237)
-....+|||+.|+..+||.+|+++|.+||.|++|.|.+| ..+.+||||||.|.+.+.
T Consensus 121 ----------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~ 177 (510)
T KOG0144|consen 121 ----------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEM 177 (510)
T ss_pred ----------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHH
Confidence 123578999999999999999999999999999999999 668899999999999999
Q ss_pred HHHHHhcCC-----ccCCeEEEEEeccCCCCCCC
Q 026534 156 ADRVSRRSH-----EICGQQVAIDSATPLDDAGP 184 (237)
Q Consensus 156 a~~a~~~~~-----~~~g~~l~v~~a~~~~~~~~ 184 (237)
|.+||+.++ +=+..+|.|++|.++.++..
T Consensus 178 A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 178 AVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred HHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 999998766 44567999999999877654
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.1e-23 Score=162.32 Aligned_cols=132 Identities=23% Similarity=0.444 Sum_probs=118.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
||||+.||.|.||+||.|.++.||++|| +|+..|..+.|+|.++.|...
T Consensus 73 LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~----------------------------- 123 (360)
T KOG0145|consen 73 LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD----------------------------- 123 (360)
T ss_pred eeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChh-----------------------------
Confidence 6899999999999999999999999999 789999999999999987643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
...+..|||++||..+|..+|+.+|++||.|..-+|..|..|+.++|.+||.|...++|+.
T Consensus 124 -------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~ 184 (360)
T KOG0145|consen 124 -------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEE 184 (360)
T ss_pred -------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHH
Confidence 3345789999999999999999999999999988999999999999999999999999999
Q ss_pred HHhcCC----ccCCeEEEEEeccCCC
Q 026534 159 VSRRSH----EICGQQVAIDSATPLD 180 (237)
Q Consensus 159 a~~~~~----~~~g~~l~v~~a~~~~ 180 (237)
||..++ .-+-.+|.|+++....
T Consensus 185 AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 185 AIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred HHHhccCCCCCCCCCCeEEEecCCcc
Confidence 997544 3456789999986553
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=1.1e-21 Score=175.08 Aligned_cols=157 Identities=13% Similarity=0.199 Sum_probs=114.7
Q ss_pred CCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCC
Q 026534 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT 82 (237)
Q Consensus 4 d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (237)
+..+++++|||||+|.+.++|..|| +++..|.|+.|.|..+................ ... ...
T Consensus 216 ~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~-----~~~---------~~~-- 279 (509)
T TIGR01642 216 SVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQK-----NPD---------DNA-- 279 (509)
T ss_pred EEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCC-----CCc---------ccc--
Confidence 3445688999999999999999999 89999999999997654332111000000000 000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc
Q 026534 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (237)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 162 (237)
... ..............+|||+|||+.+++++|+++|+.||.|..+.|+.+..++.++|||||+|.+.++|..||..
T Consensus 280 --~~~-~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~ 356 (509)
T TIGR01642 280 --KNV-EKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAA 356 (509)
T ss_pred --ccc-ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 000 00001111234568999999999999999999999999999999999988999999999999999999999975
Q ss_pred C--CccCCeEEEEEeccCC
Q 026534 163 S--HEICGQQVAIDSATPL 179 (237)
Q Consensus 163 ~--~~~~g~~l~v~~a~~~ 179 (237)
+ ..|.++.|.|.++...
T Consensus 357 l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 357 LNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred cCCCEECCeEEEEEECccC
Confidence 4 4899999999998643
No 12
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.88 E-value=1.5e-22 Score=149.77 Aligned_cols=136 Identities=26% Similarity=0.544 Sum_probs=118.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+.|...+|||||+|.+.++|+-|| +++..|.|++|+|..+......
T Consensus 41 iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~n---------------------------- 92 (203)
T KOG0131|consen 41 IPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKN---------------------------- 92 (203)
T ss_pred cchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccccccc----------------------------
Confidence 6899999999999999999999999999 8899999999999888722111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEE-EEeecCCCCCCCcceEEEEEcCHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVAD 157 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~-~~v~~~~~~~~~~g~afv~f~~~~~a~ 157 (237)
...+.+|||+||.+++++..|.+.|+.||.|.. ..|+++..|+.+++|+||.|.+.+.+.
T Consensus 93 -------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 93 -------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred -------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 234579999999999999999999999998864 588999899999999999999999999
Q ss_pred HHHhc--CCccCCeEEEEEeccCCCCCC
Q 026534 158 RVSRR--SHEICGQQVAIDSATPLDDAG 183 (237)
Q Consensus 158 ~a~~~--~~~~~g~~l~v~~a~~~~~~~ 183 (237)
+|+.. .+.++++++.|.++..+....
T Consensus 154 ~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHhccchhcCCceEEEEEEecCCCc
Confidence 99964 448899999999998665443
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.88 E-value=3.6e-22 Score=179.98 Aligned_cols=135 Identities=22% Similarity=0.378 Sum_probs=115.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+.|++|+|||||+|.+.++|++|| ++...|.|++|+|.|+.......
T Consensus 32 v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~--------------------------- 84 (562)
T TIGR01628 32 VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLR--------------------------- 84 (562)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccccc---------------------------
Confidence 4689999999999999999999999999 67888999999999875332110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
.....+|||+|||.++++++|+++|+.||.|..|.|+.+ .++++++||||+|.+.++|..
T Consensus 85 -------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 85 -------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred -------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHH
Confidence 112357999999999999999999999999999999988 578899999999999999999
Q ss_pred HHhcCC--ccCCeEEEEEeccCCCCC
Q 026534 159 VSRRSH--EICGQQVAIDSATPLDDA 182 (237)
Q Consensus 159 a~~~~~--~~~g~~l~v~~a~~~~~~ 182 (237)
|+..++ .+.++.|.|....++..+
T Consensus 145 Ai~~lng~~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 145 AIQKVNGMLLNDKEVYVGRFIKKHER 170 (562)
T ss_pred HHHHhcccEecCceEEEecccccccc
Confidence 997654 888999999877665444
No 14
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=8.1e-21 Score=141.06 Aligned_cols=85 Identities=29% Similarity=0.520 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~ 175 (237)
...+++|||+|||+++++++|+++|++||.|+.|.|+.+..++++++||||+|.+.++|+.||..+ ..|.++.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 455779999999999999999999999999999999999999999999999999999999999754 489999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
+.++...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9876554
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.86 E-value=2e-21 Score=175.18 Aligned_cols=145 Identities=26% Similarity=0.465 Sum_probs=115.8
Q ss_pred CCCCcccEEEEEecCHHHHHHHH--hccceeC----CcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccC
Q 026534 6 GSKAHRGIGFITFASADSVENLM--VDTHELG----GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (237)
Q Consensus 6 ~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~----gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (237)
.+++++|||||+|.+.++|.+|+ +++..|. |+.|.|.++.++.......... .....
T Consensus 214 ~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~-----------------~~~~~ 276 (562)
T TIGR01628 214 GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRK-----------------FEELQ 276 (562)
T ss_pred CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhh-----------------HHhhh
Confidence 46899999999999999999999 7889999 9999998887654321110000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHH
Q 026534 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a 159 (237)
..........+|||+||++.+++++|+++|++||.|++|+|+.+ .++.+++||||+|.+.++|.+|
T Consensus 277 -------------~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A 342 (562)
T TIGR01628 277 -------------QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRA 342 (562)
T ss_pred -------------hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHH
Confidence 00011334678999999999999999999999999999999999 7889999999999999999999
Q ss_pred HhcCC--ccCCeEEEEEeccCCCC
Q 026534 160 SRRSH--EICGQQVAIDSATPLDD 181 (237)
Q Consensus 160 ~~~~~--~~~g~~l~v~~a~~~~~ 181 (237)
+..++ .|.|++|.|.++..++.
T Consensus 343 ~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 343 VTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred HHHhcCCeeCCceeEEEeccCcHH
Confidence 97655 89999999999987653
No 16
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.86 E-value=4.4e-21 Score=157.42 Aligned_cols=143 Identities=36% Similarity=0.652 Sum_probs=128.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (237)
|++|+.|++++||+||+|++++...++| ...|.|+|+.|.++.+.++........
T Consensus 38 vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~------------------------ 93 (311)
T KOG4205|consen 38 VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGR------------------------ 93 (311)
T ss_pred EeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCccccccccc------------------------
Confidence 5789999999999999999999999999 558899999999999999876544322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHH
Q 026534 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a 159 (237)
...+.+|||++||.++++++|++.|++||.|..+.++.|..+.++++|+||.|.+++++.++
T Consensus 94 ------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 94 ------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred ------------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 22578999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-cCCccCCeEEEEEeccCCCCCCCC
Q 026534 160 SR-RSHEICGQQVAIDSATPLDDAGPS 185 (237)
Q Consensus 160 ~~-~~~~~~g~~l~v~~a~~~~~~~~~ 185 (237)
+. ..|.|+++.+.|..|.|++...+.
T Consensus 156 ~~~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 156 TLQKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred cccceeeecCceeeEeeccchhhcccc
Confidence 75 577999999999999999887654
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=2.6e-20 Score=158.17 Aligned_cols=181 Identities=22% Similarity=0.340 Sum_probs=121.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCcccc-----------------CCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGR-----------------MSHGG 61 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~-----------------~~~~~ 61 (237)
|++.+.++.+ |||||.|.+..+|..|| +|+++|+||+|.|.||.++......... .....
T Consensus 149 IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~ 227 (678)
T KOG0127|consen 149 IPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDG 227 (678)
T ss_pred cccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccc
Confidence 5666665444 99999999999999999 7899999999999999887543321100 00000
Q ss_pred C--CCcc-chhhHH----h--hhhcc--CC-----CCCCCCC--C----CCCCC---CCCCCCCCCeEEEcCCCCCCCHH
Q 026534 62 Y--GAYN-AYISAA----T--RYAAL--GA-----PTLYDHP--G----SFYGR---GESSQRIGKKIFVGRLPQEATAE 116 (237)
Q Consensus 62 ~--~~~~-~~~~~~----~--r~~~~--~~-----~~~~~~~--~----~~~~~---~~~~~~~~~~l~v~~lp~~~~~~ 116 (237)
. .... ...... . ..... .. ....+.. . ..... .........+|||+|||+++|++
T Consensus 228 ~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEE 307 (678)
T KOG0127|consen 228 KDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEE 307 (678)
T ss_pred cccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHH
Confidence 0 0000 000000 0 00000 00 0000000 0 00000 01112335899999999999999
Q ss_pred HHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--------CccCCeEEEEEeccCCCCC
Q 026534 117 DLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--------HEICGQQVAIDSATPLDDA 182 (237)
Q Consensus 117 ~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--------~~~~g~~l~v~~a~~~~~~ 182 (237)
+|.+.|++||.|.++.|+.++.|++++|.|||.|.+..+|.+||+.- ..|.|+.|.|..|.++.+.
T Consensus 308 el~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 308 ELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred HHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHH
Confidence 99999999999999999999999999999999999999999999643 2688999999999876543
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=3e-20 Score=157.76 Aligned_cols=156 Identities=24% Similarity=0.436 Sum_probs=120.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCc--cccCCCCCCCCccchhhHHhhhh
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRP--VGRMSHGGYGAYNAYISAATRYA 76 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~ 76 (237)
||.++.++.+||||||+|+-.+|++.|+ .....|+|+.|.|..+.++...... .....
T Consensus 37 vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~------------------ 98 (678)
T KOG0127|consen 37 VVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKA------------------ 98 (678)
T ss_pred EecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchh------------------
Confidence 5788999999999999999999999999 4677899999999999877654321 10000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHH
Q 026534 77 ALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVA 156 (237)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a 156 (237)
...+..+.. ........+..+|.|+|||+.+...+|+.+|+.||.|..|.|++...+..+ |||||.|....+|
T Consensus 99 -veK~~~q~~-----~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA 171 (678)
T KOG0127|consen 99 -VEKPIEQKR-----PTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDA 171 (678)
T ss_pred -hhcccccCC-----cchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHH
Confidence 000000000 000011334679999999999999999999999999999999987665555 9999999999999
Q ss_pred HHHHh--cCCccCCeEEEEEeccCCCC
Q 026534 157 DRVSR--RSHEICGQQVAIDSATPLDD 181 (237)
Q Consensus 157 ~~a~~--~~~~~~g~~l~v~~a~~~~~ 181 (237)
..||+ +++.|.|++|.|.||.++..
T Consensus 172 ~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 172 EKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred HHHHHhccCceecCceeEEeeeccccc
Confidence 99997 45699999999999988754
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.84 E-value=2.8e-20 Score=164.62 Aligned_cols=125 Identities=26% Similarity=0.464 Sum_probs=101.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeC-CcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELG-GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAA 77 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~-gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 77 (237)
|++| .||+|||||||+|.+.++|++|| +++.+|. |+.|.|..+.
T Consensus 90 l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~-------------------------------- 136 (578)
T TIGR01648 90 LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV-------------------------------- 136 (578)
T ss_pred EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc--------------------------------
Confidence 5678 88999999999999999999999 6777774 7777665432
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCc-EEEEEee-cCCCCCCCcceEEEEEcCHHH
Q 026534 78 LGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVP-KDPKRTGHRGFGFVTFAEEVV 155 (237)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~-i~~~~v~-~~~~~~~~~g~afv~f~~~~~ 155 (237)
..++|||+|||.++++++|.++|++++. ++.+.+. .....+++++||||+|.++++
T Consensus 137 ----------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~ed 194 (578)
T TIGR01648 137 ----------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRA 194 (578)
T ss_pred ----------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHH
Confidence 2368999999999999999999999863 4444333 333456789999999999999
Q ss_pred HHHHHhcCC----ccCCeEEEEEeccCCC
Q 026534 156 ADRVSRRSH----EICGQQVAIDSATPLD 180 (237)
Q Consensus 156 a~~a~~~~~----~~~g~~l~v~~a~~~~ 180 (237)
|+.|+.+++ .+.++.|.|+++.++.
T Consensus 195 Aa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 195 AAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred HHHHHHHhhccceEecCceEEEEeecccc
Confidence 999986543 6789999999998754
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=5.5e-20 Score=149.50 Aligned_cols=141 Identities=18% Similarity=0.424 Sum_probs=114.5
Q ss_pred CCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCC
Q 026534 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (237)
Q Consensus 3 ~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (237)
-|+.|+++||||||+|+-++.|+.|+ ||+.+++||.|+|.+..--...+.- ....+
T Consensus 147 WDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpi---------------ID~vq------- 204 (544)
T KOG0124|consen 147 WDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPI---------------IDMVQ------- 204 (544)
T ss_pred cccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchH---------------HHHHH-------
Confidence 48899999999999999999999999 8999999999999754322111000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHH
Q 026534 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~ 160 (237)
.+...-++|||..++++++++||+.+|+.||+|+.|.+.++..++..+||+|++|.+..+...||
T Consensus 205 ---------------eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 205 ---------------EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred ---------------HHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 01233579999999999999999999999999999999999888889999999999999988898
Q ss_pred hcCC--ccCCeEEEEEeccCCC
Q 026534 161 RRSH--EICGQQVAIDSATPLD 180 (237)
Q Consensus 161 ~~~~--~~~g~~l~v~~a~~~~ 180 (237)
..++ .|.|+.|+|-.+...+
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhcchhhcccceEecccccCCC
Confidence 6554 8999999999875443
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.82 E-value=4.9e-19 Score=156.52 Aligned_cols=156 Identities=14% Similarity=0.217 Sum_probs=105.8
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccch-hhHHhhhhccCCCCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAY-ISAATRYAALGAPTLYDH 86 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~ 86 (237)
.+|||||+|.+.++|+.|| ++++.|.|++|+|.++............... ....+..+ .....|.....
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~r~~~~~------- 383 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDD-GLTSYKDYSSSRNHRFKKPG------- 383 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcC-CCcccccccCCccccCCCcc-------
Confidence 4799999999999999999 7899999999999987554321111000000 00000000 00000000000
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCc--EEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC
Q 026534 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 164 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~--i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 164 (237)
.........++.+|||+|||.++++++|+++|+.||. |+.|++.... ++ .+++|||+|.+.++|..||..++
T Consensus 384 ----~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln 457 (481)
T TIGR01649 384 ----SANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALN 457 (481)
T ss_pred ----cccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhc
Confidence 0000111346789999999999999999999999997 7788886543 33 57899999999999999997655
Q ss_pred --ccCCeE------EEEEeccCC
Q 026534 165 --EICGQQ------VAIDSATPL 179 (237)
Q Consensus 165 --~~~g~~------l~v~~a~~~ 179 (237)
.|.++. |+|.+++++
T Consensus 458 ~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 458 HHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCccCCCCCCccceEEEEeccCC
Confidence 888874 999998865
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.80 E-value=1.5e-18 Score=154.85 Aligned_cols=157 Identities=15% Similarity=0.208 Sum_probs=111.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+.||.++|||||+|.+.++|..|| +++..|.|++|.|+++............... . .. . .
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~---~--~~--~-------~ 392 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGM---A--PV--T-------L 392 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccc---c--cc--c-------c
Confidence 4688899999999999999999999999 7899999999999998654332211100000 0 00 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCC----------CHHHHHHHHhcCCcEEEEEeecCC---CCCCCcce
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEA----------TAEDLRRYFSRFGRILDVYVPKDP---KRTGHRGF 145 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~----------~~~~l~~~F~~~G~i~~~~v~~~~---~~~~~~g~ 145 (237)
.... ...........++.+|+|.||.... ..++|+++|.+||.|+.|.|+++. .++...|+
T Consensus 393 ~~~~------~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~ 466 (509)
T TIGR01642 393 LAKA------LSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGK 466 (509)
T ss_pred cccc------chhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcce
Confidence 0000 0000000113356789999996421 236799999999999999998752 34456799
Q ss_pred EEEEEcCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 026534 146 GFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (237)
Q Consensus 146 afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~ 177 (237)
+||+|.+.++|++||..++ .|.|+.|.|.+..
T Consensus 467 ~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 467 VFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 9999999999999998766 9999999999864
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=6.7e-18 Score=131.74 Aligned_cols=179 Identities=21% Similarity=0.245 Sum_probs=121.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCC--cEEEEeecCCCCCCCCc--c-ccCCCCCCCCccchhhHHh
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGG--STVVVDRATPKEDDFRP--V-GRMSHGGYGAYNAYISAAT 73 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~g--r~i~v~~a~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 73 (237)
|..|..||.|||.|||.|...++|+.|| +|++.-.| .+|.|+++.-....... . .--..+.......-.....
