Query 026538
Match_columns 237
No_of_seqs 339 out of 2821
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0218 Predicted GTPase [Gene 100.0 1.6E-29 3.5E-34 195.7 16.5 159 75-233 7-165 (200)
2 COG0486 ThdF Predicted GTPase 100.0 4E-28 8.8E-33 208.3 12.7 174 33-219 161-340 (454)
3 TIGR03598 GTPase_YsxC ribosome 99.9 1.9E-24 4.2E-29 169.4 17.2 155 80-234 6-160 (179)
4 TIGR03156 GTP_HflX GTP-binding 99.9 1.5E-24 3.3E-29 186.1 14.4 201 8-220 106-318 (351)
5 COG2262 HflX GTPases [General 99.9 5.9E-24 1.3E-28 179.9 12.8 202 7-220 108-321 (411)
6 PRK11058 GTPase HflX; Provisio 99.9 1E-23 2.2E-28 184.9 14.4 200 7-218 113-324 (426)
7 PRK00454 engB GTP-binding prot 99.9 5.1E-22 1.1E-26 157.4 19.8 161 73-233 5-165 (196)
8 COG1159 Era GTPase [General fu 99.9 8.5E-23 1.8E-27 166.7 14.5 131 93-229 7-141 (298)
9 PRK05291 trmE tRNA modificatio 99.9 4.1E-23 8.9E-28 182.8 11.8 169 40-218 165-336 (449)
10 COG1160 Predicted GTPases [Gen 99.9 1.7E-22 3.8E-27 173.3 15.1 121 93-218 4-127 (444)
11 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.4E-22 5.2E-27 177.2 14.7 172 33-218 151-325 (442)
12 PF02421 FeoB_N: Ferrous iron 99.9 8.5E-23 1.8E-27 155.0 7.7 132 93-233 1-135 (156)
13 COG1160 Predicted GTPases [Gen 99.9 2.5E-21 5.4E-26 166.2 12.0 140 91-234 177-322 (444)
14 TIGR00436 era GTP-binding prot 99.9 3.8E-20 8.1E-25 154.2 16.7 128 94-228 2-132 (270)
15 PF01926 MMR_HSR1: 50S ribosom 99.8 3.9E-20 8.4E-25 134.8 12.6 113 94-212 1-116 (116)
16 cd01876 YihA_EngB The YihA (En 99.8 3.3E-19 7.1E-24 136.9 17.8 138 95-232 2-139 (170)
17 PRK00089 era GTPase Era; Revie 99.8 4.1E-19 8.9E-24 149.6 17.5 132 93-230 6-141 (292)
18 PRK04213 GTP-binding protein; 99.8 7.2E-19 1.6E-23 140.1 16.8 126 91-219 8-146 (201)
19 PRK15494 era GTPase Era; Provi 99.8 5.7E-19 1.2E-23 151.3 15.6 122 91-218 51-175 (339)
20 PRK00093 GTP-binding protein D 99.8 1E-18 2.2E-23 155.0 17.6 139 91-232 172-313 (435)
21 cd01894 EngA1 EngA1 subfamily. 99.8 1E-18 2.2E-23 133.0 14.7 120 96-221 1-123 (157)
22 PRK03003 GTP-binding protein D 99.8 8.7E-19 1.9E-23 156.6 15.9 121 91-217 37-160 (472)
23 KOG1191 Mitochondrial GTPase [ 99.8 1.4E-19 3.1E-24 155.7 10.2 184 26-218 203-404 (531)
24 cd04171 SelB SelB subfamily. 99.8 2.6E-18 5.7E-23 131.8 16.3 126 94-232 2-133 (164)
25 cd04163 Era Era subfamily. Er 99.8 4.2E-18 9.2E-23 130.3 17.1 133 92-230 3-139 (168)
26 TIGR03594 GTPase_EngA ribosome 99.8 9.2E-19 2E-23 155.0 14.7 120 94-219 1-123 (429)
27 COG1084 Predicted GTPase [Gene 99.8 3.5E-18 7.5E-23 141.1 16.9 149 74-229 147-306 (346)
28 cd01895 EngA2 EngA2 subfamily. 99.8 3.3E-18 7.2E-23 132.0 15.8 138 92-232 2-144 (174)
29 TIGR03594 GTPase_EngA ribosome 99.8 3.3E-18 7.1E-23 151.5 17.6 139 91-232 171-313 (429)
30 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 1.8E-18 4E-23 137.4 14.3 129 93-224 1-137 (196)
31 PRK12298 obgE GTPase CgtA; Rev 99.8 1.7E-18 3.6E-23 150.5 15.1 130 94-231 161-303 (390)
32 PRK03003 GTP-binding protein D 99.8 2.3E-18 5.1E-23 153.8 16.3 136 91-229 210-348 (472)
33 cd01878 HflX HflX subfamily. 99.8 3.5E-18 7.6E-23 136.5 15.6 125 90-221 39-171 (204)
34 PRK00093 GTP-binding protein D 99.8 4.8E-18 1E-22 150.6 16.3 119 93-217 2-123 (435)
35 cd01897 NOG NOG1 is a nucleola 99.8 7E-18 1.5E-22 130.3 14.8 123 93-222 1-132 (168)
36 cd01889 SelB_euk SelB subfamil 99.8 5.7E-18 1.2E-22 134.1 14.5 126 93-231 1-148 (192)
37 cd01898 Obg Obg subfamily. Th 99.8 1.3E-18 2.7E-23 134.6 10.4 125 94-226 2-137 (170)
38 PRK09518 bifunctional cytidyla 99.8 1.1E-17 2.4E-22 156.1 17.3 123 90-218 273-398 (712)
39 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.2E-17 2.5E-22 127.0 14.2 119 93-219 2-123 (157)
40 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.6E-17 3.4E-22 128.1 14.6 110 93-217 1-116 (168)
41 PRK09518 bifunctional cytidyla 99.8 1.7E-17 3.6E-22 154.9 17.4 137 90-229 448-587 (712)
42 cd00881 GTP_translation_factor 99.8 9.9E-18 2.1E-22 131.5 13.2 127 94-233 1-144 (189)
43 PRK12297 obgE GTPase CgtA; Rev 99.8 1.3E-17 2.9E-22 145.8 15.3 116 94-217 160-288 (424)
44 PF00009 GTP_EFTU: Elongation 99.8 2E-17 4.4E-22 130.6 14.7 127 92-232 3-150 (188)
45 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.4E-17 5.1E-22 130.8 15.1 128 93-233 3-149 (195)
46 TIGR02729 Obg_CgtA Obg family 99.7 1.8E-17 3.9E-22 141.2 13.2 131 92-230 157-300 (329)
47 cd01879 FeoB Ferrous iron tran 99.7 1.7E-17 3.7E-22 126.6 11.9 124 97-229 1-127 (158)
48 PRK12299 obgE GTPase CgtA; Rev 99.7 2.7E-17 5.8E-22 140.4 14.2 121 92-220 158-288 (335)
49 cd01850 CDC_Septin CDC/Septin. 99.7 1.3E-16 2.7E-21 133.1 17.4 138 92-234 4-174 (276)
50 cd01853 Toc34_like Toc34-like 99.7 1.4E-16 3.1E-21 130.6 16.7 128 90-219 29-165 (249)
51 cd04166 CysN_ATPS CysN_ATPS su 99.7 4.9E-17 1.1E-21 130.5 13.3 110 94-217 1-144 (208)
52 KOG2486 Predicted GTPase [Gene 99.7 2.7E-17 5.8E-22 132.8 10.8 132 85-216 129-261 (320)
53 cd01890 LepA LepA subfamily. 99.7 8E-17 1.7E-21 125.7 13.3 111 94-217 2-133 (179)
54 cd01891 TypA_BipA TypA (tyrosi 99.7 1.2E-16 2.6E-21 126.8 14.4 111 93-217 3-131 (194)
55 PRK09554 feoB ferrous iron tra 99.7 7.2E-17 1.6E-21 150.6 14.6 133 93-233 4-142 (772)
56 PRK12296 obgE GTPase CgtA; Rev 99.7 9.1E-17 2E-21 142.4 14.5 122 92-221 159-302 (500)
57 cd01885 EF2 EF2 (for archaea a 99.7 4.5E-16 9.7E-21 125.6 16.3 126 94-233 2-161 (222)
58 cd04168 TetM_like Tet(M)-like 99.7 2.5E-16 5.3E-21 128.7 14.1 127 94-234 1-146 (237)
59 cd04154 Arl2 Arl2 subfamily. 99.7 2E-16 4.4E-21 123.0 12.9 113 91-218 13-130 (173)
60 CHL00071 tufA elongation facto 99.7 3.9E-16 8.4E-21 137.2 16.0 130 91-233 11-159 (409)
61 cd01886 EF-G Elongation factor 99.7 2.9E-16 6.3E-21 130.5 14.2 126 94-233 1-145 (270)
62 cd04156 ARLTS1 ARLTS1 subfamil 99.7 2.7E-16 5.8E-21 120.4 12.4 110 94-217 1-115 (160)
63 TIGR00475 selB selenocysteine- 99.7 6.7E-16 1.4E-20 140.8 16.5 126 94-232 2-132 (581)
64 cd04104 p47_IIGP_like p47 (47- 99.7 3.2E-16 6.9E-21 124.7 12.6 116 93-218 2-122 (197)
65 cd01881 Obg_like The Obg-like 99.7 7.2E-17 1.6E-21 125.3 8.7 119 97-223 1-140 (176)
66 cd00880 Era_like Era (E. coli 99.7 8.4E-16 1.8E-20 116.3 14.1 121 97-224 1-125 (163)
67 cd04157 Arl6 Arl6 subfamily. 99.7 5.2E-16 1.1E-20 118.9 13.0 111 94-218 1-119 (162)
68 cd04105 SR_beta Signal recogni 99.7 7E-16 1.5E-20 123.3 14.2 125 93-233 1-139 (203)
69 cd04169 RF3 RF3 subfamily. Pe 99.7 1.1E-15 2.4E-20 126.8 15.3 127 93-233 3-152 (267)
70 smart00178 SAR Sar1p-like memb 99.7 4.9E-16 1.1E-20 122.2 12.6 110 92-216 17-131 (184)
71 cd01893 Miro1 Miro1 subfamily. 99.7 6.1E-16 1.3E-20 119.5 12.9 113 94-219 2-119 (166)
72 cd04149 Arf6 Arf6 subfamily. 99.7 6.6E-16 1.4E-20 119.8 12.7 111 92-217 9-124 (168)
73 cd04138 H_N_K_Ras_like H-Ras/N 99.7 8.7E-16 1.9E-20 117.4 13.1 109 93-217 2-120 (162)
74 cd04161 Arl2l1_Arl13_like Arl2 99.7 9.8E-16 2.1E-20 118.6 13.3 111 94-219 1-116 (167)
75 PRK12317 elongation factor 1-a 99.7 7.2E-16 1.6E-20 136.3 14.2 129 91-232 5-170 (425)
76 PRK12735 elongation factor Tu; 99.7 1.8E-15 3.8E-20 132.5 15.8 130 91-233 11-159 (396)
77 cd01888 eIF2_gamma eIF2-gamma 99.7 2E-15 4.2E-20 120.7 14.7 127 93-232 1-166 (203)
78 PRK12736 elongation factor Tu; 99.7 1.8E-15 3.9E-20 132.4 15.6 130 91-233 11-159 (394)
79 cd04160 Arfrp1 Arfrp1 subfamil 99.7 3.9E-16 8.5E-21 120.3 10.2 112 94-218 1-122 (167)
80 PLN03127 Elongation factor Tu; 99.7 2.3E-15 5E-20 133.2 16.2 129 91-232 60-207 (447)
81 PRK05306 infB translation init 99.7 1.2E-15 2.6E-20 142.0 14.9 113 90-217 288-403 (787)
82 COG0370 FeoB Fe2+ transport sy 99.7 6.1E-16 1.3E-20 138.8 12.4 130 93-233 4-138 (653)
83 cd04165 GTPBP1_like GTPBP1-lik 99.7 4.2E-15 9.1E-20 120.4 16.2 127 94-233 1-168 (224)
84 cd01861 Rab6 Rab6 subfamily. 99.7 1.4E-15 3.1E-20 116.4 12.8 109 94-217 2-119 (161)
85 PF04548 AIG1: AIG1 family; I 99.7 1.3E-15 2.7E-20 122.6 12.9 129 94-226 2-139 (212)
86 cd01864 Rab19 Rab19 subfamily. 99.7 1.7E-15 3.8E-20 116.7 13.2 114 92-218 3-123 (165)
87 TIGR00487 IF-2 translation ini 99.7 2.4E-15 5.1E-20 136.8 16.2 113 90-217 85-201 (587)
88 cd04124 RabL2 RabL2 subfamily. 99.7 9E-16 1.9E-20 118.0 11.5 111 93-216 1-117 (161)
89 PRK10512 selenocysteinyl-tRNA- 99.7 2.9E-15 6.4E-20 137.1 16.8 127 94-233 2-134 (614)
90 cd00878 Arf_Arl Arf (ADP-ribos 99.7 9.4E-16 2E-20 117.2 11.3 111 94-219 1-116 (158)
91 cd00154 Rab Rab family. Rab G 99.7 2.6E-15 5.5E-20 113.9 13.6 110 93-216 1-118 (159)
92 COG3596 Predicted GTPase [Gene 99.7 9.1E-16 2E-20 124.1 11.4 120 91-218 38-163 (296)
93 cd04151 Arl1 Arl1 subfamily. 99.7 1.5E-15 3.3E-20 116.2 12.1 110 94-218 1-115 (158)
94 CHL00189 infB translation init 99.7 1.3E-15 2.7E-20 140.8 13.7 113 90-217 242-361 (742)
95 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 2.2E-15 4.9E-20 117.3 13.2 111 92-217 15-130 (174)
96 TIGR00991 3a0901s02IAP34 GTP-b 99.7 5.4E-15 1.2E-19 123.4 16.1 123 91-218 37-168 (313)
97 cd04150 Arf1_5_like Arf1-Arf5- 99.7 2.1E-15 4.6E-20 115.8 12.7 110 93-217 1-115 (159)
98 PLN03126 Elongation factor Tu; 99.7 3.8E-15 8.2E-20 132.6 16.1 131 90-233 79-228 (478)
99 cd01866 Rab2 Rab2 subfamily. 99.7 2.9E-15 6.2E-20 116.0 13.5 113 92-217 4-123 (168)
100 cd01883 EF1_alpha Eukaryotic e 99.7 2.2E-15 4.7E-20 121.8 13.2 127 94-233 1-171 (219)
101 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.4E-15 2.9E-20 116.8 11.4 110 93-218 3-122 (164)
102 cd04119 RJL RJL (RabJ-Like) su 99.7 3.8E-15 8.2E-20 114.5 13.9 112 93-217 1-124 (168)
103 cd04170 EF-G_bact Elongation f 99.7 2.6E-15 5.7E-20 125.0 13.9 126 94-233 1-145 (268)
104 cd04167 Snu114p Snu114p subfam 99.7 3.7E-15 8.1E-20 119.9 14.1 110 94-216 2-136 (213)
105 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 3.3E-15 7.3E-20 115.3 13.0 111 95-219 2-115 (164)
106 cd04155 Arl3 Arl3 subfamily. 99.6 2.1E-15 4.6E-20 117.0 12.0 117 90-221 12-133 (173)
107 PLN00223 ADP-ribosylation fact 99.6 3.4E-15 7.3E-20 117.2 13.1 113 92-219 17-134 (181)
108 TIGR02528 EutP ethanolamine ut 99.6 1.7E-15 3.7E-20 113.9 10.9 101 94-217 2-102 (142)
109 smart00177 ARF ARF-like small 99.6 3.7E-15 8E-20 116.3 13.2 110 92-217 13-128 (175)
110 cd01868 Rab11_like Rab11-like. 99.6 1.9E-15 4.2E-20 116.3 11.4 114 92-218 3-123 (165)
111 PRK00049 elongation factor Tu; 99.6 5.2E-15 1.1E-19 129.5 15.5 130 91-233 11-159 (396)
112 PTZ00133 ADP-ribosylation fact 99.6 3.7E-15 8E-20 117.1 12.9 111 92-217 17-132 (182)
113 PRK00007 elongation factor G; 99.6 2.9E-15 6.2E-20 139.6 14.3 131 90-234 8-157 (693)
114 cd04158 ARD1 ARD1 subfamily. 99.6 2.4E-15 5.3E-20 116.6 11.6 108 94-217 1-114 (169)
115 TIGR00491 aIF-2 translation in 99.6 5.3E-15 1.1E-19 134.4 15.6 111 91-217 3-135 (590)
116 TIGR00231 small_GTP small GTP- 99.6 3.3E-15 7.2E-20 112.9 12.0 118 93-219 2-124 (161)
117 cd04127 Rab27A Rab27a subfamil 99.6 4.7E-15 1E-19 115.8 13.2 113 92-217 4-134 (180)
118 cd01860 Rab5_related Rab5-rela 99.6 5.3E-15 1.1E-19 113.5 13.2 112 93-217 2-120 (163)
119 cd01867 Rab8_Rab10_Rab13_like 99.6 6.5E-15 1.4E-19 113.8 13.7 113 92-217 3-122 (167)
120 KOG1423 Ras-like GTPase ERA [C 99.6 2.3E-15 4.9E-20 123.1 11.3 127 91-219 71-201 (379)
121 TIGR00485 EF-Tu translation el 99.6 5.8E-15 1.3E-19 129.2 14.8 130 91-233 11-159 (394)
122 PF00735 Septin: Septin; Inte 99.6 5.1E-15 1.1E-19 123.4 13.6 140 93-234 5-173 (281)
123 smart00175 RAB Rab subfamily o 99.6 7.1E-15 1.5E-19 112.7 13.5 110 93-217 1-119 (164)
124 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 8.2E-15 1.8E-19 116.8 14.2 109 93-216 1-123 (201)
125 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 4.9E-15 1.1E-19 116.4 12.6 111 93-217 4-123 (183)
126 PRK09866 hypothetical protein; 99.6 2.3E-14 5E-19 128.5 18.1 72 138-217 230-303 (741)
127 cd04140 ARHI_like ARHI subfami 99.6 6.7E-15 1.5E-19 113.5 13.0 112 93-217 2-122 (165)
128 KOG0084 GTPase Rab1/YPT1, smal 99.6 2.1E-15 4.5E-20 116.0 9.8 117 90-219 7-130 (205)
129 cd01862 Rab7 Rab7 subfamily. 99.6 1.7E-14 3.7E-19 111.5 15.2 112 93-217 1-123 (172)
130 cd04136 Rap_like Rap-like subf 99.6 4.8E-15 1E-19 113.6 12.0 109 93-217 2-120 (163)
131 cd04113 Rab4 Rab4 subfamily. 99.6 5.7E-15 1.2E-19 113.2 12.4 112 93-217 1-119 (161)
132 cd01863 Rab18 Rab18 subfamily. 99.6 5E-15 1.1E-19 113.4 12.1 111 93-216 1-119 (161)
133 cd04106 Rab23_lke Rab23-like s 99.6 5.1E-15 1.1E-19 113.4 12.1 111 93-218 1-121 (162)
134 TIGR00484 EF-G translation elo 99.6 7.7E-15 1.7E-19 136.8 15.6 130 90-233 8-156 (689)
135 cd00879 Sar1 Sar1 subfamily. 99.6 5.5E-15 1.2E-19 116.5 12.4 111 92-217 19-134 (190)
136 cd01865 Rab3 Rab3 subfamily. 99.6 7.3E-15 1.6E-19 113.3 12.8 113 93-218 2-121 (165)
137 cd04116 Rab9 Rab9 subfamily. 99.6 5E-15 1.1E-19 114.6 11.7 113 91-216 4-127 (170)
138 cd04115 Rab33B_Rab33A Rab33B/R 99.6 8.6E-15 1.9E-19 113.5 12.9 115 92-218 2-124 (170)
139 PRK04004 translation initiatio 99.6 1.5E-14 3.3E-19 131.8 16.4 110 91-216 5-136 (586)
140 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 8.1E-15 1.8E-19 113.0 12.6 111 93-218 3-122 (166)
141 smart00173 RAS Ras subfamily o 99.6 6.5E-15 1.4E-19 113.2 11.9 108 94-217 2-119 (164)
142 cd01874 Cdc42 Cdc42 subfamily. 99.6 6.4E-15 1.4E-19 115.0 11.9 110 93-218 2-120 (175)
143 PLN03118 Rab family protein; P 99.6 9.9E-15 2.1E-19 117.3 13.4 114 91-218 13-135 (211)
144 cd04159 Arl10_like Arl10-like 99.6 1.5E-14 3.3E-19 109.7 13.7 111 95-220 2-118 (159)
145 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.3E-14 2.8E-19 111.5 13.4 113 93-219 1-123 (164)
146 PRK12739 elongation factor G; 99.6 6E-15 1.3E-19 137.4 13.7 130 90-233 6-154 (691)
147 cd04122 Rab14 Rab14 subfamily. 99.6 9.9E-15 2.2E-19 112.6 12.7 110 93-218 3-122 (166)
148 cd04142 RRP22 RRP22 subfamily. 99.6 9.2E-15 2E-19 116.4 12.8 118 93-217 1-130 (198)
149 cd04175 Rap1 Rap1 subgroup. T 99.6 7.4E-15 1.6E-19 113.0 11.7 109 93-217 2-120 (164)
150 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 1.7E-14 3.6E-19 112.1 13.8 110 94-218 2-121 (170)
151 cd04110 Rab35 Rab35 subfamily. 99.6 1.7E-14 3.6E-19 114.9 13.9 115 91-218 5-125 (199)
152 cd04132 Rho4_like Rho4-like su 99.6 1.1E-14 2.3E-19 114.6 12.6 110 93-217 1-119 (187)
153 cd04144 Ras2 Ras2 subfamily. 99.6 1.6E-14 3.5E-19 114.1 13.5 108 94-217 1-120 (190)
154 smart00053 DYNc Dynamin, GTPas 99.6 7.6E-14 1.6E-18 113.5 17.6 80 138-219 125-208 (240)
155 PTZ00369 Ras-like protein; Pro 99.6 7.4E-15 1.6E-19 116.0 11.4 113 92-217 5-124 (189)
156 cd04102 RabL3 RabL3 (Rab-like3 99.6 1.7E-14 3.7E-19 115.0 13.5 113 93-218 1-144 (202)
157 TIGR01394 TypA_BipA GTP-bindin 99.6 1.8E-14 3.8E-19 131.4 15.2 112 93-217 2-130 (594)
158 cd04109 Rab28 Rab28 subfamily. 99.6 1.3E-14 2.8E-19 116.9 12.9 110 93-217 1-123 (215)
159 cd04131 Rnd Rnd subfamily. Th 99.6 9.6E-15 2.1E-19 114.3 11.7 109 93-217 2-119 (178)
160 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 2.7E-14 5.9E-19 111.1 14.1 112 93-217 3-121 (172)
161 cd04139 RalA_RalB RalA/RalB su 99.6 1E-14 2.2E-19 111.8 11.5 109 93-217 1-119 (164)
162 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1.2E-14 2.7E-19 114.1 12.2 113 91-216 4-122 (182)
163 cd04120 Rab12 Rab12 subfamily. 99.6 1.1E-14 2.5E-19 116.1 12.2 109 94-218 2-120 (202)
164 TIGR00437 feoB ferrous iron tr 99.6 6.9E-15 1.5E-19 134.3 12.1 124 99-231 1-127 (591)
165 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 1.7E-14 3.8E-19 117.2 13.1 113 91-216 12-130 (232)
166 PLN03071 GTP-binding nuclear p 99.6 1.1E-14 2.4E-19 117.7 11.9 115 90-217 11-131 (219)
167 cd00877 Ran Ran (Ras-related n 99.6 1.1E-14 2.4E-19 112.6 11.4 111 93-216 1-117 (166)
168 cd04118 Rab24 Rab24 subfamily. 99.6 1.7E-14 3.7E-19 114.1 12.5 112 93-217 1-119 (193)
169 cd01882 BMS1 Bms1. Bms1 is an 99.6 7.2E-14 1.6E-18 113.4 16.4 124 91-232 38-163 (225)
170 PRK15467 ethanolamine utilizat 99.6 1.1E-14 2.3E-19 111.9 10.9 103 94-217 3-105 (158)
171 PLN03110 Rab GTPase; Provision 99.6 2.7E-14 5.8E-19 115.2 13.5 114 91-217 11-131 (216)
172 cd04112 Rab26 Rab26 subfamily. 99.6 4E-14 8.6E-19 112.0 14.1 111 93-217 1-120 (191)
173 PF09439 SRPRB: Signal recogni 99.6 5.7E-15 1.2E-19 114.6 9.0 129 92-234 3-143 (181)
174 PLN00023 GTP-binding protein; 99.6 2.5E-14 5.5E-19 120.1 13.5 119 87-218 16-166 (334)
175 cd04134 Rho3 Rho3 subfamily. 99.6 1.2E-14 2.5E-19 114.9 11.0 114 94-220 2-121 (189)
176 KOG0410 Predicted GTP binding 99.6 1.4E-15 3E-20 125.2 5.7 195 9-216 97-307 (410)
177 cd04176 Rap2 Rap2 subgroup. T 99.6 1.9E-14 4E-19 110.6 11.7 109 93-217 2-120 (163)
178 cd04147 Ras_dva Ras-dva subfam 99.6 1.2E-14 2.5E-19 115.7 10.9 108 94-217 1-118 (198)
179 cd04121 Rab40 Rab40 subfamily. 99.6 1.6E-14 3.4E-19 114.1 11.5 114 91-217 5-124 (189)
180 cd04123 Rab21 Rab21 subfamily. 99.6 4.7E-14 1E-18 107.7 13.6 111 93-218 1-120 (162)
181 PF10662 PduV-EutP: Ethanolami 99.6 2.4E-14 5.3E-19 106.6 11.5 113 93-229 2-116 (143)
182 PRK10218 GTP-binding protein; 99.6 4.6E-14 9.9E-19 128.7 15.7 128 91-232 4-148 (607)
183 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 4.7E-14 1E-18 108.4 13.1 115 92-223 22-148 (221)
184 cd00157 Rho Rho (Ras homology) 99.6 1E-14 2.3E-19 112.6 9.6 112 93-220 1-121 (171)
185 cd04126 Rab20 Rab20 subfamily. 99.6 4.3E-14 9.3E-19 114.1 13.5 109 93-217 1-114 (220)
186 TIGR01393 lepA GTP-binding pro 99.6 3.3E-14 7.2E-19 129.9 14.3 113 92-217 3-136 (595)
187 cd01896 DRG The developmentall 99.6 3.5E-14 7.6E-19 115.7 13.0 85 94-186 2-89 (233)
188 PRK05506 bifunctional sulfate 99.6 3.9E-14 8.5E-19 130.9 14.9 126 91-230 23-186 (632)
189 cd04114 Rab30 Rab30 subfamily. 99.6 3.1E-14 6.8E-19 109.9 12.1 113 92-219 7-128 (169)
190 TIGR00483 EF-1_alpha translati 99.6 4.9E-14 1.1E-18 124.7 14.9 129 91-232 6-172 (426)
191 cd04125 RabA_like RabA-like su 99.6 2.2E-14 4.8E-19 113.0 11.4 112 93-217 1-119 (188)
192 cd01892 Miro2 Miro2 subfamily. 99.6 2.9E-14 6.3E-19 110.6 11.9 113 91-218 3-123 (169)
193 PRK00741 prfC peptide chain re 99.6 5.1E-14 1.1E-18 126.8 15.0 129 91-233 9-160 (526)
194 cd04133 Rop_like Rop subfamily 99.6 3.2E-14 7E-19 111.1 12.0 112 93-217 2-119 (176)
195 cd01871 Rac1_like Rac1-like su 99.6 3.9E-14 8.5E-19 110.4 12.3 112 93-217 2-119 (174)
196 cd04177 RSR1 RSR1 subgroup. R 99.6 1.5E-14 3.4E-19 111.8 10.0 113 93-218 2-121 (168)
197 smart00174 RHO Rho (Ras homolo 99.6 1.6E-14 3.4E-19 112.1 9.8 108 95-217 1-116 (174)
198 TIGR03680 eif2g_arch translati 99.6 4.4E-14 9.6E-19 124.1 13.6 127 92-232 4-163 (406)
199 KOG1489 Predicted GTP-binding 99.6 1.8E-14 3.9E-19 118.5 10.1 132 92-233 196-340 (366)
200 TIGR00503 prfC peptide chain r 99.6 6E-14 1.3E-18 126.4 14.3 129 91-233 10-161 (527)
201 TIGR02034 CysN sulfate adenyly 99.6 7.9E-14 1.7E-18 122.5 14.7 111 94-217 2-147 (406)
202 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 6.4E-14 1.4E-18 113.2 13.0 112 93-217 2-119 (222)
203 cd04117 Rab15 Rab15 subfamily. 99.6 9.5E-14 2.1E-18 106.8 13.3 110 94-218 2-120 (161)
204 PRK05124 cysN sulfate adenylyl 99.6 9.9E-14 2.2E-18 123.8 15.2 114 91-217 26-174 (474)
205 cd04137 RheB Rheb (Ras Homolog 99.6 4.4E-14 9.5E-19 110.4 11.5 109 93-217 2-120 (180)
206 cd01875 RhoG RhoG subfamily. 99.6 6.2E-14 1.3E-18 111.0 12.3 113 93-218 4-122 (191)
207 PTZ00416 elongation factor 2; 99.6 8.6E-14 1.9E-18 131.8 15.4 112 91-216 18-157 (836)
208 cd04111 Rab39 Rab39 subfamily. 99.6 6.2E-14 1.3E-18 112.7 12.3 110 93-217 3-123 (211)
209 cd00876 Ras Ras family. The R 99.6 7.3E-14 1.6E-18 106.4 12.1 108 94-217 1-118 (160)
210 PRK04000 translation initiatio 99.6 8E-14 1.7E-18 122.5 13.9 128 91-231 8-167 (411)
211 KOG0092 GTPase Rab5/YPT51 and 99.6 9.4E-15 2E-19 112.0 6.8 115 92-219 5-126 (200)
212 TIGR00993 3a0901s04IAP86 chlor 99.6 3.9E-13 8.4E-18 121.1 18.1 126 91-218 117-251 (763)
213 PRK05433 GTP-binding protein L 99.5 1E-13 2.3E-18 126.8 14.5 114 91-217 6-140 (600)
214 PRK13351 elongation factor G; 99.5 9.1E-14 2E-18 129.7 14.4 131 90-234 6-155 (687)
215 KOG0078 GTP-binding protein SE 99.5 7.6E-14 1.7E-18 108.7 11.5 114 90-220 10-134 (207)
216 cd04128 Spg1 Spg1p. Spg1p (se 99.5 9.8E-14 2.1E-18 109.0 12.4 110 93-216 1-117 (182)
217 cd04135 Tc10 TC10 subfamily. 99.5 4.3E-14 9.3E-19 109.7 10.1 110 93-218 1-119 (174)
218 cd01870 RhoA_like RhoA-like su 99.5 6.1E-14 1.3E-18 109.0 10.8 113 93-218 2-120 (175)
219 cd04146 RERG_RasL11_like RERG/ 99.5 5.6E-14 1.2E-18 108.2 10.4 109 94-217 1-120 (165)
220 KOG1490 GTP-binding protein CR 99.5 4.5E-14 9.7E-19 122.2 10.7 147 81-233 155-311 (620)
221 cd04130 Wrch_1 Wrch-1 subfamil 99.5 2.9E-14 6.4E-19 110.8 8.9 110 93-218 1-119 (173)
222 PF08477 Miro: Miro-like prote 99.5 2.6E-14 5.6E-19 104.1 8.1 108 94-214 1-119 (119)
223 cd04148 RGK RGK subfamily. Th 99.5 6.1E-14 1.3E-18 113.5 10.9 112 93-218 1-121 (221)
224 cd04143 Rhes_like Rhes_like su 99.5 9.6E-14 2.1E-18 114.1 12.0 109 93-217 1-127 (247)
225 PLN03108 Rab family protein; P 99.5 1.9E-13 4.1E-18 109.8 13.5 113 92-217 6-125 (210)
226 PLN00116 translation elongatio 99.5 2.4E-13 5.3E-18 129.0 15.9 113 90-216 17-163 (843)
227 COG5019 CDC3 Septin family pro 99.5 3.3E-13 7.2E-18 113.4 14.8 142 91-234 22-193 (373)
228 PTZ00141 elongation factor 1- 99.5 2.3E-13 4.9E-18 120.7 14.7 130 91-233 6-179 (446)
229 COG0536 Obg Predicted GTPase [ 99.5 5.7E-14 1.2E-18 116.8 10.1 130 94-231 161-304 (369)
230 PF00350 Dynamin_N: Dynamin fa 99.5 6.7E-14 1.4E-18 108.2 9.9 66 139-213 102-168 (168)
231 KOG1547 Septin CDC10 and relat 99.5 2.7E-13 5.8E-18 107.6 13.2 141 91-234 45-215 (336)
232 PF00025 Arf: ADP-ribosylation 99.5 2.7E-14 5.7E-19 111.5 7.2 114 91-219 13-131 (175)
233 KOG0073 GTP-binding ADP-ribosy 99.5 2E-13 4.3E-18 102.0 10.9 111 92-217 16-131 (185)
234 KOG0087 GTPase Rab11/YPT3, sma 99.5 5.1E-14 1.1E-18 109.4 7.3 114 90-217 12-133 (222)
235 KOG2655 Septin family protein 99.5 3.7E-13 8E-18 113.9 12.8 142 91-234 20-189 (366)
236 KOG1145 Mitochondrial translat 99.5 5.4E-13 1.2E-17 116.7 13.9 113 90-217 151-267 (683)
237 COG0532 InfB Translation initi 99.5 6.1E-13 1.3E-17 116.6 14.2 112 91-217 4-121 (509)
238 KOG1954 Endocytosis/signaling 99.5 1.2E-12 2.5E-17 109.8 14.5 142 90-235 56-243 (532)
239 smart00176 RAN Ran (Ras-relate 99.5 3E-13 6.5E-18 107.7 10.7 106 98-216 1-112 (200)
240 KOG0098 GTPase Rab2, small G p 99.5 2.8E-13 6E-18 103.4 9.9 115 91-219 5-127 (216)
241 PTZ00327 eukaryotic translatio 99.5 6.3E-13 1.4E-17 117.7 13.4 129 91-233 33-201 (460)
242 KOG0095 GTPase Rab30, small G 99.5 9.8E-13 2.1E-17 96.9 12.0 113 92-221 7-130 (213)
243 COG1100 GTPase SAR1 and relate 99.5 1.4E-12 3E-17 105.1 13.9 113 93-220 6-128 (219)
244 COG2229 Predicted GTPase [Gene 99.5 1.8E-12 3.8E-17 99.0 12.8 122 91-225 9-143 (187)
245 KOG0394 Ras-related GTPase [Ge 99.5 3.6E-13 7.8E-18 102.5 8.7 115 90-217 7-132 (210)
246 cd00882 Ras_like_GTPase Ras-li 99.5 5.4E-13 1.2E-17 99.5 9.5 110 97-221 1-120 (157)
247 PTZ00132 GTP-binding nuclear p 99.4 2.6E-12 5.6E-17 103.4 13.5 115 90-217 7-127 (215)
248 cd01899 Ygr210 Ygr210 subfamil 99.4 1.8E-12 3.9E-17 109.9 12.9 83 95-185 1-110 (318)
249 cd04103 Centaurin_gamma Centau 99.4 8E-13 1.7E-17 101.4 9.8 105 94-216 2-112 (158)
250 TIGR00490 aEF-2 translation el 99.4 1.2E-12 2.6E-17 122.6 12.7 113 91-216 18-151 (720)
251 COG1163 DRG Predicted GTPase [ 99.4 8.7E-13 1.9E-17 109.0 10.3 92 88-187 59-153 (365)
252 PRK07560 elongation factor EF- 99.4 3.7E-12 8.1E-17 119.5 14.8 113 91-216 19-152 (731)
253 PLN00043 elongation factor 1-a 99.4 4.8E-12 1E-16 112.2 14.3 130 91-233 6-179 (447)
254 TIGR02836 spore_IV_A stage IV 99.4 3.9E-12 8.4E-17 109.1 13.0 125 90-216 15-193 (492)
255 PTZ00258 GTP-binding protein; 99.4 1.1E-12 2.3E-17 113.5 9.6 88 90-185 19-126 (390)
256 COG4108 PrfC Peptide chain rel 99.4 1.5E-12 3.4E-17 111.2 10.1 129 93-235 13-164 (528)
257 KOG0080 GTPase Rab18, small G 99.4 9.5E-13 2.1E-17 98.1 7.7 108 92-216 11-130 (209)
258 cd01873 RhoBTB RhoBTB subfamil 99.4 1.4E-12 3.1E-17 103.5 9.2 110 93-217 3-134 (195)
259 PF05049 IIGP: Interferon-indu 99.4 9.1E-13 2E-17 112.8 8.5 112 93-215 36-153 (376)
260 cd01858 NGP_1 NGP-1. Autoanti 99.4 8.3E-13 1.8E-17 101.2 7.5 56 92-148 102-157 (157)
261 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 5.5E-12 1.2E-16 102.1 12.5 132 94-234 1-142 (232)
262 cd04129 Rho2 Rho2 subfamily. 99.4 3.1E-12 6.7E-17 100.8 10.4 110 93-217 2-119 (187)
263 PF00071 Ras: Ras family; Int 99.4 2.5E-12 5.4E-17 98.5 9.6 111 94-217 1-118 (162)
264 COG5256 TEF1 Translation elong 99.4 1.2E-11 2.6E-16 105.5 14.3 127 91-230 6-174 (428)
265 TIGR03597 GTPase_YqeH ribosome 99.4 4E-13 8.6E-18 116.2 5.5 136 93-231 155-294 (360)
266 KOG0462 Elongation factor-type 99.4 3E-12 6.6E-17 112.1 10.6 133 87-233 55-206 (650)
267 cd04178 Nucleostemin_like Nucl 99.4 1.3E-12 2.7E-17 101.6 7.2 57 91-148 116-172 (172)
268 KOG0079 GTP-binding protein H- 99.4 3.1E-12 6.7E-17 94.1 8.7 111 92-217 8-126 (198)
269 COG0480 FusA Translation elong 99.4 5.7E-12 1.2E-16 116.1 12.5 130 90-233 8-157 (697)
270 cd01900 YchF YchF subfamily. 99.4 1.6E-12 3.5E-17 107.8 7.6 83 95-185 1-103 (274)
271 PRK12740 elongation factor G; 99.4 1E-11 2.3E-16 115.7 13.8 122 98-233 1-141 (668)
272 KOG0090 Signal recognition par 99.4 6.7E-12 1.5E-16 98.0 9.9 129 92-234 38-176 (238)
273 COG1217 TypA Predicted membran 99.3 1.2E-11 2.5E-16 106.7 12.0 114 91-217 4-134 (603)
274 PRK09601 GTP-binding protein Y 99.3 3.6E-12 7.8E-17 109.1 9.0 85 93-185 3-107 (364)
275 KOG0093 GTPase Rab3, small G p 99.3 1.6E-11 3.5E-16 90.2 10.9 115 91-218 20-141 (193)
276 KOG0075 GTP-binding ADP-ribosy 99.3 9.6E-12 2.1E-16 91.4 8.3 111 93-220 21-139 (186)
277 KOG0086 GTPase Rab4, small G p 99.3 4.7E-11 1E-15 88.4 11.2 118 91-221 8-132 (214)
278 KOG0074 GTP-binding ADP-ribosy 99.3 1.4E-11 3.1E-16 90.0 8.0 119 91-223 16-139 (185)
279 KOG1532 GTPase XAB1, interacts 99.3 2.3E-11 5E-16 98.5 9.7 88 138-230 116-208 (366)
280 KOG0070 GTP-binding ADP-ribosy 99.3 9.5E-12 2.1E-16 95.1 6.4 115 91-220 16-135 (181)
281 COG1161 Predicted GTPases [Gen 99.3 9.1E-12 2E-16 106.0 6.9 60 91-151 131-190 (322)
282 cd01857 HSR1_MMR1 HSR1/MMR1. 99.3 1.7E-11 3.7E-16 92.2 7.0 55 94-149 85-139 (141)
283 PRK09602 translation-associate 99.3 2.6E-11 5.7E-16 105.8 9.2 85 93-185 2-113 (396)
284 PRK09563 rbgA GTPase YlqF; Rev 99.2 2.6E-11 5.6E-16 101.9 8.1 62 90-152 119-180 (287)
285 cd01849 YlqF_related_GTPase Yl 99.2 2.1E-11 4.6E-16 93.2 6.9 58 90-148 98-155 (155)
286 cd01855 YqeH YqeH. YqeH is an 99.2 1.8E-11 3.9E-16 96.7 6.5 57 92-148 127-190 (190)
287 COG4917 EutP Ethanolamine util 99.2 3.9E-11 8.5E-16 86.0 7.4 116 93-230 2-117 (148)
288 KOG0461 Selenocysteine-specifi 99.2 2.9E-10 6.4E-15 94.9 12.8 130 91-233 6-152 (522)
289 PRK13768 GTPase; Provisional 99.2 1.2E-10 2.6E-15 96.1 10.1 84 138-226 97-185 (253)
290 COG2895 CysN GTPases - Sulfate 99.2 4E-10 8.7E-15 94.3 12.9 127 91-230 5-168 (431)
291 TIGR03596 GTPase_YlqF ribosome 99.2 4.9E-11 1.1E-15 99.7 7.1 60 91-151 117-176 (276)
292 COG3276 SelB Selenocysteine-sp 99.2 5.3E-10 1.2E-14 96.2 13.4 126 94-232 2-132 (447)
293 KOG0458 Elongation factor 1 al 99.2 5.5E-10 1.2E-14 98.8 13.4 135 90-237 175-351 (603)
294 KOG0395 Ras-related GTPase [Ge 99.1 1.8E-10 3.9E-15 91.3 8.6 113 92-217 3-122 (196)
295 KOG0077 Vesicle coat complex C 99.1 2.6E-10 5.7E-15 85.6 8.8 111 93-219 21-137 (193)
296 cd01856 YlqF YlqF. Proteins o 99.1 1.9E-10 4E-15 89.4 7.7 58 90-148 113-170 (171)
297 KOG0091 GTPase Rab39, small G 99.1 2.6E-10 5.5E-15 85.5 7.9 113 92-221 8-134 (213)
298 COG0481 LepA Membrane GTPase L 99.1 2.2E-10 4.7E-15 99.2 8.7 130 90-233 7-157 (603)
299 KOG0071 GTP-binding ADP-ribosy 99.1 4E-10 8.7E-15 82.3 8.7 116 92-223 17-138 (180)
300 KOG1144 Translation initiation 99.1 2.6E-10 5.6E-15 103.0 8.6 111 91-216 474-605 (1064)
301 KOG0468 U5 snRNP-specific prot 99.1 5.5E-10 1.2E-14 99.9 10.6 129 91-232 127-284 (971)
302 KOG4252 GTP-binding protein [S 99.1 7.7E-11 1.7E-15 89.5 4.4 116 91-219 19-140 (246)
303 KOG0467 Translation elongation 99.1 1.3E-09 2.8E-14 98.8 12.2 127 90-230 7-157 (887)
304 KOG1707 Predicted Ras related/ 99.1 8.8E-10 1.9E-14 97.5 10.9 113 92-217 9-129 (625)
305 PRK14845 translation initiatio 99.1 1.5E-09 3.3E-14 104.0 12.9 100 103-217 472-592 (1049)
306 COG0012 Predicted GTPase, prob 99.1 2.1E-10 4.6E-15 97.2 6.4 86 92-185 2-108 (372)
307 PRK12289 GTPase RsgA; Reviewed 99.1 2.9E-10 6.2E-15 97.7 7.3 57 94-151 174-237 (352)
308 PRK13796 GTPase YqeH; Provisio 99.1 2.2E-10 4.8E-15 99.3 6.6 58 93-150 161-222 (365)
309 PRK12288 GTPase RsgA; Reviewed 99.1 4.3E-10 9.4E-15 96.6 8.0 71 94-165 207-288 (347)
310 PF03193 DUF258: Protein of un 99.1 1.1E-10 2.4E-15 89.0 3.8 59 93-151 36-100 (161)
311 COG0050 TufB GTPases - transla 99.1 3.1E-09 6.6E-14 87.1 12.2 130 91-233 11-159 (394)
312 cd01859 MJ1464 MJ1464. This f 99.1 5.9E-10 1.3E-14 85.2 7.6 57 91-148 100-156 (156)
313 KOG0088 GTPase Rab21, small G 99.0 2E-10 4.4E-15 85.5 4.5 116 91-219 12-134 (218)
314 KOG1424 Predicted GTP-binding 99.0 2.6E-10 5.7E-15 99.5 5.5 59 92-151 314-372 (562)
315 KOG0097 GTPase Rab14, small G 99.0 4.4E-09 9.5E-14 77.0 10.0 111 91-217 10-130 (215)
316 KOG0076 GTP-binding ADP-ribosy 99.0 2.1E-09 4.5E-14 81.4 8.3 120 92-225 17-148 (197)
317 KOG3883 Ras family small GTPas 99.0 4.9E-09 1.1E-13 77.8 9.9 118 91-221 8-136 (198)
318 PF03029 ATP_bind_1: Conserved 99.0 2E-09 4.4E-14 87.9 8.1 76 139-219 92-172 (238)
319 TIGR00157 ribosome small subun 99.0 1.1E-09 2.3E-14 90.0 6.5 70 93-164 121-201 (245)
320 KOG1491 Predicted GTP-binding 99.0 1.3E-09 2.9E-14 90.8 6.7 87 91-185 19-125 (391)
321 KOG0081 GTPase Rab27, small G 99.0 1.6E-09 3.4E-14 80.9 6.4 116 93-221 10-142 (219)
322 KOG0448 Mitofusin 1 GTPase, in 99.0 8.7E-09 1.9E-13 92.8 11.8 71 138-218 206-276 (749)
323 KOG2485 Conserved ATP/GTP bind 98.9 2.8E-09 6.1E-14 88.0 8.0 131 17-151 58-209 (335)
324 COG5192 BMS1 GTP-binding prote 98.9 9.9E-09 2.2E-13 90.7 11.3 123 91-231 68-192 (1077)
325 TIGR03348 VI_IcmF type VI secr 98.9 1.5E-08 3.2E-13 99.7 12.5 152 61-216 81-256 (1169)
326 cd01851 GBP Guanylate-binding 98.9 3.1E-08 6.7E-13 80.3 12.4 89 91-185 6-102 (224)
327 PRK09435 membrane ATPase/prote 98.9 3.1E-08 6.7E-13 84.4 12.7 77 137-233 148-224 (332)
328 KOG3859 Septins (P-loop GTPase 98.9 7.3E-09 1.6E-13 84.3 8.3 141 92-233 42-206 (406)
329 PRK00098 GTPase RsgA; Reviewed 98.9 5.4E-09 1.2E-13 88.3 7.7 57 93-150 165-228 (298)
330 COG1162 Predicted GTPases [Gen 98.9 4.4E-09 9.4E-14 87.3 6.9 71 94-164 166-246 (301)
331 KOG0083 GTPase Rab26/Rab37, sm 98.9 1E-09 2.2E-14 79.6 2.6 107 96-218 1-118 (192)
332 KOG3886 GTP-binding protein [S 98.9 1.6E-08 3.4E-13 80.3 8.8 123 93-229 5-142 (295)
333 KOG0393 Ras-related small GTPa 98.8 4E-09 8.8E-14 82.6 5.1 112 92-218 4-124 (198)
334 COG5257 GCD11 Translation init 98.8 3.1E-08 6.8E-13 82.2 10.5 129 91-233 9-170 (415)
335 COG5258 GTPBP1 GTPase [General 98.8 5.5E-08 1.2E-12 82.6 11.4 133 90-234 115-286 (527)
336 TIGR01425 SRP54_euk signal rec 98.8 1.9E-07 4.1E-12 82.0 15.1 114 93-216 101-252 (429)
337 KOG1486 GTP-binding protein DR 98.8 8.8E-09 1.9E-13 82.8 6.1 90 90-187 60-152 (364)
338 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2.3E-08 4.9E-13 84.1 7.8 58 93-150 162-225 (287)
339 TIGR00092 GTP-binding protein 98.8 1.4E-08 2.9E-13 87.3 6.2 86 93-185 3-108 (368)
340 KOG0460 Mitochondrial translat 98.8 1.7E-07 3.7E-12 78.5 12.1 131 91-234 53-202 (449)
341 TIGR00750 lao LAO/AO transport 98.7 4.6E-07 9.9E-12 76.7 14.6 24 91-114 33-56 (300)
342 TIGR00073 hypB hydrogenase acc 98.7 6.1E-08 1.3E-12 77.6 8.7 29 87-115 17-45 (207)
343 cd03112 CobW_like The function 98.7 7.8E-08 1.7E-12 73.7 8.2 114 93-215 1-158 (158)
344 KOG2484 GTPase [General functi 98.7 9.5E-09 2.1E-13 87.4 3.2 59 91-150 251-309 (435)
345 COG3523 IcmF Type VI protein s 98.7 2.1E-07 4.5E-12 90.0 11.1 127 89-217 122-270 (1188)
346 KOG0464 Elongation factor G [T 98.6 3.8E-08 8.3E-13 84.3 5.0 128 92-233 37-183 (753)
347 KOG1143 Predicted translation 98.6 1.4E-07 3E-12 79.9 8.2 128 93-233 168-333 (591)
348 KOG0072 GTP-binding ADP-ribosy 98.6 1.6E-07 3.5E-12 69.2 7.4 112 92-218 18-134 (182)
349 PF02492 cobW: CobW/HypB/UreG, 98.6 3.1E-07 6.7E-12 71.8 9.0 116 93-219 1-157 (178)
350 KOG2423 Nucleolar GTPase [Gene 98.6 1.6E-08 3.5E-13 86.0 1.6 61 90-151 305-365 (572)
351 COG0523 Putative GTPases (G3E 98.6 8.4E-07 1.8E-11 75.4 11.5 127 93-228 2-170 (323)
352 TIGR02475 CobW cobalamin biosy 98.5 9.9E-07 2.1E-11 75.9 11.0 132 91-231 3-201 (341)
353 KOG0465 Mitochondrial elongati 98.5 1.7E-07 3.8E-12 83.6 6.3 130 90-233 37-185 (721)
354 PF03308 ArgK: ArgK protein; 98.5 7.3E-07 1.6E-11 72.6 9.1 104 91-216 28-180 (266)
355 KOG0447 Dynamin-like GTP bindi 98.5 1E-06 2.2E-11 78.1 10.4 76 139-217 413-493 (980)
356 KOG0096 GTPase Ran/TC4/GSP1 (n 98.5 3.2E-07 6.9E-12 70.7 5.9 115 92-219 10-130 (216)
357 KOG2743 Cobalamin synthesis pr 98.5 1.8E-06 4E-11 71.2 10.6 136 87-230 52-238 (391)
358 PRK10416 signal recognition pa 98.4 8.3E-06 1.8E-10 69.5 14.3 123 91-217 113-273 (318)
359 PRK11537 putative GTP-binding 98.4 6.2E-06 1.3E-10 70.3 13.5 120 91-218 3-165 (318)
360 PF00448 SRP54: SRP54-type pro 98.4 2.4E-06 5.1E-11 67.8 9.9 114 94-217 3-154 (196)
361 TIGR00064 ftsY signal recognit 98.4 1.5E-05 3.3E-10 66.4 14.9 77 137-217 154-231 (272)
362 KOG0469 Elongation factor 2 [T 98.4 9.6E-07 2.1E-11 77.5 7.4 126 91-230 18-183 (842)
363 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.7E-06 3.6E-11 65.0 7.6 56 173-228 10-67 (141)
364 PRK14722 flhF flagellar biosyn 98.4 3.8E-06 8.2E-11 72.7 10.5 24 92-115 137-160 (374)
365 PTZ00099 rab6; Provisional 98.4 1.5E-06 3.3E-11 67.8 7.1 68 137-217 28-99 (176)
366 COG1703 ArgK Putative periplas 98.3 6.8E-06 1.5E-10 68.1 10.6 24 91-114 50-73 (323)
367 PRK14974 cell division protein 98.3 8.5E-06 1.8E-10 69.8 10.6 72 137-217 222-293 (336)
368 cd01858 NGP_1 NGP-1. Autoanti 98.3 2.7E-06 5.9E-11 65.0 6.8 57 173-229 7-65 (157)
369 KOG0463 GTP-binding protein GP 98.2 5.4E-06 1.2E-10 70.5 8.5 84 139-233 220-303 (641)
370 PRK00771 signal recognition pa 98.2 2.1E-05 4.4E-10 69.7 12.1 23 92-114 95-117 (437)
371 KOG3905 Dynein light intermedi 98.2 5.6E-05 1.2E-09 63.3 13.3 27 90-116 50-76 (473)
372 cd00066 G-alpha G protein alph 98.2 4.2E-06 9.1E-11 71.4 7.0 67 137-216 160-241 (317)
373 PRK11889 flhF flagellar biosyn 98.2 3.4E-05 7.5E-10 67.0 12.0 117 92-217 241-391 (436)
374 PRK10463 hydrogenase nickel in 98.2 9.1E-06 2E-10 67.9 8.3 28 88-115 100-127 (290)
375 cd03114 ArgK-like The function 98.2 1.6E-05 3.4E-10 60.3 9.0 20 95-114 2-21 (148)
376 PRK14721 flhF flagellar biosyn 98.2 1.7E-05 3.6E-10 69.8 10.2 25 91-115 190-214 (420)
377 PRK12727 flagellar biosynthesi 98.1 1.6E-05 3.4E-10 71.5 9.7 116 91-216 349-497 (559)
378 KOG0780 Signal recognition par 98.1 3.2E-05 6.8E-10 66.2 10.8 44 71-114 80-123 (483)
379 cd01859 MJ1464 MJ1464. This f 98.1 1.7E-05 3.6E-10 60.4 8.3 58 161-221 2-59 (156)
380 cd04178 Nucleostemin_like Nucl 98.1 8.4E-06 1.8E-10 63.3 6.7 56 176-231 1-58 (172)
381 cd03115 SRP The signal recogni 98.1 5.5E-05 1.2E-09 58.6 11.1 71 137-217 82-153 (173)
382 PRK10867 signal recognition pa 98.1 5.8E-05 1.3E-09 66.8 12.3 71 137-216 183-253 (433)
383 KOG1487 GTP-binding protein DR 98.1 3.9E-06 8.5E-11 68.0 4.3 89 92-188 59-150 (358)
384 PRK01889 GTPase RsgA; Reviewed 98.0 5.8E-06 1.3E-10 71.6 5.0 57 93-150 196-259 (356)
385 TIGR00959 ffh signal recogniti 98.0 9.2E-05 2E-09 65.5 12.5 71 137-216 182-252 (428)
386 PRK12724 flagellar biosynthesi 98.0 6.1E-05 1.3E-09 66.0 10.8 118 93-216 224-372 (432)
387 TIGR00101 ureG urease accessor 98.0 8.6E-05 1.9E-09 59.1 10.4 23 93-115 2-24 (199)
388 PRK12723 flagellar biosynthesi 98.0 9.8E-05 2.1E-09 64.5 11.4 23 92-114 174-196 (388)
389 PRK12726 flagellar biosynthesi 98.0 3.9E-05 8.4E-10 66.4 8.7 24 91-114 205-228 (407)
390 cd02038 FleN-like FleN is a me 98.0 9E-05 1.9E-09 55.5 9.7 111 96-230 4-122 (139)
391 KOG1534 Putative transcription 98.0 3.2E-05 6.9E-10 61.0 7.3 77 138-218 98-179 (273)
392 cd01849 YlqF_related_GTPase Yl 98.0 3.2E-05 7E-10 58.9 7.1 53 176-228 1-54 (155)
393 COG1419 FlhF Flagellar GTP-bin 97.9 6E-05 1.3E-09 65.3 9.2 117 92-217 203-352 (407)
394 PRK14723 flhF flagellar biosyn 97.9 6.3E-05 1.4E-09 70.5 9.8 23 93-115 186-208 (767)
395 PRK05703 flhF flagellar biosyn 97.9 0.0001 2.2E-09 65.3 10.7 117 92-217 221-371 (424)
396 KOG1673 Ras GTPases [General f 97.9 7.5E-05 1.6E-09 56.0 8.0 112 92-216 20-137 (205)
397 COG0552 FtsY Signal recognitio 97.9 0.00011 2.4E-09 62.0 9.9 120 92-215 139-296 (340)
398 TIGR03596 GTPase_YlqF ribosome 97.9 5.1E-05 1.1E-09 63.5 8.1 55 172-228 19-73 (276)
399 COG0541 Ffh Signal recognition 97.8 0.0005 1.1E-08 60.0 13.1 44 71-114 79-122 (451)
400 KOG0466 Translation initiation 97.8 4.4E-05 9.6E-10 63.4 6.4 130 91-233 37-209 (466)
401 PF05783 DLIC: Dynein light in 97.8 0.00051 1.1E-08 61.5 13.3 26 91-116 24-49 (472)
402 PRK06731 flhF flagellar biosyn 97.8 0.00046 1E-08 57.4 12.2 118 91-217 74-225 (270)
403 cd01856 YlqF YlqF. Proteins o 97.8 0.0001 2.2E-09 57.1 7.5 48 172-221 17-64 (171)
404 COG3640 CooC CO dehydrogenase 97.8 0.00017 3.6E-09 58.0 8.3 44 173-216 154-198 (255)
405 KOG1707 Predicted Ras related/ 97.8 5.1E-05 1.1E-09 67.9 5.9 113 90-218 423-541 (625)
406 PRK06995 flhF flagellar biosyn 97.7 0.00037 8E-09 62.4 10.9 24 92-115 256-279 (484)
407 COG1618 Predicted nucleotide k 97.7 0.00069 1.5E-08 51.4 10.4 24 92-115 5-28 (179)
408 smart00010 small_GTPase Small 97.7 0.00015 3.2E-09 52.4 6.3 23 93-115 1-23 (124)
409 KOG0446 Vacuolar sorting prote 97.7 2.9E-05 6.3E-10 72.0 3.0 75 139-216 133-212 (657)
410 KOG0459 Polypeptide release fa 97.7 9.5E-05 2.1E-09 63.6 5.7 119 89-220 76-234 (501)
411 KOG2484 GTPase [General functi 97.6 0.00017 3.7E-09 61.9 7.2 63 171-233 143-207 (435)
412 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.00024 5.2E-09 59.8 8.1 53 172-226 22-74 (287)
413 PF00004 AAA: ATPase family as 97.6 0.001 2.3E-08 48.5 9.7 21 95-115 1-21 (132)
414 KOG0082 G-protein alpha subuni 97.5 0.00061 1.3E-08 58.3 9.0 71 135-218 192-277 (354)
415 COG1116 TauB ABC-type nitrate/ 97.5 6E-05 1.3E-09 61.1 2.7 24 93-116 30-53 (248)
416 KOG4423 GTP-binding protein-li 97.5 2.6E-06 5.6E-11 65.6 -4.9 114 91-217 24-149 (229)
417 KOG1533 Predicted GTPase [Gene 97.5 0.00019 4.2E-09 57.6 5.3 78 138-219 97-179 (290)
418 KOG3887 Predicted small GTPase 97.5 0.00051 1.1E-08 55.4 7.6 117 92-219 27-151 (347)
419 cd02036 MinD Bacterial cell di 97.4 0.0048 1E-07 47.6 12.5 63 139-216 64-127 (179)
420 PF05621 TniB: Bacterial TniB 97.4 0.0017 3.7E-08 54.4 10.4 29 88-116 57-85 (302)
421 PF13555 AAA_29: P-loop contai 97.4 0.00019 4.2E-09 45.7 3.3 21 93-113 24-44 (62)
422 PF09547 Spore_IV_A: Stage IV 97.4 0.0014 3.1E-08 57.2 9.6 141 90-231 15-207 (492)
423 cd01855 YqeH YqeH. YqeH is an 97.4 0.00042 9E-09 54.5 5.7 42 175-218 35-76 (190)
424 cd00071 GMPK Guanosine monopho 97.3 0.0002 4.3E-09 53.5 3.1 21 95-115 2-22 (137)
425 COG1136 SalX ABC-type antimicr 97.3 0.00017 3.6E-09 58.2 2.7 24 93-116 32-55 (226)
426 PF06858 NOG1: Nucleolar GTP-b 97.3 0.00071 1.5E-08 42.1 4.9 40 175-214 14-58 (58)
427 COG3840 ThiQ ABC-type thiamine 97.3 0.00018 4E-09 55.7 2.8 26 91-116 24-49 (231)
428 PF00005 ABC_tran: ABC transpo 97.3 0.00021 4.4E-09 53.0 2.9 24 93-116 12-35 (137)
429 PRK13695 putative NTPase; Prov 97.3 0.0039 8.4E-08 48.3 10.1 22 94-115 2-23 (174)
430 COG1341 Predicted GTPase or GT 97.3 0.0013 2.8E-08 57.0 7.9 25 91-115 72-96 (398)
431 cd03111 CpaE_like This protein 97.3 0.0024 5.2E-08 45.4 8.1 100 95-212 2-106 (106)
432 COG3839 MalK ABC-type sugar tr 97.3 0.00035 7.6E-09 59.7 4.3 23 94-116 31-53 (338)
433 PF13207 AAA_17: AAA domain; P 97.2 0.00025 5.3E-09 51.4 2.9 22 94-115 1-22 (121)
434 PRK12289 GTPase RsgA; Reviewed 97.2 0.0014 3.1E-08 56.6 8.0 54 175-228 90-145 (352)
435 cd01983 Fer4_NifH The Fer4_Nif 97.2 0.0029 6.4E-08 43.2 8.2 69 95-186 2-70 (99)
436 cd00009 AAA The AAA+ (ATPases 97.2 0.0039 8.4E-08 45.7 8.9 24 92-115 19-42 (151)
437 PRK14737 gmk guanylate kinase; 97.2 0.00045 9.8E-09 54.3 3.8 25 92-116 4-28 (186)
438 COG1126 GlnQ ABC-type polar am 97.1 0.00033 7.2E-09 55.7 2.9 25 92-116 28-52 (240)
439 KOG0781 Signal recognition par 97.1 0.0037 8E-08 55.2 8.9 75 137-218 466-545 (587)
440 KOG4181 Uncharacterized conser 97.1 0.0069 1.5E-07 51.5 10.1 26 90-115 186-211 (491)
441 PRK14738 gmk guanylate kinase; 97.1 0.00058 1.3E-08 54.6 3.7 24 92-115 13-36 (206)
442 COG4525 TauB ABC-type taurine 97.1 0.0004 8.8E-09 54.5 2.6 23 93-115 32-54 (259)
443 PF07015 VirC1: VirC1 protein; 97.0 0.0067 1.5E-07 49.0 9.4 22 93-114 2-24 (231)
444 PF02263 GBP: Guanylate-bindin 97.0 0.0026 5.5E-08 52.8 7.2 60 91-150 20-86 (260)
445 cd03238 ABC_UvrA The excision 97.0 0.00064 1.4E-08 53.0 3.4 25 91-115 20-44 (176)
446 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0006 1.3E-08 53.2 3.2 24 92-115 25-48 (177)
447 PF03205 MobB: Molybdopterin g 97.0 0.00055 1.2E-08 51.3 2.9 23 93-115 1-23 (140)
448 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00057 1.2E-08 54.6 2.9 25 92-116 27-51 (211)
449 TIGR00235 udk uridine kinase. 97.0 0.00059 1.3E-08 54.5 2.9 25 91-115 5-29 (207)
450 cd03261 ABC_Org_Solvent_Resist 97.0 0.00059 1.3E-08 55.6 2.9 25 92-116 26-50 (235)
451 TIGR00960 3a0501s02 Type II (G 97.0 0.00072 1.6E-08 54.3 3.4 25 92-116 29-53 (216)
452 cd01130 VirB11-like_ATPase Typ 97.0 0.00069 1.5E-08 53.2 3.2 23 93-115 26-48 (186)
453 cd03264 ABC_drug_resistance_li 96.9 0.00066 1.4E-08 54.3 3.0 22 94-115 27-48 (211)
454 cd02042 ParA ParA and ParB of 96.9 0.015 3.3E-07 40.8 9.7 71 95-186 2-73 (104)
455 smart00275 G_alpha G protein a 96.9 0.0027 5.9E-08 54.8 7.0 69 135-216 181-264 (342)
456 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00065 1.4E-08 48.3 2.6 21 93-113 16-36 (107)
457 cd03265 ABC_DrrA DrrA is the A 96.9 0.00065 1.4E-08 54.7 2.9 24 92-115 26-49 (220)
458 TIGR01166 cbiO cobalt transpor 96.9 0.00066 1.4E-08 53.4 2.9 24 93-116 19-42 (190)
459 PRK10078 ribose 1,5-bisphospho 96.9 0.00068 1.5E-08 53.2 2.9 22 94-115 4-25 (186)
460 COG1120 FepC ABC-type cobalami 96.9 0.00079 1.7E-08 55.4 3.3 24 92-115 28-51 (258)
461 PRK08118 topology modulation p 96.9 0.00075 1.6E-08 52.1 3.1 24 93-116 2-25 (167)
462 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00081 1.8E-08 54.0 3.4 25 92-116 30-54 (218)
463 PRK07261 topology modulation p 96.9 0.00073 1.6E-08 52.4 2.9 22 94-115 2-23 (171)
464 TIGR02673 FtsE cell division A 96.9 0.0007 1.5E-08 54.2 2.9 25 92-116 28-52 (214)
465 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.00074 1.6E-08 50.8 2.8 25 92-116 26-50 (144)
466 PF13671 AAA_33: AAA domain; P 96.9 0.00072 1.6E-08 50.3 2.7 22 94-115 1-22 (143)
467 cd02019 NK Nucleoside/nucleoti 96.9 0.00084 1.8E-08 43.8 2.7 21 95-115 2-22 (69)
468 PRK04195 replication factor C 96.9 0.016 3.5E-07 52.4 11.8 24 92-115 39-62 (482)
469 cd03226 ABC_cobalt_CbiO_domain 96.9 0.00089 1.9E-08 53.3 3.3 24 92-115 26-49 (205)
470 cd03224 ABC_TM1139_LivF_branch 96.9 0.00074 1.6E-08 54.4 2.9 25 92-116 26-50 (222)
471 TIGR03608 L_ocin_972_ABC putat 96.9 0.00078 1.7E-08 53.6 2.9 24 93-116 25-48 (206)
472 TIGR02315 ABC_phnC phosphonate 96.9 0.00076 1.6E-08 55.1 2.9 24 93-116 29-52 (243)
473 cd03293 ABC_NrtD_SsuB_transpor 96.9 0.00077 1.7E-08 54.3 2.9 24 93-116 31-54 (220)
474 cd03292 ABC_FtsE_transporter F 96.9 0.00078 1.7E-08 53.9 2.9 25 92-116 27-51 (214)
475 TIGR02322 phosphon_PhnN phosph 96.9 0.00084 1.8E-08 52.2 3.0 22 94-115 3-24 (179)
476 cd03269 ABC_putative_ATPase Th 96.9 0.00079 1.7E-08 53.8 2.9 24 93-116 27-50 (210)
477 TIGR03263 guanyl_kin guanylate 96.9 0.0011 2.4E-08 51.5 3.7 22 94-115 3-24 (180)
478 PRK09270 nucleoside triphospha 96.9 0.0021 4.5E-08 52.2 5.4 25 91-115 32-56 (229)
479 PRK10751 molybdopterin-guanine 96.9 0.00084 1.8E-08 52.1 2.9 25 91-115 5-29 (173)
480 cd03259 ABC_Carb_Solutes_like 96.9 0.00081 1.8E-08 53.9 2.9 24 92-115 26-49 (213)
481 cd03216 ABC_Carb_Monos_I This 96.9 0.001 2.2E-08 51.1 3.3 26 91-116 25-50 (163)
482 COG0194 Gmk Guanylate kinase [ 96.8 0.0004 8.6E-09 54.0 0.9 25 92-116 4-28 (191)
483 cd03263 ABC_subfamily_A The AB 96.8 0.00085 1.8E-08 54.0 2.9 24 93-116 29-52 (220)
484 cd03260 ABC_PstB_phosphate_tra 96.8 0.001 2.2E-08 53.8 3.4 24 92-115 26-49 (227)
485 cd03258 ABC_MetN_methionine_tr 96.8 0.00086 1.9E-08 54.5 2.9 25 92-116 31-55 (233)
486 TIGR01360 aden_kin_iso1 adenyl 96.8 0.00099 2.1E-08 52.0 3.2 25 91-115 2-26 (188)
487 COG1117 PstB ABC-type phosphat 96.8 0.00097 2.1E-08 53.1 3.0 25 92-116 33-57 (253)
488 cd03262 ABC_HisP_GlnQ_permease 96.8 0.0011 2.3E-08 53.1 3.4 25 92-116 26-50 (213)
489 cd03110 Fer4_NifH_child This p 96.8 0.018 4E-07 44.6 10.3 66 137-217 92-157 (179)
490 PF05496 RuvB_N: Holliday junc 96.8 0.014 3E-07 47.1 9.5 25 91-115 49-73 (233)
491 cd03229 ABC_Class3 This class 96.8 0.00094 2E-08 52.0 2.9 24 93-116 27-50 (178)
492 cd03218 ABC_YhbG The ABC trans 96.8 0.0009 1.9E-08 54.3 2.9 23 93-115 27-49 (232)
493 TIGR02211 LolD_lipo_ex lipopro 96.8 0.0011 2.3E-08 53.4 3.4 25 92-116 31-55 (221)
494 PRK00098 GTPase RsgA; Reviewed 96.8 0.0051 1.1E-07 52.1 7.5 44 174-217 80-125 (298)
495 PRK11248 tauB taurine transpor 96.8 0.00092 2E-08 55.3 2.9 25 92-116 27-51 (255)
496 cd03266 ABC_NatA_sodium_export 96.8 0.00094 2E-08 53.7 2.9 24 93-116 32-55 (218)
497 cd03256 ABC_PhnC_transporter A 96.8 0.00093 2E-08 54.5 2.9 24 93-116 28-51 (241)
498 PRK11629 lolD lipoprotein tran 96.8 0.00094 2E-08 54.3 2.9 24 93-116 36-59 (233)
499 COG0563 Adk Adenylate kinase a 96.8 0.001 2.2E-08 51.9 3.0 23 94-116 2-24 (178)
500 KOG2423 Nucleolar GTPase [Gene 96.8 0.0061 1.3E-07 52.7 7.8 62 169-230 208-271 (572)
No 1
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=195.73 Aligned_cols=159 Identities=45% Similarity=0.698 Sum_probs=144.6
Q ss_pred hHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccc
Q 026538 75 LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~ 154 (237)
..++.++....+.|.+..|.|+++|++|||||||||+|++....+.++..||.|+.++++..+..+.++|.|||+.+...
T Consensus 7 ~~f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~ 86 (200)
T COG0218 7 AKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVP 86 (200)
T ss_pred cEEEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCC
Confidence 34556666777888899999999999999999999999998678999999999999999999888999999999998777
Q ss_pred hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
....+.|..++..|+..+....++++++|+.+++...|.++++++...++|+++|+||+|.++..+..+.+..+++.+.
