Query 026534
Match_columns 237
No_of_seqs 182 out of 2266
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 15:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 3.8E-29 1.3E-33 194.7 15.9 142 1-184 45-188 (196)
2 2cjk_A Nuclear polyadenylated 100.0 1.7E-28 5.7E-33 186.3 10.1 132 1-180 35-167 (167)
3 1b7f_A Protein (SXL-lethal pro 99.9 8E-27 2.7E-31 177.1 15.3 128 1-176 35-168 (168)
4 2qfj_A FBP-interacting repress 99.9 1.1E-26 3.8E-31 183.4 15.8 147 1-184 60-210 (216)
5 1fje_B Nucleolin RBD12, protei 99.9 1.2E-26 4.1E-31 177.5 14.0 129 1-180 44-175 (175)
6 4f02_A Polyadenylate-binding p 99.9 4.2E-27 1.5E-31 185.9 11.5 134 1-182 47-184 (213)
7 1fxl_A Paraneoplastic encephal 99.9 1.8E-26 6.1E-31 174.8 14.3 128 1-176 34-167 (167)
8 2yh0_A Splicing factor U2AF 65 99.9 2.1E-26 7.3E-31 179.3 15.1 152 3-182 43-197 (198)
9 3md3_A Nuclear and cytoplasmic 99.9 3.6E-26 1.2E-30 172.9 15.8 130 2-178 33-166 (166)
10 2g4b_A Splicing factor U2AF 65 99.9 2.4E-26 8.3E-31 175.1 12.1 125 5-177 45-172 (172)
11 2kn4_A Immunoglobulin G-bindin 99.9 5E-25 1.7E-29 166.0 14.6 139 9-183 11-154 (158)
12 2ghp_A U4/U6 snRNA-associated 99.9 8.5E-25 2.9E-29 180.5 15.9 137 1-180 150-292 (292)
13 3smz_A Protein raver-1, ribonu 99.9 6E-25 2.1E-29 180.7 14.0 136 1-182 127-267 (284)
14 3nmr_A Cugbp ELAV-like family 99.9 1.1E-24 3.9E-29 166.1 12.2 129 1-177 35-175 (175)
15 3pgw_A U1-A; protein-RNA compl 99.9 5.3E-23 1.8E-27 168.9 17.8 75 98-177 204-281 (282)
16 3tyt_A Heterogeneous nuclear r 99.9 1.2E-23 4.2E-28 165.0 10.7 154 10-176 41-204 (205)
17 2adc_A Polypyrimidine tract-bi 99.9 7.6E-23 2.6E-27 163.2 15.2 151 11-179 72-228 (229)
18 1qm9_A Polypyrimidine tract-bi 99.9 1.3E-22 4.6E-27 158.0 14.4 151 11-179 41-197 (198)
19 3smz_A Protein raver-1, ribonu 99.9 1.7E-22 5.7E-27 166.1 15.1 120 8-181 54-177 (284)
20 2i2y_A Fusion protein consists 99.9 1.1E-22 3.7E-27 152.0 12.1 136 7-180 9-149 (150)
21 3sde_A Paraspeckle component 1 99.9 2.2E-22 7.4E-27 163.7 13.0 120 8-182 55-182 (261)
22 2ghp_A U4/U6 snRNA-associated 99.9 5E-22 1.7E-26 163.8 12.8 124 2-183 74-201 (292)
23 1h2v_Z 20 kDa nuclear CAP bind 99.8 8.2E-21 2.8E-25 142.6 12.3 86 98-183 36-123 (156)
24 4fxv_A ELAV-like protein 1; RN 99.8 5.5E-21 1.9E-25 132.6 10.4 81 98-178 16-98 (99)
25 2lxi_A RNA-binding protein 10; 99.8 6.4E-21 2.2E-25 130.3 8.3 82 101-182 1-86 (91)
26 2cqg_A TDP-43, TAR DNA-binding 99.8 8.2E-20 2.8E-24 127.6 13.3 87 98-184 12-98 (103)
27 2dgs_A DAZ-associated protein 99.8 1.3E-19 4.3E-24 125.7 13.1 87 98-184 7-94 (99)
28 2cqd_A RNA-binding region cont 99.8 4.4E-19 1.5E-23 126.5 16.0 86 98-183 14-100 (116)
29 1whw_A Hypothetical protein ri 99.8 1.9E-19 6.4E-24 124.8 13.4 87 98-184 5-93 (99)
30 1x5u_A Splicing factor 3B subu 99.8 2.4E-19 8.1E-24 125.6 13.5 88 97-184 11-100 (105)
31 2lea_A Serine/arginine-rich sp 99.8 2.3E-20 7.9E-25 136.8 8.3 86 98-183 44-131 (135)
32 2dnm_A SRP46 splicing factor; 99.8 1.1E-19 3.8E-24 126.9 11.3 89 96-184 8-98 (103)
33 2cq0_A Eukaryotic translation 99.8 1.5E-19 5.2E-24 126.2 11.8 87 98-184 12-100 (103)
34 2dnz_A Probable RNA-binding pr 99.8 2E-19 6.9E-24 123.6 12.2 85 99-183 3-89 (95)
35 1u6f_A Tcubp1, RNA-binding pro 99.8 3.1E-19 1.1E-23 131.4 13.7 87 97-183 38-126 (139)
36 3s8s_A Histone-lysine N-methyl 99.8 1.5E-19 5E-24 127.8 10.7 82 99-180 4-87 (110)
37 1x5t_A Splicing factor 3B subu 99.8 1.8E-19 6.2E-24 124.1 10.8 86 99-184 3-91 (96)
38 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.8E-19 6.2E-24 125.6 10.8 87 98-184 9-97 (102)
39 2cpz_A CUG triplet repeat RNA- 99.8 3.1E-19 1.1E-23 127.1 12.2 87 98-184 22-110 (115)
40 2dgo_A Cytotoxic granule-assoc 99.8 1E-18 3.5E-23 124.4 14.9 87 98-184 12-100 (115)
41 2fy1_A RNA-binding motif prote 99.8 4.2E-19 1.4E-23 126.7 12.8 84 98-182 4-89 (116)
42 1x5s_A Cold-inducible RNA-bind 99.8 2.1E-19 7.1E-24 125.3 10.8 87 98-184 9-97 (102)
43 2cph_A RNA binding motif prote 99.8 5.3E-19 1.8E-23 124.2 12.8 88 97-184 11-102 (107)
44 3q2s_C Cleavage and polyadenyl 99.8 2.5E-20 8.7E-25 148.4 6.5 80 100-179 67-150 (229)
45 1wi8_A EIF-4B, eukaryotic tran 99.8 6.6E-19 2.3E-23 123.2 12.7 84 98-183 12-98 (104)
46 1x4h_A RNA-binding protein 28; 99.8 9.3E-19 3.2E-23 123.8 13.4 87 98-184 12-106 (111)
47 2lkz_A RNA-binding protein 5; 99.8 7.3E-20 2.5E-24 125.7 7.3 81 98-178 6-94 (95)
48 2dnh_A Bruno-like 5, RNA bindi 99.8 7.1E-19 2.4E-23 123.2 12.5 86 98-184 12-102 (105)
49 2do4_A Squamous cell carcinoma 99.8 8E-19 2.7E-23 121.8 12.6 84 98-182 14-99 (100)
50 2d9p_A Polyadenylate-binding p 99.8 5.3E-19 1.8E-23 123.4 11.6 85 98-184 12-98 (103)
51 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.2E-19 7.4E-24 136.1 10.0 87 98-184 69-157 (165)
52 2dgp_A Bruno-like 4, RNA bindi 99.8 5.2E-19 1.8E-23 124.1 11.2 86 98-183 10-100 (106)
53 3md1_A Nuclear and cytoplasmic 99.8 4.4E-19 1.5E-23 118.8 10.3 80 101-180 1-82 (83)
54 2dng_A Eukaryotic translation 99.8 1.2E-18 4E-23 121.7 12.8 84 98-183 12-97 (103)
55 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.5E-19 1.2E-23 120.4 9.5 81 99-179 4-86 (87)
56 2dh8_A DAZ-associated protein 99.8 4E-19 1.4E-23 124.5 9.9 87 98-184 13-100 (105)
57 3ex7_B RNA-binding protein 8A; 99.8 4.1E-19 1.4E-23 128.6 10.2 86 98-183 19-106 (126)
58 2cpf_A RNA binding motif prote 99.8 5E-19 1.7E-23 122.4 10.1 86 99-184 3-93 (98)
59 2dhg_A TRNA selenocysteine ass 99.8 7.7E-19 2.6E-23 122.8 10.9 86 98-184 6-95 (104)
60 2e5h_A Zinc finger CCHC-type a 99.8 1.7E-18 5.7E-23 118.8 12.3 80 98-177 13-94 (94)
61 1x4b_A Heterogeneous nuclear r 99.8 8.9E-19 3E-23 125.0 11.1 87 98-184 24-111 (116)
62 2cpe_A RNA-binding protein EWS 99.8 1.2E-18 4.2E-23 123.6 11.6 86 98-183 12-107 (113)
63 2rs2_A Musashi-1, RNA-binding 99.8 1.5E-18 5E-23 122.5 11.9 85 98-182 22-107 (109)
64 3pgw_S U1-70K; protein-RNA com 99.8 2.3E-18 8E-23 149.1 15.5 85 98-182 99-185 (437)
65 1p27_B RNA-binding protein 8A; 99.8 7E-19 2.4E-23 123.4 9.9 84 98-181 20-105 (106)
66 1oo0_B CG8781-PA, drosophila Y 99.8 9.2E-19 3.1E-23 123.7 10.3 85 98-182 23-109 (110)
67 1x4c_A Splicing factor, argini 99.8 5.1E-18 1.8E-22 119.5 14.1 79 98-183 12-97 (108)
68 2cqc_A Arginine/serine-rich sp 99.8 1.4E-18 4.9E-23 119.3 10.9 81 98-178 12-94 (95)
69 3s7r_A Heterogeneous nuclear r 99.8 1.9E-18 6.5E-23 116.8 11.2 79 98-176 8-87 (87)
70 2x1f_A MRNA 3'-END-processing 99.8 1.4E-18 4.9E-23 119.7 10.7 81 101-181 2-84 (96)
71 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.1E-18 1.8E-22 118.4 13.5 85 98-184 12-98 (103)
72 3p5t_L Cleavage and polyadenyl 99.8 1.4E-19 4.9E-24 123.2 5.4 82 102-183 2-87 (90)
73 2cq3_A RNA-binding protein 9; 99.8 5.5E-18 1.9E-22 118.2 13.6 85 98-184 12-98 (103)
74 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-18 3.6E-23 117.5 9.5 80 98-177 4-85 (85)
75 4f25_A Polyadenylate-binding p 99.8 8.8E-19 3E-23 124.8 9.4 82 100-183 4-87 (115)
76 2jrs_A RNA-binding protein 39; 99.8 1.6E-18 5.5E-23 122.1 10.5 83 98-180 23-107 (108)
77 1x4a_A Splicing factor, argini 99.8 7.2E-18 2.5E-22 118.9 13.9 83 98-183 19-103 (109)
78 2div_A TRNA selenocysteine ass 99.8 1.6E-18 5.5E-23 120.0 10.0 83 98-180 6-95 (99)
79 2kxn_B Transformer-2 protein h 99.8 1.2E-18 4.2E-23 126.6 9.8 84 98-181 43-128 (129)
80 1sjq_A Polypyrimidine tract-bi 99.8 1.8E-18 6.1E-23 120.3 9.8 81 98-184 13-97 (105)
81 2do0_A HnRNP M, heterogeneous 99.8 1.2E-17 4.2E-22 118.5 14.4 84 98-182 12-97 (114)
82 2dgx_A KIAA0430 protein; RRM d 99.8 4.1E-18 1.4E-22 117.4 10.9 82 98-182 6-93 (96)
83 1wg5_A Heterogeneous nuclear r 99.8 8.2E-18 2.8E-22 117.6 12.6 83 98-181 12-96 (104)
84 2dgw_A Probable RNA-binding pr 99.8 6.6E-18 2.3E-22 115.1 11.8 81 98-181 7-89 (91)
85 4a8x_A RNA-binding protein wit 99.8 1.8E-18 6.1E-23 117.1 8.8 82 100-181 3-87 (88)
86 2la6_A RNA-binding protein FUS 99.8 3.3E-18 1.1E-22 118.5 10.3 81 97-177 9-99 (99)
87 2dgu_A Heterogeneous nuclear r 99.8 1.2E-17 4.2E-22 116.5 13.1 79 98-184 8-88 (103)
88 3ucg_A Polyadenylate-binding p 99.8 4.9E-18 1.7E-22 115.2 10.7 78 101-179 6-85 (89)
89 2dis_A Unnamed protein product 99.8 1.2E-17 4.2E-22 117.6 13.1 86 98-183 5-96 (109)
90 3r27_A HnRNP L, heterogeneous 99.8 4.7E-18 1.6E-22 117.0 10.4 77 98-180 18-98 (100)
91 2khc_A Testis-specific RNP-typ 99.8 6E-18 2.1E-22 120.9 11.3 80 98-177 37-118 (118)
92 2cq1_A PTB-like protein L; RRM 99.8 1.6E-17 5.4E-22 115.3 13.1 80 98-183 12-95 (101)
93 1wez_A HnRNP H', FTP-3, hetero 99.8 3.9E-18 1.3E-22 118.8 10.0 81 98-180 12-93 (102)
94 3ns6_A Eukaryotic translation 99.8 3.9E-19 1.3E-23 123.5 4.8 81 100-180 5-94 (100)
95 2dgv_A HnRNP M, heterogeneous 99.8 5.2E-18 1.8E-22 115.8 10.0 83 98-182 5-89 (92)
96 2ad9_A Polypyrimidine tract-bi 99.8 5E-18 1.7E-22 120.8 10.0 82 97-184 27-112 (119)
97 1x4d_A Matrin 3; structural ge 99.8 5.6E-18 1.9E-22 117.6 9.8 79 98-182 12-95 (102)
98 1s79_A Lupus LA protein; RRM, 99.7 5.3E-18 1.8E-22 118.3 9.5 80 98-178 8-88 (103)
99 2cqp_A RNA-binding protein 12; 99.7 3.2E-18 1.1E-22 118.3 8.3 82 98-179 12-95 (98)
100 3ulh_A THO complex subunit 4; 99.7 7.1E-18 2.4E-22 118.4 10.2 79 98-177 26-106 (107)
101 2fc9_A NCL protein; structure 99.7 2.2E-17 7.5E-22 114.7 12.5 81 98-182 12-94 (101)
102 2cq4_A RNA binding motif prote 99.7 1E-18 3.5E-23 124.3 5.7 83 99-182 23-107 (114)
103 2ywk_A Putative RNA-binding pr 99.7 5.2E-18 1.8E-22 116.5 9.1 80 98-178 13-94 (95)
104 3n9u_C Cleavage and polyadenyl 99.7 4.4E-18 1.5E-22 127.5 9.4 80 100-179 54-137 (156)
105 2dnq_A RNA-binding protein 4B; 99.7 1.5E-17 5E-22 113.2 11.1 78 98-183 5-84 (90)
106 1wex_A Hypothetical protein (r 99.7 2.5E-17 8.7E-22 114.9 12.4 80 98-183 12-95 (104)
107 2m2b_A RNA-binding protein 10; 99.7 5.9E-18 2E-22 123.3 9.4 84 98-182 20-111 (131)
108 2cpi_A CCR4-NOT transcription 99.7 9.9E-18 3.4E-22 118.6 10.3 84 98-181 12-103 (111)
109 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3E-18 1E-22 119.0 7.4 81 98-180 16-99 (100)
110 2jwn_A Embryonic polyadenylate 99.7 1.3E-17 4.3E-22 120.3 10.8 82 100-182 35-118 (124)
111 2fc8_A NCL protein; structure 99.7 1.3E-17 4.3E-22 116.1 10.4 82 98-182 12-95 (102)
112 2cpy_A RNA-binding protein 12; 99.7 9.7E-18 3.3E-22 119.2 9.9 82 98-180 12-95 (114)
113 2kt5_A RNA and export factor-b 99.7 3.4E-17 1.2E-21 118.1 12.9 86 98-184 32-119 (124)
114 2cpx_A Hypothetical protein FL 99.7 3.7E-18 1.3E-22 121.5 7.7 87 98-184 22-110 (115)
115 2mss_A Protein (musashi1); RNA 99.7 5.2E-18 1.8E-22 111.3 7.8 74 103-176 1-75 (75)
116 1p1t_A Cleavage stimulation fa 99.7 2.1E-18 7.3E-23 120.5 6.2 84 99-182 6-91 (104)
117 3d2w_A TAR DNA-binding protein 99.7 1E-17 3.6E-22 113.7 9.4 80 98-182 8-87 (89)
118 2hgn_A Heterogeneous nuclear r 99.7 1.6E-18 5.4E-23 127.2 5.6 82 98-181 43-125 (139)
119 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.6E-17 1.6E-21 119.7 13.4 80 97-176 59-140 (140)
120 2dgt_A RNA-binding protein 30; 99.7 3.2E-17 1.1E-21 111.9 11.6 79 98-184 7-87 (92)
121 1x4f_A Matrin 3; structural ge 99.7 2E-17 6.8E-22 116.5 10.7 80 98-183 22-106 (112)
122 1why_A Hypothetical protein ri 99.7 3.7E-17 1.3E-21 112.7 11.7 78 98-181 14-95 (97)
123 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.7E-18 1.3E-22 112.6 6.3 75 102-176 1-76 (77)
124 1x4e_A RNA binding motif, sing 99.7 2.6E-18 9E-23 115.6 5.7 79 99-177 3-83 (85)
125 1wf0_A TDP-43, TAR DNA-binding 99.7 8.5E-18 2.9E-22 113.9 8.1 80 99-183 3-82 (88)
126 1x5o_A RNA binding motif, sing 99.7 5.2E-17 1.8E-21 115.3 11.7 81 98-179 22-112 (114)
127 2nlw_A Eukaryotic translation 99.7 3.1E-17 1.1E-21 114.8 10.4 81 98-180 12-101 (105)
128 2cpd_A Apobec-1 stimulating pr 99.7 1.1E-16 3.8E-21 110.7 13.0 77 98-182 12-92 (99)
129 2ek1_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 117.0 5.4 80 99-178 13-94 (95)
130 1x4g_A Nucleolysin TIAR; struc 99.7 4.9E-17 1.7E-21 114.5 10.8 81 98-184 22-104 (109)
131 1iqt_A AUF1, heterogeneous nuc 99.7 7.6E-18 2.6E-22 110.5 6.1 74 103-176 1-75 (75)
132 2xs2_A Deleted in azoospermia- 99.7 7.4E-18 2.5E-22 117.3 6.3 84 98-182 6-89 (102)
133 2hvz_A Splicing factor, argini 99.7 4.3E-17 1.5E-21 113.2 10.1 76 102-182 1-78 (101)
134 2lcw_A RNA-binding protein FUS 99.6 4.6E-19 1.6E-23 126.5 0.0 85 98-182 4-98 (116)
135 2hgl_A HNRPF protein, heteroge 99.7 9.2E-18 3.2E-22 122.7 6.9 81 98-180 41-126 (136)
136 2err_A Ataxin-2-binding protei 99.7 2.1E-17 7.3E-22 116.5 8.5 82 97-180 25-108 (109)
137 2jvr_A Nucleolar protein 3; RN 99.7 3.1E-17 1.1E-21 115.7 9.1 79 98-180 25-106 (111)
138 2ki2_A SS-DNA binding protein 99.7 4E-18 1.4E-22 116.0 4.3 80 102-182 2-83 (90)
139 2dnn_A RNA-binding protein 12; 99.7 2.6E-17 8.9E-22 115.8 8.6 80 98-179 13-93 (109)
140 2wbr_A GW182, gawky, LD47780P; 99.7 4.2E-17 1.5E-21 108.6 9.1 72 100-177 6-79 (89)
141 2hgm_A HNRPF protein, heteroge 99.7 1.2E-17 4.2E-22 120.2 7.0 80 98-179 39-121 (126)
142 2a3j_A U1 small nuclear ribonu 99.7 6.5E-17 2.2E-21 116.8 10.7 81 98-181 26-112 (127)
143 1fj7_A Nucleolin RBD1, protein 99.7 5.9E-18 2E-22 117.6 4.9 84 98-182 14-98 (101)
144 2dnp_A RNA-binding protein 14; 99.7 9.6E-17 3.3E-21 109.1 10.8 77 98-182 6-84 (90)
145 2db1_A Heterogeneous nuclear r 99.7 1.9E-17 6.4E-22 118.4 7.5 82 98-180 14-99 (118)
146 1wel_A RNA-binding protein 12; 99.7 9E-18 3.1E-22 121.1 5.4 82 98-180 22-105 (124)
147 2cpj_A Non-POU domain-containi 99.7 1E-16 3.5E-21 110.9 10.6 79 98-182 12-92 (99)
148 2dnl_A Cytoplasmic polyadenyla 99.7 4.1E-17 1.4E-21 115.9 8.7 81 98-179 5-88 (114)
149 2e5g_A U6 snRNA-specific termi 99.7 2E-16 6.7E-21 108.4 11.4 81 98-184 5-87 (94)
150 2e5j_A Methenyltetrahydrofolat 99.7 1.1E-16 3.7E-21 110.4 9.7 79 98-181 16-96 (97)
151 2ytc_A PRE-mRNA-splicing facto 99.7 1.9E-16 6.7E-21 106.3 10.7 74 98-177 9-85 (85)
152 3beg_B Splicing factor, argini 99.7 5.4E-17 1.8E-21 115.5 8.3 75 99-180 14-95 (115)
153 1wf1_A RNA-binding protein RAL 99.7 1.8E-16 6.2E-21 111.8 10.9 77 98-182 24-103 (110)
154 2jvo_A Nucleolar protein 3; nu 99.7 8.3E-17 2.8E-21 113.2 8.9 77 98-182 28-106 (108)
155 2kvi_A Nuclear polyadenylated 99.7 3.7E-17 1.3E-21 112.5 6.8 78 98-183 7-87 (96)
156 2lmi_A GRSF-1, G-rich sequence 99.7 3.3E-17 1.1E-21 115.1 6.4 82 98-180 8-93 (107)
157 2krb_A Eukaryotic translation 99.7 5.2E-17 1.8E-21 108.2 7.0 70 102-173 2-80 (81)
158 4f02_A Polyadenylate-binding p 99.7 1.4E-16 4.9E-21 125.4 10.4 83 98-180 12-96 (213)
159 1x5p_A Negative elongation fac 99.7 1.1E-15 3.6E-20 105.4 13.5 79 98-184 12-92 (97)
160 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-16 3.9E-21 110.0 8.4 80 98-182 13-94 (96)
161 2cqh_A IGF-II mRNA-binding pro 99.7 9.9E-17 3.4E-21 109.7 8.0 79 98-183 5-87 (93)
162 2xnq_A Nuclear polyadenylated 99.7 2.9E-16 1E-20 108.2 10.4 74 98-179 19-95 (97)
163 1nu4_A U1A RNA binding domain; 99.7 8.4E-17 2.9E-21 110.9 7.5 81 98-181 5-91 (97)
164 2e44_A Insulin-like growth fac 99.7 2E-16 6.7E-21 108.8 9.3 80 98-181 12-94 (96)
165 2la4_A Nuclear and cytoplasmic 99.7 9.8E-17 3.4E-21 111.4 7.6 75 99-179 25-101 (101)
166 2f3j_A RNA and export factor b 99.7 2E-16 6.9E-21 120.9 9.9 83 97-180 84-168 (177)
167 2dha_A FLJ20171 protein; RRM d 99.7 3.8E-17 1.3E-21 117.4 5.5 81 99-180 21-106 (123)
168 3lqv_A PRE-mRNA branch site pr 99.7 3E-16 1E-20 111.5 9.6 81 98-181 5-87 (115)
169 2cq2_A Hypothetical protein LO 99.7 4.5E-16 1.5E-20 109.6 9.7 81 98-184 22-111 (114)
170 2cjk_A Nuclear polyadenylated 99.7 2.4E-16 8.2E-21 118.9 8.8 81 100-180 2-82 (167)
171 1whx_A Hypothetical protein ri 99.7 3.7E-16 1.3E-20 110.4 8.3 75 100-180 9-85 (111)
172 1l3k_A Heterogeneous nuclear r 99.7 6.9E-16 2.3E-20 119.4 10.6 85 98-182 10-95 (196)
173 1fxl_A Paraneoplastic encephal 99.6 1E-15 3.4E-20 115.3 10.6 81 101-181 2-84 (167)
174 1b7f_A Protein (SXL-lethal pro 99.6 8.3E-16 2.8E-20 116.0 9.9 83 100-182 2-86 (168)
175 2j8a_A Histone-lysine N-methyl 99.6 3.4E-16 1.2E-20 111.1 6.9 76 102-177 3-94 (136)
176 1sjr_A Polypyrimidine tract-bi 99.6 1.3E-15 4.3E-20 113.9 10.2 80 98-181 43-126 (164)
177 3egn_A RNA-binding protein 40; 99.6 1.3E-16 4.4E-21 117.9 4.4 86 98-183 42-134 (143)
178 2diu_A KIAA0430 protein; struc 99.6 4.5E-15 1.5E-19 99.7 10.4 75 99-183 6-88 (96)
179 2voo_A Lupus LA protein; RNA-b 99.6 1.2E-14 4.2E-19 112.5 14.3 77 101-178 109-186 (193)
180 2e5i_A Heterogeneous nuclear r 99.6 7.6E-15 2.6E-19 105.2 11.9 75 101-181 25-104 (124)
181 3zzy_A Polypyrimidine tract-bi 99.6 2.2E-15 7.7E-20 108.5 9.1 77 99-180 26-107 (130)
182 1wg1_A KIAA1579 protein, homol 99.6 1.3E-15 4.5E-20 103.0 7.3 73 100-179 4-78 (88)
183 3tyt_A Heterogeneous nuclear r 99.6 5.4E-15 1.9E-19 115.7 10.2 76 100-180 3-81 (205)
184 3md3_A Nuclear and cytoplasmic 99.6 7.9E-15 2.7E-19 110.2 10.1 79 102-181 1-81 (166)
185 2qfj_A FBP-interacting repress 99.6 6.5E-15 2.2E-19 115.6 9.8 81 100-180 27-109 (216)
186 2hzc_A Splicing factor U2AF 65 99.6 8.4E-15 2.9E-19 98.6 8.5 70 99-175 4-86 (87)
187 2bz2_A Negative elongation fac 99.6 7.5E-15 2.6E-19 105.2 8.5 78 98-183 36-115 (121)
188 2d9o_A DNAJ (HSP40) homolog, s 99.6 9.8E-14 3.4E-18 95.7 13.1 79 101-184 10-95 (100)
189 2pe8_A Splicing factor 45; RRM 99.5 3.1E-14 1.1E-18 99.3 9.6 81 98-178 5-93 (105)
190 3nmr_A Cugbp ELAV-like family 99.5 1.7E-14 5.8E-19 109.4 8.6 82 100-181 2-90 (175)
191 3pgw_A U1-A; protein-RNA compl 99.5 5.2E-14 1.8E-18 115.1 11.1 80 98-180 6-91 (282)
192 3u1l_A PRE-mRNA-splicing facto 99.5 2.4E-14 8.1E-19 113.8 7.8 79 98-182 131-232 (240)
193 2adc_A Polypyrimidine tract-bi 99.5 6.7E-14 2.3E-18 111.2 9.9 78 98-180 31-111 (229)
194 2dit_A HIV TAT specific factor 99.5 3.9E-13 1.3E-17 94.9 11.9 82 98-183 12-106 (112)
195 1fje_B Nucleolin RBD12, protei 99.5 2.7E-14 9.2E-19 108.5 4.0 84 98-182 10-94 (175)
196 1qm9_A Polypyrimidine tract-bi 99.4 1.6E-13 5.5E-18 106.4 7.9 76 101-181 3-81 (198)
197 4f25_A Polyadenylate-binding p 99.4 6.4E-14 2.2E-18 99.5 4.1 46 2-49 38-85 (115)
198 3sde_A Paraspeckle component 1 99.4 5.4E-13 1.8E-17 108.1 9.7 75 98-178 19-95 (261)
199 2g4b_A Splicing factor U2AF 65 99.4 1.3E-12 4.5E-17 98.7 9.9 76 100-181 3-90 (172)
200 3v4m_A Splicing factor U2AF 65 99.4 1.1E-12 3.7E-17 91.4 8.4 80 99-178 3-96 (105)
201 2yh0_A Splicing factor U2AF 65 99.4 2E-12 6.7E-17 100.0 10.0 75 100-181 3-90 (198)
202 1jmt_A Splicing factor U2AF 35 99.3 3.3E-13 1.1E-17 93.9 3.3 70 106-176 20-103 (104)
203 3ue2_A Poly(U)-binding-splicin 99.3 2.5E-12 8.5E-17 91.4 7.2 78 100-177 19-107 (118)
204 3tht_A Alkylated DNA repair pr 99.3 5.3E-12 1.8E-16 105.4 9.8 74 98-177 15-97 (345)
205 2lxi_A RNA-binding protein 10; 99.3 6E-12 2.1E-16 85.4 6.4 49 1-49 34-85 (91)
206 4fxv_A ELAV-like protein 1; RN 99.2 5.4E-12 1.8E-16 87.0 4.5 46 1-46 51-98 (99)
207 2lkz_A RNA-binding protein 5; 99.2 9.2E-12 3.1E-16 85.1 5.4 46 1-46 43-94 (95)
208 1owx_A Lupus LA protein, SS-B, 99.2 9.2E-11 3.1E-15 83.0 9.0 74 98-177 15-94 (121)
209 3p5t_L Cleavage and polyadenyl 99.2 9.3E-12 3.2E-16 84.2 2.7 49 1-49 35-85 (90)
210 3s6e_A RNA-binding protein 39; 99.2 1.6E-10 5.6E-15 81.4 8.8 77 98-178 4-92 (114)
211 3s8s_A Histone-lysine N-methyl 99.2 3.1E-11 1E-15 84.8 4.9 48 1-48 38-87 (110)
212 2dgs_A DAZ-associated protein 99.1 9.3E-11 3.2E-15 80.6 6.7 50 1-50 42-92 (99)
213 1x5t_A Splicing factor 3B subu 99.1 1.3E-10 4.3E-15 79.4 6.7 50 1-50 38-89 (96)
214 2dng_A Eukaryotic translation 99.1 8.5E-11 2.9E-15 81.4 5.9 50 1-50 46-96 (103)
215 2fc8_A NCL protein; structure 99.1 8.9E-11 3E-15 81.1 5.8 50 1-50 44-95 (102)
216 3md1_A Nuclear and cytoplasmic 99.1 7.9E-11 2.7E-15 78.1 5.3 48 1-48 33-82 (83)
217 3ns6_A Eukaryotic translation 99.1 2.5E-11 8.6E-16 83.7 2.8 48 1-48 44-94 (100)
218 2cqg_A TDP-43, TAR DNA-binding 99.1 1.1E-10 3.9E-15 80.7 6.1 51 1-51 47-97 (103)
219 1whw_A Hypothetical protein ri 99.1 2.2E-10 7.4E-15 78.7 7.3 50 1-50 40-91 (99)
220 2cqb_A Peptidyl-prolyl CIS-tra 99.1 1.8E-10 6E-15 79.6 6.8 50 1-50 44-95 (102)
221 1x4h_A RNA-binding protein 28; 99.1 2.5E-10 8.4E-15 80.0 7.4 51 1-51 47-105 (111)
222 3bs9_A Nucleolysin TIA-1 isofo 99.1 8.5E-11 2.9E-15 78.7 4.6 47 1-47 38-86 (87)
223 1wi8_A EIF-4B, eukaryotic tran 99.1 2.5E-10 8.5E-15 79.2 7.1 50 1-50 46-97 (104)
224 1x5u_A Splicing factor 3B subu 99.1 2E-10 6.9E-15 79.7 6.5 50 1-50 47-98 (105)
225 2cpe_A RNA-binding protein EWS 99.1 2.5E-10 8.6E-15 80.3 7.1 50 1-50 55-106 (113)
226 2mss_A Protein (musashi1); RNA 99.1 1.1E-10 3.9E-15 75.9 4.8 44 1-44 31-75 (75)
227 2x1f_A MRNA 3'-END-processing 99.1 2.5E-10 8.5E-15 78.0 6.5 49 1-49 34-84 (96)
228 2dnz_A Probable RNA-binding pr 99.1 2E-10 6.9E-15 78.2 6.0 49 1-49 37-87 (95)
229 1fj7_A Nucleolin RBD1, protein 99.1 9.5E-11 3.3E-15 80.8 4.2 49 1-49 48-97 (101)