T Consensus 159 iL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~ 238 (360)
T KOG0145|consen 159 ILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQ 238 (360)
T ss_pred hhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhh
Confidence 5679999999999999999999999999 78886665 66999988543221110 0 0000000111111111112
Q ss_pred hhhccC-----------CCCCCCCCCCCCCCCC-CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCC
Q 026534 74 RYAALG-----------APTLYDHPGSFYGRGE-SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG 141 (237)
Q Consensus 74 r~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~ 141 (237)
|+.--. +|...+.-....+... .......+|||=||.++++|.-|+.+|.+||.|..|+|++|..|.+
T Consensus 239 r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnk 318 (360)
T KOG0145|consen 239 RFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNK 318 (360)
T ss_pred hhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCccc
Confidence 221100 0100111111111111 1234478999999999999999999999999999999999999999
Q ss_pred CcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEeccCC
Q 026534 142 HRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATPL 179 (237)
Q Consensus 142 ~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~a~~~ 179 (237)
.+||+||.+.+-++|..||..+ ..+.++.|.|.+...+
T Consensus 319 CKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 319 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999998654 4899999999986644
No 24
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.79 E-value=3.9e-18 Score=150.79 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=101.6
Q ss_pred CcccEEEEEecCHHHHHHHHh----ccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCC
Q 026534 9 AHRGIGFITFASADSVENLMV----DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 84 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai~----~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 84 (237)
++||||||+|.+.++|++||. ++..|.|++|.|+++.++........
T Consensus 36 ~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~----------------------------- 86 (481)
T TIGR01649 36 PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNS----------------------------- 86 (481)
T ss_pred CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCC-----------------------------
Confidence 367999999999999999992 57899999999999976532111000
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC
Q 026534 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 164 (237)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 164 (237)
. ..........+|||.||++.+++++|+++|+.||.|+.|.|+++.. +++|||+|.+.++|.+|++.++
T Consensus 87 ~-------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Ln 155 (481)
T TIGR01649 87 D-------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALN 155 (481)
T ss_pred c-------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhc
Confidence 0 0000012345799999999999999999999999999999987632 4689999999999999997554
Q ss_pred --ccCC--eEEEEEeccCCC
Q 026534 165 --EICG--QQVAIDSATPLD 180 (237)
Q Consensus 165 --~~~g--~~l~v~~a~~~~ 180 (237)
.|.+ ..|+|.++++..
T Consensus 156 g~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 156 GADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred CCcccCCceEEEEEEecCCC
Confidence 7754 489999987643
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=9.9e-19 Score=152.68 Aligned_cols=133 Identities=27% Similarity=0.486 Sum_probs=109.8
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 86 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 86 (237)
.|.|||||+|.++++|+.|+ |+++.|+|+.|.|+++..+.....-
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g--------------------------------- 604 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG--------------------------------- 604 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc---------------------------------
Confidence 57799999999999999999 7899999999999998722211000
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--
Q 026534 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-- 164 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-- 164 (237)
..........+|+|.|||+.++..+|+.+|..||+|..|+|+.....+.++|||||+|-++.+|.+|+..+.
T Consensus 605 ------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ST 678 (725)
T KOG0110|consen 605 ------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGST 678 (725)
T ss_pred ------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccc
Confidence 011113336799999999999999999999999999999999875556679999999999999999986554
Q ss_pred ccCCeEEEEEeccCCC
Q 026534 165 EICGQQVAIDSATPLD 180 (237)
Q Consensus 165 ~~~g~~l~v~~a~~~~ 180 (237)
.|.|++|.++||....
T Consensus 679 HlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 679 HLYGRRLVLEWAKSDN 694 (725)
T ss_pred ceechhhheehhccch
Confidence 9999999999998644
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.8e-18 Score=145.40 Aligned_cols=125 Identities=19% Similarity=0.383 Sum_probs=110.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|.+|. | |.|||||.|.++++|++|| +|-..|+|++|+|-|+....
T Consensus 30 vc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~------------------------------ 76 (369)
T KOG0123|consen 30 VCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP------------------------------ 76 (369)
T ss_pred EeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC------------------------------
Confidence 34677 6 9999999999999999999 77889999999999887432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
..|||.||+.+++...|.++|+.||.|++|+|..+. .| +++| ||+|++.++|.+
T Consensus 77 -----------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ 130 (369)
T KOG0123|consen 77 -----------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKK 130 (369)
T ss_pred -----------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHH
Confidence 119999999999999999999999999999999994 45 9999 999999999999
Q ss_pred HHhcCC--ccCCeEEEEEeccCCCCCCC
Q 026534 159 VSRRSH--EICGQQVAIDSATPLDDAGP 184 (237)
Q Consensus 159 a~~~~~--~~~g~~l~v~~a~~~~~~~~ 184 (237)
|+..++ .+.++.|.|.....++.+..
T Consensus 131 ai~~~ng~ll~~kki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 131 AIEKLNGMLLNGKKIYVGLFERKEEREA 158 (369)
T ss_pred HHHHhcCcccCCCeeEEeeccchhhhcc
Confidence 997554 88899999999888777653
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=5.8e-19 Score=150.32 Aligned_cols=147 Identities=26% Similarity=0.461 Sum_probs=118.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (237)
||.|+.++++||.|||+|.|.+....|| +.+..+.|.+|.|+.....++.... .
T Consensus 211 iI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~-------------------------~ 265 (549)
T KOG0147|consen 211 IIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAAN-------------------------A 265 (549)
T ss_pred eeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHh-------------------------c
Confidence 6899999999999999999999999999 8999999999999877544332100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHH
Q 026534 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a 159 (237)
++..+. .+ ..-+...|||+||++++++++|+.+|+.||.|..|.+..|..||.++||+||+|.+.++|.+|
T Consensus 266 s~a~~~-----k~----~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 266 SPALQG-----KG----FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred cccccc-----cc----cccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 000000 00 011223399999999999999999999999999999999988999999999999999999999
Q ss_pred HhcCC--ccCCeEEEEEeccCCCC
Q 026534 160 SRRSH--EICGQQVAIDSATPLDD 181 (237)
Q Consensus 160 ~~~~~--~~~g~~l~v~~a~~~~~ 181 (237)
+++++ +|.|+.|+|.....+..
T Consensus 337 ~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 337 LEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHhccceecCceEEEEEeeeecc
Confidence 87655 99999999987655433
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.73 E-value=1.4e-16 Score=140.53 Aligned_cols=173 Identities=14% Similarity=0.220 Sum_probs=109.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccc----cCC--CCCCCCccchhhHH
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVG----RMS--HGGYGAYNAYISAA 72 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~ 72 (237)
|++|+.||+++|||||+|.+.++|.+|| +++..|.|++|.|.++........... ... ..............
T Consensus 218 ~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (457)
T TIGR01622 218 LHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQL 297 (457)
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHH
Confidence 4678899999999999999999999999 789999999999999763221110000 000 00000000000000
Q ss_pred hh----------------------------hhccCCCCC--CCCC------CCCCCCCCCCCCCCCeEEEcCCCCCCC--
Q 026534 73 TR----------------------------YAALGAPTL--YDHP------GSFYGRGESSQRIGKKIFVGRLPQEAT-- 114 (237)
Q Consensus 73 ~r----------------------------~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~l~v~~lp~~~~-- 114 (237)
.. ........+ .... .............+.+|+|.||....+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~ 377 (457)
T TIGR01622 298 MEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEE 377 (457)
T ss_pred HHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccc
Confidence 00 000000000 0000 000000111235678999999955443
Q ss_pred --------HHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 026534 115 --------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (237)
Q Consensus 115 --------~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~ 177 (237)
.+||++.|.+||.|+.|.|... ...|++||+|.++++|++|+..++ .|.|+.|.|.+..
T Consensus 378 ~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 378 EPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred cchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 3689999999999999988633 257999999999999999998766 9999999999864
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=1.5e-16 Score=126.04 Aligned_cols=117 Identities=22% Similarity=0.441 Sum_probs=103.5
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (237)
-|.||||..+++..|+.|| +++-+|+|..|.|+-+.++
T Consensus 35 vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK---------------------------------------- 74 (346)
T KOG0109|consen 35 VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK---------------------------------------- 74 (346)
T ss_pred ecccceEEeecccccHHHHhhcccceecceEEEEEecccc----------------------------------------
Confidence 3779999999999999999 4566999999999888766
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--c
Q 026534 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E 165 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~ 165 (237)
+..+.+|+|+||.+.++.++|+..|++||.|.+|+|++| |+||.|+-.++|..|+..++ +
T Consensus 75 ----------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 75 ----------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred ----------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccc
Confidence 234678999999999999999999999999999999776 99999999999999996544 9
Q ss_pred cCCeEEEEEeccCCCCCCC
Q 026534 166 ICGQQVAIDSATPLDDAGP 184 (237)
Q Consensus 166 ~~g~~l~v~~a~~~~~~~~ 184 (237)
|.|++++|..+.++-...+
T Consensus 137 ~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred cccceeeeeeeccccccCC
Confidence 9999999999987765544
No 30
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=1.4e-16 Score=122.83 Aligned_cols=79 Identities=37% Similarity=0.606 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-ccCCeEEEEEecc
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSAT 177 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~g~~l~v~~a~ 177 (237)
..-.+|||++|+|.+..+.|+++|++||+|++..|+.|+.+++++||+||+|.+.++|..|+++.+ .|+||+..|..|.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 345799999999999999999999999999999999999999999999999999999999999887 9999999888763
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=9.1e-16 Score=129.47 Aligned_cols=83 Identities=24% Similarity=0.403 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
.....++|||++||+++++++|+++|+.||.|+.|+|+.|..++++++||||+|.++++|+.||..++ .|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 45567899999999999999999999999999999999999999999999999999999999997555 8999999999
Q ss_pred eccCC
Q 026534 175 SATPL 179 (237)
Q Consensus 175 ~a~~~ 179 (237)
++.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88763
No 32
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.6e-15 Score=111.81 Aligned_cols=76 Identities=22% Similarity=0.484 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEec
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 176 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~a 176 (237)
..+++|||+|||.++.+.+|+++|.+||.|..|.|..- .....||||+|+++.+|+.||. +...+.|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 34689999999999999999999999999999887543 1246899999999999999996 455999999999997
Q ss_pred c
Q 026534 177 T 177 (237)
Q Consensus 177 ~ 177 (237)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 6
No 33
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=7.3e-15 Score=113.89 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|-|.||+.++++++|+++|..||.|..|.|..|+.||.++|||||.|.++++|++||..++ -++.--|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 4467889999999999999999999999999999999999999999999999999999999997555 66666789999
Q ss_pred ccCC
Q 026534 176 ATPL 179 (237)
Q Consensus 176 a~~~ 179 (237)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 34
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.4e-14 Score=105.80 Aligned_cols=77 Identities=31% Similarity=0.600 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEecc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 177 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~a~ 177 (237)
..++|||+||+..+++.+|+.+|..||.|..|-|... +.+||||||+++.+|+.|+..+ ..|+|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999888776 6789999999999999998654 49999999999987
Q ss_pred CCCC
Q 026534 178 PLDD 181 (237)
Q Consensus 178 ~~~~ 181 (237)
-+..
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5544
No 35
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=5.9e-15 Score=118.81 Aligned_cols=83 Identities=34% Similarity=0.591 Sum_probs=74.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEE
Q 026534 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 172 (237)
Q Consensus 95 ~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~ 172 (237)
.......++|+|+|||+...+.||+.+|++||.|++|.|+.+ +.| +|||+||+|++.++|++|-.++| .+.||+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-ERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-ERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-cCC-CCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 334667799999999999999999999999999999999887 444 89999999999999999998777 89999999
Q ss_pred EEeccCC
Q 026534 173 IDSATPL 179 (237)
Q Consensus 173 v~~a~~~ 179 (237)
|..|.++
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9998765
No 36
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=7e-15 Score=95.64 Aligned_cols=68 Identities=32% Similarity=0.687 Sum_probs=62.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEE
Q 026534 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 172 (237)
Q Consensus 104 l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~ 172 (237)
|||+|||.++++++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|+.|+..++ .+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 778889999999999999999997554 88888775
No 37
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.5e-14 Score=122.88 Aligned_cols=129 Identities=25% Similarity=0.436 Sum_probs=108.9
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (237)
|||| ||+|++.++|++|| +|+..+.+++|.|.....+.....+...
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~------------------------------- 162 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE------------------------------- 162 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-------------------------------
Confidence 9999 99999999999999 7899999999999888776654333221
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--c
Q 026534 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E 165 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~ 165 (237)
.......+||.+++.+++++.|.++|..+|.|..+.++.+ ..+++++|+||.|.++++|..|+..++ .
T Consensus 163 ---------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 163 ---------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred ---------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCc
Confidence 0233467899999999999999999999999999999998 556699999999999999999998665 6
Q ss_pred cCCeEEEEEeccCCC
Q 026534 166 ICGQQVAIDSATPLD 180 (237)
Q Consensus 166 ~~g~~l~v~~a~~~~ 180 (237)
+.+..+.|..+..+.
T Consensus 233 ~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 233 FGDKELYVGRAQKKS 247 (369)
T ss_pred CCccceeecccccch
Confidence 667888888877643
No 38
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6e-15 Score=112.68 Aligned_cols=84 Identities=32% Similarity=0.532 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||++|...+++.-|...|-.||.|+.|.++.|..+++.++|+||+|...|+|.+||.+++ +|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4567899999999999999999999999999999999999999999999999999999999999887 99999999999
Q ss_pred ccCCCC
Q 026534 176 ATPLDD 181 (237)
Q Consensus 176 a~~~~~ 181 (237)
|+|..-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 998653
No 39
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.4e-14 Score=100.45 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~ 175 (237)
...+++|||+||++.++|++|.++|+.+|+|..|.+-.|+.+-.+=|||||+|.+.++|+.||. +...|..++|.|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 4568999999999999999999999999999999999998887788999999999999999996 45589999999999
Q ss_pred ccCC
Q 026534 176 ATPL 179 (237)
Q Consensus 176 a~~~ 179 (237)
..--
T Consensus 113 D~GF 116 (153)
T KOG0121|consen 113 DAGF 116 (153)
T ss_pred cccc
Confidence 7643
No 40
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2.8e-13 Score=107.92 Aligned_cols=85 Identities=21% Similarity=0.384 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
.++-+||||+-|+++++|.+|+..|+.||.|+.|+|+.|..||+++|||||+|++..+..+|.+. ...|.++.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46779999999999999999999999999999999999999999999999999999999999864 4599999999998
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
..-+.-.
T Consensus 178 ERgRTvk 184 (335)
T KOG0113|consen 178 ERGRTVK 184 (335)
T ss_pred ccccccc
Confidence 7655443
No 41
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.53 E-value=1.8e-13 Score=103.75 Aligned_cols=83 Identities=28% Similarity=0.494 Sum_probs=76.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEE
Q 026534 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 172 (237)
Q Consensus 95 ~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~ 172 (237)
.+..+....|-|-||.+.++.++|..+|++||.|-+|.|+.|..|..++|||||.|.+..+|+.|+..+. .|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 3345667899999999999999999999999999999999999999999999999999999999998765 89999998
Q ss_pred EEecc
Q 026534 173 IDSAT 177 (237)
Q Consensus 173 v~~a~ 177 (237)
|.+|.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 88774
No 42
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=1e-13 Score=110.38 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=68.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEeccCC
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPL 179 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~a~~~ 179 (237)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .++||||+|.++++|+.||. +...|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998854 46899999999999999985 455999999999998643
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=6.2e-14 Score=110.12 Aligned_cols=87 Identities=25% Similarity=0.388 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
+...++.|||=.||.+..+.+|-.+|-.||.|.+.+|..|+.|..++.|+||.|+++.++++||..++ .|.-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999998666 8888999999
Q ss_pred eccCCCCCC
Q 026534 175 SATPLDDAG 183 (237)
Q Consensus 175 ~a~~~~~~~ 183 (237)
..+|+...+
T Consensus 361 LKRPkdanR 369 (371)
T KOG0146|consen 361 LKRPKDANR 369 (371)
T ss_pred hcCccccCC
Confidence 999887654
No 44
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.8e-13 Score=89.13 Aligned_cols=68 Identities=38% Similarity=0.657 Sum_probs=59.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEE
Q 026534 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVA 172 (237)
Q Consensus 104 l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~ 172 (237)
|||+|||+++++++|.++|+.||.|..+.+..++. +.++++|||+|.+.++|..|+... ..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999866 888999999999999999998643 488888774
No 45
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.48 E-value=1.9e-13 Score=121.74 Aligned_cols=80 Identities=24% Similarity=0.472 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|.+||.|..|.|+.|..+++++|||||+|.+.++|+.||..++ .|.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3456899999999999999999999999999999999999999999999999999999999997554 89999999986
Q ss_pred cc
Q 026534 176 AT 177 (237)
Q Consensus 176 a~ 177 (237)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 54
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.46 E-value=1.8e-12 Score=109.82 Aligned_cols=135 Identities=22% Similarity=0.327 Sum_probs=101.5
Q ss_pred CCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCC
Q 026534 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT 82 (237)
Q Consensus 4 d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (237)
.+.+|+..|=|||+|.+.+++++|+ .+...+..|-|+|..+.+.+...-....
T Consensus 42 ~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~-------------------------- 95 (510)
T KOG4211|consen 42 PRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPG-------------------------- 95 (510)
T ss_pred eccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCC--------------------------
Confidence 4567999999999999999999999 5666888899999888766543211110
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEE-EEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~-~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
..........|-+++||+.+|++||.+||+..--+.. |.++.+ ..+++.+-|||.|++.+.|+.||.
T Consensus 96 -----------g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 96 -----------GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred -----------CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH
Confidence 0001234567889999999999999999987654444 334444 667789999999999999999997
Q ss_pred cCC-ccCCeEEEEEec
Q 026534 162 RSH-EICGQQVAIDSA 176 (237)
Q Consensus 162 ~~~-~~~g~~l~v~~a 176 (237)
+.. .|.-+-|.|-.+
T Consensus 164 rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 164 RHRENIGHRYIEVFRS 179 (510)
T ss_pred HHHHhhccceEEeehh
Confidence 544 666667777655
No 47
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=2.9e-13 Score=95.91 Aligned_cols=83 Identities=25% Similarity=0.355 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
....+..|||.++...+++++|.+.|..||+|+.+.+..|+.||..+|||+|+|++.++|++|+..++ .|.++.|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 35667899999999999999999999999999999999999999999999999999999999997555 9999999999
Q ss_pred eccCC
Q 026534 175 SATPL 179 (237)
Q Consensus 175 ~a~~~ 179 (237)
|+--+
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 98544
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.46 E-value=2.1e-12 Score=99.59 Aligned_cols=166 Identities=13% Similarity=0.132 Sum_probs=107.5
Q ss_pred CCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccC--CCCCCCCccchhhHHhhhhccCCC
Q 026534 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRM--SHGGYGAYNAYISAATRYAALGAP 81 (237)
Q Consensus 6 ~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~ 81 (237)
.|.+.||-|||.|.+.+.|..|+ +++..+.|+.++|+||..+.........- ............... ........
T Consensus 47 kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~-~~~~~ng~ 125 (221)
T KOG4206|consen 47 KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIK-QPLDTNGH 125 (221)
T ss_pred CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccC-Cccccccc
Confidence 47899999999999999999999 88999999999999998776543321100 000000000000000 00000000
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHH
Q 026534 82 TLY-DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (237)
Q Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~ 160 (237)
... ...............+...||+.|||..++.+.|..+|.+|.....|+++.. ..+.|||+|.+...+..|.