T Consensus 87 k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~ 165 (200)
T COG0218 87 KEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELK 165 (200)
T ss_pred HHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence 7889999999999999998899999999999999999999999999999999999999999998888877777776554
No 2
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.95 E-value=4e-28 Score=208.33 Aligned_cols=174 Identities=25% Similarity=0.242 Sum_probs=133.4
Q ss_pred CCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHH
Q 026538 33 RRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNAL 112 (237)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L 112 (237)
|..+++... .+|+.+|||+|+++.............+......++..+...+.+ ..+.+++++|.||+|||||+|+|
T Consensus 161 r~~li~~~a-~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il--r~G~kvvIiG~PNvGKSSLLNaL 237 (454)
T COG0486 161 REALLELLA-QVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKIL--REGLKVVIIGRPNVGKSSLLNAL 237 (454)
T ss_pred HHHHHHHHH-HheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hcCceEEEECCCCCcHHHHHHHH
Confidence 445555555 899999999998888777666555555555555666666655444 36679999999999999999999
Q ss_pred hcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccc---hHHHHHHHHHHHHHHhccccccEEEEEEeCCC
Q 026538 113 TRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK---EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (237)
Q Consensus 113 ~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (237)
+++ +.++|++.||||+|+.... .|.++.++||+|++++.+. ..+++.+.. ...+|+|+||+|++.
T Consensus 238 ~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~--------i~~ADlvL~v~D~~~ 308 (454)
T COG0486 238 LGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA--------IEEADLVLFVLDASQ 308 (454)
T ss_pred hcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH--------HHhCCEEEEEEeCCC
Confidence 999 6699999999999986444 4899999999999975322 223333333 334999999999998
Q ss_pred CCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 187 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 187 ~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
+++..+...+. ....+.|+++|+||+|+..+.
T Consensus 309 ~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 309 PLDKEDLALIE-LLPKKKPIIVVLNKADLVSKI 340 (454)
T ss_pred CCchhhHHHHH-hcccCCCEEEEEechhccccc
Confidence 87777777777 445578999999999998643
No 3
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.93 E-value=1.9e-24 Score=169.38 Aligned_cols=155 Identities=41% Similarity=0.654 Sum_probs=123.1
Q ss_pred hhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHH
Q 026538 80 AAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKD 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~ 159 (237)
++-...+.++...++|+++|.+|+|||||+|+|++......+++.+|+|.++.++..+..+.+|||||+...........
T Consensus 6 ~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 85 (179)
T TIGR03598 6 SAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKE 85 (179)
T ss_pred eeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHH
Confidence 33444556667889999999999999999999999743456778888999887766566899999999876544444455
Q ss_pred HHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538 160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY 234 (237)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~ 234 (237)
.|..+...|+.....++++++|+|++.++...+..+++.+...++|+++|+||+|+....+.....+.+++.++.
T Consensus 86 ~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~ 160 (179)
T TIGR03598 86 KWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKK 160 (179)
T ss_pred HHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence 677777777776666899999999988888888888888888889999999999998777776677777776653
No 4
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=1.5e-24 Score=186.08 Aligned_cols=201 Identities=18% Similarity=0.215 Sum_probs=130.0
Q ss_pred cccccccccCCChhhhHHHHHhhcCCCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhh--hhhhhHHHHhhh--c
Q 026538 8 SKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI--FRNKLEFFAAAK--V 83 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~ 83 (237)
-+.++++++|...+.+++..+++.+.+..+....++++ .++|+|+. ...+++.+..++ +...+..+...+ .
T Consensus 106 ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~--~~g~gE~~---~~~~~~~i~~ri~~l~~~L~~~~~~~~~~ 180 (351)
T TIGR03156 106 RARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIG--TRGPGETQ---LETDRRLIRERIAQLKKELEKVEKQRERQ 180 (351)
T ss_pred hccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCC--CCCCChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677779999999999999999998877655554454 36666642 133344455444 222333222222 2
Q ss_pred cCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHH
Q 026538 84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKD 159 (237)
Q Consensus 84 ~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~ 159 (237)
+..+.+.+.++|+++|++|+|||||+|+|++.. ..+.+.+++|.+..... .+..+.+|||||+......+ ..+
T Consensus 181 r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~-lie 257 (351)
T TIGR03156 181 RRRRKRADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHE-LVA 257 (351)
T ss_pred HhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHH-HHH
Confidence 222333567999999999999999999999984 56777788877654221 36789999999984321122 112
Q ss_pred HHHHHHHHHHhccccccEEEEEEeCCCCCChhHH----HHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538 160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~~~~piilv~NK~Dl~~~~~ 220 (237)
.+..... ....+|++++|+|++++...... .+++.+...+.|+++|+||+|+.+..+
T Consensus 258 ~f~~tle----~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~ 318 (351)
T TIGR03156 258 AFRATLE----EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR 318 (351)
T ss_pred HHHHHHH----HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh
Confidence 2332222 22339999999999876544332 333333334789999999999976543
No 5
>COG2262 HflX GTPases [General function prediction only]
Probab=99.91 E-value=5.9e-24 Score=179.85 Aligned_cols=202 Identities=19% Similarity=0.231 Sum_probs=138.4
Q ss_pred ccccccccccCCChhhhHHHHHhhcCCCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhh--hhhhhHHHHhhh--
Q 026538 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI--FRNKLEFFAAAK-- 82 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-- 82 (237)
+-+++++.++|+..++++|..+++.+.|..+....+++. ...|+|. ....+++.+..+| +...++.+...+
T Consensus 108 ~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG--~rGpGE~---~lE~drR~ir~rI~~i~~eLe~v~~~R~~ 182 (411)
T COG2262 108 QRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIG--FRGPGET---QLETDRRRIRRRIAKLKRELENVEKAREP 182 (411)
T ss_pred HHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCCC--CCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677779999999999999999999999994443333 6667765 5666777788777 344444444333
Q ss_pred ccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE----EEcCCeEEEEeCCCCCCcccchHHH
Q 026538 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPGYGFAYAKEEVK 158 (237)
Q Consensus 83 ~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~----~~~~~~~~liDTpG~~~~~~~~~~~ 158 (237)
.++.+.+.+.|.|+++|++|+|||||+|+|++.. ..+.+..+.|-+... ...+..+.+-||-||....... +-
T Consensus 183 ~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~-LV 259 (411)
T COG2262 183 RRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHP-LV 259 (411)
T ss_pred HhhhhcccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCcccCChH-HH
Confidence 4455666789999999999999999999999874 444555554444322 1236789999999986532221 22
Q ss_pred HHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-H---HHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-H---ELISLMERSQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~---~~~~~l~~~~~piilv~NK~Dl~~~~~ 220 (237)
++|...+ .....+|++++|+|++++..... . .++..+....+|+++|+||+|++....
T Consensus 260 ~AFksTL----EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 260 EAFKSTL----EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred HHHHHHH----HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 2232222 22334899999999987632222 2 334444445689999999999886554
No 6
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=1e-23 Score=184.90 Aligned_cols=200 Identities=16% Similarity=0.216 Sum_probs=131.8
Q ss_pred ccccccccccCCChhhhHHHHHhhcCCCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhh--hhhHHHHhhhc-
Q 026538 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAAKV- 83 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~- 83 (237)
+-+.++++++|.+.|.++|..++|.+.|..+..+.+++. ...|+|. ....+++.+..++.. ..+..+...+.
T Consensus 113 ~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g--~~g~ge~---~~e~d~r~i~~ri~~l~~~L~~~~~~r~~ 187 (426)
T PRK11058 113 QRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIG--LRGPGET---QLETDRRLLRNRIVQILSRLERVEKQREQ 187 (426)
T ss_pred HhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCC--CCCCChh---HhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345677779999999999999999999998888876665 4677764 344455555555522 22222222221
Q ss_pred -cCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cC-CeEEEEeCCCCCCcccchHHH
Q 026538 84 -SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVK 158 (237)
Q Consensus 84 -~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~-~~~~liDTpG~~~~~~~~~~~ 158 (237)
+..+...+.|+|+++|++|||||||+|+|++.. ..+.+.+++|.+..... .+ ..+.+|||||+......+ .-
T Consensus 188 ~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~--~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~-lv 264 (426)
T PRK11058 188 GRRARIKADVPTVSLVGYTNAGKSTLFNRITEAR--VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHD-LV 264 (426)
T ss_pred HHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCc--eeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHH-HH
Confidence 112222466899999999999999999999984 33677788887754322 23 378999999984311111 11
Q ss_pred HHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH----HHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
+.+... +.....+|++++|+|++++...... .++..+...++|+++|+||+|+.+.
T Consensus 265 e~f~~t----l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 265 AAFKAT----LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred HHHHHH----HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 222222 2223449999999999876444332 3344444447899999999999753
No 7
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=5.1e-22 Score=157.41 Aligned_cols=161 Identities=43% Similarity=0.669 Sum_probs=123.3
Q ss_pred hhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcc
Q 026538 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~ 152 (237)
+..++..+.-..+..+.+..++|+++|.+|+|||||+|+|++......+++.+|+|+.+.++..+..+.+|||||+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 5 HNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAK 84 (196)
T ss_pred hHHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcC
Confidence 34455555555566666788999999999999999999999874356677888999988877767889999999986543
Q ss_pred cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
......+.+..+...|+.....++++++++|+..+....+..+.+.+...+.|+++|+||+|+....+.+...+.+.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l 164 (196)
T PRK00454 85 VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKAL 164 (196)
T ss_pred CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 33334556667777777776667889999998877777666677777777899999999999987766666665555554
Q ss_pred H
Q 026538 233 F 233 (237)
Q Consensus 233 ~ 233 (237)
.
T Consensus 165 ~ 165 (196)
T PRK00454 165 K 165 (196)
T ss_pred H
Confidence 4
No 8
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=8.5e-23 Score=166.69 Aligned_cols=131 Identities=27% Similarity=0.336 Sum_probs=106.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
-.|+++|+||+|||||+|+|+|. .++++|+.+.||+... +...+..+.++||||+..+ .... ...+.+...
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p--k~~l---~~~m~~~a~ 80 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP--KHAL---GELMNKAAR 80 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc--chHH---HHHHHHHHH
Confidence 36899999999999999999999 8899999999998753 3334778999999999875 2222 234555666
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHH-HHHHHHHHH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIE 229 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~ 229 (237)
.+..++|+|+||+|+.+++...+..+++.++..+.|+++++||+|+..+.. +....+.+.
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~ 141 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLK 141 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHH
Confidence 667779999999999999999999999999987789999999999987776 444444443
No 9
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=4.1e-23 Score=182.85 Aligned_cols=169 Identities=24% Similarity=0.243 Sum_probs=109.3
Q ss_pred eecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhccccee
Q 026538 40 RRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVV 119 (237)
Q Consensus 40 ~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~ 119 (237)
..+.+++.+|||+|+.+.............+......+.......... ...++|+++|++|+|||||+|+|++. ...
T Consensus 165 ~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~--~~~~kV~ivG~~nvGKSSLln~L~~~-~~a 241 (449)
T PRK05291 165 LLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASARQGEIL--REGLKVVIAGRPNVGKSSLLNALLGE-ERA 241 (449)
T ss_pred HHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCEEEEECCCCCCHHHHHHHHhCC-CCc
Confidence 344799999999987654443333222323333333333333322222 24579999999999999999999998 446
Q ss_pred eccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHH
Q 026538 120 RTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196 (237)
Q Consensus 120 ~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~ 196 (237)
.+++.+|+|++... ...+.++.+|||||+.+. .+.++... +.........+|++++|+|++.+.+..+..++
T Consensus 242 ~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~--~~~ie~~g---i~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l 316 (449)
T PRK05291 242 IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET--DDEVEKIG---IERSREAIEEADLVLLVLDASEPLTEEDDEIL 316 (449)
T ss_pred ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC--ccHHHHHH---HHHHHHHHHhCCEEEEEecCCCCCChhHHHHH
Confidence 78889999987643 334778999999998752 12111110 11111122339999999999877655554444
Q ss_pred HHHHhcCCcEEEEEecCCCCCh
Q 026538 197 SLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 197 ~~l~~~~~piilv~NK~Dl~~~ 218 (237)
.. ..+.|+++|+||+|+.+.
T Consensus 317 ~~--~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 317 EE--LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred Hh--cCCCCcEEEEEhhhcccc
Confidence 43 346899999999999754
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=173.30 Aligned_cols=121 Identities=28% Similarity=0.467 Sum_probs=99.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
|.|+++|.||||||||+|+|++. ..+++++.||+|+|..+. ..+..|.++||+|+.... .+.+. ..+..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~-~~~l~---~~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD-EDELQ---ELIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC-chHHH---HHHHHHHH
Confidence 78999999999999999999999 779999999999997543 347889999999997532 12222 22333444
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
....+||+++||+|+..++++.|..+.+.+...++|+++|+||+|....
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~ 127 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA 127 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh
Confidence 4455599999999999999999999999999888999999999998633
No 11
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=2.4e-22 Score=177.18 Aligned_cols=172 Identities=22% Similarity=0.209 Sum_probs=112.7
Q ss_pred CCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHH
Q 026538 33 RRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNAL 112 (237)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L 112 (237)
|.++++... .+++.||||+|+.+. .+.......+.......+.+. ..... ...++|+++|++|||||||+|+|
T Consensus 151 r~~l~~~~a-~iea~iDf~ee~~~~---~~~~~~l~~~~~~l~~ll~~~-~~~~~--~~g~kVvIvG~~nvGKSSLiN~L 223 (442)
T TIGR00450 151 RKSLLQLLA-QVEVNIDYEEDDDEQ---DSLNQLLLSIIAELKDILNSY-KLEKL--DDGFKLAIVGSPNVGKSSLLNAL 223 (442)
T ss_pred HHHHHHHHH-HeeEECCcCCCCccH---HHHHHHHHHHHHHHHHHHHHH-HHHHh--hcCCEEEEECCCCCcHHHHHHHH
Confidence 344444554 799999999987332 222222333333333444444 22112 35679999999999999999999
Q ss_pred hcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCC
Q 026538 113 TRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK 189 (237)
Q Consensus 113 ~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~ 189 (237)
++. ....+++.+|+|++.... ..+.++.+|||||+.+.. +.++...-.....++ ..+|++++|+|++.+.+
T Consensus 224 ~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~~~~~---~~aD~il~V~D~s~~~s 297 (442)
T TIGR00450 224 LKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVERLGIEKSFKAI---KQADLVIYVLDASQPLT 297 (442)
T ss_pred hCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHHHHHHHHHHHH---hhCCEEEEEEECCCCCC
Confidence 997 446788999999986432 346789999999986531 111111101111222 33999999999987765
Q ss_pred hhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 190 PRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 190 ~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
..+. ++..+...++|+++|+||+|+...
T Consensus 298 ~~~~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 298 KDDF-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred hhHH-HHHHHhhCCCCEEEEEECccCCCc
Confidence 5554 566666568999999999998643
No 12
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=8.5e-23 Score=155.01 Aligned_cols=132 Identities=27% Similarity=0.261 Sum_probs=92.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
++|+++|.||||||||+|+|+|.+ ..+++.||+|.+... ...+..+.++||||+.+-.....- +.....|+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e----e~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE----ERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH----HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH----HHHHHHHH
Confidence 479999999999999999999995 778999999998754 334788999999996542222111 12333444
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
. ....|++++|+|+++. +.+..+..++.+.++|+++|+||+|+.......-..+.+.+.++
T Consensus 75 ~-~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg 135 (156)
T PF02421_consen 75 L-SEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG 135 (156)
T ss_dssp H-HTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT
T ss_pred h-hcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC
Confidence 3 2349999999999852 55667888888899999999999998754433333445555443
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=2.5e-21 Score=166.23 Aligned_cols=140 Identities=27% Similarity=0.340 Sum_probs=107.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHH-HH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~~ 166 (237)
..++|+++|.||+|||||+|+|+++ ...++++.+|||+|. .+...+..+.++||+|+..... +.+..+.+ +.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k---i~e~~E~~Sv~ 252 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK---ITESVEKYSVA 252 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccc---cccceEEEeeh
Confidence 4689999999999999999999999 558999999999986 3445588999999999865211 11100000 11
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh--HHHHHHHHHHHHHHHh
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEEVIFY 234 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~~~l~~ 234 (237)
........+|++++|+|+..+++.++..+...+...+.++++|+||||++.. .........++..+..
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~ 322 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPF 322 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcc
Confidence 2223333499999999999999999999999999999999999999999876 4445566666665554
No 14
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.85 E-value=3.8e-20 Score=154.20 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=91.9
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
+|+++|++|||||||+|+|++. ....+++.++||++.. ....+..+.+|||||+.+.. .... ..+...+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~---~~~~~~~~~ 75 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLN---RLMMKEARS 75 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc--chHH---HHHHHHHHH
Confidence 6899999999999999999998 6678899999998753 22235679999999986531 1111 122222333
Q ss_pred ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l 228 (237)
....+|++++|+|++...... ..++..+...+.|+++|+||+|+..+.+.......+
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~ 132 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKY 132 (270)
T ss_pred HHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHH
Confidence 334599999999998754443 556677777789999999999998665544433333
No 15
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.84 E-value=3.9e-20 Score=134.80 Aligned_cols=113 Identities=24% Similarity=0.399 Sum_probs=85.2
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
+|+++|.+|+|||||+|+|++. ....++..+++|+..... ..+..+.++||||+.+........ .....++.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~----~~~~~~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG----KEIRKFLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH----HHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH----HHHHHHHH
Confidence 5899999999999999999997 456788889998887432 246678999999997643332211 12333444
Q ss_pred ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEec
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK 212 (237)
....+|+++||+|+.+.....+..+++.+. .+.|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 445599999999987755556677888886 78999999998
No 16
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.84 E-value=3.3e-19 Score=136.92 Aligned_cols=138 Identities=47% Similarity=0.747 Sum_probs=107.4
Q ss_pred EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcccc
Q 026538 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (237)
|+++|.+|+|||||+|.|++.......+..+++|.....+.....+.+|||||+..........+.+......|+.....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN 81 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence 78999999999999999995434466777778888877776677899999999877544444455566677777777667
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 175 ~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
++++++++|...........+.+++...+.|+++|+||+|+..+.+.......+...+
T Consensus 82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l 139 (170)
T cd01876 82 LKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKEL 139 (170)
T ss_pred hhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHH
Confidence 8999999998876667767778888888899999999999987766655555554443
No 17
>PRK00089 era GTPase Era; Reviewed
Probab=99.83 E-value=4.1e-19 Score=149.59 Aligned_cols=132 Identities=26% Similarity=0.303 Sum_probs=97.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EE-cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
-.|+++|.+|||||||+|+|++. ..+.+++.+.+|++... .. .+..+.++||||+.++. ....+ .+.....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~--~~l~~---~~~~~~~ 79 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK--RALNR---AMNKAAW 79 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch--hHHHH---HHHHHHH
Confidence 47899999999999999999998 66778888888876532 22 34689999999987532 11111 1222222
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC-ChHHHHHHHHHHHH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEE 230 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~-~~~~~~~~~~~l~~ 230 (237)
.....+|++++|+|++..++..+..+++.+...+.|+++|+||+|+. +..+.....+.+.+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~ 141 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSE 141 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHh
Confidence 33345999999999988777777778888877789999999999998 55555555555544
No 18
>PRK04213 GTP-binding protein; Provisional
Probab=99.82 E-value=7.2e-19 Score=140.10 Aligned_cols=126 Identities=32% Similarity=0.536 Sum_probs=88.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCccc-chHHHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYV 169 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~~ 169 (237)
..++|+++|.+|||||||+|+|++.. ..++..+|+|.+......+ .+.+|||||++.... .....+.+......|+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999874 4466778888876655445 699999999754211 1122334445555555
Q ss_pred h-ccccccEEEEEEeCCCCC-----------ChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 170 S-TRVSLKRVCLLIDTKWGV-----------KPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 170 ~-~~~~~d~v~~vvd~~~~~-----------~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
. ....++++++|+|+.... ...+..++..+...++|+++|+||+|+....
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH
Confidence 4 445589999999985321 1223455666666789999999999997544
No 19
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=5.7e-19 Score=151.32 Aligned_cols=122 Identities=22% Similarity=0.221 Sum_probs=90.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...+|+++|.+|||||||+|+|++. ....+++.+++|++... ...+..+.+|||||+.+.... +. ..+.+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~--l~---~~~~r~ 124 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS--LE---KAMVRC 124 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc--HH---HHHHHH
Confidence 3469999999999999999999998 56778888888876532 234678999999998543211 11 122222
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
+......+|++++|+|+..++...+..+++.+...+.|+++|+||+|+...
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK 175 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc
Confidence 223334499999999998877777777888887777899999999998643
No 20
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=1e-18 Score=154.99 Aligned_cols=139 Identities=27% Similarity=0.286 Sum_probs=102.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|+|||||+|+|++. ....+++.+|+|++.. +...+..+.+|||||+..........+.+. ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HHH
Confidence 4689999999999999999999998 4467888999998863 233477899999999865322111111111 111
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
.+.....+|++++|+|+..+.+..+..++..+...+.|+++|+||+|+.+.+...+..+.+...+
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l 313 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRL 313 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhc
Confidence 12223348999999999999999888888888888899999999999986665555555555544
No 21
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=1e-18 Score=132.99 Aligned_cols=120 Identities=25% Similarity=0.357 Sum_probs=87.0
Q ss_pred EEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538 96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (237)
Q Consensus 96 ~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
+++|.+|+|||||+|+|++. .....+..+++|++.... ..+..+.+|||||+.+... .... .+...+....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~---~~~~~~~~~~ 74 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISK---EIREQAELAI 74 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHH---HHHHHHHHHH
Confidence 47899999999999999998 445566777888765433 2367799999999875321 1111 1122222222
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHH
Q 026538 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~ 221 (237)
..+|++++|+|+.++....+..+.+.+...+.|+++|+||+|+......
T Consensus 75 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 75 EEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred HhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH
Confidence 3389999999998777777777788888888999999999999875543
No 22
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=8.7e-19 Score=156.60 Aligned_cols=121 Identities=24% Similarity=0.368 Sum_probs=93.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
+.|+|+++|.+|||||||+|+|++. ....+.+.+|+|++..... .+..+.+|||||+... ...+...+......
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~--~~~~~~~~~~~~~~ 113 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPD--AKGLQASVAEQAEV 113 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCc--chhHHHHHHHHHHH
Confidence 4589999999999999999999998 4467788999998865432 4678999999998631 11222223333333
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|++.+.+..+..+.+.+...++|+++|+||+|+..
T Consensus 114 ~~~~---aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 114 AMRT---ADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred HHHh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 3333 9999999999988887788888888888999999999999864
No 23
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.4e-19 Score=155.72 Aligned_cols=184 Identities=21% Similarity=0.205 Sum_probs=114.2
Q ss_pred HHHhhcC-CCcceEEeecccccccCCCCCCCCCCC--hhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCC
Q 026538 26 VEDNLLG-RRRPIELRRAGYNIELSAPLDNIPFST--SSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSN 102 (237)
Q Consensus 26 ~~~~l~~-~~~~~~~~~~~~~~~l~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~ 102 (237)
+....++ |..+|++.. .+++.+||.++.-.... .+....... +.......+......... ...+.|+++|+||
T Consensus 203 ~~~l~~~~r~~lIe~~a-~l~a~idf~e~~~l~~~~t~~~~~~~~~-l~d~v~s~l~~~~~~e~l--q~gl~iaIvGrPN 278 (531)
T KOG1191|consen 203 ALALCFGWRKILIEALA-GLEARIDFEEERPLEEIETVEIFIESLS-LLDDVLSHLNKADEIERL--QSGLQIAIVGRPN 278 (531)
T ss_pred hHHhhhhHHHHHHHHHh-ccceeechhhcCchhhccchhhhhHHHH-HHHHHHHHHHhhhhHHHh--hcCCeEEEEcCCC
Confidence 3444445 445556666 78888999764311111 111111111 001111122222222212 2458999999999
Q ss_pred CchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEE
Q 026538 103 VGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVC 179 (237)
Q Consensus 103 ~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 179 (237)
+|||||+|+|... +.+++++.+|||+|.. +...|.++.|+||+|+.+. ..+.++. .-+.........+|+++
T Consensus 279 vGKSSLlNaL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~-~~~~iE~---~gI~rA~k~~~~advi~ 353 (531)
T KOG1191|consen 279 VGKSSLLNALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE-SNDGIEA---LGIERARKRIERADVIL 353 (531)
T ss_pred CCHHHHHHHHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc-cCChhHH---HhHHHHHHHHhhcCEEE
Confidence 9999999999999 7799999999999863 4445999999999999871 1221211 11223333334499999
Q ss_pred EEEeCCCCCChhHHHHHHHHHhc------------CCcEEEEEecCCCCCh
Q 026538 180 LLIDTKWGVKPRDHELISLMERS------------QTKYQVVLTKTDTVFP 218 (237)
Q Consensus 180 ~vvd~~~~~~~~~~~~~~~l~~~------------~~piilv~NK~Dl~~~ 218 (237)
+|+|+.......+..+.+.+... ..|+++|.||.|+.++
T Consensus 354 ~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 354 LVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred EEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 99999766666666655555432 3689999999999754
No 24
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.80 E-value=2.6e-18 Score=131.78 Aligned_cols=126 Identities=26% Similarity=0.359 Sum_probs=81.1
Q ss_pred EEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEE---c-CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~---~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+|+++|.+|||||||+|+|++.. ........+++|.+..+.. . +..+.+|||||... + ...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~----------~---~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK----------F---IKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH----------H---HHHH
Confidence 68999999999999999999752 1111122345665543321 2 56899999999631 1 1112
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCC-cEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
......+|++++|+|+..++.......+..+...+. |+++|+||+|+..........+.+.+.+
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~ 133 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELL 133 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHH
Confidence 222234999999999987655555555555554455 9999999999986544333444444443
No 25
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.80 E-value=4.2e-18 Score=130.34 Aligned_cols=133 Identities=27% Similarity=0.278 Sum_probs=92.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..+|+++|.+|+|||||+|+|++. ......+.+.+++.... ...+..+.+|||||+....... ...+... +
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~---~ 76 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL--GERMVKA---A 76 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH--HHHHHHH---H
Confidence 358999999999999999999998 44555665666654322 2235679999999987532211 1111111 1
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC-ChHHHHHHHHHHHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEE 230 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~-~~~~~~~~~~~l~~ 230 (237)
......+|++++|+|+..........+.+.+...+.|+++|+||+|+. .+.+..+..+.+..
T Consensus 77 ~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~ 139 (168)
T cd04163 77 WSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKE 139 (168)
T ss_pred HHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHh
Confidence 222333899999999987766666777777777789999999999998 45555555555544
No 26
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=9.2e-19 Score=154.96 Aligned_cols=120 Identities=25% Similarity=0.347 Sum_probs=93.4
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
+|+++|.+|||||||+|+|++. ..+.+++.+|+|++.... ..+..+.+|||||+... .+.+.+.+......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~--~~~~~~~~~~~~~~~~- 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED--DDGLDKQIREQAEIAI- 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc--chhHHHHHHHHHHHHH-
Confidence 4899999999999999999998 456788999999876433 34778999999998542 2222232333333333
Q ss_pred ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
..+|++++|+|+..+++..+..+.+++...++|+++|+||+|+....
T Consensus 77 --~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 77 --EEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED 123 (429)
T ss_pred --hhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence 34999999999998888888888999988899999999999987543
No 27
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=3.5e-18 Score=141.06 Aligned_cols=149 Identities=25% Similarity=0.299 Sum_probs=100.6
Q ss_pred hhHHHHhhh-ccCCCCC--CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCC
Q 026538 74 KLEFFAAAK-VSSSFPA--PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPG 147 (237)
Q Consensus 74 ~~~~~~~~~-~~~~~~~--~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG 147 (237)
.+.++..++ ..+.+|. ++.|.|++.|+||||||||++++++.. ..+.++|.||+.+...+. +..+.+|||||
T Consensus 147 ~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPG 224 (346)
T COG1084 147 DLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPG 224 (346)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCc
Confidence 344444444 2344443 578999999999999999999999995 678999999999875543 56899999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHhcc-ccccEEEEEEeCCC--CCChh-HHHHHHHHHh-cCCcEEEEEecCCCCChHHHH
Q 026538 148 YGFAYAKEEVKDAWEELVKEYVSTR-VSLKRVCLLIDTKW--GVKPR-DHELISLMER-SQTKYQVVLTKTDTVFPIDVA 222 (237)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~v~~vvd~~~--~~~~~-~~~~~~~l~~-~~~piilv~NK~Dl~~~~~~~ 222 (237)
+-+....+. ..+-.+...++ .-.++|+|++|.+. +.+-+ ...+++.+.. ...|+++|+||+|....+.+.
T Consensus 225 lLDRPl~Er-----N~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~ 299 (346)
T COG1084 225 LLDRPLEER-----NEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLE 299 (346)
T ss_pred ccCCChHHh-----cHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHH
Confidence 876321111 11111111111 11688999999875 33322 2456666654 367999999999998877776
Q ss_pred HHHHHHH
Q 026538 223 RRAMQIE 229 (237)
Q Consensus 223 ~~~~~l~ 229 (237)
+....+.
T Consensus 300 ~~~~~~~ 306 (346)
T COG1084 300 EIEASVL 306 (346)
T ss_pred HHHHHHH
Confidence 6555443
No 28
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=3.3e-18 Score=132.03 Aligned_cols=138 Identities=28% Similarity=0.284 Sum_probs=93.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|.+|+|||||+|+|++. ......+.+++|.+.. +...+..+.+|||||+.+........+.+. ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~--~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS--VLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH--HHHH
Confidence 368999999999999999999987 3345566677765542 233467799999999865321111111111 0111
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh--HHHHHHHHHHHHHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEEVI 232 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~~~l 232 (237)
+.....+|++++|+|+..+.+.....++..+...+.|+++|+||+|+... .......+.+++.+
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL 144 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhc
Confidence 22223489999999998877777777777777678999999999999866 44444455555443
No 29
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=3.3e-18 Score=151.46 Aligned_cols=139 Identities=25% Similarity=0.274 Sum_probs=99.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|+|||||+|+|++. ....+++.+|+|++.. +...+..+.+|||||+..........+.+. ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~--~~~ 247 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS--VLR 247 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH--HHH
Confidence 4579999999999999999999998 4466788899998753 223467899999999865321111111111 011
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC-ChHHHHHHHHHHHHHH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEEVI 232 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~-~~~~~~~~~~~l~~~l 232 (237)
.......+|++++|+|+.++.+..+..++..+...+.|+++|+||+|+. +........+.+...+
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~ 313 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKL 313 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhc
Confidence 1122234999999999999999988888888888889999999999998 4444455555555444
No 30
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.80 E-value=1.8e-18 Score=137.43 Aligned_cols=129 Identities=13% Similarity=0.126 Sum_probs=91.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|.+|+|||||+|+|++..........+++|+.+... ..+..+.++||||+.+..... ......+...+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~--~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP--EQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh--HHHHHHHHHHHH
Confidence 379999999999999999999984322222345677765433 347789999999998753211 111233444444
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhc-----CCcEEEEEecCCCCChHHHHHH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARR 224 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~Dl~~~~~~~~~ 224 (237)
...+.+|++++|+|+.+ ++..+...++.+... ..++++|+|++|.+...++.+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~ 137 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDY 137 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHH
Confidence 44567899999999887 788888888877653 3689999999998865554444
No 31
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=1.7e-18 Score=150.50 Aligned_cols=130 Identities=20% Similarity=0.230 Sum_probs=90.1
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.|+|+|.||||||||+|+|++.. ..+++.|+||+....... +..+.++||||+.+...... .+...++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~------~Lg~~~l 232 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGA------GLGIRFL 232 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchh------hHHHHHH
Confidence 89999999999999999999884 578999999987654332 34699999999875422211 1222333
Q ss_pred hccccccEEEEEEeCCC----CCChhHHHHHHHHHh-----cCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538 170 STRVSLKRVCLLIDTKW----GVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEEV 231 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~----~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~~~~~~~~~~l~~~ 231 (237)
.....++++++|+|++. ........+++.+.. .+.|+++|+||+|+....+..+.++.+.+.
T Consensus 233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~ 303 (390)
T PRK12298 233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA 303 (390)
T ss_pred HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH
Confidence 34455999999999762 111222445555554 258999999999998766665555555443
No 32
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=2.3e-18 Score=153.85 Aligned_cols=136 Identities=21% Similarity=0.204 Sum_probs=95.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+|+|++. ....+++.+|+|++.. +...+..+.+|||||+..........+.+..+..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~- 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT- 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH-
Confidence 4689999999999999999999998 3456788999998753 3334677899999997542111100111111110
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
......+|++++|+|++.+.+..+..++..+...++|+++|+||+|+..........+.+.
T Consensus 288 -~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~ 348 (472)
T PRK03003 288 -HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREID 348 (472)
T ss_pred -HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHH
Confidence 1112339999999999998888888888888878999999999999986443333333333
No 33
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.79 E-value=3.5e-18 Score=136.49 Aligned_cols=125 Identities=19% Similarity=0.211 Sum_probs=79.4
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---E-cCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---K-LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
++.++|+++|++|||||||+|+|++.. ....+.+++|.+.... . ....+.+|||||+.+..... ....+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQ-LVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHH-HHHHHHHHH
Confidence 567899999999999999999999983 2333444444433221 1 23489999999985432221 112222222
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhHH----HHHHHHHhcCCcEEEEEecCCCCChHHH
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~~~~piilv~NK~Dl~~~~~~ 221 (237)
. ....+|++++|+|++.+...... .++..+...++|+++|+||+|+.+....
T Consensus 116 ~----~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~ 171 (204)
T cd01878 116 E----EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL 171 (204)
T ss_pred H----HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH
Confidence 1 12238999999998865443332 2333333346899999999999765543
No 34
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=4.8e-18 Score=150.65 Aligned_cols=119 Identities=26% Similarity=0.411 Sum_probs=91.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
++|+++|.+|||||||+|+|++. ..+.+.+.+|+|++.... ..+..+.+|||||+... .......+......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPD--DDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCc--chhHHHHHHHHHHHHH
Confidence 68999999999999999999998 446778889998876433 23788999999998752 1112222222222222
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
..+|++++|+|+..+++..+..+.+++...+.|+++|+||+|+..
T Consensus 79 ---~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 79 ---EEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred ---HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence 339999999999988888888888888888999999999999754
No 35
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.78 E-value=7e-18 Score=130.28 Aligned_cols=123 Identities=24% Similarity=0.238 Sum_probs=80.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHH-HHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWE-ELVKEY 168 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~-~~~~~~ 168 (237)
|+|+++|.+|+|||||+|+|++.. ..+++.+++|.++.... .+..+.+|||||+.+...... ..+. .... .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~~~-~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER--NTIEMQAIT-A 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCC--chHHHHHHH-H
Confidence 589999999999999999999984 33455667777665433 246899999999854211110 0010 1111 1
Q ss_pred HhccccccEEEEEEeCCCCCC---hhHHHHHHHHHhc--CCcEEEEEecCCCCChHHHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVK---PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVA 222 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~---~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~~~ 222 (237)
.. ...|++++|+|++.... .....++..+... +.|+++|+||+|+....+..
T Consensus 76 ~~--~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~ 132 (168)
T cd01897 76 LA--HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS 132 (168)
T ss_pred HH--hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHH
Confidence 11 11588999999876432 2224566666554 79999999999998655543
No 36
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.78 E-value=5.7e-18 Score=134.10 Aligned_cols=126 Identities=22% Similarity=0.325 Sum_probs=85.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcccc-----eeeccCCCCceEEEEEE---E--------------cCCeEEEEeCCCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWG-----VVRTSDKPGLTQTINFF---K--------------LGTKLCLVDLPGYGF 150 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~-----~~~~~~~~g~t~~~~~~---~--------------~~~~~~liDTpG~~~ 150 (237)
++|+++|++|+|||||+++|++... .......+|+|.+..+. . .+..+.+|||||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 4799999999999999999997311 11223345666654321 1 15679999999963
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
.+...++.....+|++++|+|+..+......+.+......+.|+++|+||+|+....+.....+.+++
T Consensus 80 ------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 80 ------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred ------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 23334444444489999999998876665555455555567899999999999866555444555544
Q ss_pred H
Q 026538 231 V 231 (237)
Q Consensus 231 ~ 231 (237)
.