230 2dnm_A SRP46 splicing factor; 99.1 1.8E-10 6.2E-15 79.7 5.5 49 1-49 45-95 (103)
231 2cq0_A Eukaryotic translation 99.1 2.1E-10 7E-15 79.4 5.7 49 1-49 47-97 (103)
232 2rs2_A Musashi-1, RNA-binding 99.0 3.2E-10 1.1E-14 79.4 6.2 50 1-50 57-107 (109)
233 1x4b_A Heterogeneous nuclear r 99.0 3E-10 1E-14 80.3 6.1 51 1-51 59-110 (116)
234 2cpz_A CUG triplet repeat RNA- 99.0 2.4E-10 8.1E-15 80.7 5.6 50 1-50 57-108 (115)
235 2dgo_A Cytotoxic granule-assoc 99.0 4.9E-10 1.7E-14 79.1 7.1 50 1-50 47-98 (115)
236 1x5s_A Cold-inducible RNA-bind 99.0 2.4E-10 8.1E-15 78.9 5.3 50 1-50 44-95 (102)
237 2hvz_A Splicing factor, argini 99.0 1.9E-10 6.5E-15 79.3 4.8 40 10-49 36-77 (101)
238 2dnr_A Synaptojanin-1; RRM dom 99.0 1.4E-09 4.7E-14 72.4 8.5 73 99-179 5-86 (91)
239 2j76_E EIF-4B, EIF4B, eukaryot 99.0 2.2E-10 7.7E-15 78.9 4.8 48 1-48 50-99 (100)
240 1wez_A HnRNP H', FTP-3, hetero 99.0 1.3E-10 4.3E-15 80.5 3.4 47 1-48 46-93 (102)
241 1oo0_B CG8781-PA, drosophila Y 99.0 4.1E-10 1.4E-14 78.9 5.7 48 1-48 58-107 (110)
242 3n9u_C Cleavage and polyadenyl 99.0 1.4E-10 5E-15 86.4 3.5 47 1-47 89-137 (156)
243 2dgw_A Probable RNA-binding pr 99.0 2.9E-10 1E-14 76.8 4.8 47 1-48 41-88 (91)
244 2dhg_A TRNA selenocysteine ass 99.0 2.5E-10 8.4E-15 79.1 4.4 51 1-52 42-95 (104)
245 2cph_A RNA binding motif prote 99.0 7.9E-10 2.7E-14 76.9 7.1 50 1-50 47-100 (107)
246 2la6_A RNA-binding protein FUS 99.0 2.3E-10 7.9E-15 78.6 4.2 45 1-45 53-99 (99)
247 2cpy_A RNA-binding protein 12; 99.0 2E-10 6.7E-15 81.1 3.9 47 1-48 48-95 (114)
248 3mdf_A Peptidyl-prolyl CIS-tra 99.0 3.6E-10 1.2E-14 75.2 4.9 45 1-45 39-85 (85)
249 2do4_A Squamous cell carcinoma 99.0 4.2E-10 1.4E-14 77.4 5.4 47 2-49 50-98 (100)
250 2dgp_A Bruno-like 4, RNA bindi 99.0 6.9E-10 2.4E-14 77.1 6.4 49 1-49 45-98 (106)
251 2m2b_A RNA-binding protein 10; 99.0 2E-10 6.9E-15 83.1 3.7 48 1-49 57-110 (131)
252 1iqt_A AUF1, heterogeneous nuc 99.0 2.4E-10 8.3E-15 74.2 3.8 44 1-44 31-75 (75)
253 2e5h_A Zinc finger CCHC-type a 99.0 5E-10 1.7E-14 76.0 5.5 45 1-45 48-94 (94)
254 2cqp_A RNA-binding protein 12; 99.0 3.5E-10 1.2E-14 77.4 4.7 46 2-47 48-95 (98)
255 2dis_A Unnamed protein product 99.0 1.5E-09 5E-14 75.8 8.0 47 3-49 44-94 (109)
256 2cqc_A Arginine/serine-rich sp 99.0 3.8E-10 1.3E-14 76.8 4.8 46 1-46 47-94 (95)
257 3s7r_A Heterogeneous nuclear r 99.0 3E-10 1E-14 76.0 4.2 44 1-44 43-87 (87)
258 2dh8_A DAZ-associated protein 99.0 2.6E-10 8.8E-15 79.2 4.0 50 1-50 48-98 (105)
259 1p27_B RNA-binding protein 8A; 99.0 2.6E-10 8.9E-15 79.3 4.0 48 1-48 55-104 (106)
260 2dnn_A RNA-binding protein 12; 99.0 5.3E-10 1.8E-14 78.2 5.5 46 1-47 47-93 (109)
261 2fc9_A NCL protein; structure 99.0 1.2E-09 4E-14 75.3 7.1 48 1-49 44-93 (101)
262 1u6f_A Tcubp1, RNA-binding pro 99.0 6.9E-10 2.4E-14 81.0 6.1 50 1-50 74-125 (139)
263 3ucg_A Polyadenylate-binding p 99.0 3.9E-10 1.3E-14 75.7 4.4 47 1-47 38-85 (89)
264 1wg5_A Heterogeneous nuclear r 99.0 9.7E-10 3.3E-14 76.2 6.5 47 1-48 48-95 (104)
265 2fy1_A RNA-binding motif prote 99.0 1E-09 3.4E-14 77.7 6.6 48 1-49 39-88 (116)
266 2jrs_A RNA-binding protein 39; 99.0 2.9E-10 9.9E-15 79.5 3.7 48 1-48 58-107 (108)
267 2ek1_A RNA-binding protein 12; 99.0 4E-10 1.4E-14 76.6 4.1 45 2-46 48-94 (95)
268 2kxn_B Transformer-2 protein h 99.0 4.4E-10 1.5E-14 81.1 4.5 48 1-48 78-127 (129)
269 2cqd_A RNA-binding region cont 99.0 2E-09 6.8E-14 76.0 7.8 48 1-49 49-98 (116)
270 2kn4_A Immunoglobulin G-bindin 99.0 1.2E-09 4E-14 81.5 6.9 48 1-48 102-151 (158)
271 3ex7_B RNA-binding protein 8A; 99.0 7.3E-10 2.5E-14 79.5 5.2 49 1-49 54-104 (126)
272 2div_A TRNA selenocysteine ass 98.9 4.8E-10 1.6E-14 76.9 4.0 48 1-48 42-95 (99)
273 2jwn_A Embryonic polyadenylate 98.9 1.1E-09 3.7E-14 78.4 5.6 48 1-48 68-116 (124)
274 2cpf_A RNA binding motif prote 98.9 5.8E-10 2E-14 76.4 4.0 44 7-50 46-91 (98)
275 2ki2_A SS-DNA binding protein 98.9 4E-10 1.4E-14 75.9 3.1 48 1-49 33-82 (90)
276 1p1t_A Cleavage stimulation fa 98.9 4.7E-10 1.6E-14 77.6 3.5 49 1-49 40-90 (104)
277 2cpi_A CCR4-NOT transcription 98.9 1.3E-09 4.5E-14 76.4 5.6 48 2-49 51-103 (111)
278 2d9p_A Polyadenylate-binding p 98.9 1.4E-09 4.7E-14 75.2 5.3 47 2-50 48-96 (103)
279 1s79_A Lupus LA protein; RRM, 98.9 7.3E-10 2.5E-14 76.7 3.8 45 1-46 43-88 (103)
280 1uaw_A Mouse-musashi-1; RNP-ty 98.9 5.4E-10 1.8E-14 72.9 2.9 44 1-45 32-77 (77)
281 2lea_A Serine/arginine-rich sp 98.9 1.3E-09 4.3E-14 79.3 5.2 49 1-49 79-129 (135)
282 1h2v_Z 20 kDa nuclear CAP bind 98.9 1.3E-09 4.5E-14 81.1 5.3 49 1-49 71-121 (156)
283 2hgl_A HNRPF protein, heteroge 98.9 4.8E-10 1.6E-14 81.6 2.7 46 1-47 79-125 (136)
284 2cq4_A RNA binding motif prote 98.9 1E-09 3.5E-14 77.3 4.3 48 1-48 57-105 (114)
285 2hgm_A HNRPF protein, heteroge 98.9 3.9E-10 1.3E-14 80.9 2.0 46 1-47 75-121 (126)
286 1wel_A RNA-binding protein 12; 98.9 3.5E-10 1.2E-14 81.0 1.7 47 2-48 58-105 (124)
287 2dnh_A Bruno-like 5, RNA bindi 98.9 1.7E-09 5.8E-14 74.9 5.2 49 1-50 47-100 (105)
288 2db1_A Heterogeneous nuclear r 98.9 1.2E-09 4.1E-14 77.6 4.4 46 1-47 52-98 (118)
289 2dgx_A KIAA0430 protein; RRM d 98.9 2.6E-09 9E-14 72.8 5.9 46 1-49 45-92 (96)
290 2pe8_A Splicing factor 45; RRM 98.9 1.5E-09 5.2E-14 75.3 4.8 45 2-46 46-93 (105)
291 3lqv_A PRE-mRNA branch site pr 98.9 3.3E-10 1.1E-14 79.9 1.4 41 7-47 43-85 (115)
292 3ulh_A THO complex subunit 4; 98.9 1.4E-09 4.8E-14 75.6 4.6 44 1-45 61-106 (107)
293 2kt5_A RNA and export factor-b 98.9 2.8E-09 9.6E-14 76.2 6.2 48 1-49 67-116 (124)
294 2lmi_A GRSF-1, G-rich sequence 98.9 7.3E-10 2.5E-14 77.3 3.0 47 1-48 46-93 (107)
295 4a8x_A RNA-binding protein wit 98.9 1.5E-09 5.2E-14 72.6 4.4 47 1-47 36-85 (88)
296 2khc_A Testis-specific RNP-typ 98.9 1.1E-09 3.7E-14 77.6 3.7 44 1-44 72-117 (118)
297 3q2s_C Cleavage and polyadenyl 98.9 7.2E-10 2.5E-14 87.9 2.8 47 1-47 102-150 (229)
298 1x4e_A RNA binding motif, sing 98.9 4.5E-10 1.5E-14 74.8 1.3 45 1-45 37-83 (85)
299 2lcw_A RNA-binding protein FUS 98.4 2.6E-10 8.8E-15 80.7 0.0 50 1-50 47-98 (116)
300 1jmt_A Splicing factor U2AF 35 98.9 2.2E-09 7.4E-14 74.5 4.7 43 1-44 59-103 (104)
301 2cqi_A Nucleolysin TIAR; RNA r 98.9 5.1E-09 1.8E-13 72.2 6.6 47 2-50 48-96 (103)
302 2wbr_A GW182, gawky, LD47780P; 98.9 3E-09 1E-13 70.7 5.1 38 8-45 40-79 (89)
303 2cpx_A Hypothetical protein FL 98.8 2.5E-09 8.5E-14 75.4 4.6 47 4-50 60-108 (115)
304 2do0_A HnRNP M, heterogeneous 98.8 6.9E-09 2.3E-13 72.9 6.8 46 2-48 48-95 (114)
305 2ywk_A Putative RNA-binding pr 98.8 2.2E-09 7.6E-14 72.9 4.0 44 2-46 49-94 (95)
306 2hgn_A Heterogeneous nuclear r 98.8 1E-09 3.5E-14 80.1 2.2 48 1-49 77-125 (139)
307 2nlw_A Eukaryotic translation 98.8 3.5E-09 1.2E-13 73.4 4.8 44 5-48 55-101 (105)
308 2dha_A FLJ20171 protein; RRM d 98.8 7.7E-10 2.6E-14 79.1 1.1 46 1-47 59-105 (123)
309 3v4m_A Splicing factor U2AF 65 98.8 6.5E-09 2.2E-13 72.2 5.8 46 1-46 47-96 (105)
310 2a3j_A U1 small nuclear ribonu 98.8 4.2E-09 1.4E-13 75.7 4.8 44 6-49 67-112 (127)
311 2cq3_A RNA-binding protein 9; 98.8 9.5E-09 3.3E-13 70.9 6.4 47 2-50 48-96 (103)
312 1rk8_A CG8781-PA, CG8781-PA pr 98.8 3E-09 1E-13 80.0 4.0 49 1-49 104-154 (165)
313 1fjc_A Nucleolin RBD2, protein 98.8 6.8E-09 2.3E-13 70.6 5.5 45 5-49 47-93 (96)
314 1ufw_A Synaptojanin 2; RNP dom 98.7 8.9E-09 3.1E-13 68.8 4.6 73 98-178 12-94 (95)
315 1x4a_A Splicing factor, argini 98.7 1.9E-08 6.5E-13 70.1 6.5 44 6-49 56-101 (109)
316 1x5o_A RNA binding motif, sing 98.7 8.1E-09 2.8E-13 72.6 4.6 46 1-47 57-112 (114)
317 2xs2_A Deleted in azoospermia- 98.7 2E-09 6.8E-14 74.2 1.3 48 1-49 41-88 (102)
318 2dgv_A HnRNP M, heterogeneous 98.7 1.1E-08 3.8E-13 69.0 4.5 44 6-49 43-88 (92)
319 2j8a_A Histone-lysine N-methyl 98.7 5.8E-09 2E-13 74.1 2.9 45 1-45 38-94 (136)
320 2e5j_A Methenyltetrahydrofolat 98.7 1.1E-08 3.6E-13 69.9 4.2 42 7-48 52-95 (97)
321 2krb_A Eukaryotic translation 98.7 7.1E-09 2.4E-13 68.3 3.1 37 5-41 41-80 (81)
322 3egn_A RNA-binding protein 40; 98.7 7.5E-09 2.6E-13 75.8 3.6 45 5-49 86-132 (143)
323 2jvr_A Nucleolar protein 3; RN 98.7 1.9E-08 6.6E-13 70.4 5.4 40 8-47 64-105 (111)
324 1x5p_A Negative elongation fac 98.7 3.6E-08 1.2E-12 67.2 6.4 42 8-49 46-89 (97)
325 2err_A Ataxin-2-binding protei 98.7 1.5E-08 5.1E-13 70.8 4.5 44 2-47 62-107 (109)
326 3ue2_A Poly(U)-binding-splicin 98.7 9.9E-09 3.4E-13 72.7 2.9 40 7-46 67-108 (118)
327 3pgw_S U1-70K; protein-RNA com 98.7 4.1E-08 1.4E-12 84.9 7.3 49 1-49 134-184 (437)
328 1nu4_A U1A RNA binding domain; 98.7 1.2E-08 4.1E-13 69.5 3.2 43 7-49 47-91 (97)
329 3dxb_A Thioredoxin N-terminall 98.6 6E-08 2.1E-12 76.3 7.4 66 112-177 140-211 (222)
330 2dit_A HIV TAT specific factor 98.6 3.5E-08 1.2E-12 69.2 5.4 41 9-49 62-104 (112)
331 2d9o_A DNAJ (HSP40) homolog, s 98.6 6E-08 2E-12 66.5 6.1 42 8-49 51-92 (100)
332 2cqh_A IGF-II mRNA-binding pro 98.6 4.5E-08 1.6E-12 66.1 5.4 41 9-49 42-85 (93)
333 2cpd_A Apobec-1 stimulating pr 98.6 8.9E-08 3E-12 65.4 6.5 41 9-49 49-91 (99)
334 3r27_A HnRNP L, heterogeneous 98.6 5.6E-08 1.9E-12 66.5 5.2 40 9-48 55-98 (100)
335 2dnl_A Cytoplasmic polyadenyla 98.6 6.3E-08 2.2E-12 68.1 5.5 45 1-45 39-86 (114)
336 1wg1_A KIAA1579 protein, homol 98.6 5.4E-08 1.8E-12 65.1 4.8 39 9-47 38-78 (88)
337 1x4g_A Nucleolysin TIAR; struc 98.6 8.9E-08 3E-12 66.7 5.7 40 11-50 61-102 (109)
338 2dnq_A RNA-binding protein 4B; 98.5 1.2E-07 4.1E-12 63.6 5.7 40 11-50 42-83 (90)
339 2la4_A Nuclear and cytoplasmic 98.5 4.3E-08 1.5E-12 67.2 3.6 39 9-47 61-101 (101)
340 1sjq_A Polypyrimidine tract-bi 98.5 5.3E-08 1.8E-12 67.3 4.0 41 10-50 51-95 (105)
341 2dgu_A Heterogeneous nuclear r 98.5 2.7E-07 9.1E-12 63.5 7.4 42 10-51 44-87 (103)
342 1x4d_A Matrin 3; structural ge 98.5 9.9E-08 3.4E-12 65.7 5.0 41 10-50 51-95 (102)
343 2diu_A KIAA0430 protein; struc 98.5 9.3E-08 3.2E-12 64.1 4.5 39 12-50 47-87 (96)
344 2bz2_A Negative elongation fac 98.5 1.1E-07 3.7E-12 67.7 5.0 41 9-49 71-113 (121)
345 2xnq_A Nuclear polyadenylated 98.5 1.5E-07 5E-12 64.2 5.4 38 10-47 56-95 (97)
346 1x4f_A Matrin 3; structural ge 98.5 1.2E-07 4E-12 66.4 4.9 42 9-50 60-105 (112)
347 2cpj_A Non-POU domain-containi 98.5 9.1E-08 3.1E-12 65.4 4.3 41 9-49 49-91 (99)
348 2e5g_A U6 snRNA-specific termi 98.5 1E-07 3.6E-12 64.4 4.6 45 2-49 39-84 (94)
349 2cq1_A PTB-like protein L; RRM 98.5 1.9E-07 6.4E-12 64.2 5.9 40 10-49 50-93 (101)
350 1wf1_A RNA-binding protein RAL 98.5 1.3E-07 4.5E-12 65.9 4.7 39 10-48 61-101 (110)
351 2dgt_A RNA-binding protein 30; 98.5 3.4E-07 1.2E-11 61.6 6.6 40 10-49 43-84 (92)
352 1wex_A Hypothetical protein (r 98.5 2.5E-07 8.5E-12 63.9 5.8 40 10-49 50-93 (104)
353 1why_A Hypothetical protein ri 98.5 1.8E-07 6E-12 63.7 4.9 38 11-48 53-94 (97)
354 1x4c_A Splicing factor, argini 98.5 1.9E-07 6.5E-12 64.9 5.1 39 12-50 51-96 (108)
355 2hzc_A Splicing factor U2AF 65 98.5 1.8E-07 6E-12 62.2 4.7 36 8-43 50-86 (87)
356 3d2w_A TAR DNA-binding protein 98.5 2.3E-07 8E-12 62.1 5.3 41 9-49 46-86 (89)
357 2jvo_A Nucleolar protein 3; nu 98.5 1.7E-07 5.7E-12 65.2 4.7 39 11-49 65-105 (108)
358 2dnp_A RNA-binding protein 14; 98.5 2.9E-07 1E-11 61.6 5.7 39 11-49 43-83 (90)
359 3s6e_A RNA-binding protein 39; 98.4 1.8E-07 6.3E-12 65.7 4.4 37 10-46 54-92 (114)
360 2kvi_A Nuclear polyadenylated 98.4 1.4E-07 4.7E-12 64.1 3.4 40 10-49 44-85 (96)
361 2ytc_A PRE-mRNA-splicing facto 98.4 2.4E-07 8.1E-12 61.3 4.4 37 9-45 46-85 (85)
362 2e44_A Insulin-like growth fac 98.4 2.7E-07 9.4E-12 62.5 4.7 43 2-48 49-93 (96)
363 1whx_A Hypothetical protein ri 98.4 2.2E-07 7.6E-12 64.9 4.1 39 9-47 44-84 (111)
364 1wf0_A TDP-43, TAR DNA-binding 98.4 3.6E-07 1.2E-11 60.9 5.0 41 10-50 41-81 (88)
365 1sjr_A Polypyrimidine tract-bi 98.4 4.5E-07 1.5E-11 67.5 5.7 42 8-49 81-126 (164)
366 2ad9_A Polypyrimidine tract-bi 98.4 4.1E-07 1.4E-11 64.3 5.1 41 10-50 66-110 (119)
367 2l9w_A U4/U6 snRNA-associated- 98.3 3.1E-06 1.1E-10 57.7 8.4 71 99-175 19-96 (117)
368 2dhx_A Poly (ADP-ribose) polym 98.3 1.7E-05 5.8E-10 53.6 11.9 76 99-182 6-87 (104)
369 2cq2_A Hypothetical protein LO 98.3 9E-07 3.1E-11 62.0 5.1 39 10-48 62-107 (114)
370 3zzy_A Polypyrimidine tract-bi 98.3 1.4E-06 5E-11 62.3 5.9 42 9-50 63-109 (130)
371 3beg_B Splicing factor, argini 98.2 1.5E-06 5E-11 61.1 4.5 37 12-48 52-95 (115)
372 2e5i_A Heterogeneous nuclear r 98.1 4.4E-06 1.5E-10 59.4 6.1 38 12-49 62-104 (124)
373 2dnr_A Synaptojanin-1; RRM dom 98.1 5.4E-06 1.9E-10 55.0 5.2 34 14-47 52-86 (91)
374 1ufw_A Synaptojanin 2; RNP dom 97.7 2.4E-05 8.3E-10 52.2 3.4 33 14-46 61-94 (95)
375 1wey_A Calcipressin 1; structu 97.5 0.00045 1.5E-08 46.8 6.9 75 100-180 4-85 (104)
376 1whv_A Poly(A)-specific ribonu 97.4 0.00091 3.1E-08 44.6 7.6 55 98-161 13-67 (100)
377 3tht_A Alkylated DNA repair pr 97.3 0.00019 6.7E-09 59.8 5.0 36 10-45 55-97 (345)
378 3ctr_A Poly(A)-specific ribonu 96.8 0.0015 5.2E-08 43.7 4.3 52 101-161 6-57 (101)
379 2f3j_A RNA and export factor b 96.7 0.00092 3.1E-08 50.4 3.2 31 6-39 124-154 (177)
380 1uw4_A UPF3X; nonsense mediate 96.6 0.0087 3E-07 39.7 7.0 60 102-161 2-63 (91)
381 1wwh_A Nucleoporin 35, nucleop 96.6 0.0064 2.2E-07 42.3 6.5 72 98-176 21-94 (119)
382 3u1l_A PRE-mRNA-splicing facto 96.5 0.0016 5.4E-08 51.5 3.5 26 9-34 177-204 (240)
383 2dhx_A Poly (ADP-ribose) polym 96.1 0.0085 2.9E-07 40.4 4.8 36 12-47 48-84 (104)
384 3pq1_A Poly(A) RNA polymerase; 96.0 0.0036 1.2E-07 54.1 3.1 55 102-162 54-108 (464)
385 2i2y_A Fusion protein consists 96.0 0.0043 1.5E-07 45.0 3.1 28 9-39 108-135 (150)
386 2l08_A Regulator of nonsense t 95.4 0.022 7.4E-07 38.1 4.5 63 100-162 8-72 (97)
387 2l9w_A U4/U6 snRNA-associated- 95.1 0.025 8.5E-07 38.6 4.1 31 13-43 64-96 (117)
388 3p3d_A Nucleoporin 53; structu 95.0 0.039 1.3E-06 38.9 5.0 76 101-177 7-97 (132)
389 1owx_A Lupus LA protein, SS-B, 94.8 0.042 1.4E-06 38.5 4.6 34 13-46 57-95 (121)
390 3d45_A Poly(A)-specific ribonu 88.3 1.4 4.8E-05 38.5 7.5 54 100-162 439-492 (507)
391 1wey_A Calcipressin 1; structu 82.0 1 3.5E-05 30.3 2.8 34 14-47 49-84 (104)
392 3p3d_A Nucleoporin 53; structu 77.3 3 0.0001 29.3 4.1 35 11-45 62-97 (132)
393 1wwh_A Nucleoporin 35, nucleop 71.9 4.3 0.00015 28.0 3.7 36 10-45 58-95 (119)
394 4eyt_A Telomerase associated p 64.9 25 0.00087 22.7 8.6 71 100-178 11-90 (129)
395 4fdd_B RNA-binding protein FUS 40.5 24 0.00081 17.4 2.2 9 229-237 21-29 (29)
396 2pk2_A Cyclin-T1, protein TAT; 40.2 6 0.0002 32.8 0.0 11 112-122 228-238 (358)
397 3ts2_A Protein LIN-28 homolog 35.9 7.3 0.00025 27.9 -0.1 28 116-151 2-29 (148)
398 4e8u_A Putative uncharacterize 35.4 80 0.0027 23.1 5.4 48 102-152 13-71 (172)
399 3ulj_A LIN28B, DNA-binding pro 24.7 26 0.00089 22.7 1.1 10 9-18 18-27 (90)
400 2k5n_A Putative cold-shock pro 24.6 32 0.0011 21.3 1.4 12 9-20 12-23 (74)
401 3cam_A Cold-shock domain famil 23.8 31 0.0011 20.8 1.3 11 9-19 11-21 (67)
402 2kcm_A Cold shock domain famil 23.4 32 0.0011 21.3 1.3 12 9-20 10-21 (74)
403 2g0c_A ATP-dependent RNA helic 23.2 47 0.0016 20.1 2.1 33 12-45 41-75 (76)
404 1c9o_A CSPB, cold-shock protei 23.1 33 0.0011 20.6 1.3 11 9-19 11-21 (66)
405 3a0j_A Cold shock protein; OB- 22.1 35 0.0012 21.0 1.3 11 9-19 11-21 (73)
406 1h95_A CSD, Y-box binding prot 21.7 39 0.0013 21.1 1.4 11 9-19 18-28 (79)
407 1g6p_A Cold shock protein TMCS 21.6 36 0.0012 20.4 1.3 11 9-19 10-20 (66)
408 3fut_A Dimethyladenosine trans 21.5 84 0.0029 24.6 3.7 29 102-131 111-139 (271)
409 1fme_A FSD-EY peptide; beta-BE 20.5 60 0.002 15.3 1.6 12 114-125 14-25 (28)
410 3i2z_B RNA chaperone, negative 20.1 41 0.0014 20.5 1.3 12 9-20 15-26 (71)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=3.8e-29 Score=194.67 Aligned_cols=142 Identities=30% Similarity=0.565 Sum_probs=116.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (237)
|++|+.|++++|||||+|.+.++|++|| .+++.|.|+.|.|.++.+......+.
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~------------------------- 99 (196)
T 1l3k_A 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG------------------------- 99 (196)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC---------------------------------
T ss_pred EEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccc-------------------------
Confidence 4678899999999999999999999999 67889999999999987654322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHH
Q 026534 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a 159 (237)
......+|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|.+|
T Consensus 100 -----------------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 100 -----------------AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp --------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred -----------------cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 134468999999999999999999999999999999999988999999999999999999999
Q ss_pred Hhc-CCccCCeEEEEEeccCCCCCCC
Q 026534 160 SRR-SHEICGQQVAIDSATPLDDAGP 184 (237)
Q Consensus 160 ~~~-~~~~~g~~l~v~~a~~~~~~~~ 184 (237)
|.. .+.|.|+.|.|.++.++.+...
T Consensus 163 ~~~~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 163 VIQKYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHCSCCEETTEECEEEECC-------
T ss_pred HHhCCcEECCEEEEEEecCChhHhcc
Confidence 964 4599999999999999877654
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.7e-28 Score=186.29 Aligned_cols=132 Identities=30% Similarity=0.577 Sum_probs=118.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHHhccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (237)
|++|+.||+++|||||+|.+.++|++||.+++.|+|+.|.|.++.++..
T Consensus 35 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~------------------------------- 83 (167)
T 2cjk_A 35 IMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE------------------------------- 83 (167)
T ss_dssp CCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHH-------------------------------
T ss_pred EEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhh-------------------------------
Confidence 5789999999999999999999999999878899999999988865421
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHH
Q 026534 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~ 160 (237)
.....+|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+
T Consensus 84 -----------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 84 -----------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp -----------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH
T ss_pred -----------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 112468999999999999999999999999999999999889999999999999999999999
Q ss_pred hc-CCccCCeEEEEEeccCCC
Q 026534 161 RR-SHEICGQQVAIDSATPLD 180 (237)
Q Consensus 161 ~~-~~~~~g~~l~v~~a~~~~ 180 (237)
.. ...|.|+.|.|.++.|++
T Consensus 147 ~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 147 QNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HCSEECSSSSCEEEEECCCCC
T ss_pred hCCCEEeCCeEEEEeecCCCC
Confidence 72 238999999999999864
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=8e-27 Score=177.06 Aligned_cols=128 Identities=20% Similarity=0.336 Sum_probs=114.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+.|++++|||||+|.+.++|++|+ +++..+.|++|.|.++.+...
T Consensus 35 i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------------------- 85 (168)
T 1b7f_A 35 IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE----------------------------- 85 (168)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS-----------------------------
T ss_pred EEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc-----------------------------
Confidence 4678889999999999999999999999 689999999999999876532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
.....+|||+|||..+++++|+++|++||.|..+.++.+..++.++++|||+|.+.++|.+
T Consensus 86 -------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 86 -------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp -------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred -------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 2345799999999999999999999999999999999998889999999999999999999
Q ss_pred HHhcCC--ccCC--eEEEEEec
Q 026534 159 VSRRSH--EICG--QQVAIDSA 176 (237)
Q Consensus 159 a~~~~~--~~~g--~~l~v~~a 176 (237)
|+..++ .+.| ++|+|.+|
T Consensus 147 A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 147 AISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCEecCCCeEEEEEeC
Confidence 997544 7877 99999886
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=1.1e-26 Score=183.35 Aligned_cols=147 Identities=20% Similarity=0.404 Sum_probs=119.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|.|+.|.|.++......... ......
