Query 026536
Match_columns 237
No_of_seqs 89 out of 103
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 09:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04759 DUF617: Protein of un 100.0 8.3E-96 2E-100 618.3 18.2 160 74-236 1-166 (166)
2 TIGR01570 A_thal_3588 uncharac 100.0 2.9E-94 6.3E-99 606.2 17.4 158 75-236 1-161 (161)
3 COG2514 Predicted ring-cleavag 56.4 5.1 0.00011 37.3 0.9 13 213-225 108-120 (265)
4 PF15566 Imm18: Immunity prote 43.7 3 6.4E-05 30.5 -2.1 34 196-230 3-36 (52)
5 COG1886 FliN Flagellar motor s 35.6 41 0.00089 27.8 3.1 19 135-154 102-120 (136)
6 PF12851 Tet_JBP: Oxygenase do 32.6 21 0.00046 30.3 1.0 32 141-172 1-35 (171)
7 PF08150 FerB: FerB (NUC096) d 21.6 64 0.0014 25.1 1.7 20 136-156 5-24 (76)
8 PF12681 Glyoxalase_2: Glyoxal 20.8 53 0.0011 23.2 1.1 11 214-224 93-103 (108)
9 PF08531 Bac_rhamnosid_N: Alph 19.9 94 0.002 26.0 2.5 16 140-155 14-29 (172)
10 PF02955 GSH-S_ATP: Prokaryoti 18.6 48 0.001 28.6 0.5 23 143-167 88-110 (173)
No 1
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=100.00 E-value=8.3e-96 Score=618.25 Aligned_cols=160 Identities=64% Similarity=1.068 Sum_probs=150.8
Q ss_pred ceEEeeecccccceEEEEecCCCCCCeEEEecccchHHHHHHhhcCeeEEEEeeccccccc------cceeeeeEEEEEc
Q 026536 74 ATTGTIFGFRKGRVCLAIQEDPHCLPMFVIELPMLTTALQKEMASDIVRIALESETKTHKK------KLLEEFVWAVYCN 147 (237)
Q Consensus 74 ~vTGTlFG~RrGrV~~aiQ~dp~~~P~lLLELa~pT~~L~kEM~~GlvRIaLEcek~~~~~------~Ll~ep~WtmyCN 147 (237)
||||||||||||||+||||+||++.|+||||||+||++|+|||++|+|||||||||++.+. +||+||+|+||||
T Consensus 1 rvtGTlFG~RrGrV~~aiQ~d~~s~P~lllELa~pT~~L~~EM~~GlvRIaLEc~k~~~~~~~~~~~~Ll~ep~W~myCN 80 (166)
T PF04759_consen 1 RVTGTLFGHRRGRVSFAIQEDPRSPPILLLELAMPTSALVREMASGLVRIALECEKRKGKSKGAASGSLLEEPVWTMYCN 80 (166)
T ss_pred CcEEEEEecccceEEEEEecCCCCCCeEEEEecCcHHHHHHHhhcCeEEEEEEecCCCCCCCcccccccccceeEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999976432 5999999999999
Q ss_pred CeeeeeeeeccCCChhHHHHHHHhcceecCceeecCCCccccccCCCCceEeeeeecceeeecCCcceeeeecCCCCCCC
Q 026536 148 GRKIGYSIRRKHLSDDELHVVQLLRGVSMGAGVLPSPNEKEASACTDGELTYMRARFERVAGSKDSEAFYMINPEGAAGP 227 (237)
Q Consensus 148 GrK~GYAvRR~~~t~~D~~VL~~l~~VSmGAGVLP~~~~~~~~~~~dgEl~YMRA~FERVVGSkDSEsfyMinPdg~~Gp 227 (237)
||||||||||+ |||+||+||++|++|||||||||+.... .++.|||||||||+|||||||+||||||||||||++||
T Consensus 81 GrK~GyAvRRe-~t~~d~~vL~~l~~VS~GAGVlP~~~~~--~~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~Gp 157 (166)
T PF04759_consen 81 GRKVGYAVRRE-PTDDDLHVLELLRSVSMGAGVLPGGGGG--SGGGDGELMYMRARFERVVGSRDSESFYMINPDGNGGP 157 (166)
T ss_pred CceeeeeEEcC-CCHHHHHHHHhhheeeecceeccCcccc--CCCCCceEeeeeeeeeeeeccCCcceeEEECCCCCCCc
Confidence 99999999995 9999999999999999999999993222 24789999999999999999999999999999999999
Q ss_pred ceEEEEEee
Q 026536 228 ELSIFFVRN 236 (237)
Q Consensus 228 ELSIFflR~ 236 (237)
||||||+|+
T Consensus 158 ELSIFf~Rv 166 (166)
T PF04759_consen 158 ELSIFFLRV 166 (166)
T ss_pred eEEEEEEeC
Confidence 999999996
No 2
>TIGR01570 A_thal_3588 uncharacterized plant-specific domain TIGR01570. This model represents a region of about 170 amino acids found at the C-terminus of a family of plant proteins. These proteins typically have additional highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterized protein. At least 12 distinct members are found in Arabidopsis thaliana.