T Consensus 148 ~ 148 (192)
T cd01889 148 K 148 (192)
T ss_pred H
Confidence 3
No 37
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.78 E-value=1.3e-18 Score=134.62 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=79.7
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCC-eEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
+|+++|.+|||||||+|+|.+.. ..++..+++|.+... ...+. .+.+|||||+.+..... ..+...++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~ 73 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL 73 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence 68999999999999999999873 345566666655422 12244 89999999985421111 01122222
Q ss_pred hccccccEEEEEEeCCCC-CChh-HHHHHHHHHh-----cCCcEEEEEecCCCCChHHHHHHHH
Q 026538 170 STRVSLKRVCLLIDTKWG-VKPR-DHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAM 226 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~-~~~~-~~~~~~~l~~-----~~~piilv~NK~Dl~~~~~~~~~~~ 226 (237)
.....+|++++|+|++.. -... ...+.+.+.. .+.|+++|+||+|+.+.....+..+
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~ 137 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLK 137 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHH
Confidence 223348999999998764 1211 2234444432 2689999999999977655544433
No 38
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.77 E-value=1.1e-17 Score=156.08 Aligned_cols=123 Identities=24% Similarity=0.382 Sum_probs=95.2
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
...++|+++|.+|||||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+... ...+...+.....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~ 349 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEAD--VEGIDSAIASQAQ 349 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCC--CccHHHHHHHHHH
Confidence 34579999999999999999999998 5577889999999875443 3678999999998642 1122222222222
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
.++. .+|++++|+|+..++...+..+.+.+...++|+++|+||+|+...
T Consensus 350 ~~~~---~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 350 IAVS---LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHHH---hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 3333 399999999999888888888888888889999999999998643
No 39
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.77 E-value=1.2e-17 Score=127.05 Aligned_cols=119 Identities=26% Similarity=0.309 Sum_probs=83.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|++|+|||||+|++++. .....++.+++|.+.... ..+..+.+|||||+.+.... ..... .....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~---~~~~~ 75 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEKIG---IERAR 75 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch--HHHHH---HHHHH
Confidence 58999999999999999999998 455667788888765422 23568999999998653211 11110 11111
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
.....+|++++|+|+.......+...+.. ..+.|+++|+||+|+.+..
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcc
Confidence 12223899999999987666666555444 4579999999999997544
No 40
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.77 E-value=1.6e-17 Score=128.12 Aligned_cols=110 Identities=23% Similarity=0.361 Sum_probs=79.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE------cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
|.|+++|.+|+|||||+|+|++.. ......+++|.+..... .+..+.+|||||... +..+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA----------FTNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc--cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH----------HHHHHH
Confidence 579999999999999999999873 22334455666553221 256799999999642 111222
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.++ ..+|++++|+|++.+........+..+...++|+++|+||+|+..
T Consensus 69 ~~~---~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 69 RGA---SLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred HHH---hhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccc
Confidence 222 238999999999877666666667777778899999999999874
No 41
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.77 E-value=1.7e-17 Score=154.91 Aligned_cols=137 Identities=21% Similarity=0.222 Sum_probs=97.6
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
...++|+++|.+|||||||+|+|++. ....+++.+|+|++.. +...+..+.+|||||+........-.+.+.. .+
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~-~r 525 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSS-LR 525 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHH-HH
Confidence 35689999999999999999999998 4456788899998763 3335778999999998642111110111111 11
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
.......+|++++|+|++.+.+..+..++..+...++|+++|+||+|+.+..........+.
T Consensus 526 -~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~ 587 (712)
T PRK09518 526 -TQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWK 587 (712)
T ss_pred -HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHH
Confidence 11223349999999999999888888888888778899999999999986544333333333
No 42
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=9.9e-18 Score=131.52 Aligned_cols=127 Identities=21% Similarity=0.287 Sum_probs=86.8
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeec--------------cCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--------------SDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEE 156 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~--------------~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~ 156 (237)
+|+++|.+|+|||||+|+|++....... ....++|.+.. ....+..+.+|||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 4899999999999999999987421111 01123343332 222356799999999743
Q ss_pred HHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
+......++. .+|++++|+|+.++.......++..+...+.|+++|+||+|+..+.+.....+.+++.++
T Consensus 75 ----~~~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (189)
T cd00881 75 ----FSSEVIRGLS---VSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLG 144 (189)
T ss_pred ----HHHHHHHHHH---hcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHc
Confidence 1112222222 399999999998877777777777777778999999999999876655555555555543
No 43
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=1.3e-17 Score=145.76 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=83.5
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.|+|+|.||||||||+|+|++.. ..+++.|+||....+... +..+.++||||+.+.... +..+...|+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~------~~gLg~~fL 231 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE------GVGLGHQFL 231 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc------cchHHHHHH
Confidence 99999999999999999999884 456788999988764432 578999999998653221 123344455
Q ss_pred hccccccEEEEEEeCCCC----CChhHHHHHHHHHh-----cCCcEEEEEecCCCCC
Q 026538 170 STRVSLKRVCLLIDTKWG----VKPRDHELISLMER-----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~----~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~ 217 (237)
.....++++++|+|++.. .......+.+++.. .++|+++|+||+|+..
T Consensus 232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE 288 (424)
T ss_pred HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence 555569999999998642 11122344455543 3689999999999853
No 44
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.76 E-value=2e-17 Score=130.56 Aligned_cols=127 Identities=25% Similarity=0.406 Sum_probs=91.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceee----------------ccCCCCceE---EEEEE--EcCCeEEEEeCCCCCC
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----------------TSDKPGLTQ---TINFF--KLGTKLCLVDLPGYGF 150 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~----------------~~~~~g~t~---~~~~~--~~~~~~~liDTpG~~~ 150 (237)
.++|+++|+.++|||||+++|+....... .....+.|. ...+. ..+..++++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 46899999999999999999996531100 001122332 23344 4578899999999732
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
+..........+|++++|+|+..++.....+.+..+...++|+++|+||+|+. ..+..+..+++..
T Consensus 83 -------------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~ 148 (188)
T PF00009_consen 83 -------------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKE 148 (188)
T ss_dssp -------------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHH
T ss_pred -------------eeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHHH
Confidence 22233333445999999999999999999999999999999999999999998 5556666666664
Q ss_pred HH
Q 026538 231 VI 232 (237)
Q Consensus 231 ~l 232 (237)
.+
T Consensus 149 ~l 150 (188)
T PF00009_consen 149 KL 150 (188)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 45
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=2.4e-17 Score=130.79 Aligned_cols=128 Identities=19% Similarity=0.304 Sum_probs=91.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcccc---------e-----eeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccch
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWG---------V-----VRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKE 155 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~---------~-----~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~ 155 (237)
.+|+++|+.++|||||+++|+.... . ......+|+|.+.... ..+..+.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA------ 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH------
Confidence 5899999999999999999986410 0 0011145666665322 236679999999973
Q ss_pred HHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHH-HHHHHHHHHH
Q 026538 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEEVIF 233 (237)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~-~~~~l~~~l~ 233 (237)
.+..........+|++++|+|+..++...+...+..+...++| +++|+||+|+....+..+ ..+++.+.+.
T Consensus 77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~ 149 (195)
T cd01884 77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLS 149 (195)
T ss_pred -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 2333334444559999999999988888888899998888887 789999999975444333 4455666554
No 46
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.75 E-value=1.8e-17 Score=141.24 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=87.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cC-CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...|+++|.+|||||||+|+|++.. ..+++.++||....... .+ ..+.+|||||+.+..... ..+...
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~ 228 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHR 228 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHH
Confidence 3689999999999999999999874 45778888887654322 23 689999999986532211 112233
Q ss_pred HHhccccccEEEEEEeCCCC---CC-hhHHHHHHHHHh-----cCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 168 YVSTRVSLKRVCLLIDTKWG---VK-PRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~---~~-~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
|++....++++++|+|++.. -. .....+.+++.. .+.|+++|+||+|+.......+..+.+.+
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~ 300 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK 300 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH
Confidence 33334449999999998743 11 111233344432 36899999999999876555555444443
No 47
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.75 E-value=1.7e-17 Score=126.56 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=83.0
Q ss_pred EecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (237)
Q Consensus 97 lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++|.+|+|||||+|++++.. ...+..+++|.+.. +...+..+.+|||||+.+...... ...+...++.. .
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~ 73 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-E 73 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-C
Confidence 57999999999999999873 45566777777653 222356799999999764221110 11233444443 4
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
.+|++++|+|+... .....+...+...++|+++|+||+|+.+........+.+.
T Consensus 74 ~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~ 127 (158)
T cd01879 74 KPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLS 127 (158)
T ss_pred CCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHH
Confidence 59999999998753 2334455566667899999999999976543333333333
No 48
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=2.7e-17 Score=140.35 Aligned_cols=121 Identities=19% Similarity=0.221 Sum_probs=85.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...|+|+|.||||||||+|+|++.. ..+++.++||....... .+..+.+|||||+.+..... ..+...
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~ 229 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHR 229 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHH
Confidence 3689999999999999999999873 55788899998765432 34679999999986532221 122234
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-----cCCcEEEEEecCCCCChHH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~piilv~NK~Dl~~~~~ 220 (237)
|++..+.++++++|+|++..-...+ ..+.+.+.. .++|+++|+||+|+.+..+
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~ 288 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE 288 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchh
Confidence 4444455999999999875322222 344455543 2689999999999976544
No 49
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.74 E-value=1.3e-16 Score=133.10 Aligned_cols=138 Identities=23% Similarity=0.388 Sum_probs=91.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccC--------CCCce-EEE---EEEEcC--CeEEEEeCCCCCCcccchHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLT-QTI---NFFKLG--TKLCLVDLPGYGFAYAKEEV 157 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~--------~~g~t-~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~ 157 (237)
.++|+++|.+|+|||||+|+|++.. ...... ...++ ... .....+ ..+.+|||||+++......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~-~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~- 81 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTK-LIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD- 81 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCC-CccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh-
Confidence 4689999999999999999999883 332221 12222 111 111123 4699999999987533221
Q ss_pred HHHHHHHH-------HHHHh-----------ccccccEEEEEEeCC-CCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 158 KDAWEELV-------KEYVS-----------TRVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 158 ~~~~~~~~-------~~~~~-----------~~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
.|..+. ..|+. ....+|+++|++++. +++...+.++++.+.. ++|+++|+||+|++..
T Consensus 82 --~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 82 --CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred --hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 122111 11111 111378899999876 4788888899999886 7999999999999988
Q ss_pred HHHHHHHHHHHHHHHh
Q 026538 219 IDVARRAMQIEEVIFY 234 (237)
Q Consensus 219 ~~~~~~~~~l~~~l~~ 234 (237)
.+.....+.+.+.+..
T Consensus 159 ~e~~~~k~~i~~~l~~ 174 (276)
T cd01850 159 EELKEFKQRIMEDIEE 174 (276)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777766553
No 50
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.74 E-value=1.4e-16 Score=130.62 Aligned_cols=128 Identities=23% Similarity=0.203 Sum_probs=88.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
....+|+++|.+|+|||||+|+|++. ....++...++|.....+. .+..+.+|||||+.+........+.....+.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 35579999999999999999999998 4456667767777665433 3678999999999875322222222233344
Q ss_pred HHHhccccccEEEEEEeCC-CCCChhHHHHHHHHHhc-----CCcEEEEEecCCCCChH
Q 026538 167 EYVSTRVSLKRVCLLIDTK-WGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~-----~~piilv~NK~Dl~~~~ 219 (237)
.|+... ..++++||.... ..+...+..+++.+... ..++++|+||+|..++.
T Consensus 108 ~~l~~~-~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 108 RYLKKK-TPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHhcc-CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 455432 378888887544 35566777777777642 35799999999997544
No 51
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.74 E-value=4.9e-17 Score=130.45 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=75.8
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeecc------------------------------CCCCceEEEEE---EEcCCeE
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS------------------------------DKPGLTQTINF---FKLGTKL 140 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~------------------------------~~~g~t~~~~~---~~~~~~~ 140 (237)
+|+++|++|+|||||+++|+...+. +.+ ..+|+|.+... ...+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKS-IFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence 5899999999999999999865321 110 12566766532 2347789
Q ss_pred EEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCC-cEEEEEecCCCCC
Q 026538 141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVF 217 (237)
Q Consensus 141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-piilv~NK~Dl~~ 217 (237)
.+|||||+.+ +..........+|++++|+|+..++..........+...+. ++++|+||+|+..
T Consensus 80 ~liDTpG~~~-------------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-------------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-------------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 9999999632 11111222334999999999988876666666666666564 4788999999874
No 52
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2.7e-17 Score=132.76 Aligned_cols=132 Identities=41% Similarity=0.607 Sum_probs=114.5
Q ss_pred CCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccC-CCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (237)
Q Consensus 85 ~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (237)
...|+.+.|.++++|.+|+|||||||.++........+. .+|-|+.++.+..+..+.++|.||++.+.-..+....|..
T Consensus 129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhH
Confidence 345567789999999999999999999998754443333 8899999999999999999999997765445555677889
Q ss_pred HHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+...|+..+...-.+++++|++.+++..|...++++.+.++|+.+|+||||..
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ 261 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh
Confidence 99999999988889999999999999999999999999999999999999975
No 53
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.73 E-value=8e-17 Score=125.68 Aligned_cols=111 Identities=21% Similarity=0.229 Sum_probs=73.6
Q ss_pred EEEEecCCCCchhhHHHHHhccccee-------ec------cCCCCceEEEE---EE-----EcCCeEEEEeCCCCCCcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVV-------RT------SDKPGLTQTIN---FF-----KLGTKLCLVDLPGYGFAY 152 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~-------~~------~~~~g~t~~~~---~~-----~~~~~~~liDTpG~~~~~ 152 (237)
+|+++|.+|+|||||+++|++..... .. ....|+|.... .. ..+..+.+|||||+.+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 79999999999999999999742100 00 11223443321 11 1245688999999753
Q ss_pred cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
+......++.. +|++++|+|++.+....+...+..+...++|+++|+||+|+..
T Consensus 80 --------~~~~~~~~~~~---ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 80 --------FSYEVSRSLAA---CEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS 133 (179)
T ss_pred --------hHHHHHHHHHh---cCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc
Confidence 12223333333 9999999999877665555555555556899999999999864
No 54
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.73 E-value=1.2e-16 Score=126.76 Aligned_cols=111 Identities=26% Similarity=0.296 Sum_probs=77.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeecc---------------CCCCceEEE---EEEEcCCeEEEEeCCCCCCcccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS---------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~---------------~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~ 154 (237)
.+|+++|.+|+|||||+++|+.... .... ...|+|... .+...+..+.+|||||+.+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSG-TFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcC-CCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH----
Confidence 5899999999999999999996311 1111 113344332 2334467899999999643
Q ss_pred hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
+......++.. +|++++|+|+..+.......++..+...++|+++|+||+|+..
T Consensus 78 ------~~~~~~~~~~~---~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 78 ------FGGEVERVLSM---VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred ------HHHHHHHHHHh---cCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 22233334433 8999999999876555555666666667899999999999964
No 55
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=7.2e-17 Score=150.64 Aligned_cols=133 Identities=19% Similarity=0.174 Sum_probs=92.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCccc--c-hHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYA--K-EEVKDAWEELVK 166 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~--~-~~~~~~~~~~~~ 166 (237)
++|+++|.+|||||||+|+|++.. ..+++.+|+|.+... ...+..+.++||||+.+-.. . .... +....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~ 78 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIAC 78 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHH---HHHHH
Confidence 589999999999999999999984 467888999987643 33467899999999754211 0 1111 11223
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
.|+. ...+|++++|+|+++. +....+..++.+.++|+++|+||+|+.+........+.+++.++
T Consensus 79 ~~l~-~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG 142 (772)
T PRK09554 79 HYIL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG 142 (772)
T ss_pred HHHh-ccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC
Confidence 3333 2348999999998764 33445666777789999999999998755444444555555443
No 56
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=9.1e-17 Score=142.38 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=82.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
...|+|+|.||||||||+|+|++.. ..+++.|+||....... .+..+.++||||+.+..... ..+...+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g------~gLg~~f 230 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG------KGLGLDF 230 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchh------hHHHHHH
Confidence 4689999999999999999999884 45688899998764432 35689999999986532211 1222334
Q ss_pred HhccccccEEEEEEeCCCCC----ChhH-HHHHHHH--------------HhcCCcEEEEEecCCCCChHHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGV----KPRD-HELISLM--------------ERSQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~----~~~~-~~~~~~l--------------~~~~~piilv~NK~Dl~~~~~~ 221 (237)
+.....++++++|+|++... ...+ ..+.+.+ ...+.|+++|+||+|+....+.
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el 302 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL 302 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH
Confidence 44445599999999986411 0111 1122222 1236899999999999755443
No 57
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.72 E-value=4.5e-16 Score=125.64 Aligned_cols=126 Identities=18% Similarity=0.255 Sum_probs=84.6
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccC---------------CCCceEEE---EEEEc----------CCeEEEEeC
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQTI---NFFKL----------GTKLCLVDL 145 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~---------------~~g~t~~~---~~~~~----------~~~~~liDT 145 (237)
+|+++|+.++|||||+++|+...+. .... ..|.|... ..... +..+.+|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGI-ISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC-CccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 7999999999999999999865321 1111 11222211 11111 567899999
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC------ChH
Q 026538 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------FPI 219 (237)
Q Consensus 146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~------~~~ 219 (237)
||+.+ +......++. .+|++++|+|+..+.......+++.+...++|+++|+||+|+. +++
T Consensus 81 PG~~~----------f~~~~~~~l~---~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~ 147 (222)
T cd01885 81 PGHVD----------FSSEVTAALR---LCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPE 147 (222)
T ss_pred CCccc----------cHHHHHHHHH---hcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHH
Confidence 99864 1112222222 2999999999999888888888888777789999999999985 555
Q ss_pred HHHHHHHHHHHHHH
Q 026538 220 DVARRAMQIEEVIF 233 (237)
Q Consensus 220 ~~~~~~~~l~~~l~ 233 (237)
+....+..+-+.++
T Consensus 148 ~~~~~~~~ii~~~n 161 (222)
T cd01885 148 EAYQRLARIIEQVN 161 (222)
T ss_pred HHHHHHHHHHHHHh
Confidence 55554444444443
No 58
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.71 E-value=2.5e-16 Score=128.65 Aligned_cols=127 Identities=23% Similarity=0.275 Sum_probs=88.1
Q ss_pred EEEEecCCCCchhhHHHHHhcccceee----cc------------CCCCceEEE---EEEEcCCeEEEEeCCCCCCcccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVR----TS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~----~~------------~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~ 154 (237)
+|+++|++|+|||||+++|+...+... +. ...+.|... .+...+..+.+|||||+.+-
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 589999999999999999986522100 00 011222222 23345778999999998541
Q ss_pred hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY 234 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~ 234 (237)
......++.. +|++++|+|+..+.......+++.+...++|+++|+||+|+... +..+.++.+++.++.
T Consensus 78 -------~~~~~~~l~~---aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a-~~~~~~~~i~~~~~~ 146 (237)
T cd04168 78 -------IAEVERSLSV---LDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGA-DLEKVYQEIKEKLSS 146 (237)
T ss_pred -------HHHHHHHHHH---hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCC-CHHHHHHHHHHHHCC
Confidence 1112223322 89999999999888877778888888889999999999998754 345677777776653
No 59
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.71 E-value=2e-16 Score=123.03 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=72.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..++|+++|++|||||||+++|++. ......+..|..... +...+..+.+|||||... +..+...++.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~-~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~ 80 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKT-LEYEGYKLNIWDVGGQKT----------LRPYWRNYFE 80 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEE-EEECCEEEEEEECCCCHH----------HHHHHHHHhC
Confidence 4579999999999999999999987 333333333322211 122367789999999532 1223334443
Q ss_pred ccccccEEEEEEeCCCCCC--hhHHHHHHHHH---hcCCcEEEEEecCCCCCh
Q 026538 171 TRVSLKRVCLLIDTKWGVK--PRDHELISLME---RSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l~---~~~~piilv~NK~Dl~~~ 218 (237)
. +|++++|+|+...-+ .....+...+. ..+.|+++|+||+|+...
T Consensus 81 ~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 81 S---TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred C---CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 3 899999999876421 11112222222 247899999999998753
No 60
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=3.9e-16 Score=137.20 Aligned_cols=130 Identities=20% Similarity=0.287 Sum_probs=92.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccce--------------eeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~--------------~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~ 153 (237)
...+|+++|++++|||||+|+|++.... ......+|+|.+.... ..+..+.++||||+.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence 4469999999999999999999975210 0111236777775322 235678999999963
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHH-HHHHHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEEV 231 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~-~~~~l~~~ 231 (237)
.++.........+|++++|+|+..++..++.+.+..+...++| +++|+||+|+.+.++..+ ..+++.+.
T Consensus 87 ---------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred ---------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 1222333333449999999999999888888999988888999 778999999987555433 33455555
Q ss_pred HH
Q 026538 232 IF 233 (237)
Q Consensus 232 l~ 233 (237)
+.
T Consensus 158 l~ 159 (409)
T CHL00071 158 LS 159 (409)
T ss_pred HH
Confidence 54
No 61
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.71 E-value=2.9e-16 Score=130.48 Aligned_cols=126 Identities=19% Similarity=0.206 Sum_probs=87.5
Q ss_pred EEEEecCCCCchhhHHHHHhcccce----eecc------------CCCCceEEE---EEEEcCCeEEEEeCCCCCCcccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGV----VRTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~----~~~~------------~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~ 154 (237)
+|+++|++|+|||||+++|+...+. ..+. ..+|+|.+. .+.+.+..+.+|||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 5899999999999999999743210 0111 234555553 3344578899999999743
Q ss_pred hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
.. .....++ ..+|++++|+|+..++...+..+++.+...++|+++++||+|+... +.....+.+++.++
T Consensus 77 --f~----~~~~~~l---~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a-~~~~~~~~l~~~l~ 145 (270)
T cd01886 77 --FT----IEVERSL---RVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA-DFFRVVEQIREKLG 145 (270)
T ss_pred --HH----HHHHHHH---HHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHhC
Confidence 11 1112222 2389999999999988888888888888889999999999998743 23345555655554
No 62
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.70 E-value=2.7e-16 Score=120.43 Aligned_cols=110 Identities=18% Similarity=0.281 Sum_probs=69.4
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
+|+++|.+|||||||+|++.+.. .....+..+.+...........+.+|||||... ....| ..++..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~------~~~~~----~~~~~~-- 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE-LVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEK------MRTVW----KCYLEN-- 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-cccccCccCcceEEEEeCCceEEEEEECCCCHh------HHHHH----HHHhcc--
Confidence 48999999999999999999884 222223233222222222346799999999632 22222 233333
Q ss_pred cccEEEEEEeCCCCCC--hhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 174 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~~--~~~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
+|++++|+|+++..+ .....+...+.. .+.|+++|+||+|+..
T Consensus 68 -~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 68 -TDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred -CCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 899999999876431 222223333322 4789999999999864
No 63
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.70 E-value=6.7e-16 Score=140.78 Aligned_cols=126 Identities=25% Similarity=0.377 Sum_probs=91.6
Q ss_pred EEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
+|+++|++|+|||||+|+|++.. +.......+|.|.++.+.. .+..+.+|||||+. .+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------------~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------------KFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------------HHHHHHH
Confidence 68999999999999999999752 1011233467787765433 25678999999963 2333333
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
.....+|++++|+|+..++..+..+.+..+...++| +++|+||+|+.+.+......+++++.+
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l 132 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQIL 132 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 334449999999999988878888888778778898 999999999987765544444554443
No 64
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.69 E-value=3.2e-16 Score=124.67 Aligned_cols=116 Identities=22% Similarity=0.202 Sum_probs=76.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeecc---CCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~---~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
++|+++|.+|+|||||+|+|++........ ....+|.....+.. ...+.+|||||+.+.... .+ .+...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~--~~----~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP--PD----DYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCC--HH----HHHHH
Confidence 589999999999999999999863111111 11123333333322 346899999998763221 11 11111
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
. ....+|+++++.+ .+++..+..+++.+...+.|+++|+||+|+..+
T Consensus 76 ~--~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 76 M--KFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred h--CccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhh
Confidence 1 1233788888754 357788888999998889999999999999643
No 65
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.69 E-value=7.2e-17 Score=125.27 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=75.4
Q ss_pred EecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEc-CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (237)
Q Consensus 97 lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
++|++|||||||+|+|++.. . .++..+++|.+... ... +..+.+|||||+.+..... ..+...+....
T Consensus 1 iiG~~~~GKStll~~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------~~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK-P-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG------RGLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC-c-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC------CCccHHHHHHH
Confidence 58999999999999999983 2 45667777766532 223 7889999999985421111 01111122222
Q ss_pred ccccEEEEEEeCCCCC-----Ch-hH-HHHHHHHH----------hcCCcEEEEEecCCCCChHHHHH
Q 026538 173 VSLKRVCLLIDTKWGV-----KP-RD-HELISLME----------RSQTKYQVVLTKTDTVFPIDVAR 223 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~-----~~-~~-~~~~~~l~----------~~~~piilv~NK~Dl~~~~~~~~ 223 (237)
..+|++++|+|+.... .. .. ..+...+. ..+.|+++|+||+|+........
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 140 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEE 140 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHH
Confidence 3389999999987652 11 11 12222222 13689999999999986655443
No 66
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.69 E-value=8.4e-16 Score=116.28 Aligned_cols=121 Identities=26% Similarity=0.320 Sum_probs=83.4
Q ss_pred EecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (237)
Q Consensus 97 lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
++|++|+|||||+|+|++. .....+..+++|........ +..+.+|||||+.+....... +......++..
T Consensus 1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~~~~- 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRVLER- 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHHHHh-
Confidence 5799999999999999987 33445566666655432221 568999999998764222210 11122222222
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHH
Q 026538 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR 224 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~ 224 (237)
+|++++++|+..........+.......+.|+++|+||+|+..+.+....
T Consensus 76 --~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 125 (163)
T cd00880 76 --ADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEEL 125 (163)
T ss_pred --CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHH
Confidence 89999999998776665555566666678999999999999877655443
No 67
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.69 E-value=5.2e-16 Score=118.92 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=71.4
Q ss_pred EEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
+|+++|.+|||||||+++|.+.. ......+..|.+... +...+..+.+|||||... +..+...|+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~- 68 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQGK----------YRGLWEHYYKN- 68 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCHh----------hHHHHHHHHcc-
Confidence 48999999999999999999863 122333444433322 233467799999999642 22233344433
Q ss_pred ccccEEEEEEeCCCCCChhH-HHHHHHH-H-----hcCCcEEEEEecCCCCCh
Q 026538 173 VSLKRVCLLIDTKWGVKPRD-HELISLM-E-----RSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~-----~~~~piilv~NK~Dl~~~ 218 (237)
+|++++|+|++...+... ..++..+ . ..++|+++|+||+|+...
T Consensus 69 --~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 69 --IQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred --CCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 999999999886432211 1222222 1 236899999999998753
No 68
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.69 E-value=7e-16 Score=123.27 Aligned_cols=125 Identities=20% Similarity=0.291 Sum_probs=76.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-----cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
|+|+++|++|||||||++.|..... ....+.++....... .+..+.+|||||+.. .. .....
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~---~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~------~~----~~~~~ 67 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY---RSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPK------LR----DKLLE 67 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC---CCccCcEeecceEEEeecCCCCceEEEEECCCCHH------HH----HHHHH
Confidence 5799999999999999999998731 111222222222211 256799999999743 11 22223
Q ss_pred HHhccccc-cEEEEEEeCCCCCChhH--HHH-HHHHH-----hcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 168 YVSTRVSL-KRVCLLIDTKWGVKPRD--HEL-ISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 168 ~~~~~~~~-d~v~~vvd~~~~~~~~~--~~~-~~~l~-----~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
++.. + ++++||+|+........ ..+ ...+. ..++|+++|+||+|+..........+.+++.+.
T Consensus 68 ~~~~---~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~ 139 (203)
T cd04105 68 TLKN---SAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELN 139 (203)
T ss_pred HHhc---cCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHH
Confidence 3333 5 99999999876421111 112 22221 137999999999999765544455555555443
No 69
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=1.1e-15 Score=126.84 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=83.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccccee----ec----------cCC------CCce---EEEEEEEcCCeEEEEeCCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVV----RT----------SDK------PGLT---QTINFFKLGTKLCLVDLPGYG 149 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~----~~----------~~~------~g~t---~~~~~~~~~~~~~liDTpG~~ 149 (237)
.+|+++|++|+|||||+++|+...+.. .+ .+. .+.+ ....+.+.+..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 589999999999999999998542110 00 010 1111 112344457889999999974
Q ss_pred CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
+ . ......++. .+|++++|+|+..++......+++.+...++|+++++||+|+.... ..+.+++++
T Consensus 83 d------f----~~~~~~~l~---~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~l~ 148 (267)
T cd04169 83 D------F----SEDTYRTLT---AVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD-PLELLDEIE 148 (267)
T ss_pred H------H----HHHHHHHHH---HCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC-HHHHHHHHH
Confidence 3 1 111112222 2899999999988877766777777777789999999999986443 233455666
Q ss_pred HHHH
Q 026538 230 EVIF 233 (237)
Q Consensus 230 ~~l~ 233 (237)
+.++
T Consensus 149 ~~l~ 152 (267)
T cd04169 149 EELG 152 (267)
T ss_pred HHHC
Confidence 6554
No 70
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=4.9e-16 Score=122.23 Aligned_cols=110 Identities=21% Similarity=0.287 Sum_probs=70.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
.++|+++|.+|||||||+|++.+. ....+.+..+.+.. .....+..+.+|||||... . ......|+..
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~~~------~----~~~~~~~~~~ 84 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKND-RLAQHQPTQHPTSE-ELAIGNIKFTTFDLGGHQQ------A----RRLWKDYFPE 84 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcC-CCcccCCccccceE-EEEECCEEEEEEECCCCHH------H----HHHHHHHhCC
Confidence 479999999999999999999987 33333222222221 1222467899999999642 1 2223344443
Q ss_pred cccccEEEEEEeCCCC--CChhHHHHHHHHH---hcCCcEEEEEecCCCC
Q 026538 172 RVSLKRVCLLIDTKWG--VKPRDHELISLME---RSQTKYQVVLTKTDTV 216 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~---~~~~piilv~NK~Dl~ 216 (237)
+|++++|+|+++. +......+.+.+. ..+.|+++|+||+|+.
T Consensus 85 ---ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 85 ---VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred ---CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 9999999998754 1112122222222 2478999999999985
No 71
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.69 E-value=6.1e-16 Score=119.50 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=71.2
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccC-CCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
+|+++|.+|||||||+|+|.+......... .+.++....+......+.+|||||.... ......++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~--- 68 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQD----------RANLAAEI--- 68 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhh----------hHHHhhhc---
Confidence 799999999999999999998742111111 1122322233223567899999996431 11122222
Q ss_pred ccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCChH
Q 026538 173 VSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~~ 219 (237)
..+|++++|+|...+.+... ..++..+.. .+.|+++|+||+|+.+..
T Consensus 69 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 69 RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 119 (166)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence 23899999999876433332 234444443 368999999999997544
No 72
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.68 E-value=6.6e-16 Score=119.78 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
.++|+++|.+|||||||+++|..... ....+..|.+.. .....+..+.+|||||... . ..+...++..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~~~~-~~~~~~~~~~l~Dt~G~~~------~----~~~~~~~~~~ 76 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDK------I----RPLWRHYYTG 76 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC-ccccCCcccceE-EEEECCEEEEEEECCCCHH------H----HHHHHHHhcc
Confidence 47999999999999999999987632 222222222221 1222467799999999632 1 2223334443
Q ss_pred cccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
+|++++|+|++.. +......+.+.+.. .++|+++|+||+|+..
T Consensus 77 ---a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 77 ---TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred ---CCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 9999999998764 22222223333332 3589999999999864
No 73
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.68 E-value=8.7e-16 Score=117.40 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=68.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|||||||+|++++... .....+++.+. ..... ...+.+|||||... +..+...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~l~~~ 68 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQ 68 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc----------hHHHHHH
Confidence 5899999999999999999998732 12222222211 11111 23477899999643 2334445
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~ 217 (237)
|+.. ++++++|+|..+..+... ..++..+. ..+.|+++|+||+|+..
T Consensus 69 ~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 69 YMRT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 5554 899999999775322111 12333332 23689999999999865
No 74
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.68 E-value=9.8e-16 Score=118.64 Aligned_cols=111 Identities=18% Similarity=0.273 Sum_probs=73.1
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
+|+++|.+|||||||+++|.+. ......+..|.+.. .+...+..+.+|||||... . ..+...|+..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~~~i~D~~G~~~------~----~~~~~~~~~~-- 66 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT-KLRLDKYEVCIFDLGGGAN------F----RGIWVNYYAE-- 66 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE-EEEECCEEEEEEECCCcHH------H----HHHHHHHHcC--
Confidence 4799999999999999999976 32333344444332 2333467899999999532 2 2233445544
Q ss_pred cccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCChH
Q 026538 174 SLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~~ 219 (237)
+|++++|+|++....... ..++..+.. .++|+++|+||+|+....
T Consensus 67 -a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 67 -AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred -CCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 999999999876422221 233333322 368999999999987544
No 75
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.68 E-value=7.2e-16 Score=136.31 Aligned_cols=129 Identities=20% Similarity=0.274 Sum_probs=87.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee-----------------------c------cCCCCceEEEEEEE---cCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----------------------T------SDKPGLTQTINFFK---LGT 138 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-----------------------~------~~~~g~t~~~~~~~---~~~ 138 (237)
...+|+++|++++|||||+++|+....... + ...+|+|.+..+.. .+.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 456999999999999999999985421110 0 11578888875443 367
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCC--CCChhHHHHHHHHHhcCC-cEEEEEecCCC
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERSQT-KYQVVLTKTDT 215 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~--~~~~~~~~~~~~l~~~~~-piilv~NK~Dl 215 (237)
.+.+|||||+.+ +...+......+|++++|+|+.. ++.....+.+..+...++ |+++|+||+|+
T Consensus 85 ~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 85 YFTIVDCPGHRD-------------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 151 (425)
T ss_pred EEEEEECCCccc-------------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 899999999743 11112222334999999999987 676666676666666665 58999999999
Q ss_pred CC--hHHHHHHHHHHHHHH
Q 026538 216 VF--PIDVARRAMQIEEVI 232 (237)
Q Consensus 216 ~~--~~~~~~~~~~l~~~l 232 (237)
.. .+......+++.+.+
T Consensus 152 ~~~~~~~~~~~~~~i~~~l 170 (425)
T PRK12317 152 VNYDEKRYEEVKEEVSKLL 170 (425)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 75 222333444444433
No 76
>PRK12735 elongation factor Tu; Reviewed
Probab=99.67 E-value=1.8e-15 Score=132.51 Aligned_cols=130 Identities=21% Similarity=0.306 Sum_probs=89.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc------ccee--------eccCCCCceEEEEEEE---cCCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ------WGVV--------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~------~~~~--------~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~ 153 (237)
...+|+++|++++|||||+++|++. .... ......|+|.+..... .+..+.++||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 4468999999999999999999862 1100 0112466777764333 35679999999963
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEE-EEEecCCCCChHHHHH-HHHHHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVAR-RAMQIEEV 231 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~Dl~~~~~~~~-~~~~l~~~ 231 (237)
.++.........+|++++|+|+..+....+.+.+..+...++|.+ +|+||+|+.+.++..+ ..+++++.
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 233444444455899999999998887888888888888889965 5799999985444322 33345444
Q ss_pred HH
Q 026538 232 IF 233 (237)
Q Consensus 232 l~ 233 (237)
+.
T Consensus 158 l~ 159 (396)
T PRK12735 158 LS 159 (396)
T ss_pred HH
Confidence 43
No 77
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.67 E-value=2e-15 Score=120.70 Aligned_cols=127 Identities=22% Similarity=0.301 Sum_probs=80.5
Q ss_pred CEEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEE------------------------------cC----
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK------------------------------LG---- 137 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~------------------------------~~---- 137 (237)
.+|+++|+.|+|||||+.+|.+.. .........+.|....+.. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 378999999999999999998652 0000011111121111000 02
Q ss_pred --CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-CChhHHHHHHHHHhcCC-cEEEEEecC
Q 026538 138 --TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKT 213 (237)
Q Consensus 138 --~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~~-piilv~NK~ 213 (237)
..+.+|||||+. .+...++.....+|++++|+|+..+ ........+..+...+. |+++|+||+
T Consensus 81 ~~~~i~~iDtPG~~-------------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 81 LVRHVSFVDCPGHE-------------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred cccEEEEEECCChH-------------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 578999999952 2344555555558999999999863 34444555555555554 689999999
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 026538 214 DTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 214 Dl~~~~~~~~~~~~l~~~l 232 (237)
|+....+.....+.+++.+
T Consensus 148 Dl~~~~~~~~~~~~i~~~~ 166 (203)
T cd01888 148 DLVKEEQALENYEQIKKFV 166 (203)
T ss_pred hccCHHHHHHHHHHHHHHH
Confidence 9987665555556665544
No 78
>PRK12736 elongation factor Tu; Reviewed
Probab=99.67 E-value=1.8e-15 Score=132.38 Aligned_cols=130 Identities=21% Similarity=0.293 Sum_probs=92.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccc-----ee---------eccCCCCceEEEEEEE---cCCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VV---------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~-----~~---------~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~ 153 (237)
...+|+++|+.++|||||+++|++... .. .....+|+|.+..... .+..+.+|||||+.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH----
Confidence 446999999999999999999987310 00 0111456777764333 25678999999963
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHH-HHHHHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEEV 231 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~-~~~~l~~~ 231 (237)
.++..++.....+|++++|+|+..++...+.+.+..+...++| +++|+||+|+.+.++..+ ..+++.+.
T Consensus 87 ---------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~ 157 (394)
T PRK12736 87 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVREL 157 (394)
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 2334444444558999999999988888888888888888998 678999999986555443 33355554
Q ss_pred HH
Q 026538 232 IF 233 (237)
Q Consensus 232 l~ 233 (237)
+.
T Consensus 158 l~ 159 (394)
T PRK12736 158 LS 159 (394)
T ss_pred HH
Confidence 43
No 79
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.67 E-value=3.9e-16 Score=120.34 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=68.1
Q ss_pred EEEEecCCCCchhhHHHHHhcccce--eeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~--~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+|+++|++|||||||+|+|++.... ........+|.... +...+..+.+|||||... +..+...+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES----------LRSLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHH
Confidence 5899999999999999999875210 01111122232221 222367899999999643 12222333
Q ss_pred HhccccccEEEEEEeCCCCCChh-HHHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLME----RSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~----~~~~piilv~NK~Dl~~~ 218 (237)
+.. +|++++|+|+...-... ...++..+. ..+.|+++|+||+|+...
T Consensus 71 ~~~---~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 71 YAE---CHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred hCC---CCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 333 89999999987532111 122222222 247899999999998654
No 80
>PLN03127 Elongation factor Tu; Provisional
Probab=99.67 E-value=2.3e-15 Score=133.21 Aligned_cols=129 Identities=20% Similarity=0.279 Sum_probs=90.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc-----cee---------eccCCCCceEEEEEEEc---CCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~---------~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~ 153 (237)
...+|+++|+.++|||||+++|.+.. ... .....+|+|.+...... +..+.++||||+.+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 45699999999999999999997320 000 11123678887644332 56799999999853
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHHHH-HHHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRA-MQIEEV 231 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~~~-~~l~~~ 231 (237)
++.........+|++++|+|+..++..++.+.+..+...++| +++|+||+|+.+.++..+.. +++.+.
T Consensus 137 ----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~ 206 (447)
T PLN03127 137 ----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELREL 206 (447)
T ss_pred ----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 222222222349999999999988888889999999988999 57899999998655443333 344444
Q ss_pred H
Q 026538 232 I 232 (237)
Q Consensus 232 l 232 (237)
+
T Consensus 207 l 207 (447)
T PLN03127 207 L 207 (447)
T ss_pred H
Confidence 3
No 81
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.67 E-value=1.2e-15 Score=142.00 Aligned_cols=113 Identities=25% Similarity=0.375 Sum_probs=86.0
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.+.|+|+++|+.++|||||+++|.+.. ......+|.|.++..+. .+..++||||||+.. |..+..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~--v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~----------F~~m~~ 355 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN--VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA----------FTAMRA 355 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--ccccccCceeeeccEEEEEECCEEEEEEECCCCcc----------chhHHH
Confidence 467899999999999999999998763 22334566776654332 367899999999754 112222
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.+. ..+|++++|+|+.++......+.+..+...++|+++|+||+|+..
T Consensus 356 rga---~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 356 RGA---QVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred hhh---hhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc
Confidence 222 238999999999988888888888888888999999999999964
No 82
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.67 E-value=6.1e-16 Score=138.79 Aligned_cols=130 Identities=21% Similarity=0.266 Sum_probs=96.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCC--cccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGF--AYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~--~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.||+|||||+|+|+|.+ ..+++.||+|.+.... ..+..+.++|+||..+ +.+.+ +...+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D------E~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED------EKVARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch------HHHHHH
Confidence 469999999999999999999996 7899999999886543 3477799999999644 22222 234455
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
|+.. ..+|+++.|+|+++- +....+.-++.+.+.|+++++|++|........-..+.+++.++
T Consensus 76 ~ll~-~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG 138 (653)
T COG0370 76 FLLE-GKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLG 138 (653)
T ss_pred HHhc-CCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhC
Confidence 5543 348999999999843 44455566677889999999999998655444444555555554
No 83
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.67 E-value=4.2e-15 Score=120.35 Aligned_cols=127 Identities=20% Similarity=0.168 Sum_probs=88.6
Q ss_pred EEEEecCCCCchhhHHHHHhcccc-----eeec--c-----CCCCceEE---------------------------EEEE
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWG-----VVRT--S-----DKPGLTQT---------------------------INFF 134 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~-----~~~~--~-----~~~g~t~~---------------------------~~~~ 134 (237)
+|+++|..++|||||+++|..... .... . ...|.|.. -.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 578999999999999999985310 0000 0 00111110 0111
Q ss_pred EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc--ccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEec
Q 026538 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (237)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK 212 (237)
..+..+.++||||+.. +.+...... ..+|++++|+|+..++...+..++.++...++|+++|+||
T Consensus 81 ~~~~~i~liDtpG~~~-------------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGHER-------------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCcHH-------------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEC
Confidence 2356799999999742 112222221 2389999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q 026538 213 TDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 213 ~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
+|+.+.....+..+.+.+.++
T Consensus 148 ~D~~~~~~~~~~~~~l~~~L~ 168 (224)
T cd04165 148 IDLAPANILQETLKDLKRILK 168 (224)
T ss_pred ccccCHHHHHHHHHHHHHHhc
Confidence 999887777777777777654
No 84
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.67 E-value=1.4e-15 Score=116.43 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=70.9
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--E-EcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~-~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+|+++|++|||||||+|+|++.. . .....++++.+... . ..+ ..+.+|||||... +..+...+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~~ 69 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-F-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER----------FRSLIPSY 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-C-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence 79999999999999999999884 2 22344444444321 1 112 4589999999532 22334444
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHH-hc--CCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RS--QTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-~~--~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|.+.+-+... ..++..+. .. +.|+++|+||+|+..
T Consensus 70 ~~~---~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 70 IRD---SSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence 443 899999999875422222 23444333 23 489999999999953
No 85
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.67 E-value=1.3e-15 Score=122.57 Aligned_cols=129 Identities=18% Similarity=0.193 Sum_probs=83.8
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeecc-CCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~-~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
+|+++|.+|+||||++|.|+|... .... ...+.|..+.. ...+..+.+|||||+.++.... .+....+.+...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~-f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~--~~~~~~i~~~l~ 78 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEV-FKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD--EEIIREIKRCLS 78 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS--SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH--HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccc-eeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccH--HHHHHHHHHHHH
Confidence 799999999999999999999852 2222 22334444332 3358889999999997754322 222333444334
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhc-----CCcEEEEEecCCCCChHHHHHHHH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAM 226 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~Dl~~~~~~~~~~~ 226 (237)
...++.+++++|++.. .++..+...++.+... ...++||+|.+|...+..+.+.++
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~ 139 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLK 139 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHH
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHh
Confidence 4456689999999988 7888888877777642 456999999999887665544444
No 86
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=1.7e-15 Score=116.67 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=71.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-cC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|++|+|||||++++.+...........+......... .+ ..+.+|||||... +..+...+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER----------FRTITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence 36999999999999999999987631111112222222222222 22 4689999999421 22333344
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
+.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 73 ~~~---~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 73 YRS---ANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred hcc---CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 433 899999999876432222 345554443 36899999999998744
No 87
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.67 E-value=2.4e-15 Score=136.83 Aligned_cols=113 Identities=22% Similarity=0.322 Sum_probs=85.0
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCC-eEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT-KLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
.+.|+|+++|++|+|||||+++|.+.. ......+|+|.++..+. .+. .+.+|||||+.. +..+.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~--v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~----------F~~~r 152 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK--VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA----------FTSMR 152 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--cccccCCceeecceEEEEEECCCcEEEEEECCCCcc----------hhhHH
Confidence 456899999999999999999999873 22344567777764332 233 899999999753 11222
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
..+ ...+|++++|+|+.++...+..+.+..+...++|+++++||+|+..
T Consensus 153 ~rg---a~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 153 ARG---AKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred Hhh---hccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc
Confidence 222 2338999999999988888888888887778999999999999863
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.66 E-value=9e-16 Score=118.03 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=70.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|.+|||||||++++++........+..+.+... ........+.+|||||... +..+...|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~ 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER----------FQTMHASYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh----------hhhhhHHHh
Confidence 379999999999999999998773211111111111111 1111234688999999532 333444555
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTV 216 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~ 216 (237)
.. +|++++|+|.+++.+... ..++..+... +.|+++|+||+|+.
T Consensus 71 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 71 HK---AHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 44 899999999876533322 3455555443 68999999999985
No 89
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.66 E-value=2.9e-15 Score=137.10 Aligned_cols=127 Identities=24% Similarity=0.355 Sum_probs=93.8
Q ss_pred EEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.|+++|+.++|||||+++|++.+ +........|.|.+..+... +..+.+|||||+. .+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------------~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------------KFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------------HHHHHH
Confidence 68999999999999999999752 11122344688887754432 5668999999963 223333
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
......+|++++|+|+..++.+++.+.+..+...++| +++|+||+|+.+.+......+++.+.+.
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~ 134 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLR 134 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 3334449999999999999889888888888887887 5799999999876666666666665543
No 90
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.66 E-value=9.4e-16 Score=117.21 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=71.0
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
+|+++|.+|||||||++++++.. ........+.+... +...+..+.+|||||... . ......++..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~------~----~~~~~~~~~~-- 66 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET-VEYKNVSFTVWDVGGQDK------I----RPLWKHYYEN-- 66 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE-EEECCEEEEEEECCCChh------h----HHHHHHHhcc--
Confidence 58999999999999999999884 23333333333322 222367899999999643 1 2222333333
Q ss_pred cccEEEEEEeCCCCC--ChhHHHHHHHHH---hcCCcEEEEEecCCCCChH
Q 026538 174 SLKRVCLLIDTKWGV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~--~~~~~~~~~~l~---~~~~piilv~NK~Dl~~~~ 219 (237)
+|++++|+|+..+- ......+...+. ..+.|+++|+||+|+....
T Consensus 67 -~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 67 -TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 89999999987541 111112222222 2468999999999997644
No 91
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.66 E-value=2.6e-15 Score=113.90 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=70.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeec-cCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~-~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
++|+++|.+|+|||||+|++++.. .... .+..+.+....... ....+.+||+||... +......+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 69 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGK-FDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER----------FRSITPSY 69 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH----------HHHHHHHH
Confidence 479999999999999999999883 2222 22222222222222 245689999999632 22333444
Q ss_pred HhccccccEEEEEEeCCCCCChh-HHHHHHHHHhc---CCcEEEEEecCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTV 216 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~---~~piilv~NK~Dl~ 216 (237)
+.. +|++++|+|+.+.-+.. ...++..+... +.|+++|+||+|+.
T Consensus 70 ~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 70 YRG---AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred hcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 433 89999999987532111 12344444443 48999999999996
No 92
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=9.1e-16 Score=124.12 Aligned_cols=120 Identities=25% Similarity=0.298 Sum_probs=82.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce----EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t----~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
...+|+++|.+|+|||||||+|+.. ....++..+.++ +....+ .+..++||||||+++....+. .+...+.
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~---~~r~~~~ 112 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDA---EHRQLYR 112 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhc-cccceEEecCCCcccchhhhH---HHHHHHH
Confidence 3468889999999999999999976 334455444333 222222 357799999999998543331 1223333
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~Dl~~~ 218 (237)
.++ ...|++++++|+.++.-..+.++++.+.. .+.|+++|+|.+|...+
T Consensus 113 d~l---~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 113 DYL---PKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEP 163 (296)
T ss_pred HHh---hhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcc
Confidence 333 33899999999887766667777666543 35899999999998643
No 93
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.66 E-value=1.5e-15 Score=116.24 Aligned_cols=110 Identities=21% Similarity=0.199 Sum_probs=68.5
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
+|+++|++|+|||||+++|..... ....+..+.+.. .+...+..+.+|||||... . ..+...++..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~-~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~------~----~~~~~~~~~~-- 66 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV-VTTIPTIGFNVE-TVTYKNLKFQVWDLGGQTS------I----RPYWRCYYSN-- 66 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC-cCcCCccCcCeE-EEEECCEEEEEEECCCCHH------H----HHHHHHHhcC--
Confidence 589999999999999999977632 221111111111 1222467799999999642 1 2223333433
Q ss_pred cccEEEEEEeCCCCCC--hhHHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 174 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~~--~~~~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
+|++++|+|++...+ .....+...+.. .+.|+++|+||+|+...
T Consensus 67 -~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 67 -TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 999999999875321 112233333332 36899999999998643
No 94
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.66 E-value=1.3e-15 Score=140.80 Aligned_cols=113 Identities=21% Similarity=0.375 Sum_probs=84.3
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-------cCCeEEEEeCCCCCCcccchHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-------~~~~~~liDTpG~~~~~~~~~~~~~~~ 162 (237)
.+.|+|+++|++|+|||||+++|.+.. ......+|.|.++..+. .+..+++|||||+.. |.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~----------F~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA----------FS 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc--CccccCCccccccceEEEEEEecCCceEEEEEECCcHHH----------HH
Confidence 466899999999999999999999873 22233455665532221 247899999999632 22
Q ss_pred HHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.+...++.. +|++++|+|+..+......+.+..+...++|+++|+||+|+..
T Consensus 310 ~mr~rg~~~---aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 310 SMRSRGANV---TDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred HHHHHHHHH---CCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc
Confidence 333333332 8999999999988888888888888888999999999999864
No 95
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.66 E-value=2.2e-15 Score=117.35 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=70.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
..+|+++|++|+|||||+++|++... ....+..+.+.. .+...+..+.+|||||... ....| ..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~-~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~~~------~~~~~----~~~~~- 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEV-VHTSPTIGSNVE-EIVYKNIRFLMWDIGGQES------LRSSW----NTYYT- 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceE-EEEECCeEEEEEECCCCHH------HHHHH----HHHhh-
Confidence 36899999999999999999987632 222333332221 2223367899999999632 22222 23333
Q ss_pred cccccEEEEEEeCCCCCCh--hHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 172 RVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
.+|++++|+|++..... ....+.+.+.. .+.|+++|+||+|+..
T Consensus 82 --~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 82 --NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 29999999998754221 11223333322 2589999999999864
No 96
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.66 E-value=5.4e-15 Score=123.37 Aligned_cols=123 Identities=21% Similarity=0.237 Sum_probs=84.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|+||||++|+|++. ....++...+++... .....+..+.+|||||+.+.. ...+.....+..
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~---~~~e~~~~~ik~ 112 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG---YINDQAVNIIKR 112 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH---HHHHHHHHHHHH
Confidence 4579999999999999999999998 445555655544332 222357889999999998642 222223344555
Q ss_pred HHhccccccEEEEEEeCC-CCCChhHHHHHHHHHhc-----CCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTK-WGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~-----~~piilv~NK~Dl~~~ 218 (237)
|+.. ...|+++||.... ..+...+..+++.+... ..++++|+|++|..++
T Consensus 113 ~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 113 FLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred Hhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 5443 3489999995432 24666667777666542 4679999999998754
No 97
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.66 E-value=2.1e-15 Score=115.83 Aligned_cols=110 Identities=17% Similarity=0.182 Sum_probs=68.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
.+|+++|.+|||||||++++..... ....+..|.... .+......+.+|||||... +..+...|+..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~-~~~~pt~g~~~~-~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~- 67 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK----------IRPLWRHYFQN- 67 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-cccCCCCCcceE-EEEECCEEEEEEECCCCHh----------HHHHHHHHhcC-
Confidence 3799999999999999999976532 211111122111 1222467799999999632 22233344444
Q ss_pred ccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 173 VSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
+|++++|+|++.. +......+.+.+.. ...|+++|+||+|+..