T Consensus 60 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~------------------~~~~~~- 120 (216)
T 2qfj_A 60 MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI------------------IDQLAE- 120 (216)
T ss_dssp ECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHH------------------HHHHHH-
T ss_pred EeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchh------------------hhhhhc-
Confidence 4678889999999999999999999999 6899999999999887654321100 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
......+|||+|||.++++++|+++|++||.|+.|.|+.+..++++++||||+|.+.++|.+
T Consensus 121 ------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 121 ------------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp ------------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ------------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 02346899999999999999999999999999999999998899999999999999999999
Q ss_pred HHhc--CCccCCeEEEEEeccCCCCCCC
Q 026534 159 VSRR--SHEICGQQVAIDSATPLDDAGP 184 (237)
Q Consensus 159 a~~~--~~~~~g~~l~v~~a~~~~~~~~ 184 (237)
|+.. ...|.|+.|.|.++.++....+
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSSTTS
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCCCC
Confidence 9975 4499999999999998755543
No 5
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=1.2e-26 Score=177.46 Aligned_cols=129 Identities=18% Similarity=0.331 Sum_probs=112.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (237)
+++|..++++||||||+|.+.++|++|| +++..|.|+.|.|.++.++....
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~---------------------------- 95 (175)
T 1fje_B 44 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKK---------------------------- 95 (175)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCST----------------------------
T ss_pred EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccc----------------------------
Confidence 4677889999999999999999999999 88999999999999987653211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHH
Q 026534 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a 159 (237)
.....+|||+|||.++++++|+++|++||.|..+ ..++.+++||||+|.+.++|.+|
T Consensus 96 ------------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A 152 (175)
T 1fje_B 96 ------------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKN 152 (175)
T ss_dssp ------------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHH
T ss_pred ------------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHH
Confidence 2346799999999999999999999999988655 46778999999999999999999
Q ss_pred HhcCC--ccCCeEEEEEeccCCC
Q 026534 160 SRRSH--EICGQQVAIDSATPLD 180 (237)
Q Consensus 160 ~~~~~--~~~g~~l~v~~a~~~~ 180 (237)
+..++ .|.|+.|.|.++.|+.
T Consensus 153 ~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 153 LEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHhCCCEECCeEEEEEecCCCC
Confidence 97554 9999999999998763
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=4.2e-27 Score=185.94 Aligned_cols=134 Identities=20% Similarity=0.335 Sum_probs=116.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+.|++++|||||+|.+.++|++|| +++..+.|+.|++.++.......
T Consensus 47 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~--------------------------- 99 (213)
T 4f02_A 47 VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR--------------------------- 99 (213)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH---------------------------
T ss_pred EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc---------------------------
Confidence 4689999999999999999999999999 68899999999998886543211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
.....+|||+|||+++++++|+++|++||.|+.|.|+.+. +.+++||||+|.+.++|++
T Consensus 100 -------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~ 158 (213)
T 4f02_A 100 -------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAER 158 (213)
T ss_dssp -------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHH
T ss_pred -------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHH
Confidence 1224689999999999999999999999999999999874 3379999999999999999
Q ss_pred HHhc--CCccCCeEEEEEeccCCCCC
Q 026534 159 VSRR--SHEICGQQVAIDSATPLDDA 182 (237)
Q Consensus 159 a~~~--~~~~~g~~l~v~~a~~~~~~ 182 (237)
||.. ...|.|+.|.|.++.++.++
T Consensus 159 Ai~~lng~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 159 AIEKMNGMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp HHHHHTTCEETTEECEEEECCCHHHH
T ss_pred HHHHhCCCEECCEEEEEEEcCCCccc
Confidence 9975 45999999999999886543
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=1.8e-26 Score=174.77 Aligned_cols=128 Identities=23% Similarity=0.445 Sum_probs=113.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+.|++++|||||+|.+.++|++|+ +++..+.|+.|.|.++.+...
T Consensus 34 ~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------------------- 84 (167)
T 1fxl_A 34 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA----------------------------- 84 (167)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-----------------------------
T ss_pred EEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-----------------------------
Confidence 3578889999999999999999999999 689999999999999876432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~ 158 (237)
.....+|||+|||..+++++|+++|++||.|..+.++.+..++.++++|||+|.+.++|.+
T Consensus 85 -------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 85 -------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp -------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred -------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 1235789999999999999999999999999999999998889999999999999999999
Q ss_pred HHhcC--CccCCeE--EEEEec
Q 026534 159 VSRRS--HEICGQQ--VAIDSA 176 (237)
Q Consensus 159 a~~~~--~~~~g~~--l~v~~a 176 (237)
|+..+ ..|.|+. |.|.+|
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 99754 4888864 888875
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=2.1e-26 Score=179.34 Aligned_cols=152 Identities=15% Similarity=0.218 Sum_probs=120.7
Q ss_pred CCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCC
Q 026534 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP 81 (237)
Q Consensus 3 ~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (237)
.+..+++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.+.............
T Consensus 43 ~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~---------------------- 100 (198)
T 2yh0_A 43 LAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSV---------------------- 100 (198)
T ss_dssp EEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSC----------------------
T ss_pred EEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcC----------------------
Confidence 34456789999999999999999999 7899999999999988765432211000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 82 TLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
.. .............+|||+|||+.+++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++|+.
T Consensus 101 ---~~---~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 101 ---YV---PGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp ---CC---TTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHH
T ss_pred ---CC---CCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 00 000111124567899999999999999999999999999999999998899999999999999999999997
Q ss_pred c--CCccCCeEEEEEeccCCCCC
Q 026534 162 R--SHEICGQQVAIDSATPLDDA 182 (237)
Q Consensus 162 ~--~~~~~g~~l~v~~a~~~~~~ 182 (237)
. ...|.|+.|.|.++.++...
T Consensus 175 ~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp HHTTCEETTEECEEEESCCCCCC
T ss_pred HcCCCEECCEEEEEEECCCCCCC
Confidence 4 45899999999999887543
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.6e-26 Score=172.90 Aligned_cols=130 Identities=21% Similarity=0.340 Sum_probs=114.5
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (237)
++|+. ++++|||||+|.+.++|++|+ +++..+.|+.|.|.++.+....
T Consensus 33 ~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~----------------------------- 82 (166)
T 3md3_A 33 MIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQS----------------------------- 82 (166)
T ss_dssp ECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCC-----------------------------
T ss_pred EECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCC-----------------------------
Confidence 45654 789999999999999999999 6899999999999998754321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHH
Q 026534 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a 159 (237)
......+|||+|||..+++++|+++|++||.|..+.++.+..++.++++|||+|.+.++|.+|
T Consensus 83 -----------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 145 (166)
T 3md3_A 83 -----------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 145 (166)
T ss_dssp -----------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred -----------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 134567999999999999999999999999999999999988999999999999999999999
Q ss_pred Hhc--CCccCCeEEEEEeccC
Q 026534 160 SRR--SHEICGQQVAIDSATP 178 (237)
Q Consensus 160 ~~~--~~~~~g~~l~v~~a~~ 178 (237)
+.. ...|.|+.|.|.+|++
T Consensus 146 ~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 146 MDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHTTCEETTEECEEEESCC
T ss_pred HHHhCCCccCCcEEEEEecCC
Confidence 974 4589999999999863
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=2.4e-26 Score=175.13 Aligned_cols=125 Identities=18% Similarity=0.366 Sum_probs=111.1
Q ss_pred CCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCC
Q 026534 5 QGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (237)
Q Consensus 5 ~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 83 (237)
..+++++|||||+|.+.++|++|+ ++++.|.|+.|.|.++.+...
T Consensus 45 ~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~---------------------------------- 90 (172)
T 2g4b_A 45 VQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP---------------------------------- 90 (172)
T ss_dssp EEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC----------------------------------
T ss_pred eEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC----------------------------------
Confidence 345788999999999999999999 789999999999988754321
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-
Q 026534 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR- 162 (237)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~- 162 (237)
.....+|||+|||..+++++|+++|++||.|..|.++.+..++.+++||||+|.+.++|.+|+..
T Consensus 91 --------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 91 --------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp --------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred --------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 22367899999999999999999999999999999999988999999999999999999999975
Q ss_pred -CCccCCeEEEEEecc
Q 026534 163 -SHEICGQQVAIDSAT 177 (237)
Q Consensus 163 -~~~~~g~~l~v~~a~ 177 (237)
...|.|+.|.|++|.
T Consensus 157 ~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCeEEEEEeCC
Confidence 458999999999873
No 11
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=5e-25 Score=166.05 Aligned_cols=139 Identities=21% Similarity=0.281 Sum_probs=104.0
Q ss_pred CcccEEEEEecCHHHHHHHH--hcc-ceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~-~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 85 (237)
+++|||||+|.+.++|++|+ +++ ..+.+.. .+..............
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------------------------ 59 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEW-TYDDATKTFTVTEGSH------------------------------ 59 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEE-EEETTTTEEEEECCCC------------------------------
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcc-cccCcccccccccccc------------------------------
Confidence 79999999999999999999 332 2333332 2221111100000000
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-
Q 026534 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH- 164 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~- 164 (237)
............+|||+|||+++++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|+.||..++
T Consensus 60 -----~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 134 (158)
T 2kn4_A 60 -----HHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 134 (158)
T ss_dssp -----CSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT
T ss_pred -----ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 00011113457899999999999999999999999999999999998899999999999999999999997655
Q ss_pred -ccCCeEEEEEeccCCCCCC
Q 026534 165 -EICGQQVAIDSATPLDDAG 183 (237)
Q Consensus 165 -~~~g~~l~v~~a~~~~~~~ 183 (237)
.|.|+.|.|.++.++.+..
T Consensus 135 ~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 135 AVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp EESSSSEEEEEEECCSSCCC
T ss_pred CEECCeEEEEEECCCCCCCC
Confidence 8999999999998775544
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=8.5e-25 Score=180.48 Aligned_cols=137 Identities=20% Similarity=0.351 Sum_probs=110.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+. +.++|||||+|.+.++|.+|+ +++..|.|+.|.|.++.+.......
T Consensus 150 i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~------------------------- 203 (292)
T 2ghp_A 150 LPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT------------------------- 203 (292)
T ss_dssp CC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------------------
T ss_pred EEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-------------------------
Confidence 355655 789999999999999999999 7899999999999999876442211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCcEEEEEeecCCC-CCCCcceEEEEEcCHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPK-RTGHRGFGFVTFAEEVVA 156 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~-~~~~~l~~~F~~~G~i~~~~v~~~~~-~~~~~g~afv~f~~~~~a 156 (237)
........+|||+|||+. +++++|+++|++||.|..|.|+.+.. |+.+++||||+|.+.++|
T Consensus 204 ----------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A 267 (292)
T 2ghp_A 204 ----------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 267 (292)
T ss_dssp -------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHH
T ss_pred ----------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHH
Confidence 001445789999999999 99999999999999999999999866 588999999999999999
Q ss_pred HHHHhcCC--ccCCeEEEEEeccCCC
Q 026534 157 DRVSRRSH--EICGQQVAIDSATPLD 180 (237)
Q Consensus 157 ~~a~~~~~--~~~g~~l~v~~a~~~~ 180 (237)
.+|+ .++ .|.|+.|.|.++.+++
T Consensus 268 ~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 268 ERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHHH-HhcCCEECCcEEEEEEecCCC
Confidence 9999 665 8999999999999864
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=6e-25 Score=180.69 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=119.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhcc
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (237)
|++|+.||+++|||||+|.+.++|.+|+ +++..|.|+.|.|.++.+.....
T Consensus 127 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~--------------------------- 179 (284)
T 3smz_A 127 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP--------------------------- 179 (284)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT---------------------------
T ss_pred EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc---------------------------
Confidence 3578889999999999999999999999 78999999999999987643211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHH
Q 026534 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEA-TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD 157 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~-~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~ 157 (237)
......+|||+|||+.+ ++++|+++|+.||.|..|.|+.+. ++.++++|||+|.+.++|.
T Consensus 180 ------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 180 ------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAE 240 (284)
T ss_dssp ------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHH
T ss_pred ------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHH
Confidence 12456899999999995 999999999999999999999984 7889999999999999999
Q ss_pred HHHhc--CCccCCeEEEEEeccCCCCC
Q 026534 158 RVSRR--SHEICGQQVAIDSATPLDDA 182 (237)
Q Consensus 158 ~a~~~--~~~~~g~~l~v~~a~~~~~~ 182 (237)
+|+.. ...|.|+.|.|.++.++..+
T Consensus 241 ~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 241 EAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp HHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred HHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 99974 45999999999999987654
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=1.1e-24 Score=166.11 Aligned_cols=129 Identities=20% Similarity=0.392 Sum_probs=106.7
Q ss_pred CCCCCCCC--CcccEEEEEecCHHHHHHHH--hccceeC---CcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHh
Q 026534 1 MPKDQGSK--AHRGIGFITFASADSVENLM--VDTHELG---GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAAT 73 (237)
Q Consensus 1 ~~~d~~tg--~skG~aFV~F~~~~~A~~Ai--~~~~~~~---gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (237)
|++|+.++ +++|||||+|.+.++|++|+ +++..+. ++.+.+.++.+....
T Consensus 35 i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 91 (175)
T 3nmr_A 35 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN----------------------- 91 (175)
T ss_dssp EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS-----------------------
T ss_pred EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc-----------------------
Confidence 35677776 99999999999999999999 6766654 577777776543221
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCH
Q 026534 74 RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE 153 (237)
Q Consensus 74 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~ 153 (237)
.....+|||+|||+++++++|+++|++||.|..|.|+.+ .++.+++||||+|.+.
T Consensus 92 ------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g~~~g~afV~f~~~ 146 (175)
T 3nmr_A 92 ------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTR 146 (175)
T ss_dssp ------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTSCEEEEEEEEESSH
T ss_pred ------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-CCCCEEEEEEEEECCH
Confidence 234578999999999999999999999999999999998 4688999999999999
Q ss_pred HHHHHHHhcCC--ccC---CeEEEEEecc
Q 026534 154 VVADRVSRRSH--EIC---GQQVAIDSAT 177 (237)
Q Consensus 154 ~~a~~a~~~~~--~~~---g~~l~v~~a~ 177 (237)
++|.+|+..++ .+. +++|.|.+|.
T Consensus 147 ~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 147 AMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999997544 444 4999999873
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=5.3e-23 Score=168.88 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccC-CeEEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC-GQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~-g~~l~v~ 174 (237)
....++|||+|||..+++++|+++|++||.|+.|.|+.+ .++||||+|.+.++|.+||..++ .|. |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG-----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC-----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 446789999999999999999999999999999999876 35899999999999999997655 788 9999999
Q ss_pred ecc
Q 026534 175 SAT 177 (237)
Q Consensus 175 ~a~ 177 (237)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.90 E-value=1.2e-23 Score=164.96 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=102.7
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (237)
+||||||+|.+.++|++|| +++..|.|+.|.|.++..+..........................+....
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~--------- 111 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTP--------- 111 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSH---------
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCc---------
Confidence 5899999999999999999 89999999999999986543211110000000000000000000000000
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcE--EEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-
Q 026534 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH- 164 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i--~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~- 164 (237)
..........++.+|||+|||+++++++|+++|++||.| ..|+|+.+. +.++++|||+|.+.++|.+||..++
T Consensus 112 --~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng 187 (205)
T 3tyt_A 112 --EQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNH 187 (205)
T ss_dssp --HHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTT
T ss_pred --ccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 000000113457899999999999999999999999998 889998874 4467999999999999999997554
Q ss_pred -ccCCe----EEEEEec
Q 026534 165 -EICGQ----QVAIDSA 176 (237)
Q Consensus 165 -~~~g~----~l~v~~a 176 (237)
+|.+. ++.|+++
T Consensus 188 ~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 188 YQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CEECCSSSSSCEECEEE
T ss_pred CCccCCCCCcceEEEec
Confidence 66665 5666654
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=7.6e-23 Score=163.21 Aligned_cols=151 Identities=13% Similarity=0.216 Sum_probs=106.9
Q ss_pred ccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCCC
Q 026534 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 88 (237)
+|||||+|.+.++|++|| +++..|.|+.|.|.++.+............. .....+ ..........
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~---~~~~~~----------~~~~~~~~~~ 138 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQ---GLTKDY----------GNSPLHRFKK 138 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTT---TTEEEC----------TTCSSCCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCcccccccc---cccccc----------ccCcccccCC
Confidence 899999999999999999 7899999999999998765322111000000 000000 0000000000
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--Cc
Q 026534 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HE 165 (237)
Q Consensus 89 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~ 165 (237)
...........+..+|||+|||..+++++|+++|++|| .|..|.|+.+ .+++|||+|.+.++|.+|+..+ ..
T Consensus 139 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~ 213 (229)
T 2adc_A 139 PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHD 213 (229)
T ss_dssp TTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCB
T ss_pred ccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCc
Confidence 00000011234578999999999999999999999999 9999999764 4789999999999999999754 48
Q ss_pred cC-CeEEEEEeccCC
Q 026534 166 IC-GQQVAIDSATPL 179 (237)
Q Consensus 166 ~~-g~~l~v~~a~~~ 179 (237)
|. |+.|.|.+++++
T Consensus 214 ~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 214 LGENHHLRVSFSKST 228 (229)
T ss_dssp SSSSCBCEEEECSSC
T ss_pred cCCCCeEEEEEecCC
Confidence 88 999999999875
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=158.03 Aligned_cols=151 Identities=13% Similarity=0.185 Sum_probs=107.5
Q ss_pred ccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCCCCC
Q 026534 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 88 (237)
+|||||+|.+.++|++|| +++..|.|+.|.|.++.+.............. ...........+...
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~~~----------- 107 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQG--LTKDYGNSPLHRFKK----------- 107 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSS--CEEESSCCCTTSSSS-----------
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCcccc--ccccccCCchhhccC-----------
Confidence 899999999999999999 78999999999999987654322111000000 000000000000000
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--Cc
Q 026534 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HE 165 (237)
Q Consensus 89 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~ 165 (237)
...........+..+|||+|||..+++++|+++|++|| .|..|.|+.+ .+++|||+|.+.++|.+|+..+ ..
T Consensus 108 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~ 182 (198)
T 1qm9_A 108 PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHD 182 (198)
T ss_dssp CCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSC
T ss_pred ccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCc
Confidence 00001111234579999999999999999999999999 9999999775 4789999999999999999754 48
Q ss_pred cC-CeEEEEEeccCC
Q 026534 166 IC-GQQVAIDSATPL 179 (237)
Q Consensus 166 ~~-g~~l~v~~a~~~ 179 (237)
+. |+.|+|.+++++
T Consensus 183 ~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 183 LGENHHLRVSFSKST 197 (198)
T ss_dssp CSSCCSCCEEEECCC
T ss_pred cCCCCeEEEEeeccc
Confidence 88 999999999874
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.89 E-value=1.7e-22 Score=166.05 Aligned_cols=120 Identities=14% Similarity=0.289 Sum_probs=109.3
Q ss_pred CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCC
Q 026534 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 85 (237)
++++|||||+|.+.++|++|+ +++..|.|++|.|.++.
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---------------------------------------- 93 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---------------------------------------- 93 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----------------------------------------
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----------------------------------------
Confidence 578999999999999999999 68999999999998743
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--C
Q 026534 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--S 163 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~ 163 (237)
...+|||+|||+++++++|+++|+.||.|..|.|+.+..++.+++||||+|.+.++|..|+.. .
T Consensus 94 --------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 94 --------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp --------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred --------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 136899999999999999999999999999999999988999999999999999999999964 4
Q ss_pred CccCCeEEEEEeccCCCC
Q 026534 164 HEICGQQVAIDSATPLDD 181 (237)
Q Consensus 164 ~~~~g~~l~v~~a~~~~~ 181 (237)
..+.|+.|.|.++.++..
T Consensus 160 ~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 160 KPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp CEETTEECEEEECCGGGC
T ss_pred CEeCCcEEEEEECCCCCC
Confidence 589999999999987654
No 20
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=1.1e-22 Score=151.95 Aligned_cols=136 Identities=21% Similarity=0.339 Sum_probs=108.7
Q ss_pred CCCcccEEEEEecCHHHHHHHH--h-ccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCC
Q 026534 7 SKAHRGIGFITFASADSVENLM--V-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~A~~Ai--~-~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 83 (237)
....+|+++|+|.+.++|++|+ + ++..++| .|.+.++..+.........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~--------------------------- 60 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH--------------------------- 60 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS---------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc---------------------------
Confidence 3478999999999999999999 6 8899999 9999887654321110000
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-
Q 026534 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR- 162 (237)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~- 162 (237)
.............++|||+|||+++++++|+++|++||.|..|.|+.+ +++||||+|.+.++|+.||..
T Consensus 61 -----~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l 130 (150)
T 2i2y_A 61 -----HHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL 130 (150)
T ss_dssp -----CCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHH
T ss_pred -----ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHc
Confidence 000011112456789999999999999999999999999999999887 689999999999999999974
Q ss_pred -CCccCCeEEEEEeccCCC
Q 026534 163 -SHEICGQQVAIDSATPLD 180 (237)
Q Consensus 163 -~~~~~g~~l~v~~a~~~~ 180 (237)
...|.|+.|+|.++.++.
T Consensus 131 ~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 131 DGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SSSCSSSSCCEEEECCCCC
T ss_pred CCCEECCeEEEEEEcCCCC
Confidence 458999999999998764
No 21
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.88 E-value=2.2e-22 Score=163.67 Aligned_cols=120 Identities=28% Similarity=0.369 Sum_probs=107.0
Q ss_pred CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCCCCCCC
Q 026534 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 85 (237)
.+++|||||+|.+.++|++|| +++..|.|+.|.|.++.+
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--------------------------------------- 95 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--------------------------------------- 95 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC---------------------------------------
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc---------------------------------------
Confidence 467999999999999999999 789999999999998863
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-
Q 026534 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH- 164 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~- 164 (237)
..+|||+|||..+++++|+++|+.||.|..|.|+.+ .++++++||||+|.+.++|.+||..++
T Consensus 96 ---------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 96 ---------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp ---------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ---------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 358999999999999999999999999999999999 689999999999999999999987542
Q ss_pred --c---cCCeEEEEEeccCCCCC
Q 026534 165 --E---ICGQQVAIDSATPLDDA 182 (237)
Q Consensus 165 --~---~~g~~l~v~~a~~~~~~ 182 (237)
. ..+++|.|.++.+....
T Consensus 160 ~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 160 GAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp SCEESSSSCCBCEEEECCCEESS
T ss_pred CeEEecCCCceEEEeeccccCcc
Confidence 2 34999999999876544
No 22
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.87 E-value=5e-22 Score=163.84 Aligned_cols=124 Identities=15% Similarity=0.263 Sum_probs=102.0
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCCCccccCCCCCCCCccchhhHHhhhhccCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (237)
++|+.+ ++|||||+|.+.++|++|| +++..|.|+.|.|.++.
T Consensus 74 ~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~----------------------------------- 116 (292)
T 2ghp_A 74 ADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT----------------------------------- 116 (292)
T ss_dssp EECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC-----------------------------------
T ss_pred EECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC-----------------------------------
Confidence 345543 6899999999999999999 88999999999998752
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHH
Q 026534 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a 159 (237)
..+|||+|||+.+++++|+++|.+|| .|..|.|+.+.. +.+++||||+|.+.++|..|
T Consensus 117 --------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 117 --------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp --------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHH
T ss_pred --------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHH
Confidence 36899999999999999999999999 999999998854 77899999999999999999
Q ss_pred Hhc--CCccCCeEEEEEeccCCCCCC
Q 026534 160 SRR--SHEICGQQVAIDSATPLDDAG 183 (237)
Q Consensus 160 ~~~--~~~~~g~~l~v~~a~~~~~~~ 183 (237)
+.. ...|.|+.|.|.++.++....
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~~~~~~~ 201 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSNPLEKSK 201 (292)
T ss_dssp HHHHTTCEETTEECEEEECCCC----
T ss_pred HHHhCCCEeCCcEEEEEECCCCcccc
Confidence 974 458999999999998765543
No 23
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=8.2e-21 Score=142.64 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|+.|.|+.+..++.+++||||+|.+.++|++||..++ .|.++.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999997544 89999999999
Q ss_pred ccCCCCCC
Q 026534 176 ATPLDDAG 183 (237)
Q Consensus 176 a~~~~~~~ 183 (237)
+.++....
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 98765543
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=132.62 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
...+++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||.. ...|.|+.|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999965 4599999999999
Q ss_pred ccC
Q 026534 176 ATP 178 (237)
Q Consensus 176 a~~ 178 (237)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 986
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=130.26 Aligned_cols=82 Identities=28% Similarity=0.458 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC-C--ccCCeEEEEEec
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-H--EICGQQVAIDSA 176 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~-~--~~~g~~l~v~~a 176 (237)
+++|||+|||+++|+++|+++|++|| .|..|+|++++.++.++|||||+|.+.++|++||+.+ + .|.|++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999754 3 689999999999
Q ss_pred cCCCCC
Q 026534 177 TPLDDA 182 (237)
Q Consensus 177 ~~~~~~ 182 (237)
.|++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987654
No 26
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.2e-20 Score=127.56 Aligned_cols=87 Identities=32% Similarity=0.467 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCCccCCeEEEEEecc
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSAT 177 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~g~~l~v~~a~ 177 (237)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+..++++++||||+|.+.++|++||.+++.|.|+.|.|.++.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecC
Confidence 55678999999999999999999999999999999999988999999999999999999999998889999999999999
Q ss_pred CCCCCCC
Q 026534 178 PLDDAGP 184 (237)
Q Consensus 178 ~~~~~~~ 184 (237)
++.....
T Consensus 92 ~~~~~~~ 98 (103)
T 2cqg_A 92 SKQSQDS 98 (103)
T ss_dssp TTCCCCC
T ss_pred CCCcCCC
Confidence 8766543
No 27
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=125.70 Aligned_cols=87 Identities=34% Similarity=0.681 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~a 176 (237)
....++|||+|||.++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++||. +...|.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5567899999999999999999999999999999999998899999999999999999999997 445899999999999
Q ss_pred cCCCCCCC
Q 026534 177 TPLDDAGP 184 (237)
Q Consensus 177 ~~~~~~~~ 184 (237)
.++....+
T Consensus 87 ~~~~~~~~ 94 (99)
T 2dgs_A 87 EPRDSKSS 94 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCcccCC
Confidence 98776654
No 28
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.4e-19 Score=126.52 Aligned_cols=86 Identities=34% Similarity=0.536 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-ccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~g~~l~v~~a 176 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++||..++ .|.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 5667999999999999999999999999999999999999999999999999999999999997655 899999999999
Q ss_pred cCCCCCC
Q 026534 177 TPLDDAG 183 (237)
Q Consensus 177 ~~~~~~~ 183 (237)
.+.....
T Consensus 94 ~~~~~~~ 100 (116)
T 2cqd_A 94 YLGAKPR 100 (116)
T ss_dssp TTTCCCC
T ss_pred ccCCCcc
Confidence 8764443
No 29
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=124.80 Aligned_cols=87 Identities=24% Similarity=0.363 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|+.||..++ .|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999997655 89999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++.....
T Consensus 85 a~~~~~~~~ 93 (99)
T 1whw_A 85 STIKKEASQ 93 (99)
T ss_dssp CCCCSTTCC
T ss_pred cCCCccccc
Confidence 998876543
No 30
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-19 Score=125.62 Aligned_cols=88 Identities=23% Similarity=0.433 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
......+|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||..++ .|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35667899999999999999999999999999999999998899999999999999999999997544 8999999999
Q ss_pred eccCCCCCCC
Q 026534 175 SATPLDDAGP 184 (237)
Q Consensus 175 ~a~~~~~~~~ 184 (237)
++.++.....
T Consensus 91 ~a~~~~~~~~ 100 (105)
T 1x5u_A 91 KASAHNKNLS 100 (105)
T ss_dssp ETTTTSCCCC
T ss_pred ECCCCCcCCC
Confidence 9998766543
No 31
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=2.3e-20 Score=136.77 Aligned_cols=86 Identities=26% Similarity=0.430 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
.....+|||+|||+++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++||..++ .|.|+.|+|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998899999999999999999999997544 89999999999
Q ss_pred ccCCCCCC
Q 026534 176 ATPLDDAG 183 (237)
Q Consensus 176 a~~~~~~~ 183 (237)
++++....
T Consensus 124 a~~~~~~~ 131 (135)
T 2lea_A 124 ARYGRPPD 131 (135)
T ss_dssp CCCCCCCT
T ss_pred CCCCCCCc
Confidence 98765554
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=126.92 Aligned_cols=89 Identities=26% Similarity=0.449 Sum_probs=80.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEE
Q 026534 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAI 173 (237)
Q Consensus 96 ~~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v 173 (237)
+......+|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||.. ...|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456679999999999999999999999999999999999988999999999999999999999974 45899999999
Q ss_pred EeccCCCCCCC
Q 026534 174 DSATPLDDAGP 184 (237)
Q Consensus 174 ~~a~~~~~~~~ 184 (237)
.++.+......
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2dnm_A 88 QVARYGRRDLS 98 (103)
T ss_dssp EECSSCCSCCC
T ss_pred EECCcCCCCCC
Confidence 99987655543
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=126.20 Aligned_cols=87 Identities=25% Similarity=0.424 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||..++ .|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 5667999999999999999999999999999999999998899999999999999999999997554 89999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++....+
T Consensus 92 a~~~~~~~~ 100 (103)
T 2cq0_A 92 AKPSTNSGP 100 (103)
T ss_dssp SSCCCCSCC
T ss_pred CCCCCCCCC
Confidence 998766654
No 34
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=123.64 Aligned_cols=85 Identities=28% Similarity=0.513 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEec
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 176 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~a 176 (237)
...++|||+|||.++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++||.. ...|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4578999999999999999999999999999999999988999999999999999999999974 45899999999999
Q ss_pred cCCCCCC
Q 026534 177 TPLDDAG 183 (237)
Q Consensus 177 ~~~~~~~ 183 (237)
.++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8776553
No 35
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-19 Score=131.40 Aligned_cols=87 Identities=22% Similarity=0.387 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
.....++|||+|||.++++++|+++|+.||.|+.|.|+.+..++++++||||+|.+.++|++||..++ .|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35667899999999999999999999999999999999998899999999999999999999998655 8999999999
Q ss_pred eccCCCCCC
Q 026534 175 SATPLDDAG 183 (237)
Q Consensus 175 ~a~~~~~~~ 183 (237)
++.++..+.