T Consensus 126 ~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~ 200 (221)
T KOG4206|consen 126 FYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQ 200 (221)
T ss_pred ccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhHHHh
Confidence 000 0000000001334667789999999999999999999999998999988876 4679999999988877776
Q ss_pred hcCC---ccCCeEEEEEecc
Q 026534 161 RRSH---EICGQQVAIDSAT 177 (237)
Q Consensus 161 ~~~~---~~~g~~l~v~~a~ 177 (237)
..+. .-....+.|.+++
T Consensus 201 ~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 201 QALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhhccceeccCceEEecccC
Confidence 5433 2237777777664
No 49
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=7.7e-13 Score=103.84 Aligned_cols=76 Identities=24% Similarity=0.266 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEecc
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 177 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~a~ 177 (237)
..+.+|||+||++.+|+++|+++|+.||.|.+|.|+.+.. ..++|||+|+++++++.||. ++..|.+++|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 3568999999999999999999999999999999999843 45799999999999999974 6779999999998754
No 50
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.2e-14 Score=107.88 Aligned_cols=78 Identities=26% Similarity=0.508 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEec
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 176 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a 176 (237)
..+.-|||+|||+.+||.||.-+|++||+|+.|.+++|..||+++||||+.|++-.+..-||.+++ .|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 345789999999999999999999999999999999999999999999999999998888887776 889999999975
No 51
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.43 E-value=2.3e-13 Score=101.19 Aligned_cols=80 Identities=25% Similarity=0.516 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~ 175 (237)
.....+|||+||+..++++.|.++|-+.|.|+.+.+++|+.++..+|||||+|.++++|+-|++ ++-.|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999986 44499999999999
Q ss_pred cc
Q 026534 176 AT 177 (237)
Q Consensus 176 a~ 177 (237)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 52
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.7e-13 Score=105.33 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEeccC
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 178 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~~ 178 (237)
-..+||+-|...++-++|++.|.+||+|.+++|++|..|++++||+||.|.+.++|+.||..++ .|.+|.|+..||.-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 3579999999999999999999999999999999999999999999999999999999997654 99999999999976
Q ss_pred CC
Q 026534 179 LD 180 (237)
Q Consensus 179 ~~ 180 (237)
|.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 53
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=9e-13 Score=111.62 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCH--HHHHHHHhcCC--ccCCeEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE--VVADRVSRRSH--EICGQQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~--~~a~~a~~~~~--~~~g~~l~v 173 (237)
.....+|||+||++.+++++|+.+|..||.|..|.|+ +.+| ||||||+|.+. .++.+||..++ .+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3456799999999999999999999999999999999 4566 89999999987 67888987554 999999999
Q ss_pred EeccC
Q 026534 174 DSATP 178 (237)
Q Consensus 174 ~~a~~ 178 (237)
..|+|
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99987
No 54
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.41 E-value=5.6e-12 Score=107.67 Aligned_cols=82 Identities=27% Similarity=0.440 Sum_probs=68.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-CCccCCeEEEEEeccCC
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSATPL 179 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~g~~l~v~~a~~~ 179 (237)
..+|||.|||.+++..+|+++|.+||.|+...|..-...++..+|+||+|.+.++++.||+. ...|.+++|.|+..++.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 44599999999999999999999999999877766544455559999999999999999974 45899999999987765
Q ss_pred CCC
Q 026534 180 DDA 182 (237)
Q Consensus 180 ~~~ 182 (237)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 443
No 55
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.40 E-value=4.9e-12 Score=105.69 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-cCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~-~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
.....+||.|||+++.|++|+++|. +.|+|++|.++.| .++++++||.|||+++|.+++|+++++ ++.|++|+|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3445699999999999999999995 7899999999999 789999999999999999999998765 89999999987
Q ss_pred ccC
Q 026534 176 ATP 178 (237)
Q Consensus 176 a~~ 178 (237)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 543
No 56
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=4.5e-11 Score=89.36 Aligned_cols=126 Identities=22% Similarity=0.322 Sum_probs=91.5
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (237)
.-.||||+|+++.+|+.|| .++..++|..|+|+++..-.........-...+.+ ..
T Consensus 44 ~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrg----------------------Gg 101 (241)
T KOG0105|consen 44 PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRG----------------------GG 101 (241)
T ss_pred CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCC----------------------CC
Confidence 3579999999999999999 68999999999999986543211111100000000 00
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC
Q 026534 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 164 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 164 (237)
........+......+|.|.+||++.+|+||++...+-|.|....+.+| +++.|+|...++.+-||.++.
T Consensus 102 g~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 102 GGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred CCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 0001111223455678999999999999999999999999999999887 578999999999999987544
No 57
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=3.1e-12 Score=82.79 Aligned_cols=70 Identities=37% Similarity=0.720 Sum_probs=62.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 103 ~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
+|||.|||..+++++|+++|.+||.|..+.+..+. +.++++|||+|.+.++|+.|+..++ .+.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 6678999999999999999987544 7888888763
No 58
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.1e-12 Score=109.41 Aligned_cols=85 Identities=25% Similarity=0.454 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC---ccC--CeEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EIC--GQQVA 172 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---~~~--g~~l~ 172 (237)
....-+|||+-+|..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.++++|.+|+..+| .|. ..+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4556799999999999999999999999999999999999999999999999999999999987665 443 46789
Q ss_pred EEeccCCCCC
Q 026534 173 IDSATPLDDA 182 (237)
Q Consensus 173 v~~a~~~~~~ 182 (237)
|++|....++
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9998766554
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.38 E-value=2.8e-12 Score=109.91 Aligned_cols=169 Identities=17% Similarity=0.255 Sum_probs=104.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCc---------cccCCCCCCCCccchh
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRP---------VGRMSHGGYGAYNAYI 69 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~---------~~~~~~~~~~~~~~~~ 69 (237)
|++|..||++||||||+|.+.++|++|+ +|+.+|-|+.|+|...+.+-..... ...... ..+... ..
T Consensus 310 l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl-~~~~~g-~~ 387 (549)
T KOG0147|consen 310 LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGL-SLGSGG-RN 387 (549)
T ss_pred eccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhcccc-cccccc-HH
Confidence 4688889999999999999999999998 7899999999999765433222110 000000 000000 11
Q ss_pred hHHhhhhccCCCC----------------C-CCCCCCCCCCCCCC-------CCCCCeEEEcCCC--CC-----CC---H
Q 026534 70 SAATRYAALGAPT----------------L-YDHPGSFYGRGESS-------QRIGKKIFVGRLP--QE-----AT---A 115 (237)
Q Consensus 70 ~~~~r~~~~~~~~----------------~-~~~~~~~~~~~~~~-------~~~~~~l~v~~lp--~~-----~~---~ 115 (237)
+...+.+...... . .............+ ..++.++.+.|+= .. +. .
T Consensus 388 Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~ 467 (549)
T KOG0147|consen 388 QLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIR 467 (549)
T ss_pred HHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHH
Confidence 1111111111000 0 00000000011111 2556777777772 22 21 2
Q ss_pred HHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEec
Q 026534 116 EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 176 (237)
Q Consensus 116 ~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a 176 (237)
+++.+.+.+||.|..|.|..+ +-|+.||.|.+.+.|..|+..+| +|.|+.|.+.+.
T Consensus 468 edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 567777889999988888665 45899999999999999998887 999999999874
No 60
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.1e-11 Score=103.87 Aligned_cols=79 Identities=27% Similarity=0.547 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--cc-CCeEEEEEe
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI-CGQQVAIDS 175 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~-~g~~l~v~~ 175 (237)
..++.|||+.||.++.|++|..+|++.|.|-+++|+.|+.+|.++|||||.|.+.++|+.||..++ +| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 568999999999999999999999999999999999999999999999999999999999997655 44 588888775
Q ss_pred cc
Q 026534 176 AT 177 (237)
Q Consensus 176 a~ 177 (237)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 53
No 61
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=6e-12 Score=81.09 Aligned_cols=69 Identities=35% Similarity=0.640 Sum_probs=61.8
Q ss_pred EcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 106 VGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 106 v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
|+|||..+++++|+++|++||.|..+.+..+..++.++++|||+|.+.++|..|+..++ .+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887788899999999999999999997654 7788888763
No 62
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=4e-12 Score=109.21 Aligned_cols=82 Identities=30% Similarity=0.552 Sum_probs=77.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEeccCC
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 179 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~~~ 179 (237)
..|||+|+|+++++++|.++|+..|.|.+++++.|++||+++||+|++|.+.++|+.|+.+++ ++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999998766 999999999998766
Q ss_pred CCCC
Q 026534 180 DDAG 183 (237)
Q Consensus 180 ~~~~ 183 (237)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5543
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=1e-11 Score=101.39 Aligned_cols=78 Identities=35% Similarity=0.656 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEeccC
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 178 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~~ 178 (237)
..+|||+|||..+++++|.++|.+||.|..+.+..++.++.++++|||+|.+.++|..|+..++ .|.++.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999997655 89999999999654
No 64
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=1.5e-11 Score=83.29 Aligned_cols=79 Identities=16% Similarity=0.388 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
.....-|||.|||+.+|.++..++|.+||.|..|+|-.... -+|-|||.|++..+|.+|+..+. .++++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34467899999999999999999999999999999977654 47899999999999999997655 88999999988
Q ss_pred ccCC
Q 026534 176 ATPL 179 (237)
Q Consensus 176 a~~~ 179 (237)
-.+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 6654
No 65
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.29 E-value=4.3e-12 Score=100.94 Aligned_cols=70 Identities=30% Similarity=0.704 Sum_probs=66.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEeccCC
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 179 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~~~ 179 (237)
.+|||+|||..+++.+|+.+|++||+|++|.|+++ |+||+.++...++.||.++| .|.|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999886 99999999999999999988 899999999998877
No 66
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=3.6e-11 Score=78.14 Aligned_cols=72 Identities=35% Similarity=0.689 Sum_probs=63.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 103 ~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
+|+|++||..+++++|+++|+.+|.|..+.+..+..+ .++++|||+|.+.++|..|+..++ .+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887554 578999999999999999997655 57898888864
No 67
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.23 E-value=2.1e-10 Score=95.28 Aligned_cols=150 Identities=12% Similarity=0.131 Sum_probs=112.2
Q ss_pred cEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCCCC
Q 026534 12 GIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGS 89 (237)
Q Consensus 12 G~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 89 (237)
--|.|+++|...|+.|+ ++++.|.|++|+|.++.... ...+..+...........+...+|+...++-..+..
T Consensus 336 d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~--vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni--- 410 (492)
T KOG1190|consen 336 DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN--VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNI--- 410 (492)
T ss_pred cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc--ccCCCCCCccccccccCCCCchhhccCccccccccc---
Confidence 46999999999999999 88999999999997765443 223333333344455566677777777776555555
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccC
Q 026534 90 FYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC 167 (237)
Q Consensus 90 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~ 167 (237)
..++.+|++.|+|.+++|++|+.+|..-|-........ ++.+.++.+.+++.|+|..|+..+| .+.
T Consensus 411 --------~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lg 478 (492)
T KOG1190|consen 411 --------FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLG 478 (492)
T ss_pred --------CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCC
Confidence 56788999999999999999999998877554332222 2256799999999999999987775 554
Q ss_pred -CeEEEEEeccC
Q 026534 168 -GQQVAIDSATP 178 (237)
Q Consensus 168 -g~~l~v~~a~~ 178 (237)
+..++|++++.
T Consensus 479 en~hlRvSFSks 490 (492)
T KOG1190|consen 479 ENHHLRVSFSKS 490 (492)
T ss_pred CCceEEEEeecc
Confidence 45899998875
No 68
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=5.9e-11 Score=92.34 Aligned_cols=130 Identities=24% Similarity=0.389 Sum_probs=96.4
Q ss_pred ccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCCC
Q 026534 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 88 (237)
-||+||+|.+.-+|+.|| +++.+|.+..+.|.++.......... .+.....
T Consensus 35 ~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~-----~~g~r~~---------------------- 87 (216)
T KOG0106|consen 35 NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRP-----RGGDRRS---------------------- 87 (216)
T ss_pred cccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCC-----CCCCccc----------------------
Confidence 579999999999999999 78889999888888887543222000 0000000
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--cc
Q 026534 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 166 (237)
Q Consensus 89 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~ 166 (237)
.......+....+.|.|.+++..+.|++|.+.|.++|++....+ ..+++||+|.+.+++..|+..++ .+
T Consensus 88 -~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~ 158 (216)
T KOG0106|consen 88 -DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKL 158 (216)
T ss_pred -hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhh
Confidence 00111122556788999999999999999999999998854444 34689999999999999998766 89
Q ss_pred CCeEEEEEec
Q 026534 167 CGQQVAIDSA 176 (237)
Q Consensus 167 ~g~~l~v~~a 176 (237)
.+++|.+...
T Consensus 159 ~~~~l~~~~~ 168 (216)
T KOG0106|consen 159 NGRRISVEKN 168 (216)
T ss_pred cCceeeeccc
Confidence 9999999543
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.16 E-value=4.1e-11 Score=98.84 Aligned_cols=84 Identities=42% Similarity=0.666 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEeccC
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATP 178 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~a~~ 178 (237)
..++|||++|+|.++++.|++.|.+||+|..|.+++|+.++++++|+||+|.+.+...++|. ..|.|.++.|.+..|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 57899999999999999999999999999999999999999999999999999998888876 46799999999999998
Q ss_pred CCCCC
Q 026534 179 LDDAG 183 (237)
Q Consensus 179 ~~~~~ 183 (237)
+....
T Consensus 85 r~~~~ 89 (311)
T KOG4205|consen 85 REDQT 89 (311)
T ss_pred ccccc
Confidence 87544
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=2.2e-10 Score=93.36 Aligned_cols=78 Identities=26% Similarity=0.483 Sum_probs=69.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC---ccCCeEE
Q 026534 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EICGQQV 171 (237)
Q Consensus 95 ~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---~~~g~~l 171 (237)
.++.....+|||++|-..+++.+|++.|.+||+|.++.+... +++|||+|.+.++|+.|.++.. .|.|.+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 344566789999999999999999999999999999988774 5799999999999999986543 8899999
Q ss_pred EEEeccC
Q 026534 172 AIDSATP 178 (237)
Q Consensus 172 ~v~~a~~ 178 (237)
+|.|..+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999998
No 71
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=9.7e-11 Score=92.35 Aligned_cols=83 Identities=24% Similarity=0.421 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC---ccC--CeEEEEE
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EIC--GQQVAID 174 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---~~~--g~~l~v~ 174 (237)
..++|||+.|...-.|+|++.+|..||.|.+|.+.+. ..+.++||+||.|.+..+|++||..+| .+- ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 4679999999999999999999999999999999887 567799999999999999999998776 333 4578999
Q ss_pred eccCCCCCC
Q 026534 175 SATPLDDAG 183 (237)
Q Consensus 175 ~a~~~~~~~ 183 (237)
++...+++.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 998776653
No 72
>smart00361 RRM_1 RNA recognition motif.
Probab=99.12 E-value=3e-10 Score=73.93 Aligned_cols=59 Identities=27% Similarity=0.335 Sum_probs=50.4
Q ss_pred HHHHHHHHh----cCCcEEEEE-eecCCCC--CCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEE
Q 026534 115 AEDLRRYFS----RFGRILDVY-VPKDPKR--TGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 173 (237)
Q Consensus 115 ~~~l~~~F~----~~G~i~~~~-v~~~~~~--~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v 173 (237)
+++|+++|+ +||.|..|. |..+..+ +.++|++||+|.+.++|.+|+..++ .+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999885 6666555 8899999999999999999997655 889998876
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.12 E-value=1.8e-09 Score=90.59 Aligned_cols=169 Identities=18% Similarity=0.269 Sum_probs=105.5
Q ss_pred CCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCC-Ccccc---------------------CCCCCC
Q 026534 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDF-RPVGR---------------------MSHGGY 62 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~-~~~~~---------------------~~~~~~ 62 (237)
+|++||||.|+|+++|.+++|+ ++.+++.||+|.|+.-......+ ....+ ....+.
T Consensus 82 ~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG 161 (608)
T KOG4212|consen 82 SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGG 161 (608)
T ss_pred CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCc
Confidence 5999999999999999999999 78999999999997654322111 00000 000000
Q ss_pred CCccc-hhhHHhhhhc-cCCCCCCC-------------CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCc
Q 026534 63 GAYNA-YISAATRYAA-LGAPTLYD-------------HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR 127 (237)
Q Consensus 63 ~~~~~-~~~~~~r~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~ 127 (237)
..... .....++..- .+..++.+ .............+.-.++||.||.+.+....|++.|.--|.
T Consensus 162 ~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk 241 (608)
T KOG4212|consen 162 DRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK 241 (608)
T ss_pred cccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee
Confidence 00000 0000001000 00000000 000111111122344568999999999999999999998999
Q ss_pred EEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEec
Q 026534 128 ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 176 (237)
Q Consensus 128 i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a 176 (237)
|..|.+-.|+. +.++++|.++|..+-+|..||..+. .+..++..+...
T Consensus 242 v~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 242 VQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred eeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 99998888855 4789999999999988888876443 666666666653
No 74
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.4e-10 Score=94.76 Aligned_cols=83 Identities=24% Similarity=0.398 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
.++.+.|||--|.+-++.++|.-+|+.||.|..|.|++|..||.+-.||||+|++.+++++|.-++. -|.++.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 5567899999999999999999999999999999999999999999999999999999999987765 78899999998
Q ss_pred ccCCC
Q 026534 176 ATPLD 180 (237)
Q Consensus 176 a~~~~ 180 (237)
+++-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 76543
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=4.7e-10 Score=69.62 Aligned_cols=54 Identities=30% Similarity=0.551 Sum_probs=46.9
Q ss_pred HHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEec
Q 026534 118 LRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 176 (237)
Q Consensus 118 l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~a 176 (237)
|.++|++||.|..+.+..+. +++|||+|.+.++|..|+.. ...+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997763 58999999999999999974 44899999999985
No 76
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.10 E-value=2.4e-09 Score=82.47 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=87.3
Q ss_pred CCcccEEEEEecCHHHHHHHH--hccceeC---CcEEEEeecCCCCCCCCccccCCCCCCCCccc--hhhHHhhhhccCC
Q 026534 8 KAHRGIGFITFASADSVENLM--VDTHELG---GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNA--YISAATRYAALGA 80 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai--~~~~~~~---gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~ 80 (237)
...+=+|||+|.+..+|.+|+ +|+..|+ +..|.|+.+.+..+..+............... +.....+......