T Consensus 68 --ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 68 --TQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred --CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 9999999998753 22222223333322 2589999999999864
No 98
>PLN03126 Elongation factor Tu; Provisional
Probab=99.66 E-value=3.8e-15 Score=132.57 Aligned_cols=131 Identities=21% Similarity=0.245 Sum_probs=92.3
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccce--------------eeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcc
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAY 152 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~--------------~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~ 152 (237)
....+|+++|++++|||||+++|+..... .......|.|.+... ...+..+.+|||||+.+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~-- 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-- 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH--
Confidence 34578999999999999999999963110 011223556666532 23467899999999632
Q ss_pred cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHH-HHHHHHH
Q 026538 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEE 230 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~-~~~~l~~ 230 (237)
++.........+|++++|+|+..+...+..+.+..+...++| +++++||+|+.+.++..+ ..+++.+
T Consensus 157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~ 225 (478)
T PLN03126 157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRE 225 (478)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 233333333448999999999999888888888888888998 778999999987555433 3335555
Q ss_pred HHH
Q 026538 231 VIF 233 (237)
Q Consensus 231 ~l~ 233 (237)
.+.
T Consensus 226 ~l~ 228 (478)
T PLN03126 226 LLS 228 (478)
T ss_pred HHH
Confidence 544
No 99
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.66 E-value=2.9e-15 Score=115.97 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=71.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..+|+++|.+|||||||++++++...........|.+........ ...+.+|||||... +..+...+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 73 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES----------FRSITRSY 73 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence 469999999999999999999987321112222333322222221 34689999999421 22333344
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 74 ~~~---~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 74 YRG---AAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 433 899999999875322222 234444443 3689999999999874
No 100
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.66 E-value=2.2e-15 Score=121.83 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=81.0
Q ss_pred EEEEecCCCCchhhHHHHHhcccce-----------------------------eeccCCCCceEEEEE---EEcCCeEE
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINF---FKLGTKLC 141 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~-----------------------------~~~~~~~g~t~~~~~---~~~~~~~~ 141 (237)
+|+++|+.++|||||+.+|+...+. ......+|+|++... ...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999743110 001113456766533 33478899
Q ss_pred EEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-------CChhHHHHHHHHHhcC-CcEEEEEecC
Q 026538 142 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVVLTKT 213 (237)
Q Consensus 142 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~-~piilv~NK~ 213 (237)
+|||||+.+ +...++.....+|++++|+|+..+ ........+......+ .|+++|+||+
T Consensus 81 liDtpG~~~-------------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRD-------------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM 147 (219)
T ss_pred EEECCChHH-------------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 999999632 122233333449999999998863 3334444444455555 5799999999
Q ss_pred CCCC----hHHHHHHHHHHHHHHH
Q 026538 214 DTVF----PIDVARRAMQIEEVIF 233 (237)
Q Consensus 214 Dl~~----~~~~~~~~~~l~~~l~ 233 (237)
|+.. ........+.++..+.
T Consensus 148 Dl~~~~~~~~~~~~i~~~l~~~l~ 171 (219)
T cd01883 148 DDVTVNWSEERYDEIKKELSPFLK 171 (219)
T ss_pred ccccccccHHHHHHHHHHHHHHHH
Confidence 9973 3334455555554443
No 101
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.65 E-value=1.4e-15 Score=116.81 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=70.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|+|||||++++++.. ......+++.+. ..... ...+.+|||||..+ +..+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 69 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY---FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE----------FSAMREQ 69 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc----------hhHHHHH
Confidence 589999999999999999999873 233333333221 11111 24588999999643 2233444
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~ 218 (237)
++.. +|++++|+|++...+... ..++..+. ..+.|+++|+||+|+...
T Consensus 70 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 70 YMRT---GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 4443 899999999875322211 22333332 236899999999998653
No 102
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.65 E-value=3.8e-15 Score=114.52 Aligned_cols=112 Identities=18% Similarity=0.162 Sum_probs=69.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|.+|||||||+|+|++........+..+..... ........+.+|||||... +..+...++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~ 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE----------YLEVRNEFY 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHH----------HHHHHHHHh
Confidence 379999999999999999999884222112221111111 1111245688999999632 223334444
Q ss_pred hccccccEEEEEEeCCCCCChh-HHHHHHHHHh--------cCCcEEEEEecCCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER--------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~--------~~~piilv~NK~Dl~~ 217 (237)
.. +|++++|+|.++..+.. ...++..+.. .+.|+++|+||+|+.+
T Consensus 71 ~~---~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 71 KD---TQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred cc---CCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 33 89999999987542211 1234433322 3578999999999873
No 103
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.65 E-value=2.6e-15 Score=124.98 Aligned_cols=126 Identities=20% Similarity=0.310 Sum_probs=84.0
Q ss_pred EEEEecCCCCchhhHHHHHhccccee----eccC------------CCCceEE---EEEEEcCCeEEEEeCCCCCCcccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVV----RTSD------------KPGLTQT---INFFKLGTKLCLVDLPGYGFAYAK 154 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~----~~~~------------~~g~t~~---~~~~~~~~~~~liDTpG~~~~~~~ 154 (237)
+|+++|.+|+|||||+|+|+...+.. .+.. ..+.+.. ..+...+..+.+|||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 58999999999999999998642110 0100 0111111 12333467899999999642
Q ss_pred hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
+......++. .+|++++|+|+..+.......+++.+...++|+++|+||+|+... +....++.+++.++
T Consensus 77 ------f~~~~~~~l~---~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~-~~~~~~~~l~~~~~ 145 (268)
T cd04170 77 ------FVGETRAALR---AADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA-DFDKTLAALQEAFG 145 (268)
T ss_pred ------HHHHHHHHHH---HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC-CHHHHHHHHHHHhC
Confidence 1111222222 299999999998887777777777788889999999999998754 34455666666554
No 104
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.65 E-value=3.7e-15 Score=119.94 Aligned_cols=110 Identities=22% Similarity=0.254 Sum_probs=72.6
Q ss_pred EEEEecCCCCchhhHHHHHhcccceee-----------cc------CCCCceEEE---EEEE-----cCCeEEEEeCCCC
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVR-----------TS------DKPGLTQTI---NFFK-----LGTKLCLVDLPGY 148 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~-----------~~------~~~g~t~~~---~~~~-----~~~~~~liDTpG~ 148 (237)
+|+++|+.|+|||||+++|+....... .. ...|.|... .+.. ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 789999999999999999987532110 00 011222211 1111 1356899999997
Q ss_pred CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
.+- ......++. .+|++++|+|+..+.......+++.+...+.|+++|+||+|++
T Consensus 82 ~~f----------~~~~~~~~~---~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF----------MDEVAAALR---LSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cch----------HHHHHHHHH---hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 541 111222222 2899999999988776666666666666679999999999986
No 105
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.65 E-value=3.3e-15 Score=115.32 Aligned_cols=111 Identities=15% Similarity=0.233 Sum_probs=69.9
Q ss_pred EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcccc
Q 026538 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (237)
|+++|.+|||||||++++.+........+..|.. ...+...+..+.+|||||... .. .+...|+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~-~~~i~~~~~~l~i~Dt~G~~~------~~----~~~~~~~~~--- 67 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN-SVAIPTQDAIMELLEIGGSQN------LR----KYWKRYLSG--- 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc-eEEEeeCCeEEEEEECCCCcc------hh----HHHHHHHhh---
Confidence 7899999999999999999873212122222221 122333467899999999643 12 222233333
Q ss_pred ccEEEEEEeCCCCCChh-HHHHHHHHH-h-cCCcEEEEEecCCCCChH
Q 026538 175 LKRVCLLIDTKWGVKPR-DHELISLME-R-SQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 175 ~d~v~~vvd~~~~~~~~-~~~~~~~l~-~-~~~piilv~NK~Dl~~~~ 219 (237)
+|++++|+|+++..+.. ...++..+. . .++|+++|+||+|+....
T Consensus 68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 99999999987643211 122333332 2 478999999999986543
No 106
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.65 E-value=2.1e-15 Score=116.97 Aligned_cols=117 Identities=20% Similarity=0.272 Sum_probs=73.8
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
...++|+++|++|||||||+++|.+.. .....+..|.+... ....+..+.+|||||... . ......++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~-~~~~~~t~g~~~~~-i~~~~~~~~~~D~~G~~~------~----~~~~~~~~ 79 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASED-ISHITPTQGFNIKT-VQSDGFKLNVWDIGGQRA------I----RPYWRNYF 79 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCC-CcccCCCCCcceEE-EEECCEEEEEEECCCCHH------H----HHHHHHHh
Confidence 346799999999999999999999873 23333333433222 222367899999999532 1 12223333
Q ss_pred hccccccEEEEEEeCCCCCC--hhHHHHHHHH---HhcCCcEEEEEecCCCCChHHH
Q 026538 170 STRVSLKRVCLLIDTKWGVK--PRDHELISLM---ERSQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l---~~~~~piilv~NK~Dl~~~~~~ 221 (237)
. .+|++++|+|+..... .....+...+ ...++|+++++||+|+....+.
T Consensus 80 ~---~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 133 (173)
T cd04155 80 E---NTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA 133 (173)
T ss_pred c---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH
Confidence 3 3899999999875311 1111222222 2246899999999998764433
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=3.4e-15 Score=117.21 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=70.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
..+|+++|.+|||||||++++..... ....+..|.+.. .+...+..+.+|||||... . ..+...|+..
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~-~~~~pt~g~~~~-~~~~~~~~~~i~D~~Gq~~------~----~~~~~~~~~~ 84 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK------I----RPLWRHYFQN 84 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-ccccCCcceeEE-EEEECCEEEEEEECCCCHH------H----HHHHHHHhcc
Confidence 46999999999999999999986532 222222222211 1223367799999999521 2 2333444443
Q ss_pred cccccEEEEEEeCCCCCCh--hHHHHHHHHHh---cCCcEEEEEecCCCCChH
Q 026538 172 RVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~Dl~~~~ 219 (237)
+|++++|+|+++..+- ...++...+.. .+.|+++|+||+|+....
T Consensus 85 ---a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 85 ---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred ---CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 8999999998753211 11122222221 368999999999986543
No 108
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.65 E-value=1.7e-15 Score=113.86 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=65.6
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
+|+++|++|||||||+|+|.+.. .. . ..|..+.+. -.+|||||... .....+..+.. + ..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~-~~---~--~~t~~~~~~-----~~~iDt~G~~~-----~~~~~~~~~~~-~---~~ 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE-IL---Y--KKTQAVEYN-----DGAIDTPGEYV-----ENRRLYSALIV-T---AA 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc-cc---c--ccceeEEEc-----CeeecCchhhh-----hhHHHHHHHHH-H---hh
Confidence 79999999999999999999873 11 1 123222222 17899999621 01112222222 2 33
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.+|++++|+|+..+.+.....+...+ ..|+++|+||+|+.+
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~~---~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASIF---VKPVIGLVTKIDLAE 102 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHhc---cCCeEEEEEeeccCC
Confidence 49999999998776554444443332 359999999999865
No 109
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.65 E-value=3.7e-15 Score=116.29 Aligned_cols=110 Identities=16% Similarity=0.204 Sum_probs=69.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.++|+++|.+|||||||++++..... . ...|.+..+.. ....+..+.+|||||... +..+...|+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~--~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~ 79 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-V--TTIPTIGFNVETVTYKNISFTVWDVGGQDK----------IRPLWRHYYT 79 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-C--CcCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHHhC
Confidence 47999999999999999999975522 1 22222222221 222366799999999632 2233344444
Q ss_pred ccccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
. +|++++|+|++.. +......+...+.. .+.|+++|+||+|+..
T Consensus 80 ~---ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 80 N---TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred C---CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 4 9999999998753 22222222222222 2589999999999864
No 110
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.65 E-value=1.9e-15 Score=116.31 Aligned_cols=114 Identities=20% Similarity=0.188 Sum_probs=71.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..+|+++|++|||||||++++++........+..+.+.... +...+ ..+.+|||||... +..+...+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 72 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER----------YRAITSAY 72 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHHHHHHH
Confidence 46899999999999999999998742112222222211111 11112 4688999999532 23344444
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
+.. ++++++|+|.++..+... ..++..+.. .+.|+++|+||+|+...
T Consensus 73 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 73 YRG---AVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred HCC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 443 899999999875322222 234444433 25899999999998643
No 111
>PRK00049 elongation factor Tu; Reviewed
Probab=99.64 E-value=5.2e-15 Score=129.50 Aligned_cols=130 Identities=21% Similarity=0.307 Sum_probs=92.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccc-----ee---------eccCCCCceEEEEEEEc---CCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~-----~~---------~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~ 153 (237)
...+|+++|+.++|||||+++|++... .. .....+|+|.+...... +..+.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 346899999999999999999997310 00 01124677777654333 5679999999963
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEE-EEEecCCCCChHHHH-HHHHHHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVA-RRAMQIEEV 231 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~Dl~~~~~~~-~~~~~l~~~ 231 (237)
.++.........+|++++|+|+..++...+.+++..+...++|.+ +++||+|+.+.++.. ...+++++.
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~ 157 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence 233333444556999999999998888888888888888899976 689999998644433 233455555
Q ss_pred HH
Q 026538 232 IF 233 (237)
Q Consensus 232 l~ 233 (237)
+.
T Consensus 158 l~ 159 (396)
T PRK00049 158 LS 159 (396)
T ss_pred HH
Confidence 43
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=3.7e-15 Score=117.07 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=70.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
..+|+++|++|||||||++++..... ....+..+.... .....+..+.+|||||... +..+...|+..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~-~~~~~T~~~~~~-~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~ 84 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYKNLKFTMWDVGGQDK----------LRPLWRHYYQN 84 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-cccCCccccceE-EEEECCEEEEEEECCCCHh----------HHHHHHHHhcC
Confidence 36999999999999999999976522 222222222211 1222467799999999632 22233344444
Q ss_pred cccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
+|++++|+|+++. +......+.+.+.. ...|+++|+||+|+..
T Consensus 85 ---ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 85 ---TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred ---CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 9999999998753 22222223333332 3589999999999864
No 113
>PRK00007 elongation factor G; Reviewed
Probab=99.64 E-value=2.9e-15 Score=139.56 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=95.9
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccce----eecc------------CCCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~----~~~~------------~~~g~t~~~---~~~~~~~~~~liDTpG~~~ 150 (237)
...++|+++|++|+|||||+|+|+...+. ..+. ..+|+|.+. .+.+.+..++++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 35679999999999999999999742110 1111 245566654 3444588899999999742
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
+..........+|++++|+|+..+++.++..++..+...++|+++++||+|+.... ....++.+++
T Consensus 88 -------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-~~~~~~~i~~ 153 (693)
T PRK00007 88 -------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-FYRVVEQIKD 153 (693)
T ss_pred -------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 11112222333899999999999999999999999999999999999999998644 5566777777
Q ss_pred HHHh
Q 026538 231 VIFY 234 (237)
Q Consensus 231 ~l~~ 234 (237)
.++.
T Consensus 154 ~l~~ 157 (693)
T PRK00007 154 RLGA 157 (693)
T ss_pred HhCC
Confidence 6654
No 114
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.64 E-value=2.4e-15 Score=116.56 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=67.6
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
+|+++|.+|||||||+++|.+.. . ....+....+. .+...+..+.+|||||... .. .....++..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-~--~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~------~~----~~~~~~~~~- 66 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-F--MQPIPTIGFNVETVEYKNLKFTIWDVGGKHK------LR----PLWKHYYLN- 66 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-C--CCcCCcCceeEEEEEECCEEEEEEECCCChh------cc----hHHHHHhcc-
Confidence 58999999999999999999873 1 22222111122 1223467899999999643 11 222233333
Q ss_pred ccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 173 VSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
+|++++|+|++.. +......+...+.. .+.|+++|+||+|+..
T Consensus 67 --ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 67 --TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred --CCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 8999999998753 22222222223322 2479999999999864
No 115
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.64 E-value=5.3e-15 Score=134.41 Aligned_cols=111 Identities=23% Similarity=0.354 Sum_probs=79.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC-ceEEEEEEE--c-------------------CCeEEEEeCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFK--L-------------------GTKLCLVDLPGY 148 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-~t~~~~~~~--~-------------------~~~~~liDTpG~ 148 (237)
+.|.|+++|++|+|||||+|+|.+.. .....+| +|+++.... . ...+.+|||||+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~---v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSA---VAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc---cccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence 45899999999999999999999873 2223333 444321110 0 023889999996
Q ss_pred CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.. +..+...++. .+|++++|+|+.+++...+.+.+..+...++|+++|+||+|+.+
T Consensus 80 e~----------f~~l~~~~~~---~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 80 EA----------FTNLRKRGGA---LADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred Hh----------HHHHHHHHHh---hCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 42 2222223333 39999999999988888888888888888999999999999974
No 116
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.64 E-value=3.3e-15 Score=112.86 Aligned_cols=118 Identities=25% Similarity=0.231 Sum_probs=69.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--E-EcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~-~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
++|+++|.+|+|||||+|+|++.. ......++++.+... . ..+ ..+.+|||||.... ...+......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~~~ 73 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK--FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY------RAIRRLYYRA 73 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc------hHHHHHHHhh
Confidence 589999999999999999999984 555666677766543 2 224 56899999995431 1112222222
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
.......+|.+++|++...........+...... +.|+++|+||+|+....
T Consensus 74 ~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~ 124 (161)
T TIGR00231 74 VESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK 124 (161)
T ss_pred hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch
Confidence 1111122333333333332221222222222222 78999999999997643
No 117
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.64 E-value=4.7e-15 Score=115.83 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=70.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE---EEEEEE----------cCCeEEEEeCCCCCCcccchHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFK----------LGTKLCLVDLPGYGFAYAKEEVK 158 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~---~~~~~~----------~~~~~~liDTpG~~~~~~~~~~~ 158 (237)
..+|+++|.+|||||||++++.+........+..+... .+.+.. ....+.+|||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH---------
Confidence 36999999999999999999988732111111111111 111110 12468899999942
Q ss_pred HHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
.+..+...++.. +|++++|+|..+.-+... ..++..+.. .+.|+++|+||+|+.+
T Consensus 75 -~~~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 75 -RFRSLTTAFFRD---AMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred -HHHHHHHHHhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 233444455544 899999999875322222 234444433 2578999999999864
No 118
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.64 E-value=5.3e-15 Score=113.48 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=70.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce---EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t---~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|++|+|||||+|++++........+..+.+ ..+.+...+..+.+|||||... +......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~ 71 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER----------YRSLAPMYY 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHHh
Confidence 589999999999999999999884212123333322 2233332345789999999421 122222333
Q ss_pred hccccccEEEEEEeCCCCCCh-hHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKP-RDHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
.. +|++++|+|+...-+- ....++..+.. ...|+++|+||+|+.+
T Consensus 72 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 72 RG---AAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 33 8999999998753211 11334444433 3578999999999873
No 119
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.64 E-value=6.5e-15 Score=113.81 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=71.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|++|+|||||++++.+........+..+...... +......+.+|||||... +..+...+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER----------FRTITTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHH
Confidence 47999999999999999999998742122222222222221 111234689999999532 22333344
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|+.+..+... ..++..+.. .+.|+++|+||+|+..
T Consensus 73 ~~~---ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 73 YRG---AMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred hCC---CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 433 899999999875422211 234444433 3689999999999974
No 120
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.64 E-value=2.3e-15 Score=123.15 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=89.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
....|+++|.||+|||||.|.++|. .+..++....||+.-.. ......+.++||||+........ ......+...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~-~~l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRR-HHLMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhh-HHHHHHhhhC
Confidence 3468999999999999999999999 78889998888876532 23367799999999865322111 0111123334
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc-CCcEEEEEecCCCCChH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-~~piilv~NK~Dl~~~~ 219 (237)
+..+...||+|++|+|++..-......++..+... .+|-++|+||.|++...
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k 201 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQK 201 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhh
Confidence 44445559999999998853333344455555443 68999999999987544
No 121
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.64 E-value=5.8e-15 Score=129.24 Aligned_cols=130 Identities=22% Similarity=0.300 Sum_probs=90.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc-----cee---------eccCCCCceEEEEEEEc---CCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~---------~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~ 153 (237)
...+|+++|+.++|||||+++|++.. ... .....+|+|.+...... +..+.+|||||+.+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~--- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH---
Confidence 34689999999999999999998431 000 01123677777643332 55699999999742
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEE-EEEecCCCCChHHHHH-HHHHHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVAR-RAMQIEEV 231 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~Dl~~~~~~~~-~~~~l~~~ 231 (237)
+...++.....+|++++|+|+..+....+.+.+..+...++|.+ +|+||+|+.+.++..+ ..+++++.
T Consensus 88 ----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~ 157 (394)
T TIGR00485 88 ----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (394)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 33444444455899999999998888888888888888888865 6899999987554333 23345444
Q ss_pred HH
Q 026538 232 IF 233 (237)
Q Consensus 232 l~ 233 (237)
+.
T Consensus 158 l~ 159 (394)
T TIGR00485 158 LS 159 (394)
T ss_pred HH
Confidence 43
No 122
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.63 E-value=5.1e-15 Score=123.45 Aligned_cols=140 Identities=22% Similarity=0.348 Sum_probs=88.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeecc-CCC------CceEEEE-----EEEc--CCeEEEEeCCCCCCcccchHH-
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKP------GLTQTIN-----FFKL--GTKLCLVDLPGYGFAYAKEEV- 157 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-~~~------g~t~~~~-----~~~~--~~~~~liDTpG~~~~~~~~~~- 157 (237)
++|+++|.+|+|||||+|+|++.. ..... ..+ ..+..+. .... ...++++|||||++.......
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSD-IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc-cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999974 22221 111 0111111 1111 346889999999875332211
Q ss_pred ---HHHHHHHHHHHHhc----------cccccEEEEEEeCC-CCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHH
Q 026538 158 ---KDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (237)
Q Consensus 158 ---~~~~~~~~~~~~~~----------~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~ 223 (237)
......-...|+.. ...+|+++|+++++ +++.+.+.+.++.+... +++|-|+.|+|.++++++..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~lt~~el~~ 162 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADTLTPEELQA 162 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGGS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEecccccCHHHHHH
Confidence 11111111222211 11268899999964 68999999999998875 89999999999999999999
Q ss_pred HHHHHHHHHHh
Q 026538 224 RAMQIEEVIFY 234 (237)
Q Consensus 224 ~~~~l~~~l~~ 234 (237)
..+.+.+.+..
T Consensus 163 ~k~~i~~~l~~ 173 (281)
T PF00735_consen 163 FKQRIREDLEE 173 (281)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887763
No 123
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.63 E-value=7.1e-15 Score=112.71 Aligned_cols=110 Identities=20% Similarity=0.164 Sum_probs=69.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--E-EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--N-FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~-~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|++|||||||++++++... .....+..+.+. . +...+ ..+.+|||||... +......
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER----------FRSITSS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHH
Confidence 3899999999999999999998732 112222222221 1 11122 4688999999531 2233344
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|+.+..+... ..++..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~---~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 69 YYRG---AVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 4443 899999999876432222 234444433 3689999999999865
No 124
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=8.2e-15 Score=116.82 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=68.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
++|+++|.+|||||||+++|++... . ....+....+. .... ....+.+|||||... +..+..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~----------~~~~~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-S-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER----------FGGMTR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh----------hhhhHH
Confidence 4799999999999999999998731 1 11112111121 1111 134578999999632 233444
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH-------hcCCcEEEEEecCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-------RSQTKYQVVLTKTDTV 216 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-------~~~~piilv~NK~Dl~ 216 (237)
.|+.. ++++++|+|.+...+... ..++..+. ..++|+++|+||+|+.
T Consensus 69 ~~~~~---a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 69 VYYRG---AVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred HHhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 55544 899999999875422222 22333332 1468999999999996
No 125
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.63 E-value=4.9e-15 Score=116.40 Aligned_cols=111 Identities=19% Similarity=0.209 Sum_probs=68.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-EEEE--E-cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFF--K-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~~~~--~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.+|+++|.+|||||||+++++.... ....+..|.+.. .... . .+..+.+|||||... . ..+...+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~----~~~~~~~ 72 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK------L----RPLWKSY 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccCCCceEEEEEECCCcHh------H----HHHHHHH
Confidence 5899999999999999999987732 211121222221 1221 1 246799999999532 1 2223333
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHH----HHHhcCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELIS----LMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~----~l~~~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|++..-+... ..++. .....+.|+++|+||+|+..
T Consensus 73 ~~~---~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 73 TRC---TDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 333 999999999875311111 11222 22334789999999999863
No 126
>PRK09866 hypothetical protein; Provisional
Probab=99.63 E-value=2.3e-14 Score=128.52 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=53.1
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC--CcEEEEEecCCC
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDT 215 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~--~piilv~NK~Dl 215 (237)
..+.++||||+..+... .+. ..+... ...+|+|+||+|+.......+..+++.+...+ .|+++|+||+|+
T Consensus 230 ~QIIFVDTPGIhk~~~~-~L~----k~M~eq---L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP-HLQ----KMLNQQ---LARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccch-HHH----HHHHHH---HhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 45899999999754221 111 112222 33399999999998877888888888888876 499999999999
Q ss_pred CC
Q 026538 216 VF 217 (237)
Q Consensus 216 ~~ 217 (237)
.+
T Consensus 302 ~d 303 (741)
T PRK09866 302 QD 303 (741)
T ss_pred CC
Confidence 75
No 127
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.63 E-value=6.7e-15 Score=113.51 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=68.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCC-ceEEE-EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-~t~~~-~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.+|+++|.+|||||||++++++........+..+ +.... ........+.+|||||... +..+...++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQ----------FPAMQRLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCc----------chHHHHHHhh
Confidence 5899999999999999999998732111111111 11111 1111235688999999753 1122223333
Q ss_pred ccccccEEEEEEeCCCCCChhH-HHHHHHHHh------cCCcEEEEEecCCCCC
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~piilv~NK~Dl~~ 217 (237)
. ++++++|+|.+...+... ..++..+.. .++|+++|+||+|+..
T Consensus 72 ~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 72 K---GHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 2 899999999876433222 334444432 3689999999999965
No 128
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.1e-15 Score=115.99 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=79.9
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce---EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t---~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
+..++|+++|.+|||||.|+.++.+...........|.. +.+.......++.+|||+|. +.+..+..
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ----------ERFrtit~ 76 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ----------ERFRTITS 76 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecccc----------HHHhhhhH
Confidence 346899999999999999999999874222222222211 11122222467999999994 23557788
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCChH
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~~~ 219 (237)
.|++. +++|++|+|.....+... ..|+..+.+. ++|.++|+||||+.+..
T Consensus 77 syYR~---ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~ 130 (205)
T KOG0084|consen 77 SYYRG---AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKR 130 (205)
T ss_pred hhccC---CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhe
Confidence 88887 999999999875433222 3456666543 68999999999997543
No 129
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.63 E-value=1.7e-14 Score=111.53 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=67.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE---EEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~---~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|++|||||||+|++++...........+.+. .+........+.+|||||... +..+...++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~ 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER----------FQSLGVAFY 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHhHHHHHh
Confidence 3799999999999999999998731111111112111 111111134577999999532 222333444
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHH-Hh------cCCcEEEEEecCCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~------~~~piilv~NK~Dl~~ 217 (237)
.. +|++++++|+.++.+... ..+...+ .. .++|+++|+||+|+..
T Consensus 71 ~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 71 RG---ADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 33 899999999876432111 1222222 11 2689999999999973
No 130
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.63 E-value=4.8e-15 Score=113.64 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=68.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-----EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
++|+++|.+|||||||++++..... .....+++.+ +........+.+|||||... +..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ----------FTAMRDL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------cchHHHH
Confidence 5899999999999999999997631 2222222221 11111134578899999643 1223334
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
|+.. ++++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 69 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 69 YIKN---GQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 4433 899999999875322221 233344432 3689999999999865
No 131
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.63 E-value=5.7e-15 Score=113.21 Aligned_cols=112 Identities=16% Similarity=0.093 Sum_probs=70.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|++|||||||+++|++........+..+..... .+......+.+|||||... +......++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~ 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER----------FRSVTRSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH----------HHHhHHHHh
Confidence 379999999999999999999874212222222221111 1111135688999999532 223333444
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~ 217 (237)
.. +|++++|+|.+...+... ..++..+. ..+.|+++|+||+|+..
T Consensus 71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 71 RG---AAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 33 899999999876433222 23434333 24789999999999864
No 132
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.63 E-value=5e-15 Score=113.44 Aligned_cols=111 Identities=22% Similarity=0.223 Sum_probs=70.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|++|||||||+|+|++........+..+.+........ ...+.+|||||... +......++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~ 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER----------FRTLTSSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHh
Confidence 47999999999999999999987422223344444333222211 35689999999532 122223333
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTV 216 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~ 216 (237)
. .+|++++|+|.+...+... ..++..+. ..+.|+++|+||+|+.
T Consensus 71 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 71 R---GAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred C---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 3 3899999999875422222 22333333 2368899999999997
No 133
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.63 E-value=5.1e-15 Score=113.45 Aligned_cols=111 Identities=20% Similarity=0.198 Sum_probs=70.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-----EEE--EcCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-----~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
.+|+++|.+|+|||||++++++.... ....+....+. ... .....+.+|||||.. .+..+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 68 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT--KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE----------EFDAIT 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH----------HHHHhH
Confidence 37999999999999999999987321 11122222222 111 113568999999942 233444
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~~ 218 (237)
..++.. +|++++|+|....-+... ..++..+.. .++|+++|+||+|+...
T Consensus 69 ~~~~~~---~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 69 KAYYRG---AQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred HHHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc
Confidence 555544 899999999875322211 233333332 37899999999998653
No 134
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=7.7e-15 Score=136.76 Aligned_cols=130 Identities=19% Similarity=0.239 Sum_probs=92.4
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccccee----eccC------------CCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV----RTSD------------KPGLTQTI---NFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~----~~~~------------~~g~t~~~---~~~~~~~~~~liDTpG~~~ 150 (237)
.+..+|+++|++|+|||||+|+|+...+.. .+.+ .+|+|.+. .+.+.+..+.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 356799999999999999999997542111 1111 34566554 3444578899999999864
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
- . .....++. .+|++++|+|+..+....+..++..+...++|+++|+||+|+.... ..+.++.+++
T Consensus 88 ~--~--------~~~~~~l~---~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~ 153 (689)
T TIGR00484 88 F--T--------VEVERSLR---VLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN-FLRVVNQIKQ 153 (689)
T ss_pred h--h--------HHHHHHHH---HhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 1 0 11112222 2899999999998888888888888888899999999999997543 4556666666
Q ss_pred HHH
Q 026538 231 VIF 233 (237)
Q Consensus 231 ~l~ 233 (237)
.++
T Consensus 154 ~l~ 156 (689)
T TIGR00484 154 RLG 156 (689)
T ss_pred HhC
Confidence 554
No 135
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.63 E-value=5.5e-15 Score=116.55 Aligned_cols=111 Identities=22% Similarity=0.259 Sum_probs=69.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
.++|+++|++|||||||+++|.+.. .....+..+.+. ..+...+..+.+|||||... .. .....++..
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~-~~~~~~T~~~~~-~~i~~~~~~~~l~D~~G~~~------~~----~~~~~~~~~ 86 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHPTS-EELTIGNIKFKTFDLGGHEQ------AR----RLWKDYFPE 86 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccCcce-EEEEECCEEEEEEECCCCHH------HH----HHHHHHhcc
Confidence 4799999999999999999999873 222222222221 12223367899999999532 11 222333333
Q ss_pred cccccEEEEEEeCCCC--CChhHHHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538 172 RVSLKRVCLLIDTKWG--VKPRDHELISLME---RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~---~~~~piilv~NK~Dl~~ 217 (237)
++++++|+|+++. +......+...+. ..+.|+++|+||+|+..
T Consensus 87 ---ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 87 ---VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred ---CCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 8999999998753 1112222222222 24689999999999864
No 136
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.63 E-value=7.3e-15 Score=113.29 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=69.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|.+|||||||++++.+........+..+.+... ..... ...+.+|||||... +..+...++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~----------~~~~~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER----------YRTITTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHHc
Confidence 589999999999999999999874211111221211111 11111 35689999999532 222333343
Q ss_pred hccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
.. +|++++|+|.+..-+.. -..+++.+.. ...|+++|+||+|+.+.
T Consensus 72 ~~---~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 72 RG---AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred cC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 33 99999999987532111 1334444443 25789999999999653
No 137
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.62 E-value=5e-15 Score=114.60 Aligned_cols=113 Identities=15% Similarity=0.091 Sum_probs=68.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE---EEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~---~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...+|+++|.+|||||||++++++........+..+... .+.+......+.+|||||... +..+...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~ 73 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER----------FRSLRTP 73 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH----------HHHhHHH
Confidence 457999999999999999999997632111112222111 111111234678999999421 2334444
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH-------hcCCcEEEEEecCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-------RSQTKYQVVLTKTDTV 216 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-------~~~~piilv~NK~Dl~ 216 (237)
++.. +|++++|+|....-+... ..+...+. ..++|+++|+||+|+.
T Consensus 74 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 74 FYRG---SDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HhcC---CCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 4443 899999998765321111 22333222 1357999999999986
No 138
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.62 E-value=8.6e-15 Score=113.49 Aligned_cols=115 Identities=20% Similarity=0.147 Sum_probs=69.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..+|+++|++|||||||++++++........+..+...... +... ...+.+|||||... .. ..+...+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~---~~~~~~~ 72 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER------FR---KSMVQHY 72 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHH------HH---HhhHHHh
Confidence 36899999999999999999987731111111111111111 1111 35689999999532 11 1233344
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~ 218 (237)
+.. +|++++|+|...+.+... ..++..+.. .++|+++|+||+|+...
T Consensus 73 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 73 YRN---VHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ 124 (170)
T ss_pred hcC---CCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh
Confidence 433 899999999876433222 234444433 35899999999998643
No 139
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.62 E-value=1.5e-14 Score=131.82 Aligned_cols=110 Identities=25% Similarity=0.411 Sum_probs=78.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCC-CceEEEEEEEc---------C------------CeEEEEeCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL---------G------------TKLCLVDLPGY 148 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~-g~t~~~~~~~~---------~------------~~~~liDTpG~ 148 (237)
+.|.|+++|++|+|||||+|+|.+.. .....+ +.|+++..+.. + ..+++|||||+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~---v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA---VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc---cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 45899999999999999999998762 233333 24443311110 0 12789999997
Q ss_pred CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
.. +..+...++ ..+|++++|+|+..++.......+..+...++|+++|+||+|+.
T Consensus 82 e~----------f~~~~~~~~---~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 82 EA----------FTNLRKRGG---ALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred HH----------HHHHHHHhH---hhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 43 122222222 23899999999998888888888888888899999999999985
No 140
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.62 E-value=8.1e-15 Score=112.98 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=69.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|++|||||||++++++... . ....+..+.+.. +.. ....+.+|||||... +..+...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~ 70 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-T-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER----------FRTITSS 70 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh----------HHHHHHH
Confidence 5899999999999999999998732 1 122222222221 111 134689999999532 2233344
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
++.. +|++++|+|+++.-+... ..++..+.. .+.|+++|+||+|+...
T Consensus 71 ~~~~---~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 71 YYRG---AHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred HhCc---CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 4443 899999999875321111 234444433 35899999999998643
No 141
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.62 E-value=6.5e-15 Score=113.17 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=66.9
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+|+++|++|||||||+|++++... .....+++.+. .... ....+.+|||||... +..+...+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----------~~~~~~~~ 68 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF---VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE----------FSAMRDQY 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC---CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------chHHHHHH
Confidence 799999999999999999998731 12222222211 1111 134678999999643 11223333
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|+...-+... ..+...+. ..+.|+++|+||+|+.+
T Consensus 69 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 69 MRT---GEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred Hhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 333 899999999875322111 22222222 23689999999999864
No 142
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.62 E-value=6.4e-15 Score=115.00 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=70.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-E--EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~--~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|||||||++++..... .....++..+ . .+...+ ..+.||||||... +..+...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f---~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED----------YDRLRPL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc----------hhhhhhh
Confidence 5899999999999999999998732 1222222211 1 111122 5688999999643 1122223
Q ss_pred HHhccccccEEEEEEeCCCCCChhHH--HHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~piilv~NK~Dl~~~ 218 (237)
++.. +|++++|+|.++..+.... .++..+.. .+.|+++|+||+|+...
T Consensus 69 ~~~~---a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 69 SYPQ---TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred hccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhC
Confidence 3333 8999999998764333222 35555543 26899999999998654
No 143
>PLN03118 Rab family protein; Provisional
Probab=99.62 E-value=9.9e-15 Score=117.25 Aligned_cols=114 Identities=21% Similarity=0.176 Sum_probs=72.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+++|++. ......+..+.+..+..... ...+.+|||||... +..+...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~ 81 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISS-SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER----------FRTLTSS 81 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC-CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh----------hHHHHHH
Confidence 4579999999999999999999987 33333333333332222222 34689999999643 2233344
Q ss_pred HHhccccccEEEEEEeCCCCCChhHH--HHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~----~~~piilv~NK~Dl~~~ 218 (237)
++.. +|++++|+|.+...+.... .+...+.. .+.|+++|+||+|+...
T Consensus 82 ~~~~---~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 135 (211)
T PLN03118 82 YYRN---AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE 135 (211)
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 4443 8999999998764222222 13233322 35789999999998643
No 144
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.62 E-value=1.5e-14 Score=109.73 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=68.5
Q ss_pred EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
|+++|++|||||||+|+|.+... .....+....+. .....+..+.+|||||... +......++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~~-- 67 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF--SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPR----------FRSMWERYCRG-- 67 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC--CcCccCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHHhc--
Confidence 78999999999999999998842 122222222221 1222356789999999632 22233334333
Q ss_pred cccEEEEEEeCCCCCChh-HHHHHHHHH----hcCCcEEEEEecCCCCChHH
Q 026538 174 SLKRVCLLIDTKWGVKPR-DHELISLME----RSQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~-~~~~~~~l~----~~~~piilv~NK~Dl~~~~~ 220 (237)
+|++++|+|+....... ....+..+. ..+.|+++|+||+|+.....
T Consensus 68 -~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 118 (159)
T cd04159 68 -VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS 118 (159)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC
Confidence 89999999987531111 112222221 14689999999999876543
No 145
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.62 E-value=1.3e-14 Score=111.46 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=70.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce-EEE--EEE----EcCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI--NFF----KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t-~~~--~~~----~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
.+|+++|.+|||||||+++|..... ........++ .++ ... .....+.+|||||.. .+..+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGA-VFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE----------LYSDMV 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH----------HHHHHH
Confidence 3799999999999999999986411 1112222222 121 111 123568999999942 223344
Q ss_pred HHHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHhc--CCcEEEEEecCCCCChH
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS--QTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~--~~piilv~NK~Dl~~~~ 219 (237)
..++. .+|++++|+|.++..+.. ...++..+... +.|+++|+||+|+.+..
T Consensus 70 ~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 70 SNYWE---SPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA 123 (164)
T ss_pred HHHhC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 44443 399999999987542221 13445554433 58999999999986543
No 146
>PRK12739 elongation factor G; Reviewed
Probab=99.62 E-value=6e-15 Score=137.44 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=93.4
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccce----eecc------------CCCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~----~~~~------------~~~g~t~~~---~~~~~~~~~~liDTpG~~~ 150 (237)
....+|+++|++|+|||||+++|+...+. ..+. ..+|+|.+. .+.+.+..++++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 35679999999999999999999753210 1111 134556544 3444578899999999742
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
+..........+|++++|+|+..++...+..++..+...++|+++++||+|+.... ....++.+++
T Consensus 86 -------------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~-~~~~~~~i~~ 151 (691)
T PRK12739 86 -------------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD-FFRSVEQIKD 151 (691)
T ss_pred -------------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 11112222233899999999999988888899999888899999999999998543 4556666666
Q ss_pred HHH
Q 026538 231 VIF 233 (237)
Q Consensus 231 ~l~ 233 (237)
.++
T Consensus 152 ~l~ 154 (691)
T PRK12739 152 RLG 154 (691)
T ss_pred HhC
Confidence 554
No 147
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.62 E-value=9.9e-15 Score=112.61 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=69.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCc---eEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~---t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.+|+++|++|||||||++++.+... ....+.+ ......... ...+.+|||||... +..+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF---MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER----------FRAVTR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence 5899999999999999999998731 2222222 111111111 34689999999531 223344
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
.++.. ++++++|+|.++..+... ..++..+.. .+.|+++|+||+|+...
T Consensus 70 ~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 70 SYYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred HHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 44443 899999999876422221 233333322 35789999999998644
No 148
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.62 E-value=9.2e-15 Score=116.37 Aligned_cols=118 Identities=16% Similarity=0.092 Sum_probs=70.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|||||||++++++... .. ...|.++.+. .+...+ ..+.+|||||..... ......+......
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--~~~~~e~~~~~~~ 76 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP--GTAGQEWMDPRFR 76 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-Cc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCC--ccchhHHHHHHHh
Confidence 3799999999999999999998732 11 1222222221 111223 467899999975311 1111112111112
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH------hcCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME------RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~------~~~~piilv~NK~Dl~~ 217 (237)
+ ...+|++++|+|++.+.+... ..+.+.+. ..++|+++|+||+|+..
T Consensus 77 ~---~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 77 G---LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred h---hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 2 234999999999876432222 23333332 24689999999999964
No 149
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.61 E-value=7.4e-15 Score=112.98 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=68.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|||||||+++++... .....++++.+ ..+... ...+.+|||||... +..+...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ----------FTAMRDL 68 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC---CCcccCCcchheEEEEEEECCEEEEEEEEECCCccc----------chhHHHH
Confidence 589999999999999999998662 22222233322 111112 34577999999642 2233334
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|.+..-+... ..++..+. ..+.|+++|+||+|+..
T Consensus 69 ~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 69 YMKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 4444 899999999764322221 23333332 23689999999999964
No 150
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.61 E-value=1.7e-14 Score=112.08 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=68.3
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+|+++|.+|||||||++++++....... .+....+.. .. .....+.+|||||... +..+...+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 69 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNY--KATIGVDFEMERFEILGVPFSLQLWDTAGQER----------FKCIASTY 69 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEeCCChHH----------HHhhHHHH
Confidence 7899999999999999999987321111 121112221 11 1134689999999532 23334444
Q ss_pred HhccccccEEEEEEeCCCCCCh-hHHHHHHHHHhc----CCcEEEEEecCCCCCh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS----QTKYQVVLTKTDTVFP 218 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~----~~piilv~NK~Dl~~~ 218 (237)
+.. +|++++|+|++..-+. ....++..+... ..|+++|+||+|+.+.
T Consensus 70 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 70 YRG---AQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred hcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 443 9999999998753111 123445444322 3568999999998654
No 151
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.61 E-value=1.7e-14 Score=114.90 Aligned_cols=115 Identities=20% Similarity=0.164 Sum_probs=71.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|++|||||||++++.+........+..+......... . ...+.+|||||... +..+...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~ 74 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER----------FRTITST 74 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh----------HHHHHHH
Confidence 457999999999999999999998731111112222111111111 1 24688999999532 2233344
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~~ 218 (237)
++.. ++++++|+|++...+... ..++..+.. ...|+++|+||+|+.+.
T Consensus 75 ~~~~---a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 75 YYRG---THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred HhCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 4443 899999999875422221 234444433 25899999999998653
No 152
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=1.1e-14 Score=114.59 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=68.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
++|+++|.+|+|||||++++++... .....+....+. ..... ...+.+|||||... +..+...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~--~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF--PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE----------YDRLRPL 68 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC--CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh----------HHHHHHH
Confidence 3799999999999999999998731 111112111121 11111 24588999999532 2222333
Q ss_pred HHhccccccEEEEEEeCCCCCChhHH--HHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
++. .+|++++|+|.++..+.... .++..+.. .+.|+++|+||+|+..
T Consensus 69 ~~~---~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 69 SYP---DVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred hCC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 333 39999999998764333222 24433332 3689999999999864
No 153
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.61 E-value=1.6e-14 Score=114.13 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=67.3
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+|+++|.+|||||||+++|+... . ....++++.+ ......+ ..+.+|||||... +..+...|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-F--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE----------YTALRDQW 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-C--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchh----------hHHHHHHH
Confidence 48999999999999999998763 1 1222222211 1111122 4588999999532 22233344
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh------cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 68 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 68 IRE---GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 443 899999999875432222 234444432 3589999999999864
No 154
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.61 E-value=7.6e-14 Score=113.51 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=61.6
Q ss_pred CeEEEEeCCCCCCc---ccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhcCCcEEEEEecC
Q 026538 138 TKLCLVDLPGYGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT 213 (237)
Q Consensus 138 ~~~~liDTpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~piilv~NK~ 213 (237)
..++++||||+... .........+..++..|+... .+++++|+|+..++...+ ..+.+.+...+.|+++|+||+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~--~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE--ECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc--cCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECC
Confidence 56999999999643 112445566777787887652 469999999987777766 588888888899999999999
Q ss_pred CCCChH
Q 026538 214 DTVFPI 219 (237)
Q Consensus 214 Dl~~~~ 219 (237)
|...+.
T Consensus 203 D~~~~~ 208 (240)
T smart00053 203 DLMDEG 208 (240)
T ss_pred CCCCcc
Confidence 998643
No 155
>PTZ00369 Ras-like protein; Provisional
Probab=99.61 E-value=7.4e-15 Score=115.95 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=70.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.++|+++|.+|||||||++++++........+..+.+... .+......+.+|||||..+ +..+...|+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~~~~~ 74 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE----------YSAMRDQYM 74 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc----------chhhHHHHh
Confidence 4799999999999999999999873211112222222111 1111234578999999653 222333444
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
.. +|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+..
T Consensus 75 ~~---~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 75 RT---GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 43 899999999876432111 233333322 3689999999999854
No 156
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.61 E-value=1.7e-14 Score=114.99 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=72.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--------cCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--------~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
.+|+++|.+|||||||++++++........+..|.+....... ....+.+|||+|... +..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~----------~~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES----------VKST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------HHHH
Confidence 3799999999999999999998742121122222222221111 124588999999532 2344
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----------------------cCCcEEEEEecCCCCCh
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----------------------SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----------------------~~~piilv~NK~Dl~~~ 218 (237)
...|+.. +|++++|+|.+..-+... ..|+..+.. .++|+++|+||+|+.+.
T Consensus 71 ~~~~yr~---ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 71 RAVFYNQ---VNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHhCc---CCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 4455554 999999999876533322 244444432 25899999999999754
No 157
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.61 E-value=1.8e-14 Score=131.44 Aligned_cols=112 Identities=27% Similarity=0.334 Sum_probs=81.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceee----c----------cCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccch
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVR----T----------SDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKE 155 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~----~----------~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~ 155 (237)
.+|+++|+.++|||||+++|+...+... + ....|.|... .+.+.+..+++|||||+.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D----- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD----- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence 4899999999999999999986421110 0 1123444443 3445578899999999743
Q ss_pred HHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
|......++.. +|++++|+|+..+...+...++..+...++|+++|+||+|+..
T Consensus 77 -----F~~ev~~~l~~---aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 77 -----FGGEVERVLGM---VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS 130 (594)
T ss_pred -----HHHHHHHHHHh---CCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC
Confidence 11222233332 9999999999988888888888888888999999999999864
No 158
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.61 E-value=1.3e-14 Score=116.94 Aligned_cols=110 Identities=20% Similarity=0.210 Sum_probs=69.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.+|+++|.+|||||||+|+|++... .....+..+.+... .. ....+.||||||... +..+..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~--~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~----------~~~l~~ 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF--GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI----------GGKMLD 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH----------HHHHHH
Confidence 3799999999999999999998731 11222222223211 11 135688999999531 233444
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc------CCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS------QTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~------~~piilv~NK~Dl~~ 217 (237)
.|+.. +|++++|+|.+..-+... ..++..+... +.|+++|+||+|+..
T Consensus 69 ~~~~~---ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 69 KYIYG---AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 55443 999999999875422222 2344444432 357999999999964
No 159
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=9.6e-15 Score=114.34 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=70.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce-EE----EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QT----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t-~~----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|||||||++++.+... .....+|. .. +........+.+|||||... +..+...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~----------~~~~~~~ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY---PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY----------YDNVRPL 68 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC---CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchh----------hhhcchh
Confidence 4899999999999999999998732 12222221 11 11111235688999999532 2223333
Q ss_pred HHhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
|+.. +|++++|+|.++.-+... ..|+..+.. .+.|+++|+||+|+..
T Consensus 69 ~~~~---a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 69 CYPD---SDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred hcCC---CCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 4433 899999999876543333 245555543 2689999999999853
No 160
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.60 E-value=2.7e-14 Score=111.11 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=69.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.+|+++|.+|||||||++++.+........+..+.. ..+........+.+|||||... +..+...++.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~~~~~~ 72 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE----------FTAMRDQYMR 72 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchh----------hHHHhHHHhh
Confidence 589999999999999999999773211111111111 1111111134688999999532 2334444444
Q ss_pred ccccccEEEEEEeCCCCCChhHH-HHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
. +|++++|+|.++..+.... .+...+.. .++|+++|+||+|+..
T Consensus 73 ~---~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 73 C---GEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred c---CCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 3 8999999998765443332 23333332 3689999999999854
No 161
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.60 E-value=1e-14 Score=111.79 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=68.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-----EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|++|||||||+++++... ......+++.+ .........+.+|||||... +..+...
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED----------YAAIRDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC---CccccCCcchhhEEEEEEECCEEEEEEEEECCChhh----------hhHHHHH
Confidence 389999999999999999999773 22232332221 11111235689999999642 2233334
Q ss_pred HHhccccccEEEEEEeCCCCCChh-HHHHHHHH-H---hcCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLM-E---RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l-~---~~~~piilv~NK~Dl~~ 217 (237)
++.. ++++++++|....-+.. ...+...+ . ..++|+++|+||+|+..
T Consensus 68 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 68 YHRS---GEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 4443 79999999976431111 12222222 2 24799999999999975
No 162
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.60 E-value=1.2e-14 Score=114.11 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=71.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC--ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG--LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g--~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
...+|+++|.+|||||||++++..........+..+ .+..+........+.+|||+|... +..+...|
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~----------~~~~~~~~ 73 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY----------YDNVRPLS 73 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchh----------hHhhhhhh
Confidence 346899999999999999999998732111111111 111111111235689999999532 23333444
Q ss_pred HhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTV 216 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~ 216 (237)
+.. +|++++|+|.+...+... ..|+..+... +.|+++|+||+|+.
T Consensus 74 ~~~---ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 74 YPD---SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 444 899999999876533333 2455555432 68999999999985
No 163
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.60 E-value=1.1e-14 Score=116.09 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=70.8
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCC-CCceEEEE--EEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTIN--FFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~-~g~t~~~~--~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.|+++|..|||||||++++..... .... +..+.+.. ... . ...+.+|||+|... +..+...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f---~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~----------~~~l~~~ 68 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF---CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQER----------FNSITSA 68 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC---CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchh----------hHHHHHH
Confidence 589999999999999999997632 1111 11122221 111 1 36689999999532 3344555
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
|+.. +|++++|+|.++.-+... ..++..+.. .+.|+++|+||+|+...
T Consensus 69 y~~~---ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~ 120 (202)
T cd04120 69 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 120 (202)
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 6655 999999999876433222 234444443 36899999999998643
No 164
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.60 E-value=6.9e-15 Score=134.32 Aligned_cols=124 Identities=24% Similarity=0.232 Sum_probs=83.2
Q ss_pred cCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccc
Q 026538 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL 175 (237)
Q Consensus 99 G~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (237)
|.+|||||||+|+|++.. ..+++.+|+|.+... ...+..+.+|||||..+-..... . +...+.|+.. ..+
T Consensus 1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~---e~v~~~~l~~-~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-E---EEVARDYLLN-EKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch-H---HHHHHHHHhh-cCC
Confidence 899999999999999984 467889999988643 23467799999999754211111 0 1223333332 348
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538 176 KRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV 231 (237)
Q Consensus 176 d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~ 231 (237)
|++++|+|+++. +.......++.+.++|+++|+||+|+.+........+.+.+.
T Consensus 74 DvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~ 127 (591)
T TIGR00437 74 DLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEER 127 (591)
T ss_pred CEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHH
Confidence 999999998752 333445555666789999999999986433332233444443
No 165
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=1.7e-14 Score=117.18 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=72.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC--ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG--LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g--~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
...+|+++|.+|||||||++++++........+..+ .+..+........+.||||+|... +..+...|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~----------~~~~~~~~ 81 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPY----------YDNVRPLC 81 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchh----------hHHHHHHH
Confidence 346899999999999999999997732111111111 111111212246689999999532 23344445
Q ss_pred HhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTV 216 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~ 216 (237)
+.. +|++++|+|.+...+... ..|+..+.. .+.|+++|+||+|+.
T Consensus 82 ~~~---ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 82 YSD---SDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred cCC---CcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 544 999999999876543332 345555543 268999999999985
No 166
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.60 E-value=1.1e-14 Score=117.74 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=74.0
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
...++|+++|.+|||||||+++++.........+..|.+.... +.. ....+.+|||||... +..+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 80 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRD 80 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hhhhhH
Confidence 3557999999999999999999876632222333333332221 111 235789999999642 223334
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
.|+.. ++++++|+|.+...+... ..|+..+.. .+.|+++|+||+|+..
T Consensus 81 ~~~~~---~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 81 GYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred HHccc---ccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 44443 899999999876432222 244444432 3689999999999853
No 167
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.60 E-value=1.1e-14 Score=112.62 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=68.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-EEEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|.+|||||||+++++.........+..+.... ..+.. ....+.+|||||.... ..+...++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF----------GGLRDGYY 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh----------ccccHHHh
Confidence 48999999999999999999866311112222221111 11111 2356899999996431 12222333
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTV 216 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~ 216 (237)
. .+|++++|+|.+...+... ..++..+... ++|+++|+||+|+.