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876553
No 36
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=127.76 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEec
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 176 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~a 176 (237)
.+.++|||+|||+++++++|+++|++||.|+.|.|+.|..|++++|||||+|.+.++|++||..+ ..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999754 4999999999998
Q ss_pred cCCC
Q 026534 177 TPLD 180 (237)
Q Consensus 177 ~~~~ 180 (237)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7554
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=124.11 Aligned_cols=86 Identities=27% Similarity=0.468 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEE-EeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~-~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
.+.++|||+|||+++++++|+++|++||.|..| .|+.++.++.+++||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 999998899999999999999999999997554 89999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++.....
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 998765543
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=125.56 Aligned_cols=87 Identities=28% Similarity=0.468 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~ 175 (237)
....++|||+|||+.+++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++||..+ ..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999999899999999999999999999999654 489999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++....+
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998776654
No 39
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=3.1e-19 Score=127.15 Aligned_cols=87 Identities=24% Similarity=0.401 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++||.. ...|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45668999999999999999999999999999999999988999999999999999999999965 4489999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++....+
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpz_A 102 KRSKNDSKS 110 (115)
T ss_dssp CCCSCCCCC
T ss_pred cCCCCcCCC
Confidence 998876654
No 40
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=1e-18 Score=124.38 Aligned_cols=87 Identities=32% Similarity=0.452 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~ 175 (237)
.....+|||+|||+.+++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||..+ ..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 556789999999999999999999999999999999999889999999999999999999999754 489999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++.....
T Consensus 92 a~~~~~~~~ 100 (115)
T 2dgo_A 92 ATRKPPAPK 100 (115)
T ss_dssp SSCCCCCSC
T ss_pred ccCCCCCCc
Confidence 998766543
No 41
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=4.2e-19 Score=126.70 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
.....+|||+|||+++++++|+++|++||.|+.|.|+.+. ++.+++||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999996 89999999999999999999997544 89999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
++++...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876543
No 42
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=125.26 Aligned_cols=87 Identities=32% Similarity=0.500 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
.....+|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|+.||.. ...|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 55678999999999999999999999999999999999988999999999999999999999964 4489999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++.....
T Consensus 89 a~~~~~~~~ 97 (102)
T 1x5s_A 89 AGKSSDNRS 97 (102)
T ss_dssp EECCCCCCC
T ss_pred CCCCCCCCC
Confidence 988766543
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.3e-19 Score=124.22 Aligned_cols=88 Identities=28% Similarity=0.512 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecC-CCCCCCcceEEEEEcCHHHHHHHHhc---CCccCCeEEE
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKD-PKRTGHRGFGFVTFAEEVVADRVSRR---SHEICGQQVA 172 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~-~~~~~~~g~afv~f~~~~~a~~a~~~---~~~~~g~~l~ 172 (237)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+ ..++.+++||||+|.+.++|++||.. ...|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3566789999999999999999999999999999999998 78999999999999999999999965 4599999999
Q ss_pred EEeccCCCCCCC
Q 026534 173 IDSATPLDDAGP 184 (237)
Q Consensus 173 v~~a~~~~~~~~ 184 (237)
|.++.++.....
T Consensus 91 v~~a~~~~~~~~ 102 (107)
T 2cph_A 91 LEWADSEVTVQS 102 (107)
T ss_dssp EEECCCCCCCCC
T ss_pred EEeCCCCCCCCC
Confidence 999998766543
No 44
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=2.5e-20 Score=148.40 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G--~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
...+|||+|||+++|+++|+++|++|| .|+.|.|+.++.++++++||||+|.+.++|++||..++ .|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 99999999999999999999999999999999998655 89999999999
Q ss_pred ccCC
Q 026534 176 ATPL 179 (237)
Q Consensus 176 a~~~ 179 (237)
+.++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 45
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.6e-19 Score=123.16 Aligned_cols=84 Identities=21% Similarity=0.453 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCC-CCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR-TGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~-~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
..+..+|||+|||+++++++|+++|++|| |..|.|+.+..+ +++++||||+|.+.++|++|| .++ .|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45678999999999999999999999999 999999999887 899999999999999999999 544 8999999999
Q ss_pred eccCCCCCC
Q 026534 175 SATPLDDAG 183 (237)
Q Consensus 175 ~a~~~~~~~ 183 (237)
++.++....
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 999876654
No 46
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9.3e-19 Score=123.77 Aligned_cols=87 Identities=24% Similarity=0.403 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--------CCccCCe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--------SHEICGQ 169 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--------~~~~~g~ 169 (237)
.....+|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||.. ...|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 55678999999999999999999999999999999999999999999999999999999999964 4589999
Q ss_pred EEEEEeccCCCCCCC
Q 026534 170 QVAIDSATPLDDAGP 184 (237)
Q Consensus 170 ~l~v~~a~~~~~~~~ 184 (237)
.|.|.++.++.....
T Consensus 92 ~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 92 QLKVDLAVTRDEAAS 106 (111)
T ss_dssp EEEEECCCCCCCCCC
T ss_pred EEEEEECCCCccCCC
Confidence 999999998866654
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=7.3e-20 Score=125.74 Aligned_cols=81 Identities=17% Similarity=0.347 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCc--EEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC------ccCCe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH------EICGQ 169 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~--i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~------~~~g~ 169 (237)
.....+|||+|||+++|+++|+++|++||. +.+|+|++|+.+++++|||||+|.+.++|++||..++ .|.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456789999999999999999999999995 5689999999999999999999999999999986432 48999
Q ss_pred EEEEEeccC
Q 026534 170 QVAIDSATP 178 (237)
Q Consensus 170 ~l~v~~a~~ 178 (237)
+|.|++|++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=7.1e-19 Score=123.18 Aligned_cols=86 Identities=26% Similarity=0.437 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCC---eEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICG---QQVA 172 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g---~~l~ 172 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+. ++.+++||||+|.+.++|++||..+ ..+.+ +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4567899999999999999999999999999999999996 7889999999999999999999744 47777 9999
Q ss_pred EEeccCCCCCCC
Q 026534 173 IDSATPLDDAGP 184 (237)
Q Consensus 173 v~~a~~~~~~~~ 184 (237)
|.++.++.++.+
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999998877654
No 49
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=8e-19 Score=121.83 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+. ++++++||||+|.+.++|++||..+ ..|.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999996 8889999999999999999999754 489999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
+.++..+
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9987653
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.3e-19 Score=123.41 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+ ++.+++||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 556889999999999999999999999999999999988 788999999999999999999974 4489999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++..+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 998876654
No 51
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=2.2e-19 Score=136.10 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45578999999999999999999999999999999999999999999999999999999999974 4589999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++.....
T Consensus 149 a~~~~~~~~ 157 (165)
T 1rk8_A 149 CFVKGPKRV 157 (165)
T ss_dssp SEECC----
T ss_pred ecCCCCCCC
Confidence 988765543
No 52
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=5.2e-19 Score=124.06 Aligned_cols=86 Identities=26% Similarity=0.494 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--cc---CCeEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQQVA 172 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~---~g~~l~ 172 (237)
.....+|||+|||.++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++||..++ .+ .++.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 5567899999999999999999999999999999999999999999999999999999999997544 55 889999
Q ss_pred EEeccCCCCCC
Q 026534 173 IDSATPLDDAG 183 (237)
Q Consensus 173 v~~a~~~~~~~ 183 (237)
|.++.++....
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99998876543
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=4.4e-19 Score=118.79 Aligned_cols=80 Identities=29% Similarity=0.442 Sum_probs=74.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEeccC
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSATP 178 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~a~~ 178 (237)
+.+|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++|+.. ...|.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999974 5589999999999998
Q ss_pred CC
Q 026534 179 LD 180 (237)
Q Consensus 179 ~~ 180 (237)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 54
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=1.2e-18 Score=121.69 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
..+..+|||+|||+++++++|+++|++|| |..|.|+.+..++++++||||+|.+.++|++|| .++ .|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45678999999999999999999999997 999999999989999999999999999999999 544 89999999999
Q ss_pred ccCCCCCC
Q 026534 176 ATPLDDAG 183 (237)
Q Consensus 176 a~~~~~~~ 183 (237)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 98876543
No 55
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=120.36 Aligned_cols=81 Identities=31% Similarity=0.450 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEec
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 176 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~a 176 (237)
....+|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|+.|+.. ...|.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4568999999999999999999999999999999999988999999999999999999999974 45899999999999
Q ss_pred cCC
Q 026534 177 TPL 179 (237)
Q Consensus 177 ~~~ 179 (237)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 56
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4e-19 Score=124.50 Aligned_cols=87 Identities=32% Similarity=0.528 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-CCccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~g~~l~v~~a 176 (237)
....++|||+|||+.+++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||.. ...|.|+.|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 56678999999999999999999999999999999999989999999999999999999999975 44899999999999
Q ss_pred cCCCCCCC
Q 026534 177 TPLDDAGP 184 (237)
Q Consensus 177 ~~~~~~~~ 184 (237)
.++.....
T Consensus 93 ~~~~~~~~ 100 (105)
T 2dh8_A 93 TPRGMQPS 100 (105)
T ss_dssp CCSSCCTT
T ss_pred cCCCCCCC
Confidence 98766543
No 57
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=4.1e-19 Score=128.55 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~ 175 (237)
.....+|||+|||+.+++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||. +...|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4557899999999999999999999999999999999998899999999999999999999996 45599999999999
Q ss_pred ccCCCCCC
Q 026534 176 ATPLDDAG 183 (237)
Q Consensus 176 a~~~~~~~ 183 (237)
+.++....
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 98775553
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5e-19 Score=122.40 Aligned_cols=86 Identities=20% Similarity=0.340 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCC---CCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEE
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK---RTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 173 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~---~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v 173 (237)
.+.++|||+|||+++++++|+++|++||.|..|.|+.+.. ++.+++||||+|.+.++|++||..++ .|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999998866 55889999999999999999997544 899999999
Q ss_pred EeccCCCCCCC
Q 026534 174 DSATPLDDAGP 184 (237)
Q Consensus 174 ~~a~~~~~~~~ 184 (237)
.++.++....+
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99988766544
No 59
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=122.76 Aligned_cols=86 Identities=21% Similarity=0.330 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc-CCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--c-cCCeEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSR-FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E-ICGQQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~-~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~-~~g~~l~v 173 (237)
..+..+|||+|||+++++++|+++|++ ||.|..|.|+.+. ++++++||||+|.+.++|++||..++ . |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999997 89999999999999999999998655 6 99999999
Q ss_pred EeccCCCCCCC
Q 026534 174 DSATPLDDAGP 184 (237)
Q Consensus 174 ~~a~~~~~~~~ 184 (237)
.++.++.....
T Consensus 85 ~~a~~~~~~~~ 95 (104)
T 2dhg_A 85 SVAIPKASRVK 95 (104)
T ss_dssp CBCCCCCSCCC
T ss_pred EEccCCCcCCC
Confidence 99988766543
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=118.78 Aligned_cols=80 Identities=25% Similarity=0.485 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++|+..++ .|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4567899999999999999999999999999999999998899999999999999999999997655 89999999999
Q ss_pred cc
Q 026534 176 AT 177 (237)
Q Consensus 176 a~ 177 (237)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 61
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.9e-19 Score=124.95 Aligned_cols=87 Identities=34% Similarity=0.617 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-CCccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~g~~l~v~~a 176 (237)
....++|||+|||+++++++|+++|.+||.|..|.|+.+..++++++||||+|.+.++|++||.. ...|.|+.|.|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34458999999999999999999999999999999999999999999999999999999999975 33899999999999
Q ss_pred cCCCCCCC
Q 026534 177 TPLDDAGP 184 (237)
Q Consensus 177 ~~~~~~~~ 184 (237)
.++.....
T Consensus 104 ~~~~~~~~ 111 (116)
T 1x4b_A 104 VAREESGS 111 (116)
T ss_dssp SSCCCCCC
T ss_pred CCCccCCC
Confidence 98866543
No 62
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=123.61 Aligned_cols=86 Identities=16% Similarity=0.257 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEE--------EEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccC
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEIC 167 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~--------~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~ 167 (237)
....++|||+|||+++++++|+++|++||.|. .|.|+.++.++++++||||+|.+.++|++||. +...|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 55678999999999999999999999999998 69999998999999999999999999999997 455899
Q ss_pred CeEEEEEeccCCCCCC
Q 026534 168 GQQVAIDSATPLDDAG 183 (237)
Q Consensus 168 g~~l~v~~a~~~~~~~ 183 (237)
|+.|+|.++.++....
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999999876653
No 63
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=1.5e-18 Score=122.48 Aligned_cols=85 Identities=35% Similarity=0.611 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-ccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~g~~l~v~~a 176 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..+. .|.|+.|.|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 4567899999999999999999999999999999999998899999999999999999999997654 899999999999
Q ss_pred cCCCCC
Q 026534 177 TPLDDA 182 (237)
Q Consensus 177 ~~~~~~ 182 (237)
.++...
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987654
No 64
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=2.3e-18 Score=149.11 Aligned_cols=85 Identities=22% Similarity=0.366 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
..+.++|||+|||+.+|+++|+++|.+||.|+.|.|+.+..++++++||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998899999999999999999999997554 99999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
+.++...
T Consensus 179 a~~~~~~ 185 (437)
T 3pgw_S 179 ERGRTVK 185 (437)
T ss_pred eCCCCCC
Confidence 9977554
No 65
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7e-19 Score=123.42 Aligned_cols=84 Identities=21% Similarity=0.348 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|||+.+++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45578999999999999999999999999999999999999999999999999999999999964 5589999999999
Q ss_pred ccCCCC
Q 026534 176 ATPLDD 181 (237)
Q Consensus 176 a~~~~~ 181 (237)
+.++.+
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987654
No 66
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=9.2e-19 Score=123.66 Aligned_cols=85 Identities=20% Similarity=0.334 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|||+.+++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|+.||.. ...|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999974 5589999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
+.++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9876543
No 67
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-18 Score=119.45 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCC-----eE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG-----QQ 170 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g-----~~ 170 (237)
.....+|||+|||+++++++|+++|++||.|+.|.|+.+ +||||+|.+.++|++||..++ .|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999886 799999999999999998665 7888 99
Q ss_pred EEEEeccCCCCCC
Q 026534 171 VAIDSATPLDDAG 183 (237)
Q Consensus 171 l~v~~a~~~~~~~ 183 (237)
|+|.++.++....
T Consensus 85 i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 85 IRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEESSCCSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999866553
No 68
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=119.32 Aligned_cols=81 Identities=28% Similarity=0.404 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++|+..++ .|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 5567899999999999999999999999999999999998899999999999999999999997544 89999999999
Q ss_pred ccC
Q 026534 176 ATP 178 (237)
Q Consensus 176 a~~ 178 (237)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 69
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.9e-18 Score=116.81 Aligned_cols=79 Identities=30% Similarity=0.659 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC-CccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~-~~~~g~~l~v~~a 176 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++|+... +.|.|+.|.|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 456789999999999999999999999999999999999889999999999999999999999653 3899999999875
No 70
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=1.4e-18 Score=119.67 Aligned_cols=81 Identities=16% Similarity=0.375 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEeccC
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSATP 178 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~a~~ 178 (237)
+++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++|+.. ...|.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988999999999999999999999964 4589999999999987
Q ss_pred CCC
Q 026534 179 LDD 181 (237)
Q Consensus 179 ~~~ 181 (237)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 71
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-18 Score=118.37 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||+|||+.+++++|+++|++||.|..|.|+.+..+ +++||||+|.+.++|++||..++ .|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 556789999999999999999999999999999999998544 68999999999999999997544 89999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++.....
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cqi_A 90 ATTPSSQKS 98 (103)
T ss_dssp CCCTTCCCC
T ss_pred CCCCccccc
Confidence 998665543
No 72
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.4e-19 Score=123.23 Aligned_cols=82 Identities=21% Similarity=0.366 Sum_probs=68.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC--cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEecc
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 177 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G--~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~a~ 177 (237)
.+|||+|||+++++++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|++||..+ ..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999999999999999999999999999654 49999999999998
Q ss_pred CCCCCC
Q 026534 178 PLDDAG 183 (237)
Q Consensus 178 ~~~~~~ 183 (237)
++....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876554
No 73
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.5e-18 Score=118.21 Aligned_cols=85 Identities=31% Similarity=0.557 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+... +++||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 566799999999999999999999999999999999988543 899999999999999999974 4589999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++.....
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cq3_A 90 ATARVMTNS 98 (103)
T ss_dssp CCSSCCCCC
T ss_pred cccCCCCCC
Confidence 998766543
No 74
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=1.1e-18 Score=117.47 Aligned_cols=80 Identities=29% Similarity=0.492 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~ 175 (237)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|+.|+. +...|.|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999996 45599999999999
Q ss_pred cc
Q 026534 176 AT 177 (237)
Q Consensus 176 a~ 177 (237)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 75
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=8.8e-19 Score=124.81 Aligned_cols=82 Identities=26% Similarity=0.423 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEecc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSAT 177 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~a~ 177 (237)
...+|||+|||+++++++|+++|++||.|..|+|+.+. +.++|||||+|.+.++|++||.. ...|.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999884 33789999999999999999965 459999999999998
Q ss_pred CCCCCC
Q 026534 178 PLDDAG 183 (237)
Q Consensus 178 ~~~~~~ 183 (237)
++..+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 876544
No 76
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=122.07 Aligned_cols=83 Identities=25% Similarity=0.474 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~ 175 (237)
.....+|||+|||..+++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|+.|+. +...|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 5567899999999999999999999999999999999998899999999999999999999996 45589999999999
Q ss_pred ccCCC
Q 026534 176 ATPLD 180 (237)
Q Consensus 176 a~~~~ 180 (237)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98875
No 77
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-18 Score=118.86 Aligned_cols=83 Identities=22% Similarity=0.405 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|..+ +.+++||||+|.+.++|++||..+ ..|.++.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 556789999999999999999999999999999999654 447899999999999999999654 489999999999
Q ss_pred ccCCCCCC
Q 026534 176 ATPLDDAG 183 (237)
Q Consensus 176 a~~~~~~~ 183 (237)
+.++....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4a_A 96 PRSGRGTG 103 (109)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 98765443
No 78
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=120.04 Aligned_cols=83 Identities=18% Similarity=0.315 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEE-EEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeE----
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL-DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ---- 170 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~-~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~---- 170 (237)
....++|||+|||+++++++|+++|++||.|. .|.|+.++.++.+++||||+|.+.++|++|+..++ .|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45679999999999999999999999999999 99999998899999999999999999999997655 889998
Q ss_pred EEEEeccCCC
Q 026534 171 VAIDSATPLD 180 (237)
Q Consensus 171 l~v~~a~~~~ 180 (237)
|+|.++.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999988653
No 79
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1.2e-18 Score=126.55 Aligned_cols=84 Identities=29% Similarity=0.363 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 56678999999999999999999999999999999999999999999999999999999999974 4589999999999
Q ss_pred ccCCCC
Q 026534 176 ATPLDD 181 (237)
Q Consensus 176 a~~~~~ 181 (237)
+.++.+
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 987653
No 80
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=120.29 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC----CccCCeEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~----~~~~g~~l~v 173 (237)
..+..+|||+|||+++++++|+++|++||.|++|.|+.+ ++||||+|++.++|+.||..+ ..|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999875 699999999999999999732 4799999999
Q ss_pred EeccCCCCCCC
Q 026534 174 DSATPLDDAGP 184 (237)
Q Consensus 174 ~~a~~~~~~~~ 184 (237)
.+++++.....
T Consensus 87 ~~A~~~~~~~~ 97 (105)
T 1sjq_A 87 QFSNHKELKTD 97 (105)
T ss_dssp CCCSSSSCCCT
T ss_pred EEcCCCCCCcc
Confidence 99988765543
No 81
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-17 Score=118.54 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|.+||.|..|.|+.+. ++++++||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4567899999999999999999999999999999999986 588999999999999999999974 4589999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
+.+....
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 8765444
No 82
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.1e-18 Score=117.40 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 171 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~----~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l 171 (237)
....++|||+|||+++++++|+ ++|++||.|..|.|+.+..+ ++||||+|.+.++|++||..++ .|.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4456899999999999999999 99999999999999998665 7899999999999999997555 8999999
Q ss_pred EEEeccCCCCC
Q 026534 172 AIDSATPLDDA 182 (237)
Q Consensus 172 ~v~~a~~~~~~ 182 (237)
+|+++.++...
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999876544
No 83
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.2e-18 Score=117.62 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEE-EEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~-~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~g~~l~v~~ 175 (237)
.....+|||+|||+++++++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|++||.. ...|.++.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 456789999999999999999999999999987 889888 8899999999999999999999975 3489999999999
Q ss_pred ccCCCC
Q 026534 176 ATPLDD 181 (237)
Q Consensus 176 a~~~~~ 181 (237)
+.+++-
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 876543
No 84
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=6.6e-18 Score=115.12 Aligned_cols=81 Identities=10% Similarity=0.241 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
.....+|||+|||+++++++|+++|++| .|..|.|+.+ .++++++||||+|.+.++|++||. ++ .|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 8999999999 889999999999999999999998 66 89999999999
Q ss_pred ccCCCC
Q 026534 176 ATPLDD 181 (237)
Q Consensus 176 a~~~~~ 181 (237)
+.++..
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987754
No 85
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=117.07 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCC-CcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEec
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 176 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~-~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~a 176 (237)
..++|||+|||.++++++|+++|++||.|..|.|+.+..++. +++||||+|.+.++|++|+. +...|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999999877665 89999999999999999997 455999999999999
Q ss_pred cCCCC
Q 026534 177 TPLDD 181 (237)
Q Consensus 177 ~~~~~ 181 (237)
.+..+
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 86
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=118.47 Aligned_cols=81 Identities=25% Similarity=0.353 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEE--------EEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCcc
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEI 166 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~--------~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~ 166 (237)
+.....+|||+|||.++++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|+.|+. +...|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3566799999999999999999999999999999 9999998999999999999999999999996 45589
Q ss_pred CCeEEEEEecc
Q 026534 167 CGQQVAIDSAT 177 (237)
Q Consensus 167 ~g~~l~v~~a~ 177 (237)
.|+.|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 87
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=1.2e-17 Score=116.48 Aligned_cols=79 Identities=27% Similarity=0.386 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~ 175 (237)
..+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||..+ ..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 4567899999999999999999999999999999985 359999999999999999754 489999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++.....
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 998776554
No 88
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=4.9e-18 Score=115.19 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=73.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEeccC
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 178 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~~ 178 (237)
.++|||+|||+++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++|+ .++ .|.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999889999999999999999999999 544 89999999999986
Q ss_pred C
Q 026534 179 L 179 (237)
Q Consensus 179 ~ 179 (237)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 89
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=117.62 Aligned_cols=86 Identities=26% Similarity=0.459 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCc-EEEEEee-cCCCCCCCcceEEEEEcCHHHHHHHHhcC----CccCCeEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVP-KDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQV 171 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~-i~~~~v~-~~~~~~~~~g~afv~f~~~~~a~~a~~~~----~~~~g~~l 171 (237)
....++|||+|||+++++++|+++|.+||. |..|.|+ .+..++.+++||||+|.+.++|+.|+..+ ..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 78888899999999999999999999754 47899999
Q ss_pred EEEeccCCCCCC
Q 026534 172 AIDSATPLDDAG 183 (237)
Q Consensus 172 ~v~~a~~~~~~~ 183 (237)
+|.++.++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876643
No 90
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=117.02 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC----ccCCeEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~----~~~g~~l~v 173 (237)
..++++|||+|||+++++++|+++|++||.|++|.+++ .+++|||+|++.++|.+|+..++ .|.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 45678999999999999999999999999999999875 47899999999999999997543 488999999
Q ss_pred EeccCCC
Q 026534 174 DSATPLD 180 (237)
Q Consensus 174 ~~a~~~~ 180 (237)
.++++++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=6e-18 Score=120.94 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|+.||..++ .|.|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 5567899999999999999999999999999999999998899999999999999999999997654 89999999998
Q ss_pred cc
Q 026534 176 AT 177 (237)
Q Consensus 176 a~ 177 (237)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 92
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-17 Score=115.30 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc----CCccCCeEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR----SHEICGQQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~----~~~~~g~~l~v 173 (237)
..++++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|+.. ...|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 456789999999999999999999999999999988774 78999999999999999873 34799999999
Q ss_pred EeccCCCCCC
Q 026534 174 DSATPLDDAG 183 (237)
Q Consensus 174 ~~a~~~~~~~ 183 (237)
.++.++....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9998876654
No 93
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.9e-18 Score=118.79 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~a 176 (237)
.....+|||+|||+++++++|+++|++|| ++.|.|+.++ ++++++||||+|.+.++|++||. +...|.++.|.|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 45678999999999999999999999999 4599999996 89999999999999999999995 334899999999998
Q ss_pred cCCC
Q 026534 177 TPLD 180 (237)
Q Consensus 177 ~~~~ 180 (237)
.+.+
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 94
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=3.9e-19 Score=123.47 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCC-eE
Q 026534 100 IGKKIFVGRLPQ------EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICG-QQ 170 (237)
Q Consensus 100 ~~~~l~v~~lp~------~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g-~~ 170 (237)
..++|||+|||+ ++++++|+++|++||.|..|.|+.+..|++++|||||+|.+.++|++||.. ...|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 999999999999999999999999999999999999999999999999964 458998 99
Q ss_pred EEEEeccCCC
Q 026534 171 VAIDSATPLD 180 (237)
Q Consensus 171 l~v~~a~~~~ 180 (237)
|.|.++.+++
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998653
No 95
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=5.2e-18 Score=115.79 Aligned_cols=83 Identities=23% Similarity=0.372 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
.....+|||+|||+++++++|+++|++||.|..|.|..+ ++++++||||+|.+.++|++|+.. ...|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999874 778999999999999999999974 4489999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
+.+....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9876544
No 96
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5e-18 Score=120.84 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC----CccCCeEEE
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVA 172 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~----~~~~g~~l~ 172 (237)
...++++|||+|||+++++++|+++|++||.|+.|.|+.+ ++||||+|++.++|++|+..+ ..|.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3556789999999999999999999999999999999875 799999999999999998743 479999999
Q ss_pred EEeccCCCCCCC
Q 026534 173 IDSATPLDDAGP 184 (237)
Q Consensus 173 v~~a~~~~~~~~ 184 (237)
|.++++++....
T Consensus 101 V~~a~~k~~~~~ 112 (119)
T 2ad9_A 101 IQFSNHKELKTD 112 (119)
T ss_dssp EEECSSSSCCCC
T ss_pred EEEccCCCCCcc
Confidence 999988766643
No 97
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=117.56 Aligned_cols=79 Identities=11% Similarity=0.136 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC----CccCCeEEE
Q 026534 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVA 172 (237)
Q Consensus 98 ~~~~~~l~v~~lp~-~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~----~~~~g~~l~ 172 (237)
..++.+|||+|||+ .+++++|+++|++||.|..|.|+.+ ++||||+|++.++|+.||..+ ..|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999875 579999999999999999743 259999999
Q ss_pred EEeccCCCCC
Q 026534 173 IDSATPLDDA 182 (237)
Q Consensus 173 v~~a~~~~~~ 182 (237)
|.++.+....
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999865543
No 98
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.3e-18 Score=118.27 Aligned_cols=80 Identities=15% Similarity=0.319 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~a 176 (237)
.....+|||+|||+++|+++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|++||. +.+.|.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34568999999999999999999999999999999999976 8899999999999999999997 345899999999987
Q ss_pred cC
Q 026534 177 TP 178 (237)
Q Consensus 177 ~~ 178 (237)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 99
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=118.31 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|.+||.|..+.++.+..++++++||||+|.+.++|++||..++ .|.|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4556899999999999999999999999999888888888899999999999999999999997655 89999999999
Q ss_pred ccCC
Q 026534 176 ATPL 179 (237)
Q Consensus 176 a~~~ 179 (237)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 100
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=7.1e-18 Score=118.43 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
.....+|||+|||+.+++++|+++|++||.|..|.|+.+. ++++++||||+|.+.++|++||.. ...|.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 5667899999999999999999999999999999999997 899999999999999999999974 4589999999999
Q ss_pred cc
Q 026534 176 AT 177 (237)
Q Consensus 176 a~ 177 (237)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 101
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.2e-17 Score=114.73 Aligned_cols=81 Identities=23% Similarity=0.384 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.| .++.+ .++++++||||+|.+.++|++||..++ .|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 5567999999999999999999999999976 56666 678899999999999999999998655 89999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
+.++...
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9887544
No 102
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-18 Score=124.25 Aligned_cols=83 Identities=19% Similarity=0.367 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEec
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 176 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a 176 (237)
...++|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++|| .++ .|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34579999999999999999999999999999999999989999999999999999999999 544 899999999999
Q ss_pred cCCCCC
Q 026534 177 TPLDDA 182 (237)
Q Consensus 177 ~~~~~~ 182 (237)
.++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876543
No 103
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=116.51 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
.....+|||+|||+.+++++|+++|++||.|..|.|+.+.. +++++||||+|.+.++|++|+.. ...|.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 45678999999999999999999999999999999999865 88999999999999999999974 4589999999999
Q ss_pred ccC
Q 026534 176 ATP 178 (237)
Q Consensus 176 a~~ 178 (237)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 104
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=127.54 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEe
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G--~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~ 175 (237)
...+|||+|||+++++++|+++|++|| .|..|.|+.|..+++++|||||+|.+.++|++||..+ ..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 9999999999999999999999999999999999764 499999999999
Q ss_pred ccCC
Q 026534 176 ATPL 179 (237)
Q Consensus 176 a~~~ 179 (237)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 105
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=113.16 Aligned_cols=78 Identities=24% Similarity=0.561 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|. ++||||+|.+.++|++|+..+ ..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999986 579999999999999999654 489999999999
Q ss_pred ccCCCCCC
Q 026534 176 ATPLDDAG 183 (237)
Q Consensus 176 a~~~~~~~ 183 (237)
+.++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99876654
No 106
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-17 Score=114.91 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC----CccCCeEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~----~~~~g~~l~v 173 (237)
..++++|||+|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|+..+ ..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998763 789999999999999998743 3599999999
Q ss_pred EeccCCCCCC
Q 026534 174 DSATPLDDAG 183 (237)
Q Consensus 174 ~~a~~~~~~~ 183 (237)
.++.++....
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9998876554
No 107
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=5.9e-18 Score=123.29 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEE--EEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCC----ccCCe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSH----EICGQ 169 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~--~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~----~~~g~ 169 (237)
.....+|||+|||+++++++|+++|++||.|.. |+|+.|+.+++++|||||+|.+. +|..||. +.. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999976 99999998999999999999999 9999985 445 78999
Q ss_pred EEEEEeccCCCCC
Q 026534 170 QVAIDSATPLDDA 182 (237)
Q Consensus 170 ~l~v~~a~~~~~~ 182 (237)
.|.|+++.++...