Probab=100.00 E-value=2.9e-94 Score=606.15 Aligned_cols=158 Identities=60% Similarity=0.995 Sum_probs=148.7
Q ss_pred eEEeeecccccceEEEEecCCCCCCeEEEecccchHHHHHHhhcCeeEEEEeeccccc--cccceeeeeEEEEEcCeeee
Q 026536 75 TTGTIFGFRKGRVCLAIQEDPHCLPMFVIELPMLTTALQKEMASDIVRIALESETKTH--KKKLLEEFVWAVYCNGRKIG 152 (237)
Q Consensus 75 vTGTlFG~RrGrV~~aiQ~dp~~~P~lLLELa~pT~~L~kEM~~GlvRIaLEcek~~~--~~~Ll~ep~WtmyCNGrK~G 152 (237)
|||||||||||||+||||+||++.|+||||||+||++|+|||++|+|||||||||++. +.+|++||+|+|||||||||
T Consensus 1 vtGTlfG~RrgrV~~~iQ~dp~~~P~lllELa~pt~~L~~Em~~G~vRIaLEc~k~~~~~~~~ll~ep~W~myCNGrk~G 80 (161)
T TIGR01570 1 VTGTIFGYRKGRVNFCIQEDRRSLPILLLELAMPTSVLQKEMSSGLVRIALECETRKQDKDSKLLSEPVWTMYCNGRKVG 80 (161)
T ss_pred CeEEEecCCCCcceeeecCCCCCCCeeeeeecCcHHHHHHHhhcCceeEEeeeeccccCCCccceeeeeEEEEECCceee
Confidence 6999999999999999999999999999999999999999999999999999999764 45899999999999999999
Q ss_pred eeeeccCCChhHHHHHHHhcceecCceeecCCCccccccCCC-CceEeeeeecceeeecCCcceeeeecCCCCCCCceEE
Q 026536 153 YSIRRKHLSDDELHVVQLLRGVSMGAGVLPSPNEKEASACTD-GELTYMRARFERVAGSKDSEAFYMINPEGAAGPELSI 231 (237)
Q Consensus 153 YAvRR~~~t~~D~~VL~~l~~VSmGAGVLP~~~~~~~~~~~d-gEl~YMRA~FERVVGSkDSEsfyMinPdg~~GpELSI 231 (237)
|||||+ |||+||+||++|++|||||||||+..+.+ +.| ||||||||+||||||||||||||||||||++||||||
T Consensus 81 yAvRR~-~t~~d~~vL~~l~~VS~GAGVlP~~~~~~---~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~gpELSI 156 (161)
T TIGR01570 81 YAVKRS-ASEEDMTVLTALSKVSVGAGVLPCGKELG---GFDEDELMYMRASFERVVGSKDSESFYMINPEGNIGQELSI 156 (161)
T ss_pred EeEecC-CCHHHHHHHHhhheeeecceeccCCCCCC---CCCCceEEEEeeeeeEeccccCceeEEeECCCCCCCceEEE
Confidence 999995 99999999999999999999999653322 334 9999999999999999999999999999999999999
Q ss_pred EEEee
Q 026536 232 FFVRN 236 (237)
Q Consensus 232 FflR~ 236 (237)
||+|+
T Consensus 157 F~lR~ 161 (161)
T TIGR01570 157 FFLRS 161 (161)
T ss_pred EEEeC
Confidence 99996
No 3
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=56.43 E-value=5.1 Score=37.34 Aligned_cols=13 Identities=54% Similarity=0.981 Sum_probs=12.0
Q ss_pred cceeeeecCCCCC
Q 026536 213 SEAFYMINPEGAA 225 (237)
Q Consensus 213 SEsfyMinPdg~~ 225 (237)
|||+|+-||+||+
T Consensus 108 SEAlYl~DPEGNG 120 (265)
T COG2514 108 SEALYLEDPEGNG 120 (265)
T ss_pred heeeeecCCCCCe
Confidence 9999999999974
No 4
>PF15566 Imm18: Immunity protein 18
Probab=43.66 E-value=3 Score=30.47 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=28.3
Q ss_pred ceEeeeeecceeeecCCcceeeeecCCCCCCCceE
Q 026536 196 ELTYMRARFERVAGSKDSEAFYMINPEGAAGPELS 230 (237)
Q Consensus 196 El~YMRA~FERVVGSkDSEsfyMinPdg~~GpELS 230 (237)
+|.|+...-++..++.+.+-=|+|.|+ ++|-|||
T Consensus 3 gL~~L~~~l~~L~~~~~~~H~Hlmtp~-WgG~ELs 36 (52)
T PF15566_consen 3 GLELLQDQLENLQEKEPFDHEHLMTPD-WGGEELS 36 (52)
T ss_pred hHHHHHHHHHHHHhccCCCCceecccc-ccccccc
Confidence 577888888888888788888999995 6788887
No 5