T Consensus 71 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 71 I---GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred c---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 3 2899999999876432222 2344444432 69999999999986
No 168
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.60 E-value=1.7e-14 Score=114.07 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=69.1
Q ss_pred CEEEEecCCCCchhhHHHHHhccccee-eccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~-~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.+|+++|.+|+|||||++++++..... ...+..+.+........ + ..+.+|||||... +..+...+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~ 70 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER----------YEAMSRIY 70 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHhh
Confidence 379999999999999999999874211 11222221111111222 2 4567999999532 12223333
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|.+...+... ..++..+... +.|+++|+||+|+..
T Consensus 71 ~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 71 YRG---AKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 333 899999999875422211 3455555443 689999999999864
No 169
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.60 E-value=7.2e-14 Score=113.35 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=84.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
....|+++|.+|+|||||+|+|++...........|+. .+ ....+..+.++||||.. . .++.
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~--------~----~~l~---- 99 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI--------N----AMID---- 99 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH--------H----HHHH----
Confidence 34578999999999999999999863222333334431 11 22357789999999842 1 1111
Q ss_pred ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEE-EEEecCCCCChH-HHHHHHHHHHHHH
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPI-DVARRAMQIEEVI 232 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~Dl~~~~-~~~~~~~~l~~~l 232 (237)
....+|++++|+|+..++...+..++..+...+.|.+ +|+||+|+.... ......+.+++.+
T Consensus 100 ~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~ 163 (225)
T cd01882 100 IAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRF 163 (225)
T ss_pred HHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHH
Confidence 1123899999999998888888888888887788854 599999998433 3445555555533
No 170
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.60 E-value=1.1e-14 Score=111.92 Aligned_cols=103 Identities=22% Similarity=0.281 Sum_probs=65.3
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
+|+++|.+|+|||||+|+|.+... .. ..|..+.+... .+|||||+.... . +....+.. ...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---~~---~~~~~v~~~~~----~~iDtpG~~~~~--~---~~~~~~~~----~~~ 63 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---LA---RKTQAVEFNDK----GDIDTPGEYFSH--P---RWYHALIT----TLQ 63 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---cC---ccceEEEECCC----CcccCCccccCC--H---HHHHHHHH----HHh
Confidence 799999999999999999998731 11 13333333221 379999974321 1 11122221 123
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.+|++++|+|++.+.+.....+... ..+.|+++++||+|+..
T Consensus 64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD 105 (158)
T ss_pred cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc
Confidence 4999999999886544333333322 13579999999999854
No 171
>PLN03110 Rab GTPase; Provisional
Probab=99.59 E-value=2.7e-14 Score=115.21 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=72.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...+|+++|++|||||||+++|++........+..+......... ....+.||||||... +..+...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~----------~~~~~~~ 80 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----------YRAITSA 80 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHH
Confidence 457999999999999999999998742111112222211111111 134789999999431 2334445
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. ++++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 81 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 81 YYRG---AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred HhCC---CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 5544 899999999875432222 244544443 3689999999999854
No 172
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=4e-14 Score=111.97 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=68.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|||||||++++.+... ......+.+..+. ..... ...+.||||||... +......
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 69 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER----------FRSVTHA 69 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH----------HHHhhHH
Confidence 3799999999999999999998742 1111112111121 11111 35688999999421 2223334
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|.+...+... ..++..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~---ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 70 YYRD---AHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred HccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 4433 899999999875422211 234444433 3689999999999864
No 173
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.59 E-value=5.7e-15 Score=114.63 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=70.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.+.|+++|++|+|||+|+..|........++.. .....+.. .+..+.++|+||+..- .. .+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~~~~~~~~~~~~~~lvD~PGH~rl--r~-------~~~~~- 69 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNIAYNVNNSKGKKLRLVDIPGHPRL--RS-------KLLDE- 69 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEEECCGSSTCGTCECEEEETT-HCC--CH-------HHHHH-
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCceEEeecCCCCEEEEEECCCcHHH--HH-------HHHHh-
Confidence 368999999999999999999987322212221 11111111 2567999999998541 11 12222
Q ss_pred HhccccccEEEEEEeCCCCCChhHHH----HHHHHH-----hcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHE----LISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY 234 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~----~~~~l~-----~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~ 234 (237)
+.....+.+||||+|++. +...-.+ ++..+. ...+|++++.||.|+........+...+++.+..
T Consensus 70 ~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~ 143 (181)
T PF09439_consen 70 LKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDK 143 (181)
T ss_dssp HHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHH
T ss_pred hhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHH
Confidence 111233899999999873 1121122 222221 2468999999999998766666666666666543
No 174
>PLN00023 GTP-binding protein; Provisional
Probab=99.59 E-value=2.5e-14 Score=120.12 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=76.1
Q ss_pred CCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----------------cCCeEEEEeCCCCCC
Q 026538 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----------------LGTKLCLVDLPGYGF 150 (237)
Q Consensus 87 ~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----------------~~~~~~liDTpG~~~ 150 (237)
.+.....+|+++|..|||||||++++++........+..|.+....... ....+.||||+|...
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 3445667999999999999999999998732222222333332221111 124489999999532
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---------------CCcEEEEEecCC
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---------------QTKYQVVLTKTD 214 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---------------~~piilv~NK~D 214 (237)
+..+...|+.. ++++++|+|.+..-+... ..|++.+... ++|+++|+||+|
T Consensus 96 ----------frsL~~~yyr~---AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 96 ----------YKDCRSLFYSQ---INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred ----------hhhhhHHhccC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 33444555554 999999999875322222 3455555432 378999999999
Q ss_pred CCCh
Q 026538 215 TVFP 218 (237)
Q Consensus 215 l~~~ 218 (237)
+...
T Consensus 163 L~~~ 166 (334)
T PLN00023 163 IAPK 166 (334)
T ss_pred cccc
Confidence 9654
No 175
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=1.2e-14 Score=114.88 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=69.6
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
+|+++|.+|||||||++++++........+..+.. ..+........+.+|||||... +..+...++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~l~~~~~~- 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEE----------FDRLRSLSYA- 70 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChh----------cccccccccc-
Confidence 79999999999999999999873211111111111 1111111235689999999632 1122222333
Q ss_pred cccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCChHH
Q 026538 172 RVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~~~ 220 (237)
.+|++++|+|.+..-+... ..++..+.. .+.|+++|+||+|+....+
T Consensus 71 --~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 71 --DTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARN 121 (189)
T ss_pred --CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence 3899999999775422222 235555543 2689999999999975443
No 176
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.59 E-value=1.4e-15 Score=125.24 Aligned_cols=195 Identities=17% Similarity=0.147 Sum_probs=116.6
Q ss_pred ccccccccCCChhhhHHHHHhhcCCCcceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhh-ccCCC
Q 026538 9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAK-VSSSF 87 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (237)
+.+.++++|.-.+..+|..+++..-+..+....++. .++..+..++... ....++.+.-+++.++.+...+ .+..+
T Consensus 97 a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~--v~gsges~id~d~-~rllr~kea~lrKeL~~vrrkr~~r~gr 173 (410)
T KOG0410|consen 97 AVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQ--VKGSGESIIDRDI-RRLLRIKEAQLRKELQRVRRKRQRRVGR 173 (410)
T ss_pred hhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCc--ccCccchHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 345566788888888888888777666655555332 2232222211111 0111222222333333333333 22344
Q ss_pred CCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE----EEEcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (237)
Q Consensus 88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~----~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (237)
.....|.|+++|++|||||||+++|++.. ....+.-..|.|.. ....|..+.+.||-||... ....
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aa--l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd--------LP~~ 243 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAA--LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD--------LPIQ 243 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhh--cCccchhheeccchhhhccCCCCcEEEEeechhhhhh--------CcHH
Confidence 44677999999999999999999999652 22333334444443 3345788999999998542 2233
Q ss_pred HHHHHH---hccccccEEEEEEeCCCCCChhH-HHHHHHHHhcCCc-------EEEEEecCCCC
Q 026538 164 LVKEYV---STRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTK-------YQVVLTKTDTV 216 (237)
Q Consensus 164 ~~~~~~---~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p-------iilv~NK~Dl~ 216 (237)
++.+|. ....++|+++.|+|.+++..+.. ..++..+...++| ++-|.||+|..
T Consensus 244 LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 244 LVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred HHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 333332 23334899999999998754443 5566777776664 67799999975
No 177
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.59 E-value=1.9e-14 Score=110.56 Aligned_cols=109 Identities=12% Similarity=0.064 Sum_probs=67.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|+|||||+++++.... . ....++..+. ..... ...+.+|||||... +..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF-I--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ----------FASMRDL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-C--CCCCCchhheEEEEEEECCEEEEEEEEECCCccc----------ccchHHH
Confidence 5899999999999999999997732 1 1112222111 11111 23578999999532 1222333
Q ss_pred HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
|+.. +|++++|+|.++.-+-. ...++..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 69 YIKN---GQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 3333 89999999987542211 1333333332 4689999999999864
No 178
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.59 E-value=1.2e-14 Score=115.68 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=67.2
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+|+++|.+|||||||++++++... ......++.+ ..+...+ ..+.+|||||... +..+...+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF---EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS----------FPAMRKLS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC---CccCCCchhhheeEEEEECCEEEEEEEEECCCchh----------hhHHHHHH
Confidence 589999999999999999998732 1222222211 1122223 4688999999643 12222233
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|.++..+... ..++..+. ..++|+++|+||+|+..
T Consensus 68 ~~~---ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 68 IQN---SDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 333 899999999875422222 22222222 24689999999999865
No 179
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.59 E-value=1.6e-14 Score=114.14 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...+|+++|..|||||||+.++..........+..+.... +.+......+.+|||||... +..+...
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~----------~~~l~~~ 74 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR----------FCTIFRS 74 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHHHH
Confidence 3479999999999999999999976321111122221111 11111235688999999532 3344445
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
|+.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 75 ~~~~---ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 75 YSRG---AQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 5543 999999999876433222 345555543 3689999999999853
No 180
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.59 E-value=4.7e-14 Score=107.72 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=68.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|+|||||+|+|++.. ... ...+.++.... +.. ....+.+|||||... +..+...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~ 68 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENK-FNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER----------YHALGPI 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHH----------HHHhhHH
Confidence 379999999999999999999873 221 12222212211 111 134588999999421 2233333
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
++.. +|++++|+|.++.-.... ..++..+.. .++|+++|+||+|+...
T Consensus 69 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~ 120 (162)
T cd04123 69 YYRD---ADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120 (162)
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 4433 899999999875422221 233333332 26899999999998743
No 181
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.59 E-value=2.4e-14 Score=106.56 Aligned_cols=113 Identities=22% Similarity=0.212 Sum_probs=74.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCC-CCCcccchHHHHHHHHHHHHHHhc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG-YGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
.+|+++|++|||||||+++|.+.+ . ....|+.+.+. =.+||||| |.+. ..+....+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~--~----~~~KTq~i~~~-----~~~IDTPGEyiE~----------~~~y~aLi~t 60 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE--I----RYKKTQAIEYY-----DNTIDTPGEYIEN----------PRFYHALIVT 60 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC--C----CcCccceeEec-----ccEEECChhheeC----------HHHHHHHHHH
Confidence 489999999999999999999873 1 12245555544 13499999 3321 1233333344
Q ss_pred cccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC-ChHHHHHHHHHHH
Q 026538 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIE 229 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~-~~~~~~~~~~~l~ 229 (237)
..++|+|++|.|+..+...-...+.. ..+.|+|-|+||+|+. +..++.+..+.++
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa~---~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~ 116 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFAS---MFNKPVIGVITKIDLPSDDANIERAKKWLK 116 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhhc---ccCCCEEEEEECccCccchhhHHHHHHHHH
Confidence 44599999999988654333333332 2368999999999998 4555555554444
No 182
>PRK10218 GTP-binding protein; Provisional
Probab=99.58 E-value=4.6e-14 Score=128.73 Aligned_cols=128 Identities=21% Similarity=0.201 Sum_probs=87.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee--------------ccCCCCceEEEE---EEEcCCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--------------TSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~--------------~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~ 153 (237)
...+|+++|+.++|||||+++|+...+... .....|.|.... +.+.+..+++|||||+.+-
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df-- 81 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF-- 81 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh--
Confidence 456999999999999999999996421110 011234554432 3334778999999997541
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
......++.. +|++++|+|+..+.......++..+...++|+++|+||+|+... .....++++.+.+
T Consensus 82 --------~~~v~~~l~~---aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a-~~~~vl~ei~~l~ 148 (607)
T PRK10218 82 --------GGEVERVMSM---VDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGA-RPDWVVDQVFDLF 148 (607)
T ss_pred --------HHHHHHHHHh---CCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCC-chhHHHHHHHHHH
Confidence 1222233332 99999999999888888888888888889999999999998642 2233344444443
No 183
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=4.7e-14 Score=108.36 Aligned_cols=115 Identities=20% Similarity=0.235 Sum_probs=80.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE-----E--EcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-----F--KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~-----~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
..+|+++|..+|||||||++++-... ......|..+.| + ....++.+|||+|. +.|..+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~f----d~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ----------ERFrsl 87 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKF----DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSL 87 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhh----cccccceeeeEEEEEEEEEcCcEEEEEEEecccH----------HHHhhh
Confidence 36999999999999999999987631 111122222221 1 12567899999993 457788
Q ss_pred HHHHHhccccccEEEEEEeCCCCCC-hhHHHHHHHHHhc----CCcEEEEEecCCCCChHHHHH
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS----QTKYQVVLTKTDTVFPIDVAR 223 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~-~~~~~~~~~l~~~----~~piilv~NK~Dl~~~~~~~~ 223 (237)
+..|++. +.++++|+|..+.-+ +....|++.+... ++-+++|+||.||.++.++..
T Consensus 88 ipsY~Rd---s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~ 148 (221)
T KOG0094|consen 88 IPSYIRD---SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSI 148 (221)
T ss_pred hhhhccC---CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhH
Confidence 8999887 899999999765332 2335566665543 355788999999998876543
No 184
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.58 E-value=1e-14 Score=112.63 Aligned_cols=112 Identities=17% Similarity=0.047 Sum_probs=69.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-----EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
++|+++|.+|||||||+++|++... .....+ +..+ .........+.+|||||.... ..+...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~----------~~~~~~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF--PTEYVP-TVFDNYSATVTVDGKQVNLGLWDTAGQEEY----------DRLRPL 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCC-ceeeeeEEEEEECCEEEEEEEEeCCCcccc----------cccchh
Confidence 4899999999999999999998832 111111 1111 111112346899999997531 111111
Q ss_pred HHhccccccEEEEEEeCCCCCC--hhHHHHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~ 220 (237)
++ ..+|++++|+|+....+ .....++..+... +.|+++|+||+|+.....
T Consensus 68 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 68 SY---PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred hc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 22 23899999999875322 2223345544433 599999999999976553
No 185
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.58 E-value=4.3e-14 Score=114.11 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=68.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE-EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
.+|+++|.+|||||||+++++... ... ..+....+.... .....+.+|||||... +..+...|+..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~-f~~--~~~Tig~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~~~ 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERR-FKD--TVSTVGGAFYLKQWGPYNISIWDTAGREQ----------FHGLGSMYCRG 67 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC-CCC--CCCccceEEEEEEeeEEEEEEEeCCCccc----------chhhHHHHhcc
Confidence 379999999999999999999873 221 122111122111 1245689999999643 12233344443
Q ss_pred cccccEEEEEEeCCCCCChhH--HHHHHHHH--hcCCcEEEEEecCCCCC
Q 026538 172 RVSLKRVCLLIDTKWGVKPRD--HELISLME--RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~--~~~~piilv~NK~Dl~~ 217 (237)
+|++++|+|.++..+... ..+..... ..+.|+++|+||+|+..
T Consensus 68 ---ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 68 ---AAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 999999999876432222 22222222 23589999999999865
No 186
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.58 E-value=3.3e-14 Score=129.90 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=76.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccce-------eecc------CCCCceEEEE---EEE---c--CCeEEEEeCCCCCC
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-------VRTS------DKPGLTQTIN---FFK---L--GTKLCLVDLPGYGF 150 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~-------~~~~------~~~g~t~~~~---~~~---~--~~~~~liDTpG~~~ 150 (237)
..+|+++|+.++|||||+++|+...+. .... ...|.|.... +.+ . ...+.||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 459999999999999999999875211 0111 1235554432 211 1 25689999999753
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
+......++.. +|++++|+|++.+.+......+..+...++|+++|+||+|+..
T Consensus 83 ----------F~~~v~~~l~~---aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 83 ----------FSYEVSRSLAA---CEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred ----------HHHHHHHHHHh---CCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc
Confidence 12223333333 9999999999988777665555555556899999999999864
No 187
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.58 E-value=3.5e-14 Score=115.73 Aligned_cols=85 Identities=24% Similarity=0.235 Sum_probs=58.4
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
+|+++|.+|+|||||+|+|++.. ..+...+++|.+... ...+..+.+|||||+.+..... ..+......
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~ 73 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG------KGRGRQVIA 73 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc------hhHHHHHHH
Confidence 68999999999999999999984 446667777765432 2347789999999975421111 011122222
Q ss_pred ccccccEEEEEEeCCC
Q 026538 171 TRVSLKRVCLLIDTKW 186 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~ 186 (237)
....+|++++|+|+++
T Consensus 74 ~~~~ad~il~V~D~t~ 89 (233)
T cd01896 74 VARTADLILMVLDATK 89 (233)
T ss_pred hhccCCEEEEEecCCc
Confidence 3344999999999764
No 188
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.58 E-value=3.9e-14 Score=130.91 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=82.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeec----------cCCC----------------------CceEEEEE---EE
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT----------SDKP----------------------GLTQTINF---FK 135 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~----------~~~~----------------------g~t~~~~~---~~ 135 (237)
..++|+++|++|+|||||+|+|+...+ .+. +... |.|.+..+ ..
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSK-MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 446899999999999999999997532 111 1122 33444322 22
Q ss_pred cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC-CcEEEEEecCC
Q 026538 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTD 214 (237)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~D 214 (237)
.+..+.++||||+.+ +..........+|++++|+|+..++..++.+.+..+...+ .|+++|+||+|
T Consensus 102 ~~~~~~liDtPG~~~-------------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHEQ-------------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChHH-------------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence 356799999999632 1222222334499999999999888777776666666665 46888999999
Q ss_pred CCC--hHHHHHHHHHHHH
Q 026538 215 TVF--PIDVARRAMQIEE 230 (237)
Q Consensus 215 l~~--~~~~~~~~~~l~~ 230 (237)
+.+ .+......+++.+
T Consensus 169 ~~~~~~~~~~~i~~~i~~ 186 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRA 186 (632)
T ss_pred cccchhHHHHHHHHHHHH
Confidence 974 3323344444443
No 189
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=3.1e-14 Score=109.87 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.++|+++|.+|||||||++++.+.. ......+..+.+. .+...+ ..+.+|||||... +.....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~ 74 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----------FRSITQ 74 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence 4799999999999999999998662 1111122222222 112223 4578999999532 222333
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCChH
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~~~ 219 (237)
.++.. +|++++|+|.+...+... ..++..+. ..+.|+++|+||+|+....
T Consensus 75 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 75 SYYRS---ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR 128 (169)
T ss_pred HHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 44443 899999999875422211 23333333 3468999999999987543
No 190
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.58 E-value=4.9e-14 Score=124.68 Aligned_cols=129 Identities=21% Similarity=0.329 Sum_probs=82.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee-----------------------------ccCCCCceEEEEEEE---cCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----------------------------TSDKPGLTQTINFFK---LGT 138 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-----------------------------~~~~~g~t~~~~~~~---~~~ 138 (237)
...+|+++|+.++|||||+++|+...+... .....|+|.+..... .+.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 456999999999999999999985321000 011346777764433 367
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC---CChhHHHHHHHHHhcC-CcEEEEEecCC
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHELISLMERSQ-TKYQVVLTKTD 214 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~---~~~~~~~~~~~l~~~~-~piilv~NK~D 214 (237)
.+.+|||||+.+ +...+......+|++++|+|++.+ ......+.+..+...+ .|+++|+||+|
T Consensus 86 ~i~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~D 152 (426)
T TIGR00483 86 EVTIVDCPGHRD-------------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMD 152 (426)
T ss_pred EEEEEECCCHHH-------------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChh
Confidence 899999999631 223333333459999999999876 4344444444444444 46899999999
Q ss_pred CCC--hHHHHHHHHHHHHHH
Q 026538 215 TVF--PIDVARRAMQIEEVI 232 (237)
Q Consensus 215 l~~--~~~~~~~~~~l~~~l 232 (237)
+.. .+......+++++.+
T Consensus 153 l~~~~~~~~~~~~~ei~~~~ 172 (426)
T TIGR00483 153 SVNYDEEEFEAIKKEVSNLI 172 (426)
T ss_pred ccCccHHHHHHHHHHHHHHH
Confidence 974 333334444444433
No 191
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=2.2e-14 Score=113.01 Aligned_cols=112 Identities=22% Similarity=0.184 Sum_probs=69.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
++|+++|.+|||||||++++++........+..+.+........ ...+.+|||||... +......++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER----------FRSLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHhhHHHHc
Confidence 47999999999999999999987321112222222222221221 34578999999532 122333333
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
.. +|++++|+|.++.-+... ..++..+.. ...|+++|+||+|+..
T Consensus 71 ~~---~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 71 RG---AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred cC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 33 999999999875422111 234444433 2579999999999874
No 192
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.58 E-value=2.9e-14 Score=110.60 Aligned_cols=113 Identities=17% Similarity=0.065 Sum_probs=69.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE---EEE-EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TIN-FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~---~~~-~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
+.++|+++|.+|||||||++++++... . .....+|+. ... +...+ ..+.+|||+|.... ..+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f-~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~ 70 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSF-S-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA----------ILL 70 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCC-C-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc----------ccc
Confidence 457999999999999999999998732 1 122222221 111 11123 45789999995431 112
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH-hcCCcEEEEEecCCCCCh
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-~~~~piilv~NK~Dl~~~ 218 (237)
...|+. .+|++++|+|+++..+... ..+++.+. ..++|+++|+||+|+.+.
T Consensus 71 ~~~~~~---~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 71 NDAELA---ACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred chhhhh---cCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccc
Confidence 222332 2999999999875422111 13333332 236899999999998643
No 193
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.58 E-value=5.1e-14 Score=126.84 Aligned_cols=129 Identities=22% Similarity=0.258 Sum_probs=86.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccce-e---ec----------cC------CCCceEE---EEEEEcCCeEEEEeCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V---RT----------SD------KPGLTQT---INFFKLGTKLCLVDLPG 147 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~-~---~~----------~~------~~g~t~~---~~~~~~~~~~~liDTpG 147 (237)
...+|+++|++|+|||||+++|+...+. . .+ ++ ..|.+.. ..+.+.+..+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 3469999999999999999999742110 0 00 11 0112211 23444578899999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHH
Q 026538 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 227 (237)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~ 227 (237)
+.+ +......++. .+|++++|+|+..++......+++.+...++|+++++||+|+.... ..+.++.
T Consensus 89 ~~d----------f~~~~~~~l~---~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~-~~~~l~~ 154 (526)
T PRK00741 89 HED----------FSEDTYRTLT---AVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGRE-PLELLDE 154 (526)
T ss_pred chh----------hHHHHHHHHH---HCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccC-HHHHHHH
Confidence 743 1111122222 2999999999998887777788888888899999999999986433 3355566
Q ss_pred HHHHHH
Q 026538 228 IEEVIF 233 (237)
Q Consensus 228 l~~~l~ 233 (237)
+++.++
T Consensus 155 i~~~l~ 160 (526)
T PRK00741 155 IEEVLG 160 (526)
T ss_pred HHHHhC
Confidence 666554
No 194
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.57 E-value=3.2e-14 Score=111.12 Aligned_cols=112 Identities=15% Similarity=0.000 Sum_probs=72.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE--EEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~--~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.+|+++|.+|+|||||+.++..........+..+.+. .+........+.+|||+|... +..+...|+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~----------~~~~~~~~~~ 71 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED----------YNRLRPLSYR 71 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc----------ccccchhhcC
Confidence 5899999999999999999997732111112111111 111111236689999999643 2223334444
Q ss_pred ccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
. ++++++|+|.++.-+... ..|+..+.. .+.|+++|+||+|+.+
T Consensus 72 ~---a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 72 G---ADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred C---CcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 3 899999999876544433 245665543 3689999999999954
No 195
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.57 E-value=3.9e-14 Score=110.43 Aligned_cols=112 Identities=14% Similarity=-0.015 Sum_probs=68.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCc--eEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~--t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.+|+++|.+|||||||+.+++.........+..+. ...+........+.+|||||... +..+...++.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~ 71 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRLRPLSYP 71 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhhhcC
Confidence 48999999999999999999876321111111111 11111111135688999999532 1222333443
Q ss_pred ccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
.+|++++|+|.++.-+... ..++..+.. .+.|+++|+||+|+.+
T Consensus 72 ---~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 72 ---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 3899999999876433222 234444433 2689999999999864
No 196
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.57 E-value=1.5e-14 Score=111.80 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=68.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
++|+++|.+|||||||++++.+........+..+.. ..+........+.+|||||... +..+.+.++.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~ 71 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ----------FTAMRELYIK 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCccc----------chhhhHHHHh
Confidence 489999999999999999999773211111111111 1111111235688999999643 2233344444
Q ss_pred ccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~ 218 (237)
. ++++++|+|.+..-+-.. ..+...+. ..+.|+++|+||+|+...
T Consensus 72 ~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 72 S---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred h---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 3 899999999775321111 22333332 236899999999998643
No 197
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.57 E-value=1.6e-14 Score=112.14 Aligned_cols=108 Identities=16% Similarity=0.064 Sum_probs=66.7
Q ss_pred EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
|+++|.+|||||||++++++... .....+...... ..... ...+.+|||||.... ..+...++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~ 68 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY----------DRLRPLSYP 68 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc----------chhchhhcC
Confidence 58999999999999999998731 111112111111 11111 245889999996431 112222232
Q ss_pred ccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
.+|++++|+|.++.-+... ..++..+.. .+.|+++|+||+|+..
T Consensus 69 ---~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 69 ---DTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 3899999999875422222 234555543 3799999999999865
No 198
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.57 E-value=4.4e-14 Score=124.08 Aligned_cols=127 Identities=22% Similarity=0.313 Sum_probs=81.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceee--ccCCCCceEEEEEEE-----------------------------cCCeE
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGLTQTINFFK-----------------------------LGTKL 140 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~--~~~~~g~t~~~~~~~-----------------------------~~~~~ 140 (237)
..+|+++|..++|||||+++|.+.. ... .....|.|.++.+.. .+..+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~-~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVW-TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCee-cccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4689999999999999999997641 100 011123333322100 13579
Q ss_pred EEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCC-cEEEEEecCCCCCh
Q 026538 141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFP 218 (237)
Q Consensus 141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~ 218 (237)
.+|||||+.+ +...++.....+|++++|+|+..+. ..+..+.+..+...++ |+++|+||+|+.+.
T Consensus 83 ~liDtPGh~~-------------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHET-------------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHHH-------------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 9999999632 2223333333489999999999876 5666666666666654 58999999999876
Q ss_pred HHHHHHHHHHHHHH
Q 026538 219 IDVARRAMQIEEVI 232 (237)
Q Consensus 219 ~~~~~~~~~l~~~l 232 (237)
+......+++.+.+
T Consensus 150 ~~~~~~~~~i~~~l 163 (406)
T TIGR03680 150 EKALENYEEIKEFV 163 (406)
T ss_pred HHHHHHHHHHHhhh
Confidence 55544444444433
No 199
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.57 E-value=1.8e-14 Score=118.46 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=87.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE----EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...|.++|.||+|||||+|+|.... ..+.+++.||....+ +.....+.+-|.||+....... +.+-..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n------kGlG~~ 267 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN------KGLGYK 267 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCcccccccccc------CcccHH
Confidence 4578899999999999999999984 578889999876533 2233449999999987643222 123345
Q ss_pred HHhccccccEEEEEEeCCCCCChhH----HHHHHHHHh-----cCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD----HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~----~~~~~~l~~-----~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
|++..+.|+.++||+|.+....... ..+..++.. ...|.++|+||+|+.+.+ ...+..+.+.++
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq 340 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQ 340 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcC
Confidence 5566666999999999875421111 222223322 267999999999986322 233455555443
No 200
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.56 E-value=6e-14 Score=126.44 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=84.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccccee-e---c----------cC------CCCceEE---EEEEEcCCeEEEEeCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-R---T----------SD------KPGLTQT---INFFKLGTKLCLVDLPG 147 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~-~---~----------~~------~~g~t~~---~~~~~~~~~~~liDTpG 147 (237)
...+|+++|++++|||||+++|+...+.. . + ++ ..|.+.. ..+.+.+..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 34699999999999999999986421110 0 1 00 1122222 23344578899999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHH
Q 026538 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 227 (237)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~ 227 (237)
+.+ . ......++ ..+|++++|+|+..++......+++.+...++|+++++||+|+... +..+.++.
T Consensus 90 ~~d------f----~~~~~~~l---~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~-~~~~ll~~ 155 (527)
T TIGR00503 90 HED------F----SEDTYRTL---TAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR-DPLELLDE 155 (527)
T ss_pred hhh------H----HHHHHHHH---HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC-CHHHHHHH
Confidence 742 1 11111122 2399999999999888777777888777788999999999998632 23345555
Q ss_pred HHHHHH
Q 026538 228 IEEVIF 233 (237)
Q Consensus 228 l~~~l~ 233 (237)
+++.++
T Consensus 156 i~~~l~ 161 (527)
T TIGR00503 156 VENELK 161 (527)
T ss_pred HHHHhC
Confidence 555544
No 201
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.56 E-value=7.9e-14 Score=122.45 Aligned_cols=111 Identities=17% Similarity=0.224 Sum_probs=77.0
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeec-------------------------------cCCCCceEEEEEEE---cCCe
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRT-------------------------------SDKPGLTQTINFFK---LGTK 139 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~-------------------------------~~~~g~t~~~~~~~---~~~~ 139 (237)
+|+++|+.++|||||+++|+...+.... ....|.|.+..+.. .+..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999999999754211100 01233455553322 3667
Q ss_pred EEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCC
Q 026538 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF 217 (237)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~ 217 (237)
+.++||||+.+ +..........+|++++|+|+..++..++.+.+..+...++| +++|+||+|+..
T Consensus 82 ~~liDtPGh~~-------------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 82 FIVADTPGHEQ-------------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEeCCCHHH-------------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 99999999632 222222233449999999999998888887777777666654 888999999975
No 202
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.56 E-value=6.4e-14 Score=113.23 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=69.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.+|+++|.+|||||||++++.+........+..+.. ..+........+.||||+|... +..+...++.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~----------~~~l~~~~~~ 71 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSY----------YDNVRPLAYP 71 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHH----------HHHHhHHhcc
Confidence 489999999999999999999873211111111111 1112211245688999999532 2233333443
Q ss_pred ccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
. +|++++|+|.+..-+... ..|...+.. .+.|+++|+||+|+..
T Consensus 72 ~---~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 72 D---SDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred C---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 3 999999999876422222 223333332 3689999999999864
No 203
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.56 E-value=9.5e-14 Score=106.75 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=68.5
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+|+++|++|+|||||++++++... . ....+....+. .... . ...+.+|||||... +..+...+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~ 69 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF-H-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER----------YQTITKQY 69 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-C-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh----------HHhhHHHH
Confidence 799999999999999999998732 1 11222222221 1111 1 24678999999532 22334444
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
+.. +|++++|+|.+..-+... ..++..+.. .+.|+++|+||+|+...
T Consensus 70 ~~~---~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 70 YRR---AQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120 (161)
T ss_pred hcC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 443 899999999875322211 234443332 35899999999998643
No 204
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.56 E-value=9.9e-14 Score=123.83 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=76.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeec-------------c------------------CCCCceEEEEEE---Ec
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------------S------------------DKPGLTQTINFF---KL 136 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~-------------~------------------~~~g~t~~~~~~---~~ 136 (237)
..++|+++|+.++|||||+++|+...+.... + ...|.|.+..+. ..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 4579999999999999999999865321100 0 012345554322 23
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC-CcEEEEEecCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDT 215 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~Dl 215 (237)
+..+.+|||||+.+ +..........+|++++|+|+..++...+.+.+..+...+ .|+++|+||+|+
T Consensus 106 ~~~i~~iDTPGh~~-------------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~ 172 (474)
T PRK05124 106 KRKFIIADTPGHEQ-------------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDL 172 (474)
T ss_pred CcEEEEEECCCcHH-------------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecc
Confidence 56899999999632 1112222234499999999999888776665555555555 468899999999
Q ss_pred CC
Q 026538 216 VF 217 (237)
Q Consensus 216 ~~ 217 (237)
..
T Consensus 173 ~~ 174 (474)
T PRK05124 173 VD 174 (474)
T ss_pred cc
Confidence 74
No 205
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.56 E-value=4.4e-14 Score=110.36 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=66.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCc-----eEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-----TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~-----t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|+|||||++++++... .....++ +........+..+.+|||||..+ +..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF---VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE----------YSILPQK 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---ccccCcchhhhEEEEEEECCEEEEEEEEECCChHh----------hHHHHHH
Confidence 4899999999999999999997731 2212222 22222221235678999999642 1122222
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~ 217 (237)
++.. ++++++++|.+...+... ..++..+. ..+.|+++|+||+|+..
T Consensus 69 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 69 YSIG---IHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 3322 899999999875322111 12222222 24679999999999864
No 206
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.56 E-value=6.2e-14 Score=110.96 Aligned_cols=113 Identities=13% Similarity=-0.030 Sum_probs=69.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE--EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~--~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.+|+++|..|||||||++++..........+..+.... +........+.+|||||... +..+...|+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~l~~~~~~ 73 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE----------YDRLRTLSYP 73 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhhhcc
Confidence 58999999999999999999976321111111111111 11111135688999999532 2334444544
Q ss_pred ccccccEEEEEEeCCCCCChhHH--HHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~piilv~NK~Dl~~~ 218 (237)
. +|++++|+|..+.-+.... .+...+.. .++|+++|+||+|+...
T Consensus 74 ~---a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 74 Q---TNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND 122 (191)
T ss_pred C---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC
Confidence 4 9999999998754322222 24443432 36899999999998643
No 207
>PTZ00416 elongation factor 2; Provisional
Probab=99.56 E-value=8.6e-14 Score=131.82 Aligned_cols=112 Identities=16% Similarity=0.240 Sum_probs=81.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC---------------ceEEE---EEEEc----------CCeEEE
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---------------LTQTI---NFFKL----------GTKLCL 142 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g---------------~t~~~---~~~~~----------~~~~~l 142 (237)
...+|+++|+.++|||||+++|+...+. ......| .|.+. .+.+. +..+++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGI-ISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCC-cccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4569999999999999999999975321 1111222 22221 11111 456899
Q ss_pred EeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 143 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+||||+.+ +..........+|++++|+|+..++...+..+++.+...++|+++++||+|+.
T Consensus 97 iDtPG~~~-------------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHh-------------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 99999753 22223333444999999999999999999999999988899999999999986
No 208
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.55 E-value=6.2e-14 Score=112.70 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=68.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEE--c--CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK--L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~--~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
++|+++|.+|||||||+++|++.. ..... .+....+.. ... . ...+.+|||||... +..+..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~-~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR-FAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER----------FRSITR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcchh----------HHHHHH
Confidence 689999999999999999999873 22221 122212211 111 1 24688999999532 233444
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
.|+.. +|++++|+|.++.-+... ..++..+.. ...|+++|+||+|+..
T Consensus 71 ~~~~~---~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 71 SYYRN---SVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred HHhcC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 55544 899999999875422111 233443332 2467899999999865
No 209
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.55 E-value=7.3e-14 Score=106.44 Aligned_cols=108 Identities=13% Similarity=0.078 Sum_probs=67.6
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+|+++|++|||||||++++++.. ......+++.+. .+... ...+.+||+||... +..+...+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAMRDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence 58999999999999999999873 223333333221 11112 35688999999542 22223333
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|.....+... ..+...+.. ...|+++|+||+|+..
T Consensus 68 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 68 IRQ---GDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred Hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 333 899999999875322111 222222221 3689999999999875
No 210
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.55 E-value=8e-14 Score=122.50 Aligned_cols=128 Identities=23% Similarity=0.314 Sum_probs=84.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEE-----------------------------cCCeE
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK-----------------------------LGTKL 140 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~-----------------------------~~~~~ 140 (237)
...+|+++|+.++|||||+.+|.+.. +........|.|.++.+.. ....+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 44699999999999999999997641 0001111244554432210 02468
Q ss_pred EEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCC-cEEEEEecCCCCCh
Q 026538 141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFP 218 (237)
Q Consensus 141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~ 218 (237)
.+|||||+. .+...++.....+|++++|+|+..+. .......+..+...+. |+++|+||+|+.+.
T Consensus 88 ~liDtPG~~-------------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 88 SFVDAPGHE-------------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK 154 (411)
T ss_pred EEEECCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc
Confidence 999999952 34445555555689999999999876 5666666666666655 68999999999876
Q ss_pred HHHHHHHHHHHHH
Q 026538 219 IDVARRAMQIEEV 231 (237)
Q Consensus 219 ~~~~~~~~~l~~~ 231 (237)
.+.....+.+.+.
T Consensus 155 ~~~~~~~~~i~~~ 167 (411)
T PRK04000 155 ERALENYEQIKEF 167 (411)
T ss_pred hhHHHHHHHHHHH
Confidence 5544444444443
No 211
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=9.4e-15 Score=111.99 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=79.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCC---CCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~---~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..+|+++|.+|||||||+-++..........+. ...|+.+.......++.||||+|... +..+...|
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER----------y~slapMY 74 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER----------YHSLAPMY 74 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccc----------ccccccce
Confidence 469999999999999999998876322211222 22444444444457788999999642 55677778
Q ss_pred HhccccccEEEEEEeCCCCCCh-hHHHHHHHHHhcC---CcEEEEEecCCCCChH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERSQ---TKYQVVLTKTDTVFPI 219 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~~---~piilv~NK~Dl~~~~ 219 (237)
++. ++++++|+|..+.-+. .-..|++.+.+.. +-+.+|+||+|+....
T Consensus 75 yRg---A~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R 126 (200)
T KOG0092|consen 75 YRG---ANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR 126 (200)
T ss_pred ecC---CcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc
Confidence 877 9999999998753222 2246677776543 3366799999998643
No 212
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.55 E-value=3.9e-13 Score=121.08 Aligned_cols=126 Identities=20% Similarity=0.199 Sum_probs=82.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCC-CCceEEEEEE--EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~-~g~t~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
-..+|+++|.+|+||||++|+|++.. ...++.. ++||+..... ..+..+.+|||||+.++.........+...+..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGek-vf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEV-KFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccc-cccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 34689999999999999999999984 3444444 5566543332 347889999999998753332222222333334
Q ss_pred HHhccccccEEEEEEeCCC-CCChhHHHHHHHHHh-----cCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMER-----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~ 218 (237)
++... .+|+|+||+.... .....+..+++.+.. ....+|||+|++|..++
T Consensus 196 ~Lsk~-gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKKN-PPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhcC-CCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 44432 3788888876432 222345556666643 24679999999999864
No 213
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.55 E-value=1e-13 Score=126.75 Aligned_cols=114 Identities=19% Similarity=0.224 Sum_probs=77.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccccee-------ecc------CCCCceEEE---EEEEc-----CCeEEEEeCCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTI---NFFKL-----GTKLCLVDLPGYG 149 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~-------~~~------~~~g~t~~~---~~~~~-----~~~~~liDTpG~~ 149 (237)
...+++++|+.++|||||+.+|+...+.. ... ...|.|... .+.+. +..++||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45699999999999999999998642110 010 123444332 12111 4678999999975
Q ss_pred CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
+ +......++.. +|++++|+|++.+.+..+...+..+...++|+++|+||+|+..
T Consensus 86 d----------F~~~v~~sl~~---aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 86 D----------FSYEVSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred H----------HHHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc
Confidence 4 11222333333 8999999999988877776666666667899999999999864
No 214
>PRK13351 elongation factor G; Reviewed
Probab=99.55 E-value=9.1e-14 Score=129.72 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=90.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccccee-e---------ccC------CCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-R---------TSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~-~---------~~~------~~g~t~~~---~~~~~~~~~~liDTpG~~~ 150 (237)
....+|+++|..|+|||||+++|+...+.. . ..+ ..+.|... .+.+.+..+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 355799999999999999999998542110 0 010 12333322 3334577899999999753
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
+......++.. +|++++|+|+..+........+..+...++|+++|+||+|+... +....++.+++
T Consensus 86 ----------f~~~~~~~l~~---aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~ 151 (687)
T PRK13351 86 ----------FTGEVERSLRV---LDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA-DLFKVLEDIEE 151 (687)
T ss_pred ----------HHHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC-CHHHHHHHHHH
Confidence 11122223332 89999999999888777777888888889999999999998754 45666677776
Q ss_pred HHHh
Q 026538 231 VIFY 234 (237)
Q Consensus 231 ~l~~ 234 (237)
.++.
T Consensus 152 ~l~~ 155 (687)
T PRK13351 152 RFGK 155 (687)
T ss_pred HHCC
Confidence 6553
No 215
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.6e-14 Score=108.73 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=79.8
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE-------EEcCCeEEEEeCCCCCCcccchHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~-------~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 162 (237)
+..++|+++|.+|||||+++-++.... .... ...|..+.+ ......+.+|||+|.. .+.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~---f~~~-~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQe----------rf~ 75 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDS---FNTS-FISTIGIDFKIKTIELDGKKIKLQIWDTAGQE----------RFR 75 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhcc---CcCC-ccceEEEEEEEEEEEeCCeEEEEEEEEcccch----------hHH
Confidence 456899999999999999999998773 1111 112332222 1124568999999943 356
Q ss_pred HHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCChHH
Q 026538 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~~~~ 220 (237)
.+...|++. |+++++|+|.....+... ..|++.+..+ ++|.++|+||+|+....+
T Consensus 76 ti~~sYyrg---A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~ 134 (207)
T KOG0078|consen 76 TITTAYYRG---AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQ 134 (207)
T ss_pred HHHHHHHhh---cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccccc
Confidence 778888877 999999999765433222 3466666543 789999999999976443
No 216
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.54 E-value=9.8e-14 Score=109.00 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=66.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|.+|||||||++++++........+..|......... . ...+.+|||+|... +..+...++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~----------~~~~~~~~~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE----------FINMLPLVC 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchh----------HHHhhHHHC
Confidence 3799999999999999999988732111122222111111111 1 25689999999532 223333444
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTV 216 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~ 216 (237)
.. +|++++|+|.++..+... ..++..+.. ...| ++|+||+|+.
T Consensus 71 ~~---a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 71 ND---AVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred cC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 33 999999999876433222 234444443 2355 6889999986
No 217
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.54 E-value=4.3e-14 Score=109.69 Aligned_cols=110 Identities=14% Similarity=0.027 Sum_probs=67.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|++|+|||||++++.+... .....++..+. .+.. ....+.+|||||.... ..+...
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 67 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DRLRPL 67 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc----------cccccc
Confidence 3799999999999999999998732 12222222211 1111 1344789999996431 111111
Q ss_pred HHhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~ 218 (237)
++ ..+|++++|+|..+.-+... ..++..+.. .+.|+++|+||+|+.+.
T Consensus 68 ~~---~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 68 SY---PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred cC---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 22 23899999999875422222 234444433 47899999999998643
No 218
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.54 E-value=6.1e-14 Score=108.95 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=67.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.+|+++|++|||||||++++.+........+..+.. ..+.+......+.+|||||... +..+...++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~- 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED----------YDRLRPLSY- 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchh----------hhhcccccc-
Confidence 589999999999999999999873211111111111 1111111234688999999642 111111222
Q ss_pred ccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~ 218 (237)
..+|++++|+|....-+... ..++..+.. .+.|+++|+||+|+.+.
T Consensus 71 --~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 71 --PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 120 (175)
T ss_pred --CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccC
Confidence 33899999999764321111 224444433 37899999999998654
No 219
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.54 E-value=5.6e-14 Score=108.23 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=65.5
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCce-----EEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t-----~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+|+++|.+|||||||+++++... .....++++ ...........+.+|||||..... . .....+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~--------~~~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR---FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD-T--------EQLERS 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc---cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc-c--------chHHHH
Confidence 58999999999999999998762 122222222 111111112357899999975310 0 011122
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-----cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 69 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 69 IRW---ADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred HHh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 222 899999999876422221 223333332 3689999999999853
No 220
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=4.5e-14 Score=122.21 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=95.9
Q ss_pred hhccCCCC--CCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC---CeEEEEeCCCCCCcccch
Q 026538 81 AKVSSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKE 155 (237)
Q Consensus 81 ~~~~~~~~--~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~liDTpG~~~~~~~~ 155 (237)
.+...++| .+..++++++|.||+|||||+|.++... ..+.+.+.||+.+...+.. ..+.++||||+-+.-..+
T Consensus 155 rqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEd 232 (620)
T KOG1490|consen 155 RQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEED 232 (620)
T ss_pred HHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhh
Confidence 33445555 5788999999999999999999998874 6788899999887554433 458899999987642221
Q ss_pred HHHHHHHHHHHHHHhccccccEEEEEEeCCC--CCChhH-HHHHHHHHh--cCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~--~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
. ...+...-..+..+ -.+|+|++|.+. |.+... ..++..++. .+.|+|+|+||+|...++++.+..+++.+
T Consensus 233 r--N~IEmqsITALAHL--raaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~ 308 (620)
T KOG1490|consen 233 R--NIIEMQIITALAHL--RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQ 308 (620)
T ss_pred h--hHHHHHHHHHHHHh--hhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHH
Confidence 1 11111111122222 245889999765 333222 345555554 37999999999999987776555544444
Q ss_pred HHH
Q 026538 231 VIF 233 (237)
Q Consensus 231 ~l~ 233 (237)
.+.
T Consensus 309 ~~~ 311 (620)
T KOG1490|consen 309 TII 311 (620)
T ss_pred HHH
Confidence 443
No 221
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.54 E-value=2.9e-14 Score=110.81 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=69.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-----EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-----~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|+|||||++++.+.. ......+++.+. ........+.+|||||... +..+...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG---YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE----------FDKLRPL 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChh----------hcccccc
Confidence 379999999999999999998763 222333333222 1111134678999999632 1112222
Q ss_pred HHhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~ 218 (237)
++. .+|++++|+|..+.-+... ..++..+.. .+.|+++|+||+|+...
T Consensus 68 ~~~---~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 68 CYP---DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD 119 (173)
T ss_pred ccC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC
Confidence 222 3899999999876432222 345555543 36899999999998643
No 222
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.54 E-value=2.6e-14 Score=104.12 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=62.9
Q ss_pred EEEEecCCCCchhhHHHHHhcccce--eeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~--~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+|+|+|.+|||||||+++|++.... .......+.+........ ...+.+||++|...... .+..+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~~~- 73 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS------QHQFFLKK- 73 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC------TSHHHHHH-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc------cccchhhc-
Confidence 6899999999999999999988422 012223333333222211 23488999999643111 11111222
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHH---HHHHHh--cCCcEEEEEecCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HEL---ISLMER--SQTKYQVVLTKTD 214 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~---~~~l~~--~~~piilv~NK~D 214 (237)
+|++++|+|.++..+-.. ..+ +..+.. .++|+++|+||.|
T Consensus 74 ------~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 74 ------ADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ------SCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ------CcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999875422221 122 333332 3599999999998
No 223
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.54 E-value=6.1e-14 Score=113.53 Aligned_cols=112 Identities=14% Similarity=0.050 Sum_probs=67.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccce-eeccCCCC---ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~-~~~~~~~g---~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
++|+++|.+|||||||++++++.... ....+..+ ....+.+......+.+|||||... .. ...+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-----~~-------~~~~ 68 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM-----WT-------EDSC 68 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch-----HH-------HhHH
Confidence 37999999999999999999765321 11111111 111222222346689999999641 01 1111
Q ss_pred HhccccccEEEEEEeCCCCCChh-HHHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~piilv~NK~Dl~~~ 218 (237)
+.. .+|++++|+|+.+.-+.. ...++..+.. .++|+++|+||+|+...
T Consensus 69 ~~~--~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 69 MQY--QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS 121 (221)
T ss_pred hhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc
Confidence 110 389999999987642222 1334444433 36899999999998654
No 224
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.53 E-value=9.6e-14 Score=114.08 Aligned_cols=109 Identities=13% Similarity=0.128 Sum_probs=67.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|||||||++++++... .....+++.+. ..+.. ...+.||||+|... +..+...
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f---~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~----------~~~~~~~ 67 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF---EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP----------FPAMRRL 67 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh----------hhHHHHH
Confidence 3799999999999999999987632 11222222221 11121 25688999999642 1122222
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh------------cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------------~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|.+...+... ..+++.+.. .+.|+++|+||+|+..
T Consensus 68 ~~~~---ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 68 SILT---GDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred Hhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 3332 899999999875422211 233333321 3689999999999864
No 225
>PLN03108 Rab family protein; Provisional
Probab=99.53 E-value=1.9e-13 Score=109.77 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=69.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..+|+++|++|+|||||+|+|++........+..+.+........ ...+.+|||||... +..+...+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~----------~~~~~~~~ 75 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----------FRSITRSY 75 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHHHHH
Confidence 479999999999999999999987321111122222222111111 24588999999531 22233344
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|+....+... ..++..+.. ...|+++|+||+|+..
T Consensus 76 ~~~---ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 76 YRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred hcc---CCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 433 899999999875422222 233333332 3689999999999864
No 226
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.53 E-value=2.4e-13 Score=128.96 Aligned_cols=113 Identities=15% Similarity=0.215 Sum_probs=81.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC---------------ceEEE---EEEE----------------
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---------------LTQTI---NFFK---------------- 135 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g---------------~t~~~---~~~~---------------- 135 (237)
...++|+++|+.++|||||+++|+...+. +.....| .|... .+.+
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCC-cccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 35679999999999999999999865321 1111122 22221 1111
Q ss_pred cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCC
Q 026538 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (237)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl 215 (237)
.+..++++||||+.+ +..........+|++++|+|+..++......+++.+...++|+++++||+|+
T Consensus 96 ~~~~inliDtPGh~d-------------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 96 NEYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred CceEEEEECCCCHHH-------------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcc
Confidence 145689999999743 2222333334499999999999999999999999998889999999999999
Q ss_pred C
Q 026538 216 V 216 (237)
Q Consensus 216 ~ 216 (237)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 7
No 227
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.53 E-value=3.3e-13 Score=113.40 Aligned_cols=142 Identities=23% Similarity=0.314 Sum_probs=97.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeec---cCCCC----ceEEEEEEE-------cCCeEEEEeCCCCCCcccch-
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT---SDKPG----LTQTINFFK-------LGTKLCLVDLPGYGFAYAKE- 155 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~---~~~~g----~t~~~~~~~-------~~~~~~liDTpG~~~~~~~~- 155 (237)
-.++|+++|.+|.|||||+|.|++.. .... .+..+ .|..+.... ....++++|||||++.....
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTS-LVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhh-ccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 45799999999999999999999872 1111 01111 222222221 13568999999999853322
Q ss_pred ---HHHHHHHHHHHHHHhc-----------cccccEEEEEEe-CCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538 156 ---EVKDAWEELVKEYVST-----------RVSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 156 ---~~~~~~~~~~~~~~~~-----------~~~~d~v~~vvd-~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~ 220 (237)
.+......-.+.|+.. ...+++++|++. ..+++.+.+.++++.+... +.+|-|+.|+|.++.++
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLIPVIAKADTLTDDE 179 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCeeeeeeccccCCHHH
Confidence 2222222333344321 112678888887 4579999999999988874 89999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 026538 221 VARRAMQIEEVIFY 234 (237)
Q Consensus 221 ~~~~~~~l~~~l~~ 234 (237)
+....+.+.+.+..
T Consensus 180 l~~~K~~I~~~i~~ 193 (373)
T COG5019 180 LAEFKERIREDLEQ 193 (373)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887764
No 228
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.53 E-value=2.3e-13 Score=120.66 Aligned_cols=130 Identities=17% Similarity=0.213 Sum_probs=89.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccccee-----------------------------eccCCCCceEEEEEEE---cCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LGT 138 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~-----------------------------~~~~~~g~t~~~~~~~---~~~ 138 (237)
...+|+++|+.++|||||+.+|+...+.. ......|.|.++.+.. .+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 34689999999999999999987521100 0011345666654333 366
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-------ChhHHHHHHHHHhcCCc-EEEEE
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL 210 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~p-iilv~ 210 (237)
.++|+||||+.+ ++.........+|++++|+|+..+. ..+..+.+..+...++| +++++
T Consensus 86 ~i~lIDtPGh~~-------------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v 152 (446)
T PTZ00141 86 YFTIIDAPGHRD-------------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCI 152 (446)
T ss_pred EEEEEECCChHH-------------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence 799999999642 3333344444599999999998875 35667788888888887 67899
Q ss_pred ecCCCC----ChHHHHHHHHHHHHHHH
Q 026538 211 TKTDTV----FPIDVARRAMQIEEVIF 233 (237)
Q Consensus 211 NK~Dl~----~~~~~~~~~~~l~~~l~ 233 (237)
||+|.. ++....+..+++.+.+.