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999886544
No 108
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.9e-18 Score=118.57 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHHhcCCcEEEEEeecCCCCC---CCcceEEEEEcCHHHHHHHHhcC--CccCCe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLR---RYFSRFGRILDVYVPKDPKRT---GHRGFGFVTFAEEVVADRVSRRS--HEICGQ 169 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~---~~F~~~G~i~~~~v~~~~~~~---~~~g~afv~f~~~~~a~~a~~~~--~~~~g~ 169 (237)
....++|||+|||+++++++|+ ++|++||.|..|.|+.+..++ ++++||||+|.+.++|++||..+ ..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4557899999999999999999 999999999999999987654 45699999999999999999754 489999
Q ss_pred EEEEEeccCCCC
Q 026534 170 QVAIDSATPLDD 181 (237)
Q Consensus 170 ~l~v~~a~~~~~ 181 (237)
.|+|.++.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998763
No 109
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=118.96 Aligned_cols=81 Identities=21% Similarity=0.450 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCC-CCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDP-KRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~-~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
....++|||+|||+++++++|+++|++|| |..|.|+.+. .+++++|||||+|.+.++|++|| .++ .|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 55679999999999999999999999999 9999999997 58999999999999999999999 544 8999999999
Q ss_pred eccCCC
Q 026534 175 SATPLD 180 (237)
Q Consensus 175 ~a~~~~ 180 (237)
++.++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 110
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=1.3e-17 Score=120.29 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~ 177 (237)
...+|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|+.|| .++ .|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999999999889999999999999999999999 444 8999999999998
Q ss_pred CCCCC
Q 026534 178 PLDDA 182 (237)
Q Consensus 178 ~~~~~ 182 (237)
+....
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 65443
No 111
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=116.12 Aligned_cols=82 Identities=29% Similarity=0.458 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|+.|+ .|.++.+..++++++||||+|.+.++|++||. +...|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 56679999999999999999999999874 57788888889999999999999999999996 45599999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
++++.++
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9987654
No 112
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.7e-18 Score=119.20 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcE-EEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i-~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~g~~l~v~~ 175 (237)
.....+|||+|||+++++++|+++|++||.| ..|.|+.+. ++++++||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4567899999999999999999999999999 889999997 899999999999999999999875 3389999999999
Q ss_pred ccCCC
Q 026534 176 ATPLD 180 (237)
Q Consensus 176 a~~~~ 180 (237)
+.+++
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98765
No 113
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=3.4e-17 Score=118.06 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||+|||..+++++|+++|++||.|..|.|+.+. ++++++||||+|.+.++|++|+..++ .|.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 5667899999999999999999999999999999999997 89999999999999999999997544 89999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.+.....+
T Consensus 111 a~~~~~~~~ 119 (124)
T 2kt5_A 111 VASQIDLEH 119 (124)
T ss_dssp ECCTTCCCC
T ss_pred eCCCCCCCC
Confidence 987655543
No 114
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.7e-18 Score=121.45 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
..+.++|||+|||+++++++|+++|++||.|..|.+..+..++++++||||+|.+.++|+.||..++ .|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999988433222222367789999999999999999997544 89999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++....+
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 998776654
No 115
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=5.2e-18 Score=111.34 Aligned_cols=74 Identities=42% Similarity=0.719 Sum_probs=68.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEec
Q 026534 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (237)
Q Consensus 103 ~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~a 176 (237)
+|||+|||+++++++|+++|++||.|..|.++.+..++++++||||+|.+.++|++|+. +...|.|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999986 344899999999875
No 116
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-18 Score=120.46 Aligned_cols=84 Identities=27% Similarity=0.514 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEec
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 176 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a 176 (237)
...++|||+|||+.+++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|+.|+..++ .|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 346899999999999999999999999999999999998899999999999999999999997554 899999999999
Q ss_pred cCCCCC
Q 026534 177 TPLDDA 182 (237)
Q Consensus 177 ~~~~~~ 182 (237)
.++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 887654
No 117
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=1e-17 Score=113.70 Aligned_cols=80 Identities=39% Similarity=0.743 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCCccCCeEEEEEecc
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSAT 177 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~g~~l~v~~a~ 177 (237)
..+..+|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|+++......+.++.|.|.++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcC
Confidence 456789999999999999999999999999999999886 789999999999999965444446789999999999
Q ss_pred CCCCC
Q 026534 178 PLDDA 182 (237)
Q Consensus 178 ~~~~~ 182 (237)
|+..+
T Consensus 83 ~k~~~ 87 (89)
T 3d2w_A 83 PKHNK 87 (89)
T ss_dssp -----
T ss_pred CCCcC
Confidence 87543
No 118
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=1.6e-18 Score=127.19 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~a 176 (237)
.....+|||+|||+++|+++|+++|++|| |+.|.|+.+.. ++++|||||+|.+.++|++||. +...|.++.|.|..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999 77999999965 8999999999999999999994 334899999999998
Q ss_pred cCCCC
Q 026534 177 TPLDD 181 (237)
Q Consensus 177 ~~~~~ 181 (237)
.+++.
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 86543
No 119
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=4.6e-17 Score=119.68 Aligned_cols=80 Identities=30% Similarity=0.500 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
......+|||+|||..+++++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++||..++ .|.|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999999998999999999999999999999997665 8999999998
Q ss_pred ec
Q 026534 175 SA 176 (237)
Q Consensus 175 ~a 176 (237)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 120
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=111.93 Aligned_cols=79 Identities=20% Similarity=0.374 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|++ +||||+|.+.++|++|+..+ ..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 55678999999999999999999999999999999964 49999999999999999754 489999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++....+
T Consensus 79 a~~~~~~~~ 87 (92)
T 2dgt_A 79 STSRLRTAS 87 (92)
T ss_dssp SSCCCSCCC
T ss_pred ccCCCCCCC
Confidence 988765543
No 121
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=116.48 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC----CccCCeEEE
Q 026534 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVA 172 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~-~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~----~~~~g~~l~ 172 (237)
..++++|||+|||++ +++++|+++|++||.|..|.|++ +++||||+|.+.++|+.||..+ ..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 556889999999998 99999999999999999999975 4799999999999999999743 369999999
Q ss_pred EEeccCCCCCC
Q 026534 173 IDSATPLDDAG 183 (237)
Q Consensus 173 v~~a~~~~~~~ 183 (237)
|.++.++....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998766554
No 122
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-17 Score=112.74 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccC--CeEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEIC--GQQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~--g~~l~v 173 (237)
..+.++|||+|||+++++++|+++|++||.|..|.+..+ ++||||+|.+.++|++|+.. ...|. ++.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999998764 68999999999999999975 44888 999999
Q ss_pred EeccCCCC
Q 026534 174 DSATPLDD 181 (237)
Q Consensus 174 ~~a~~~~~ 181 (237)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99998654
No 123
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-18 Score=112.60 Aligned_cols=75 Identities=37% Similarity=0.666 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC-ccCCeEEEEEec
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSA 176 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~g~~l~v~~a 176 (237)
++|||+|||+++++++|+++|++||.|..|.++.++.++++++||||+|.+.++|++|+..++ .+.|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999997554 899999999986
No 124
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-18 Score=115.58 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEec
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 176 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a 176 (237)
.++++|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|+.|+..++ .|.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999999998899999999999999999999997554 788887776654
Q ss_pred c
Q 026534 177 T 177 (237)
Q Consensus 177 ~ 177 (237)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 125
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.5e-18 Score=113.86 Aligned_cols=80 Identities=35% Similarity=0.683 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCCccCCeEEEEEeccC
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATP 178 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~g~~l~v~~a~~ 178 (237)
...++|||+|||+++++++|+++|++||.|..|.|+.+ +++||||+|.+.++|++|+.....+.++.|.|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 45689999999999999999999999999999999876 7899999999999998876555577999999999998
Q ss_pred CCCCC
Q 026534 179 LDDAG 183 (237)
Q Consensus 179 ~~~~~ 183 (237)
+....
T Consensus 78 ~~~~~ 82 (88)
T 1wf0_A 78 KHNSN 82 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76654
No 126
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.2e-17 Score=115.30 Aligned_cols=81 Identities=16% Similarity=0.332 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--Ccc--------C
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEI--------C 167 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~--------~ 167 (237)
.....+|||+|||+++++++|+++|++||.|..|.|+.+. ++.+++||||+|.+.++|+.||..+ ..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999999999999999999999999999997 8899999999999999999999644 356 5
Q ss_pred CeEEEEEeccCC
Q 026534 168 GQQVAIDSATPL 179 (237)
Q Consensus 168 g~~l~v~~a~~~ 179 (237)
+++|.|.++.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 888999999864
No 127
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=114.81 Aligned_cols=81 Identities=22% Similarity=0.414 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCe
Q 026534 98 QRIGKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ 169 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~------~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~ 169 (237)
....++|||+|||+.+ ++++|+++|++||.|..|.|+ ..+++++|||||+|.+.++|+.||..++ .|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4457899999999999 789999999999999999988 3778899999999999999999998655 89998
Q ss_pred -EEEEEeccCCC
Q 026534 170 -QVAIDSATPLD 180 (237)
Q Consensus 170 -~l~v~~a~~~~ 180 (237)
.|.|.++...+
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999987654
No 128
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-16 Score=110.70 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC--CcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~--G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v 173 (237)
....++|||+|||+.+++++|+++|++| |.|..|.+. ++||||+|.+.++|++||..++ .|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 5567899999999999999999999999 899988873 5799999999999999997544 899999999
Q ss_pred EeccCCCCC
Q 026534 174 DSATPLDDA 182 (237)
Q Consensus 174 ~~a~~~~~~ 182 (237)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 999886544
No 129
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=4.2e-18 Score=116.98 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEec
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 176 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~a 176 (237)
....+|||+|||+++++++|+++|++||.|..+.++.+..++++++||||+|.+.++|++||.. ...|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3468999999999999999999999999998888888888999999999999999999999974 55899999999987
Q ss_pred cC
Q 026534 177 TP 178 (237)
Q Consensus 177 ~~ 178 (237)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 130
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-17 Score=114.54 Aligned_cols=81 Identities=22% Similarity=0.355 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|||..+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 445789999999999999999999999999999999885 68999999999999999964 4589999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++.....
T Consensus 96 a~~~~~~~~ 104 (109)
T 1x4g_A 96 GKESPDMTS 104 (109)
T ss_dssp CCCCCSSCC
T ss_pred cCCCCCCCC
Confidence 998766543
No 131
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=7.6e-18 Score=110.52 Aligned_cols=74 Identities=35% Similarity=0.646 Sum_probs=69.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-CCccCCeEEEEEec
Q 026534 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 176 (237)
Q Consensus 103 ~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~g~~l~v~~a 176 (237)
+|||+|||+++++++|+++|++||.|..|.++.+..++.+++||||+|.+.++|++|+.. .+.|.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999988999999999999999999999974 45899999999875
No 132
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=7.4e-18 Score=117.34 Aligned_cols=84 Identities=20% Similarity=0.499 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCCccCCeEEEEEecc
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSAT 177 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~g~~l~v~~a~ 177 (237)
....++|||+|||+++++++|+++|++||.|..|.|+.+. ++++++||||+|.+.++|++|+.+.+.|.|+.|.|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECC
Confidence 3456899999999999999999999999999999999997 899999999999999999999996669999999999998
Q ss_pred CCCCC
Q 026534 178 PLDDA 182 (237)
Q Consensus 178 ~~~~~ 182 (237)
++...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 77654
No 133
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=113.22 Aligned_cols=76 Identities=30% Similarity=0.584 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEeccCC
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSATPL 179 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~a~~~ 179 (237)
++|||+|||+++++++|+++|++||.|..|.|+.+ +++||||+|.+.++|++|+.. ...+.|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999887 789999999999999999974 45899999999999887
Q ss_pred CCC
Q 026534 180 DDA 182 (237)
Q Consensus 180 ~~~ 182 (237)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 134
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4.6e-19 Score=126.47 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEE--------EEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccC
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC 167 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~--------~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~ 167 (237)
..+..+|||+|||+.+++++|+++|++||.|.. |.|+.++.++++++||||+|.+.++|++||..++ .|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999998 8999998889999999999999999999997544 899
Q ss_pred CeEEEEEeccCCCCC
Q 026534 168 GQQVAIDSATPLDDA 182 (237)
Q Consensus 168 g~~l~v~~a~~~~~~ 182 (237)
|+.|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887554
No 135
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=9.2e-18 Score=122.69 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCc---EEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 172 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~---i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~ 172 (237)
.....+|||+|||+++|+++|+++|++||. |..|.|+.+.. ++++|||||+|.+.++|++||. ++ .|.++.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999999999999999999998 88999999976 9999999999999999999998 55 89999999
Q ss_pred EEeccCCC
Q 026534 173 IDSATPLD 180 (237)
Q Consensus 173 v~~a~~~~ 180 (237)
|.++.+++
T Consensus 119 V~~a~~~e 126 (136)
T 2hgl_A 119 VFKSHRTE 126 (136)
T ss_dssp EEECCHHH
T ss_pred EEECChHH
Confidence 99987543
No 136
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=116.47 Aligned_cols=82 Identities=33% Similarity=0.602 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEE
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 174 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~ 174 (237)
.....++|||+|||.++++++|+++|++||.|..|.|+.+. +.+++||||+|.+.++|++|+.. ...|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35667899999999999999999999999999999999874 34899999999999999999974 458999999999
Q ss_pred eccCCC
Q 026534 175 SATPLD 180 (237)
Q Consensus 175 ~a~~~~ 180 (237)
++.++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 137
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=3.1e-17 Score=115.67 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
.....+|||+|||+++++++|+++|++|| .|..|.|..+ +++|||||+|.+.++|++||..++ .|.|+.|.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 8999988643 378999999999999999997655 8999999999
Q ss_pred eccCCC
Q 026534 175 SATPLD 180 (237)
Q Consensus 175 ~a~~~~ 180 (237)
++..+.
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 987543
No 138
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=4e-18 Score=115.96 Aligned_cols=80 Identities=29% Similarity=0.583 Sum_probs=70.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEeccCC
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 179 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~~~ 179 (237)
++|||+|||.++++++|+++|++||.|..|.|+.+..++++++||||+|.+.+ |+.|+..++ .+.|+.|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999889999999999999999 999997655 899999999999876
Q ss_pred CCC
Q 026534 180 DDA 182 (237)
Q Consensus 180 ~~~ 182 (237)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 139
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=115.80 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~a 176 (237)
.....+|||+|||+++++++|+++|++| .|..|.|+.+.. ++++|||||+|.+.++|++||. +.+.|.++.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3445799999999999999999999999 899999999965 8899999999999999999994 334899999999988
Q ss_pred cCC
Q 026534 177 TPL 179 (237)
Q Consensus 177 ~~~ 179 (237)
.++
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 654
No 140
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=4.2e-17 Score=108.58 Aligned_cols=72 Identities=10% Similarity=0.189 Sum_probs=66.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~ 177 (237)
.+.-|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|++|+..++ .|.|+.|+|+.|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999866 68999999999999999997655 9999999999984
No 141
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=1.2e-17 Score=120.25 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEE--EEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-CCccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~--~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~g~~l~v~ 174 (237)
.....+|||+|||+++|+++|+++|++| .|+ .|.|+.+.. ++++|||||+|.+.++|++||.. ...|.|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 4567899999999999999999999999 577 899999976 99999999999999999999974 348999999999
Q ss_pred eccCC
Q 026534 175 SATPL 179 (237)
Q Consensus 175 ~a~~~ 179 (237)
.+.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 142
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=6.5e-17 Score=116.82 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 171 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~----~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l 171 (237)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|+.|+..++ .|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4557899999999999999876 6999999999988754 56789999999999999999997654 8999999
Q ss_pred EEEeccCCCC
Q 026534 172 AIDSATPLDD 181 (237)
Q Consensus 172 ~v~~a~~~~~ 181 (237)
+|.++.++..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987654
No 143
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=5.9e-18 Score=117.64 Aligned_cols=84 Identities=17% Similarity=0.309 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~a 176 (237)
.....+|||+|||+++++++|+++|++||.|.. .++.+..++++++||||+|.+.++|++||. +...|.|+.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 345789999999999999999999999998877 667777788899999999999999999997 333899999999999
Q ss_pred cCCCCC
Q 026534 177 TPLDDA 182 (237)
Q Consensus 177 ~~~~~~ 182 (237)
.++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876554
No 144
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=9.6e-17 Score=109.07 Aligned_cols=77 Identities=27% Similarity=0.466 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|++ +||||+|.+.++|++|+.. ...|.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999964 3999999999999999974 4589999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
+.++...
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9887544
No 145
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.9e-17 Score=118.43 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCc---EEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~---i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v 173 (237)
.....+|||+|||+++++++|+++|+.||. |..|+|+.+.. ++++|||||+|.+.++|++||. +...|.++.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 455789999999999999999999999998 88999999866 8899999999999999999997 233899999999
Q ss_pred EeccCCC
Q 026534 174 DSATPLD 180 (237)
Q Consensus 174 ~~a~~~~ 180 (237)
.++.+++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987654
No 146
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9e-18 Score=121.14 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
.....+|||+|||+++++++|+++|..||.|..+.++.+..+++++|||||+|.+.++|++||. ++ .|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4566899999999999999999999999999886666666789999999999999999999997 54 89999999999
Q ss_pred ccCCC
Q 026534 176 ATPLD 180 (237)
Q Consensus 176 a~~~~ 180 (237)
+.+++
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87654
No 147
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=110.93 Aligned_cols=79 Identities=27% Similarity=0.580 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|||+.+++++|+++|++||.|..|.|..+ ++||||+|.+.++|++|+.. ...|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999764 78999999999999999965 4489999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9886544
No 148
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=115.91 Aligned_cols=81 Identities=25% Similarity=0.445 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCC---CCCcceEEEEEcCHHHHHHHHhcCCccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR---TGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~---~~~~g~afv~f~~~~~a~~a~~~~~~~~g~~l~v~ 174 (237)
....++|||+|||+++++++|+++|++||.|. +.++.+..+ ++++|||||+|.+.++|++||..++.+.|+.|.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 34568999999999999999999999999999 888888777 78999999999999999999998888888888887
Q ss_pred eccCC
Q 026534 175 SATPL 179 (237)
Q Consensus 175 ~a~~~ 179 (237)
.+.+.
T Consensus 84 ~~~~~ 88 (114)
T 2dnl_A 84 SSPTI 88 (114)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 65443
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=108.43 Aligned_cols=81 Identities=19% Similarity=0.353 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
.....+|||+|||+++++++|+++|++||.|..| +.+..+++ ||||+|.+.++|++||. ++ .|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 55555554 99999999999999998 55 89999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++....+
T Consensus 79 a~~~~~~~~ 87 (94)
T 2e5g_A 79 REQKEFQSP 87 (94)
T ss_dssp SCCSCCCCC
T ss_pred CCcCCCCCC
Confidence 877655443
No 150
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=110.37 Aligned_cols=79 Identities=19% Similarity=0.402 Sum_probs=68.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
.....+|||+|||+.+++++|+++|++||.|. +.++.+ .+++||||+|.+.++|+.||.. ...|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999986 666543 4789999999999999999965 4589999999999
Q ss_pred ccCCCC
Q 026534 176 ATPLDD 181 (237)
Q Consensus 176 a~~~~~ 181 (237)
+.++..
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 988654
No 151
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=106.29 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC---CccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS---HEICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~---~~~~g~~l~v~ 174 (237)
.....+|||+|||.++++++|+++|++||.|..|.++. +++||||+|.+.++|+.|+..+ ..+.|+.|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 45678999999999999999999999999999999987 4789999999999999999754 48999999999
Q ss_pred ecc
Q 026534 175 SAT 177 (237)
Q Consensus 175 ~a~ 177 (237)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=5.4e-17 Score=115.51 Aligned_cols=75 Identities=20% Similarity=0.336 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeE-----E
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ-----V 171 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~-----l 171 (237)
...++|||+|||+++++++|+++|++||.|+.|.|+.+ +||||+|.+.++|++||..++ +|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999775 899999999999999997544 889988 7
Q ss_pred EEEeccCCC
Q 026534 172 AIDSATPLD 180 (237)
Q Consensus 172 ~v~~a~~~~ 180 (237)
+|..+.++.
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 777766543
No 153
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1.8e-16 Score=111.83 Aligned_cols=77 Identities=26% Similarity=0.524 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~-~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~ 174 (237)
....++|||+|||+. +++++|+++|++||.|..|.| +++||||+|.+.++|++||.. ...|.|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 445689999999999 999999999999999999988 568999999999999999964 458999999999
Q ss_pred eccCCCCC
Q 026534 175 SATPLDDA 182 (237)
Q Consensus 175 ~a~~~~~~ 182 (237)
++.++...
T Consensus 96 ~a~~~~~~ 103 (110)
T 1wf1_A 96 MAGEPKPD 103 (110)
T ss_dssp ESCCCCSC
T ss_pred ECCCCCCC
Confidence 99865443
No 154
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=8.3e-17 Score=113.22 Aligned_cols=77 Identities=21% Similarity=0.402 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|||+++++++|+++|++||.|..|.|. ++||||+|.+.++|++|+.. ...|.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 5667899999999999999999999999999999986 68999999999999999964 5589999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
+.++..+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9876543
No 155
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.7e-17 Score=112.55 Aligned_cols=78 Identities=22% Similarity=0.461 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~-~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~ 174 (237)
..+.++|||+|||+ .+++++|+++|++||.|..|.|. ++||||+|.+.++|+.|+..+ ..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999983 689999999999999999754 48899999999
Q ss_pred eccCCCCCC
Q 026534 175 SATPLDDAG 183 (237)
Q Consensus 175 ~a~~~~~~~ 183 (237)
++.++....
T Consensus 79 ~a~~~~~~~ 87 (96)
T 2kvi_A 79 VSSSNARPQ 87 (96)
T ss_dssp EEECCCC--
T ss_pred EcCcCCCCC
Confidence 998765543
No 156
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=115.10 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCc---EEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~---i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v 173 (237)
.....+|||+|||+++++++|+++|+.||. |..|.|+.+.. ++++|||||+|.+.++|++||. +...|.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 456789999999999999999999999998 88999999976 9999999999999999999997 333889999999
Q ss_pred EeccCCC
Q 026534 174 DSATPLD 180 (237)
Q Consensus 174 ~~a~~~~ 180 (237)
.++.+++
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9987654
No 157
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=108.23 Aligned_cols=70 Identities=21% Similarity=0.430 Sum_probs=63.2
Q ss_pred CeEEEcCCCCCC------CHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCe-EEE
Q 026534 102 KKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ-QVA 172 (237)
Q Consensus 102 ~~l~v~~lp~~~------~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~-~l~ 172 (237)
++|||+|||..+ ++++|+++|++||.|..|.|+ +.+++++|||||+|.+.++|++|+..++ .|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999987 3678899999999999999999997655 88888 776
Q ss_pred E
Q 026534 173 I 173 (237)
Q Consensus 173 v 173 (237)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=1.4e-16 Score=125.36 Aligned_cols=83 Identities=25% Similarity=0.285 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
..+..+|||+|||+++|+++|+++|++||.|++|+|++|..++++++||||+|.+.++|+.||.. ...+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 44568999999999999999999999999999999999999999999999999999999999965 4488999999999
Q ss_pred ccCCC
Q 026534 176 ATPLD 180 (237)
Q Consensus 176 a~~~~ 180 (237)
+.+..
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87543
No 159
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-15 Score=105.38 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
....++|||+|| ++++++|+++|++||.|..|.|. .+++||||+|.+.++|++||..++ .|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456789999996 89999999999999999999985 368999999999999999997655 89999999999
Q ss_pred ccCCCCCCC
Q 026534 176 ATPLDDAGP 184 (237)
Q Consensus 176 a~~~~~~~~ 184 (237)
+.++....+
T Consensus 84 a~~~~~~~~ 92 (97)
T 1x5p_A 84 ARKQPMLDS 92 (97)
T ss_dssp CSSCCCCCS
T ss_pred CCCCCCCCC
Confidence 988765543
No 160
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=109.98 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~ 175 (237)
.....+|||+|||+.+++++|+++|++||.|..+ ..++.+++||||+|.+.++|+.|+..++ .|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999987655 3567789999999999999999998665 89999999999
Q ss_pred ccCCCCC
Q 026534 176 ATPLDDA 182 (237)
Q Consensus 176 a~~~~~~ 182 (237)
+.++...
T Consensus 88 a~~~~~~ 94 (96)
T 1fjc_A 88 TGEKGGT 94 (96)
T ss_dssp CSSSCCC
T ss_pred cCCCCCC
Confidence 9876543
No 161
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.9e-17 Score=109.66 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCc-EEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cC-CccCCeEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RS-HEICGQQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~-i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~-~~~~g~~l~v 173 (237)
....++|||+|||+++++++|+++|++||. |..+.+. +++||||+|.+.++|++|+. +. ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999998 5555552 47899999999999999996 45 5799999999
Q ss_pred EeccCCCCCC
Q 026534 174 DSATPLDDAG 183 (237)
Q Consensus 174 ~~a~~~~~~~ 183 (237)
.++.++..+.
T Consensus 78 ~~a~~~~~~~ 87 (93)
T 2cqh_A 78 DYSVSKKLRS 87 (93)
T ss_dssp EECCCCCCCC
T ss_pred EEccCccccC
Confidence 9999875543
No 162
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.9e-16 Score=108.23 Aligned_cols=74 Identities=23% Similarity=0.545 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~-~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~ 174 (237)
....++|||+|||+ ++++++|+++|++||.|..|.| +++||||+|.+.++|++|+..+ ..+.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 55678999999998 9999999999999999999988 3689999999999999999754 48899999999
Q ss_pred eccCC
Q 026534 175 SATPL 179 (237)
Q Consensus 175 ~a~~~ 179 (237)
+++++
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98865
No 163
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=8.4e-17 Score=110.85 Aligned_cols=81 Identities=30% Similarity=0.491 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQV 171 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~----~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l 171 (237)
..+.++|||+|||.++++++|+ ++|++||.|..|.+.. ++.+++||||+|.+.++|+.|+.. ...|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998874 456789999999999999999964 558999999
Q ss_pred EEEeccCCCC
Q 026534 172 AIDSATPLDD 181 (237)
Q Consensus 172 ~v~~a~~~~~ 181 (237)
.|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999988654
No 164
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=108.80 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEE-EeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~-~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~ 174 (237)
.....+|||+|||+++++++|+++|.+||.|..| .|+.++.++ .|||+|.+.++|+.||.. ...|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4456899999999999999999999999999999 488775544 399999999999999964 458999999999
Q ss_pred eccCCCC
Q 026534 175 SATPLDD 181 (237)
Q Consensus 175 ~a~~~~~ 181 (237)
++.+++.
T Consensus 88 ~a~~~~~ 94 (96)
T 2e44_A 88 YIPDEMA 94 (96)
T ss_dssp ECCCCCS
T ss_pred EcCcccc
Confidence 9998744
No 165
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=9.8e-17 Score=111.38 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEec
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 176 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~a 176 (237)
...++|||+|||.++++++|+++|++||.|..|.+.. +++||||+|.+.++|+.|+.. ...|.|+.|+|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4468999999999999999999999999999999873 679999999999999999964 45899999999999
Q ss_pred cCC
Q 026534 177 TPL 179 (237)
Q Consensus 177 ~~~ 179 (237)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 166
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=2e-16 Score=120.94 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEE
Q 026534 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (237)
Q Consensus 97 ~~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~ 174 (237)
.....++|||+|||+.+++++|+++|++||.|+.|.|+.+. ++.+++||||+|.+.++|++||..++ .|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999999997 89999999999999999999997554 8999999999
Q ss_pred eccCCC
Q 026534 175 SATPLD 180 (237)
Q Consensus 175 ~a~~~~ 180 (237)
++.+..
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987643
No 167
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-17 Score=117.37 Aligned_cols=81 Identities=21% Similarity=0.217 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcE----EEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-CCccCCeEEEE
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRI----LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAI 173 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i----~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~g~~l~v 173 (237)
....+|||+|||+++|+++|+++|++||.| ..|.|+.+ .+++++|||||+|.+.++|++||.. .+.|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 346899999999999999999999999975 58999988 5899999999999999999999975 33899999999
Q ss_pred EeccCCC
Q 026534 174 DSATPLD 180 (237)
Q Consensus 174 ~~a~~~~ 180 (237)
..+.+++
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9886543
No 168
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.67 E-value=3e-16 Score=111.54 Aligned_cols=81 Identities=16% Similarity=0.348 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
...+++|||+|||+.+++++|+++|++||.|..|.|+.+ +.+++||||+|.+.++|++|+.. ...|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 34589999999999999999974 4589999999999
Q ss_pred ccCCCC
Q 026534 176 ATPLDD 181 (237)
Q Consensus 176 a~~~~~ 181 (237)
+.++..
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 986543
No 169
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.5e-16 Score=109.65 Aligned_cols=81 Identities=14% Similarity=0.267 Sum_probs=69.6
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--cc-----CC
Q 026534 98 QRIGKKIFV--GRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI-----CG 168 (237)
Q Consensus 98 ~~~~~~l~v--~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~-----~g 168 (237)
..++.+||| +||++++++++|+++|++||.|..|.|+. .++||||+|.+.++|++|+..++ +| .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 445789999 77999999999999999999999998864 36899999999999999997655 55 58
Q ss_pred eEEEEEeccCCCCCCC
Q 026534 169 QQVAIDSATPLDDAGP 184 (237)
Q Consensus 169 ~~l~v~~a~~~~~~~~ 184 (237)
++|.|.++...+...+
T Consensus 96 ~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSGP 111 (114)
T ss_dssp EECEEEEESCCCCSSC
T ss_pred cEEEEEecccCcccCC
Confidence 8999999987665544
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=2.4e-16 Score=118.91 Aligned_cols=81 Identities=33% Similarity=0.653 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCCccCCeEEEEEeccCC
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 179 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~g~~l~v~~a~~~ 179 (237)
++++|||+|||+++++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|+.|+.+++.+.|+.|.|.++.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 35799999999999999999999999999999999998899999999999999999999999888999999999988764
Q ss_pred C
Q 026534 180 D 180 (237)
Q Consensus 180 ~ 180 (237)
.
T Consensus 82 ~ 82 (167)
T 2cjk_A 82 D 82 (167)
T ss_dssp H
T ss_pred h
Confidence 3
No 171
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-16 Score=110.43 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeEEEEEecc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 177 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~l~v~~a~ 177 (237)
..++|||+|||+.+++++|+++|++||.|..|.|+. +++||||+|.+.++|+.||..+ ..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998875 5789999999999999999754 48999999999987
Q ss_pred CCC
Q 026534 178 PLD 180 (237)
Q Consensus 178 ~~~ 180 (237)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 172
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=6.9e-16 Score=119.41 Aligned_cols=85 Identities=34% Similarity=0.560 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-CCccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~g~~l~v~~a 176 (237)
....++|||+|||+++++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|++||.. .+.|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 45678999999999999999999999999999999999988999999999999999999999974 44899999999998
Q ss_pred cCCCCC
Q 026534 177 TPLDDA 182 (237)
Q Consensus 177 ~~~~~~ 182 (237)
.++...