T Consensus 74 ~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qh 153 (284)
T KOG1457|consen 74 QVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQH 153 (284)
T ss_pred ccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhc
Confidence 345569999999999999999 7888774 57788888876555443322221111110000 0000000111100
Q ss_pred CCCCCCCCCCC------------------------------------CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhc
Q 026534 81 PTLYDHPGSFY------------------------------------GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSR 124 (237)
Q Consensus 81 ~~~~~~~~~~~------------------------------------~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~ 124 (237)
......+.... .........-.+|||.||..+++|++|+.+|+.
T Consensus 154 d~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~ 233 (284)
T KOG1457|consen 154 DEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR 233 (284)
T ss_pred cccccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh
Confidence 00000000000 000011222358999999999999999999999
Q ss_pred CCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc
Q 026534 125 FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (237)
Q Consensus 125 ~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 162 (237)
|-....++|... + ....||++|++.+.|..|+..
T Consensus 234 ~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 234 YPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHH
Confidence 986665555332 2 346899999999999998753
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=7.7e-10 Score=97.70 Aligned_cols=163 Identities=18% Similarity=0.229 Sum_probs=97.9
Q ss_pred EEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCC-CCC--CC
Q 026534 14 GFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL-YDH--PG 88 (237)
Q Consensus 14 aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~--~~ 88 (237)
|.|+|.+..+|++|. ++-..+..-++.+.|+-.......+..-.-. .............+......+.. ... ..
T Consensus 424 aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~-~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ 502 (725)
T KOG0110|consen 424 AIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLS-AESRSKMEENPSERVSAEDGQVEEDKDPTEE 502 (725)
T ss_pred eeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccc-cccccccccCcceecccccccccccCCcccc
Confidence 899999999999999 6666777777777766322111000000000 00000000000000000000000 000 00
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCC---CCcceEEEEEcCHHHHHHHHhc--C
Q 026534 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRT---GHRGFGFVTFAEEVVADRVSRR--S 163 (237)
Q Consensus 89 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~---~~~g~afv~f~~~~~a~~a~~~--~ 163 (237)
.............++|||.||+++++.++|...|...|.|+.|.|...+... .+.||+||+|.+.++|++|+.. +
T Consensus 503 ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 503 SSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred ccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC
Confidence 0000011111222339999999999999999999999999999887654321 2569999999999999999976 4
Q ss_pred CccCCeEEEEEecc
Q 026534 164 HEICGQQVAIDSAT 177 (237)
Q Consensus 164 ~~~~g~~l~v~~a~ 177 (237)
+.|.|+.|.|+++.
T Consensus 583 tvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 583 TVLDGHKLELKISE 596 (725)
T ss_pred ceecCceEEEEecc
Confidence 59999999999987
No 78
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=3.9e-10 Score=97.74 Aligned_cols=153 Identities=19% Similarity=0.290 Sum_probs=103.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
+++|..||.||||||.+|.++.....|| ++++.+.+++|.|+.+............... .
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~------~------------ 382 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQ------S------------ 382 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccc------c------------
Confidence 5789999999999999999999999999 8899999999999998765543332221000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCC--CCCC-CH-------HHHHHHHhcCCcEEEEEeecCCCCC---CCcce
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRL--PQEA-TA-------EDLRRYFSRFGRILDVYVPKDPKRT---GHRGF 145 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l--p~~~-~~-------~~l~~~F~~~G~i~~~~v~~~~~~~---~~~g~ 145 (237)
+...-..........++..|.+.|+ |.++ ++ ++++..+.+||.|..|.|+++.... -.-|.
T Consensus 383 ------~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~Gk 456 (500)
T KOG0120|consen 383 ------QVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGK 456 (500)
T ss_pred ------ccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCccc
Confidence 0000000000011233444444444 1111 22 4556667889999999998873222 23577
Q ss_pred EEEEEcCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 026534 146 GFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (237)
Q Consensus 146 afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~ 177 (237)
.||+|.+.++|+.|...++ .|.++.|.+.|-.
T Consensus 457 VFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 457 VFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred EEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 8999999999999998766 9999999988743
No 79
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.2e-10 Score=95.58 Aligned_cols=79 Identities=24% Similarity=0.483 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~ 177 (237)
-.++|||+.+.+.+.|+.|+..|..||.|++|.+.-|..|++.++||||+|+-+|.|+-|++.++ .+.|+.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 46899999999999999999999999999999999999999999999999999999999998665 8899999998544
Q ss_pred C
Q 026534 178 P 178 (237)
Q Consensus 178 ~ 178 (237)
.
T Consensus 192 N 192 (544)
T KOG0124|consen 192 N 192 (544)
T ss_pred C
Confidence 3
No 80
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=3e-10 Score=98.45 Aligned_cols=150 Identities=19% Similarity=0.300 Sum_probs=112.8
Q ss_pred CCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCC
Q 026534 7 SKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 85 (237)
..+.+.|||++|.+.++|..|+ .++..+.|+.+.+...........-.....+ .+ .
T Consensus 219 ~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~------------------~~-----~ 275 (500)
T KOG0120|consen 219 LNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQ------------------LG-----K 275 (500)
T ss_pred ecccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhcc------------------cc-----c
Confidence 4578899999999999999999 7788899999988666544322211100000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-
Q 026534 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH- 164 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~- 164 (237)
.. .............++||++||..+++.++++++..||.+....++.+..++.+++|||.+|.+......|+..++
T Consensus 276 ~~--~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnG 353 (500)
T KOG0120|consen 276 VG--LLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNG 353 (500)
T ss_pred cC--CcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccch
Confidence 00 000111124556899999999999999999999999999999999999999999999999999999999987555
Q ss_pred -ccCCeEEEEEeccCCCC
Q 026534 165 -EICGQQVAIDSATPLDD 181 (237)
Q Consensus 165 -~~~g~~l~v~~a~~~~~ 181 (237)
.+.++.|.|..|.....
T Consensus 354 m~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 354 MQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred hhhcCceeEeehhhccch
Confidence 88889999998765443
No 81
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.07 E-value=8.4e-09 Score=87.85 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=55.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-ccCCeEEEEE
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAID 174 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~g~~l~v~ 174 (237)
+..++.++||+..++.+|..+|+..-.+ .|.|... .+++..+-|+|+|.+.++|..|+.+.. .+..+-|.+-
T Consensus 281 g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElF 353 (510)
T KOG4211|consen 281 GHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELF 353 (510)
T ss_pred CceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhhccCCcccCcceeeec
Confidence 3678889999999999999999865544 4555444 568889999999999999999997544 4444444443
No 82
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.06 E-value=2.9e-10 Score=84.46 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=45.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.|+++||||||+|.+.++|++|| +++++|+|++|+|.++.++...
T Consensus 66 i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~~ 117 (144)
T PLN03134 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 117 (144)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCCC
Confidence 5789999999999999999999999999 6899999999999999876543
No 83
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.03 E-value=1.8e-09 Score=96.27 Aligned_cols=77 Identities=21% Similarity=0.438 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
...+.||||+.|+.++++.||..+|+.||+|.+|.++. +++||||.+....+|.+|+.++. .+.++.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 44568999999999999999999999999999998877 58999999999999999998765 88899999999
Q ss_pred ccCCC
Q 026534 176 ATPLD 180 (237)
Q Consensus 176 a~~~~ 180 (237)
+..+-
T Consensus 492 a~g~G 496 (894)
T KOG0132|consen 492 AVGKG 496 (894)
T ss_pred eccCC
Confidence 97653
No 84
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.01 E-value=1.7e-09 Score=82.38 Aligned_cols=82 Identities=20% Similarity=0.425 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC-CcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRF-GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~-G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
.....-+||..+|..+.+.+|..+|.+| |.+..+++.+++.||.+++||||+|++.+.|..|.+.|+ -|.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4445678999999999999999999988 677888888999999999999999999999999988776 6678888888
Q ss_pred eccCC
Q 026534 175 SATPL 179 (237)
Q Consensus 175 ~a~~~ 179 (237)
+..|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 86554
No 85
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.94 E-value=1.4e-09 Score=85.33 Aligned_cols=135 Identities=21% Similarity=0.316 Sum_probs=103.5
Q ss_pred CCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCC
Q 026534 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (237)
Q Consensus 3 ~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (237)
+|.. +.-++++|+.|.+.+.-.++. .++..+.-..|++...++.++..
T Consensus 133 ~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPs----------------------------- 182 (290)
T KOG0226|consen 133 RDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPS----------------------------- 182 (290)
T ss_pred hcCC-CccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcc-----------------------------
Confidence 3443 677889999999988888887 34555555555554444332210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHH
Q 026534 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~ 160 (237)
-........+||++.|.-+++.+.|-..|.+|-.....++++|+.|++++||+||.|.+..++..|+
T Consensus 183 -------------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 183 -------------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAM 249 (290)
T ss_pred -------------cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHH
Confidence 1112456789999999999999999999999988878899999999999999999999999999999
Q ss_pred hcCC--ccCCeEEEEEeccCCC
Q 026534 161 RRSH--EICGQQVAIDSATPLD 180 (237)
Q Consensus 161 ~~~~--~~~g~~l~v~~a~~~~ 180 (237)
..+. .+..++|++....-++
T Consensus 250 rem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 250 REMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HhhcccccccchhHhhhhhHHh
Confidence 7554 7888888887655443
No 86
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.93 E-value=5e-09 Score=81.06 Aligned_cols=79 Identities=29% Similarity=0.488 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEE
Q 026534 100 IGKKIFVGRLPQEATAEDLRR----YFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 173 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~----~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v 173 (237)
+..+|||.||...+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|-.|+..++ .+.|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 999999998886654 46689999999999999999997665 889999999
Q ss_pred EeccCCCC
Q 026534 174 DSATPLDD 181 (237)
Q Consensus 174 ~~a~~~~~ 181 (237)
.||..+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99977643
No 87
>smart00361 RRM_1 RNA recognition motif.
Probab=98.87 E-value=3.3e-09 Score=68.97 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=36.4
Q ss_pred CCCCCC--CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEE
Q 026534 2 PKDQGS--KAHRGIGFITFASADSVENLM--VDTHELGGSTVVV 41 (237)
Q Consensus 2 ~~d~~t--g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v 41 (237)
+.|+.| +.+||||||+|.+.++|.+|+ +++.++.|+.|.+
T Consensus 26 ~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 26 YIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred EeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 566766 999999999999999999999 7899999999976
No 88
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.87 E-value=1.4e-08 Score=87.99 Aligned_cols=82 Identities=26% Similarity=0.572 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
...+..|||.+|+..+...+|+.+|++||.|+-.+|+++..+.-.+.|+||++.+.++|.+||..+| +|.|+-|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 4556799999999999999999999999999999999987777789999999999999999999988 99999999998
Q ss_pred ccCC
Q 026534 176 ATPL 179 (237)
Q Consensus 176 a~~~ 179 (237)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8653
No 89
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.86 E-value=3.2e-09 Score=87.73 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=99.7
Q ss_pred CCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCC
Q 026534 6 GSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 84 (237)
Q Consensus 6 ~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 84 (237)
..|+..|=|||.|..+++|+.|+ .+...|+-|.|++.+++..+..+ ...|.....- ...
T Consensus 201 pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqq-------------------vlnr~~s~pL-i~~ 260 (508)
T KOG1365|consen 201 PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQ-------------------VLNREVSEPL-IPG 260 (508)
T ss_pred CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH-------------------HHHhhccccc-cCC
Confidence 35889999999999999999999 44556666778886665432211 1111111100 000
Q ss_pred CCCCCC---CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-cEEE--EEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 85 DHPGSF---YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILD--VYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 85 ~~~~~~---~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G-~i~~--~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
..+... ...-.+......+|-+++||+..+.++|.+||..|- .|.. |.++.+ ..|++.|-|||+|.+.++|.+
T Consensus 261 ~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~a 339 (508)
T KOG1365|consen 261 LTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARA 339 (508)
T ss_pred CCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHH
Confidence 000000 111122233367899999999999999999999886 4444 677776 457788999999999999999
Q ss_pred HHhcCC-cc-CCeEEEEEecc
Q 026534 159 VSRRSH-EI-CGQQVAIDSAT 177 (237)
Q Consensus 159 a~~~~~-~~-~g~~l~v~~a~ 177 (237)
|..+.| .+ ..+-|.|-.+.
T Consensus 340 aaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 340 AAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred HHHHHHHhhcccceEEEeecc
Confidence 987665 33 36677776543
No 90
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.86 E-value=9.7e-09 Score=84.49 Aligned_cols=140 Identities=21% Similarity=0.281 Sum_probs=107.0
Q ss_pred CCCCCcccEEEEEecCHHHHHHHH-hcc-ceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCC
Q 026534 5 QGSKAHRGIGFITFASADSVENLM-VDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT 82 (237)
Q Consensus 5 ~~tg~skG~aFV~F~~~~~A~~Ai-~~~-~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (237)
..+..++|++.|.|+..+.+..|+ +.. ..+.++.+..-.............
T Consensus 124 ~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~--------------------------- 176 (285)
T KOG4210|consen 124 EDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKL--------------------------- 176 (285)
T ss_pred ccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchh---------------------------
Confidence 446789999999999999999999 555 466666665544433321100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEE-EcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 83 LYDHPGSFYGRGESSQRIGKKIF-VGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~-v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
.........++| |++|+..+++++|+..|..+|.|..+++..+..++..+++++|+|.+...+..++.
T Consensus 177 -----------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 177 -----------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred -----------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 000122345566 99999999999999999999999999999999999999999999999999999987
Q ss_pred c-CCccCCeEEEEEeccCCCCC
Q 026534 162 R-SHEICGQQVAIDSATPLDDA 182 (237)
Q Consensus 162 ~-~~~~~g~~l~v~~a~~~~~~ 182 (237)
. ...+.++++.+....+....
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 246 DQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred cccCcccCcccccccCCCCccc
Confidence 4 44888999999998876554
No 91
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.85 E-value=1.9e-09 Score=82.09 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=42.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
|++|+-|+.++|||||.|-+..+|+.|+ |++.+|+|+.|.|+.|.
T Consensus 45 IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 45 IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 7899999999999999999999999999 89999999999998874
No 92
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=1.8e-09 Score=83.87 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=41.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHHhc-cceeCCcEEEEeecCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATP 46 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai~~-~~~~~gr~i~v~~a~~ 46 (237)
||.|+.||+|||||||+|+|.++|.+||.+ .-.|+||+..|..|.-
T Consensus 44 vitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 44 VITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 689999999999999999999999999965 5689999999988754
No 93
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.77 E-value=5.6e-08 Score=79.16 Aligned_cols=112 Identities=23% Similarity=0.387 Sum_probs=78.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCC--CCCCCCccccCCCCCCCCccchhhHHhhhh
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP--KEDDFRPVGRMSHGGYGAYNAYISAATRYA 76 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 76 (237)
|+.|+.|++++|||||+|.+.++|..|+ +++..|.|++|.|.++.+ ......... ......
T Consensus 147 ~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~---- 211 (306)
T COG0724 147 LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNN-----------LDASFA---- 211 (306)
T ss_pred eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccc-----------cchhhh----
Confidence 4678889999999999999999999999 678999999999999764 111100000 000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCC
Q 026534 77 ALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK 138 (237)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~ 138 (237)
................+++.+++..++..++...|..+|.+....+.....
T Consensus 212 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 212 -----------KKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred -----------ccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 000111112245577899999999999999999999999987776665533
No 94
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.74 E-value=5.2e-08 Score=77.63 Aligned_cols=83 Identities=23% Similarity=0.355 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
.....+|+|.|||+.++++||+++|..||.++.+.|..+ .+|.+.|.|-|.|...++|..|++..+ .|.|+.+++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344578999999999999999999999999988888888 678899999999999999999998665 88999999987
Q ss_pred ccCCCC
Q 026534 176 ATPLDD 181 (237)
Q Consensus 176 a~~~~~ 181 (237)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 655433
No 95
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.4e-08 Score=78.21 Aligned_cols=49 Identities=35% Similarity=0.615 Sum_probs=45.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|+.|.+|+++||||||+|...+||.+|| ||..+|.||.|+|.+|.|..-
T Consensus 42 iPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 42 IPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKI 92 (298)
T ss_pred cccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccc
Confidence 5789999999999999999999999999 789999999999999988654
No 96
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.60 E-value=1.5e-06 Score=71.32 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=100.1
Q ss_pred CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHh--hhhccCCCCC
Q 026534 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAAT--RYAALGAPTL 83 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~ 83 (237)
|+-||=|.+.|.-.++++.|| ++...|.|++|+|+.|.-..+......... ...+....... +......
T Consensus 180 G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~----k~k~~~~kk~~k~q~k~~dw--- 252 (382)
T KOG1548|consen 180 GKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKE----KGKCKDKKKLKKQQQKLLDW--- 252 (382)
T ss_pred CCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCccccc----ccccccHHHHHHHHHhhccc---
Confidence 678999999999999999999 789999999999999864433222111111 00011111111 1110110
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEcCCC----CCCC-------HHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcC
Q 026534 84 YDHPGSFYGRGESSQRIGKKIFVGRLP----QEAT-------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 152 (237)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~v~~lp----~~~~-------~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~ 152 (237)
.... .........++|.|.||= ...+ +++|.+...+||.|..|.|.-. .+.|.+-|.|.+
T Consensus 253 ----~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n 323 (382)
T KOG1548|consen 253 ----RPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRN 323 (382)
T ss_pred ----CCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCC
Confidence 0000 112224456788888882 2233 4566677899999998877533 267899999999
Q ss_pred HHHHHHHHhcCC--ccCCeEEEEEecc
Q 026534 153 EVVADRVSRRSH--EICGQQVAIDSAT 177 (237)
Q Consensus 153 ~~~a~~a~~~~~--~~~g~~l~v~~a~ 177 (237)
.++|..||+.++ .|.|+.|....-.
T Consensus 324 ~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 324 NEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred hHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 999999998666 9999999887643
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=7e-08 Score=75.31 Aligned_cols=70 Identities=33% Similarity=0.728 Sum_probs=60.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEeccCC
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 179 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~~~ 179 (237)
.++||++||+.+.+.+|++||..||+|..|.+. .+|+||+|++..+|..||..++ +|++..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999988773 3689999999999999986544 888888888887743
No 98
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=9.6e-08 Score=76.73 Aligned_cols=47 Identities=17% Similarity=0.401 Sum_probs=42.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
||+|+.||+|||||||+|++..+...|. .++.+|+|+.|.|.+-..+
T Consensus 133 lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgR 181 (335)
T KOG0113|consen 133 LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGR 181 (335)
T ss_pred EeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecccc
Confidence 6899999999999999999999999999 5688999999999876544
No 99
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.52 E-value=4.7e-07 Score=72.27 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=75.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEe
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 175 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~ 175 (237)
.......+||+|+.+.++.++++..|+.||.|..+.|+.|..++.+++|+||+|.+.+.++.++. +...|.++.+.|.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 35667899999999999999999999999999999999999888899999999999999999997 55699999999998
Q ss_pred ccCC
Q 026534 176 ATPL 179 (237)
Q Consensus 176 a~~~ 179 (237)
..-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7655
No 100
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.50 E-value=1.3e-07 Score=72.28 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=42.4
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
-|++.||.|||||||+|.+++.|..|- ||+..|.++-|.|.+.-|.