T Consensus 153 NKmD~~~~~~~~~~~~~i~~~i~~~l~ 179 (446)
T PTZ00141 153 NKMDDKTVNYSQERYDEIKKEVSAYLK 179 (446)
T ss_pred EccccccchhhHHHHHHHHHHHHHHHH
Confidence 999953 23455666666666654
No 229
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.53 E-value=5.7e-14 Score=116.78 Aligned_cols=130 Identities=21% Similarity=0.247 Sum_probs=89.7
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE----EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
-|.++|.||+|||||+++++... ..+.++|.||..... ...+..|++-|.||+.+..+.. ..+-..|+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G------~GLG~~FL 232 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG------VGLGLRFL 232 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccC------CCccHHHH
Confidence 56789999999999999999985 788999999976532 2346779999999987643322 12334555
Q ss_pred hccccccEEEEEEeCCCCCC--h-hH-HHHHHHHHh-----cCCcEEEEEecCCCC-ChHHHHHHHHHHHHH
Q 026538 170 STRVSLKRVCLLIDTKWGVK--P-RD-HELISLMER-----SQTKYQVVLTKTDTV-FPIDVARRAMQIEEV 231 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~--~-~~-~~~~~~l~~-----~~~piilv~NK~Dl~-~~~~~~~~~~~l~~~ 231 (237)
++.+.+.++++|+|.+..-. + .+ ..+...+.. .++|.++|+||+|+. +.++.+...+.+.+.
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~ 304 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA 304 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh
Confidence 55566999999999764211 1 11 233344443 368999999999955 555555555555543
No 230
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.53 E-value=6.7e-14 Score=108.19 Aligned_cols=66 Identities=26% Similarity=0.465 Sum_probs=45.0
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHH-HhcCCcEEEEEecC
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKT 213 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l-~~~~~piilv~NK~ 213 (237)
.+.|+||||+.+...... .+...|+. .+|+++||+++...+...+...+... ......+++|+||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~------~~~~~~~~---~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHT------EITEEYLP---KADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTS------HHHHHHHS---TTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhH------HHHHHhhc---cCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 489999999976322221 44555553 39999999999987776665555544 44456699999995
No 231
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.53 E-value=2.7e-13 Score=107.60 Aligned_cols=141 Identities=21% Similarity=0.280 Sum_probs=93.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeecc-------CCCCceEEEE-------EEEcCCeEEEEeCCCCCCcccchH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEE 156 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-------~~~g~t~~~~-------~~~~~~~~~liDTpG~~~~~~~~~ 156 (237)
-.++|++||.+|.|||||+|.|+..+ +...+ +.+-| ..+. ......+++++|||||++....+.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT-~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKT-TEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccce-EEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 34799999999999999999999763 22111 11212 2221 111245689999999998643332
Q ss_pred H----HHHHHHHHHHHHhc-----------cccccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538 157 V----KDAWEELVKEYVST-----------RVSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 157 ~----~~~~~~~~~~~~~~-----------~~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~ 220 (237)
. .....+-...|++. ...+++++|++.. .+.+.+.+.++++.+.+. +.++-|+.|+|-++-++
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaDtlTleE 201 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKADTLTLEE 201 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecccccHHH
Confidence 1 11111112222221 1125778888875 467889999999988875 78999999999999888
Q ss_pred HHHHHHHHHHHHHh
Q 026538 221 VARRAMQIEEVIFY 234 (237)
Q Consensus 221 ~~~~~~~l~~~l~~ 234 (237)
.....+.+++.+..
T Consensus 202 r~~FkqrI~~el~~ 215 (336)
T KOG1547|consen 202 RSAFKQRIRKELEK 215 (336)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887654
No 232
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.52 E-value=2.7e-14 Score=111.53 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=73.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
...+|+++|..||||||+++.|... ......+..|.... .+...+..+.+||.+|... .+..|. .|+.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~-~~~~~~pT~g~~~~-~i~~~~~~~~~~d~gG~~~------~~~~w~----~y~~ 80 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNG-EISETIPTIGFNIE-EIKYKGYSLTIWDLGGQES------FRPLWK----SYFQ 80 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSS-SEEEEEEESSEEEE-EEEETTEEEEEEEESSSGG------GGGGGG----GGHT
T ss_pred cEEEEEEECCCccchHHHHHHhhhc-cccccCcccccccc-eeeeCcEEEEEEecccccc------ccccce----eecc
Confidence 4469999999999999999999876 33333333332222 2223577899999999532 222333 3333
Q ss_pred ccccccEEEEEEeCCCC--CChhHHHHHHHHH---hcCCcEEEEEecCCCCChH
Q 026538 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLME---RSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~---~~~~piilv~NK~Dl~~~~ 219 (237)
. +++++||+|+++. +.+....+.+.+. ..++|+++++||+|+....
T Consensus 81 ~---~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 81 N---ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp T---ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred c---cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence 3 8999999998853 1222222323333 2368999999999987543
No 233
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.51 E-value=2e-13 Score=101.99 Aligned_cols=111 Identities=18% Similarity=0.250 Sum_probs=76.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
..+|+++|..|+||||+++.|.+. ....+++..|..... ....+..+.+||.-|.. ..++.|.. |+..
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~Ikt-l~~~~~~L~iwDvGGq~------~lr~~W~n----Yfes 83 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQIKT-LEYKGYTLNIWDVGGQK------TLRSYWKN----YFES 83 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCC-CccccCCccceeeEE-EEecceEEEEEEcCCcc------hhHHHHHH----hhhc
Confidence 479999999999999999999998 445555554433322 22347789999999943 24445554 4444
Q ss_pred cccccEEEEEEeCCCCCChhH-H----HHHHHHHhcCCcEEEEEecCCCCC
Q 026538 172 RVSLKRVCLLIDTKWGVKPRD-H----ELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~-~----~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.|++++|+|+++...-++ . +.+..-+..+.|++++.||.|+..
T Consensus 84 ---tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 84 ---TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred ---cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 899999999976432222 1 222222234789999999999973
No 234
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=5.1e-14 Score=109.43 Aligned_cols=114 Identities=22% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccC-CCC---ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g---~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
+..++|+++|.+++|||-|+.++...+ ....+. ..| .|+.+.+...-.+..||||+|.. .+..+.
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnE-F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQE----------RyrAit 80 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNE-FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQE----------RYRAIT 80 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccc-cCcccccceeEEEEeeceeecCcEEEEeeecccchh----------hhcccc
Confidence 356899999999999999999999874 222221 112 23333333334567899999943 345667
Q ss_pred HHHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHhc---CCcEEEEEecCCCCC
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVF 217 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~---~~piilv~NK~Dl~~ 217 (237)
..|++. +.++++|+|.....+.. ...|+++++.+ ++++++|+||+||..
T Consensus 81 SaYYrg---AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 81 SAYYRG---AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred chhhcc---cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 778776 89999999987654433 35677777764 688999999999964
No 235
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3.7e-13 Score=113.86 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=97.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee------ccCCCCceEEEEEE-----E--cCCeEEEEeCCCCCCcccch--
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR------TSDKPGLTQTINFF-----K--LGTKLCLVDLPGYGFAYAKE-- 155 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~------~~~~~g~t~~~~~~-----~--~~~~~~liDTpG~~~~~~~~-- 155 (237)
-.++++++|.+|.|||||+|+|+... +.. ....+..|..+... . ....++++||||+++.....
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~-l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTD-LSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhh-ccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 45799999999999999999999872 111 11111122222211 1 13568899999999863322
Q ss_pred --HHHHHHHHHHHHHHhcc----------ccccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHH
Q 026538 156 --EVKDAWEELVKEYVSTR----------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 222 (237)
Q Consensus 156 --~~~~~~~~~~~~~~~~~----------~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~ 222 (237)
.+.....+-...|+... ..+++++|++.+ .+++.+.|.++++.+.. .+++|-|+.|+|.++++++.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~ 177 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELN 177 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCHHHHH
Confidence 22222333334444321 136788888875 56899999999888876 48999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 026538 223 RRAMQIEEVIFY 234 (237)
Q Consensus 223 ~~~~~l~~~l~~ 234 (237)
.....+.+.+..
T Consensus 178 ~~K~~I~~~i~~ 189 (366)
T KOG2655|consen 178 QFKKRIRQDIEE 189 (366)
T ss_pred HHHHHHHHHHHH
Confidence 999888887764
No 236
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=5.4e-13 Score=116.67 Aligned_cols=113 Identities=25% Similarity=0.378 Sum_probs=90.6
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
++.|.|-++|+-..|||||+.+|.+.. .......|.|+++-.+. .|..++++||||+.. |..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~--VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaA----------F~a-- 216 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSS--VAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAA----------FSA-- 216 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCc--eehhhcCCccceeceEEEecCCCCEEEEecCCcHHH----------HHH--
Confidence 467899999999999999999999883 23345567888874433 478999999999742 222
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.-.+.....|+|++|+-+.+++.++..+.++..+..++|+++++||||...
T Consensus 217 -MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 217 -MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPG 267 (683)
T ss_pred -HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCC
Confidence 222334447999999999999999999999999999999999999999863
No 237
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=6.1e-13 Score=116.64 Aligned_cols=112 Identities=20% Similarity=0.302 Sum_probs=88.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc------CCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~------~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
+.|.|.++|+-..|||||+..+-+.+ ......-|.|+++-.+.. ...++++||||+.. |
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~--Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA-------------F 68 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA-------------F 68 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCc--cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHH-------------H
Confidence 45899999999999999999998873 333444568888743332 36799999999742 2
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
...-.+...-+|++++|+|+.+++.++..+.++.++..++|+++++||+|+.+
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~ 121 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPE 121 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCC
Confidence 22222333448999999999999999999999999999999999999999974
No 238
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.2e-12 Score=109.82 Aligned_cols=142 Identities=19% Similarity=0.243 Sum_probs=99.4
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccce-eeccCCCCceEEEEEEEc--------------------------------
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFKL-------------------------------- 136 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~-~~~~~~~g~t~~~~~~~~-------------------------------- 136 (237)
...|.|+++|+.+.||||+|+.|+..+.. ..+++.|.|.+-+...+.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 46799999999999999999999987411 112222322222111110
Q ss_pred ----------CCeEEEEeCCCCCCcccchHHHH--HHHHHHHHHHhccccccEEEEEEeCCC-CCChhHHHHHHHHHhcC
Q 026538 137 ----------GTKLCLVDLPGYGFAYAKEEVKD--AWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQ 203 (237)
Q Consensus 137 ----------~~~~~liDTpG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~~ 203 (237)
-..+++|||||+-+...+ .+.+ .+...+.+|... +|.|++++|+.. .++++..+++..++...
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQ-risR~ydF~~v~~WFaeR---~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQ-RISRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFKRVIDALKGHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchh-cccccCChHHHHHHHHHh---ccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence 023999999998653211 1111 133444444444 999999999754 56777788999999888
Q ss_pred CcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 026538 204 TKYQVVLTKTDTVFPIDVARRAMQIEEVIFYL 235 (237)
Q Consensus 204 ~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~~ 235 (237)
-.+-+|+||+|.++.+++.++.-.+...++.+
T Consensus 212 dkiRVVLNKADqVdtqqLmRVyGALmWslgkv 243 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 243 (532)
T ss_pred ceeEEEeccccccCHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999999998888877754
No 239
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.48 E-value=3e-13 Score=107.73 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=67.3
Q ss_pred ecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcccc
Q 026538 98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (237)
Q Consensus 98 vG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (237)
+|.+|||||||+++++.........+..|.+.....+. ....+.+|||||... +..+...|+..
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~~~--- 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK----------FGGLRDGYYIQ--- 67 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHhcC---
Confidence 69999999999999997632111222222222111111 246789999999532 33444455554
Q ss_pred ccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCC
Q 026538 175 LKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTV 216 (237)
Q Consensus 175 ~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~ 216 (237)
++++++|+|.+...+... ..|+..+.. .++|+++|+||+|+.
T Consensus 68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 899999999886533322 245555544 368999999999985
No 240
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.8e-13 Score=103.35 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=78.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccC-CCCc---eEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGL---TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~---t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
..++++++|.+|||||.|+.+++... ...+.+ .-|. .+.+.+.....++.+|||+|.. .+.+..+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~kr-F~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe----------~frsv~~ 73 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKR-FQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQE----------SFRSVTR 73 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccC-ccccccceeeeeeceeEEEEcCceEEEEEEecCCcH----------HHHHHHH
Confidence 45799999999999999999999984 232222 1221 1222333335779999999953 3567788
Q ss_pred HHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHhc---CCcEEEEEecCCCCChH
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~---~~piilv~NK~Dl~~~~ 219 (237)
.|++. +.++++|+|....-+.. ...|+..++.. +.-+++++||+||....
T Consensus 74 syYr~---a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 74 SYYRG---AAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHhcc---CcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 88887 88899999976532221 23455555543 56688999999997443
No 241
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.48 E-value=6.3e-13 Score=117.72 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=86.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee--ccCCCCceEEEEEEE---------------------------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGLTQTINFFK--------------------------------- 135 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~--~~~~~g~t~~~~~~~--------------------------------- 135 (237)
...+|+++|+-..|||||+.+|++.. ... ..-..|.|.+.-|..
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~-~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVK-TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCC-cccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 34689999999999999999999753 111 111123332221110
Q ss_pred ---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-CChhHHHHHHHHHhcCC-cEEEEE
Q 026538 136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVL 210 (237)
Q Consensus 136 ---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~~-piilv~ 210 (237)
....+.++||||+. .++.........+|.+++|+|+..+ ...+..+.+..+...++ |+++|+
T Consensus 112 ~~~~~~~i~~IDtPGH~-------------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD-------------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred cccccceEeeeeCCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 12368999999963 2333334444458999999999875 56666666666666666 488999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHH
Q 026538 211 TKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 211 NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
||+|+.+.+...+..+++++.+.
T Consensus 179 NKiDlv~~~~~~~~~~ei~~~l~ 201 (460)
T PTZ00327 179 NKIDLVKEAQAQDQYEEIRNFVK 201 (460)
T ss_pred ecccccCHHHHHHHHHHHHHHHH
Confidence 99999987777676777766554
No 242
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=9.8e-13 Score=96.86 Aligned_cols=113 Identities=20% Similarity=0.246 Sum_probs=80.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE-------EEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~-------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
.++|+++|..|+|||.|+.+++..- ..+..|.|..+.+ .....++.+|||+|. +.+..+
T Consensus 7 lfkivlvgnagvgktclvrrftqgl----fppgqgatigvdfmiktvev~gekiklqiwdtagq----------erfrsi 72 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGL----FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ----------ERFRSI 72 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccC----CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch----------HHHHHH
Confidence 4799999999999999999998762 2333344433322 122467899999994 346677
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCChHHH
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~~~~~ 221 (237)
...|+++ ++.+++|.|.+...+... .+|++.+... ++--|+|+||+|+.+..++
T Consensus 73 tqsyyrs---ahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrev 130 (213)
T KOG0095|consen 73 TQSYYRS---AHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREV 130 (213)
T ss_pred HHHHhhh---cceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhh
Confidence 8888887 999999999876433322 4666666543 4557899999999876554
No 243
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.47 E-value=1.4e-12 Score=105.07 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=74.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCC-ceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|..|||||||+++|.+... .. ...+. .+........ ...+.+|||+|..+ +..+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~----------~~~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PE-GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE----------YRSLRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cc-cCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH----------HHHHHHH
Confidence 6999999999999999999998842 21 11111 1111111111 34589999999532 3345555
Q ss_pred HHhccccccEEEEEEeCCC--CCChhHHHHHHHHHhc---CCcEEEEEecCCCCChHH
Q 026538 168 YVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~--~~~~~~~~~~~~l~~~---~~piilv~NK~Dl~~~~~ 220 (237)
|+.. ++++++++|... ........+...+... ..|+++|.||+|+.....
T Consensus 74 y~~~---~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 74 YYRG---ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred HhcC---CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 5554 899999999764 3333345566555543 489999999999986654
No 244
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=1.8e-12 Score=99.02 Aligned_cols=122 Identities=18% Similarity=0.194 Sum_probs=84.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee---c-cC----CCCceEEEEEE----EcCCeEEEEeCCCCCCcccchHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR---T-SD----KPGLTQTINFF----KLGTKLCLVDLPGYGFAYAKEEVK 158 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~---~-~~----~~g~t~~~~~~----~~~~~~~liDTpG~~~~~~~~~~~ 158 (237)
...+|++.|+.++||||++.++.....+.. . +. ...+|....+. ..+..+.|+||||+..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R-------- 80 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER-------- 80 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH--------
Confidence 346999999999999999999998731111 0 11 11255544332 2347899999999642
Q ss_pred HHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC-CcEEEEEecCCCCChHHHHHHH
Q 026538 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRA 225 (237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~Dl~~~~~~~~~~ 225 (237)
+..++.-+.+. +.++++++|++.+.......+++.+.... +|+++++||.|+.+....+.+.
T Consensus 81 --F~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~ 143 (187)
T COG2229 81 --FKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIR 143 (187)
T ss_pred --HHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHH
Confidence 23333333333 89999999999887777778888888777 9999999999998544333333
No 245
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.45 E-value=3.6e-13 Score=102.54 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=76.2
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccccee---eccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~---~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
....+|+++|.+|+|||||+|.+....... .+-.....|+++.+...-..+.+|||+|.. .+..+.-
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQE----------RFqsLg~ 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQE----------RFQSLGV 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHH----------Hhhhccc
Confidence 456799999999999999999998763111 111222367777665445668899999942 3444544
Q ss_pred HHHhccccccEEEEEEeCCC--CCChhHHHHHHHHHh------cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMER------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~--~~~~~~~~~~~~l~~------~~~piilv~NK~Dl~~ 217 (237)
.+++. +|.+++++|... .+...+.+--+++.. ..-|+|+++||+|+..
T Consensus 77 aFYRg---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 77 AFYRG---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred ceecC---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 55554 899999988764 333333322233332 2468999999999864
No 246
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.45 E-value=5.4e-13 Score=99.55 Aligned_cols=110 Identities=21% Similarity=0.101 Sum_probs=66.7
Q ss_pred EecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 97 lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
++|++|+|||||+|++.+... . ......+..+. .... .+..+.+|||||.... ......+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~~-- 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF-V-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF----------RSLRRLYY-- 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCc-C-CcccccchhheeeEEEEECCEEEEEEEEecCChHHH----------HhHHHHHh--
Confidence 579999999999999998732 1 11111111111 1111 2567999999996531 11112222
Q ss_pred cccccEEEEEEeCCCCCChhHHHH-----HHHHHhcCCcEEEEEecCCCCChHHH
Q 026538 172 RVSLKRVCLLIDTKWGVKPRDHEL-----ISLMERSQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~-----~~~l~~~~~piilv~NK~Dl~~~~~~ 221 (237)
..+|++++|+|++.+........ .......++|+++|+||+|+......
T Consensus 67 -~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~ 120 (157)
T cd00882 67 -RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV 120 (157)
T ss_pred -cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch
Confidence 23899999999886533333221 22233457999999999999765443
No 247
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.44 E-value=2.6e-12 Score=103.45 Aligned_cols=115 Identities=13% Similarity=0.035 Sum_probs=68.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
....+|+++|++|||||||+++++.........+..+.......+ .....+.+|||||... +..+..
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~----------~~~~~~ 76 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK----------FGGLRD 76 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchh----------hhhhhH
Confidence 345799999999999999998765542211222222222211111 1245789999999532 122233
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
.++.. ++++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 77 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 77 GYYIK---GQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred HHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 34433 799999999875432222 233333322 3689999999999864
No 248
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.44 E-value=1.8e-12 Score=109.90 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=59.1
Q ss_pred EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE--E-------------------------cCCeEEEEeCCC
Q 026538 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-------------------------LGTKLCLVDLPG 147 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~--~-------------------------~~~~~~liDTpG 147 (237)
|+++|.+|||||||+|+|++.. ..+++.|++|.+.... . ...++.+|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 5799999999999999999984 5778888888665321 0 124689999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (237)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (237)
+...... ...+...++.....+|++++|+|++
T Consensus 79 lv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHE------GKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccc------hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 8543211 1233344444445599999999986
No 249
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.44 E-value=8e-13 Score=101.44 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=65.2
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCC-ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
+|+++|.+|||||||+++++.........+..+ ....+.+......+.+|||+|... ..|+.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~~~~-- 64 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQFAS-- 64 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc---------------hhHHh--
Confidence 799999999999999999876622111111111 111122211124588999999642 01222
Q ss_pred ccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCC
Q 026538 173 VSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTV 216 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~ 216 (237)
.+|++++|+|.++.-+... ..++..+.. .+.|+++|+||+|+.
T Consensus 65 -~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 65 -WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 2899999999876433333 344444443 357999999999984
No 250
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.44 E-value=1.2e-12 Score=122.55 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=78.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccce--------eeccC------CCCceEEEE-------EEEcCCeEEEEeCCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTIN-------FFKLGTKLCLVDLPGYG 149 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~--------~~~~~------~~g~t~~~~-------~~~~~~~~~liDTpG~~ 149 (237)
...+|+++|+.++|||||+++|+...+. ....+ .+|.|.+.. +.+.+..+++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4579999999999999999999753110 00011 133343321 22236779999999986
Q ss_pred CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+- ......++. .+|++++|+|+..++...+..+++.+...+.|+++|+||+|..
T Consensus 98 ~f----------~~~~~~al~---~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 98 DF----------GGDVTRAMR---AVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred cc----------HHHHHHHHH---hcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 41 111122222 2999999999998888888888887777788999999999986
No 251
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.43 E-value=8.7e-13 Score=109.04 Aligned_cols=92 Identities=23% Similarity=0.231 Sum_probs=68.3
Q ss_pred CCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
++.+...|+++|+|++|||||+|.|++.. ..+.+.+.||... .+.+.|..+.++|+||+.+..+... ..
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~------gr 130 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR------GR 130 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCC------CC
Confidence 34667899999999999999999999985 6788889888775 3455688999999999865432221 01
Q ss_pred HHHHHhccccccEEEEEEeCCCC
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWG 187 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~ 187 (237)
-++.+.....||+|++|+|+...
T Consensus 131 G~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 131 GRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred cceeeeeeccCCEEEEEEecCCC
Confidence 12334444559999999997643
No 252
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.42 E-value=3.7e-12 Score=119.49 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=77.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeec--------cC------CCCceEEE---EEEE----cCCeEEEEeCCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--------SD------KPGLTQTI---NFFK----LGTKLCLVDLPGYG 149 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~--------~~------~~g~t~~~---~~~~----~~~~~~liDTpG~~ 149 (237)
...+|+++|+.++|||||+.+|+...+.... .+ ..|.|.+. .+.+ .+..++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4569999999999999999999864321110 00 11222221 1111 25668999999986
Q ss_pred CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+- ...... ....+|++++|+|+..++...+..+++.+...+.|.++++||+|+.
T Consensus 99 df----------~~~~~~---~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DF----------GGDVTR---AMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred Ch----------HHHHHH---HHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 41 111112 2223899999999999988888888888777788999999999986
No 253
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.41 E-value=4.8e-12 Score=112.24 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=83.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccccee-----------------------------eccCCCCceEEEEEEE---cCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LGT 138 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~-----------------------------~~~~~~g~t~~~~~~~---~~~ 138 (237)
...+|+++|+.++|||||+-+|+...+.. ......|.|.++.+.. .+.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 34689999999999999999887421100 0011234566654333 366
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-CC------hhHHHHHHHHHhcCCc-EEEEE
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VK------PRDHELISLMERSQTK-YQVVL 210 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~------~~~~~~~~~l~~~~~p-iilv~ 210 (237)
.++++||||+. +++.........+|++++|+|+..+ +. .+..+.+..+...++| +++++
T Consensus 86 ~i~liDtPGh~-------------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 86 YCTVIDAPGHR-------------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred EEEEEECCCHH-------------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 79999999963 2333333333449999999999875 21 4556666667777885 68899
Q ss_pred ecCCCCC----hHHHHHHHHHHHHHHH
Q 026538 211 TKTDTVF----PIDVARRAMQIEEVIF 233 (237)
Q Consensus 211 NK~Dl~~----~~~~~~~~~~l~~~l~ 233 (237)
||+|+.+ .....+..++++..++
T Consensus 153 NKmD~~~~~~~~~~~~~i~~ei~~~l~ 179 (447)
T PLN00043 153 NKMDATTPKYSKARYDEIVKEVSSYLK 179 (447)
T ss_pred EcccCCchhhhHHHHHHHHHHHHHHHH
Confidence 9999863 2233444555555444
No 254
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.41 E-value=3.9e-12 Score=109.15 Aligned_cols=125 Identities=17% Similarity=0.249 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccc---cee-----------eccCCCC---ceEEEEEEE-------c----CCeEE
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQW---GVV-----------RTSDKPG---LTQTINFFK-------L----GTKLC 141 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~---~~~-----------~~~~~~g---~t~~~~~~~-------~----~~~~~ 141 (237)
.+.+.|+++|+.++|||||+|+|.+.- ... .+++.+| +|.+..+.. . ..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 466799999999999999999999871 122 5677888 777765521 1 37899
Q ss_pred EEeCCCCCCcccchHHH--H------HHH----------HH-HHHHHhccccccEEEEEE-eCC------CCCChhHHHH
Q 026538 142 LVDLPGYGFAYAKEEVK--D------AWE----------EL-VKEYVSTRVSLKRVCLLI-DTK------WGVKPRDHEL 195 (237)
Q Consensus 142 liDTpG~~~~~~~~~~~--~------~~~----------~~-~~~~~~~~~~~d~v~~vv-d~~------~~~~~~~~~~ 195 (237)
++||+|+.........+ . .|. ++ .+..+. ..+++.++|. |.+ ......+..+
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~--dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ--EHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH--hcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 99999986532111111 0 000 00 111111 1378888888 875 3455667889
Q ss_pred HHHHHhcCCcEEEEEecCCCC
Q 026538 196 ISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 196 ~~~l~~~~~piilv~NK~Dl~ 216 (237)
++.++..++|+++|+||+|-.
T Consensus 173 i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 173 IEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred HHHHHhcCCCEEEEEECcCCC
Confidence 999999999999999999943
No 255
>PTZ00258 GTP-binding protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=113.51 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=65.0
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--------------------CCeEEEEeCCCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG 149 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------------~~~~~liDTpG~~ 149 (237)
....+|+++|.||||||||+|+|++.. ..+++.|++|.+...... +..+.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 455699999999999999999998874 678899999987644322 2248999999987
Q ss_pred CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (237)
...... ..+...++.....+|++++|+|+.
T Consensus 97 ~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEG------EGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcch------hHHHHHHHHHHHHCCEEEEEEeCC
Confidence 532221 123344555555699999999974
No 256
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.5e-12 Score=111.25 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=93.2
Q ss_pred CEEEEecCCCCchhhHHHHHhccccee--------------eccC------CCC---ceEEEEEEEcCCeEEEEeCCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTSD------KPG---LTQTINFFKLGTKLCLVDLPGYG 149 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~--------------~~~~------~~g---~t~~~~~~~~~~~~~liDTpG~~ 149 (237)
...+|+-+|.+|||||-..|+---+.. ..|+ .+| ++.-+++.+.+..++|+||||+.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 488999999999999997766210000 0010 111 23334566668899999999986
Q ss_pred CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
+ +....++++..+|..+.|+|+..++.++...+++.++-.++|++-.+||+|.... +-.+++++++
T Consensus 93 D-------------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r-dP~ELLdEiE 158 (528)
T COG4108 93 D-------------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGR-DPLELLDEIE 158 (528)
T ss_pred c-------------cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccC-ChHHHHHHHH
Confidence 5 2223333333489999999999999999999999999999999999999998643 3456778888
Q ss_pred HHHHhh
Q 026538 230 EVIFYL 235 (237)
Q Consensus 230 ~~l~~~ 235 (237)
+.|+--
T Consensus 159 ~~L~i~ 164 (528)
T COG4108 159 EELGIQ 164 (528)
T ss_pred HHhCcc
Confidence 777643
No 257
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.40 E-value=9.5e-13 Score=98.08 Aligned_cols=108 Identities=20% Similarity=0.162 Sum_probs=73.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-------EEEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-------~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
.++|+++|.+|+|||||+-++.... ..+...+|..+. +.....++.||||+|. +.|..+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~----fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq----------ErFRtL 76 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT----FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ----------ERFRTL 76 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc----cCccCCceeeeeEEEEEEEEcCceEEEEEEeccch----------Hhhhcc
Confidence 4799999999999999999998772 222223333322 1222467899999994 335667
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc----CCcEEEEEecCCCC
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTV 216 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~----~~piilv~NK~Dl~ 216 (237)
...|++. +.++++|+|....-+... ..|++.+... ++-.++|+||+|.-
T Consensus 77 TpSyyRg---aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 77 TPSYYRG---AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred CHhHhcc---CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 7788877 899999999765322221 3455555432 45568899999975
No 258
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.40 E-value=1.4e-12 Score=103.48 Aligned_cols=110 Identities=13% Similarity=-0.025 Sum_probs=65.9
Q ss_pred CEEEEecCCCCchhhHHH-HHhcccce--eeccCCCCceE--E-E------------EEEEcCCeEEEEeCCCCCCcccc
Q 026538 93 PEIAFAGRSNVGKSSMLN-ALTRQWGV--VRTSDKPGLTQ--T-I------------NFFKLGTKLCLVDLPGYGFAYAK 154 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin-~L~~~~~~--~~~~~~~g~t~--~-~------------~~~~~~~~~~liDTpG~~~~~~~ 154 (237)
.+|+++|.+|||||||++ .+.+.... ........|.- + . ........+.+|||||...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence 589999999999999996 55443100 00111111210 1 0 0111145689999999642
Q ss_pred hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH--HHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
.+...|+. .+|++++|+|..+..+.... .|+..+.. .+.|+++|+||+|+..
T Consensus 79 --------~~~~~~~~---~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 79 --------KDRRFAYG---RSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred --------hhhcccCC---CCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 01112333 39999999998765433332 35555543 3689999999999853
No 259
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.40 E-value=9.1e-13 Score=112.84 Aligned_cols=112 Identities=29% Similarity=0.293 Sum_probs=67.5
Q ss_pred CEEEEecCCCCchhhHHHHHhccc----ceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~----~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.+|+|+|.+|+|||||||+|.|-. +.+.++. ..||.....|.. -..+.+||.||++.+.... ..++.
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~------~~Yl~ 108 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPP------EEYLK 108 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS-TTEEEEEE--GGGSS--H------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCH------HHHHH
Confidence 699999999999999999998731 2222222 235555554443 3579999999987542211 11121
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl 215 (237)
.. .....|.++++.+. .+...+..+.+.+...++|+++|.||+|.
T Consensus 109 ~~--~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 109 EV--KFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp HT--TGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred Hc--cccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 11 12237876666543 57889999999999999999999999996
No 260
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.40 E-value=8.3e-13 Score=101.22 Aligned_cols=56 Identities=34% Similarity=0.596 Sum_probs=50.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~ 148 (237)
..+|+++|.||+|||||+|+|.+. ....+++.+|+|+...++..+..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 468899999999999999999998 55788999999999988877777999999995
No 261
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.40 E-value=5.5e-12 Score=102.08 Aligned_cols=132 Identities=17% Similarity=0.133 Sum_probs=75.5
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
+|+++|+.++||||+.+.+++.. .+.-+..-+.|.++.... ....+.+||.||....... .+..-....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~-----~~~~~~~~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN-----YFNSQREEIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT-----THTCCHHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc-----cccccHHHHH
Confidence 68999999999999999999873 233334445565554333 2568999999997542111 0000011122
Q ss_pred hccccccEEEEEEeCCCCCChhHH----HHHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDH----ELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY 234 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~ 234 (237)
+. +.+++||+|+...-...+. ..++.+... +..+.+.+.|+|++.++......+.+.+.+..
T Consensus 75 ~~---v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~ 142 (232)
T PF04670_consen 75 SN---VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRD 142 (232)
T ss_dssp CT---ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHH
T ss_pred hc---cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHH
Confidence 22 8999999998732223332 222333332 67799999999999888777776666665543
No 262
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.39 E-value=3.1e-12 Score=100.81 Aligned_cols=110 Identities=16% Similarity=0.064 Sum_probs=65.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE----EEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.+|+++|++|+|||||++++....... ...+..... +.+......+.+|||||.... ......+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~~ 69 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY----------ERLRPLS 69 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhc----------cccchhh
Confidence 389999999999999999998552211 111111111 111111245789999996431 1111112
Q ss_pred HhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~ 217 (237)
+ ..++++++++|....-+... ..++..+... ..|+++|+||+|+..
T Consensus 70 ~---~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 70 Y---SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred c---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 2 23899999998764322222 2355555432 689999999999853
No 263
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.39 E-value=2.5e-12 Score=98.50 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=67.8
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
+|+++|.+|||||||++++.+........+..|..... .+.. ....+.+||++|... +..+...++.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~~~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQER----------FDSLRDIFYR 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGG----------GHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccc----------cccccccccc
Confidence 68999999999999999999873211111222211111 1211 245689999999542 1222233333
Q ss_pred ccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
. +|++++++|..+.-+-.. ..++..+.. ...|+++|+||+|+..
T Consensus 71 ~---~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 71 N---SDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp T---ESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred c---cccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 3 899999999865311111 244444433 2489999999999875
No 264
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.2e-11 Score=105.49 Aligned_cols=127 Identities=19% Similarity=0.285 Sum_probs=85.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccc-----------------------ee------eccCCCCceEEEEE---EEcCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------VV------RTSDKPGLTQTINF---FKLGT 138 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~-----------------------~~------~~~~~~g~t~~~~~---~~~~~ 138 (237)
...+++++|+..+|||||+-+|+-..+ ++ ......|.|.+... .....
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 446999999999999999988873210 00 11123456666533 33356
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-------CChhHHHHHHHHHhcCC-cEEEEE
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-piilv~ 210 (237)
.++|+|+||+. +++...+.....+|..++|+|++.+ ...+..+.+-...-.++ .+++++
T Consensus 86 ~~tIiDaPGHr-------------dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVav 152 (428)
T COG5256 86 NFTIIDAPGHR-------------DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAV 152 (428)
T ss_pred eEEEeeCCchH-------------HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEE
Confidence 79999999964 3455555555559999999999876 55556665555555555 488999
Q ss_pred ecCCCCC--hHHHHHHHHHHHH
Q 026538 211 TKTDTVF--PIDVARRAMQIEE 230 (237)
Q Consensus 211 NK~Dl~~--~~~~~~~~~~l~~ 230 (237)
||+|+++ ++..++....+..
T Consensus 153 NKMD~v~wde~rf~ei~~~v~~ 174 (428)
T COG5256 153 NKMDLVSWDEERFEEIVSEVSK 174 (428)
T ss_pred EcccccccCHHHHHHHHHHHHH
Confidence 9999984 4444555555555
No 265
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.38 E-value=4e-13 Score=116.19 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=87.4
Q ss_pred CEEEEecCCCCchhhHHHHHhccc----ceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~----~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.+++++|.+|||||||+|+|++.. ....++..||+|++......+..+.++||||+.... .+...+..-.-.+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~---~~~~~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSH---QMAHYLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChh---HhhhhcCHHHHhh
Confidence 589999999999999999999853 235788999999999887776678999999987531 1111111101112
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV 231 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~ 231 (237)
+.-......+.+.+|..+.+.......+..+......+.+.++|.+.......++..+.+++.
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~ 294 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKH 294 (360)
T ss_pred cCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhh
Confidence 333344677888888765433333333333333345677888888876554444444444443
No 266
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3e-12 Score=112.06 Aligned_cols=133 Identities=22% Similarity=0.232 Sum_probs=92.1
Q ss_pred CCCCCCCEEEEecCCCCchhhHHHHHhcccce-------------eeccCCCCceEEE---EEEEcC---CeEEEEeCCC
Q 026538 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTI---NFFKLG---TKLCLVDLPG 147 (237)
Q Consensus 87 ~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~-------------~~~~~~~g~t~~~---~~~~~~---~~~~liDTpG 147 (237)
.|.++..++.|+-+...|||||..+|+...+. ..+...+|.|... .+++.+ +.+++|||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence 34466789999999999999999999865321 1122345666443 233333 7799999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHH
Q 026538 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 227 (237)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~ 227 (237)
+.+- ..++.+. ...|+++++|+|++++++.+...-+-..-+.+..+|.|+||+|+... +.++...+
T Consensus 135 HvDF--s~EVsRs-----------laac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a-dpe~V~~q 200 (650)
T KOG0462|consen 135 HVDF--SGEVSRS-----------LAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA-DPERVENQ 200 (650)
T ss_pred cccc--cceeheh-----------hhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC-CHHHHHHH
Confidence 8651 1122211 12299999999999999998877666666778999999999999643 34455555
Q ss_pred HHHHHH
Q 026538 228 IEEVIF 233 (237)
Q Consensus 228 l~~~l~ 233 (237)
+.+.+.
T Consensus 201 ~~~lF~ 206 (650)
T KOG0462|consen 201 LFELFD 206 (650)
T ss_pred HHHHhc
Confidence 555543
No 267
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.37 E-value=1.3e-12 Score=101.59 Aligned_cols=57 Identities=33% Similarity=0.545 Sum_probs=51.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~ 148 (237)
...+++++|.||+|||||+|+|++. ....+++.||+|+.......+..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 4579999999999999999999998 55788999999999888877778999999995
No 268
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.37 E-value=3.1e-12 Score=94.11 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=75.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-----cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.++.+|+|.+|+|||||+-.+.... ...+.+..+-.|..+.. ....+.||||+|. +.+..+..
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddt--Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq----------ErFrtits 75 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDT--FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ----------ERFRTITS 75 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcc--cccceEEEeeeeEEEEEeecCCcEEEEEEeecccH----------HHHHHHHH
Confidence 3577899999999999999888763 11121111112222221 2356899999993 45667777
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~~ 217 (237)
.|++. .+++++|+|...+-+... ..|++.+... .+|-++|+||.|...
T Consensus 76 tyyrg---thgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 76 TYYRG---THGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred HHccC---CceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc
Confidence 78776 899999999876543332 4666666653 578899999999864
No 269
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=5.7e-12 Score=116.09 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=91.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccccee-eccC---------------CCCceEE---EEEEEcC-CeEEEEeCCCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSD---------------KPGLTQT---INFFKLG-TKLCLVDLPGYG 149 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~-~~~~---------------~~g~t~~---~~~~~~~-~~~~liDTpG~~ 149 (237)
.+..+|.++|+..+|||||..+|+-..+.. .... .+|.|.. +..++.+ ..+++|||||+.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 456799999999999999998887432111 0001 1233332 2445554 899999999986
Q ss_pred CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
+- .. ...+.+..+|++++|+|+..++.++...+++++...++|.++++||+|.... +.....+++.
T Consensus 88 DF--t~-----------EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a-~~~~~~~~l~ 153 (697)
T COG0480 88 DF--TI-----------EVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA-DFYLVVEQLK 153 (697)
T ss_pred cc--HH-----------HHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc-ChhhhHHHHH
Confidence 51 11 1112222289999999999999999999999999999999999999998743 3444555555
Q ss_pred HHHH
Q 026538 230 EVIF 233 (237)
Q Consensus 230 ~~l~ 233 (237)
..+.
T Consensus 154 ~~l~ 157 (697)
T COG0480 154 ERLG 157 (697)
T ss_pred HHhC
Confidence 5544
No 270
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.36 E-value=1.6e-12 Score=107.79 Aligned_cols=83 Identities=25% Similarity=0.309 Sum_probs=60.4
Q ss_pred EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---C-----------------CeEEEEeCCCCCCcccc
Q 026538 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-----------------TKLCLVDLPGYGFAYAK 154 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~-----------------~~~~liDTpG~~~~~~~ 154 (237)
|+++|.||||||||+|+|++.. ..+++.|++|.+...... + ..+.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~--~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC--CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 5799999999999999999984 478888999977543211 1 14899999998754322
Q ss_pred hHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (237)
. ..+...++.....+|++++|+|+.
T Consensus 79 ~------~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 G------EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred h------hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 123345555555699999999874
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.36 E-value=1e-11 Score=115.74 Aligned_cols=122 Identities=23% Similarity=0.270 Sum_probs=82.0
Q ss_pred ecCCCCchhhHHHHHhccccee----------eccC------CCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHH
Q 026538 98 AGRSNVGKSSMLNALTRQWGVV----------RTSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVK 158 (237)
Q Consensus 98 vG~~~~GKSTLin~L~~~~~~~----------~~~~------~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~ 158 (237)
+|++|+|||||+++|+...+.. .+.+ .+|.|... .+...+..+.+|||||+.+ .
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~------~- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD------F- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH------H-
Confidence 5999999999999997543210 0111 13344333 3344578899999999743 1
Q ss_pred HHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
......++. .+|++++|+|++.+........+..+...++|+++|+||+|+... ......+.+++.++
T Consensus 74 ---~~~~~~~l~---~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~~l~~~l~ 141 (668)
T PRK12740 74 ---TGEVERALR---VLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA-DFFRVLAQLQEKLG 141 (668)
T ss_pred ---HHHHHHHHH---HhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHHC
Confidence 111122222 289999999999888777777778887888999999999998753 34455566665543
No 272
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=6.7e-12 Score=97.98 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=80.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeec-cCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~-~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.+.|+++|.++||||+|+-.|........+ +-.| -...+......+.++|.||+.. + ..-+..|+.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs~~~~LVD~PGH~r------l----R~kl~e~~~ 104 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGSENVTLVDLPGHSR------L----RRKLLEYLK 104 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecCcceEEEeCCCcHH------H----HHHHHHHcc
Confidence 368999999999999999887765211111 1111 0112333455589999999743 1 222334555
Q ss_pred ccccccEEEEEEeCCCCCChhH----HHHHHHHH-----hcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD----HELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY 234 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~----~~~~~~l~-----~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~ 234 (237)
....+-+|+||+|+..- ...- ..++..+. ...+|++++.||.|+......+.+.+.+++.+..
T Consensus 105 ~~~~akaiVFVVDSa~f-~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~ 176 (238)
T KOG0090|consen 105 HNYSAKAIVFVVDSATF-LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHK 176 (238)
T ss_pred ccccceeEEEEEecccc-chhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHH
Confidence 44558999999997632 2222 22233332 3367899999999998766666666777766654
No 273
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.35 E-value=1.2e-11 Score=106.68 Aligned_cols=114 Identities=27% Similarity=0.347 Sum_probs=84.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee--------------ccCCCCceE---EEEEEEcCCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--------------TSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~--------------~~~~~g~t~---~~~~~~~~~~~~liDTpG~~~~~~ 153 (237)
...+|+++.+...|||||+..|+.+.+... .....|.|. ...+.+.+..++++||||+.+ -
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD--F 81 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD--F 81 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC--c
Confidence 456999999999999999999997642111 011233442 234455688999999999865 2
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
..+++ ..+.. +|.+++++|+..+..++...+++..-..+.+.|+|+||+|...
T Consensus 82 GGEVE----Rvl~M-------VDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 82 GGEVE----RVLSM-------VDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPD 134 (603)
T ss_pred cchhh----hhhhh-------cceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCC
Confidence 22232 22222 8999999999999999999988888888999999999999874
No 274
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.35 E-value=3.6e-12 Score=109.10 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=63.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE--Ec-C-----------------CeEEEEeCCCCCCcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G-----------------TKLCLVDLPGYGFAY 152 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~-----------------~~~~liDTpG~~~~~ 152 (237)
++|+++|.||||||||+|+|++.. ..+++.|++|.+.... .. + ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 589999999999999999999984 6788999999776421 11 1 248999999987532
Q ss_pred cchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (237)
... ..+...++.....+|++++|+|+.
T Consensus 81 ~~g------~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKG------EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChH------HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 221 234455666666699999999975
No 275
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.6e-11 Score=90.25 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=73.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEE--cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...+++++|.+.+|||||+-+.++.......-..-|..-.+ .++. ...++.+|||+|.. .+..+...
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqE----------ryrtiTTa 89 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE----------RYRTITTA 89 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccch----------hhhHHHHH
Confidence 45699999999999999999999873211111111111111 1222 24678999999953 24566667
Q ss_pred HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
|++. ++++++++|....-+-. ...+.-++.. .+.|+|+|.||||+-++
T Consensus 90 yyRg---amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 90 YYRG---AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred Hhhc---cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc
Confidence 7776 99999999976431111 1233333332 37899999999998643
No 276
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.32 E-value=9.6e-12 Score=91.44 Aligned_cols=111 Identities=22% Similarity=0.302 Sum_probs=72.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
..+.++|-.++|||||+|.++......... .|..... ......+.+||.||... .+..|+ .|.
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmi----ptvGfnmrk~tkgnvtiklwD~gGq~r------frsmWe----ryc 86 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMI----PTVGFNMRKVTKGNVTIKLWDLGGQPR------FRSMWE----RYC 86 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhc----ccccceeEEeccCceEEEEEecCCCcc------HHHHHH----HHh
Confidence 488999999999999999988753222222 2333332 22357799999999542 333444 444
Q ss_pred hccccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCChHH
Q 026538 170 STRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~~~~ 220 (237)
+. +++++|++|++++ ++....++...+.. .++|+++++||.|+...-.
T Consensus 87 R~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~ 139 (186)
T KOG0075|consen 87 RG---VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS 139 (186)
T ss_pred hc---CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc
Confidence 44 9999999998863 22222333333332 4799999999999975433
No 277
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=4.7e-11 Score=88.40 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=76.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++++++|+.|.|||.|+..+.....-..++..-|..-...+... ..++.||||+|. +.+....+.
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ----------ErFRSVtRs 77 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ----------ERFRSVTRS 77 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccH----------HHHHHHHHH
Confidence 3579999999999999999999876321222333332222222333 356899999994 346677788
Q ss_pred HHhccccccEEEEEEeCCCCCChh-HHHHHHHHH---hcCCcEEEEEecCCCCChHHH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLME---RSQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~---~~~~piilv~NK~Dl~~~~~~ 221 (237)
|++. +.+.++|+|....-+.. ...|+...+ ..++-+++++||.|+-+..++
T Consensus 78 YYRG---AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V 132 (214)
T KOG0086|consen 78 YYRG---AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV 132 (214)
T ss_pred Hhcc---ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhh
Confidence 8877 78889999976432211 123333332 235668899999999765554
No 278
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.29 E-value=1.4e-11 Score=89.96 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=82.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
+.++|+++|-.|+|||||+..|.+. +.....+..|.......+.....+++||.-|... ++..|.. |+.
T Consensus 16 rEirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~------IRpyWsN----Yye 84 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRG------IRPYWSN----YYE 84 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeecCcEEEEEEecCCccc------cchhhhh----hhh
Confidence 4579999999999999999999998 5555566655544444445568899999999543 4444544 444
Q ss_pred ccccccEEEEEEeCCCC--CChhHHHHHHHH---HhcCCcEEEEEecCCCCChHHHHH
Q 026538 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVAR 223 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l---~~~~~piilv~NK~Dl~~~~~~~~ 223 (237)
+ .|.++||+|+.+. +.+...++.+.+ +-..+|+.+..||-|++.....++
T Consensus 85 n---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~ee 139 (185)
T KOG0074|consen 85 N---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEE 139 (185)
T ss_pred c---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHH
Confidence 4 9999999997652 222233333333 334789999999999985544433
No 279
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.28 E-value=2.3e-11 Score=98.50 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=56.0
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChh-----HHHHHHHHHhcCCcEEEEEec
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-----DHELISLMERSQTKYQVVLTK 212 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~-----~~~~~~~l~~~~~piilv~NK 212 (237)
..++|+||||..+......- ..++-..+.+.. .-+|+||+|+...-.+. -......+.+...|+++|+||
T Consensus 116 ~~~~liDTPGQIE~FtWSAs----GsIIte~lass~-ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK 190 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSAS----GSIITETLASSF-PTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNK 190 (366)
T ss_pred cCEEEEcCCCceEEEEecCC----ccchHhhHhhcC-CeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEec
Confidence 34899999997653222111 122222232222 57789999976533222 245567778889999999999
Q ss_pred CCCCChHHHHHHHHHHHH
Q 026538 213 TDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 213 ~Dl~~~~~~~~~~~~l~~ 230 (237)
+|+.+.+-..++...+++
T Consensus 191 ~Dv~d~~fa~eWm~DfE~ 208 (366)
T KOG1532|consen 191 TDVSDSEFALEWMTDFEA 208 (366)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999987766666655544
No 280
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=9.5e-12 Score=95.13 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=77.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
...+|+++|--|+||||++..|-..+ .....+.-|...+... ..+..+.+||.-|... .+..| +.|+.
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E-~vttvPTiGfnVE~v~-ykn~~f~vWDvGGq~k------~R~lW----~~Y~~ 83 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTVPTIGFNVETVE-YKNISFTVWDVGGQEK------LRPLW----KHYFQ 83 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCC-cccCCCccccceeEEE-EcceEEEEEecCCCcc------cccch----hhhcc
Confidence 44699999999999999999988773 2333343343333222 2388899999999532 33333 44554
Q ss_pred ccccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCChHH
Q 026538 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~~~~ 220 (237)
. .+++|||+|+++. +.+...++.+.+.. .+.|+++..||.|+...-.
T Consensus 84 ~---t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als 135 (181)
T KOG0070|consen 84 N---TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS 135 (181)
T ss_pred C---CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC
Confidence 4 8999999999863 33333444444443 3689999999999874433
No 281
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.26 E-value=9.1e-12 Score=106.05 Aligned_cols=60 Identities=35% Similarity=0.557 Sum_probs=54.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~ 151 (237)
...+++++|.||+|||||||+|++. ..+.+++.||+|+..++...+..+.|+||||+..+
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~ 190 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPP 190 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCCC
Confidence 3468999999999999999999999 56889999999999999999889999999998654
No 282
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.25 E-value=1.7e-11 Score=92.24 Aligned_cols=55 Identities=38% Similarity=0.536 Sum_probs=48.6
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCC
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG 149 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~ 149 (237)
+++++|.+|+|||||+|+|++. ....++..+|+|++......+..+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK-KKVSVSATPGKTKHFQTIFLTPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCcccceEEEEeCCCEEEEECCCcC
Confidence 8999999999999999999998 445788889999988877777789999999975
No 283
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.25 E-value=2.6e-11 Score=105.79 Aligned_cols=85 Identities=22% Similarity=0.213 Sum_probs=61.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---------------------------cCCeEEEEeC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL 145 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---------------------------~~~~~~liDT 145 (237)
++|+++|.||+|||||+|+|++.. ..+++.+++|.+..... ....+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 589999999999999999999884 45678888887654311 1245789999
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (237)
Q Consensus 146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (237)
||+....... ..+...++.....+|++++|+|++
T Consensus 80 aGl~~ga~~g------~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEG------RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9986532111 133445555555599999999986
No 284
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.24 E-value=2.6e-11 Score=101.89 Aligned_cols=62 Identities=34% Similarity=0.604 Sum_probs=54.5
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcc
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~ 152 (237)
....+++++|.||+|||||+|+|++. ....+++.||+|++..+...+..+.++||||+..+.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 34578999999999999999999998 556789999999999888888889999999987653
No 285
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.23 E-value=2.1e-11 Score=93.19 Aligned_cols=58 Identities=34% Similarity=0.487 Sum_probs=50.4
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~ 148 (237)
....+++++|.+|+|||||+|+|++. ....++..+++|++......+..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 35679999999999999999999998 33567888999999888777788999999995
No 286
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.23 E-value=1.8e-11 Score=96.72 Aligned_cols=57 Identities=35% Similarity=0.475 Sum_probs=48.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccc-------eeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWG-------VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~-------~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~ 148 (237)
...++++|.+|+|||||+|+|++... ...++..||+|++......+..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 35899999999999999999998531 1356788999999988877767999999996
No 287
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.23 E-value=3.9e-11 Score=85.97 Aligned_cols=116 Identities=20% Similarity=0.199 Sum_probs=75.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
.+++++|..|+|||||+++|-|..- . +-.|+.+.+...+ .+||||-.. . . ..+..+.+...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~-l-----ykKTQAve~~d~~----~IDTPGEy~---~--~----~~~Y~aL~tt~ 62 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT-L-----YKKTQAVEFNDKG----DIDTPGEYF---E--H----PRWYHALITTL 62 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh-h-----hcccceeeccCcc----ccCCchhhh---h--h----hHHHHHHHHHh
Confidence 4899999999999999999999841 1 1135555554332 499999321 0 1 12233334445
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
.++|++++|-.+.++.+.....+.. -...|+|-|++|+|+.+..++......+.+
T Consensus 63 ~dadvi~~v~~and~~s~f~p~f~~---~~~k~vIgvVTK~DLaed~dI~~~~~~L~e 117 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPPGFLD---IGVKKVIGVVTKADLAEDADISLVKRWLRE 117 (148)
T ss_pred hccceeeeeecccCccccCCccccc---ccccceEEEEecccccchHhHHHHHHHHHH
Confidence 5589999998877654433322222 224679999999999987777766665554
No 288
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.9e-10 Score=94.87 Aligned_cols=130 Identities=21% Similarity=0.280 Sum_probs=92.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc-----ceeeccCCCCceEEEEEEEc------------CCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKL------------GTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~~g~t~~~~~~~~------------~~~~~liDTpG~~~~~~ 153 (237)
-..++.++|...+|||||..+|..-. +....+..+|.|.|.-+... ...++++|+||+.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---- 81 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---- 81 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH----
Confidence 34699999999999999999997542 11233445667777644321 2347999999974
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
.+++..+....-.|..++|+|+..+.+.+..+.+-.-.......++|+||+|.+++.+....++.+...++
T Consensus 82 ---------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~ 152 (522)
T KOG0461|consen 82 ---------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVR 152 (522)
T ss_pred ---------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHH
Confidence 45666666555589999999999888887766554444445678999999999988776665555554443
No 289
>PRK13768 GTPase; Provisional
Probab=99.20 E-value=1.2e-10 Score=96.08 Aligned_cols=84 Identities=25% Similarity=0.282 Sum_probs=53.7
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHH-----hcCCcEEEEEec
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTK 212 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-----~~~~piilv~NK 212 (237)
..+.+|||||..+... ....+..+.+.... .. .+++++|+|+.......+.....++. ..++|+++|+||
T Consensus 97 ~~~~~~d~~g~~~~~~---~~~~~~~~~~~l~~-~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELFA---FRESGRKLVERLSG-SS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHHh---hhHHHHHHHHHHHh-cC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 4699999999654221 12223333333222 22 78999999998766666644433332 468999999999
Q ss_pred CCCCChHHHHHHHH
Q 026538 213 TDTVFPIDVARRAM 226 (237)
Q Consensus 213 ~Dl~~~~~~~~~~~ 226 (237)
+|+.+..+......