T Consensus 90 ~~~~~~ 95 (196)
T 1l3k_A 90 VSREDS 95 (196)
T ss_dssp CC----
T ss_pred cCcccc
Confidence 876544
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=1e-15 Score=115.26 Aligned_cols=81 Identities=22% Similarity=0.412 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEeccC
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATP 178 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~a~~ 178 (237)
.++|||+|||+++++++|+++|+.||.|..|.++.+..++.+++||||+|.+.++|+.|+. +...+.++.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999998899999999999999999999996 45589999999999987
Q ss_pred CCC
Q 026534 179 LDD 181 (237)
Q Consensus 179 ~~~ 181 (237)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 174
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=8.3e-16 Score=115.98 Aligned_cols=83 Identities=23% Similarity=0.391 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEecc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 177 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~a~ 177 (237)
+.++|||+|||+++++++|+++|++||.|..|.++.+..++.+++||||+|.+.++|+.|+. +...+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35899999999999999999999999999999999998899999999999999999999996 4558999999999998
Q ss_pred CCCCC
Q 026534 178 PLDDA 182 (237)
Q Consensus 178 ~~~~~ 182 (237)
+....
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 175
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.4e-16 Score=111.13 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=66.8
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcC----HHH----HHHHHh----cCCc
Q 026534 102 KKIFVGRL----PQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE----EVV----ADRVSR----RSHE 165 (237)
Q Consensus 102 ~~l~v~~l----p~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~----~~~----a~~a~~----~~~~ 165 (237)
.+|||+|| |+.+++.+|+++|++||+|..|.++.|+.|+.++|||||+|.+ +++ |.+|+. +...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 677776 3449
Q ss_pred cCCeEEEEEecc
Q 026534 166 ICGQQVAIDSAT 177 (237)
Q Consensus 166 ~~g~~l~v~~a~ 177 (237)
|.|+.|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 176
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=1.3e-15 Score=113.85 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCC--eEEEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG--QQVAI 173 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g--~~l~v 173 (237)
.....+|||+||++.+++++|+++|++||.|+.|.|..+. +++||||+|.+.++|+.|+..++ .|.+ +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3445678999999999999999999999999999987542 57899999999999999998665 7865 99999
Q ss_pred EeccCCCC
Q 026534 174 DSATPLDD 181 (237)
Q Consensus 174 ~~a~~~~~ 181 (237)
++++++..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99998743
No 177
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=117.90 Aligned_cols=86 Identities=17% Similarity=0.274 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEE--eecC---CCCCCCcceEEEEEcCHHHHHHHHhcC--CccCCeE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVY--VPKD---PKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQ 170 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~--v~~~---~~~~~~~g~afv~f~~~~~a~~a~~~~--~~~~g~~ 170 (237)
..+.++|||+|||+.+++++|+++|++||.|..|. ++.+ ..++++++||||+|.+.++|.+||..+ ..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678999999999999999999999999887641 1111 246789999999999999999999754 4899999
Q ss_pred EEEEeccCCCCCC
Q 026534 171 VAIDSATPLDDAG 183 (237)
Q Consensus 171 l~v~~a~~~~~~~ 183 (237)
|.|.++.+..++.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999998765443
No 178
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.5e-15 Score=99.74 Aligned_cols=75 Identities=17% Similarity=0.348 Sum_probs=63.6
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHhcCC-cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeE
Q 026534 99 RIGKK-IFVGRLPQEATAED----LRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ 170 (237)
Q Consensus 99 ~~~~~-l~v~~lp~~~~~~~----l~~~F~~~G-~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~ 170 (237)
.+..+ |||+|||+.+++++ |+++|++|| .|.+| ++ |+|||+|.+.++|++|+++++ .|.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34566 99999999999988 558999995 99877 22 899999999999999997554 999999
Q ss_pred EEEEeccCCCCCC
Q 026534 171 VAIDSATPLDDAG 183 (237)
Q Consensus 171 l~v~~a~~~~~~~ 183 (237)
|+|.+|+.+.+.-
T Consensus 76 i~v~~A~~~sd~~ 88 (96)
T 2diu_A 76 IIVSFTPKNRELC 88 (96)
T ss_dssp CEEESSCCSCCCC
T ss_pred EEEEecCCCccee
Confidence 9999998876543
No 179
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.2e-14 Score=112.54 Aligned_cols=77 Identities=16% Similarity=0.348 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcC-CccCCeEEEEEeccC
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATP 178 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~-~~~~g~~l~v~~a~~ 178 (237)
.++|||+|||+++++++|+++|++||.|..|+|+.+. ++.++|||||+|.+.++|++||... ..|.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999985 5889999999999999999999754 489999999998764
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=7.6e-15 Score=105.19 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcce-EEEEEcCHHHHHHHHhcCC--ccCC--eEEEEEe
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGF-GFVTFAEEVVADRVSRRSH--EICG--QQVAIDS 175 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~-afv~f~~~~~a~~a~~~~~--~~~g--~~l~v~~ 175 (237)
...|||+||++.+++++|+++|++||.|+.|.|+.. .|| |||+|.+.++|..|+..++ .|.+ +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345689999999999999999999999999998652 276 9999999999999997544 7877 6899999
Q ss_pred ccCCCC
Q 026534 176 ATPLDD 181 (237)
Q Consensus 176 a~~~~~ 181 (237)
|+++.-
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 987753
No 181
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.61 E-value=2.2e-15 Score=108.48 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcce-EEEEEcCHHHHHHHHhcCC--ccCC--eEEEE
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGF-GFVTFAEEVVADRVSRRSH--EICG--QQVAI 173 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~-afv~f~~~~~a~~a~~~~~--~~~g--~~l~v 173 (237)
.....|||+||++.+|+++|+++|++||.|..|.|+.+ .+++ |||+|.+.++|+.|+..++ .|.+ +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34567889999999999999999999999999988764 4677 9999999999999997544 8877 89999
Q ss_pred EeccCCC
Q 026534 174 DSATPLD 180 (237)
Q Consensus 174 ~~a~~~~ 180 (237)
.+++++.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 182
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.3e-15 Score=102.99 Aligned_cols=73 Identities=18% Similarity=0.305 Sum_probs=65.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~ 177 (237)
...+|||+|||+++++++|+++|++| .|..|.|. ++++||||+|.+.++|++|+..++ .+.|+.|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999884 478999999999999999997555 8999999999986
Q ss_pred CC
Q 026534 178 PL 179 (237)
Q Consensus 178 ~~ 179 (237)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 183
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=5.4e-15 Score=115.65 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=68.6
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEec
Q 026534 100 IGKKIFVGRLP-QEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 176 (237)
Q Consensus 100 ~~~~l~v~~lp-~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~a 176 (237)
++++|||+||| +.+++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|+.||.. ...|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999876 579999999999999999964 55999999999998
Q ss_pred cCCC
Q 026534 177 TPLD 180 (237)
Q Consensus 177 ~~~~ 180 (237)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 184
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7.9e-15 Score=110.19 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=70.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEeccCC
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATPL 179 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~a~~~ 179 (237)
++|||+|||.++++++|+++|++||.|..|.|+.+. ++++++||||+|.+.++|+.|+. +...+.++.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999985 46799999999999999999996 445899999999998766
Q ss_pred CC
Q 026534 180 DD 181 (237)
Q Consensus 180 ~~ 181 (237)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=6.5e-15 Score=115.60 Aligned_cols=81 Identities=22% Similarity=0.433 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEecc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSAT 177 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~a~ 177 (237)
..++|||+|||.++++++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++||.. ...|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 357999999999999999999999999999999999988999999999999999999999974 458999999998876
Q ss_pred CCC
Q 026534 178 PLD 180 (237)
Q Consensus 178 ~~~ 180 (237)
+..
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 553
No 186
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=8.4e-15 Score=98.61 Aligned_cols=70 Identities=23% Similarity=0.448 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC----C-------cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--c
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E 165 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~----G-------~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~ 165 (237)
....+|||+|||+++++++|+++|++| | .|..+.+..+ ++||||+|.+.++|++|+ .++ .
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 8999998764 789999999999999999 554 8
Q ss_pred cCCeEEEEEe
Q 026534 166 ICGQQVAIDS 175 (237)
Q Consensus 166 ~~g~~l~v~~ 175 (237)
|.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 187
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=7.5e-15 Score=105.22 Aligned_cols=78 Identities=26% Similarity=0.350 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l~v~~ 175 (237)
....++|||+|| ++++++|+++|++||.|..|.|. .+++||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999996 69999999999999999999886 3689999999999999999964 4589999999999
Q ss_pred ccCCCCCC
Q 026534 176 ATPLDDAG 183 (237)
Q Consensus 176 a~~~~~~~ 183 (237)
+.++....
T Consensus 108 a~~~~~~~ 115 (121)
T 2bz2_A 108 ARKQPMLD 115 (121)
T ss_dssp CCSSCC--
T ss_pred eCCCCCCC
Confidence 98875543
No 188
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.8e-14 Score=95.73 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=67.1
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCCccCCeEEEE
Q 026534 101 GKKIFVGRLP-------QEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAI 173 (237)
Q Consensus 101 ~~~l~v~~lp-------~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~g~~l~v 173 (237)
..+|-|.-.. ..+++++|+++|++||.|..|.|+. +++|||||+|.+.++|+.||..++.+.+++|+|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V 84 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKI 84 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEE
Confidence 4567665443 4589999999999999999999973 488999999999999999999888899999999
Q ss_pred EeccCCCCCCC
Q 026534 174 DSATPLDDAGP 184 (237)
Q Consensus 174 ~~a~~~~~~~~ 184 (237)
.++.++.....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T 2d9o_A 85 SWLEGQPQDAS 95 (100)
T ss_dssp ECSSCCCCCCS
T ss_pred EEccCCCCCCC
Confidence 99987765443
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=3.1e-14 Score=99.31 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhcCCcEEEEEeecCCCC-CCCcceEEEEEcCHHHHHHHHhcCC--ccCCe
Q 026534 98 QRIGKKIFVGRLPQ-----EATAEDLRRYFSRFGRILDVYVPKDPKR-TGHRGFGFVTFAEEVVADRVSRRSH--EICGQ 169 (237)
Q Consensus 98 ~~~~~~l~v~~lp~-----~~~~~~l~~~F~~~G~i~~~~v~~~~~~-~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~ 169 (237)
..++.+|+|.||.. +.++++|+++|++||.|..|.|+.++.+ ++++|++||+|.+.++|.+|+..++ .|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999963 2478999999999999999999988643 6789999999999999999997544 99999
Q ss_pred EEEEEeccC
Q 026534 170 QVAIDSATP 178 (237)
Q Consensus 170 ~l~v~~a~~ 178 (237)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=1.7e-14 Score=109.36 Aligned_cols=82 Identities=24% Similarity=0.470 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCC--CCcceEEEEEcCHHHHHHHHhcCC--ccC---CeEEE
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRT--GHRGFGFVTFAEEVVADRVSRRSH--EIC---GQQVA 172 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~--~~~g~afv~f~~~~~a~~a~~~~~--~~~---g~~l~ 172 (237)
...+|||+|||+++++++|+++|++||.|..|.|+.+..++ ++++||||+|.+.++|++|+..++ .+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35799999999999999999999999999999999998776 789999999999999999986543 333 67788
Q ss_pred EEeccCCCC
Q 026534 173 IDSATPLDD 181 (237)
Q Consensus 173 v~~a~~~~~ 181 (237)
+.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888776544
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.53 E-value=5.2e-14 Score=115.15 Aligned_cols=80 Identities=28% Similarity=0.463 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEE
Q 026534 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 171 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~----~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l 171 (237)
..+.++|||+|||+++++++|+ ++|++||.|..|.|.. ++++++||||+|.+.++|++||..++ .|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 5568999999999999999977 8999999999998876 57789999999999999999996544 8999999
Q ss_pred EEEeccCCC
Q 026534 172 AIDSATPLD 180 (237)
Q Consensus 172 ~v~~a~~~~ 180 (237)
+|.++.++.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997655
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.4e-14 Score=113.76 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--cc
Q 026534 98 QRIGKKIFVGRLPQEA---------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 166 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~---------~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~ 166 (237)
.....+|||+||+..+ ++++|+++|++||.|+.|.|+. +++||||+|.+.++|+.|+..++ .|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 7999999999999999999986 57999999999999999987544 66
Q ss_pred ------------CCeEEEEEeccCCCCC
Q 026534 167 ------------CGQQVAIDSATPLDDA 182 (237)
Q Consensus 167 ------------~g~~l~v~~a~~~~~~ 182 (237)
.|+.|.|.||.+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eccccccccccCCCCEEEEEEccCCCCH
Confidence 7999999999876543
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=6.7e-14 Score=111.23 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEE
Q 026534 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 174 (237)
Q Consensus 98 ~~~~~~l~v~~lp~-~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~ 174 (237)
..+.++|||+|||+ ++++++|+++|++||.|..|.|+.+. ++||||+|.+.++|++|+. +...|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999998873 7899999999999999996 4558999999999
Q ss_pred eccCCC
Q 026534 175 SATPLD 180 (237)
Q Consensus 175 ~a~~~~ 180 (237)
++.++.
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 998664
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.9e-13 Score=94.91 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--
Q 026534 98 QRIGKKIFVGRLPQEAT-----------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-- 164 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~-----------~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-- 164 (237)
..++++|+|.||..... +++|+++|++||.|..|.| .+. .++|||||+|.+.++|++|+..++
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45688999999944432 6899999999999999966 443 278999999999999999997655
Q ss_pred ccCCeEEEEEeccCCCCCC
Q 026534 165 EICGQQVAIDSATPLDDAG 183 (237)
Q Consensus 165 ~~~g~~l~v~~a~~~~~~~ 183 (237)
.|.|+.|.|.++.++..-.
T Consensus 88 ~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp EETTEECEEEECCSCCCSS
T ss_pred EECCcEEEEEEeCCCCCcc
Confidence 8999999999998876543
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.46 E-value=2.7e-14 Score=108.52 Aligned_cols=84 Identities=17% Similarity=0.307 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCeEEEEEec
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~~l~v~~a 176 (237)
....++|||+|||+++++++|+++|..||.+.. .++.+..++.+++||||+|.+.++|++||. +...|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 566789999999999999999999999997655 344455678899999999999999999995 233899999999999
Q ss_pred cCCCCC
Q 026534 177 TPLDDA 182 (237)
Q Consensus 177 ~~~~~~ 182 (237)
.++...
T Consensus 89 ~~~~~~ 94 (175)
T 1fje_B 89 KGRDSK 94 (175)
T ss_dssp CCSSCS
T ss_pred CCcccc
Confidence 876543
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=106.38 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=68.7
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEecc
Q 026534 101 GKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 177 (237)
Q Consensus 101 ~~~l~v~~lp~-~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~a~ 177 (237)
+++|||+|||+ ++++++|+++|++||.|..|.|+.+. ++||||+|.+.++|+.|+. +...|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998873 7899999999999999996 4458999999999998
Q ss_pred CCCC
Q 026534 178 PLDD 181 (237)
Q Consensus 178 ~~~~ 181 (237)
++..
T Consensus 78 ~~~~ 81 (198)
T 1qm9_A 78 HQNV 81 (198)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 7643
No 197
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.43 E-value=6.4e-14 Score=99.46 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=39.9
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
++|+ +.+||||||+|.+.++|++|| ++++.|+|++|.|.++.++..
T Consensus 38 ~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 38 VCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp EEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred eecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 4554 458999999999999999999 789999999999999887543
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.42 E-value=5.4e-13 Score=108.06 Aligned_cols=75 Identities=29% Similarity=0.582 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l~v~~ 175 (237)
....++|||+|||+++|+++|+++|++||.|..|.|.. +++||||+|.+.++|..|+. +...|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 45668999999999999999999999999999999965 47899999999999999986 45589999999999
Q ss_pred ccC
Q 026534 176 ATP 178 (237)
Q Consensus 176 a~~ 178 (237)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=1.3e-12 Score=98.66 Aligned_cols=76 Identities=20% Similarity=0.397 Sum_probs=64.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC----C-------cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccC
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEIC 167 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~----G-------~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~ 167 (237)
..++|||+|||+++++++|+++|++| | .|..+.+.. +++||||+|.+.++|++|+. +...+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 45799999999999999999999999 6 777777754 47999999999999999993 334899
Q ss_pred CeEEEEEeccCCCC
Q 026534 168 GQQVAIDSATPLDD 181 (237)
Q Consensus 168 g~~l~v~~a~~~~~ 181 (237)
|+.|.|.++.+...
T Consensus 77 g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP 90 (172)
T ss_dssp TEECEEECCSSCCC
T ss_pred CceeeecCCcccCC
Confidence 99999998776543
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=1.1e-12 Score=91.44 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=67.1
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhcCCcEEEEEeecCCCC--CCCcceEEEEEcCHHHHHHHHhcCC--
Q 026534 99 RIGKKIFVGRL--PQEAT--------AEDLRRYFSRFGRILDVYVPKDPKR--TGHRGFGFVTFAEEVVADRVSRRSH-- 164 (237)
Q Consensus 99 ~~~~~l~v~~l--p~~~~--------~~~l~~~F~~~G~i~~~~v~~~~~~--~~~~g~afv~f~~~~~a~~a~~~~~-- 164 (237)
.+++.|.|.|+ |..+. +++|+++|++||.|..|.|+.+..+ ++++|++||+|.+.++|.+|+..++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 33443 4799999999999999999988654 3679999999999999999997554
Q ss_pred ccCCeEEEEEeccC
Q 026534 165 EICGQQVAIDSATP 178 (237)
Q Consensus 165 ~~~g~~l~v~~a~~ 178 (237)
.+.|+.|.|.++.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=2e-12 Score=99.97 Aligned_cols=75 Identities=20% Similarity=0.420 Sum_probs=63.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC----C-------cEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--cc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 166 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~----G-------~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~ 166 (237)
..++|||+|||+++++++|+++|++| | .|..+.+.. +++||||+|.+.++|++|| .++ .|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~------~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET------TTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC------CCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 566666643 5899999999999999999 444 89
Q ss_pred CCeEEEEEeccCCCC
Q 026534 167 CGQQVAIDSATPLDD 181 (237)
Q Consensus 167 ~g~~l~v~~a~~~~~ 181 (237)
.|+.|.|.++.+...
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQP 90 (198)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred cCceEEEeCCCCCCC
Confidence 999999999876643
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.35 E-value=3.3e-13 Score=93.93 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=59.9
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc--CCccCCeEE
Q 026534 106 VGRLPQEATAEDLRRYF------------SRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQV 171 (237)
Q Consensus 106 v~~lp~~~~~~~l~~~F------------~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~g~~l 171 (237)
+.+||+.+++++|++.| ++||.|..|.|+.+. +++++|||||+|.+.++|++|+.. +..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777888888777666 999999999999884 478899999999999999999975 448999999
Q ss_pred EEEec
Q 026534 172 AIDSA 176 (237)
Q Consensus 172 ~v~~a 176 (237)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99885
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=2.5e-12 Score=91.42 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHHHhcCCcEEEEEeecCCC----CCCCcceEEEEEcCHHHHHHHHhcCC--ccCC
Q 026534 100 IGKKIFVGRLPQ--E---ATAEDLRRYFSRFGRILDVYVPKDPK----RTGHRGFGFVTFAEEVVADRVSRRSH--EICG 168 (237)
Q Consensus 100 ~~~~l~v~~lp~--~---~~~~~l~~~F~~~G~i~~~~v~~~~~----~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g 168 (237)
++++|+|.|+-. + -.+++|+++|++||.|..|.|+.+.. +++++|++||+|.+.++|.+|+..++ .|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999832 2 24789999999999999999998854 35678999999999999999997554 9999
Q ss_pred eEEEEEecc
Q 026534 169 QQVAIDSAT 177 (237)
Q Consensus 169 ~~l~v~~a~ 177 (237)
+.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=5.3e-12 Score=105.39 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=62.5
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--cc---CCe-
Q 026534 98 QRIGKKIFVGR--LPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQ- 169 (237)
Q Consensus 98 ~~~~~~l~v~~--lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~---~g~- 169 (237)
..++.+|||+| |++.+|+++|+++|++||.|..|.+.. +++||||+|.+.++|++|++.++ ++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56789999999 588999999999999999999988754 47999999999999999998665 33 345
Q ss_pred -EEEEEecc
Q 026534 170 -QVAIDSAT 177 (237)
Q Consensus 170 -~l~v~~a~ 177 (237)
+|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67778774
No 205
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.28 E-value=6e-12 Score=85.35 Aligned_cols=49 Identities=20% Similarity=0.417 Sum_probs=44.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--h-ccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--V-DTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~-~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|+++||||||+|.+.++|++|| + ++..|+|++|.|.++.+++.
T Consensus 34 i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 34 LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 5789999999999999999999999999 3 35689999999999988754
No 206
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.24 E-value=5.4e-12 Score=86.99 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=43.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~ 46 (237)
|++|+.||++||||||+|.+.++|++|| +++..|+|++|.|.+|.|
T Consensus 51 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 4689999999999999999999999999 789999999999999875
No 207
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.24 E-value=9.2e-12 Score=85.09 Aligned_cols=46 Identities=28% Similarity=0.520 Sum_probs=41.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccc----eeCCcEEEEeecCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTH----ELGGSTVVVDRATP 46 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~----~~~gr~i~v~~a~~ 46 (237)
|++|+.|++|||||||+|.+.++|++|| +++. .|+||+|.|.+|.+
T Consensus 43 i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 43 LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 6799999999999999999999999999 5554 69999999999864
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=9.2e-11 Score=83.03 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=64.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcC-HHHHHHHHhcCC----ccCCeEE
Q 026534 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSRRSH----EICGQQV 171 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~-~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~-~~~a~~a~~~~~----~~~g~~l 171 (237)
...+..|||+||++. +++++|+++|++||.|.+|.+..+.. .|||+|.+ .++|..|+.+++ .|.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 567899999999999 99999999999999999999988744 59999999 889999887543 7888888
Q ss_pred EEEecc
Q 026534 172 AIDSAT 177 (237)
Q Consensus 172 ~v~~a~ 177 (237)
.++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
No 209
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.17 E-value=9.3e-12 Score=84.17 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=40.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.||++||||||+|.+.++|++|| +++..|+|+.|.|.++.+...
T Consensus 35 i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 35 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 4678899999999999999999999999 789999999999999987643
No 210
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=1.6e-10 Score=81.43 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=62.7
Q ss_pred CCCCCeEEEcCCCCCC----------CHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--c
Q 026534 98 QRIGKKIFVGRLPQEA----------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E 165 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~----------~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~ 165 (237)
..+++.|.|.|+=... .+++|+++|++||.|..|.|.++. ++|++||+|.+.++|.+|+..++ .
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3457789998883321 246889999999999999997653 58999999999999999997544 9
Q ss_pred cCCeEEEEEeccC
Q 026534 166 ICGQQVAIDSATP 178 (237)
Q Consensus 166 ~~g~~l~v~~a~~ 178 (237)
|.|+.|.|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999753
No 211
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.15 E-value=3.1e-11 Score=84.80 Aligned_cols=48 Identities=10% Similarity=0.220 Sum_probs=44.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+.|++|||||||+|.+.++|++|| +++..|+|+.|.|.++....
T Consensus 38 i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 38 ILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred EEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 4689999999999999999999999999 78999999999999986543
No 212
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=9.3e-11 Score=80.56 Aligned_cols=50 Identities=36% Similarity=0.630 Sum_probs=45.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 42 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 42 MIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp ECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCCC
T ss_pred EEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCccc
Confidence 4688999999999999999999999999 7899999999999999877553
No 213
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.3e-10 Score=79.36 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=45.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.+++++|||||+|.+.++|++|| ++++.|+|++|.|.++.++...
T Consensus 38 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 38 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred EEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 4678899999999999999999999999 6899999999999999876543
No 214
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=8.5e-11 Score=81.39 Aligned_cols=50 Identities=24% Similarity=0.494 Sum_probs=45.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.++...
T Consensus 46 i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 46 LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCCC
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCCC
Confidence 4678899999999999999999999999 7899999999999999876543
No 215
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=8.9e-11 Score=81.08 Aligned_cols=50 Identities=26% Similarity=0.571 Sum_probs=45.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.+++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.++...
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 44 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 4678889999999999999999999999 6899999999999999887553
No 216
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.11 E-value=7.9e-11 Score=78.11 Aligned_cols=48 Identities=29% Similarity=0.526 Sum_probs=43.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+.|++++|||||+|.+.++|++|+ +++..|+|+.|.|.++.+++
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 33 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 3568889999999999999999999999 68999999999999998764
No 217
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.11 E-value=2.5e-11 Score=83.73 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=44.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCC-cEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGG-STVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~g-r~i~v~~a~~~~ 48 (237)
|++|+.|+++||||||+|.+.++|++|| +++..|.| +.|.|.++.++.
T Consensus 44 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 44 FPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHHH
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchhh
Confidence 6789999999999999999999999999 78999999 999999987643
No 218
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.1e-10 Score=80.70 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=46.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHHhccceeCCcEEEEeecCCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF 51 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~a~~~~~~~ 51 (237)
|++|+.|++++|||||+|.+.++|++||.+++.|+|+.|.|.++.++....
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 47 VKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQD 97 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTTCCCC
T ss_pred EEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCCCcCC
Confidence 467888999999999999999999999988899999999999998876543
No 219
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=2.2e-10 Score=78.67 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=45.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.+++++|||||+|.+.++|++|| ++++.|+|++|.|.++.++...
T Consensus 40 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 40 YPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp CCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence 5788889999999999999999999999 7899999999999999887553
No 220
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.8e-10 Score=79.58 Aligned_cols=50 Identities=30% Similarity=0.521 Sum_probs=45.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 44 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp CCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 5788899999999999999999999999 6899999999999999877543
No 221
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.09 E-value=2.5e-10 Score=80.04 Aligned_cols=51 Identities=16% Similarity=0.349 Sum_probs=46.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hc------cceeCCcEEEEeecCCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VD------THELGGSTVVVDRATPKEDDF 51 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~------~~~~~gr~i~v~~a~~~~~~~ 51 (237)
|++|+.|++++|||||+|.+.++|++|| ++ ++.|+|+.|.|.++.++....
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 47 VVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp CCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCCC
T ss_pred EEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccCC
Confidence 5789999999999999999999999999 67 899999999999998876543
No 222
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.09 E-value=8.5e-11 Score=78.68 Aligned_cols=47 Identities=30% Similarity=0.473 Sum_probs=41.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
|++|+.|++++|||||+|.+.++|++|+ ++++.|+|+.|.|.++.++
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 38 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 3578889999999999999999999999 6899999999999999865
No 223
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.5e-10 Score=79.15 Aligned_cols=50 Identities=24% Similarity=0.552 Sum_probs=45.5
Q ss_pred CCCCCCC-CCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGS-KAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~t-g~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.| ++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.++...
T Consensus 46 i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 46 LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp CCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCCC
T ss_pred EecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCCCC
Confidence 5788888 999999999999999999999 7899999999999999887654
No 224
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=2e-10 Score=79.71 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=45.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 47 MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp CCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred EEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 5788889999999999999999999999 6899999999999999887653
No 225
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=2.5e-10 Score=80.32 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=45.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.++...
T Consensus 55 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 55 IYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred EEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 5778899999999999999999999999 6899999999999999876543
No 226
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.08 E-value=1.1e-10 Score=75.86 Aligned_cols=44 Identities=36% Similarity=0.631 Sum_probs=40.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeec
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a 44 (237)
|++|+.|++++|||||+|.+.++|++|+ ++++.|+|++|.|++|
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 31 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5678889999999999999999999999 8899999999999875
No 227
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.07 E-value=2.5e-10 Score=77.95 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=45.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|+|+.|.|.++.++..
T Consensus 34 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 34 MMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 5788899999999999999999999999 789999999999999987654
No 228
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2e-10 Score=78.18 Aligned_cols=49 Identities=29% Similarity=0.542 Sum_probs=44.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|++|.|.++.++..
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 37 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 4678889999999999999999999999 689999999999999987654
No 229
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.06 E-value=9.5e-11 Score=80.81 Aligned_cols=49 Identities=16% Similarity=0.403 Sum_probs=44.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~ 49 (237)
+++|+.|+++||||||+|.+.++|++|| ++++.|.|+.|.|.++.++..
T Consensus 48 ~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 48 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCCC
Confidence 4678889999999999999999999999 889999999999999987654
No 230
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.8e-10 Score=79.68 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=44.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.+...
T Consensus 45 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 45 IPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR 95 (103)
T ss_dssp CCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCS
T ss_pred EEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCC
Confidence 5788999999999999999999999999 689999999999999987644
No 231
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=2.1e-10 Score=79.40 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=44.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 47 LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 4578889999999999999999999999 689999999999999987654
No 232
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.04 E-value=3.2e-10 Score=79.38 Aligned_cols=50 Identities=30% Similarity=0.531 Sum_probs=44.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.|+++||||||+|.+.++|++|| ..++.|+|+.|.|.++.++...
T Consensus 57 i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 57 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp ECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCCCC
T ss_pred EEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCCCC
Confidence 4688999999999999999999999999 4468999999999999877543
No 233
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=3e-10 Score=80.33 Aligned_cols=51 Identities=35% Similarity=0.580 Sum_probs=45.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDF 51 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~~ 51 (237)
|++|+.|++++|||||+|.+.++|++|| .+++.|+|+.|.|.++.++....
T Consensus 59 i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 59 VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCCC
T ss_pred EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCccCC
Confidence 4678899999999999999999999999 67889999999999998876543
No 234
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.04 E-value=2.4e-10 Score=80.74 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=45.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.++++||||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 57 VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence 4678889999999999999999999999 6899999999999999877543
No 235
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.04 E-value=4.9e-10 Score=79.06 Aligned_cols=50 Identities=28% Similarity=0.435 Sum_probs=45.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.+++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 47 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 4578889999999999999999999999 6899999999999999877654
No 236
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=2.4e-10 Score=78.90 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=45.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.+++++|||||+|.+.++|++|| ++++.|+|++|.|.++.++...
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 44 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 4678899999999999999999999999 6899999999999999876543
No 237
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=1.9e-10 Score=79.30 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=36.9
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
++|||||+|.+.++|++|+ +++..|+|+.|.|.++.++..
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 7999999999999999999 689999999999999987653
No 238
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-09 Score=72.38 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=60.1
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCCe
Q 026534 99 RIGKKIFVGRLP----QEATA----EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQ 169 (237)
Q Consensus 99 ~~~~~l~v~~lp----~~~~~----~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g~ 169 (237)
++..+|+|.-++ .++.. .+|.+.|.+||.|..++|+.+. +||+|.+.++|.+||. ++.++.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 456788887766 23333 6788999999999999998873 8999999999999997 34499999
Q ss_pred EEEEEeccCC
Q 026534 170 QVAIDSATPL 179 (237)
Q Consensus 170 ~l~v~~a~~~ 179 (237)
.|+|..+.|.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998864
No 239
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.03 E-value=2.2e-10 Score=78.86 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=43.7
Q ss_pred CCCCC-CCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQ-GSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~-~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+ .+++++|||||+|.+.++|++|| +++..|+|+.|.|.++.++.