T Consensus 83 sRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 83 SRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred ecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 478899999999999999999999999 8999999999999887765
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.44 E-value=6.9e-06 Score=68.20 Aligned_cols=141 Identities=14% Similarity=0.036 Sum_probs=88.6
Q ss_pred ccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCCC
Q 026534 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 88 (237)
.|-|.|++.|..+.++|+ +++..+.|.+|.|+.+...-......--.......-+....+.-.|+...
T Consensus 325 ~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp---------- 394 (494)
T KOG1456|consen 325 PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSP---------- 394 (494)
T ss_pred cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCCh----------
Confidence 478999999999999999 88888999999998775432221111111111111111111111111100
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC
Q 026534 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 164 (237)
Q Consensus 89 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 164 (237)
.....+.-..+++.|..-|.|..+||+.|-++|..-. ...+|+|...+ +.++ .-+.+||++.++|..||..++
T Consensus 395 -~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-serS-ssGllEfe~~s~Aveal~~~N 468 (494)
T KOG1456|consen 395 -EQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SERS-SSGLLEFENKSDAVEALMKLN 468 (494)
T ss_pred -hHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-cccc-ccceeeeehHHHHHHHHHHhc
Confidence 0111122255688999999999999999999997655 24567776654 3322 347999999999999986544
No 102
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=6.3e-08 Score=72.48 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=42.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
||||+.||+||||||+.|+|....-.|+ +|+..|.||.|+|......
T Consensus 67 LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 67 LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred EEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 6899999999999999999999999999 7899999999999875443
No 103
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=2.5e-07 Score=80.12 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=61.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 172 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~ 172 (237)
.....+|+|-|||..+++++|+.+|+.||+|..|+.... .++.+||+|-+..+|++|++.++ ++.++.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 556789999999999999999999999999998765444 67899999999999999997655 88888887
No 104
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.39 E-value=2.5e-06 Score=70.51 Aligned_cols=84 Identities=18% Similarity=0.306 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEE--------EEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccC
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEIC 167 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~--------~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~ 167 (237)
.....+|||-+||.++++++|.++|.+++.|. .|.|-+++.|+++++-|.|.|++...|++||... ..++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999999764 3568888999999999999999999999998754 4899
Q ss_pred CeEEEEEeccCCCC
Q 026534 168 GQQVAIDSATPLDD 181 (237)
Q Consensus 168 g~~l~v~~a~~~~~ 181 (237)
+..|+|..|..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999877664
No 105
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.37 E-value=9e-07 Score=54.66 Aligned_cols=34 Identities=26% Similarity=0.592 Sum_probs=32.1
Q ss_pred ccEEEEEecCHHHHHHHH--hccceeCCcEEEEeec
Q 026534 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a 44 (237)
+++|||+|.+.++|+.|+ +++..+.|++|+|.++
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 699999999999999999 7899999999999885
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.36 E-value=2.8e-05 Score=64.67 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=88.1
Q ss_pred ccEEEEEecCHHHHHHHH----hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCC
Q 026534 11 RGIGFITFASADSVENLM----VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 86 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai----~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 86 (237)
+--|.|+|+|.+.|++++ .+...+.|+...+.+++++.-... .
T Consensus 67 ~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~-g-------------------------------- 113 (494)
T KOG1456|consen 67 KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERP-G-------------------------------- 113 (494)
T ss_pred cceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhccC-C--------------------------------
Confidence 346999999999999998 245677888877777754321110 0
Q ss_pred CCCCCCCCCCCCCCCCeEEEc--CCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC
Q 026534 87 PGSFYGRGESSQRIGKKIFVG--RLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 164 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~v~--~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 164 (237)
.....+.+.|.+. |--+.+|-+-|..+....|+|..|.|++. + --.|.|||++.+.|++|-.+++
T Consensus 114 --------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 114 --------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred --------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcc
Confidence 0012233444444 44567899999999999999999988875 3 3469999999999999976555
Q ss_pred --ccC-C-eEEEEEeccCCC
Q 026534 165 --EIC-G-QQVAIDSATPLD 180 (237)
Q Consensus 165 --~~~-g-~~l~v~~a~~~~ 180 (237)
.|. | ..|+|++|+|..
T Consensus 181 GADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred cccccccceeEEEEecCcce
Confidence 443 3 378999999854
No 107
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.33 E-value=6.1e-06 Score=64.01 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecC-CCCCCCcceEEEEEcCHHHHHHHHhcCC--cc---CCeEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKD-PKRTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQQV 171 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~-~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~---~g~~l 171 (237)
....++|||.+||.++...+|..+|..|-.-+.+.|... +...-.+.+|||.|.+..+|.+|+..++ .| .+..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 344689999999999999999999998865555544322 2222246899999999999999986554 22 47789
Q ss_pred EEEeccCCCCCCCC
Q 026534 172 AIDSATPLDDAGPS 185 (237)
Q Consensus 172 ~v~~a~~~~~~~~~ 185 (237)
+|+.|++...+..+
T Consensus 111 hiElAKSNtK~kr~ 124 (284)
T KOG1457|consen 111 HIELAKSNTKRKRR 124 (284)
T ss_pred EeeehhcCcccccC
Confidence 99998876665543
No 108
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.28 E-value=9.2e-07 Score=76.48 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=44.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
++-|+.||++|||||++|.+.++|+.|+ +++.++.|++|+|.|+.....
T Consensus 50 ~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 50 LVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred ecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 4679999999999999999999999999 789999999999999876544
No 109
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.27 E-value=2.6e-05 Score=65.55 Aligned_cols=73 Identities=14% Similarity=0.289 Sum_probs=63.2
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEecc
Q 026534 101 GKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 177 (237)
Q Consensus 101 ~~~l~v~~lp~-~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~a~ 177 (237)
...|.|.||.. .+|.+-|..+|.-||.|..|+|..++ +.-|.|+|.+...|+-|+. +++.+.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57788888854 58999999999999999999999873 4569999999999999986 5669999999999876
Q ss_pred C
Q 026534 178 P 178 (237)
Q Consensus 178 ~ 178 (237)
=
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 4
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1.4e-05 Score=69.07 Aligned_cols=66 Identities=32% Similarity=0.438 Sum_probs=60.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHh-cCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~-~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 162 (237)
.-++.+||||++||.-++.++|..+|+ -||.|+.+-|-+|.+-..++|-+=|.|.+..+-.+||..
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 367789999999999999999999998 799999999999988888999999999999999999863
No 111
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.26 E-value=5.4e-07 Score=69.51 Aligned_cols=75 Identities=15% Similarity=0.309 Sum_probs=60.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~ 174 (237)
.....+|||.||...++|+.|.++|-+-|.|..|.|..++. ++.+ ||||+|+++-+..-|++ ++..+.++.+.|.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 45578999999999999999999999999999998887744 4455 99999999988888864 4446666655554
No 112
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.26 E-value=5.2e-06 Score=68.22 Aligned_cols=80 Identities=16% Similarity=0.365 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEE--------EEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccC
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC 167 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~--------~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~ 167 (237)
......|||.|||.++|-+++.++|+++|.|. .|+|.++ ..|..+|=|.+.|...++++-|+.-+. .|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34456799999999999999999999999664 4677777 448889999999999999999986544 899
Q ss_pred CeEEEEEeccC
Q 026534 168 GQQVAIDSATP 178 (237)
Q Consensus 168 g~~l~v~~a~~ 178 (237)
|+.|+|+.|+=
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999998863
No 113
>smart00360 RRM RNA recognition motif.
Probab=98.26 E-value=1.7e-06 Score=55.07 Aligned_cols=41 Identities=24% Similarity=0.554 Sum_probs=35.2
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEe
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVD 42 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~ 42 (237)
.+++.+++++|||||+|.+.++|.+|+ +++..+.|++|.|.
T Consensus 29 ~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 29 VRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred EeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 345567899999999999999999999 56788999998873
No 114
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.25 E-value=1.3e-06 Score=56.41 Aligned_cols=38 Identities=21% Similarity=0.516 Sum_probs=32.7
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEE
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVV 40 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~ 40 (237)
++++. +.++|+|||+|.+.++|.+|+ .++++|+|++|+
T Consensus 31 ~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 31 IKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred Eeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 34556 899999999999999999999 456899999885
No 115
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.24 E-value=1.2e-06 Score=56.27 Aligned_cols=35 Identities=20% Similarity=0.515 Sum_probs=32.4
Q ss_pred CCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEE
Q 026534 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVV 40 (237)
Q Consensus 6 ~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~ 40 (237)
.++.++|||||+|.+.++|++|+ +++..+.|++|+
T Consensus 34 ~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 34 SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 57899999999999999999999 789999999885
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.23 E-value=6.5e-06 Score=68.57 Aligned_cols=124 Identities=21% Similarity=0.194 Sum_probs=84.6
Q ss_pred CCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCC
Q 026534 7 SKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 85 (237)
-|+--|+|.|.|.|.|.-+.|+ ...+.+.++.|.|-.+....-..-..... .
T Consensus 98 qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s---------------------------~ 150 (508)
T KOG1365|consen 98 QGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTS---------------------------N 150 (508)
T ss_pred hhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCcc---------------------------c
Confidence 3667789999999999999999 56888999999998877654321100000 0
Q ss_pred CCCCCCCCCCCC-CCCCCeEEEcCCCCCCCHHHHHHHHhcC----CcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHH
Q 026534 86 HPGSFYGRGESS-QRIGKKIFVGRLPQEATAEDLRRYFSRF----GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (237)
Q Consensus 86 ~~~~~~~~~~~~-~~~~~~l~v~~lp~~~~~~~l~~~F~~~----G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~ 160 (237)
...... ...--.|-+++||+++++.++.+||..- |..+.|-+++. .+|+..|-|||.|..+++|+.||
T Consensus 151 ------e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL 223 (508)
T KOG1365|consen 151 ------EAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFAL 223 (508)
T ss_pred ------cCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHH
Confidence 000000 1112345668999999999999999631 23334433333 66888899999999999999999
Q ss_pred hcCC
Q 026534 161 RRSH 164 (237)
Q Consensus 161 ~~~~ 164 (237)
.+-.
T Consensus 224 ~khr 227 (508)
T KOG1365|consen 224 RKHR 227 (508)
T ss_pred HHHH
Confidence 6543
No 117
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.19 E-value=5.6e-06 Score=73.83 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCC---CCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDP---KRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 172 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~---~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~ 172 (237)
...++.|||+||++.++++.|...|..||.|..|+|+--+ ...+.+-|+||.|-+..++++|+..++ .+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4457899999999999999999999999999999887543 234567899999999999999998666 77888888
Q ss_pred EEeccC
Q 026534 173 IDSATP 178 (237)
Q Consensus 173 v~~a~~ 178 (237)
+-|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 888854
No 118
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.18 E-value=1.4e-06 Score=71.03 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=37.3
Q ss_pred CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
.-|||||||+|.+.+||++|- +.+.+|.||+|+|..+..+-
T Consensus 133 RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 133 RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 359999999999999999999 67889999999999998763
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.18 E-value=5.9e-06 Score=73.54 Aligned_cols=162 Identities=12% Similarity=0.053 Sum_probs=99.6
Q ss_pred CCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCC
Q 026534 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP 81 (237)
Q Consensus 3 ~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (237)
+++..+-..|-++|+|....++++|+ .+...+-.|.|.|..+................. ......++.+
T Consensus 344 ~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~----------~~~~~~hg~p 413 (944)
T KOG4307|consen 344 ENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPP----------PVIQNNHGRP 413 (944)
T ss_pred hhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccCccccccCCC----------CcccccCCCC
Confidence 34454444789999999999999999 566677788888865543322211111110000 0000011111
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEE-EEeecCCCCCCCcceEEEEEcCHHHHHHH
Q 026534 82 TLYDHPGSFYGR-GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (237)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~-~~v~~~~~~~~~~g~afv~f~~~~~a~~a 159 (237)
..........+. ...+...+.+|||..||..+++.++-++|...-.|++ |.|.+. .+++.++.|||+|..++++..|
T Consensus 414 ~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a 492 (944)
T KOG4307|consen 414 IAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTA 492 (944)
T ss_pred CCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-Ccccccchhhheeccccccchh
Confidence 100000011111 2223556789999999999999999999987766765 555554 7788899999999998888777
Q ss_pred Hhc--CCccCCeEEEEEe
Q 026534 160 SRR--SHEICGQQVAIDS 175 (237)
Q Consensus 160 ~~~--~~~~~g~~l~v~~ 175 (237)
+.- .+.+..+.|+|..
T Consensus 493 ~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 493 SSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred hhcccccccCceEEEeec
Confidence 643 3355566677764
No 120
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.18 E-value=1.9e-05 Score=54.20 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=60.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc--CCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-----cc-CCeEEEE
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSR--FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-----EI-CGQQVAI 173 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~--~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-----~~-~g~~l~v 173 (237)
++|.|.|||...|.++|.+++.. .|....+.++-|..+.-+.|||||-|.+++.|..-....+ .+ ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999964 3567778889998888899999999999999888765332 22 3455677
Q ss_pred Eecc
Q 026534 174 DSAT 177 (237)
Q Consensus 174 ~~a~ 177 (237)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7765
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=1.2e-06 Score=79.37 Aligned_cols=109 Identities=16% Similarity=0.235 Sum_probs=85.9
Q ss_pred CCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCC
Q 026534 5 QGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (237)
Q Consensus 5 ~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 83 (237)
+.+++-||+|+|+|..++++.+|| .....+.|
T Consensus 703 ~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g----------------------------------------------- 735 (881)
T KOG0128|consen 703 KNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG----------------------------------------------- 735 (881)
T ss_pred hhccccccceeeEeecCCchhhhhhhhhhhhhh-----------------------------------------------
Confidence 346788999999999999999999 43333333
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC
Q 026534 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 163 (237)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 163 (237)
...|+|.|+|+..|.++|+.++..+|.+.+++++.. ..|+++|.|+|.|.+..++..++...
T Consensus 736 -----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 -----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred -----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccc
Confidence 135889999999999999999999999999887776 66889999999999999999887544
Q ss_pred C--ccCCeEEEEEeccC
Q 026534 164 H--EICGQQVAIDSATP 178 (237)
Q Consensus 164 ~--~~~g~~l~v~~a~~ 178 (237)
. .+.-..+.|..+.|
T Consensus 798 d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhhhcCccccccCC
Confidence 3 44444455555444
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.13 E-value=7.9e-07 Score=70.05 Aligned_cols=48 Identities=19% Similarity=0.411 Sum_probs=43.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
+|||+.||+||||+||.|.+..++..|| |++..++.+.|++..+.-+.
T Consensus 222 viRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 222 VIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 6899999999999999999999999999 88999999999887665443
No 123
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.11 E-value=2.6e-06 Score=63.59 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=36.7
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
...|||||||++..||+.|+ |++..|.|..|.|+.+.-+..
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 46799999999999999999 899999999999998876543
No 124
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.04 E-value=4e-06 Score=59.92 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=42.3
Q ss_pred CCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 3 ~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
-|+.||-.||||.|+|++..+|++|| +|+..|.|.+|.|.|+..+.
T Consensus 106 LDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 106 LDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred cccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 47889999999999999999999999 78999999999999987554
No 125
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.97 E-value=1.3e-05 Score=64.42 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=37.3
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~ 47 (237)
++|+. ++|||||+|.+.++|+.|| +++..|.|+.|.|.++...
T Consensus 37 ~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 37 QSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred eecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 45553 5799999999999999999 8999999999999987644
No 126
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.96 E-value=2.6e-05 Score=64.28 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=59.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC--cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEE
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 173 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G--~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v 173 (237)
.++||+||-|++|++||.+.+...| ++.+++++.++.+|.++|||+|...+..+....++-+- +|.|+.-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 4789999999999999999998877 67788999999999999999999998877776654332 666654333
No 127
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.96 E-value=1e-05 Score=57.40 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=39.9
Q ss_pred CCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCC
Q 026534 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 3 ~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~ 46 (237)
-|+.+.+..|||||+|-+.++|+.|| .++..|+.+.|+|.|-..
T Consensus 70 Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 70 LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 37889999999999999999999999 789999999999987543
No 128
>smart00362 RRM_2 RNA recognition motif.
Probab=97.92 E-value=1.9e-05 Score=50.24 Aligned_cols=35 Identities=26% Similarity=0.611 Sum_probs=31.3
Q ss_pred CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEe
Q 026534 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVD 42 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~ 42 (237)
+.++|+|||+|.+.++|++|+ +++..+.|++|.|+
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 678899999999999999999 57789999998873
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=8.3e-06 Score=67.30 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=44.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
||+|..||.|.-||||+|.+.+++++|. |++..|+.+.|.|.++++-
T Consensus 271 VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSV 319 (479)
T KOG0415|consen 271 VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSV 319 (479)
T ss_pred EEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhh
Confidence 6899999999999999999999999999 8999999999999988653
No 130
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.85 E-value=4.4e-06 Score=64.58 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=74.7
Q ss_pred CCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCC
Q 026534 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (237)
Q Consensus 3 ~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (237)
.|-..+..| ||||.|+++..+.-|+ +|+..+.++.|.|+.-....
T Consensus 42 p~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~s-------------------------------- 88 (267)
T KOG4454|consen 42 PSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNS-------------------------------- 88 (267)
T ss_pred CCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCCC--------------------------------
Confidence 333446677 9999999999999999 78999999988774332100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHH
Q 026534 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~ 160 (237)
-. -|...++++.+.+.|++-+.+..+++.++.. ++++.+.|+.+......-.++
T Consensus 89 --------------------ha-----pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~ 142 (267)
T KOG4454|consen 89 --------------------HA-----PLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFAL 142 (267)
T ss_pred --------------------cc-----hhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHh
Confidence 00 1455778999999999999999999998855 778889999887655544454
No 131
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.84 E-value=4.9e-05 Score=53.25 Aligned_cols=68 Identities=22% Similarity=0.388 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-------ccCCeEEEEE
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-------EICGQQVAID 174 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-------~~~g~~l~v~ 174 (237)
..|.|.+++..++.++|+++|+.||.|.+|.+... ...|+|.|.+.+.|+.|+.... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46889899999999999999999999999998764 2368999999999999875322 4556555555
Q ss_pred e
Q 026534 175 S 175 (237)
Q Consensus 175 ~ 175 (237)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 132
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.82 E-value=8.3e-05 Score=48.94 Aligned_cols=66 Identities=18% Similarity=0.498 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHH----HHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 102 KKIFVGRLPQEATAEDLR----RYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~----~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
..|+|.|||.+.+...|+ .++..+| .|..| ..+.|+|.|.+.+.|+.|.+++. .+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 368999999998876654 5566777 55444 23679999999999999998655 7889999999
Q ss_pred ecc
Q 026534 175 SAT 177 (237)
Q Consensus 175 ~a~ 177 (237)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 864
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.77 E-value=2.3e-06 Score=71.96 Aligned_cols=115 Identities=16% Similarity=0.275 Sum_probs=91.1
Q ss_pred ccEEEEEecCHHHHHHHH--hc-cceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCC
Q 026534 11 RGIGFITFASADSVENLM--VD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai--~~-~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (237)
-|||||...+...|.+|+ ++ ..++.|+.+.|....++..