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.57 E-value=41 Score=27.81 Aligned_cols=19 Identities=47% Similarity=0.433 Sum_probs=15.7
Q ss_pred cceeeeeEEEEEcCeeeeee
Q 026536 135 KLLEEFVWAVYCNGRKIGYS 154 (237)
Q Consensus 135 ~Ll~ep~WtmyCNGrK~GYA 154 (237)
++..+|+|- ++|||++||+
T Consensus 102 ~~~~~~VdI-~vNg~~Ig~G 120 (136)
T COG1886 102 KLAGEPVDI-LVNGRLIGRG 120 (136)
T ss_pred CcCCCceEE-EECCEEEEEE
Confidence 456789986 6999999986
No 6
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=32.63 E-value=21 Score=30.33 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=19.1
Q ss_pred eEEEEEcCeeeee---eeeccCCChhHHHHHHHhc
Q 026536 141 VWAVYCNGRKIGY---SIRRKHLSDDELHVVQLLR 172 (237)
Q Consensus 141 ~WtmyCNGrK~GY---AvRR~~~t~~D~~VL~~l~ 172 (237)
.|.||-||+|.+= +.|+-..+.++..+.+.|+
T Consensus 1 ~~~~y~~~~~~~r~~~~~rk~~~~~~~~~~~~~l~ 35 (171)
T PF12851_consen 1 SWSMYFNGCKFPRGSKKPRKFRLTPENPKLEENLQ 35 (171)
T ss_pred CeeEEeCCCCccccccccceeecccccccHHHHHH
Confidence 3999999988765 3344334555544444443
No 7
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=21.60 E-value=64 Score=25.06 Aligned_cols=20 Identities=15% Similarity=0.687 Sum_probs=15.7
Q ss_pred ceeeeeEEEEEcCeeeeeeee
Q 026536 136 LLEEFVWAVYCNGRKIGYSIR 156 (237)
Q Consensus 136 Ll~ep~WtmyCNGrK~GYAvR 156 (237)
|=|.-+| |.||+|++.||--
T Consensus 5 iPDV~IW-Ml~g~kRvAYaRI 24 (76)
T PF08150_consen 5 IPDVFIW-MLSGNKRVAYARI 24 (76)
T ss_pred CCcEEEE-EEeCCeEEEEEEe
Confidence 3456678 7899999999943
No 8
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=20.83 E-value=53 Score=23.22 Aligned_cols=11 Identities=45% Similarity=1.232 Sum_probs=7.7
Q ss_pred ceeeeecCCCC
Q 026536 214 EAFYMINPEGA 224 (237)
Q Consensus 214 EsfyMinPdg~ 224 (237)
-.||++||||+
T Consensus 93 ~~~~~~DPdG~ 103 (108)
T PF12681_consen 93 RSFYFIDPDGN 103 (108)
T ss_dssp EEEEEE-TTS-
T ss_pred EEEEEECCCCC
Confidence 47999999985
No 9
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=19.90 E-value=94 Score=25.99 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.3
Q ss_pred eeEEEEEcCeeeeeee
Q 026536 140 FVWAVYCNGRKIGYSI 155 (237)
Q Consensus 140 p~WtmyCNGrK~GYAv 155 (237)
-...+|.||++||-.+
T Consensus 14 g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 14 GRYELYVNGERVGDGP 29 (172)
T ss_dssp SEEEEEETTEEEEEE-
T ss_pred eeEEEEECCEEeeCCc
Confidence 3678999999999888
No 10
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=18.56 E-value=48 Score=28.55 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=13.9
Q ss_pred EEEEcCeeeeeeeeccCCChhHHHH
Q 026536 143 AVYCNGRKIGYSIRRKHLSDDELHV 167 (237)
Q Consensus 143 tmyCNGrK~GYAvRR~~~t~~D~~V 167 (237)
-+++||+=+| |++|. +.+.|+++
T Consensus 88 ii~~nG~~~~-av~R~-P~~gd~R~ 110 (173)
T PF02955_consen 88 IILFNGEPSH-AVRRI-PAKGDFRS 110 (173)
T ss_dssp EEEETTEE-S-EEEEE---SS-S--
T ss_pred EEEECCEEhH-HeecC-CCCCCcee
Confidence 3679999999 99996 67777764
Done!