T Consensus 50 i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 50 LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCCSC
T ss_pred EEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccCCC
Confidence 56787 69999999999999999999999 78999999999999998753
No 240
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=1.3e-10 Score=80.50 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=42.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+ |+++||||||+|.+.++|++|| ++++.|+|+.|.|.++.+..
T Consensus 46 i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 46 IEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp EEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCC
Confidence 46787 8999999999999999999999 78899999999999887654
No 241
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.01 E-value=4.1e-10 Score=78.85 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=44.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++.
T Consensus 58 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 58 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 5688999999999999999999999999 68999999999999997654
No 242
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=86.45 Aligned_cols=47 Identities=26% Similarity=0.382 Sum_probs=43.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
|++|+.||++||||||+|.+.++|++|| ++++.|+|+.|.|.++.++
T Consensus 89 i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 89 FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 4689999999999999999999999999 6899999999999999764
No 243
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=2.9e-10 Score=76.77 Aligned_cols=47 Identities=17% Similarity=0.374 Sum_probs=42.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++| .+++++|||||+|.+.++|++|| +++..|+|+.|.|.++.++.
T Consensus 41 i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 41 IVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp EEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSCC
T ss_pred EEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcCC
Confidence 3566 78999999999999999999999 88999999999999998764
No 244
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.5e-10 Score=79.11 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=44.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccce-eCCcEEEEeecCCCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHE-LGGSTVVVDRATPKEDDFR 52 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~-~~gr~i~v~~a~~~~~~~~ 52 (237)
|++|+ |++++|||||+|.+.++|++|| +++.. |+|+.|.|.++.++.....
T Consensus 42 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 42 VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 95 (104)
T ss_dssp EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCCC
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCCC
Confidence 45677 8999999999999999999999 68888 9999999999987765443
No 245
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=7.9e-10 Score=76.88 Aligned_cols=50 Identities=28% Similarity=0.581 Sum_probs=44.9
Q ss_pred CCCC-CCCCCcccEEEEEecCHHHHHHHH--h-ccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKD-QGSKAHRGIGFITFASADSVENLM--V-DTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d-~~tg~skG~aFV~F~~~~~A~~Ai--~-~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++| +.+++++|||||+|.+.++|++|| + +++.|.|+.|.|.++.++...
T Consensus 47 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 47 LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence 4677 789999999999999999999999 6 799999999999999887543
No 246
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.01 E-value=2.3e-10 Score=78.58 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=41.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|.|+.|.|++|.
T Consensus 53 i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 53 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp EEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred EEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 4578899999999999999999999999 78999999999999874
No 247
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=2e-10 Score=81.13 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=42.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+ |+++||||||+|.+.++|++|| ++++.|+|+.|.|.++.++.
T Consensus 48 i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 48 VLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp ECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHH
Confidence 46788 8999999999999999999999 78889999999999997654
No 248
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.00 E-value=3.6e-10 Score=75.21 Aligned_cols=45 Identities=31% Similarity=0.554 Sum_probs=41.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
|++|+.|++++|||||+|.+.++|++|+ +++..|+|+.|.|+++.
T Consensus 39 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 39 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4678899999999999999999999999 78999999999999873
No 249
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=4.2e-10 Score=77.37 Aligned_cols=47 Identities=6% Similarity=0.266 Sum_probs=42.5
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
++|+ +++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 50 ~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 50 VTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred EECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 4567 8999999999999999999999 689999999999999987653
No 250
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.00 E-value=6.9e-10 Score=77.08 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=44.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hcccee---CCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHEL---GGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~---~gr~i~v~~a~~~~~ 49 (237)
|++|+.|+++||||||+|.+.++|++|| +++..+ .|++|.|.++.++..
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 45 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 5788999999999999999999999999 778777 889999999987654
No 251
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.99 E-value=2e-10 Score=83.13 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=44.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccc----eeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTH----ELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~----~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|+++||||||+|.+. +|.+|| +++. .|+|+.|.|.++.++..
T Consensus 57 i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 57 VIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred EEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 688999999999999999999 999999 7888 99999999999987654
No 252
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.99 E-value=2.4e-10 Score=74.21 Aligned_cols=44 Identities=32% Similarity=0.563 Sum_probs=40.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeec
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a 44 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|.|+.|.|++|
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 31 LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred EEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5788999999999999999999999999 7788999999999875
No 253
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=5e-10 Score=76.02 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=41.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|.|++|.|.++.
T Consensus 48 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 48 IMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp ECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 4678899999999999999999999999 68999999999999873
No 254
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.99 E-value=3.5e-10 Score=77.44 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=42.1
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
++|+.+++++|||||+|.+.++|++|| +++..|+|+.|.|+++...
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp EEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 567889999999999999999999999 6889999999999998754
No 255
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.5e-09 Score=75.80 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=42.7
Q ss_pred CCCCCCCcccEEEEEecCHHHHHHHH--hc--cceeCCcEEEEeecCCCCC
Q 026534 3 KDQGSKAHRGIGFITFASADSVENLM--VD--THELGGSTVVVDRATPKED 49 (237)
Q Consensus 3 ~d~~tg~skG~aFV~F~~~~~A~~Ai--~~--~~~~~gr~i~v~~a~~~~~ 49 (237)
+|+.|+++||||||+|.+.++|++|| ++ +..|+|+.|.|.++.++..
T Consensus 44 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 44 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 78899999999999999999999999 54 4899999999999987754
No 256
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=3.8e-10 Score=76.76 Aligned_cols=46 Identities=26% Similarity=0.457 Sum_probs=42.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~ 46 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|+|++|.|.++.+
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 47 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 4578889999999999999999999999 689999999999999864
No 257
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.99 E-value=3e-10 Score=76.03 Aligned_cols=44 Identities=34% Similarity=0.585 Sum_probs=40.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeec
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a 44 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|++|
T Consensus 43 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 43 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred EeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4678899999999999999999999999 6788999999999875
No 258
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=2.6e-10 Score=79.18 Aligned_cols=50 Identities=26% Similarity=0.540 Sum_probs=45.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.|++++|||||+|.+.++|++|| .+++.|+|+.|.|.++.++...
T Consensus 48 i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 48 IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp EEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSCC
T ss_pred EeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCCC
Confidence 4678889999999999999999999999 6888999999999999877643
No 259
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2.6e-10 Score=79.27 Aligned_cols=48 Identities=15% Similarity=0.312 Sum_probs=43.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++.
T Consensus 55 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 55 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 4578899999999999999999999999 68999999999999987653
No 260
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=5.3e-10 Score=78.22 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=41.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~ 47 (237)
|++|+. |++||||||+|.+.++|++|| ++++.|+||.|.|..+.++
T Consensus 47 i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 47 LLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp ECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 467876 999999999999999999999 7899999999999888643
No 261
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.2e-09 Score=75.26 Aligned_cols=48 Identities=21% Similarity=0.522 Sum_probs=42.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++| .+++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.++..
T Consensus 44 ~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 44 VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 3555 67999999999999999999999 689999999999999987654
No 262
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.98 E-value=6.9e-10 Score=80.99 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=45.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.|+++||||||+|.+.++|++|| +++..|.|+.|.|.++.++...
T Consensus 74 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 74 IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 4578889999999999999999999999 6899999999999999877554
No 263
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.98 E-value=3.9e-10 Score=75.71 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=42.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~ 47 (237)
|++|+.|++++|||||+|.+.++|++|+ ++++.|.|+.|.|.++.+.
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 38 ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 3578889999999999999999999999 7899999999999998764
No 264
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=9.7e-10 Score=76.20 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=42.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++| .|++++|||||+|.+.++|++|| .++..|+|+.|.|.++.++.
T Consensus 48 i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 48 LPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp CCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred EEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHH
Confidence 4567 78999999999999999999999 77889999999999987654
No 265
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.97 E-value=1e-09 Score=77.73 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=43.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+ |++++|||||+|.+.++|++|| +++..|+|+.|.|.++.+...
T Consensus 39 i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 39 LIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp EECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred EEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 35677 8999999999999999999999 689999999999999987654
No 266
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.97 E-value=2.9e-10 Score=79.48 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=43.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|+|++|.|.++.++.
T Consensus 58 i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 58 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 3568889999999999999999999999 68999999999999998764
No 267
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.97 E-value=4e-10 Score=76.64 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=40.9
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~ 46 (237)
++|+.+++++|||||+|.+.++|++|| ++++.|+|++|.|.++.+
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred EEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 567889999999999999999999999 689999999999998764
No 268
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.96 E-value=4.4e-10 Score=81.14 Aligned_cols=48 Identities=29% Similarity=0.466 Sum_probs=44.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|+|++|.|.++.++.
T Consensus 78 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 78 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 4678899999999999999999999999 68999999999999998754
No 269
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=2e-09 Score=76.05 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=42.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.++|++|| +++ .|.|+.|.|.++.+...
T Consensus 49 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 49 VITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp ESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTCC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCCC
Confidence 5788999999999999999999999999 455 89999999999976543
No 270
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.96 E-value=1.2e-09 Score=81.49 Aligned_cols=48 Identities=29% Similarity=0.497 Sum_probs=44.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.++.
T Consensus 102 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 102 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp CCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 5789999999999999999999999999 68999999999999998764
No 271
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.95 E-value=7.3e-10 Score=79.46 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=44.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|+|+.|.|.++.++..
T Consensus 54 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 54 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp CCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 5788899999999999999999999999 789999999999999976654
No 272
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=4.8e-10 Score=76.90 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=43.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcE----EEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGST----VVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~----i~v~~a~~~~ 48 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|.|+. |+|.++.+..
T Consensus 42 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 42 IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 4678899999999999999999999999 6899999999 9999997653
No 273
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.93 E-value=1.1e-09 Score=78.35 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=43.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.+..
T Consensus 68 i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 68 ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCCC
T ss_pred EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCCC
Confidence 3567889999999999999999999999 78999999999999987654
No 274
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=5.8e-10 Score=76.35 Aligned_cols=44 Identities=14% Similarity=0.351 Sum_probs=40.1
Q ss_pred CCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 46 t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 46 VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP 91 (98)
T ss_dssp CEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred CcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence 6799999999999999999999 6899999999999999876543
No 275
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.93 E-value=4e-10 Score=75.93 Aligned_cols=48 Identities=27% Similarity=0.547 Sum_probs=40.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.+ |++|+ +++..|+|+.|.|.++.+...
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 33 LIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp ECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred EEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 4688899999999999999999 99999 689999999999999987644
No 276
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=4.7e-10 Score=77.61 Aligned_cols=49 Identities=20% Similarity=0.461 Sum_probs=44.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|.|+.|.|.++.++..
T Consensus 40 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 40 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKN 90 (104)
T ss_dssp EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTH
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccc
Confidence 3567889999999999999999999999 689999999999999987654
No 277
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.92 E-value=1.3e-09 Score=76.43 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=41.4
Q ss_pred CCCCCC---CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 2 PKDQGS---KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 2 ~~d~~t---g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
++|+.+ ++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 51 ~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 51 NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 456654 466799999999999999999 689999999999999988753
No 278
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.4e-09 Score=75.16 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=42.0
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
++| +++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.++...
T Consensus 48 ~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 48 MME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp EEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred EcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence 345 7999999999999999999999 6899999999999999877543
No 279
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=7.3e-10 Score=76.74 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=40.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~ 46 (237)
|++|+. +++||||||+|.+.++|++|| ++++.|+|+.|.|.++..
T Consensus 43 i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 43 MRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp EECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred EEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 467887 999999999999999999999 788999999999998754
No 280
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.91 E-value=5.4e-10 Score=72.89 Aligned_cols=44 Identities=32% Similarity=0.517 Sum_probs=39.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
|++|+.|++++|||||+|.+.++|++|+ ++ +.|+|++|.|++|.
T Consensus 32 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 32 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp EECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred EecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 4678889999999999999999999999 45 89999999999873
No 281
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.91 E-value=1.3e-09 Score=79.32 Aligned_cols=49 Identities=29% Similarity=0.482 Sum_probs=44.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|.|++|.|.++.+...
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 5788899999999999999999999999 689999999999999987543
No 282
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.90 E-value=1.3e-09 Score=81.11 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=44.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.+...
T Consensus 71 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 71 MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 4678899999999999999999999999 689999999999999987654
No 283
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.90 E-value=4.8e-10 Score=81.59 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=41.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~ 47 (237)
|++|+. |++||||||+|.+.++|++|| +++..|+|+.|.|.++.++
T Consensus 79 i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 79 FIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp EEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence 356777 999999999999999999999 8899999999999998654
No 284
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=1e-09 Score=77.31 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=43.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++.
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 57 IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp ECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHHH
T ss_pred EEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCCc
Confidence 4688999999999999999999999999 78999999999999987643
No 285
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.89 E-value=3.9e-10 Score=80.87 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=41.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~ 47 (237)
|++|+. |++||||||+|.+.++|++|| +++..|+||.|.|..+.++
T Consensus 75 i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 75 LPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp CCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred EEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence 578888 999999999999999999999 6678999999999888644
No 286
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3.5e-10 Score=81.04 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=42.6
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~ 48 (237)
+.|..|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++.
T Consensus 58 ~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 58 IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred EEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHH
Confidence 456789999999999999999999999 88999999999999987643
No 287
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.89 E-value=1.7e-09 Score=74.93 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=42.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCC---cEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGG---STVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~g---r~i~v~~a~~~~~~ 50 (237)
|++|+ +++++|||||+|.+.++|++|| +++..|.| +.|.|.++.++...
T Consensus 47 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 47 VLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp EEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred EEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence 34566 7999999999999999999999 68888888 99999999876543
No 288
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.89 E-value=1.2e-09 Score=77.57 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=41.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~ 47 (237)
|++|+. |++||||||+|.+.++|++|| ++++.|+|+.|.|.++..+
T Consensus 52 i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 52 FIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp EEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHH
Confidence 356777 999999999999999999999 8899999999999998654
No 289
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.6e-09 Score=72.85 Aligned_cols=46 Identities=9% Similarity=0.159 Sum_probs=40.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.+ ||||||+|.+.++|++|| +++..|+|++|.|.++.+...
T Consensus 45 i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 45 LSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp ECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred EEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 4567776 899999999999999999 789999999999999977643
No 290
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.89 E-value=1.5e-09 Score=75.35 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=40.2
Q ss_pred CCCCC-CCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCC
Q 026534 2 PKDQG-SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 2 ~~d~~-tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~ 46 (237)
++|+. +++++|||||+|.+.++|.+|+ +++.+|.||.|.|.++.+
T Consensus 46 ~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 46 FEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp EECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred ecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 45655 4799999999999999999999 899999999999999864
No 291
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.89 E-value=3.3e-10 Score=79.94 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=37.2
Q ss_pred CCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
++.++|||||+|.+.++|++|| +++..|+|+.|.|.++.++
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 3567999999999999999999 7899999999999999754
No 292
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.89 E-value=1.4e-09 Score=75.65 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=40.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
|++|+ +++++|||||+|.+.++|++|| +++..|+|+.|.|+++.
T Consensus 61 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 61 VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 35677 8999999999999999999999 68999999999999875
No 293
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.88 E-value=2.8e-09 Score=76.20 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=43.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+ +++++|||||+|.+.++|++|| +++..|+|+.|.|.++.+...
T Consensus 67 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 67 VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp EECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 35677 8999999999999999999999 689999999999999987654
No 294
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.88 E-value=7.3e-10 Score=77.26 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=42.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~ 48 (237)
|++|+. |+++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++.
T Consensus 46 i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 46 FLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp CCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHHH
T ss_pred EEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHHH
Confidence 567888 999999999999999999999 88899999999999987643
No 295
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.88 E-value=1.5e-09 Score=72.55 Aligned_cols=47 Identities=17% Similarity=0.439 Sum_probs=41.5
Q ss_pred CCCCCCCCC-cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKA-HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~-skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
|++|+.|+. ++|||||+|.+.++|++|+ +++..|+|+.|.|.++.+.
T Consensus 36 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 36 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 456676666 9999999999999999999 6899999999999998764
No 296
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.87 E-value=1.1e-09 Score=77.62 Aligned_cols=44 Identities=18% Similarity=0.380 Sum_probs=41.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeec
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a 44 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|+|+.|+|+++
T Consensus 72 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 72 VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp ECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4678899999999999999999999999 6899999999999886
No 297
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.87 E-value=7.2e-10 Score=87.88 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=43.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
|++|+.|+++||||||+|.+.++|++|| ++++.|+|+.|.|.++.+.
T Consensus 102 i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 102 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 5789999999999999999999999999 7899999999999999754
No 298
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=4.5e-10 Score=74.81 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=40.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|+|+.|+|.++.
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 37 AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4678889999999999999999999999 68999999999887654
No 299
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.37 E-value=2.6e-10 Score=80.72 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=45.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|.|+.|.|.++.++...
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 47 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 4678889999999999999999999999 6899999999999999877554
No 300
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.86 E-value=2.2e-09 Score=74.47 Aligned_cols=43 Identities=12% Similarity=0.296 Sum_probs=38.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeec
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a 44 (237)
|++|+. +++||||||+|.+.++|++|+ +++..|+||.|.|.++
T Consensus 59 i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 59 VCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp ECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 345554 799999999999999999999 7999999999999875
No 301
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=5.1e-09 Score=72.23 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=40.4
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
++|+. .+||||||+|.+.++|++|| ++++.|.|+.|.|.++.++...
T Consensus 48 ~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 48 ITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp ECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred EecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 45544 47999999999999999999 7899999999999999876543
No 302
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.86 E-value=3e-09 Score=70.67 Aligned_cols=38 Identities=11% Similarity=0.338 Sum_probs=35.3
Q ss_pred CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
..+||||||+|.+.++|++|| +|+..+.|++|+|+.|.
T Consensus 40 ~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 40 YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 358999999999999999999 89999999999999984
No 303
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=2.5e-09 Score=75.35 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=41.8
Q ss_pred CCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 4 DQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 4 d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
+..+++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 60 ~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 60 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp EEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred EcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 3448999999999999999999999 6899999999999999876543
No 304
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=6.9e-09 Score=72.93 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=40.8
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
++|+ +++++|||||+|.+.++|++|| ++++.|+|+.|.|.++....
T Consensus 48 ~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 95 (114)
T 2do0_A 48 LEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 95 (114)
T ss_dssp EECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCC
T ss_pred EECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCC
Confidence 4566 5999999999999999999999 68999999999999987543
No 305
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.83 E-value=2.2e-09 Score=72.89 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=39.6
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~ 46 (237)
++|+. ++++|||||+|.+.++|++|| ++++.|+|++|.|.++..
T Consensus 49 ~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 49 CKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp EECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 45665 999999999999999999999 689999999999998863
No 306
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.82 E-value=1e-09 Score=80.12 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=43.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+. +++||||||+|.+.++|++|| +++..|+|+.|.|..+.+...
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 578887 999999999999999999999 788899999999998876543
No 307
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.82 E-value=3.5e-09 Score=73.45 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=40.0
Q ss_pred CCCCCcccEEEEEecCHHHHHHHH--hccceeCCc-EEEEeecCCCC
Q 026534 5 QGSKAHRGIGFITFASADSVENLM--VDTHELGGS-TVVVDRATPKE 48 (237)
Q Consensus 5 ~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr-~i~v~~a~~~~ 48 (237)
+.||++||||||+|.+.++|++|| +++..|+|+ .|.|.++....
T Consensus 55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 468999999999999999999999 689999998 99999987654
No 308
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=7.7e-10 Score=79.06 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=40.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~ 47 (237)
|++| .||++||||||+|.+.++|++|| ++++.|.+|.|.|..+.++
T Consensus 59 i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 59 FVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp EEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEECHH
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHH
Confidence 3466 48999999999999999999999 7788999999999888654
No 309
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.81 E-value=6.5e-09 Score=72.16 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=40.5
Q ss_pred CCCCCCC--CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCC
Q 026534 1 MPKDQGS--KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 1 ~~~d~~t--g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~ 46 (237)
|++|+.+ ++++|||||+|.+.++|++|+ |++.+++||.|.|.++..
T Consensus 47 i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 47 IPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp CCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred EeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 4667664 478999999999999999999 899999999999998754
No 310
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.80 E-value=4.2e-09 Score=75.66 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=40.2
Q ss_pred CCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 6 ~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
.|+++||||||+|.+.++|++|| +++..|.|++|.|.++.++..
T Consensus 67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 47899999999999999999999 789999999999999987643
No 311
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=9.5e-09 Score=70.86 Aligned_cols=47 Identities=19% Similarity=0.375 Sum_probs=40.5
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
++|+. .++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 48 ~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 48 IFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp ECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred EecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 44544 38999999999999999999 6899999999999999877543
No 312
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.80 E-value=3e-09 Score=79.99 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=43.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.++|++|| +++..|.|+.|.|.++.++..
T Consensus 104 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 104 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 4578889999999999999999999999 789999999999999976543
No 313
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.80 E-value=6.8e-09 Score=70.62 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=40.4
Q ss_pred CCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 5 QGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 5 ~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
..+++++|||||+|.+.++|++|| +++..|+|+.|.|.++.++..
T Consensus 47 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 47 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 357899999999999999999999 688999999999999987643
No 314
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=8.9e-09 Score=68.81 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=59.8
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccC
Q 026534 98 QRIGKKIFVGRLPQE-----ATA----EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEIC 167 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~-----~~~----~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~ 167 (237)
-++..+|+|.-++.+ +.. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||. ++.++.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 456789999888743 322 5688999999999999998873 9999999999999997 344999
Q ss_pred CeEEEEEeccC
Q 026534 168 GQQVAIDSATP 178 (237)
Q Consensus 168 g~~l~v~~a~~ 178 (237)
|+.|+|++..|
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998653
No 315
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.9e-08 Score=70.10 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=39.5
Q ss_pred CCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 6 ~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
.++.++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 35678999999999999999999 789999999999999987654
No 316
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=8.1e-09 Score=72.58 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=40.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hcccee--------CCcEEEEeecCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHEL--------GGSTVVVDRATPK 47 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~--------~gr~i~v~~a~~~ 47 (237)
|++|+ +++++|||||+|.+.++|++|| +++..| .+++|.|.++.+.
T Consensus 57 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 57 ILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp EEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 35677 8999999999999999999999 788888 5788999998764
No 317
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.74 E-value=2e-09 Score=74.20 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=42.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHHhccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+ ++++||||||+|.+.++|++||.+++.|+|+.|.|.++.++..
T Consensus 41 i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 41 IITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp EEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEECC-
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcCcc
Confidence 35677 8999999999999999999999988899999999999876643
No 318
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.72 E-value=1.1e-08 Score=68.96 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=39.8
Q ss_pred CCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 6 ~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
.+++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.+...
T Consensus 43 ~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 43 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 37899999999999999999999 689999999999999987643
No 319
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.71 E-value=5.8e-09 Score=74.08 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=37.1
Q ss_pred CCCCCCCCCcccEEEEEecC----HHH----HHHHHh----ccceeCCcEEEEeecC
Q 026534 1 MPKDQGSKAHRGIGFITFAS----ADS----VENLMV----DTHELGGSTVVVDRAT 45 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~----~~~----A~~Ai~----~~~~~~gr~i~v~~a~ 45 (237)
|+.|+.||+|+|||||+|.| +++ |.+||. ++..|+|++|+|..-.
T Consensus 38 li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 38 AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 47899999999999999996 433 788874 7889999999998754
No 320
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.1e-08 Score=69.89 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=38.6
Q ss_pred CCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
+++++|||||+|.+.++|++|| +++..|+|+.|.|.++.++.
T Consensus 52 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 52 WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 5688999999999999999999 78999999999999998764
No 321
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.70 E-value=7.1e-09 Score=68.31 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=34.1
Q ss_pred CCCCCcccEEEEEecCHHHHHHHH--hccceeCCc-EEEE
Q 026534 5 QGSKAHRGIGFITFASADSVENLM--VDTHELGGS-TVVV 41 (237)
Q Consensus 5 ~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr-~i~v 41 (237)
+.||++||||||+|.+.++|++|| +++..|+|+ +|.|
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 568999999999999999999999 689999999 8876
No 322
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.70 E-value=7.5e-09 Score=75.83 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=40.9
Q ss_pred CCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 5 QGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 5 ~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
..|++++|||||+|.+.++|.+|| +++..|.|+.|.|.++.+...
T Consensus 86 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 86 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 468999999999999999999999 789999999999999976543
No 323
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.70 E-value=1.9e-08 Score=70.41 Aligned_cols=40 Identities=23% Similarity=0.464 Sum_probs=36.3
Q ss_pred CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
++++|||||+|.+.++|++|| +++.+|+|+.|.|.++...
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 469999999999999999999 7899999999999998654
No 324
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=3.6e-08 Score=67.19 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=38.1
Q ss_pred CCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
+++||||||+|.+.++|++|| ++++.|+|++|.|.++.++..
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 368999999999999999999 689999999999999987654
No 325
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.5e-08 Score=70.77 Aligned_cols=44 Identities=20% Similarity=0.465 Sum_probs=38.9
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
++|+ +.+||||||+|.+.++|++|+ +++..|+|+.|.|.++.++
T Consensus 62 ~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 62 IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 4554 359999999999999999999 6899999999999999875
No 326
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.66 E-value=9.9e-09 Score=72.70 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=37.0
Q ss_pred CCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCC
Q 026534 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~ 46 (237)
+++++|||||+|.+.++|.+|+ +++.+|+||.|.|.++..
T Consensus 67 ~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 67 DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp TCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred CCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 5789999999999999999999 899999999999998753
No 327
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.65 E-value=4.1e-08 Score=84.94 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=45.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 1 ~~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
|++|+.|++++|||||+|.+.++|.+|| +++++|.|+.|.|.++.++..
T Consensus 134 i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 134 MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred eeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 5788999999999999999999999999 789999999999999987654
No 328
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.65 E-value=1.2e-08 Score=69.50 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=39.1
Q ss_pred CCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 7 tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
++.++|||||+|.+.++|++|+ +++..|+|+.|.|.++.++..
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 5788999999999999999999 689999999999999987643
No 329
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.64 E-value=6e-08 Score=76.26 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHhcCCcEEEEEeecC----CCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 026534 112 EATAEDLRRYFSRFGRILDVYVPKD----PKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (237)
Q Consensus 112 ~~~~~~l~~~F~~~G~i~~~~v~~~----~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~v~~a~ 177 (237)
.-.+++|.+.|++||.|..+.|+.+ ..+++++|++||+|.+.++|.+|+..++ .+.|+.|.+.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3467899999999999999999844 3455889999999999999999997554 9999999999864
No 330
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=3.5e-08 Score=69.16 Aligned_cols=41 Identities=15% Similarity=0.343 Sum_probs=37.6
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
.++|||||+|.+.++|++|| +++..|+|+.|.|.++.++..
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 48999999999999999999 789999999999999987654
No 331
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=6e-08 Score=66.54 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=37.2
Q ss_pred CCcccEEEEEecCHHHHHHHHhccceeCCcEEEEeecCCCCC
Q 026534 8 KAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~a~~~~~ 49 (237)
+++||||||+|.+.++|+.||.....+.+++|.|.++.++..
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCCCC
Confidence 479999999999999999999667778999999999887654
No 332
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=4.5e-08 Score=66.07 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=37.5
Q ss_pred CcccEEEEEecCHHHHHHHH--hcc-ceeCCcEEEEeecCCCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDT-HELGGSTVVVDRATPKED 49 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~-~~~~gr~i~v~~a~~~~~ 49 (237)
.++|||||+|.+.++|++|| +++ +.|+|+.|.|.++.++..
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 57999999999999999999 788 999999999999987654
No 333
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=8.9e-08 Score=65.42 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=37.4
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
.++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 46899999999999999999 789999999999999987654
No 334
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.60 E-value=5.6e-08 Score=66.51 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=34.5
Q ss_pred CcccEEEEEecCHHHHHHHH--hccc--eeCCcEEEEeecCCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTH--ELGGSTVVVDRATPKE 48 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~--~~~gr~i~v~~a~~~~ 48 (237)
++||||||+|.+.++|.+|| +++. .|.|++|.|+++.+++
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 46899999999999999999 5544 5899999999998754
No 335
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=6.3e-08 Score=68.07 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=37.8
Q ss_pred CCCCCCC---CCcccEEEEEecCHHHHHHHHhccceeCCcEEEEeecC
Q 026534 1 MPKDQGS---KAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRAT 45 (237)
Q Consensus 1 ~~~d~~t---g~skG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~a~ 45 (237)
+++|+.| |++||||||+|.+.++|++||...+.++|+.|.+..+.
T Consensus 39 ~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 39 WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSP 86 (114)
T ss_dssp CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCS
T ss_pred EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCC
Confidence 4667777 79999999999999999999966567899988886554
No 336
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.58 E-value=5.4e-08 Score=65.07 Aligned_cols=39 Identities=13% Similarity=0.347 Sum_probs=36.1
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
++||||||+|.+.++|++|+ +++..++|++|.|.++...
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 68999999999999999999 7899999999999998654
No 337
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=8.9e-08 Score=66.66 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=36.8
Q ss_pred ccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
+|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 899999999999999999 6899999999999999887553
No 338
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=1.2e-07 Score=63.59 Aligned_cols=40 Identities=18% Similarity=0.402 Sum_probs=36.4
Q ss_pred ccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
||||||+|.+.++|++|| +++..|+|++|.|.++.++...
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 799999999999999999 7889999999999999876543
No 339
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.55 E-value=4.3e-08 Score=67.25 Aligned_cols=39 Identities=10% Similarity=0.307 Sum_probs=36.0
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
++||||||+|.+.++|++|| +++..|+|+.|.|.++.++
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 68999999999999999999 6899999999999998763
No 340
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=5.3e-08 Score=67.25 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=35.2
Q ss_pred cccEEEEEecCHHHHHHHH--hc--cceeCCcEEEEeecCCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VD--THELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~--~~~~~gr~i~v~~a~~~~~~ 50 (237)
.||||||+|.+.++|++|| ++ +.+|.|++|.|.++.++...
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 3899999999999999999 34 47899999999999876543
No 341
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.53 E-value=2.7e-07 Score=63.51 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=37.4
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDF 51 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~~ 51 (237)
.+|||||+|.+.++|++|| ++++.|+|+.|.|.++.++....
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 4789999999999999999 68999999999999998776543
No 342
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=9.9e-08 Score=65.69 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=34.9
Q ss_pred cccEEEEEecCHHHHHHHH--hcc--ceeCCcEEEEeecCCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDT--HELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~--~~~~gr~i~v~~a~~~~~~ 50 (237)
.||||||+|.+.++|++|| +++ ..|.|++|.|.++..+...
T Consensus 51 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 51 KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRI 95 (102)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTTS
T ss_pred CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCCC
Confidence 4689999999999999999 453 4699999999999876543
No 343
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=9.3e-08 Score=64.15 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=36.2
Q ss_pred cEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCCC
Q 026534 12 GIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 12 G~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
|+|||.|.+.++|++|+ |++..|.||+|+|.+|..+.+.
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcce
Confidence 99999999999999999 8999999999999999876543
No 344
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.51 E-value=1.1e-07 Score=67.65 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=37.7
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
++||||||+|.+.++|++|| +++..|.|+.|.|.++.++..