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq-------------------------------------- 78 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ-------------------------------------- 78 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH--------------------------------------
Confidence 489999999999999999 44 5599999999988877642
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEe-ecCCCCCCCcceEEEEEcCHHHHHHHHhcC--C
Q 026534 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV-PKDPKRTGHRGFGFVTFAEEVVADRVSRRS--H 164 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v-~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~ 164 (237)
.++++-|.|+|+...|+.|..++.+||.+..|.. ..+.. .-..-|+|...+.+..||.++ +
T Consensus 79 ------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 79 ------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred ------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcch
Confidence 2456889999999999999999999999988855 33322 234456788888888888654 4
Q ss_pred ccCCeEEEEEeccCC
Q 026534 165 EICGQQVAIDSATPL 179 (237)
Q Consensus 165 ~~~g~~l~v~~a~~~ 179 (237)
.+....++|.|--..
T Consensus 143 Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDE 157 (584)
T ss_pred HhhhhhhhcccCchh
Confidence 889999999985433
No 134
>PLN03213 repressor of silencing 3; Provisional
Probab=97.70 E-value=3.7e-05 Score=66.17 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=36.4
Q ss_pred CCCCCcccEEEEEecCH--HHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 5 QGSKAHRGIGFITFASA--DSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 5 ~~tg~skG~aFV~F~~~--~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
+.|| ||||||+|.+. .++.+|| +++.+++|+.|+|+.|.+.
T Consensus 44 RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 44 RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 5577 99999999987 6789999 8999999999999998764
No 135
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.68 E-value=0.00016 Score=43.92 Aligned_cols=52 Identities=27% Similarity=0.540 Sum_probs=42.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHH
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~ 160 (237)
+.|-|.+.+.+..+..| ..|.+||+|..+.+.. ...+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 46778899988776544 5788899999988862 3468999999999999985
No 136
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.64 E-value=0.00012 Score=46.77 Aligned_cols=35 Identities=26% Similarity=0.609 Sum_probs=31.1
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEee
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDR 43 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~ 43 (237)
.++|+|||+|.+.++|..|+ +++..+.|++|.|.+
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 67999999999999999999 567789999998853
No 137
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.63 E-value=8.3e-05 Score=59.00 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=36.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~ 46 (237)
|++| +.+++||||+|+++++|+.|| +++..|.++.|.|.....
T Consensus 37 I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 37 IIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred EecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 3555 456689999999999999999 899999999999977653
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.50 E-value=0.0001 Score=67.60 Aligned_cols=117 Identities=17% Similarity=0.289 Sum_probs=87.2
Q ss_pred CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCC
Q 026534 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 85 (237)
+.---||||.|.+.+.+..|+ +.+..|..-.+++.+..++
T Consensus 410 ~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k-------------------------------------- 451 (975)
T KOG0112|consen 410 KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK-------------------------------------- 451 (975)
T ss_pred CcccchhhhhhhccccCcccchhhcCCccccCcccccccccc--------------------------------------
Confidence 344458999999999988888 4555554444444333321
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--
Q 026534 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-- 163 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~-- 163 (237)
......+|+++|..++....|..+|..||.|..|.+-. ...|++|.|++...+++|+..+
T Consensus 452 ------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rg 513 (975)
T KOG0112|consen 452 ------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRG 513 (975)
T ss_pred ------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhc
Confidence 44578999999999999999999999999998887744 3469999999999999998543
Q ss_pred CccC--CeEEEEEeccCCC
Q 026534 164 HEIC--GQQVAIDSATPLD 180 (237)
Q Consensus 164 ~~~~--g~~l~v~~a~~~~ 180 (237)
..|. .+.++|.++.+..
T Consensus 514 ap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 514 APLGGPPRRLRVDLASPPG 532 (975)
T ss_pred CcCCCCCcccccccccCCC
Confidence 3343 4568888886543
No 139
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.48 E-value=0.00022 Score=56.57 Aligned_cols=75 Identities=28% Similarity=0.407 Sum_probs=59.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC------ccCCeEEEEEe
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH------EICGQQVAIDS 175 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~------~~~g~~l~v~~ 175 (237)
..|||.||...++.+.|...|+.||.|....+..| ..++..+-++|+|...-.+.+|+.... ...+.++.|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 47999999999999999999999999987666666 456678889999999988888875331 55666666665
Q ss_pred cc
Q 026534 176 AT 177 (237)
Q Consensus 176 a~ 177 (237)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.29 E-value=0.00028 Score=56.49 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=41.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~ 45 (237)
|++|+.++.+||||||+|.+.+.++.|+ +++..|.++.|.|.+..
T Consensus 133 i~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 133 VPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred eeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 5789999999999999999999999999 79999999999997654
No 141
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.26 E-value=0.00085 Score=55.35 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=59.8
Q ss_pred CCCCeEEEcCCCCCCCHHH----H--HHHHhcCCcEEEEEeecCCCCCCC-cc--eEEEEEcCHHHHHHHHhc--CCccC
Q 026534 99 RIGKKIFVGRLPQEATAED----L--RRYFSRFGRILDVYVPKDPKRTGH-RG--FGFVTFAEEVVADRVSRR--SHEIC 167 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~----l--~~~F~~~G~i~~~~v~~~~~~~~~-~g--~afv~f~~~~~a~~a~~~--~~~~~ 167 (237)
...+-+||-+||+.+..++ | .++|.+||.|..|.|.+.-..-.+ .+ -.||.|.+.++|..||.. +..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3445689999998876665 3 589999999998877654321111 12 249999999999999964 45889
Q ss_pred CeEEEEEeccCC
Q 026534 168 GQQVAIDSATPL 179 (237)
Q Consensus 168 g~~l~v~~a~~~ 179 (237)
|+.|+..+...+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999987653
No 142
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.24 E-value=0.0014 Score=58.97 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=60.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCcEE-EEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 103 KIFVGRLPQEATAEDLRRYFSRFGRIL-DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 103 ~l~v~~lp~~~~~~~l~~~F~~~G~i~-~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
.|-+.|+|++++-+||.+||..|-.+- +|++-.+ +.|...|-|.|.|++.++|..|... ...|..+.|.+..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 678899999999999999999987544 5555554 6788999999999999999999864 4489999888764
No 143
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0032 Score=54.84 Aligned_cols=65 Identities=29% Similarity=0.555 Sum_probs=48.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCC---CCCCcc---eEEEEEcCHHHHHHHHhc
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK---RTGHRG---FGFVTFAEEVVADRVSRR 162 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~---~~~~~g---~afv~f~~~~~a~~a~~~ 162 (237)
...-+.+|||++||++++|+.|...|..||.+. |..+.... .--++| |+|+.|+++.+...-|..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 345578999999999999999999999999764 45542111 112456 999999998887766543
No 144
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.11 E-value=1.4e-05 Score=72.78 Aligned_cols=111 Identities=23% Similarity=0.171 Sum_probs=83.2
Q ss_pred EEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCCCCCC
Q 026534 13 IGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 91 (237)
Q Consensus 13 ~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 91 (237)
++++.+....+++.|. .++.-+.++.+.|..+.++........
T Consensus 616 ~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~kv------------------------------------ 659 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFKV------------------------------------ 659 (881)
T ss_pred hhhhhhccccchhhcccccccccCCccccCCCCCchhhhhccCc------------------------------------
Confidence 6778888888888887 666677777777766665543211110
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 92 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
.+.......++||+||+..+.+.+|...|..++.+..+++.....+++.+|+|||+|..++.+.+||.
T Consensus 660 --s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 660 --SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred --CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 00112345689999999999999999999999988887776555677889999999999999999874
No 145
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.02 E-value=0.0039 Score=43.07 Aligned_cols=76 Identities=18% Similarity=0.327 Sum_probs=48.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEE-eecCC------CCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEE-
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVY-VPKDP------KRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQV- 171 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~-v~~~~------~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l- 171 (237)
..-|.|-+.|+. ....|.+.|++||.|++.. +..+. .......+-.|.|.++.+|.+||. ++..|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 456888899998 4566778899999998664 11110 011135689999999999999996 5667777544
Q ss_pred EEEecc
Q 026534 172 AIDSAT 177 (237)
Q Consensus 172 ~v~~a~ 177 (237)
-|.+..
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 455553
No 146
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.02 E-value=0.0012 Score=56.21 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=54.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecC---CCCCC----------CcceEEEEEcCHHHHHHHHhcC
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKD---PKRTG----------HRGFGFVTFAEEVVADRVSRRS 163 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~---~~~~~----------~~g~afv~f~~~~~a~~a~~~~ 163 (237)
..++.+|.+-|||.+-.-+.|.++|..+|.|+.|+|..- ..+.+ .+-||+|+|+..+.|.+|.+.+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 467899999999999999999999999999999998765 22211 2468999999999999997543
No 147
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.99 E-value=0.0014 Score=44.98 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=38.3
Q ss_pred CCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 6 ~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
.|...+|-|||.|++..+|.+|+ +++..+.++.+.|-+.++..
T Consensus 52 ~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 52 NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 35667999999999999999999 88999999999999887654
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.92 E-value=0.0017 Score=44.62 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=34.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeC----CcEEEEeecC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELG----GSTVVVDRAT 45 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~----gr~i~v~~a~ 45 (237)
|+.|-.++.+.|||||.|.+.+.|.... .++.... .+...|.+|.
T Consensus 35 LPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 35 LPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred eeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 5789999999999999999999999988 4455332 3445676664
No 149
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.005 Score=54.26 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=58.6
Q ss_pred CCCCeEEEcCCCCC------CCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--cc-CCe
Q 026534 99 RIGKKIFVGRLPQE------ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI-CGQ 169 (237)
Q Consensus 99 ~~~~~l~v~~lp~~------~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~-~g~ 169 (237)
--...|+|.|+|-- .-..-|..+|+++|+|....++.+..+| .+||.|++|.+..+|+.|++.++ .| .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34568899999853 2234456889999999999999886666 99999999999999999998655 44 355
Q ss_pred EEEEEe
Q 026534 170 QVAIDS 175 (237)
Q Consensus 170 ~l~v~~ 175 (237)
.+.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666653
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.52 E-value=0.0036 Score=52.74 Aligned_cols=75 Identities=12% Similarity=0.195 Sum_probs=58.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCC---CCCcceEEEEEcCHHHHHHHH-hcCCccCCeEEEEEec
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR---TGHRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSA 176 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~---~~~~g~afv~f~~~~~a~~a~-~~~~~~~g~~l~v~~a 176 (237)
..|.|.||.++++.++++.+|...|.|..+.|...... ......|||.|.+...+..|- +....+-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 37999999999999999999999999999988764322 224568999999998887773 3344566777766654
No 151
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.40 E-value=0.02 Score=37.81 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=40.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
......||. +|..+...||.++|+.||.|. |..+.| --|||.....+.+..|+.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHH
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHH
Confidence 345667776 999999999999999999874 666665 259999999999988864
No 152
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.35 E-value=0.0039 Score=51.73 Aligned_cols=38 Identities=18% Similarity=0.462 Sum_probs=34.0
Q ss_pred CcccEEEEEecCHHHHHHHH---hccceeCCcEEEEeecCC
Q 026534 9 AHRGIGFITFASADSVENLM---VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai---~~~~~~~gr~i~v~~a~~ 46 (237)
..+++|||+|.+.++|+.|. .+...|+|++|.|.|..+
T Consensus 262 ~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 262 PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 35789999999999999999 357789999999999988
No 153
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.29 E-value=0.0026 Score=50.65 Aligned_cols=70 Identities=23% Similarity=0.455 Sum_probs=53.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCC--------CCCc----ceEEEEEcCHHHHHHHHh--cCCc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR--------TGHR----GFGFVTFAEEVVADRVSR--RSHE 165 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~--------~~~~----g~afv~f~~~~~a~~a~~--~~~~ 165 (237)
.+-.||+++||+.++...|+++|..||.|-.|.|.....+ +.+. --+.|+|.+...|..+.. +...
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999998888766444 2222 236789999988887754 4446
Q ss_pred cCCe
Q 026534 166 ICGQ 169 (237)
Q Consensus 166 ~~g~ 169 (237)
|.|+
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 6664
No 154
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.06 E-value=0.055 Score=33.81 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=43.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcC---CcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRF---GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~---G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 162 (237)
..+|+|.++. +++.++|+.+|..| .....|..+.|. -|-|.|.+.+.|..||..
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 4689999985 57778899999988 124578888872 489999999999999865
No 155
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=96.03 E-value=0.013 Score=39.46 Aligned_cols=69 Identities=22% Similarity=0.267 Sum_probs=46.1
Q ss_pred EEEEecCHHHHHHHH-hccc--eeCCcEEEEeec--CCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCCC
Q 026534 14 GFITFASADSVENLM-VDTH--ELGGSTVVVDRA--TPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (237)
Q Consensus 14 aFV~F~~~~~A~~Ai-~~~~--~~~gr~i~v~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 88 (237)
|.|+|.+..-|++.+ +..+ .+++..+.|... ....-..-+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv---------------------------------- 46 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQV---------------------------------- 46 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEE----------------------------------
Confidence 689999999999999 4444 667777666433 1111000000
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHh
Q 026534 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFS 123 (237)
Q Consensus 89 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~ 123 (237)
......++|.|.|||..+++++|++.++
T Consensus 47 -------~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 47 -------FSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred -------EEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 0134567899999999999999987553
No 156
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.92 E-value=0.059 Score=39.67 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=49.5
Q ss_pred CCCCCeEEEcCCC-----C-CCCH---HHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccC
Q 026534 98 QRIGKKIFVGRLP-----Q-EATA---EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEIC 167 (237)
Q Consensus 98 ~~~~~~l~v~~lp-----~-~~~~---~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~ 167 (237)
.++..+|.|.-+. . ...+ .+|.+.|..||.+.-++++.+ .-.|+|.+-..|.+|+. .+.++.
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~ 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVN 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEET
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEEC
Confidence 3455677776555 1 2232 256677888998887877664 46999999999999996 567999
Q ss_pred CeEEEEEeccC
Q 026534 168 GQQVAIDSATP 178 (237)
Q Consensus 168 g~~l~v~~a~~ 178 (237)
|+.|+|+...|
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999998665
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.79 E-value=0.018 Score=38.16 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=27.2
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
.+.+.|.|.|.+.+.|++|. |++..+.|++|.|.+..
T Consensus 37 v~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 37 VSGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp --TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred EeCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 35688999999999999999 88999999999998763
No 158
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.66 E-value=0.073 Score=38.87 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=53.3
Q ss_pred CCCCCeEEEcCCCCCC----CHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-ccCCeEEE
Q 026534 98 QRIGKKIFVGRLPQEA----TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVA 172 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~----~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~g~~l~ 172 (237)
..+..+|.|.=|..++ +...+...++.||.|.+|.+.- +.-|.|.|.+..+|..|+...+ ..-|.-+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 4456788887555543 3344445567899999887643 3569999999999999998766 66677788
Q ss_pred EEecc
Q 026534 173 IDSAT 177 (237)
Q Consensus 173 v~~a~ 177 (237)
+.|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 88754
No 159
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.54 E-value=0.047 Score=44.53 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCCCCCC-cceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 115 AEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 115 ~~~l~~~F~~~G~i~~~~v~~~~~~~~~-~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
++++++.+++||+|..|.|..+...... .---||+|+..++|.+|+..++ .|.|+.+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 4667888899999999888776322222 2336999999999999986544 88898887654
No 160
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.43 E-value=0.007 Score=48.28 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=45.6
Q ss_pred HHHHHHHh-cCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 026534 116 EDLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (237)
Q Consensus 116 ~~l~~~F~-~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~ 177 (237)
++|...|+ +||+|+.+.|..+ ..-.-.|=++|.|...++|++|+..++ .+.|++|.+.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 8999988866554 222346779999999999999997655 9999999988753
No 161
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=95.40 E-value=0.033 Score=49.41 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=38.2
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHHhc--cceeCCcEEEEeecCCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai~~--~~~~~gr~i~v~~a~~~~ 48 (237)
|.+..|---+.|+||++.+.++|.++|.+ .++|+|+-|.|+.+.-..
T Consensus 438 VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp 486 (940)
T KOG4661|consen 438 VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEP 486 (940)
T ss_pred eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCc
Confidence 44555566788999999999999999954 559999999999876543
No 162
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.97 E-value=0.022 Score=48.63 Aligned_cols=73 Identities=19% Similarity=0.399 Sum_probs=57.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC--CcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC---ccCCeEEEEEec
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EICGQQVAIDSA 176 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~--G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---~~~g~~l~v~~a 176 (237)
++||++||.+.++..+|..+|... +.-..+ ++ ..+|+||...+..-|..|++.+. ++.|.++.|...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-ee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 479999999999999999999643 111111 22 34799999999999999987544 899999999999
Q ss_pred cCCCCC
Q 026534 177 TPLDDA 182 (237)
Q Consensus 177 ~~~~~~ 182 (237)
.++..+
T Consensus 74 v~kkqr 79 (584)
T KOG2193|consen 74 VPKKQR 79 (584)
T ss_pred hhHHHH
Confidence 887654
No 163
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.85 E-value=0.058 Score=47.74 Aligned_cols=75 Identities=9% Similarity=0.226 Sum_probs=57.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhc--CCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh----cCCccC
Q 026534 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSR--FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR----RSHEIC 167 (237)
Q Consensus 94 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~--~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~----~~~~~~ 167 (237)
...+...-+.|.|+-||..+-.++++.+|.. +-.+.+|.+..+. . =||+|++..+|+.|.+ ...+|-
T Consensus 168 kVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----n--WyITfesd~DAQqAykylreevk~fq 240 (684)
T KOG2591|consen 168 KVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----N--WYITFESDTDAQQAYKYLREEVKTFQ 240 (684)
T ss_pred ccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----c--eEEEeecchhHHHHHHHHHHHHHhhc
Confidence 3344555667788999999999999999964 6678888886651 1 3999999999999953 344888
Q ss_pred CeEEEEEe
Q 026534 168 GQQVAIDS 175 (237)
Q Consensus 168 g~~l~v~~ 175 (237)
|++|..++
T Consensus 241 gKpImARI 248 (684)
T KOG2591|consen 241 GKPIMARI 248 (684)
T ss_pred Ccchhhhh
Confidence 88876553
No 164
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.75 E-value=0.039 Score=49.13 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=56.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-----ccCCeE
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-----EICGQQ 170 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-----~~~g~~ 170 (237)
....++.|||.||-.-.|.-+|+.++..-| .|+.. ++-. -+..|||.|.+.++|.+.+..+| .-..+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 466789999999999999999999998544 44443 2221 35689999999999988776665 334667
Q ss_pred EEEEeccC
Q 026534 171 VAIDSATP 178 (237)
Q Consensus 171 l~v~~a~~ 178 (237)
|.+.|+..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 77777643
No 165
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=94.69 E-value=0.04 Score=50.54 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=36.7
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
.++|||||.+....+|++|+ ++.+.+.++.|+|.|+..+.