T Consensus 172 ~D~~~~~~~~~~~~ 185 (253)
T PRK13768 172 ADLLSEEELERILK 185 (253)
T ss_pred HhhcCchhHHHHHH
Confidence 99987766554444
No 290
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.19 E-value=4e-10 Score=94.32 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=86.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccce---------eecc----------------------CCCCceEEEEEEE---c
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTS----------------------DKPGLTQTINFFK---L 136 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~---------~~~~----------------------~~~g~t~~~~~~~---~ 136 (237)
...+++-+|...-||||||-+|+-..+. ...+ ...|.|.|+.+.. .
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 3468999999999999999999853210 0001 1234777775543 3
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 215 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl 215 (237)
..+|.+.||||+. ++.+........||+.++++|+..++.++.....-...-.+++ +++.+||+||
T Consensus 85 KRkFIiADTPGHe-------------QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTPGHE-------------QYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCCcHH-------------HHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence 6779999999973 3455555555569999999999999888776544444444554 8889999999
Q ss_pred CCh--HHHHHHHHHHHH
Q 026538 216 VFP--IDVARRAMQIEE 230 (237)
Q Consensus 216 ~~~--~~~~~~~~~l~~ 230 (237)
++- +-..++..++..
T Consensus 152 vdy~e~~F~~I~~dy~~ 168 (431)
T COG2895 152 VDYSEEVFEAIVADYLA 168 (431)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 853 333344444443
No 291
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.18 E-value=4.9e-11 Score=99.69 Aligned_cols=60 Identities=32% Similarity=0.536 Sum_probs=52.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~ 151 (237)
...+++++|.||+|||||+|+|.+. ....++..||+|+.......+..+.++||||+..+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCcccC
Confidence 4578999999999999999999988 55678899999999988887778999999998554
No 292
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=5.3e-10 Score=96.18 Aligned_cols=126 Identities=22% Similarity=0.334 Sum_probs=100.8
Q ss_pred EEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.|+..|....|||||+.++.+.. +..+.....|+|.|+.+++. +..+.++|.||+. +++...+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~-------------~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHP-------------DFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcH-------------HHHHHHH
Confidence 47788999999999999999873 22334556889999988775 5679999999984 3455555
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcE-EEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pi-ilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
......|..++|||+..++..+..+.+..+...+++- ++|+||+|+.++..++...+++.+.+
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l 132 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADL 132 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhc
Confidence 5666689999999999999999999999998888774 99999999998877666666655543
No 293
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=5.5e-10 Score=98.75 Aligned_cols=135 Identities=19% Similarity=0.266 Sum_probs=91.3
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccc-----------------------------eeeccCCCCceEEEEE---EEcC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINF---FKLG 137 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~-----------------------------~~~~~~~~g~t~~~~~---~~~~ 137 (237)
.....++++|...+|||||+..|+-.-+ ........|.|.++.. ....
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 3556889999999999999988873210 0111224556666532 2235
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-----CC--hhHHHHHHHHHhcCCc-EEEE
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----VK--PRDHELISLMERSQTK-YQVV 209 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-----~~--~~~~~~~~~l~~~~~p-iilv 209 (237)
..++|+|+||+.+ ++...+.....+|+.++|+|++.+ +. .+..+....++..++. ++++
T Consensus 255 ~~~tliDaPGhkd-------------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qliva 321 (603)
T KOG0458|consen 255 KIVTLIDAPGHKD-------------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVA 321 (603)
T ss_pred eeEEEecCCCccc-------------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEE
Confidence 6799999999753 455555555669999999998753 22 2335666666666654 8899
Q ss_pred EecCCCC--ChHHHHHHHHHHHHHHHhhcC
Q 026538 210 LTKTDTV--FPIDVARRAMQIEEVIFYLCG 237 (237)
Q Consensus 210 ~NK~Dl~--~~~~~~~~~~~l~~~l~~~~g 237 (237)
+||+|++ +.+..+++...+...|...||
T Consensus 322 iNKmD~V~Wsq~RF~eIk~~l~~fL~~~~g 351 (603)
T KOG0458|consen 322 INKMDLVSWSQDRFEEIKNKLSSFLKESCG 351 (603)
T ss_pred eecccccCccHHHHHHHHHHHHHHHHHhcC
Confidence 9999998 455556666777766666655
No 294
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.15 E-value=1.8e-10 Score=91.34 Aligned_cols=113 Identities=14% Similarity=0.062 Sum_probs=70.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCC--ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG--LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g--~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
..+|+++|.+|+|||+|...+++........+... ..+.+........+.|+||+|..+ +..+...|+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~----------~~~~~~~~~ 72 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE----------FSAMRDLYI 72 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCccc----------ChHHHHHhh
Confidence 35899999999999999999888743222222221 122222322345678999999432 223444555
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~ 217 (237)
.. .++.++|++..+..+... ..+.+.+. ...+|+++|+||+|+..
T Consensus 73 ~~---~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 73 RN---GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred cc---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 55 688888888765433333 23333332 23589999999999975
No 295
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.6e-10 Score=85.63 Aligned_cols=111 Identities=17% Similarity=0.273 Sum_probs=73.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCC-CceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~-g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
-+++++|--|+|||||++.|-.. +...--+.- +|+....+ .+..++.+|.-|+.. .++.|.+....
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE~l~I--g~m~ftt~DLGGH~q------Arr~wkdyf~~---- 87 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSEELSI--GGMTFTTFDLGGHLQ------ARRVWKDYFPQ---- 87 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChHHhee--cCceEEEEccccHHH------HHHHHHHHHhh----
Confidence 48999999999999999999877 333322222 23333333 378899999999642 34556555444
Q ss_pred cccccEEEEEEeCCC--CCChhHHHHH---HHHHhcCCcEEEEEecCCCCChH
Q 026538 172 RVSLKRVCLLIDTKW--GVKPRDHELI---SLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~--~~~~~~~~~~---~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
+|++++++|+.+ .+.+...+.- ..-.-.++|+++..||+|.....
T Consensus 88 ---v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 88 ---VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred ---hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 999999999864 2333222211 11112479999999999987544
No 296
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.13 E-value=1.9e-10 Score=89.43 Aligned_cols=58 Identities=34% Similarity=0.617 Sum_probs=49.8
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~ 148 (237)
+..++++++|.+|+|||||+|+|++. ....++..+++|.....+..+..+.++||||+
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGK-KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence 34578999999999999999999998 44577888999999887776677999999996
No 297
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.13 E-value=2.6e-10 Score=85.47 Aligned_cols=113 Identities=25% Similarity=0.264 Sum_probs=74.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--------cCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--------~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (237)
.+++.++|++-+|||||+..++... .+..++ .|..+.++. ...++.+|||+|. +.+..
T Consensus 8 qfrlivigdstvgkssll~~ft~gk-faelsd---ptvgvdffarlie~~pg~riklqlwdtagq----------erfrs 73 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGK-FAELSD---PTVGVDFFARLIELRPGYRIKLQLWDTAGQ----------ERFRS 73 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCc-ccccCC---CccchHHHHHHHhcCCCcEEEEEEeeccch----------HHHHH
Confidence 3588999999999999999999873 333332 233322211 1356899999994 34678
Q ss_pred HHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-----cCCcEEEEEecCCCCChHHH
Q 026538 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~piilv~NK~Dl~~~~~~ 221 (237)
+.+.|+++ .-++++|+|.+..-+.+. ..|+....- ..+-+.+|+.|+|+....++
T Consensus 74 itksyyrn---svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV 134 (213)
T KOG0091|consen 74 ITKSYYRN---SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV 134 (213)
T ss_pred HHHHHhhc---ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc
Confidence 88899988 788999999775432222 333333322 12336789999999754433
No 298
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=2.2e-10 Score=99.17 Aligned_cols=130 Identities=22% Similarity=0.238 Sum_probs=86.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccce-------------eeccCCCCceEEEE-----EEE---cCCeEEEEeCCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTIN-----FFK---LGTKLCLVDLPGY 148 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~-------------~~~~~~~g~t~~~~-----~~~---~~~~~~liDTpG~ 148 (237)
.+..+..++.+...|||||..+|+...+. -.....+|.|...+ +.. ..+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 45678999999999999999999864210 01122455564432 221 1366899999998
Q ss_pred CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (237)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l 228 (237)
.+- .-++.+ .+ ..|.+.++|+|++.++..+...-+-..-..+.-++.|+||+||.. .+.++..+++
T Consensus 87 VDF--sYEVSR--------SL---AACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~-Adpervk~eI 152 (603)
T COG0481 87 VDF--SYEVSR--------SL---AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPA-ADPERVKQEI 152 (603)
T ss_pred cce--EEEehh--------hH---hhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCC-CCHHHHHHHH
Confidence 651 111111 11 129999999999999877765443334456788999999999964 3456677777
Q ss_pred HHHHH
Q 026538 229 EEVIF 233 (237)
Q Consensus 229 ~~~l~ 233 (237)
++.++
T Consensus 153 e~~iG 157 (603)
T COG0481 153 EDIIG 157 (603)
T ss_pred HHHhC
Confidence 77665
No 299
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4e-10 Score=82.34 Aligned_cols=116 Identities=15% Similarity=0.255 Sum_probs=74.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..+|+.+|-.++||||++-.|.-.. .+...|.+--.+. ....+..+++||.-|. +.++..|. .|+.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~---~~~~ipTvGFnvetVtykN~kfNvwdvGGq------d~iRplWr----hYy~ 83 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ---SVTTIPTVGFNVETVTYKNVKFNVWDVGGQ------DKIRPLWR----HYYT 83 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC---CcccccccceeEEEEEeeeeEEeeeeccCc------hhhhHHHH----hhcc
Confidence 3589999999999999999988762 2222322222222 2224678999999994 33555544 4554
Q ss_pred ccccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCChHHHHH
Q 026538 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVAR 223 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~~~~~~~ 223 (237)
. ..+++||+|+... +.+...++.+.+.. ...|+++..||-|+......++
T Consensus 84 g---tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqe 138 (180)
T KOG0071|consen 84 G---TQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQE 138 (180)
T ss_pred C---CceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHH
Confidence 4 7899999997653 22222344444433 2578999999999975443333
No 300
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.6e-10 Score=103.02 Aligned_cols=111 Identities=25% Similarity=0.419 Sum_probs=85.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEEc-------------------CCeEEEEeCCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-------------------GTKLCLVDLPGYG 149 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~~-------------------~~~~~liDTpG~~ 149 (237)
+.|.++|+|+..+|||-|+..+.+.+ ...+...|.|+.+- ++.. -+.+.+|||||+.
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tN--VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTN--VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccc--cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 46899999999999999999999874 44555566666652 2221 1348999999974
Q ss_pred CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
. |..+-.. ....||++++|+|..+++.++..+-++.++..+.|+|+++||+|.+
T Consensus 552 s----------FtnlRsr---gsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 552 S----------FTNLRSR---GSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred h----------hhhhhhc---cccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhh
Confidence 3 2222222 2223999999999999999999999999999999999999999985
No 301
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=5.5e-10 Score=99.93 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=85.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee---------cc------CCCCceEEE---EEE-E----cCCeEEEEeCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR---------TS------DKPGLTQTI---NFF-K----LGTKLCLVDLPG 147 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~---------~~------~~~g~t~~~---~~~-~----~~~~~~liDTpG 147 (237)
...+|+++|+-++|||+|+..|........ .. ..+|++... ... . ...-++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 457899999999999999999987631100 00 011111111 000 0 134589999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC------ChHHH
Q 026538 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------FPIDV 221 (237)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~------~~~~~ 221 (237)
+.. +..........+|++++|+|+..++.-....+++..-..+.|+++|+||+|++ ++...
T Consensus 207 HVn-------------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DA 273 (971)
T KOG0468|consen 207 HVN-------------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDA 273 (971)
T ss_pred ccc-------------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHH
Confidence 754 22222222233899999999999999888889988888899999999999974 45554
Q ss_pred HHHHHHHHHHH
Q 026538 222 ARRAMQIEEVI 232 (237)
Q Consensus 222 ~~~~~~l~~~l 232 (237)
...+..+...+
T Consensus 274 Y~KLrHii~~i 284 (971)
T KOG0468|consen 274 YYKLRHIIDEI 284 (971)
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 302
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=7.7e-11 Score=89.54 Aligned_cols=116 Identities=19% Similarity=0.173 Sum_probs=73.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccce---eeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---VRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~---~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++++++|..++||||+|.+.+..-.. ...-......+++.....+..+.+|||+|.. .+..+..+
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqe----------EfDaItkA 88 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQE----------EFDAITKA 88 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccch----------hHHHHHHH
Confidence 3479999999999999999999965110 0000111112222333335667899999953 35667788
Q ss_pred HHhccccccEEEEEEeCCCCCCh-hHHHHHHHHHh--cCCcEEEEEecCCCCChH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMER--SQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~--~~~piilv~NK~Dl~~~~ 219 (237)
|++. +.+.++|+...+..+. ...+|.+.+.. ..+|.++|-||+|+++..
T Consensus 89 yyrg---aqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 89 YYRG---AQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred Hhcc---ccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhh
Confidence 8877 7777778766543222 22344444433 369999999999998543
No 303
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.3e-09 Score=98.84 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=89.6
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCc---------------eEEE---EEEEcCCeEEEEeCCCCCCc
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---------------TQTI---NFFKLGTKLCLVDLPGYGFA 151 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~---------------t~~~---~~~~~~~~~~liDTpG~~~~ 151 (237)
.+..++.++.+...|||||...|+..++ .+.+..+|. |... .....+..+++||+||+.+-
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asng-vis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNG-VISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhcc-EechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 4667999999999999999999998753 333344443 2221 12223677999999998751
Q ss_pred ccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCC------CChHHHHHHH
Q 026538 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT------VFPIDVARRA 225 (237)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl------~~~~~~~~~~ 225 (237)
...+... ..-+|+.++++|+..++..+...++++....+..+++|+||+|. +.+.+....+
T Consensus 86 ----------~sevssa---s~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l 152 (887)
T KOG0467|consen 86 ----------SSEVSSA---SRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHL 152 (887)
T ss_pred ----------hhhhhhh---hhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHH
Confidence 1112211 12289999999999999999999999888888999999999994 3455544443
Q ss_pred HHHHH
Q 026538 226 MQIEE 230 (237)
Q Consensus 226 ~~l~~ 230 (237)
-.+-+
T Consensus 153 ~r~i~ 157 (887)
T KOG0467|consen 153 LRVIE 157 (887)
T ss_pred HHHHH
Confidence 33333
No 304
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.09 E-value=8.8e-10 Score=97.49 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=72.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCC-CCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~-~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..+|+++|..|+||||||-+|+..+....+.+. +.++....+.....+..++||+.-.+ . ......-++.
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~--~----~~~l~~Eirk--- 79 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSD--D----RLCLRKEIRK--- 79 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccc--h----hHHHHHHHhh---
Confidence 469999999999999999999998533333322 22333344445567799999985321 1 1111111222
Q ss_pred ccccccEEEEEEeCCCC--CChhHHHHHHHHHh-----cCCcEEEEEecCCCCC
Q 026538 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER-----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~ 217 (237)
+|+|+++....+. +......|+-.++. .++|+|+|+||+|...
T Consensus 80 ----A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 80 ----ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred ----cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 8999999876542 22333456665554 3689999999999874
No 305
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.08 E-value=1.5e-09 Score=103.96 Aligned_cols=100 Identities=24% Similarity=0.374 Sum_probs=72.2
Q ss_pred CchhhHHHHHhcccceeeccCCCCceEEEEEEEc--C-------------------CeEEEEeCCCCCCcccchHHHHHH
Q 026538 103 VGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--G-------------------TKLCLVDLPGYGFAYAKEEVKDAW 161 (237)
Q Consensus 103 ~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~-------------------~~~~liDTpG~~~~~~~~~~~~~~ 161 (237)
++||||+.+|.+.+ .......|.|+++-.+.. . +.+.+|||||+.. +
T Consensus 472 ~~KTtLLD~iR~t~--v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~----------F 539 (1049)
T PRK14845 472 VHNTTLLDKIRKTR--VAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA----------F 539 (1049)
T ss_pred cccccHHHHHhCCC--cccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH----------H
Confidence 35999999999884 233444567777633221 0 2389999999642 1
Q ss_pred HHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
..+.... ...+|++++|+|++.++..+..+.+..+...++|+++|+||+|+.+
T Consensus 540 ~~lr~~g---~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRG---GSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhh---cccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcc
Confidence 2222221 2338999999999988888888888888888999999999999964
No 306
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.1e-10 Score=97.20 Aligned_cols=86 Identities=23% Similarity=0.260 Sum_probs=65.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---------------------CCeEEEEeCCCCCC
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---------------------GTKLCLVDLPGYGF 150 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---------------------~~~~~liDTpG~~~ 150 (237)
.+++.|||.||||||||+|+++... +...++|.+|-+.+.... ..++.++|.+|+..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 3689999999999999999999984 677899999987643210 23488999999865
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (237)
..+.. +.+-..|+.+.+++|+|++|+|++
T Consensus 80 GAs~G------eGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 80 GASKG------EGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred CcccC------CCcchHHHHhhhhcCeEEEEEEec
Confidence 43332 234556666667799999999976
No 307
>PRK12289 GTPase RsgA; Reviewed
Probab=99.08 E-value=2.9e-10 Score=97.72 Aligned_cols=57 Identities=33% Similarity=0.486 Sum_probs=45.7
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCC-------ceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA 151 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-------~t~~~~~~~~~~~~~liDTpG~~~~ 151 (237)
.++|+|.||||||||||+|++.. ...++..++ ||++...+.......|+||||+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~-~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV-ELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc-ccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccc
Confidence 57999999999999999999873 344555555 8888888876444589999999764
No 308
>PRK13796 GTPase YqeH; Provisional
Probab=99.08 E-value=2.2e-10 Score=99.31 Aligned_cols=58 Identities=31% Similarity=0.412 Sum_probs=48.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc----ceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~----~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~ 150 (237)
..++++|.+|||||||+|+|++.. ....++..||||++...+..+....++||||+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence 489999999999999999998642 2355789999999998877766679999999853
No 309
>PRK12288 GTPase RsgA; Reviewed
Probab=99.07 E-value=4.3e-10 Score=96.57 Aligned_cols=71 Identities=28% Similarity=0.338 Sum_probs=50.2
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCC-------ceEEEEEEEcCCeEEEEeCCCCCCcc----cchHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFAY----AKEEVKDAWE 162 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-------~t~~~~~~~~~~~~~liDTpG~~~~~----~~~~~~~~~~ 162 (237)
.++|+|.||||||||+|+|++.. ...++..++ ||+...++..+....|+||||+.+-. ..+++...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~-~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ 285 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA-EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFV 285 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc-ceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhH
Confidence 57999999999999999999874 234444332 78888877765456799999987631 2244555555
Q ss_pred HHH
Q 026538 163 ELV 165 (237)
Q Consensus 163 ~~~ 165 (237)
++.
T Consensus 286 ei~ 288 (347)
T PRK12288 286 EFR 288 (347)
T ss_pred HHH
Confidence 543
No 310
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.06 E-value=1.1e-10 Score=88.96 Aligned_cols=59 Identities=29% Similarity=0.337 Sum_probs=39.9
Q ss_pred CEEEEecCCCCchhhHHHHHhccccee--ecc----CCCCceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVV--RTS----DKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~--~~~----~~~g~t~~~~~~~~~~~~~liDTpG~~~~ 151 (237)
..++++|++|||||||+|+|++..... .++ ....||+....+.......|+||||+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcc
Confidence 589999999999999999999873211 111 22347777777777777999999998663
No 311
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=3.1e-09 Score=87.13 Aligned_cols=130 Identities=20% Similarity=0.269 Sum_probs=91.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc--------------ceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~--------------~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~ 153 (237)
...+|..+|.-+.|||||.-+|+... +.++-....|.|... .+...+..+..+|+||+.+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD--- 87 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD--- 87 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH---
Confidence 34699999999999999999987531 001112234555443 3444467789999999743
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHHH-HHHHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARR-AMQIEEV 231 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~~-~~~l~~~ 231 (237)
+++..+......|+.++|+.+.++..++..+.+-..+..++| +++++||+|+++..++.+. ..++++.
T Consensus 88 ----------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreL 157 (394)
T COG0050 88 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVREL 157 (394)
T ss_pred ----------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence 344444444458999999999999889888877777778887 6778999999986666554 3455555
Q ss_pred HH
Q 026538 232 IF 233 (237)
Q Consensus 232 l~ 233 (237)
+.
T Consensus 158 Ls 159 (394)
T COG0050 158 LS 159 (394)
T ss_pred HH
Confidence 54
No 312
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.06 E-value=5.9e-10 Score=85.17 Aligned_cols=57 Identities=37% Similarity=0.567 Sum_probs=48.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~ 148 (237)
...+++++|.+|+|||||+|+|.+. ....+++.+|+|....+...+..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 3468899999999999999999987 44567788889988877777778999999995
No 313
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.05 E-value=2e-10 Score=85.54 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=73.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee-cc--CCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-TS--DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-~~--~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
-.++++++|..-+|||||+-+.+....... .+ .....++.+........+.||||+|.. .|..+-.-
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQE----------rfHALGPI 81 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQE----------RFHALGPI 81 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchH----------hhhccCce
Confidence 347999999999999999988776521000 00 011133444444445669999999942 34445555
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCChH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~~ 219 (237)
|++. .+++++|+|..+.-+.+. ..|...++. ..+-+++|+||+|+-.+.
T Consensus 82 YYRg---SnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR 134 (218)
T KOG0088|consen 82 YYRG---SNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEER 134 (218)
T ss_pred EEeC---CCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhh
Confidence 5655 899999999875422222 345444443 356789999999985443
No 314
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.04 E-value=2.6e-10 Score=99.48 Aligned_cols=59 Identities=39% Similarity=0.620 Sum_probs=54.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~ 151 (237)
..+|.+||+|||||||+||+|.|. ....++.+||.|++.+.......+.|.|+||+..+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFP 372 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCcccc
Confidence 578999999999999999999999 56789999999999999999999999999998665
No 315
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=4.4e-09 Score=77.02 Aligned_cols=111 Identities=18% Similarity=0.173 Sum_probs=73.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC------ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG------LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g------~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
..++..++|..|+|||.|+..+.... ...+.|. -|+-+.......++.+|||+|. +.+...
T Consensus 10 yifkyiiigdmgvgkscllhqftekk---fmadcphtigvefgtriievsgqkiklqiwdtagq----------erfrav 76 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKK---FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ----------ERFRAV 76 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHH---HhhcCCcccceecceeEEEecCcEEEEEEeecccH----------HHHHHH
Confidence 45788999999999999999998773 2333332 2333333333567899999994 335566
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCC
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVF 217 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~ 217 (237)
.+.|++. +.+.++|.|....-+... ..|+...+.. +..++++.||+|+-.
T Consensus 77 trsyyrg---aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 77 TRSYYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred HHHHhcc---ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 7777776 788889999765433322 2344333332 344788999999854
No 316
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.1e-09 Score=81.44 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=74.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccc----eeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~----~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
...|+|+|.-|+|||||+-++-.... ....+.+. +|...+... .+.++.+||.-|. +..+..|..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~-~tvgLnig~i~v~~~~l~fwdlgGQ------e~lrSlw~~- 88 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKIT-PTVGLNIGTIEVCNAPLSFWDLGGQ------ESLRSLWKK- 88 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHee-cccceeecceeeccceeEEEEcCCh------HHHHHHHHH-
Confidence 35899999999999999988765420 01111111 222222211 2677999999983 334444544
Q ss_pred HHHHHhccccccEEEEEEeCCCC--CChhHHHHHHHH---HhcCCcEEEEEecCCCCChHHHHHHH
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRA 225 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l---~~~~~piilv~NK~Dl~~~~~~~~~~ 225 (237)
|+.. +++++|++|+.++ +......+-+.+ ...++|+++.+||-|+-+..+..++.
T Consensus 89 ---yY~~---~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~ 148 (197)
T KOG0076|consen 89 ---YYWL---AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELD 148 (197)
T ss_pred ---HHHH---hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHH
Confidence 4444 9999999999863 222222222222 22489999999999997766655543
No 317
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.99 E-value=4.9e-09 Score=77.82 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=73.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc------CCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~------~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
..-+|+++|.-++|||+++..|+-.+. ........|-.|+-.... ...+.|.||+|+... . .++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~-~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~--~-------~eL 77 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNH-VPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG--Q-------QEL 77 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccC-CCCCccccchhhheeEeeecCCChhheEEEeecccccCc--h-------hhh
Confidence 446899999999999999988775532 222333333333322221 345899999998652 1 234
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhHHHHHH-HHHh----cCCcEEEEEecCCCCChHHH
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMER----SQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~-~l~~----~~~piilv~NK~Dl~~~~~~ 221 (237)
-+.|+.. +|+.++|+++.+.-+.+-.+.++ ++.. ..+|++++.||+|+.++.+.
T Consensus 78 prhy~q~---aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v 136 (198)
T KOG3883|consen 78 PRHYFQF---ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREV 136 (198)
T ss_pred hHhHhcc---CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhc
Confidence 4555554 89999999876532222222222 2222 25899999999999755543
No 318
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.98 E-value=2e-09 Score=87.86 Aligned_cols=76 Identities=24% Similarity=0.275 Sum_probs=34.8
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH-----HHHHHHHhcCCcEEEEEecC
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-----ELISLMERSQTKYQVVLTKT 213 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-----~~~~~l~~~~~piilv~NK~ 213 (237)
.+.|+||||..+-... ......++ ..+.. ...-++++++|+...-.+... ..+..+.+.+.|.+.|+||+
T Consensus 92 ~y~l~DtPGQiElf~~---~~~~~~i~-~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH---SDSGRKIV-ERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHHH---SHHHHHHH-HTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred cEEEEeCCCCEEEEEe---chhHHHHH-HHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence 5999999995431100 01111111 11222 224578899998754333221 11222334689999999999
Q ss_pred CCCChH
Q 026538 214 DTVFPI 219 (237)
Q Consensus 214 Dl~~~~ 219 (237)
|+.++.
T Consensus 167 Dl~~~~ 172 (238)
T PF03029_consen 167 DLLSKY 172 (238)
T ss_dssp GGS-HH
T ss_pred Ccccch
Confidence 999744
No 319
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.97 E-value=1.1e-09 Score=89.98 Aligned_cols=70 Identities=29% Similarity=0.427 Sum_probs=48.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccC-------CCCceEEEEEEEcCCeEEEEeCCCCCCc----ccchHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGFA----YAKEEVKDAW 161 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-------~~g~t~~~~~~~~~~~~~liDTpG~~~~----~~~~~~~~~~ 161 (237)
..++++|.+|||||||+|+|++... ..++. ...||++...+..+ ...|+||||+... ...+++...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~-~~t~~i~~~~~~G~hTT~~~~l~~l~-~~~liDtPG~~~~~l~~~~~~~~~~~f 198 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK-QQVNDISSKLGLGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGF 198 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh-ccccceeccCCCCCCcCCceEEEEcC-CcEEEeCCCccccCCCCCCHHHHHHhC
Confidence 4789999999999999999998732 22222 23488888777663 4589999998763 2224455555
Q ss_pred HHH
Q 026538 162 EEL 164 (237)
Q Consensus 162 ~~~ 164 (237)
.++
T Consensus 199 ~e~ 201 (245)
T TIGR00157 199 VEF 201 (245)
T ss_pred HHH
Confidence 553
No 320
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.97 E-value=1.3e-09 Score=90.83 Aligned_cols=87 Identities=23% Similarity=0.251 Sum_probs=65.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--------------------CCeEEEEeCCCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF 150 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------------~~~~~liDTpG~~~ 150 (237)
+.+++.|||.||+|||||+|+|+... +...+.|.+|.+.+.... ...+.++|.+|+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~--a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSK--AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCC--CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 45699999999999999999999984 448889999988754331 23489999999865
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (237)
..+.. ..+-..|+.....+|+++.|+++.
T Consensus 97 GAs~G------~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAG------EGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred CcccC------cCchHHHHHhhhhccceeEEEEec
Confidence 43222 134445566666699999999865
No 321
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.6e-09 Score=80.89 Aligned_cols=116 Identities=16% Similarity=0.085 Sum_probs=69.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeecc---CCCCceEEEEEEEc---------CCeEEEEeCCCCCCcccchHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKL---------GTKLCLVDLPGYGFAYAKEEVKDA 160 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~---~~~g~t~~~~~~~~---------~~~~~liDTpG~~~~~~~~~~~~~ 160 (237)
++.+.+|.+|+||||++-..+......... .+....+.+.+... ...+.+|||+|. +.
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ----------ER 79 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ----------ER 79 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH----------HH
Confidence 567889999999999997776542111000 00111111222111 134789999994 34
Q ss_pred HHHHHHHHHhccccccEEEEEEeCCCCCCh-hHHHHHHHHHhc----CCcEEEEEecCCCCChHHH
Q 026538 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS----QTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~----~~piilv~NK~Dl~~~~~~ 221 (237)
+..+..+|++. +-+.++++|....-+. ....|+.+++.+ +.-+++++||+|+.+...+
T Consensus 80 FRSLTTAFfRD---AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V 142 (219)
T KOG0081|consen 80 FRSLTTAFFRD---AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV 142 (219)
T ss_pred HHHHHHHHHHh---hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh
Confidence 56667777765 7788889996532222 224566666543 3458999999999765544
No 322
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=8.7e-09 Score=92.76 Aligned_cols=71 Identities=10% Similarity=0.223 Sum_probs=50.0
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
..+.++|.||+.-.... ...+..+.. ++|++|||+.+...++....+++......+..+.++.||+|...
T Consensus 206 nDivliDsPGld~~se~-------tswid~~cl---daDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 206 NDIVLIDSPGLDVDSEL-------TSWIDSFCL---DADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFILNNKWDASA 275 (749)
T ss_pred ccceeccCCCCCCchhh-------hHHHHHHhh---cCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEEechhhhhc
Confidence 35899999998642111 122222222 29999999999888888888888877776556788889999864
Q ss_pred h
Q 026538 218 P 218 (237)
Q Consensus 218 ~ 218 (237)
.
T Consensus 276 s 276 (749)
T KOG0448|consen 276 S 276 (749)
T ss_pred c
Confidence 3
No 323
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.95 E-value=2.8e-09 Score=88.05 Aligned_cols=131 Identities=21% Similarity=0.251 Sum_probs=81.0
Q ss_pred CCChhhhHHHHHhhcCCCcceEEeecccccccCCCCCC-----------CCCCChhHHHHHHHhhhh---hhhHHHHhhh
Q 026538 17 QPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDN-----------IPFSTSSERERIEENIFR---NKLEFFAAAK 82 (237)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~-----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 82 (237)
-|+++++..|++.+....++|.++++.+ ..+.+. .....-.+.......... +.+..+...-
T Consensus 58 iPLssrn~~~~~~~~~k~riiVlNK~DL----ad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l 133 (335)
T KOG2485|consen 58 IPLSSRNELFQDFLPPKPRIIVLNKMDL----ADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEEL 133 (335)
T ss_pred cCCccccHHHHHhcCCCceEEEEecccc----cCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHH
Confidence 4777999999999999999999998642 221111 000000111111110000 1111111111
Q ss_pred ccCCCCCCCCCEEEEecCCCCchhhHHHHHhcc----cceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCc
Q 026538 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFA 151 (237)
Q Consensus 83 ~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~----~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~ 151 (237)
.+..+..+..+.+.|+|-||+|||||+|++... ...+.+...||.|+.+.. +.....+.++||||+.-+
T Consensus 134 ~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 134 VRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred HHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 222222356789999999999999999998642 256788999999998853 334677999999998655
No 324
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=9.9e-09 Score=90.74 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=81.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..+.|+++|+||+|||||+.+|.....-...+...|...- .......++++.+|.- +..++.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv--vsgK~RRiTflEcp~D------------l~~miD---- 129 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV--VSGKTRRITFLECPSD------------LHQMID---- 129 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE--eecceeEEEEEeChHH------------HHHHHh----
Confidence 3445679999999999999999876311122333322111 1112456888888841 112221
Q ss_pred ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHH-HHHHHHHHHHH
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEEV 231 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~-~~~~~~~l~~~ 231 (237)
...-+|+|++++|+..++.-...+++..+..++.| ++-|+|..|+..... +......++..
T Consensus 130 vaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhR 192 (1077)
T COG5192 130 VAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHR 192 (1077)
T ss_pred HHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhh
Confidence 11228999999999999999999999999999988 566999999985443 33444444443
No 325
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.90 E-value=1.5e-08 Score=99.74 Aligned_cols=152 Identities=17% Similarity=0.180 Sum_probs=87.3
Q ss_pred hHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeec-------cCCCCceEEEEE
Q 026538 61 SERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------SDKPGLTQTINF 133 (237)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~-------~~~~g~t~~~~~ 133 (237)
.+...+..++ +..+..+...+...+......|..+|+|++|+||||+|+.- |... ... ....+.|+++.+
T Consensus 81 ~~~~~l~~~~-~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~c~w 157 (1169)
T TIGR03348 81 AEIRELRARF-NEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRNCDW 157 (1169)
T ss_pred HHHHHHHHHH-HHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcccce
Confidence 3444444433 33444444333222333457799999999999999999865 3311 110 111234556555
Q ss_pred EEcCCeEEEEeCCCCCCcc--cchHHHHHHHHHHHHHHhc--cccccEEEEEEeCCCCCChhH---H-------HHHHHH
Q 026538 134 FKLGTKLCLVDLPGYGFAY--AKEEVKDAWEELVKEYVST--RVSLKRVCLLIDTKWGVKPRD---H-------ELISLM 199 (237)
Q Consensus 134 ~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~d~v~~vvd~~~~~~~~~---~-------~~~~~l 199 (237)
.. ....+++||+|..-.. ..+.-...|..++....+. ....++||+++|..+-+.... . .-+..+
T Consensus 158 wf-~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el 236 (1169)
T TIGR03348 158 WF-TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQEL 236 (1169)
T ss_pred Ee-cCCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 43 4457899999943211 1122345577777654443 344899999999765332211 1 111222
Q ss_pred H---hcCCcEEEEEecCCCC
Q 026538 200 E---RSQTKYQVVLTKTDTV 216 (237)
Q Consensus 200 ~---~~~~piilv~NK~Dl~ 216 (237)
. ....||++|+||||++
T Consensus 237 ~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 237 REQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHhCCCCCEEEEEecchhh
Confidence 2 2378999999999987
No 326
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.90 E-value=3.1e-08 Score=80.30 Aligned_cols=89 Identities=19% Similarity=0.102 Sum_probs=58.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc-ceeeccCCCCceEEEEEEEc------CCeEEEEeCCCCCCcccch-HHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKE-EVKDAWE 162 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~-~~~~~~~~~g~t~~~~~~~~------~~~~~liDTpG~~~~~~~~-~~~~~~~ 162 (237)
+...|+++|++++|||||+|.|++.. ..........+|+.+-.... +..+.++||||+.+....+ .......
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 44578999999999999999999982 33444455678887654432 4679999999998753322 1111111
Q ss_pred HHHHHHHhccccccEEEEEEeCC
Q 026538 163 ELVKEYVSTRVSLKRVCLLIDTK 185 (237)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~ 185 (237)
.+. .. -+++++|.++..
T Consensus 86 ~l~-----~l-lss~~i~n~~~~ 102 (224)
T cd01851 86 ALA-----TL-LSSVLIYNSWET 102 (224)
T ss_pred HHH-----HH-HhCEEEEeccCc
Confidence 111 00 168888888765
No 327
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.89 E-value=3.1e-08 Score=84.44 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=46.5
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+..+.|+||+|.+... . .... .+|.++++++...+ .+...... ......-++|+||+|+.
T Consensus 148 g~d~viieT~Gv~qs~--~-------~i~~-------~aD~vlvv~~p~~g---d~iq~~k~-gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 148 GYDVILVETVGVGQSE--T-------AVAG-------MVDFFLLLQLPGAG---DELQGIKK-GIMELADLIVINKADGD 207 (332)
T ss_pred CCCEEEEECCCCccch--h-------HHHH-------hCCEEEEEecCCch---HHHHHHHh-hhhhhhheEEeehhccc
Confidence 5779999999987421 1 1111 28999999863322 22222111 01123348999999998
Q ss_pred ChHHHHHHHHHHHHHHH
Q 026538 217 FPIDVARRAMQIEEVIF 233 (237)
Q Consensus 217 ~~~~~~~~~~~l~~~l~ 233 (237)
+..........+++.+.
T Consensus 208 ~~~~a~~~~~el~~~L~ 224 (332)
T PRK09435 208 NKTAARRAAAEYRSALR 224 (332)
T ss_pred chhHHHHHHHHHHHHHh
Confidence 76666666666666554
No 328
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=7.3e-09 Score=84.30 Aligned_cols=141 Identities=20% Similarity=0.257 Sum_probs=88.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccC--CCC-----ceEEEEEEEcCCeEEEEeCCCCCCcccchHH----HHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--KPG-----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEV----KDA 160 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~--~~g-----~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~----~~~ 160 (237)
.++|+.+|.+|.|||||++.|++...-...++ .|+ .|.++.......+++++||.||++....+.. -+.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 47999999999999999999998731111111 122 2222223333567899999999986433321 111
Q ss_pred HHHHHHHHHh------------ccccccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHH
Q 026538 161 WEELVKEYVS------------TRVSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 227 (237)
Q Consensus 161 ~~~~~~~~~~------------~~~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~ 227 (237)
...-...|+. .....++++|++.. .+++...+.-.++.+.. .+.+|-|+-|+|-....++.+....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAKaDtisK~eL~~FK~k 200 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAKADTISKEELKRFKIK 200 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHHhhhhhHHHHHHHHHH
Confidence 1111112221 11225677777754 46777777666666654 5788999999999999998887777
Q ss_pred HHHHHH
Q 026538 228 IEEVIF 233 (237)
Q Consensus 228 l~~~l~ 233 (237)
+...+.
T Consensus 201 imsEL~ 206 (406)
T KOG3859|consen 201 IMSELV 206 (406)
T ss_pred HHHHHH
Confidence 766543
No 329
>PRK00098 GTPase RsgA; Reviewed
Probab=98.88 E-value=5.4e-09 Score=88.33 Aligned_cols=57 Identities=32% Similarity=0.506 Sum_probs=42.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCC-------CceEEEEEEEcCCeEEEEeCCCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~-------g~t~~~~~~~~~~~~~liDTpG~~~ 150 (237)
..++++|++|+|||||+|+|++... ..++..+ .||+....+.......++||||+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~-~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE-LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC-CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence 4789999999999999999998742 2222222 3777777766655679999999874
No 330
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.88 E-value=4.4e-09 Score=87.34 Aligned_cols=71 Identities=27% Similarity=0.392 Sum_probs=49.4
Q ss_pred EEEEecCCCCchhhHHHHHhcccce--eecc----CCCCceEEEEEEEcCCeEEEEeCCCCCCc----ccchHHHHHHHH
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTS----DKPGLTQTINFFKLGTKLCLVDLPGYGFA----YAKEEVKDAWEE 163 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~--~~~~----~~~g~t~~~~~~~~~~~~~liDTpG~~~~----~~~~~~~~~~~~ 163 (237)
..+++|.+|||||||+|+|.+.... ..++ ....||+....+.....-.|+||||+.+- ...+.+...|.+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~e 245 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFPE 245 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhHH
Confidence 7789999999999999999985311 1112 23448888888887666789999998653 233444455554
Q ss_pred H
Q 026538 164 L 164 (237)
Q Consensus 164 ~ 164 (237)
+
T Consensus 246 f 246 (301)
T COG1162 246 F 246 (301)
T ss_pred H
Confidence 4
No 331
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.88 E-value=1e-09 Score=79.62 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=69.3
Q ss_pred EEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE-------EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 96 ~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~-------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+++|.+++|||.|+-++-... .....--.|..+.+. ....++.+|||+|. +.+.+....|
T Consensus 1 mllgds~~gktcllir~kdga---fl~~~fistvgid~rnkli~~~~~kvklqiwdtagq----------erfrsvt~ay 67 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGA---FLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ----------ERFRSVTHAY 67 (192)
T ss_pred CccccCccCceEEEEEeccCc---eecCceeeeeeeccccceeccCCcEEEEEEeeccch----------HHHhhhhHhh
Confidence 368999999999986654431 111111122222221 12456899999994 2356667777
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCCh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~~ 218 (237)
++. +|.++++.|.....+... ..|+.++.+. .+.+.+++||||+.++
T Consensus 68 yrd---a~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e 118 (192)
T KOG0083|consen 68 YRD---ADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE 118 (192)
T ss_pred hcc---cceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh
Confidence 776 999999999765444333 4566666543 5678899999999653
No 332
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.85 E-value=1.6e-08 Score=80.28 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=80.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.+|+++|.+|+||||+-..++.. ..+.-...+|.|.|+...+. +.-+.+||..|.. .+++.|
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-------------~fmen~ 70 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-------------EFMENY 70 (295)
T ss_pred ceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH-------------HHHHHH
Confidence 58999999999999998887765 33555667788888765443 4668899999842 233333
Q ss_pred Hhcc-----ccccEEEEEEeCCCCCChhHHH----HHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 169 VSTR-----VSLKRVCLLIDTKWGVKPRDHE----LISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 169 ~~~~-----~~~d~v~~vvd~~~~~~~~~~~----~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
+... ...+++++|+|++..--+.|.. .++.+.+. ...+.+.+.|+|++.....+...+.-.
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~ 142 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRK 142 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHH
Confidence 3311 2278899999987543344433 23333332 345888999999987665544444333
No 333
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.84 E-value=4e-09 Score=82.60 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=69.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCC----ceEEEEEE-EcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG----LTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g----~t~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
..++++||..++|||+|+..+.... ......|. ...++... .....+.+|||+|..+- .. ++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~--fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY----------Dr-lR 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNA--FPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY----------DR-LR 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCc--CcccccCeEEccceEEEEecCCCEEEEeeeecCCCccc----------cc-cc
Confidence 3689999999999999998877652 11122221 11222332 22355889999997542 11 11
Q ss_pred HHHhccccccEEEEEEeCCCCC--ChhHHHHHHHHHhc--CCcEEEEEecCCCCCh
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMERS--QTKYQVVLTKTDTVFP 218 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~ 218 (237)
. + .-..+|+++++++...+. ......|+..+..+ +.|+++|++|.||.+.
T Consensus 71 p-l-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 71 P-L-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDD 124 (198)
T ss_pred c-c-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhC
Confidence 0 0 112278888777755433 33335666666665 6999999999999843
No 334
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=3.1e-08 Score=82.22 Aligned_cols=129 Identities=24% Similarity=0.329 Sum_probs=86.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeecc--CCCCceEEE-----EEE------------------------EcCCe
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS--DKPGLTQTI-----NFF------------------------KLGTK 139 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~--~~~g~t~~~-----~~~------------------------~~~~~ 139 (237)
...+|.++|+-..|||||..+|.|-.. ..-+ -..|.|... .++ ..-..
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT-~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWT-DRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred cceEeeeeeecccchhhheehhhceee-echhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 346999999999999999999998530 0000 001111110 000 00134
Q ss_pred EEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-CChhHHHHHHHHHhcC-CcEEEEEecCCCCC
Q 026538 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKYQVVLTKTDTVF 217 (237)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~-~piilv~NK~Dl~~ 217 (237)
+.++|.||+. -++...+....--|+.++|+.++.+ .+++..+.+-.+.-.+ ..+++|-||+|+++
T Consensus 88 VSfVDaPGHe-------------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 88 VSFVDAPGHE-------------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred EEEeeCCchH-------------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence 8899999963 2344444444446999999998763 4666777666666554 46899999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 026538 218 PIDVARRAMQIEEVIF 233 (237)
Q Consensus 218 ~~~~~~~~~~l~~~l~ 233 (237)
.++..+..+++++.++
T Consensus 155 ~E~AlE~y~qIk~Fvk 170 (415)
T COG5257 155 RERALENYEQIKEFVK 170 (415)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9988888888887665
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.82 E-value=5.5e-08 Score=82.57 Aligned_cols=133 Identities=18% Similarity=0.185 Sum_probs=92.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeec-------------cCCCCceEEEEEEEc--------------------
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------------SDKPGLTQTINFFKL-------------------- 136 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~-------------~~~~g~t~~~~~~~~-------------------- 136 (237)
+....|+.+|.-+.|||||+-+|.... .... .-..|.+.++.+.-.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~-~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGR-LDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecC-CCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 455688899999999999999887542 0000 001223333322111
Q ss_pred ------CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEE
Q 026538 137 ------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVL 210 (237)
Q Consensus 137 ------~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~ 210 (237)
+.-+.++||-|+.- .....++..+. ...|..++++-+.++++....+.+-.+.....|+++|+
T Consensus 194 ~vv~~aDklVsfVDtvGHEp---------wLrTtirGL~g--qk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvv 262 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEP---------WLRTTIRGLLG--QKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVV 262 (527)
T ss_pred HhhhhcccEEEEEecCCccH---------HHHHHHHHHhc--cccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEE
Confidence 12378999999742 11112222221 23899999999999999999999988888899999999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHh
Q 026538 211 TKTDTVFPIDVARRAMQIEEVIFY 234 (237)
Q Consensus 211 NK~Dl~~~~~~~~~~~~l~~~l~~ 234 (237)
||+|+.+.+..+...+++.+.++.
T Consensus 263 TK~D~~~ddr~~~v~~ei~~~Lk~ 286 (527)
T COG5258 263 TKIDMVPDDRFQGVVEEISALLKR 286 (527)
T ss_pred EecccCcHHHHHHHHHHHHHHHHH
Confidence 999999999888888888887764
No 336
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.81 E-value=1.9e-07 Score=81.98 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=64.9
Q ss_pred CEEEEecCCCCchhhHHHHHh------cccceeeccCCC---C---------ceEEEEEEE-------------------
Q 026538 93 PEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKP---G---------LTQTINFFK------------------- 135 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~------~~~~~~~~~~~~---g---------~t~~~~~~~------------------- 135 (237)
..|+++|.+||||||++..|. |. .+..++.-+ + .-..+.++.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 467899999999999998886 22 222222111 0 001111111
Q ss_pred -cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCC
Q 026538 136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (237)
Q Consensus 136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D 214 (237)
.+..+.|+||||.... .... ..+ +..+... ..++.+++|+|+..+ .......+.+...-.+.-+|+||.|
T Consensus 180 ~~~~DvViIDTaGr~~~--d~~l---m~E-l~~i~~~-~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQ--EDSL---FEE-MLQVAEA-IQPDNIIFVMDGSIG--QAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred hCCCCEEEEECCCCCcc--hHHH---HHH-HHHHhhh-cCCcEEEEEeccccC--hhHHHHHHHHHhccCCcEEEEECcc
Confidence 1467999999996431 1111 112 2222222 236889999998755 2334444555444356788999999
Q ss_pred CC
Q 026538 215 TV 216 (237)
Q Consensus 215 l~ 216 (237)
..
T Consensus 251 ~~ 252 (429)
T TIGR01425 251 GH 252 (429)
T ss_pred CC
Confidence 75
No 337
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.81 E-value=8.8e-09 Score=82.78 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=63.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.+..+|+++|.|++|||||+..+++.. +.......||..+ .+...+..+.++|.||+.+..++.. .--+
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgk------GRGR 131 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGK------GRGR 131 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCC------CCCc
Confidence 456799999999999999999999874 4445555666554 2444588899999999876433221 1122
Q ss_pred HHHhccccccEEEEEEeCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWG 187 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~ 187 (237)
+.+.....+|+|++|+|+...
T Consensus 132 QviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 132 QVIAVARTADLILMVLDATKS 152 (364)
T ss_pred eEEEEeecccEEEEEecCCcc
Confidence 334444559999999998754
No 338
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.77 E-value=2.3e-08 Score=84.10 Aligned_cols=58 Identities=29% Similarity=0.394 Sum_probs=42.5
Q ss_pred CEEEEecCCCCchhhHHHHHhccccee--ecc----CCCCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVV--RTS----DKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~--~~~----~~~g~t~~~~~~~~~~~~~liDTpG~~~ 150 (237)
..++++|++|+|||||+|+|++..... .++ ...++|+....+.......++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 578999999999999999999874211 111 2334777777776654568999999954
No 339
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.76 E-value=1.4e-08 Score=87.32 Aligned_cols=86 Identities=21% Similarity=0.134 Sum_probs=59.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----c----------------CCeEEEEeCCCCCCcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----L----------------GTKLCLVDLPGYGFAY 152 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~----------------~~~~~liDTpG~~~~~ 152 (237)
.++.++|.||+|||||+|+|++.. .....+.|.+|.+..... . ...+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~-~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLL-GNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCC-ccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 588999999999999999999984 326677788776543211 1 2358999999986532
Q ss_pred cchHHHHHHHHHHHHHHhccccccEEEEEEeCC
Q 026538 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (237)
+... .+-..++.....+|++++|+|+.
T Consensus 82 s~g~------Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGE------GLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hccc------CcchHHHHHHHhCCEEEEEEeCC
Confidence 2211 12233444444599999999975
No 340
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.7e-07 Score=78.45 Aligned_cols=131 Identities=18% Similarity=0.276 Sum_probs=92.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc--------------ceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~--------------~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~ 153 (237)
...+|.-+|....|||||--+++.-. +-++....+|.|... .+......+--+|+||+.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA---- 128 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA---- 128 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH----
Confidence 34588999999999999998887421 011222234555543 333335667889999974
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHHHHHH-HHHHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARR-AMQIEEV 231 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~~~~~-~~~l~~~ 231 (237)
++++..+.....-|+.++|+.+.++..++..+.+-..++.+++ +++.+||.|+++..+..++ .-++++.
T Consensus 129 ---------DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~REl 199 (449)
T KOG0460|consen 129 ---------DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIREL 199 (449)
T ss_pred ---------HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHH
Confidence 3455556555568999999999999999998888777777776 7778999999965555444 4466666
Q ss_pred HHh
Q 026538 232 IFY 234 (237)
Q Consensus 232 l~~ 234 (237)
+..
T Consensus 200 Lse 202 (449)
T KOG0460|consen 200 LSE 202 (449)
T ss_pred HHH
Confidence 653
No 341
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.73 E-value=4.6e-07 Score=76.71 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
....|+|+|++|+|||||++.|..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999775
No 342
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.73 E-value=6.1e-08 Score=77.62 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=24.8
Q ss_pred CCCCCCCEEEEecCCCCchhhHHHHHhcc
Q 026538 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 87 ~~~~~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+...+.+.|+++|++|+|||||++.++..
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34457889999999999999999999864
No 343
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.70 E-value=7.8e-08 Score=73.75 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=62.9
Q ss_pred CEEEEecCCCCchhhHHHHHhccc---ceeeccCCCC--------------ceEEEE---------------E-------
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG--------------LTQTIN---------------F------- 133 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~---~~~~~~~~~g--------------~t~~~~---------------~------- 133 (237)
|.++++|..|+|||||++.++... ......+..| ....+. .