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 68999999999999999999 689999999999999987643
No 345
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.51 E-value=1.5e-07 Score=64.22 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=35.2
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
++|||||+|.+.++|++|| +++..|+|+.|.|+++.++
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 5899999999999999999 7899999999999998765
No 346
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.51 E-value=1.2e-07 Score=66.40 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=35.9
Q ss_pred CcccEEEEEecCHHHHHHHH--hc--cceeCCcEEEEeecCCCCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VD--THELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~--~~~~~gr~i~v~~a~~~~~~ 50 (237)
++||||||+|.+.++|++|| ++ +..|.|++|.|.++..+...
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccccc
Confidence 57899999999999999999 44 45799999999999876543
No 347
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.51 E-value=9.1e-08 Score=65.38 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=37.1
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
++||||||+|.+.++|++|| ++++.|+|++|.|.++.++..
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 45899999999999999999 689999999999999987653
No 348
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1e-07 Score=64.44 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=39.0
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecCCCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~~~ 49 (237)
+.|+.+++ ||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 39 ~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 39 VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCC
T ss_pred EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCC
Confidence 45677766 9999999999999999 889999999999998876544
No 349
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.9e-07 Score=64.19 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=34.9
Q ss_pred cccEEEEEecCHHHHHHHH--h--ccceeCCcEEEEeecCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--V--DTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~--~~~~~~gr~i~v~~a~~~~~ 49 (237)
.||||||+|.+.++|++|| + ++..|.|++|.|.++.++..
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 50 GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 3899999999999999999 3 36789999999999987654
No 350
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.48 E-value=1.3e-07 Score=65.87 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=35.8
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
++|||||+|.+.++|++|| ++++.|+|+.|.|.++.+..
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 6899999999999999999 68999999999999997543
No 351
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=3.4e-07 Score=61.57 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=36.2
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
.++||||+|.+.++|++|| ++++.|.|+.|.|.++.++..
T Consensus 43 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 43 VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 3679999999999999999 689999999999999987654
No 352
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.47 E-value=2.5e-07 Score=63.93 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=34.5
Q ss_pred cccEEEEEecCHHHHHHHH--hc--cceeCCcEEEEeecCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VD--THELGGSTVVVDRATPKED 49 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~--~~~~~gr~i~v~~a~~~~~ 49 (237)
.||||||+|.+.++|++|| ++ ...|.|++|.|.++.++..
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 4899999999999999999 44 3469999999999987654
No 353
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=1.8e-07 Score=63.67 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=35.4
Q ss_pred ccEEEEEecCHHHHHHHH--hccceeC--CcEEEEeecCCCC
Q 026534 11 RGIGFITFASADSVENLM--VDTHELG--GSTVVVDRATPKE 48 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai--~~~~~~~--gr~i~v~~a~~~~ 48 (237)
||||||+|.+.++|++|| ++++.|. |+.|.|.++.++.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 899999999999999999 6899999 9999999998764
No 354
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=1.9e-07 Score=64.89 Aligned_cols=39 Identities=15% Similarity=0.397 Sum_probs=35.6
Q ss_pred cEEEEEecCHHHHHHHH--hccceeCC-----cEEEEeecCCCCCC
Q 026534 12 GIGFITFASADSVENLM--VDTHELGG-----STVVVDRATPKEDD 50 (237)
Q Consensus 12 G~aFV~F~~~~~A~~Ai--~~~~~~~g-----r~i~v~~a~~~~~~ 50 (237)
|||||+|.+.++|++|| ++++.|.| +.|.|.++.++...
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 89999999999999999 78999999 99999999886543
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.46 E-value=1.8e-07 Score=62.18 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=32.9
Q ss_pred CCcccEEEEEecCHHHHHHHH-hccceeCCcEEEEee
Q 026534 8 KAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDR 43 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~ 43 (237)
.++||||||+|.+.++|++|+ +++..|.|+.|.|++
T Consensus 50 ~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 50 NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp CSSSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred cCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 356999999999999999999 789999999999975
No 356
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.46 E-value=2.3e-07 Score=62.14 Aligned_cols=41 Identities=27% Similarity=0.474 Sum_probs=31.9
Q ss_pred CcccEEEEEecCHHHHHHHHhccceeCCcEEEEeecCCCCC
Q 026534 9 AHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~a~~~~~ 49 (237)
.+||||||+|.+.++|+++....+.+.|+.|.|.++.++..
T Consensus 46 ~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 46 PFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp SCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC----
T ss_pred CCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCCCc
Confidence 38999999999999999655445677899999999987653
No 357
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.46 E-value=1.7e-07 Score=65.25 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=35.6
Q ss_pred ccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
+|||||+|.+.++|++|+ +++..|+|+.|.|.++.++..
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 899999999999999999 689999999999999987643
No 358
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=2.9e-07 Score=61.63 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=35.6
Q ss_pred ccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
++||||+|.+.++|++|| ++++.|+|+.|.|.++.+...
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 669999999999999999 689999999999999987644
No 359
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.43 E-value=1.8e-07 Score=65.66 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=34.7
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~ 46 (237)
++|||||+|.+.++|++|+ |++.+|+||.|.|.++..
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 6999999999999999999 899999999999999854
No 360
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.4e-07 Score=64.13 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=36.3
Q ss_pred cccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~~ 49 (237)
+||||||+|.+.++|++|| +++..|.|++|.|.++.++..
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 5899999999999999999 689999999999999976644
No 361
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=2.4e-07 Score=61.28 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=33.5
Q ss_pred CcccEEEEEecCHHHHHHHH--h-ccceeCCcEEEEeecC
Q 026534 9 AHRGIGFITFASADSVENLM--V-DTHELGGSTVVVDRAT 45 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~-~~~~~~gr~i~v~~a~ 45 (237)
++||||||+|.+.++|++|+ + ++..|+|++|.|.++.
T Consensus 46 ~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 46 QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 36899999999999999999 5 8899999999999873
No 362
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.7e-07 Score=62.50 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=37.3
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCCC
Q 026534 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (237)
Q Consensus 2 ~~d~~tg~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~~ 48 (237)
++|+.++. |||+|.+.++|++|| ++++.|+|++|.|.++.++.
T Consensus 49 ~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 49 NTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp CCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred ecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 45655544 999999999999999 78999999999999998873
No 363
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.39 E-value=2.2e-07 Score=64.94 Aligned_cols=39 Identities=5% Similarity=0.024 Sum_probs=35.8
Q ss_pred CcccEEEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
.++|||||+|.+.++|++|| +++..|.|+.|.|.++...
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 47899999999999999999 7899999999999998653
No 364
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=3.6e-07 Score=60.89 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=35.8
Q ss_pred cccEEEEEecCHHHHHHHHhccceeCCcEEEEeecCCCCCC
Q 026534 10 HRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~a~~~~~~ 50 (237)
+||||||+|.+.++|++|+...+.+.|+.|.|.++.++...
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCCC
Confidence 89999999999999998775567889999999999877553
No 365
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.38 E-value=4.5e-07 Score=67.52 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=36.9
Q ss_pred CCcccEEEEEecCHHHHHHHH--hccceeCC--cEEEEeecCCCCC
Q 026534 8 KAHRGIGFITFASADSVENLM--VDTHELGG--STVVVDRATPKED 49 (237)
Q Consensus 8 g~skG~aFV~F~~~~~A~~Ai--~~~~~~~g--r~i~v~~a~~~~~ 49 (237)
+.++|||||+|.+.++|++|+ +++..|.| ++|+|+++.++..
T Consensus 81 k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 81 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 347899999999999999999 78999965 9999999987643
No 366
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=4.1e-07 Score=64.27 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=35.4
Q ss_pred cccEEEEEecCHHHHHHHH--hc--cceeCCcEEEEeecCCCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VD--THELGGSTVVVDRATPKEDD 50 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~--~~~~~gr~i~v~~a~~~~~~ 50 (237)
.||||||+|.+.++|++|| ++ +..|.|++|.|.++.++...
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 4899999999999999999 44 46899999999999876543
No 367
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=3.1e-06 Score=57.71 Aligned_cols=71 Identities=10% Similarity=0.162 Sum_probs=61.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC-----CcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh--cCCccCCeEE
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSRF-----GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQV 171 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~~-----G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~--~~~~~~g~~l 171 (237)
....+|-+-+||..+++..|+.+++.+ |.|+.+.+..|. +-|+|+|.+...|.+|.. ++.+|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346788888999999999999999999 999999998873 459999999999999964 5559999999
Q ss_pred EEEe
Q 026534 172 AIDS 175 (237)
Q Consensus 172 ~v~~ 175 (237)
+|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9863
No 368
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.7e-05 Score=53.61 Aligned_cols=76 Identities=32% Similarity=0.384 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhc---C--CcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc-CCccCCeEEE
Q 026534 99 RIGKKIFVGRLPQEATAEDLRRYFSR---F--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVA 172 (237)
Q Consensus 99 ~~~~~l~v~~lp~~~~~~~l~~~F~~---~--G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~g~~l~ 172 (237)
....+|.|.|||..++++.|+-+|++ - |.|..+.... .-|+|+|.+.+.|+.+|.+ .|.|.+..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 45689999999999999999999986 2 4788877644 3689999999999999987 8899999999
Q ss_pred EEeccCCCCC
Q 026534 173 IDSATPLDDA 182 (237)
Q Consensus 173 v~~a~~~~~~ 182 (237)
|....++...
T Consensus 78 V~P~~~~~~~ 87 (104)
T 2dhx_A 78 LRPAPPRAPA 87 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEcCCCCCcc
Confidence 9887666544
No 369
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=9e-07 Score=61.96 Aligned_cols=39 Identities=8% Similarity=0.215 Sum_probs=34.2
Q ss_pred cccEEEEEecCHHHHHHHH--hcccee-----CCcEEEEeecCCCC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHEL-----GGSTVVVDRATPKE 48 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~-----~gr~i~v~~a~~~~ 48 (237)
+||||||+|.+.++|++|+ +++.+| .|++|.|.++...+
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 5899999999999999999 788888 68999999986543
No 370
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.27 E-value=1.4e-06 Score=62.34 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=36.7
Q ss_pred CcccE-EEEEecCHHHHHHHH--hccceeCC--cEEEEeecCCCCCC
Q 026534 9 AHRGI-GFITFASADSVENLM--VDTHELGG--STVVVDRATPKEDD 50 (237)
Q Consensus 9 ~skG~-aFV~F~~~~~A~~Ai--~~~~~~~g--r~i~v~~a~~~~~~ 50 (237)
+++|| |||+|.+.++|++|+ +++..|.| +.|+|+++.+..-.
T Consensus 63 ~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~ 109 (130)
T 3zzy_A 63 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLN 109 (130)
T ss_dssp ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCcee
Confidence 35788 999999999999999 89999988 89999999876543
No 371
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.19 E-value=1.5e-06 Score=61.10 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=30.9
Q ss_pred cEEEEEecCHHHHHHHH--hccceeCCcE-----EEEeecCCCC
Q 026534 12 GIGFITFASADSVENLM--VDTHELGGST-----VVVDRATPKE 48 (237)
Q Consensus 12 G~aFV~F~~~~~A~~Ai--~~~~~~~gr~-----i~v~~a~~~~ 48 (237)
|||||+|.+.++|++|| +++.+|+|++ |+|..+.++.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~ 95 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRS 95 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC---
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCC
Confidence 99999999999999999 7899999998 7777666543
No 372
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.13 E-value=4.4e-06 Score=59.40 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=34.1
Q ss_pred cE-EEEEecCHHHHHHHH--hccceeCC--cEEEEeecCCCCC
Q 026534 12 GI-GFITFASADSVENLM--VDTHELGG--STVVVDRATPKED 49 (237)
Q Consensus 12 G~-aFV~F~~~~~A~~Ai--~~~~~~~g--r~i~v~~a~~~~~ 49 (237)
|| |||+|.+.++|++|+ +++..|.| +.|+|.++.++..
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 86 999999999999999 79999988 6899999987753
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=5.4e-06 Score=55.02 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=32.2
Q ss_pred EEEEecCHHHHHHHH-hccceeCCcEEEEeecCCC
Q 026534 14 GFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 14 aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~~ 47 (237)
+||+|.+.++|.+|| |++..+.||.|+|+.+.+.
T Consensus 52 ~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 52 MWVTFLEGSSALNVLSLNGKELLNRTITIALKSPS 86 (91)
T ss_dssp EEEEESSHHHHHHGGGGTTCEETTEEEEEEECCCS
T ss_pred EEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCCC
Confidence 899999999999999 9999999999999998764
No 374
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=2.4e-05 Score=52.18 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=30.6
Q ss_pred EEEEecCHHHHHHHH-hccceeCCcEEEEeecCC
Q 026534 14 GFITFASADSVENLM-VDTHELGGSTVVVDRATP 46 (237)
Q Consensus 14 aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~~ 46 (237)
+||+|.+.++|.+|| +++..+.||.|+|++..+
T Consensus 61 ~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 61 MLVTFADSHSALSVLDVDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp EEEECSCSHHHHHHHHGGGSEETTEEEEEECCCC
T ss_pred EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccCC
Confidence 999999999999999 999999999999987653
No 375
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.45 E-value=0.00045 Score=46.85 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC--ccCCeEEE
Q 026534 100 IGKKIFVGRLPQEA-T----AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 172 (237)
Q Consensus 100 ~~~~l~v~~lp~~~-~----~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~g~~l~ 172 (237)
..++|+|.||+.++ . .+.++++|.+|+.+......+. -.-..|.|.+.++|.+|-..+| .+.|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998865 2 2577899999998887777764 2246999999999999987776 89999999
Q ss_pred EEeccCCC
Q 026534 173 IDSATPLD 180 (237)
Q Consensus 173 v~~a~~~~ 180 (237)
|-++++..
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99998553
No 376
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.39 E-value=0.00091 Score=44.63 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=45.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
....+.++| .+|.++...||.++|+.||.| .|..+.| --|||.|.+++.|..|+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHH
Confidence 444567777 999999999999999999954 4666666 369999999999998875
No 377
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.35 E-value=0.00019 Score=59.75 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=29.5
Q ss_pred cccEEEEEecCHHHHHHHH--hcccee---CCc--EEEEeecC
Q 026534 10 HRGIGFITFASADSVENLM--VDTHEL---GGS--TVVVDRAT 45 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai--~~~~~~---~gr--~i~v~~a~ 45 (237)
+||||||+|.+.++|++|| +|+.++ .|+ .|.|.++.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 7899999999999999999 788866 345 56776664
No 378
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.80 E-value=0.0015 Score=43.68 Aligned_cols=52 Identities=25% Similarity=0.392 Sum_probs=43.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (237)
.+.++| ++|.++...||.++|+.||.| .|..+.| --|||.|.+++.|..|+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHH
Confidence 356677 999999999999999999944 5777776 369999999999888875
No 379
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.71 E-value=0.00092 Score=50.37 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=26.0
Q ss_pred CCCCcccEEEEEecCHHHHHHHHhccceeCCcEE
Q 026534 6 GSKAHRGIGFITFASADSVENLMVDTHELGGSTV 39 (237)
Q Consensus 6 ~tg~skG~aFV~F~~~~~A~~Ai~~~~~~~gr~i 39 (237)
.|++++|||||+|.+.++|++||.. ++|..|
T Consensus 124 ~~g~~kG~afV~F~~~~~A~~Ai~~---lng~~l 154 (177)
T 2f3j_A 124 RSGRSLGTADVHFERRADALKAMKQ---YKGVPL 154 (177)
T ss_dssp TTSSCSCCEEEEESCHHHHHHHHHH---STTCBC
T ss_pred CCCCEeeEEEEEeCCHHHHHHHHHH---hCCCEE
Confidence 4689999999999999999999954 566544
No 380
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.62 E-value=0.0087 Score=39.68 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=46.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCC--CcceEEEEEcCHHHHHHHHh
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG--HRGFGFVTFAEEVVADRVSR 161 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~--~~g~afv~f~~~~~a~~a~~ 161 (237)
.+|.|++||+++||+++.+.+.....+.....+....+.+ .-.-|||.|.+.+++..-..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~ 63 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 63 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 4789999999999999999999888777666655443332 23569999999887776654
No 381
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.60 E-value=0.0064 Score=42.29 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=54.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHh-cCCccCC-eEEEEEe
Q 026534 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICG-QQVAIDS 175 (237)
Q Consensus 98 ~~~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~g-~~l~v~~ 175 (237)
.....-|.|.+.|+.. ...|.+.|++||.|+...... ...+-.|.|.++.+|++||. ++..|.+ --|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 3446788899999996 566778899999998776621 34689999999999999996 4556664 4455555
Q ss_pred c
Q 026534 176 A 176 (237)
Q Consensus 176 a 176 (237)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 382
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.53 E-value=0.0016 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.0
Q ss_pred CcccEEEEEecCHHHHHHHH--hcccee
Q 026534 9 AHRGIGFITFASADSVENLM--VDTHEL 34 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai--~~~~~~ 34 (237)
.+||||||+|.+.++|+.|+ |++..|
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 47999999999999999999 555544
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.14 E-value=0.0085 Score=40.43 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=31.1
Q ss_pred cEEEEEecCHHHHHHHHhc-cceeCCcEEEEeecCCC
Q 026534 12 GIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47 (237)
Q Consensus 12 G~aFV~F~~~~~A~~Ai~~-~~~~~gr~i~v~~a~~~ 47 (237)
+-|+|+|.+.+.|++++.. .|.|++..|.|....++
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCC
Confidence 5699999999999999965 99999999999765543
No 384
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.99 E-value=0.0036 Score=54.06 Aligned_cols=55 Identities=15% Similarity=0.400 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 162 (237)
..|+|. .|..+++.+|.++|++||.|..+.+..+ ..-|+.|||.+.+++++++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-----~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-----FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-----SSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-----CCeEEEEEeCCHHHHHHHHhc
Confidence 579996 7999999999999999999998887765 347999999999998887643
No 385
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.97 E-value=0.0043 Score=45.04 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=22.7
Q ss_pred CcccEEEEEecCHHHHHHHHhccceeCCcEE
Q 026534 9 AHRGIGFITFASADSVENLMVDTHELGGSTV 39 (237)
Q Consensus 9 ~skG~aFV~F~~~~~A~~Ai~~~~~~~gr~i 39 (237)
.++|||||+|.+.++|++||.. ++|..|
T Consensus 108 ~~~g~afV~f~~~~~a~~A~~~---l~g~~~ 135 (150)
T 2i2y_A 108 NPPGFAFVEFEDPRDAADAVRE---LDGRTL 135 (150)
T ss_dssp SSCSEEEEEESSHHHHHHHHHH---HSSSCS
T ss_pred CCCcEEEEEECCHHHHHHHHHH---cCCCEE
Confidence 3699999999999999999953 555443
No 386
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.40 E-value=0.022 Score=38.08 Aligned_cols=63 Identities=13% Similarity=0.023 Sum_probs=42.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCC--CcceEEEEEcCHHHHHHHHhc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG--HRGFGFVTFAEEVVADRVSRR 162 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~--~~g~afv~f~~~~~a~~a~~~ 162 (237)
-+-+|.|+.||+.+||+++.+.+...=.+.....+....+.+ .-.-|||.|.+.++...-...
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 356899999999999999887776654544333333222222 124589999999887776553
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.025 Score=38.61 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=27.9
Q ss_pred EEEEEecCHHHHHHHH--hccceeCCcEEEEee
Q 026534 13 IGFITFASADSVENLM--VDTHELGGSTVVVDR 43 (237)
Q Consensus 13 ~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~ 43 (237)
=|+|+|.|...|-+|. +++.+|.|++|+|.-
T Consensus 64 GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 64 GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4999999999999988 789999999999954
No 388
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.98 E-value=0.039 Score=38.90 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=52.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcEEE-EEeecCCC--------CC-----CCcceEEEEEcCHHHHHHHHh-cCCc
Q 026534 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPK--------RT-----GHRGFGFVTFAEEVVADRVSR-RSHE 165 (237)
Q Consensus 101 ~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~-~~v~~~~~--------~~-----~~~g~afv~f~~~~~a~~a~~-~~~~ 165 (237)
...|.|-+.|++.+.. +-+.|++||.|+. +.+..+.. +. ....+-.|.|.++.+|.+||. ++..
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 4567788998877655 5677999998865 32221100 00 124678999999999999995 6778
Q ss_pred cCCeEEEEEecc
Q 026534 166 ICGQQVAIDSAT 177 (237)
Q Consensus 166 ~~g~~l~v~~a~ 177 (237)
|.|.-|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 888877777653
No 389
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.76 E-value=0.042 Score=38.45 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=27.9
Q ss_pred EEEEEecC-HHHHHHHH--h--ccceeCCcEEEEeecCC
Q 026534 13 IGFITFAS-ADSVENLM--V--DTHELGGSTVVVDRATP 46 (237)
Q Consensus 13 ~aFV~F~~-~~~A~~Ai--~--~~~~~~gr~i~v~~a~~ 46 (237)
.|||+|.+ .++|..|+ + ++.+|.+..+.+.....
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 49999999 88999988 3 37799999888876653
No 390
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.27 E-value=1.4 Score=38.51 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=43.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhc
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 162 (237)
....++|+ +|..+...+|.+.|+.||.+ .|+.+.+ ..|||.|.+.+.|..++..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHH
Confidence 45677776 99999999999999999954 4555544 4699999999999988753
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.02 E-value=1 Score=30.33 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=29.8
Q ss_pred EEEEecCHHHHHHHH--hccceeCCcEEEEeecCCC
Q 026534 14 GFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (237)
Q Consensus 14 aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~~~ 47 (237)
.-|.|.+.++|.+|- +.+..+.|++|+|..+++.
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 468999999999998 6788999999999998854
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=77.31 E-value=3 Score=29.32 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=30.5
Q ss_pred ccEEEEEecCHHHHHHHH-hccceeCCcEEEEeecC
Q 026534 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 11 kG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~a~ 45 (237)
...-.|+|.+..+|++|| .|+..|.|.-|-|.+..
T Consensus 62 ~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred CcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECC
Confidence 467799999999999999 79999999887887664
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=71.89 E-value=4.3 Score=28.00 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=28.3
Q ss_pred cccEEEEEecCHHHHHHHH-hccceeCC-cEEEEeecC
Q 026534 10 HRGIGFITFASADSVENLM-VDTHELGG-STVVVDRAT 45 (237)
Q Consensus 10 skG~aFV~F~~~~~A~~Ai-~~~~~~~g-r~i~v~~a~ 45 (237)
....-.|.|.+..+|++|| .|+..|.+ --|-|....
T Consensus 58 ~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 58 TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 3467899999999999999 78888886 446665543
No 394
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=64.89 E-value=25 Score=22.69 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=51.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEcCHHHHHHHHhcCC---------ccCCeE
Q 026534 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---------EICGQQ 170 (237)
Q Consensus 100 ~~~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---------~~~g~~ 170 (237)
..+-|-|-|+|..+-..++--.....|.--.|..+. |.|.+.|.+.++..-|+.++. ++.|.-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 356677889999999998887777888666776643 569999999999888875432 556665
Q ss_pred EEEEeccC
Q 026534 171 VAIDSATP 178 (237)
Q Consensus 171 l~v~~a~~ 178 (237)
..|-...|
T Consensus 83 cdvistip 90 (129)
T 4eyt_A 83 CDVISTIP 90 (129)
T ss_dssp EEEECCCC
T ss_pred eeeeecCC
Confidence 55544443
No 395
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=40.47 E-value=24 Score=17.38 Aligned_cols=9 Identities=67% Similarity=1.069 Sum_probs=5.9
Q ss_pred CCCCCCCCC
Q 026534 229 RGDWRYRPY 237 (237)
Q Consensus 229 ~~~~r~~~~ 237 (237)
|.+.|-+||
T Consensus 21 R~drr~rpy 29 (29)
T 4fdd_B 21 RQDRRERPY 29 (29)
T ss_pred hhhcccCCC
Confidence 455577777
No 396
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=40.23 E-value=6 Score=32.84 Aligned_cols=11 Identities=27% Similarity=0.087 Sum_probs=5.1
Q ss_pred CCCHHHHHHHH
Q 026534 112 EATAEDLRRYF 122 (237)
Q Consensus 112 ~~~~~~l~~~F 122 (237)
.+++++|++..
T Consensus 228 ~vt~~~l~~i~ 238 (358)
T 2pk2_A 228 TVTLELLDELT 238 (358)
T ss_dssp SCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 34455554443
No 397
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=35.89 E-value=7.3 Score=27.90 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCcEEEEEeecCCCCCCCcceEEEEEc
Q 026534 116 EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 151 (237)
Q Consensus 116 ~~l~~~F~~~G~i~~~~v~~~~~~~~~~g~afv~f~ 151 (237)
+|+.++|...|.|+.... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 456677777776654433 5789999865
No 398
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=35.42 E-value=80 Score=23.09 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=32.5
Q ss_pred CeEEEcCCCC-C--------CCHHHHHHHH--hcCCcEEEEEeecCCCCCCCcceEEEEEcC
Q 026534 102 KKIFVGRLPQ-E--------ATAEDLRRYF--SRFGRILDVYVPKDPKRTGHRGFGFVTFAE 152 (237)
Q Consensus 102 ~~l~v~~lp~-~--------~~~~~l~~~F--~~~G~i~~~~v~~~~~~~~~~g~afv~f~~ 152 (237)
-++.|-|+|. . ....+|++.| ..|..+. |+.+.+.. | ..+++.|+|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~-G-h~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL-G-HSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS-B-EEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC-C-CceeEEEEecC
Confidence 3566778886 2 3457899977 8898765 43433322 2 67899999985
No 399
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=24.68 E-value=26 Score=22.68 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=8.1
Q ss_pred CcccEEEEEe
Q 026534 9 AHRGIGFITF 18 (237)
Q Consensus 9 ~skG~aFV~F 18 (237)
..|||+||+-
T Consensus 18 ~~KGfGFI~~ 27 (90)
T 3ulj_A 18 VRMGFGFISM 27 (90)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEeEe
Confidence 4689999964
No 400
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=24.58 E-value=32 Score=21.29 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=9.4
Q ss_pred CcccEEEEEecC
Q 026534 9 AHRGIGFITFAS 20 (237)
Q Consensus 9 ~skG~aFV~F~~ 20 (237)
..|||+||+=.+
T Consensus 12 ~~KGfGFI~~~d 23 (74)
T 2k5n_A 12 KDKGFGFIKDEN 23 (74)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEecCC
Confidence 468999998654
No 401
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=23.84 E-value=31 Score=20.80 Aligned_cols=11 Identities=45% Similarity=0.764 Sum_probs=8.4
Q ss_pred CcccEEEEEec
Q 026534 9 AHRGIGFITFA 19 (237)
Q Consensus 9 ~skG~aFV~F~ 19 (237)
..|||+||+=.
T Consensus 11 ~~kGfGFI~~~ 21 (67)
T 3cam_A 11 DAKGFGFITPD 21 (67)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEecC
Confidence 46899999744
No 402
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=23.41 E-value=32 Score=21.31 Aligned_cols=12 Identities=33% Similarity=0.420 Sum_probs=9.2
Q ss_pred CcccEEEEEecC
Q 026534 9 AHRGIGFITFAS 20 (237)
Q Consensus 9 ~skG~aFV~F~~ 20 (237)
..|||+||+=.+
T Consensus 10 ~~KGfGFI~~~d 21 (74)
T 2kcm_A 10 AAKKYGFIQGDD 21 (74)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 468999997654
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=23.22 E-value=47 Score=20.13 Aligned_cols=33 Identities=9% Similarity=0.332 Sum_probs=20.5
Q ss_pred cEEEEEecCHHHHHHHH--hccceeCCcEEEEeecC
Q 026534 12 GIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (237)
Q Consensus 12 G~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~a~ 45 (237)
.|.||+-.... |+.++ ++...+.|+++.|+.+.
T Consensus 41 ~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 41 NASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp SCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 47888887665 44444 66778899999887653
No 404
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=23.12 E-value=33 Score=20.56 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=8.4
Q ss_pred CcccEEEEEec
Q 026534 9 AHRGIGFITFA 19 (237)
Q Consensus 9 ~skG~aFV~F~ 19 (237)
..|||+||+=.
T Consensus 11 ~~kGfGFI~~~ 21 (66)
T 1c9o_A 11 NEKGYGFIEVE 21 (66)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEecC
Confidence 36899999744
No 405
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=22.09 E-value=35 Score=20.95 Aligned_cols=11 Identities=45% Similarity=0.779 Sum_probs=8.4
Q ss_pred CcccEEEEEec
Q 026534 9 AHRGIGFITFA 19 (237)
Q Consensus 9 ~skG~aFV~F~ 19 (237)
..|||+||+=.
T Consensus 11 ~~kGfGFI~~~ 21 (73)
T 3a0j_A 11 AEKGYGFIERE 21 (73)
T ss_dssp TTTTEEEEECT
T ss_pred CCCCEEEEecC
Confidence 36899999744
No 406
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.72 E-value=39 Score=21.13 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=8.5
Q ss_pred CcccEEEEEec
Q 026534 9 AHRGIGFITFA 19 (237)
Q Consensus 9 ~skG~aFV~F~ 19 (237)
..|||+||+=.
T Consensus 18 ~~kGfGFI~~~ 28 (79)
T 1h95_A 18 VRNGYGFINRN 28 (79)
T ss_dssp TTTTEEEEEEG
T ss_pred CCCCcEEEecC
Confidence 47999999743
No 407
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=21.60 E-value=36 Score=20.36 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=8.6
Q ss_pred CcccEEEEEec
Q 026534 9 AHRGIGFITFA 19 (237)
Q Consensus 9 ~skG~aFV~F~ 19 (237)
..|||+||+=.
T Consensus 10 ~~kGfGFI~~~ 20 (66)
T 1g6p_A 10 SKKGYGFITKD 20 (66)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEecC
Confidence 46899999754
No 408
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.52 E-value=84 Score=24.64 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=23.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCcEEEE
Q 026534 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDV 131 (237)
Q Consensus 102 ~~l~v~~lp~~~~~~~l~~~F~~~G~i~~~ 131 (237)
.-+.|+|||+.++...|..++.. ..+...
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 45789999999999999999977 545433
No 409
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.46 E-value=60 Score=15.28 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=10.1
Q ss_pred CHHHHHHHHhcC
Q 026534 114 TAEDLRRYFSRF 125 (237)
Q Consensus 114 ~~~~l~~~F~~~ 125 (237)
++.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688899998876
No 410
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=20.09 E-value=41 Score=20.50 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=8.9
Q ss_pred CcccEEEEEecC
Q 026534 9 AHRGIGFITFAS 20 (237)
Q Consensus 9 ~skG~aFV~F~~ 20 (237)
..|||+||+=.+
T Consensus 15 ~~kGfGFI~~~~ 26 (71)
T 3i2z_B 15 ESKGFGFITPED 26 (71)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCcEEEecCC
Confidence 468999997543
Done!