T Consensus 455 ~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 455 PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 57999999999999999999 78899999999999998654
No 166
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.48 E-value=0.98 Score=41.90 Aligned_cols=68 Identities=6% Similarity=0.046 Sum_probs=43.7
Q ss_pred CeEEEc-CCCCCCCHHHHHHHHhcCCcE-----EEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEE
Q 026534 102 KKIFVG-RLPQEATAEDLRRYFSRFGRI-----LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAI 173 (237)
Q Consensus 102 ~~l~v~-~lp~~~~~~~l~~~F~~~G~i-----~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v 173 (237)
.+++|. +=-..++..+|-.++..-+.| -.|.|.. .|.||+..... +...+..+ ..+.|+.|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~~~-~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPKGM-PGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcChhh-HHHHHHHhccccccCCceEE
Confidence 446663 334578888888888655533 3556644 47899876433 44444433 3789999999
Q ss_pred EeccC
Q 026534 174 DSATP 178 (237)
Q Consensus 174 ~~a~~ 178 (237)
+.+..
T Consensus 558 ~~~~~ 562 (629)
T PRK11634 558 QLLGD 562 (629)
T ss_pred EECCC
Confidence 98753
No 167
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.94 E-value=0.04 Score=46.11 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=41.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
|-+|++|+++||=|.|+|.|...|+.|| .+...+.+..|+|-.+..+.
T Consensus 106 ~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 106 IYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred ccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 3478999999999999999999999999 57889999999997776554
No 168
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.78 E-value=0.033 Score=47.13 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=44.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 162 (237)
.+|+|.+|+..+...++.+.|..+|.+....+... ...-+|-|+|........|+..
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~ 208 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRS 208 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHh
Confidence 57999999999999999999999999876666332 2345677888877777777653
No 169
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.04 E-value=0.068 Score=46.39 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=54.9
Q ss_pred CeEEEcCCCCCC-CHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHH-HhcCCccCCeEEEEEeccC
Q 026534 102 KKIFVGRLPQEA-TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SRRSHEICGQQVAIDSATP 178 (237)
Q Consensus 102 ~~l~v~~lp~~~-~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a-~~~~~~~~g~~l~v~~a~~ 178 (237)
+.|-+.-.|+.+ +-++|...|.+||.|..|.|-.. -..|.|+|.+..+|-.| ......|.++.|+|.|..+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 445555555554 66889999999999999988553 34689999999998555 4456689999999999877
No 170
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=92.26 E-value=0.16 Score=44.31 Aligned_cols=40 Identities=28% Similarity=0.551 Sum_probs=33.8
Q ss_pred CCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCC
Q 026534 8 KAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~ 47 (237)
+++..||||+|.+.++++.|| .+...|++++|.|+.-.+.
T Consensus 327 ~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 327 GKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred CCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 444599999999999999999 5688999999999776554
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.10 E-value=0.17 Score=45.04 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=30.7
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCC-cEEEEe
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGG-STVVVD 42 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~g-r~i~v~ 42 (237)
+.|..+| ++||.|++|++..+|+.|+ ++++.|+- +.+.|.
T Consensus 97 P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 97 PIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred ccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 4466655 9999999999999999999 67776644 445553
No 172
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.72 E-value=0.085 Score=43.90 Aligned_cols=80 Identities=24% Similarity=0.362 Sum_probs=54.8
Q ss_pred CCCeEEEcCCCCCCCHHHH---HHHHhcCCcEEEEEeecCCC--CCC-CcceEEEEEcCHHHHHHHHhcCC--ccCCeEE
Q 026534 100 IGKKIFVGRLPQEATAEDL---RRYFSRFGRILDVYVPKDPK--RTG-HRGFGFVTFAEEVVADRVSRRSH--EICGQQV 171 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l---~~~F~~~G~i~~~~v~~~~~--~~~-~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l 171 (237)
..+-+||-+|+..+..+.+ .+.|.+||.|..|.+..+.. ... ..--++|+|+..++|..||..-+ .+.++.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3456788899887655544 36788999999888877652 111 12237999999999999986544 5566666
Q ss_pred EEEeccCC
Q 026534 172 AIDSATPL 179 (237)
Q Consensus 172 ~v~~a~~~ 179 (237)
++.+..++
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 66655544
No 173
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=91.59 E-value=0.3 Score=39.37 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=37.7
Q ss_pred CCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
+|+|.|.|=|.|...+||.+|| .++..++|+.+++....+...
T Consensus 120 ~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 120 AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQ 164 (243)
T ss_pred CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCccc
Confidence 5899999999999999999999 678999999999987765433
No 174
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.75 E-value=0.33 Score=37.27 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=36.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc-CCcE---EEEEeecCC-CCCC-CcceEEEEEcCHHHHHHHHhc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSR-FGRI---LDVYVPKDP-KRTG-HRGFGFVTFAEEVVADRVSRR 162 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~-~G~i---~~~~v~~~~-~~~~-~~g~afv~f~~~~~a~~a~~~ 162 (237)
...+|.|++||+++|++++.+.+.. ++.. ..+.-.... .... .-.-|||.|.+.+++..-+..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~ 74 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDR 74 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHh
Confidence 4569999999999999988886665 5544 333311221 1111 234589999999986665543
No 175
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=90.41 E-value=0.68 Score=29.45 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=45.9
Q ss_pred HHHHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCCccCCeEEEEEecc
Q 026534 116 EDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSAT 177 (237)
Q Consensus 116 ~~l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~g~~l~v~~a~ 177 (237)
.+|++.|...| ++..+.-+..+.+..+...-+|+.....+-.. +.+...|+++.|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCc
Confidence 46888898888 77788888877777777888888876543333 556678999999888754
No 176
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=90.12 E-value=0.93 Score=28.92 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=46.1
Q ss_pred HHHHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCCccCCeEEEEEeccCC
Q 026534 116 EDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 179 (237)
Q Consensus 116 ~~l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~g~~l~v~~a~~~ 179 (237)
++|.+.|...| .|..+.-+..+.+..+...-||+++...+ .+-+.+...|++..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~-~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN-NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc-ccceeehHhhCCeEEEEecCCCC
Confidence 46788888888 67778777776667777888998876655 33355666889999888876543
No 177
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=89.68 E-value=0.73 Score=43.75 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=10.7
Q ss_pred CCCcccEEEEEecCHHH
Q 026534 7 SKAHRGIGFITFASADS 23 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~ 23 (237)
+|+.++|+-=.|++.-.
T Consensus 898 ~g~q~~~~g~kfsdhva 914 (1282)
T KOG0921|consen 898 SGTQRKFAGNKFSDHVA 914 (1282)
T ss_pred ccchhhccccccccchh
Confidence 56666777666766443
No 178
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=89.65 E-value=0.085 Score=49.26 Aligned_cols=63 Identities=17% Similarity=0.349 Sum_probs=50.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
...+.+||++||+..+++.+|+..|..+|.|..|.|-+-.. +.--.|+||.|.+...+-.|..
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~ 431 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKF 431 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccch
Confidence 44567999999999999999999999999999888865422 2234689999998877776653
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=89.53 E-value=0.58 Score=34.53 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=28.9
Q ss_pred EEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCC
Q 026534 13 IGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 13 ~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~ 47 (237)
--+|+|.+...|.+|+ +++..+.|+.|.|....|.
T Consensus 72 ~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 72 TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 4689999999999999 8999999999999876654
No 180
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.96 E-value=1.6 Score=33.74 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=41.5
Q ss_pred CHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC----ccCCeEEEEEeccCCC
Q 026534 114 TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAIDSATPLD 180 (237)
Q Consensus 114 ~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~----~~~g~~l~v~~a~~~~ 180 (237)
..+.|+++|..++.+..+.+++. -+-..|.|.+.++|..|...++ .+.|..++|-++.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999998877766663 3458999999999999976544 7889999999885443
No 181
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.33 E-value=0.41 Score=43.40 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=54.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~ 175 (237)
..+..++||+|+...+..+-++.+...+|.|..+.... |+|++|..+.....|+..+ ..+.+..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45567999999999999999999999999886664433 8999999999888886543 366666665544
No 182
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.23 E-value=2.1 Score=35.41 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=44.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-CCccCCe
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQ 169 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~g~ 169 (237)
..=|.|-++|+.... -|..+|++||.|++.... ..-.+-+|.|.++.+|++||.+ ...|.+.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccc
Confidence 345556688877654 466789999999765433 1345889999999999999965 4455554
No 183
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=88.18 E-value=0.31 Score=39.16 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=35.6
Q ss_pred CCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 3 ~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
.|...-.-+|-++|.|...++|++|+ +|+.++.|++|......
T Consensus 102 c~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 102 CDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred hcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 33333456788999999999999999 78999999999887764
No 184
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=87.72 E-value=0.78 Score=40.82 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=33.2
Q ss_pred CCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEE
Q 026534 4 DQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVV 40 (237)
Q Consensus 4 d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~ 40 (237)
++.|-..+|..||+|-|..+|+.|+ ++..+|.|+.|+
T Consensus 105 ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 105 IRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred hhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4567889999999999999999999 778899999988
No 185
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=86.46 E-value=1.6 Score=36.77 Aligned_cols=7 Identities=57% Similarity=0.933 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 026534 220 YGMGSGR 226 (237)
Q Consensus 220 ~g~~~~~ 226 (237)
.|++++|
T Consensus 451 rgggggr 457 (465)
T KOG3973|consen 451 RGGGGGR 457 (465)
T ss_pred CCCCCCC
Confidence 3333333
No 186
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=85.24 E-value=0.68 Score=34.29 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=58.6
Q ss_pred CcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCC
Q 026534 9 AHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (237)
...++..+.|.+.++++.++ .....+++..|.++...+.......
T Consensus 53 l~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~---------------------------------- 98 (153)
T PF14111_consen 53 LGDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEV---------------------------------- 98 (153)
T ss_pred eCCCeEEEEEEeccceeEEEecccccccccchhhhhhccccccccc----------------------------------
Confidence 35688999999999999999 4566778888888766654321110
Q ss_pred CCCCCCCCCCCCCCCeEE--EcCCCCC-CCHHHHHHHHhcCCcEEEEEeecC
Q 026534 88 GSFYGRGESSQRIGKKIF--VGRLPQE-ATAEDLRRYFSRFGRILDVYVPKD 136 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~--v~~lp~~-~~~~~l~~~F~~~G~i~~~~v~~~ 136 (237)
......+| |.+||.. .+++-|+.+.+.+|.+..+.....
T Consensus 99 ----------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 99 ----------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ----------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 11123344 4599987 577888888899999987766443
No 187
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.20 E-value=5.3 Score=25.72 Aligned_cols=65 Identities=25% Similarity=0.398 Sum_probs=34.1
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhcCC-----cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEE
Q 026534 103 KIFVG-RLPQEATAEDLRRYFSRFG-----RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 174 (237)
Q Consensus 103 ~l~v~-~lp~~~~~~~l~~~F~~~G-----~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~ 174 (237)
+|||. +--..++..+|..++...+ .|-.|.|..+ |+||+.... .+..++.. ...+.|+.|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45552 2335678889988886654 4567777554 889988754 44555543 348899999998
Q ss_pred ec
Q 026534 175 SA 176 (237)
Q Consensus 175 ~a 176 (237)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 188
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=83.70 E-value=0.58 Score=38.85 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=53.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
...++|++++.+.+.+.++..++..+|....+.+........+++++.+.|...+.+..||.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~ 148 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE 148 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH
Confidence 46789999999999999999999999977767666655677789999999999999999874
No 189
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=77.74 E-value=3.4 Score=28.53 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=27.9
Q ss_pred cccEEEEEecCHHHHHHHH-hccceeCCcEE-EEeec
Q 026534 10 HRGIGFITFASADSVENLM-VDTHELGGSTV-VVDRA 44 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i-~v~~a 44 (237)
....-.|+|.++.+|.+|| .|+..|.|.-+ -|.+.
T Consensus 53 ~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 53 GGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp CTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-
T ss_pred CCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEc
Confidence 4557889999999999999 78999988664 45554
No 190
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.96 E-value=3.1 Score=26.85 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=16.8
Q ss_pred cEEEEEecCHHHHHHHH--hccceeCCcEEEEeec
Q 026534 12 GIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (237)
Q Consensus 12 G~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a 44 (237)
-|+||+-... .|+.++ +++..+.|++|.|+.|
T Consensus 41 ~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 41 NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4889988766 566666 6788999999999764
No 191
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=75.41 E-value=6.9 Score=36.30 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=34.8
Q ss_pred CCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
..+-+-||||.|-+..||++|+ +++..+...++++.|..
T Consensus 215 k~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 215 KRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred hccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 4566779999999999999999 88999999999999883
No 192
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=74.77 E-value=4.1 Score=34.43 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=31.5
Q ss_pred CCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEE
Q 026534 4 DQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVV 41 (237)
Q Consensus 4 d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v 41 (237)
++..|.|||||.|...+...+.+.| +-..+|+|+.-.|
T Consensus 117 NR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 117 NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 5678999999999999998888888 4567899977555
No 193
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=74.26 E-value=2.2 Score=40.17 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=57.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC----ccCCeEEEEEeccC
Q 026534 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAIDSATP 178 (237)
Q Consensus 103 ~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~----~~~g~~l~v~~a~~ 178 (237)
+.++.|.+-..+..-|..+|.+||.+.+....++ -..|.|+|.+.+.|..|+..++ ..-|-+.+|.+|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4455555667888899999999999998877665 3479999999999998886555 33466788888876
Q ss_pred CCCCCC
Q 026534 179 LDDAGP 184 (237)
Q Consensus 179 ~~~~~~ 184 (237)
-+--.+
T Consensus 374 ~~~~ep 379 (1007)
T KOG4574|consen 374 LPMYEP 379 (1007)
T ss_pred cccccC
Confidence 554433
No 194
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=71.33 E-value=6.4 Score=24.93 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=21.7
Q ss_pred EEEEecCHHHHHHHH--hccceeCCcEEEE
Q 026534 14 GFITFASADSVENLM--VDTHELGGSTVVV 41 (237)
Q Consensus 14 aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v 41 (237)
=||.|.+..+|+++. +++..+..-.|.+
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 389999999999999 5666666655544
No 195
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=68.41 E-value=28 Score=28.75 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=35.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcE-EEEEeecCCCCCCCcceEEEEEcCH
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVPKDPKRTGHRGFGFVTFAEE 153 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i-~~~~v~~~~~~~~~~g~afv~f~~~ 153 (237)
..-|+|+|||.++.-.||+..+.+.+-+ .++.. .-..+-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 3459999999999999999999887632 23322 22567899999765
No 196
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=67.13 E-value=8 Score=26.90 Aligned_cols=32 Identities=13% Similarity=0.402 Sum_probs=18.9
Q ss_pred EEEEEecCHHHHHHHHh----c---cceeCCcEEEEeec
Q 026534 13 IGFITFASADSVENLMV----D---THELGGSTVVVDRA 44 (237)
Q Consensus 13 ~aFV~F~~~~~A~~Ai~----~---~~~~~gr~i~v~~a 44 (237)
-|||.|.+.++|+.|+. . ...|.+..+.+...
T Consensus 39 ~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 39 EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 69999999999999992 2 44666766666443
No 197
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=65.96 E-value=7.5 Score=32.78 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=28.3
Q ss_pred EEEecCHHHHHHHH--hccceeCCcEEEEeecCC
Q 026534 15 FITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 15 FV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~ 46 (237)
||+|...+||..|| -++..++||.|+..+-..
T Consensus 169 YITy~~kedAarcIa~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred EEEecchHHHHHHHHHhccccccCceEeeecCch
Confidence 99999999999999 578999999999877544
No 198
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=65.66 E-value=44 Score=23.46 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
...+.+...|+.++.++|..+.+.+- .|..++|++|... ++-.+.+.|.+.++|..-..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~ 72 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYE 72 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHH
Confidence 33444455566666677766656554 5678899887432 56678999999999888754
No 199
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=64.91 E-value=19 Score=22.39 Aligned_cols=19 Identities=37% Similarity=0.850 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCcEEEEEee
Q 026534 116 EDLRRYFSRFGRILDVYVP 134 (237)
Q Consensus 116 ~~l~~~F~~~G~i~~~~v~ 134 (237)
.+|+++|+..|+|.-+.|.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6799999999998755543
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.83 E-value=42 Score=29.66 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=49.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 162 (237)
+..|+|=.+|..++-.||-.|...+- .|..++|++|... ++=...|.|.+.++|..-...
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHH
Confidence 78899999999999999999998765 6789999996332 455689999999999887653
No 201
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=63.26 E-value=8.3 Score=32.43 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=23.6
Q ss_pred EEEEecCHHHHHHHHhccceeCCcEEEEeecC
Q 026534 14 GFITFASADSVENLMVDTHELGGSTVVVDRAT 45 (237)
Q Consensus 14 aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~a~ 45 (237)
|||+|++..+|+.|+..-.....+.+.++.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCC
Confidence 79999999999999954344445666676653
No 202
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=61.54 E-value=22 Score=29.53 Aligned_cols=79 Identities=10% Similarity=0.202 Sum_probs=57.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCC-------CCCCcceEEEEEcCHHHHHHH----HhcCC---
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK-------RTGHRGFGFVTFAEEVVADRV----SRRSH--- 164 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~-------~~~~~g~afv~f~~~~~a~~a----~~~~~--- 164 (237)
-.++.|.+.|+..+++-..+-..|-+||.|++|.++.+.. ..+......+.|-+.+.|..- ++++.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 3456788899999998888888899999999999988751 122345678899998887764 33332
Q ss_pred -ccCCeEEEEEecc
Q 026534 165 -EICGQQVAIDSAT 177 (237)
Q Consensus 165 -~~~g~~l~v~~a~ 177 (237)
.|....|.|.+..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 5666777776643
No 203
>COG4371 Predicted membrane protein [Function unknown]
Probab=59.98 E-value=15 Score=29.71 Aligned_cols=8 Identities=25% Similarity=0.439 Sum_probs=3.4
Q ss_pred CCCCCCCH
Q 026534 108 RLPQEATA 115 (237)
Q Consensus 108 ~lp~~~~~ 115 (237)
.+|..+++
T Consensus 9 ~~Pk~~~~ 16 (334)
T COG4371 9 SSPKRARS 16 (334)
T ss_pred cCcHHHHH
Confidence 34444443
No 204
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=58.91 E-value=11 Score=31.69 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=26.3
Q ss_pred EEEEEcCHHHHHHHHhcCCccCCeEEEEEeccCCC
Q 026534 146 GFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLD 180 (237)
Q Consensus 146 afv~f~~~~~a~~a~~~~~~~~g~~l~v~~a~~~~ 180 (237)
|||.|++..+|+.|++.........+.+..|-.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcc
Confidence 79999999999999876555555666777665443
No 205
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.75 E-value=34 Score=29.70 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=46.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCc-EEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 164 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~-i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 164 (237)
.+-.+.|-|-++|...-.+||...|..|+. --.|.++-| -.+|..|.+...|..||...|
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhccC
Confidence 344577888899999999999999999873 235666655 379999999999999985444
No 206
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=57.29 E-value=23 Score=29.16 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=27.6
Q ss_pred CCCeEEEcCCCC------------CCCHHHHHHHHhcCCcEEEEEeec
Q 026534 100 IGKKIFVGRLPQ------------EATAEDLRRYFSRFGRILDVYVPK 135 (237)
Q Consensus 100 ~~~~l~v~~lp~------------~~~~~~l~~~F~~~G~i~~~~v~~ 135 (237)
...+||+.+||- ..+++-|...|+.||.|..|.|+-
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 345788877763 256788999999999998887753
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=54.68 E-value=52 Score=20.76 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEE
Q 026534 112 EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVA 172 (237)
Q Consensus 112 ~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~ 172 (237)
.++-++|+..+..|.- . +|..| .+ | =||.|.+..+|+.+... ...+....|.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d-~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDD-RT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEec-CC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 4677899999999973 3 33344 22 2 49999999999999754 3355454443
No 208
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=53.00 E-value=57 Score=21.72 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=40.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 103 KIFVGRLPQEATAEDLRRYFSR-FG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 103 ~l~v~~lp~~~~~~~l~~~F~~-~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
.-|+.-++..++..+|+..++. |+ .|..|....-.. ...-|||.+..-.+|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 4566678999999999999986 66 566666554421 34569999988777766543
No 209
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.86 E-value=61 Score=21.14 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHH
Q 026534 103 KIFVGRLPQEATAEDLRRYFSR-FG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (237)
Q Consensus 103 ~l~v~~lp~~~~~~~l~~~F~~-~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~ 160 (237)
.-|+..++...+..+|+..++. |+ .|..|....-+. ...-|||.+..-..|....
