Query 026536
Match_columns 237
No_of_seqs 89 out of 103
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kd2_A FAS apoptotic inhibitor 36.5 19 0.00065 27.9 2.3 20 120-151 23-42 (94)
2 2hbp_A Cytoskeleton assembly c 17.5 75 0.0026 23.3 2.4 29 146-176 34-62 (68)
3 4gym_A Glyoxalase/bleomycin re 15.4 60 0.002 23.5 1.4 10 215-224 117-126 (149)
4 2it9_A Hypothetical protein; s 12.4 1.3E+02 0.0044 24.4 2.7 27 121-157 64-90 (127)
5 3rri_A Glyoxalase/bleomycin re 11.6 90 0.0031 21.7 1.4 10 215-224 112-121 (135)
6 2nvn_A Hypothetical protein; s 11.2 1.3E+02 0.0044 24.2 2.3 26 121-156 66-91 (122)
7 2l6o_A Uncharacterized protein 11.1 1.2E+02 0.0041 23.9 2.1 28 176-203 1-31 (114)
8 3sk2_A EHPR; antibiotic resist 10.8 1E+02 0.0034 21.7 1.4 11 214-224 114-124 (132)
9 2xbz_A RETS-hybrid sensor kina 10.7 1.6E+02 0.0055 23.1 2.7 29 79-108 67-95 (171)
10 3ey7_A Biphenyl-2,3-DIOL 1,2-d 9.9 1.1E+02 0.0039 20.7 1.4 11 214-224 113-123 (133)
No 1
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Probab=36.51 E-value=19 Score=27.89 Aligned_cols=20 Identities=45% Similarity=0.895 Sum_probs=14.3
Q ss_pred eeEEEEeeccccccccceeeeeEEEEEcCeee
Q 026536 120 IVRIALESETKTHKKKLLEEFVWAVYCNGRKI 151 (237)
Q Consensus 120 lvRIaLEcek~~~~~~Ll~ep~WtmyCNGrK~ 151 (237)
--||+||-++- ..||||+|+
T Consensus 23 ~~RIvLeK~tm------------dVwvNG~~i 42 (94)
T 2kd2_A 23 DLRVVLEKDTM------------DVWCNGQKM 42 (94)
T ss_dssp EEEEEEETTTT------------EEEESSSBC
T ss_pred EEEEEEecCcE------------EEEECCEEe
Confidence 57888884442 367999986
No 2
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=17.51 E-value=75 Score=23.35 Aligned_cols=29 Identities=34% Similarity=0.591 Sum_probs=24.9
Q ss_pred EcCeeeeeeeeccCCChhHHHHHHHhcceec
Q 026536 146 CNGRKIGYSIRRKHLSDDELHVVQLLRGVSM 176 (237)
Q Consensus 146 CNGrK~GYAvRR~~~t~~D~~VL~~l~~VSm 176 (237)
-||.|+--++-+ .|++|+.-++.+.+.|.
T Consensus 34 ~nGv~I~VP~~k--lS~~D~~yve~~~g~sl 62 (68)
T 2hbp_A 34 ANGVKIAVAADK--LSNEDLAYVEKITGFSL 62 (68)
T ss_dssp TTSCEEEEETTS--BCHHHHHHHHHHHSCCC
T ss_pred cCCcEEEeEhHH--cCHHHHHHHHHHhcccc
Confidence 499999888887 79999999999887764
No 3
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=15.35 E-value=60 Score=23.45 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=8.7
Q ss_pred eeeeecCCCC
Q 026536 215 AFYMINPEGA 224 (237)
Q Consensus 215 sfyMinPdg~ 224 (237)
++|.-|||||
T Consensus 117 ~~~f~DPDGn 126 (149)
T 4gym_A 117 GRSFHDLDGH 126 (149)
T ss_dssp EEEEECTTCC
T ss_pred EEEEEcCCCC
Confidence 5899999997
No 4
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=12.42 E-value=1.3e+02 Score=24.37 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=21.3
Q ss_pred eEEEEeeccccccccceeeeeEEEEEcCeeeeeeeec
Q 026536 121 VRIALESETKTHKKKLLEEFVWAVYCNGRKIGYSIRR 157 (237)
Q Consensus 121 vRIaLEcek~~~~~~Ll~ep~WtmyCNGrK~GYAvRR 157 (237)
=+|+||-|+ ..|-|-|+|.+-.|..|=
T Consensus 64 E~I~lE~E~----------~~~W~eleG~~~~~sLr~ 90 (127)
T 2it9_A 64 EDITLELER----------RPWLAILNGDQYGWNLRL 90 (127)
T ss_dssp CEEEEEEEE----------TTEEEEEEEETTEEEEEE
T ss_pred hheeeeecC----------ccEEEEeecccCeeEEEE