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 4667788999999999999986 66 566665544321 3456999998776666543
No 210
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.00 E-value=18 Score=25.65 Aligned_cols=47 Identities=26% Similarity=0.433 Sum_probs=24.3
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcC
Q 026534 103 KIFVGRLPQE---------ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 152 (237)
Q Consensus 103 ~l~v~~lp~~---------~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~ 152 (237)
++.|-|++.. .+.+.|.+.|..|..++ ++.+.+.. ...++++|+|..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~ 65 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNK 65 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--S
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECC
Confidence 4556677543 35678999999998765 44444422 267899999985
No 211
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=49.02 E-value=39 Score=28.81 Aligned_cols=8 Identities=13% Similarity=0.223 Sum_probs=3.3
Q ss_pred CHHHHHHH
Q 026534 114 TAEDLRRY 121 (237)
Q Consensus 114 ~~~~l~~~ 121 (237)
++++|+.+
T Consensus 199 ~w~~iE~~ 206 (465)
T KOG3973|consen 199 TWPEIEKQ 206 (465)
T ss_pred hHHHHHHH
Confidence 44444433
No 212
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.18 E-value=97 Score=28.43 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=54.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcC----CcEEEEEeecCC----------CCCC---------------------
Q 026534 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRF----GRILDVYVPKDP----------KRTG--------------------- 141 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~-~~~~~l~~~F~~~----G~i~~~~v~~~~----------~~~~--------------------- 141 (237)
...+++|-|-||.|. +...+|.-+|..| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 567889999999996 7889999999876 588888876542 1111
Q ss_pred ----------------CcceEEEEEcCHHHHHHHHhcCC--ccC--CeEEEEEe
Q 026534 142 ----------------HRGFGFVTFAEEVVADRVSRRSH--EIC--GQQVAIDS 175 (237)
Q Consensus 142 ----------------~~g~afv~f~~~~~a~~a~~~~~--~~~--g~~l~v~~ 175 (237)
.--||.|+|.+.+.|.++...+. +|. +..|.+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 11379999999999998865433 443 33444444
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=45.21 E-value=39 Score=22.70 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=21.1
Q ss_pred EEEEEcCHHHHHHHHhcCC---ccCCeEEEEE
Q 026534 146 GFVTFAEEVVADRVSRRSH---EICGQQVAID 174 (237)
Q Consensus 146 afv~f~~~~~a~~a~~~~~---~~~g~~l~v~ 174 (237)
|.|+|.+...|+..+.... .+.+..+.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE
Confidence 6899999999999986543 5555555444
No 214
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=42.71 E-value=32 Score=28.71 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=35.6
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcE-EEEeecCCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGST-VVVDRATPKE 48 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~-i~v~~a~~~~ 48 (237)
|.+..+...-.+=+|.|.+..+|++|| .++..|+|.. |-|.....+.
T Consensus 223 Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 223 VVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred eeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHH
Confidence 455666766668999999999999999 7888888865 5666555443
No 215
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=41.47 E-value=28 Score=26.78 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=47.7
Q ss_pred CeEEEcCCCCCCC-----HHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCe-EEEE
Q 026534 102 KKIFVGRLPQEAT-----AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ-QVAI 173 (237)
Q Consensus 102 ~~l~v~~lp~~~~-----~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~-~l~v 173 (237)
..+.+-+++..+. ......+|.+|-+.....+++ +.+..-|-|.+++.|..|...++ .|.++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4455666665432 233345666666555555554 34567889999999999977665 77777 7777
Q ss_pred EeccCCCC
Q 026534 174 DSATPLDD 181 (237)
Q Consensus 174 ~~a~~~~~ 181 (237)
-++.+...
T Consensus 85 yfaQ~~~~ 92 (193)
T KOG4019|consen 85 YFAQPGHP 92 (193)
T ss_pred EEccCCCc
Confidence 77766543
No 216
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=40.86 E-value=91 Score=21.67 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHH
Q 026534 115 AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (237)
Q Consensus 115 ~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~ 160 (237)
+.+|..++...| |....|..+..+ +.-|+++++.+.+..-++|
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 456778888888 666667666444 4679999999766655555
No 217
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=36.43 E-value=2.1e+02 Score=25.39 Aligned_cols=9 Identities=11% Similarity=0.124 Sum_probs=4.0
Q ss_pred cceEEEEEc
Q 026534 143 RGFGFVTFA 151 (237)
Q Consensus 143 ~g~afv~f~ 151 (237)
.|.|++.+.
T Consensus 342 ~G~ai~l~~ 350 (456)
T PRK10590 342 TGEALSLVC 350 (456)
T ss_pred CeeEEEEec
Confidence 345544443
No 218
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.83 E-value=34 Score=27.48 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=27.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL 129 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~ 129 (237)
.....+||+-|+|...|++.|.++..+.|-+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 45677999999999999999999999988443
No 219
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=35.47 E-value=27 Score=21.19 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=17.7
Q ss_pred CcccEEEEEecCHHHHHHHH--h-ccceeCCcEEEEeecC
Q 026534 9 AHRGIGFITFASADSVENLM--V-DTHELGGSTVVVDRAT 45 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~-~~~~~~gr~i~v~~a~ 45 (237)
.++|||||.-.+ ..-+-.| . -..-++|-++.|....
T Consensus 6 ~~~GfGFv~~~~-~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDD-GGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT--TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred EcCCCEEEEECC-CCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 578999999887 1111111 1 1234677777776554
No 220
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=34.77 E-value=22 Score=31.45 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=30.7
Q ss_pred cEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCC
Q 026534 12 GIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 12 G~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~ 47 (237)
--|.|+|.+..+|-.|. -.+..|++|.|+|.|..+-
T Consensus 410 ~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 410 LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 45899999999996666 5688999999999999874
No 221
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=33.41 E-value=53 Score=25.39 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=24.6
Q ss_pred EEEEEecCHHHHHHHH--hc--cceeCCcEEEEeecCCC
Q 026534 13 IGFITFASADSVENLM--VD--THELGGSTVVVDRATPK 47 (237)
Q Consensus 13 ~aFV~F~~~~~A~~Ai--~~--~~~~~gr~i~v~~a~~~ 47 (237)
=..|.|.+.++|.+|. +. +..+.|..++|.++...
T Consensus 33 Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 33 RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3679999999999999 45 67899999999888543
No 222
>COG4907 Predicted membrane protein [Function unknown]
Probab=32.98 E-value=42 Score=29.84 Aligned_cols=6 Identities=17% Similarity=0.794 Sum_probs=2.5
Q ss_pred EEEEcC
Q 026534 147 FVTFAE 152 (237)
Q Consensus 147 fv~f~~ 152 (237)
++.|.+
T Consensus 515 ylVYat 520 (595)
T COG4907 515 YLVYAT 520 (595)
T ss_pred hhhhhh
Confidence 444443
No 223
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=31.84 E-value=40 Score=18.51 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHhcCC
Q 026534 111 QEATAEDLRRYFSRFG 126 (237)
Q Consensus 111 ~~~~~~~l~~~F~~~G 126 (237)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998754
No 224
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=30.21 E-value=28 Score=31.58 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=22.1
Q ss_pred EEEecCHHHHHHHH----hccceeCCcEEEE
Q 026534 15 FITFASADSVENLM----VDTHELGGSTVVV 41 (237)
Q Consensus 15 FV~F~~~~~A~~Ai----~~~~~~~gr~i~v 41 (237)
||+|.+..||+.|. +...+|-|+.|..
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 89999999999998 3455888888643
No 225
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=30.16 E-value=30 Score=22.34 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=8.2
Q ss_pred CcccEEEEEec
Q 026534 9 AHRGIGFITFA 19 (237)
Q Consensus 9 ~skG~aFV~F~ 19 (237)
..|||+||+=.
T Consensus 11 ~~KGfGFI~~~ 21 (74)
T PRK09937 11 NAKGFGFICPE 21 (74)
T ss_pred CCCCeEEEeeC
Confidence 56999999543
No 226
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=29.66 E-value=48 Score=27.61 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=14.1
Q ss_pred EEEEecCHHHHHHHH
Q 026534 14 GFITFASADSVENLM 28 (237)
Q Consensus 14 aFV~F~~~~~A~~Ai 28 (237)
-||+|...++|-+|+
T Consensus 332 iFveF~r~e~aiKA~ 346 (378)
T KOG1996|consen 332 IFVEFERVESAIKAV 346 (378)
T ss_pred eeeeeccHHHHHHHH
Confidence 499999999999999
No 227
>PRK11901 hypothetical protein; Reviewed
Probab=28.78 E-value=1.1e+02 Score=25.94 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=37.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEE--EEcCHHHHHHHHhcCC
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFV--TFAEEVVADRVSRRSH 164 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv--~f~~~~~a~~a~~~~~ 164 (237)
..+|-|.. ..+++.|+.|..+.+ +..+.|..-..+|+ .+|..| .|.+.++|..|+..+-
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCC
Confidence 34444433 456888888887775 44455554434443 345544 7899999999987654
No 228
>PRK14998 cold shock-like protein CspD; Provisional
Probab=28.31 E-value=33 Score=22.09 Aligned_cols=12 Identities=33% Similarity=0.637 Sum_probs=8.7
Q ss_pred CcccEEEEEecC
Q 026534 9 AHRGIGFITFAS 20 (237)
Q Consensus 9 ~skG~aFV~F~~ 20 (237)
..|||+||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T PRK14998 11 NAKGFGFICPEG 22 (73)
T ss_pred CCCceEEEecCC
Confidence 568999995443
No 229
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.55 E-value=1.4e+02 Score=19.60 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=24.0
Q ss_pred cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCCccC
Q 026534 127 RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEIC 167 (237)
Q Consensus 127 ~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 167 (237)
.|.++....+ -+||-|||=.+..+...|+.....+.
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhccccee
Confidence 3555555443 68999999999999999987655443
No 230
>PRK15464 cold shock-like protein CspH; Provisional
Probab=27.02 E-value=33 Score=21.91 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=8.8
Q ss_pred CcccEEEEEecC
Q 026534 9 AHRGIGFITFAS 20 (237)
Q Consensus 9 ~skG~aFV~F~~ 20 (237)
..|||+||+=.+
T Consensus 14 ~~KGfGFI~~~~ 25 (70)
T PRK15464 14 RKSGKGFIIPSD 25 (70)
T ss_pred CCCCeEEEccCC
Confidence 468999996544
No 231
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=26.25 E-value=39 Score=21.28 Aligned_cols=12 Identities=33% Similarity=0.637 Sum_probs=9.2
Q ss_pred CcccEEEEEecC
Q 026534 9 AHRGIGFITFAS 20 (237)
Q Consensus 9 ~skG~aFV~F~~ 20 (237)
..|||+||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (68)
T TIGR02381 11 NAKGFGFICPEG 22 (68)
T ss_pred CCCCeEEEecCC
Confidence 568999996554
No 232
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=25.93 E-value=37 Score=21.51 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=8.6
Q ss_pred CcccEEEEEecC
Q 026534 9 AHRGIGFITFAS 20 (237)
Q Consensus 9 ~skG~aFV~F~~ 20 (237)
..|||+||+=.+
T Consensus 13 ~~kGyGFI~~~~ 24 (69)
T PRK09507 13 ESKGFGFITPED 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 468999996443
No 233
>PRK15463 cold shock-like protein CspF; Provisional
Probab=24.76 E-value=40 Score=21.48 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=8.6
Q ss_pred CcccEEEEEecC
Q 026534 9 AHRGIGFITFAS 20 (237)
Q Consensus 9 ~skG~aFV~F~~ 20 (237)
..|||+||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK15463 14 GKSGKGLITPSD 25 (70)
T ss_pred CCCceEEEecCC
Confidence 458999996543
No 234
>PRK10943 cold shock-like protein CspC; Provisional
Probab=24.58 E-value=39 Score=21.39 Aligned_cols=12 Identities=50% Similarity=0.814 Sum_probs=8.7
Q ss_pred CcccEEEEEecC
Q 026534 9 AHRGIGFITFAS 20 (237)
Q Consensus 9 ~skG~aFV~F~~ 20 (237)
..|||+||+=.+
T Consensus 13 ~~kGfGFI~~~~ 24 (69)
T PRK10943 13 ESKGFGFITPAD 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 468999996443
No 235
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=23.82 E-value=1.8e+02 Score=19.44 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEc
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 151 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~ 151 (237)
..-|||++++..+.+.-...+.+..+.-.-+-+..+ .+ ..||+|-.+-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~-~n--eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD-NN--EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc-CC--CCCEEEEEeC
Confidence 456999999999888766666664443333333333 22 6788888763
No 236
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.34 E-value=39 Score=29.38 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=46.1
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHHhc--CCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 102 KKIFVGRLPQEATA--------EDLRRYFSR--FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 102 ~~l~v~~lp~~~~~--------~~l~~~F~~--~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
..+|+.++...... +++..+|.. .+.+..+..-++..+..++|-.|++|.....+++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45677777665444 489999987 5677777777776566678889999999999999974
No 237
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=23.05 E-value=1.7e+02 Score=22.65 Aligned_cols=9 Identities=56% Similarity=0.726 Sum_probs=3.9
Q ss_pred hcCCcEEEE
Q 026534 123 SRFGRILDV 131 (237)
Q Consensus 123 ~~~G~i~~~ 131 (237)
+-||.|.++
T Consensus 96 EIfG~i~d~ 104 (215)
T KOG3262|consen 96 EIFGPINDV 104 (215)
T ss_pred hhccccccc
Confidence 334444433
No 238
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.29 E-value=1e+02 Score=18.96 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=21.1
Q ss_pred EecCHHHHHHHHhccceeCCcEEEEeecCC
Q 026534 17 TFASADSVENLMVDTHELGGSTVVVDRATP 46 (237)
Q Consensus 17 ~F~~~~~A~~Ai~~~~~~~gr~i~v~~a~~ 46 (237)
.|.+.++...||..-....+..+.|..+.+
T Consensus 9 ~F~~~~e~k~av~~yai~~~~~~~v~ksd~ 38 (67)
T PF03108_consen 9 TFPSKEEFKEAVREYAIKNGFEFKVKKSDK 38 (67)
T ss_pred EECCHHHHHHHHHHHHHhcCcEEEEeccCC
Confidence 689999999999544445666666655543
No 239
>PRK09890 cold shock protein CspG; Provisional
Probab=21.37 E-value=49 Score=21.01 Aligned_cols=11 Identities=55% Similarity=0.881 Sum_probs=8.2
Q ss_pred CcccEEEEEec
Q 026534 9 AHRGIGFITFA 19 (237)
Q Consensus 9 ~skG~aFV~F~ 19 (237)
..|||+||+=.
T Consensus 14 ~~kGfGFI~~~ 24 (70)
T PRK09890 14 ADKGFGFITPD 24 (70)
T ss_pred CCCCcEEEecC
Confidence 45899999644
No 240
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=21.02 E-value=51 Score=20.92 Aligned_cols=11 Identities=55% Similarity=0.881 Sum_probs=8.1
Q ss_pred CcccEEEEEec
Q 026534 9 AHRGIGFITFA 19 (237)
Q Consensus 9 ~skG~aFV~F~ 19 (237)
..|||+||+=.
T Consensus 14 ~~kGfGFI~~~ 24 (70)
T PRK10354 14 ADKGFGFITPD 24 (70)
T ss_pred CCCCcEEEecC
Confidence 45899999633
No 241
>PHA01632 hypothetical protein
Probab=20.97 E-value=1.1e+02 Score=18.59 Aligned_cols=20 Identities=30% Similarity=0.727 Sum_probs=16.2
Q ss_pred EEcCCCCCCCHHHHHHHHhc
Q 026534 105 FVGRLPQEATAEDLRRYFSR 124 (237)
Q Consensus 105 ~v~~lp~~~~~~~l~~~F~~ 124 (237)
.|..+|...|+++|+.++.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 34688999999999988754
No 242
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.68 E-value=67 Score=25.47 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=10.0
Q ss_pred CcceEEEEEcCH
Q 026534 142 HRGFGFVTFAEE 153 (237)
Q Consensus 142 ~~g~afv~f~~~ 153 (237)
.|.|+||+|.+.
T Consensus 108 ~RPY~FieFD~~ 119 (216)
T KOG0862|consen 108 SRPYAFIEFDTF 119 (216)
T ss_pred CCCeeEEehhHH
Confidence 678999999764
No 243
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=20.40 E-value=1.9e+02 Score=25.73 Aligned_cols=12 Identities=8% Similarity=0.138 Sum_probs=5.0
Q ss_pred EEEEecCHHHHH
Q 026534 14 GFITFASADSVE 25 (237)
Q Consensus 14 aFV~F~~~~~A~ 25 (237)
+.|-..+.+.|.
T Consensus 78 aLil~PtreLa~ 89 (456)
T PRK10590 78 ALILTPTRELAA 89 (456)
T ss_pred EEEEeCcHHHHH
Confidence 344444444433
Done!