Confidence 488888655 357789999999999874
No 5
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=11.63 E-value=90 Score=21.73 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=9.0
Q ss_pred eeeeecCCCC
Q 026536 215 AFYMINPEGA 224 (237)
Q Consensus 215 sfyMinPdg~ 224 (237)
+||+.||||+
T Consensus 112 ~~~~~DPdGn 121 (135)
T 3rri_A 112 TFFLIDPSNN 121 (135)
T ss_dssp EEEEECTTCC
T ss_pred EEEEECCCCC
Confidence 6999999986
No 6
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=11.15 E-value=1.3e+02 Score=24.24 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=20.4
Q ss_pred eEEEEeeccccccccceeeeeEEEEEcCeeeeeeee
Q 026536 121 VRIALESETKTHKKKLLEEFVWAVYCNGRKIGYSIR 156 (237)
Q Consensus 121 vRIaLEcek~~~~~~Ll~ep~WtmyCNGrK~GYAvR 156 (237)
=+|+||-|+ ..|-|-|+|.+-.|..|
T Consensus 66 E~I~lE~E~----------~~~W~eleG~~~~~sLr 91 (122)
T 2nvn_A 66 ERLQIEAES----------ALLWLEAEGFADAYELR 91 (122)
T ss_dssp SCEEEEEEC----------SSEEEEEEEETTEEEEE
T ss_pred hheeeeecC----------ccEEEEeecccCeeEEE
Confidence 378888655 35778999999999987
No 7
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=11.10 E-value=1.2e+02 Score=23.89 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=17.8
Q ss_pred cCceeecCCCcccc---ccCCCCceEeeeee
Q 026536 176 MGAGVLPSPNEKEA---SACTDGELTYMRAR 203 (237)
Q Consensus 176 mGAGVLP~~~~~~~---~~~~dgEl~YMRA~ 203 (237)
||||-.|...-.=+ --.+|+||+|++-.
T Consensus 1 ~~~~~~~~~mi~WPailkl~gddELiYL~s~ 31 (114)
T 2l6o_A 1 MGAGQTPHPQLIWPALLKQQGCNELLPLRTN 31 (114)
T ss_dssp CCSSSCSCSSCCSSEEECCSSCCCCEEESSH
T ss_pred CCCCcccCcCccCCEEEecCCCceeEeecCH
Confidence 78998876531100 02568899999854
No 8
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=10.76 E-value=1e+02 Score=21.73 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=9.2
Q ss_pred ceeeeecCCCC
Q 026536 214 EAFYMINPEGA 224 (237)
Q Consensus 214 EsfyMinPdg~ 224 (237)
..||+.||||+
T Consensus 114 ~~~~~~DPdGn 124 (132)
T 3sk2_A 114 RTFLISDPDGH 124 (132)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 45899999986
No 9
>2xbz_A RETS-hybrid sensor kinase; phosphoprotein, biofilm, transferase; 2.65A {Pseudomonas aeruginosa}
Probab=10.68 E-value=1.6e+02 Score=23.07 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=22.1
Q ss_pred eecccccceEEEEecCCCCCCeEEEecccc
Q 026536 79 IFGFRKGRVCLAIQEDPHCLPMFVIELPML 108 (237)
Q Consensus 79 lFG~RrGrV~~aiQ~dp~~~P~lLLELa~p 108 (237)
-||+.++.+||.+.-..... .++||+.-|
T Consensus 67 n~G~s~s~~Wlr~~L~n~~~-~~~L~i~~p 95 (171)
T 2xbz_A 67 IFPASPQAVWLQVQLPAQKV-PSWLWIFAP 95 (171)
T ss_dssp EECSEEEEEEEEEEECCCSS-CEEEEEECT
T ss_pred ccCCCCCCEEEEEEEEcCCC-ceEEEECCC
Confidence 48999999999998543333 678888777
No 10
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=9.85 E-value=1.1e+02 Score=20.70 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=9.2
Q ss_pred ceeeeecCCCC
Q 026536 214 EAFYMINPEGA 224 (237)
Q Consensus 214 EsfyMinPdg~ 224 (237)
..||+.||||+
T Consensus 113 ~~~~~~DPdG~ 123 (133)
T 3ey7_A 113 TSFYFRDPDGN 123 (133)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 46899999986
Done!