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 468899999999999999988652 1111111111 000000 0
Q ss_pred --EEcCCeEEEEeCCCCCCcccchHHHHHHHHH-HHHHHhccccccEEEEEEeCCCCCChh--HHHHHHHHHhcCCcEEE
Q 026538 134 --FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERSQTKYQV 208 (237)
Q Consensus 134 --~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~~~~piil 208 (237)
........++||||+.++. .+ ...+ ....+.....++.+++++|+....... ...+..++... -++
T Consensus 81 ~~~~~~~d~I~IEt~G~~~p~---~~---~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~i 151 (158)
T cd03112 81 DAGKIAFDRIVIETTGLADPG---PV---AQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRI 151 (158)
T ss_pred HhccCCCCEEEEECCCcCCHH---HH---HHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEE
Confidence 0124568999999987632 11 1111 112233344589999999986422111 12233444433 377
Q ss_pred EEecCCC
Q 026538 209 VLTKTDT 215 (237)
Q Consensus 209 v~NK~Dl 215 (237)
|+||+|+
T Consensus 152 vlnk~dl 158 (158)
T cd03112 152 LLNKTDL 158 (158)
T ss_pred EEecccC
Confidence 9999996
No 344
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.70 E-value=9.5e-09 Score=87.40 Aligned_cols=59 Identities=34% Similarity=0.525 Sum_probs=54.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~ 150 (237)
..+++.|+|.||+||||+||+|... ....+++.||.|+.+....++..+.|+|.||+.-
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVP 309 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceee
Confidence 4579999999999999999999998 6688999999999999999999999999999743
No 345
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.1e-07 Score=89.98 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCCCCEEEEecCCCCchhhHHHHHhcccce-----eeccCCCCceEEEEEEEcCCeEEEEeCCCCC-Ccc-cchHHHHHH
Q 026538 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKPGLTQTINFFKLGTKLCLVDLPGYG-FAY-AKEEVKDAW 161 (237)
Q Consensus 89 ~~~~~~i~lvG~~~~GKSTLin~L~~~~~~-----~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~-~~~-~~~~~~~~~ 161 (237)
..+.|..+|+|++|+||||++..---.-.+ ......+| |+++.+. .+..-.+|||+|-. ... ..+.-...|
T Consensus 122 lyeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdww-f~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 122 LYELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDWW-FTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred hhcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCcc-cccceEEEcCCcceecccCcchhhHHHH
Confidence 367899999999999999998543221000 11122333 6666633 36668999999932 221 223345566
Q ss_pred HHHHHHH--HhccccccEEEEEEeCCCCCChhHH---HHH-------HHHH---hcCCcEEEEEecCCCCC
Q 026538 162 EELVKEY--VSTRVSLKRVCLLIDTKWGVKPRDH---ELI-------SLME---RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 162 ~~~~~~~--~~~~~~~d~v~~vvd~~~~~~~~~~---~~~-------~~l~---~~~~piilv~NK~Dl~~ 217 (237)
..++... ++.....|+|++.+|.++-.+.... ... +.+. ....||++++||.|+++
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 6654322 2333448999999997653332221 122 2222 23689999999999985
No 346
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=3.8e-08 Score=84.25 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=89.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceee----------c------cCCCCceEE---EEEEEcCCeEEEEeCCCCCCcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----------T------SDKPGLTQT---INFFKLGTKLCLVDLPGYGFAY 152 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~----------~------~~~~g~t~~---~~~~~~~~~~~liDTpG~~~~~ 152 (237)
..+|.++....+||||...+++--.+... + ....|.|.. +.+.+.|.++++|||||+.+-
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf- 115 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF- 115 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE-
Confidence 45899999999999999888763211000 1 112344433 355667999999999998652
Q ss_pred cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
.-+++ ..++- .|+++.|+|++.++..+...+.++....++|-+..+||+|.... ..+..++.+++.+
T Consensus 116 -~leve----rclrv-------ldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a-nfe~avdsi~ekl 182 (753)
T KOG0464|consen 116 -RLEVE----RCLRV-------LDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA-NFENAVDSIEEKL 182 (753)
T ss_pred -EEEHH----HHHHH-------hcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh-hhhhHHHHHHHHh
Confidence 22222 22222 79999999999999999888888888899999999999998643 3444555666555
Q ss_pred H
Q 026538 233 F 233 (237)
Q Consensus 233 ~ 233 (237)
+
T Consensus 183 ~ 183 (753)
T KOG0464|consen 183 G 183 (753)
T ss_pred C
Confidence 4
No 347
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.4e-07 Score=79.90 Aligned_cols=128 Identities=23% Similarity=0.325 Sum_probs=87.6
Q ss_pred CEEEEecCCCCchhhHHHHHhccc-----ceeeccC-------CCCceEEEEEEEc------------------------
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD-------KPGLTQTINFFKL------------------------ 136 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~-------~~g~t~~~~~~~~------------------------ 136 (237)
.+++++|.-.+|||||+..|+..+ +-+...- ..|.|..+.....
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 589999999999999999988642 0011000 1122222211110
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh--ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D 214 (237)
..-++++|.+|+... .+..+. +.-..+..++|+.+..++.....+.+..+...++|+.++++|+|
T Consensus 248 SKlvTfiDLAGh~kY-------------~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~D 314 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKY-------------QKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMD 314 (591)
T ss_pred cceEEEeecccchhh-------------heeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeec
Confidence 234899999997431 110000 01126889999999989888888999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 026538 215 TVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 215 l~~~~~~~~~~~~l~~~l~ 233 (237)
+.++..+.+..+++...+.
T Consensus 315 l~~~~~~~~tv~~l~nll~ 333 (591)
T KOG1143|consen 315 LVDRQGLKKTVKDLSNLLA 333 (591)
T ss_pred cccchhHHHHHHHHHHHHh
Confidence 9999888888887777654
No 348
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.6e-07 Score=69.18 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=71.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
..+++++|-.|+||||++-.+--.+ ....-+.+|.... +..+.+.++.+||.-|... ++. +.+.|+..
T Consensus 18 e~rililgldGaGkttIlyrlqvge-vvttkPtigfnve-~v~yKNLk~~vwdLggqtS------irP----yWRcYy~d 85 (182)
T KOG0072|consen 18 EMRILILGLDGAGKTTILYRLQVGE-VVTTKPTIGFNVE-TVPYKNLKFQVWDLGGQTS------IRP----YWRCYYAD 85 (182)
T ss_pred ceEEEEeeccCCCeeEEEEEcccCc-ccccCCCCCcCcc-ccccccccceeeEccCccc------ccH----HHHHHhcc
Confidence 3589999999999999886665442 2222233332222 1222577899999998543 333 44556655
Q ss_pred cccccEEEEEEeCCCC--CChhHHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
.|.++||+|+++. +.....++...+.+ .+..+++++||.|....
T Consensus 86 ---t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 86 ---TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred ---cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 8999999998753 33333444444432 35678899999998643
No 349
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.60 E-value=3.1e-07 Score=71.81 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=62.3
Q ss_pred CEEEEecCCCCchhhHHHHHhc----ccceeeccCCCC-------------c-eEEEE-------------------EEE
Q 026538 93 PEIAFAGRSNVGKSSMLNALTR----QWGVVRTSDKPG-------------L-TQTIN-------------------FFK 135 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~----~~~~~~~~~~~g-------------~-t~~~~-------------------~~~ 135 (237)
|.+++.|..|||||||++.++. ..+.....+..| . ...+. ...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 5789999999999999999993 112222222112 0 01110 000
Q ss_pred c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC--ChhHHHHHHHHHhcCCcEEEEEe
Q 026538 136 L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMERSQTKYQVVLT 211 (237)
Q Consensus 136 ~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~~~~piilv~N 211 (237)
. +....++.+.|..++..- + +. ...+...-..+.++.|+|+..-. ......+..++.. --++|+|
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l--~---~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---ADvIvln 149 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPL--I---LQ---DPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---ADVIVLN 149 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGH--H---HH---SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----SEEEEE
T ss_pred cCCCcCEEEECCccccccchh--h---hc---cccccccccccceeEEeccccccccccchhhhhhcchh---cCEEEEe
Confidence 1 357899999998764322 0 01 11111122278899999985421 1111233333433 3488999
Q ss_pred cCCCCChH
Q 026538 212 KTDTVFPI 219 (237)
Q Consensus 212 K~Dl~~~~ 219 (237)
|+|+.+.+
T Consensus 150 K~D~~~~~ 157 (178)
T PF02492_consen 150 KIDLVSDE 157 (178)
T ss_dssp -GGGHHHH
T ss_pred ccccCChh
Confidence 99998766
No 350
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.59 E-value=1.6e-08 Score=85.99 Aligned_cols=61 Identities=31% Similarity=0.572 Sum_probs=53.5
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCc
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~ 151 (237)
...+.|.|+|+||+||||+||+|... .+..+.++||-|+-.++..+-..+.|||+||+..+
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYP 365 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCccCC
Confidence 35578999999999999999999999 78899999999987777667778999999997654
No 351
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.57 E-value=8.4e-07 Score=75.42 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=73.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcccc---ee-eccCC-----C--C----ceEEEE-------E----------------E
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWG---VV-RTSDK-----P--G----LTQTIN-------F----------------F 134 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~---~~-~~~~~-----~--g----~t~~~~-------~----------------~ 134 (237)
|..++.|.-|||||||+|.|+.... ++ ++... - . +..++. . .
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 6788999999999999999986531 11 11110 0 0 000000 0 0
Q ss_pred EcCCeEEEEeCCCCCCcccchHHHHHHHHHHH-HHHhccccccEEEEEEeCCCCCChhH---HHHHHHHHhcCCcEEEEE
Q 026538 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK-EYVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMERSQTKYQVVL 210 (237)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~v~~vvd~~~~~~~~~---~~~~~~l~~~~~piilv~ 210 (237)
..+....+|.|.|+.++... + ..+.. ..+...-..|.++-|+|+.+...... ..+..++.. -=++|+
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv--~----~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivl 152 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPV--I----QTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVL 152 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHH--H----HHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEEE
Confidence 12456899999999875211 1 11111 22223334789999999986433332 233344443 348999
Q ss_pred ecCCCCChHHHHHHHHHH
Q 026538 211 TKTDTVFPIDVARRAMQI 228 (237)
Q Consensus 211 NK~Dl~~~~~~~~~~~~l 228 (237)
||.|+++++++....+.+
T Consensus 153 NK~Dlv~~~~l~~l~~~l 170 (323)
T COG0523 153 NKTDLVDAEELEALEARL 170 (323)
T ss_pred ecccCCCHHHHHHHHHHH
Confidence 999999988644444333
No 352
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.53 E-value=9.9e-07 Score=75.86 Aligned_cols=132 Identities=17% Similarity=0.225 Sum_probs=74.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc---ceeeccCCCC-----------c------eEEEEEE----------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-----------L------TQTINFF---------------- 134 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~---~~~~~~~~~g-----------~------t~~~~~~---------------- 134 (237)
..|..++.|.-|+|||||+|.++... +++...+..| . ...+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 45788999999999999999998541 1111111111 0 0011000
Q ss_pred -------EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChh----------------
Q 026538 135 -------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR---------------- 191 (237)
Q Consensus 135 -------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~---------------- 191 (237)
.......++.|.|+.++. .+...+ ....+...-..+.|+.|+|+.......
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P~---~i~~~~---~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~ 156 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALPK---PLVQAF---QWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADD 156 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCHH---HHHHHh---cCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccc
Confidence 113568899999987631 121111 111122222378899999987432100
Q ss_pred --------HHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538 192 --------DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV 231 (237)
Q Consensus 192 --------~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~ 231 (237)
...+..++. .--++|+||+|+++++++....+.+++.
T Consensus 157 ~~~~~~~~~~~~~~Qi~---~AD~IvlnK~Dl~~~~~l~~~~~~l~~~ 201 (341)
T TIGR02475 157 NLDHETPLEELFEDQLA---CADLVILNKADLLDAAGLARVRAEIAAE 201 (341)
T ss_pred cccccchHHHHHHHHHH---hCCEEEEeccccCCHHHHHHHHHHHHHh
Confidence 011223333 3358899999999988877776666553
No 353
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.7e-07 Score=83.57 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=88.0
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccce-eeccC---------------CCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSD---------------KPGLTQTI---NFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~-~~~~~---------------~~g~t~~~---~~~~~~~~~~liDTpG~~~ 150 (237)
....+|.+.-+..+||||+-++++-..+. ..... ..|+|-.. .+.+...++++|||||+.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 35568999999999999999887743210 11111 11222211 2233478899999999865
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
- .-+++++ +...|+.++|+|+..+++.+...+.+++++.++|.+..+||+|.+...- .+.++.+..
T Consensus 117 F--T~EVeRA-----------LrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~-~~~l~~i~~ 182 (721)
T KOG0465|consen 117 F--TFEVERA-----------LRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASP-FRTLNQIRT 182 (721)
T ss_pred E--EEEehhh-----------hhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCCh-HHHHHHHHh
Confidence 1 1122221 1228999999999999999999999999999999999999999985543 344455554
Q ss_pred HHH
Q 026538 231 VIF 233 (237)
Q Consensus 231 ~l~ 233 (237)
.++
T Consensus 183 kl~ 185 (721)
T KOG0465|consen 183 KLN 185 (721)
T ss_pred hcC
Confidence 443
No 354
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.51 E-value=7.3e-07 Score=72.62 Aligned_cols=104 Identities=22% Similarity=0.363 Sum_probs=56.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc-----cee-----eccCCCC------------ceEE--EEEEE-----------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV-----RTSDKPG------------LTQT--INFFK----------- 135 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~-----~~~~~~g------------~t~~--~~~~~----------- 135 (237)
+.++|.|.|+||+|||||+++|.... .++ +.++..| ...+ +-+..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 34699999999999999999987431 111 1222222 0000 11111
Q ss_pred ------------cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC--CChhHHHHHHHHHh
Q 026538 136 ------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER 201 (237)
Q Consensus 136 ------------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~ 201 (237)
.|+.+.|+.|.|.+.. ++ ++.. .+|.+++|+-+..+ ++-...-+++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs----E~-----~I~~-------~aD~~v~v~~Pg~GD~iQ~~KaGimE---- 167 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQS----EV-----DIAD-------MADTVVLVLVPGLGDEIQAIKAGIME---- 167 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTH----HH-----HHHT-------TSSEEEEEEESSTCCCCCTB-TTHHH----
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCcc----HH-----HHHH-------hcCeEEEEecCCCccHHHHHhhhhhh----
Confidence 2678999999998741 11 1111 28999999865433 3333333333
Q ss_pred cCCcEEEEEecCCCC
Q 026538 202 SQTKYQVVLTKTDTV 216 (237)
Q Consensus 202 ~~~piilv~NK~Dl~ 216 (237)
+.-++|+||+|+.
T Consensus 168 --iaDi~vVNKaD~~ 180 (266)
T PF03308_consen 168 --IADIFVVNKADRP 180 (266)
T ss_dssp --H-SEEEEE--SHH
T ss_pred --hccEEEEeCCChH
Confidence 3458999999953
No 355
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.50 E-value=1e-06 Score=78.08 Aligned_cols=76 Identities=26% Similarity=0.333 Sum_probs=50.1
Q ss_pred eEEEEeCCCCCCcccc---hHHHHHHHHHHHHHHhccccccEEEEEE-eCCCC-CChhHHHHHHHHHhcCCcEEEEEecC
Q 026538 139 KLCLVDLPGYGFAYAK---EEVKDAWEELVKEYVSTRVSLKRVCLLI-DTKWG-VKPRDHELISLMERSQTKYQVVLTKT 213 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~v~~vv-d~~~~-~~~~~~~~~~~l~~~~~piilv~NK~ 213 (237)
...++|.||+..+... .+..+....+...|..+ .++|++++ |.+-. -......+...+...+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~N---PNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQN---PNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcC---CCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 4789999998654222 22234455666676666 88888887 34321 12233456666777889999999999
Q ss_pred CCCC
Q 026538 214 DTVF 217 (237)
Q Consensus 214 Dl~~ 217 (237)
|+..
T Consensus 490 DlAE 493 (980)
T KOG0447|consen 490 DLAE 493 (980)
T ss_pred chhh
Confidence 9863
No 356
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=3.2e-07 Score=70.68 Aligned_cols=115 Identities=12% Similarity=0.065 Sum_probs=69.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--cC-CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LG-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++++++|..|.||||+.++.+..+..-.+....|......... .| .++..|||+|... +..+...|
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk----------~gglrdgy 79 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEK----------KGGLRDGY 79 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccccee----------eccccccc
Confidence 57899999999999999999876632222333333333322222 23 7899999999543 11222233
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh--cCCcEEEEEecCCCCChH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~piilv~NK~Dl~~~~ 219 (237)
+-. ..+.++++|....++... ..+.+.+.+ .++|+++.+||.|...+.
T Consensus 80 yI~---~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 80 YIQ---GQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK 130 (216)
T ss_pred EEe---cceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc
Confidence 322 566777788665444333 122222222 258999999999976543
No 357
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=98.47 E-value=1.8e-06 Score=71.23 Aligned_cols=136 Identities=18% Similarity=0.169 Sum_probs=79.4
Q ss_pred CCCCCCCEEEEecCCCCchhhHHHHHhccc---ceeeccCCCC-------------------------------ceE-EE
Q 026538 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-------------------------------LTQ-TI 131 (237)
Q Consensus 87 ~~~~~~~~i~lvG~~~~GKSTLin~L~~~~---~~~~~~~~~g-------------------------------~t~-~~ 131 (237)
.+..+.|.-.+.|+-|+|||||+|.++... +++..-+.-| +|. +.
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~ 131 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDN 131 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecch
Confidence 344567888999999999999999988542 2221111111 010 00
Q ss_pred --------EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH--------HHH
Q 026538 132 --------NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--------HEL 195 (237)
Q Consensus 132 --------~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~--------~~~ 195 (237)
..........++.|.|+..+..-.. - -+....+.+.-..|+|+-|+|+.+.....+ .+.
T Consensus 132 gvraie~lvqkkGkfD~IllETTGlAnPaPia~--~---Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA 206 (391)
T KOG2743|consen 132 GVRAIENLVQKKGKFDHILLETTGLANPAPIAS--M---FWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEA 206 (391)
T ss_pred HHHHHHHHHhcCCCcceEEEeccCCCCcHHHHH--H---HhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHH
Confidence 0001134578999999987532221 1 122333444445899999999876321111 122
Q ss_pred HHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 196 ~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
.+++. ..--+++||.|++..+++....+.++.
T Consensus 207 ~~QiA---~AD~II~NKtDli~~e~~~~l~q~I~~ 238 (391)
T KOG2743|consen 207 TRQIA---LADRIIMNKTDLVSEEEVKKLRQRIRS 238 (391)
T ss_pred HHHHh---hhheeeeccccccCHHHHHHHHHHHHH
Confidence 22222 233577899999999888777776654
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.44 E-value=8.3e-06 Score=69.47 Aligned_cols=123 Identities=16% Similarity=0.207 Sum_probs=63.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc-----ceeecc-CCC--C---------ceEEEEEE-------------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-DKP--G---------LTQTINFF------------------- 134 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~-~~~--g---------~t~~~~~~------------------- 134 (237)
....++++|++|+||||++..|.+.. .+.... +.. + ....+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34578999999999999998887531 111111 110 0 00011111
Q ss_pred -EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh-ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEec
Q 026538 135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (237)
Q Consensus 135 -~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK 212 (237)
..+..+.|+||||.... .....+....+.+..-. .....+.+++|+|+..+. ............-.+.-+|+||
T Consensus 193 ~~~~~D~ViIDTaGr~~~--~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~~~giIlTK 268 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHN--KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVGLTGIILTK 268 (318)
T ss_pred HhCCCCEEEEeCCCCCcC--CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCCCCEEEEEC
Confidence 12467999999996542 11111222222221100 012267889999988542 2222222222222356789999
Q ss_pred CCCCC
Q 026538 213 TDTVF 217 (237)
Q Consensus 213 ~Dl~~ 217 (237)
.|...
T Consensus 269 lD~t~ 273 (318)
T PRK10416 269 LDGTA 273 (318)
T ss_pred CCCCC
Confidence 99653
No 359
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.44 E-value=6.2e-06 Score=70.28 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc---ceeeccCCCC-----------ceEEEEEE-------E--------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-----------LTQTINFF-------K-------------- 135 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~---~~~~~~~~~g-----------~t~~~~~~-------~-------------- 135 (237)
..|..++.|.-|||||||+|.++... +++...+..| ....+... .
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 46889999999999999999998542 1111111111 00011000 0
Q ss_pred ------cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhcCCcEE
Q 026538 136 ------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQ 207 (237)
Q Consensus 136 ------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~~~pii 207 (237)
......+|.|.|..++. .+-+.+. ....+...-..+.++.|+|+.......+ ..+..++.. --+
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~---~i~~~~~--~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~ 154 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPG---PIIQTFF--SHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADR 154 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHH---HHHHHHh--cChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCE
Confidence 02567899999987631 1111110 0111222223688999999875322211 122233333 348
Q ss_pred EEEecCCCCCh
Q 026538 208 VVLTKTDTVFP 218 (237)
Q Consensus 208 lv~NK~Dl~~~ 218 (237)
+|+||+|+.++
T Consensus 155 IvlnK~Dl~~~ 165 (318)
T PRK11537 155 ILLTKTDVAGE 165 (318)
T ss_pred EEEeccccCCH
Confidence 89999999875
No 360
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.42 E-value=2.4e-06 Score=67.83 Aligned_cols=114 Identities=25% Similarity=0.378 Sum_probs=60.3
Q ss_pred EEEEecCCCCchhhHHHHHhccc-----ceeecc-C--CCCc---------eEEEEEEE--------------------c
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-D--KPGL---------TQTINFFK--------------------L 136 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~-~--~~g~---------t~~~~~~~--------------------~ 136 (237)
.|+++|++||||||.+-.|.... .+..++ + ..|. ...+.++. .
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 57899999999999998776431 111111 1 1110 00111111 1
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH-HHHHHHHhcCCcEEEEEecCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTKTDT 215 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~~~~piilv~NK~Dl 215 (237)
+..+.+|||||.... .....+.+..+.. .. ..+-+++|++++.+ ..+. .+.......+ +--+++||.|.
T Consensus 83 ~~D~vlIDT~Gr~~~--d~~~~~el~~~~~----~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-~~~lIlTKlDe 152 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPR--DEELLEELKKLLE----AL-NPDEVHLVLSATMG--QEDLEQALAFYEAFG-IDGLILTKLDE 152 (196)
T ss_dssp TSSEEEEEE-SSSST--HHHHHHHHHHHHH----HH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-TCEEEEESTTS
T ss_pred CCCEEEEecCCcchh--hHHHHHHHHHHhh----hc-CCccceEEEecccC--hHHHHHHHHHhhccc-CceEEEEeecC
Confidence 356999999997542 1111122222222 22 26889999998754 2232 3333333333 34667999998
Q ss_pred CC
Q 026538 216 VF 217 (237)
Q Consensus 216 ~~ 217 (237)
..
T Consensus 153 t~ 154 (196)
T PF00448_consen 153 TA 154 (196)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 361
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.41 E-value=1.5e-05 Score=66.44 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=41.3
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH-hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV-STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl 215 (237)
+..+.|+||||.... .....+....+.+... .....+|.+++|+|+..+ ...........+.-.+.-+|+||+|.
T Consensus 154 ~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~~g~IlTKlDe 229 (272)
T TIGR00064 154 NIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGLTGIILTKLDG 229 (272)
T ss_pred CCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCCCEEEEEccCC
Confidence 467999999997542 1111122222222111 011237889999998743 33333223322222356889999998
Q ss_pred CC
Q 026538 216 VF 217 (237)
Q Consensus 216 ~~ 217 (237)
..
T Consensus 230 ~~ 231 (272)
T TIGR00064 230 TA 231 (272)
T ss_pred CC
Confidence 54
No 362
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=9.6e-07 Score=77.46 Aligned_cols=126 Identities=19% Similarity=0.261 Sum_probs=81.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC---------------ceEEEE---EE-E---------------c
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---------------LTQTIN---FF-K---------------L 136 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g---------------~t~~~~---~~-~---------------~ 136 (237)
+..++.++.....|||||..+|..+.++ +.+...| .|.... .+ . .
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgI-is~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGI-ISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhce-eeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 5568889999999999999999876432 1112222 221111 11 0 1
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+.-+++||.||+.+- ..+....+...|+.++|+|.-.++.-+...++++.-...+.-++|+||+|..
T Consensus 97 ~FLiNLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred ceeEEeccCCCcccc-------------hhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 455899999998651 1122223333799999999988888788888877666667778899999963
Q ss_pred ------ChHHHHHHHHHHHH
Q 026538 217 ------FPIDVARRAMQIEE 230 (237)
Q Consensus 217 ------~~~~~~~~~~~l~~ 230 (237)
+.+++.+..+++-+
T Consensus 164 lLELq~~~EeLyqtf~R~VE 183 (842)
T KOG0469|consen 164 LLELQLSQEELYQTFQRIVE 183 (842)
T ss_pred HHhhcCCHHHHHHHHHHHHh
Confidence 44455444444433
No 363
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.37 E-value=1.7e-06 Score=64.99 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=43.2
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHH
Q 026538 173 VSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQI 228 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l 228 (237)
..+|++++|+|+..+....+..+.+.+... ++|+++|+||+|+.++.+.....+.+
T Consensus 10 ~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~ 67 (141)
T cd01857 10 ERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYF 67 (141)
T ss_pred hhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHH
Confidence 339999999999887777766777777665 79999999999998766554444433
No 364
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.36 E-value=3.8e-06 Score=72.73 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-.++|+|++|+||||++..|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999998754
No 365
>PTZ00099 rab6; Provisional
Probab=98.35 E-value=1.5e-06 Score=67.79 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=44.5
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEec
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTK 212 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK 212 (237)
...+.||||||... +..+...|+.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||
T Consensus 28 ~v~l~iwDt~G~e~----------~~~~~~~~~~~---ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQER----------FRSLIPSYIRD---SAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHH----------hhhccHHHhCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 45689999999532 23344455543 999999999876422222 234443322 35789999999
Q ss_pred CCCCC
Q 026538 213 TDTVF 217 (237)
Q Consensus 213 ~Dl~~ 217 (237)
+|+..
T Consensus 95 ~DL~~ 99 (176)
T PTZ00099 95 TDLGD 99 (176)
T ss_pred ccccc
Confidence 99863
No 366
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.33 E-value=6.8e-06 Score=68.08 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
+..+|.|.|.||+|||||+..|..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 345899999999999999999874
No 367
>PRK14974 cell division protein FtsY; Provisional
Probab=98.28 E-value=8.5e-06 Score=69.77 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=39.7
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+..+.|+||||.... ....-.....+. ... ..|.+++|+|+..+ .......+.+...-..--+|+||.|..
T Consensus 222 ~~DvVLIDTaGr~~~--~~~lm~eL~~i~----~~~-~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 222 GIDVVLIDTAGRMHT--DANLMDELKKIV----RVT-KPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCEEEEECCCccCC--cHHHHHHHHHHH----Hhh-CCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 456999999996531 111111122221 111 26889999998644 222333333332223467889999985
Q ss_pred C
Q 026538 217 F 217 (237)
Q Consensus 217 ~ 217 (237)
.
T Consensus 293 ~ 293 (336)
T PRK14974 293 A 293 (336)
T ss_pred C
Confidence 4
No 368
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.27 E-value=2.7e-06 Score=64.96 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=43.0
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 173 VSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
..+|++++|+|++.++...+..+.+.+... ++|+++|+||+|+.++++.......+.
T Consensus 7 ~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~ 65 (157)
T cd01858 7 DSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILS 65 (157)
T ss_pred hhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHh
Confidence 349999999999887666666677766643 489999999999987766555555444
No 369
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.24 E-value=5.4e-06 Score=70.52 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=58.8
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
-+++||.+|+... ++..+ |--+....|...+++-++.++--...+.+.......+|+++|++|+|..+.
T Consensus 220 viTFIDLAGHEkY---------LKTTv--FGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 220 VITFIDLAGHEKY---------LKTTV--FGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPA 288 (641)
T ss_pred eEEEEeccchhhh---------hheee--eccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcH
Confidence 3889999997421 01000 111222368888888888777666677777777778999999999999988
Q ss_pred HHHHHHHHHHHHHHH
Q 026538 219 IDVARRAMQIEEVIF 233 (237)
Q Consensus 219 ~~~~~~~~~l~~~l~ 233 (237)
.-+++....+.+.++
T Consensus 289 NiLqEtmKll~rllk 303 (641)
T KOG0463|consen 289 NILQETMKLLTRLLK 303 (641)
T ss_pred HHHHHHHHHHHHHhc
Confidence 877777766666554
No 370
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.22 E-value=2.1e-05 Score=69.73 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
...|+++|.+|+||||++-.|..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45788999999999999977753
No 371
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.20 E-value=5.6e-05 Score=63.33 Aligned_cols=27 Identities=22% Similarity=0.371 Sum_probs=24.0
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccc
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+...+|+++|..++||||||..|-|.+
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e 76 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE 76 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc
Confidence 456799999999999999999998874
No 372
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.19 E-value=4.2e-06 Score=71.39 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=42.0
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC--------ChhH---HHHHHHHHh----
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRD---HELISLMER---- 201 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~~~---~~~~~~l~~---- 201 (237)
+..+.+||++|... .+..|..+ +. .+++|+||+|.++.- ...- ...++.+..
T Consensus 160 ~~~~~~~DvgGq~~------~R~kW~~~----f~---~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 160 NLKFRMFDVGGQRS------ERKKWIHC----FE---DVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ceEEEEECCCCCcc------cchhHHHH----hC---CCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 56688999999542 33445443 32 299999999977421 0111 222333322
Q ss_pred cCCcEEEEEecCCCC
Q 026538 202 SQTKYQVVLTKTDTV 216 (237)
Q Consensus 202 ~~~piilv~NK~Dl~ 216 (237)
.+.|+++++||.|+.
T Consensus 227 ~~~pill~~NK~D~f 241 (317)
T cd00066 227 ANTSIILFLNKKDLF 241 (317)
T ss_pred cCCCEEEEccChHHH
Confidence 368999999999975
No 373
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=3.4e-05 Score=66.96 Aligned_cols=117 Identities=24% Similarity=0.324 Sum_probs=62.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc-----ceeeccC--CC-C------c---eEEEEEE--E---------------cC
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--KP-G------L---TQTINFF--K---------------LG 137 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~--~~-g------~---t~~~~~~--~---------------~~ 137 (237)
...|+|+|++||||||++..|...- .+..++. .. + + ...+.+. . .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3588999999999999999987421 1111111 00 0 0 0001111 0 13
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
..+.||||||.... ....+. ++ ..++.. ...+.+++|+|+...- .....+++.+... ..--+|+||.|...
T Consensus 321 ~DvVLIDTaGRs~k-d~~lm~----EL-~~~lk~-~~PdevlLVLsATtk~-~d~~~i~~~F~~~-~idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYR-ASETVE----EM-IETMGQ-VEPDYICLTLSASMKS-KDMIEIITNFKDI-HIDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCc-CHHHHH----HH-HHHHhh-cCCCeEEEEECCccCh-HHHHHHHHHhcCC-CCCEEEEEcccCCC
Confidence 57999999996431 111122 21 222221 1257788899875321 2224444444442 23567889999753
No 374
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.17 E-value=9.1e-06 Score=67.85 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.8
Q ss_pred CCCCCCEEEEecCCCCchhhHHHHHhcc
Q 026538 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...+...|.|+|.+|+|||||++.+++.
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3356789999999999999999888764
No 375
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.17 E-value=1.6e-05 Score=60.28 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=18.0
Q ss_pred EEEecCCCCchhhHHHHHhc
Q 026538 95 IAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~ 114 (237)
+.++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78899999999999988874
No 376
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.16 E-value=1.7e-05 Score=69.79 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..-+|+++|++|+||||++..|.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999988764
No 377
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=1.6e-05 Score=71.46 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=61.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc-------cceeecc-CC-C-C---------ceEEEEEEE--------------cC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ-------WGVVRTS-DK-P-G---------LTQTINFFK--------------LG 137 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~-------~~~~~~~-~~-~-g---------~t~~~~~~~--------------~~ 137 (237)
....|+|+|++|+||||++..|... ..+..++ +. . + ....+.+.. .+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 3458999999999999999888752 1122111 11 0 0 000011111 14
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
..+.||||||..... .. ..+....+ .. .. ....++|+++....... ..+++.+... .+.-+|+||+|..
T Consensus 429 ~DLVLIDTaG~s~~D-~~-l~eeL~~L-~a----a~-~~a~lLVLpAtss~~Dl-~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 429 YKLVLIDTAGMGQRD-RA-LAAQLNWL-RA----AR-QVTSLLVLPANAHFSDL-DEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred CCEEEecCCCcchhh-HH-HHHHHHHH-HH----hh-cCCcEEEEECCCChhHH-HHHHHHHHhh-CCeEEEEecCcCc
Confidence 679999999975311 11 11111111 11 11 23467778776432222 2344444433 4677999999974
No 378
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=3.2e-05 Score=66.18 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=27.0
Q ss_pred hhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhc
Q 026538 71 FRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
+.....++......-+..+...-.|+++|-.|+||||.+-.|..
T Consensus 80 f~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 80 FDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred HHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHH
Confidence 44444444333333333333444678999999999999877763
No 379
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.12 E-value=1.7e-05 Score=60.43 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=41.7
Q ss_pred HHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHH
Q 026538 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~ 221 (237)
|.++.+..... +|++++|+|++.+....+..+...+...+.|+++|+||+|+.+....
T Consensus 2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~ 59 (156)
T cd01859 2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVL 59 (156)
T ss_pred HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHH
Confidence 34444444443 89999999998766555556666666668999999999999765443
No 380
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.12 E-value=8.4e-06 Score=63.35 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=45.0
Q ss_pred cEEEEEEeCCCCCChhHHHHHHH--HHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538 176 KRVCLLIDTKWGVKPRDHELISL--MERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV 231 (237)
Q Consensus 176 d~v~~vvd~~~~~~~~~~~~~~~--l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~ 231 (237)
|+|++|+|+..++...+..+.+. +...+.|+++|+||+|+.+++.+..+.+.+++.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence 78999999988777777777776 445578999999999999888777777766554
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.10 E-value=5.5e-05 Score=58.60 Aligned_cols=71 Identities=24% Similarity=0.195 Sum_probs=39.0
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHH-HhcCCcEEEEEecCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKTDT 215 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l-~~~~~piilv~NK~Dl 215 (237)
+..+.++||||.... ....+ .. +..+.. ....+.+++|+|+... ....+....+ ...+ ..-+|+||+|.
T Consensus 82 ~~d~viiDt~g~~~~-~~~~l----~~-l~~l~~-~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQI-DENLM----EE-LKKIKR-VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchh-hHHHH----HH-HHHHHh-hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-CCEEEEECCcC
Confidence 456899999996421 11111 11 122211 1237999999998533 2222333333 3334 46788899997
Q ss_pred CC
Q 026538 216 VF 217 (237)
Q Consensus 216 ~~ 217 (237)
..
T Consensus 152 ~~ 153 (173)
T cd03115 152 DA 153 (173)
T ss_pred CC
Confidence 64
No 382
>PRK10867 signal recognition particle protein; Provisional
Probab=98.10 E-value=5.8e-05 Score=66.77 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=36.6
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+..+.|+||||.... .+..-.....+.. . -..+.+++|+|+..+ .......+.+...-...-+|+||.|..
T Consensus 183 ~~DvVIIDTaGrl~~--d~~lm~eL~~i~~----~-v~p~evllVlda~~g--q~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHI--DEELMDELKAIKA----A-VNPDEILLVVDAMTG--QDAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCccc--CHHHHHHHHHHHH----h-hCCCeEEEEEecccH--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 456999999996431 1111111122211 1 126778999997532 222333333332111245778999854
No 383
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.09 E-value=3.9e-06 Score=68.04 Aligned_cols=89 Identities=22% Similarity=0.251 Sum_probs=61.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..+|.++|.|++||||++..|.+.. ..+....++|-.. .....+.++.+.|.||+.+...... .--++.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgk------grg~qv 130 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK------GRGKQV 130 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccCC------CCccEE
Confidence 3489999999999999999999984 5566666655433 2334588899999999866421110 111233
Q ss_pred HhccccccEEEEEEeCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGV 188 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~ 188 (237)
+.....|+++++|+|+..++
T Consensus 131 iavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 131 IAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred EEEeecccEEEEEeeccCcc
Confidence 34445599999999986543
No 384
>PRK01889 GTPase RsgA; Reviewed
Probab=98.04 E-value=5.8e-06 Score=71.60 Aligned_cols=57 Identities=30% Similarity=0.332 Sum_probs=38.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeecc-------CCCCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-------~~~g~t~~~~~~~~~~~~~liDTpG~~~ 150 (237)
-+++++|.+|+|||||+|.|++... ...+ ....+|.............++||||+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRE 259 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhh
Confidence 4899999999999999999998632 1111 1122444444444444457889999854
No 385
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.04 E-value=9.2e-05 Score=65.45 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=37.0
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+..+.|+||||.... .+..-.....+. .. -..+.+++|+|+..+ .........+...-...-+|+||.|..
T Consensus 182 ~~DvVIIDTaGr~~~--d~~l~~eL~~i~----~~-~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI--DEELMEELAAIK----EI-LNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCcccc--CHHHHHHHHHHH----Hh-hCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 456999999996431 111111122221 11 127889999998633 222333333332112345678898854
No 386
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=6.1e-05 Score=66.01 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=59.5
Q ss_pred CEEEEecCCCCchhhHHHHHhccc------ceeecc-CC--CC---------ceEEEEEEE-------------cCCeEE
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW------GVVRTS-DK--PG---------LTQTINFFK-------------LGTKLC 141 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~------~~~~~~-~~--~g---------~t~~~~~~~-------------~~~~~~ 141 (237)
..++++|++||||||++..|.... .+..++ +. .+ ....+.+.. .+..+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 468899999999999998887531 111111 11 00 000001110 256789
Q ss_pred EEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 142 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 142 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+|||||+.... ...+ +.+..+.... . .....-+++|+|+..+. ....++.+..... -+--+|+||.|-.
T Consensus 304 LIDTaGr~~rd-~~~l-~eL~~~~~~~-~-~~~~~e~~LVLsAt~~~-~~~~~~~~~f~~~-~~~glIlTKLDEt 372 (432)
T PRK12724 304 LIDTAGYSHRN-LEQL-ERMQSFYSCF-G-EKDSVENLLVLSSTSSY-HHTLTVLKAYESL-NYRRILLTKLDEA 372 (432)
T ss_pred EEeCCCCCccC-HHHH-HHHHHHHHhh-c-CCCCCeEEEEEeCCCCH-HHHHHHHHHhcCC-CCCEEEEEcccCC
Confidence 99999975321 1111 2222222211 0 01134678899987542 1223333333222 2346778888864
No 387
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.99 E-value=8.6e-05 Score=59.08 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=20.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+|+++|++|+|||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999988864
No 388
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=9.8e-05 Score=64.47 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
...|+++|++|+||||.+..|..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999987764
No 389
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=3.9e-05 Score=66.36 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
+...++++|++||||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999988874
No 390
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.97 E-value=9e-05 Score=55.46 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=60.1
Q ss_pred EEecCCCCchhhHHHHHhccc-----ceeecc-CCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 96 AFAGRSNVGKSSMLNALTRQW-----GVVRTS-DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 96 ~lvG~~~~GKSTLin~L~~~~-----~~~~~~-~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
+.-|..|+||||+--.+.... ....+. +..+. ...+.+.++|||+... .. ....+..
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~-------~~~yd~VIiD~p~~~~----~~----~~~~l~~-- 66 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA-------NLDYDYIIIDTGAGIS----DN----VLDFFLA-- 66 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC-------CCCCCEEEEECCCCCC----HH----HHHHHHh--
Confidence 345789999999976655331 111111 11111 1126799999998532 10 1112222
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
+|.++++++.+..--......++.+... ..++.+|+|+++. ..+..+..+.+++
T Consensus 67 -----aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~--~~~~~~~~~~~~~ 122 (139)
T cd02038 67 -----ADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES--PKEGKKVFKRLSN 122 (139)
T ss_pred -----CCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC--HHHHHHHHHHHHH
Confidence 8999999987632111223444455332 4578899999973 3334444444444
No 391
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.97 E-value=3.2e-05 Score=61.01 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=42.7
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-----HHHHHHHHhcCCcEEEEEec
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-----HELISLMERSQTKYQVVLTK 212 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-----~~~~~~l~~~~~piilv~NK 212 (237)
..+.++|.||..+-.+.-.+ ...+++.... ..---+++|++|+.--+.... ...+..+-...+|-|=|++|
T Consensus 98 ddylifDcPGQIELytH~pV---m~~iv~hl~~-~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPV---MPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChh---HHHHHHHHhc-ccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhH
Confidence 45899999997653322222 1222222111 111245778888753221111 23334444568999999999
Q ss_pred CCCCCh
Q 026538 213 TDTVFP 218 (237)
Q Consensus 213 ~Dl~~~ 218 (237)
+|++..
T Consensus 174 MDLlk~ 179 (273)
T KOG1534|consen 174 MDLLKD 179 (273)
T ss_pred HHHhhh
Confidence 999865
No 392
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.95 E-value=3.2e-05 Score=58.90 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=38.4
Q ss_pred cEEEEEEeCCCCCChhHHHHH-HHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538 176 KRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (237)
Q Consensus 176 d~v~~vvd~~~~~~~~~~~~~-~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l 228 (237)
|++++|+|+..+.......+. ..+...++|+++|+||+|+.+.++....+..+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~ 54 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYL 54 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHH
Confidence 689999999876655555444 45556689999999999998766554444334
No 393
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.94 E-value=6e-05 Score=65.30 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeecc-CCCCceEEE--------------------EEEE------------cCC
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTI--------------------NFFK------------LGT 138 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-~~~g~t~~~--------------------~~~~------------~~~ 138 (237)
...|++||++||||||.+-.|.......... ...-.|.|. .... ...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 4589999999999999987776542100000 001111110 0000 146
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.+.||||.|.... +...+ .-+..|+... ...-+++|+++... .....+++..+...++ --+++||.|...
T Consensus 283 d~ILVDTaGrs~~-D~~~i-----~el~~~~~~~-~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i-~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQY-DKEKI-----EELKELIDVS-HSIEVYLVLSATTK-YEDLKEIIKQFSLFPI-DGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCcc-CHHHH-----HHHHHHHhcc-ccceEEEEEecCcc-hHHHHHHHHHhccCCc-ceeEEEcccccC
Confidence 7999999996531 11111 2233444433 23456677776522 1222445555544322 246789999753
No 394
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=6.3e-05 Score=70.46 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.|+|+|++|+||||++..|.+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 47899999999999999988864
No 395
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.93 E-value=0.0001 Score=65.30 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=60.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc-------cceeeccCCCCc--------e----EEEEEE--------------EcCC
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ-------WGVVRTSDKPGL--------T----QTINFF--------------KLGT 138 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~-------~~~~~~~~~~g~--------t----~~~~~~--------------~~~~ 138 (237)
...++|+|++||||||++..|... ..+..++.-+.. + ..+.+. ..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 348899999999999988776542 112211111100 0 000000 0146
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.+.||||||.... ... ....+..++. ......-+++|+++... ..+ .++++.+...+ +--+|+||+|...
T Consensus 301 DlVlIDt~G~~~~-d~~-~~~~L~~ll~----~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 301 DVILIDTAGRSQR-DKR-LIEELKALIE----FSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLP-LDGLIFTKLDETS 371 (424)
T ss_pred CEEEEeCCCCCCC-CHH-HHHHHHHHHh----ccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCC-CCEEEEecccccc
Confidence 7999999997531 111 1112222222 11123567788887633 222 33444444332 2368899999753
No 396
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.91 E-value=7.5e-05 Score=55.98 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=67.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCC---ceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g---~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..+|.++|++..|||||+-...+...-.......| ..+.+.+......+.+||.-|..+ +...+.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~----------~~n~lP-- 87 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE----------FINMLP-- 87 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHh----------hhccCc--
Confidence 36899999999999999988887632111111122 122222333356688999999532 111211
Q ss_pred HhccccccEEEEEEeCCCCCC-hhHHHHHHHHHhcCCc--EEEEEecCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTK--YQVVLTKTDTV 216 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~-~~~~~~~~~l~~~~~p--iilv~NK~Dl~ 216 (237)
-...++-+|+|++|-..+.+ ..-.+|.++.+..+.- -++|++|-|+.
T Consensus 88 -iac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 88 -IACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred -eeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 11223677899999765422 2235677777665422 46789999975
No 397
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.00011 Score=61.99 Aligned_cols=120 Identities=22% Similarity=0.290 Sum_probs=61.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc-----c-------------------------eeeccCCCCceEEEEEE-------
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW-----G-------------------------VVRTSDKPGLTQTINFF------- 134 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~-------------------------~~~~~~~~g~t~~~~~~------- 134 (237)
...|+++|-.|+||||.|-.|.... . +..++...|.......+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak 218 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK 218 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence 4577899999999999998877421 0 01111111111110000
Q ss_pred EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcccc-ccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecC
Q 026538 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS-LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213 (237)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~ 213 (237)
..+..+.|+||+|-..+ ...+......+.+-.-..... .+-+++++|+.-+ .......+.+...-.---+++||+
T Consensus 219 ar~~DvvliDTAGRLhn--k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav~l~GiIlTKl 294 (340)
T COG0552 219 ARGIDVVLIDTAGRLHN--KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAVGLDGIILTKL 294 (340)
T ss_pred HcCCCEEEEeCcccccC--chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhcCCceEEEEec
Confidence 02677999999995432 222333334433332222221 3458888898765 222333333333211234677888
Q ss_pred CC
Q 026538 214 DT 215 (237)
Q Consensus 214 Dl 215 (237)
|-
T Consensus 295 Dg 296 (340)
T COG0552 295 DG 296 (340)
T ss_pred cc
Confidence 84
No 398
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.91 E-value=5.1e-05 Score=63.51 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=39.9
Q ss_pred cccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l 228 (237)
...+|+|++|+|+..+....+..+.+.+. +.|+++|+||+|+.++.+.....+.+
T Consensus 19 l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~ 73 (276)
T TIGR03596 19 LKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYF 73 (276)
T ss_pred HhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHH
Confidence 33499999999998777666666666553 68999999999998665444443333
No 399
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.0005 Score=60.00 Aligned_cols=44 Identities=11% Similarity=0.262 Sum_probs=26.4
Q ss_pred hhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhc
Q 026538 71 FRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
..+....+......-.......-.|+++|-.|+||||..-.|..
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH
Confidence 44445555532222222222334778999999999999876653
No 400
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=4.4e-05 Score=63.43 Aligned_cols=130 Identities=21% Similarity=0.276 Sum_probs=79.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee-------------------------ccCCCCceEEEEE------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------------------TSDKPGLTQTINF------------ 133 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-------------------------~~~~~g~t~~~~~------------ 133 (237)
..++|.-+|....||||++.++.|-+.+-. ..+.|++.+....
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 357999999999999999999997531100 0111211111100
Q ss_pred ----EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCC-CCChhHHHHHHHHHhcC-CcEE
Q 026538 134 ----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQ-TKYQ 207 (237)
Q Consensus 134 ----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~~-~pii 207 (237)
+..-..+.++|.||+.- ++...+....-.|++++++-++. ..+++..+.+..+.-.. ..++
T Consensus 117 ~~~~~klvRHVSfVDCPGHDi-------------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhii 183 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDI-------------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHII 183 (466)
T ss_pred CCCceEEEEEEEeccCCchHH-------------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEE
Confidence 00012378999999731 22333333333588888887654 34455555554444332 5689
Q ss_pred EEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 208 VVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 208 lv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
++-||+|+..+++..+..+++.+.++
T Consensus 184 ilQNKiDli~e~~A~eq~e~I~kFi~ 209 (466)
T KOG0466|consen 184 ILQNKIDLIKESQALEQHEQIQKFIQ 209 (466)
T ss_pred EEechhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999988888777777777654
No 401
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.82 E-value=0.00051 Score=61.48 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
....|+|+|..++|||||+.+|.+.+
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e 49 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE 49 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC
Confidence 44699999999999999999997663
No 402
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.82 E-value=0.00046 Score=57.43 Aligned_cols=118 Identities=22% Similarity=0.297 Sum_probs=62.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc-----ceeeccC--CC-C---------ceEEEEEEE-----------------c
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--KP-G---------LTQTINFFK-----------------L 136 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~--~~-g---------~t~~~~~~~-----------------~ 136 (237)
...+++++|++|+||||++..+.... ....++. .+ + ...++.+.. .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 44699999999999999998876531 1111111 00 0 000111111 1
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+..+.++||||.... ....+++ +..+. ... ..+.+++|+|+.... ....++++.+... .+--+++||.|..
T Consensus 154 ~~D~ViIDt~Gr~~~-~~~~l~e-l~~~~----~~~-~~~~~~LVl~a~~~~-~d~~~~~~~f~~~-~~~~~I~TKlDet 224 (270)
T PRK06731 154 RVDYILIDTAGKNYR-ASETVEE-MIETM----GQV-EPDYICLTLSASMKS-KDMIEIITNFKDI-HIDGIVFTKFDET 224 (270)
T ss_pred CCCEEEEECCCCCcC-CHHHHHH-HHHHH----hhh-CCCeEEEEEcCccCH-HHHHHHHHHhCCC-CCCEEEEEeecCC
Confidence 467999999996531 1111221 22222 111 256789999976321 2223444444432 3346788999975
Q ss_pred C
Q 026538 217 F 217 (237)
Q Consensus 217 ~ 217 (237)
.
T Consensus 225 ~ 225 (270)
T PRK06731 225 A 225 (270)
T ss_pred C
Confidence 3
No 403
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.79 E-value=0.0001 Score=57.08 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=35.2
Q ss_pred cccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHH
Q 026538 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~ 221 (237)
...+|++++|+|++.+....+..++..+. +.|+++|+||+|+.++.+.
T Consensus 17 i~~aD~il~v~D~~~~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~~~~ 64 (171)
T cd01856 17 LKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKKT 64 (171)
T ss_pred HhhCCEEEEEeeccCccCcCChhhHhHhc--CCCEEEEEehhhcCChHHH
Confidence 34499999999998766555555555442 5799999999999765443
No 404
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.76 E-value=0.00017 Score=58.02 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=29.7
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHhcC-CcEEEEEecCCCC
Q 026538 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTV 216 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~Dl~ 216 (237)
+.+|.++.|+|.+..--.....+-+.....+ .++.+|+||+|--
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 3489999999987432222233334444567 8999999999954
No 405
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.76 E-value=5.1e-05 Score=67.91 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=62.8
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceee---ccCCCCceEEEEEEEc-CCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~---~~~~~g~t~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
...+.+.++|+.++|||.|+++++|+ .... .+..+..+........ ...+.+-|.+-. .. .+.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr-~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~-----------~~l 489 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGR-SMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQ-----------DFL 489 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhcc-ccccccccCCCCceeeeeeeeccccceEEEeecCcc-cc-----------ccc
Confidence 45678899999999999999999997 2222 1111222222222221 223444444422 10 000
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhHHH-HHHH-HHhcCCcEEEEEecCCCCCh
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISL-MERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~-~~~~-l~~~~~piilv~NK~Dl~~~ 218 (237)
. .....||++++++|++++-...-.. +.+. ......|+++|.+|+|+.+.
T Consensus 490 ~---~ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 490 T---SKEAACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEV 541 (625)
T ss_pred c---CccceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchh
Confidence 0 0002299999999998543322211 1111 11247999999999998643
No 406
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.73 E-value=0.00037 Score=62.45 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++|+|++||||||++..|.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 347899999999999999988853
No 407
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.00069 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..+|.+.|+||+||||++..+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 469999999999999999888753
No 408
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.66 E-value=0.00015 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+|+++|..|+|||+|+.++...
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcC
Confidence 37899999999999999998655
No 409
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.66 E-value=2.9e-05 Score=71.97 Aligned_cols=75 Identities=20% Similarity=0.358 Sum_probs=43.2
Q ss_pred eEEEEeCCCCCCc---ccchHHHHHHHHHHHHHHhccccccEEEEEEeCC-CCC-ChhHHHHHHHHHhcCCcEEEEEecC
Q 026538 139 KLCLVDLPGYGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-WGV-KPRDHELISLMERSQTKYQVVLTKT 213 (237)
Q Consensus 139 ~~~liDTpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~-~~~-~~~~~~~~~~l~~~~~piilv~NK~ 213 (237)
+++++|+||+... .....+......++..|+.. .+.+++.+... ..+ +.....+.+.....+...+.|++|.
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~---~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~ 209 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEK---PNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKF 209 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccc---cchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhH
Confidence 4899999998653 34455677777888887765 55555555432 111 1222333333333345566666666
Q ss_pred CCC
Q 026538 214 DTV 216 (237)
Q Consensus 214 Dl~ 216 (237)
|+.
T Consensus 210 Dlm 212 (657)
T KOG0446|consen 210 DFM 212 (657)
T ss_pred Hhh
Confidence 654
No 410
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=9.5e-05 Score=63.60 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCCCCEEEEecCCCCchhhHHHHHhcccce-----------------------------eeccCCCCceEEEE---EEEc
Q 026538 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTIN---FFKL 136 (237)
Q Consensus 89 ~~~~~~i~lvG~~~~GKSTLin~L~~~~~~-----------------------------~~~~~~~g~t~~~~---~~~~ 136 (237)
+....+++|+|...+||||+-..|+...+. ..-....|.|..+. +...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 345679999999999999998776642100 00011122333332 2223
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-----CCh--hHHHHHHHHHhcC-CcEEE
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----VKP--RDHELISLMERSQ-TKYQV 208 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-----~~~--~~~~~~~~l~~~~-~piil 208 (237)
...++++|+||+-. ++..++.....+|+.++|+.+..+ +.. +..+.....+..+ ...|+
T Consensus 156 ~~~ftiLDApGHk~-------------fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv 222 (501)
T KOG0459|consen 156 NKRFTILDAPGHKS-------------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV 222 (501)
T ss_pred ceeEEeeccCcccc-------------cchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEE
Confidence 56799999999742 344455555558888888876432 111 1122222222223 46889
Q ss_pred EEecCCCCChHH
Q 026538 209 VLTKTDTVFPID 220 (237)
Q Consensus 209 v~NK~Dl~~~~~ 220 (237)
++||+|-.....
T Consensus 223 ~vNKMddPtvnW 234 (501)
T KOG0459|consen 223 LINKMDDPTVNW 234 (501)
T ss_pred EEEeccCCccCc
Confidence 999999765433
No 411
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.65 E-value=0.00017 Score=61.95 Aligned_cols=63 Identities=17% Similarity=0.050 Sum_probs=51.1
Q ss_pred ccccccEEEEEEeCCCCCChhHHHHHHHHHh-c-CCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-~-~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
..+.+|+|+.|+|+.+++.....++-+++.. . +...|+|+||+|+++.+.++.++..++..+.
T Consensus 143 vve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 143 VVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGP 207 (435)
T ss_pred HHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence 3344899999999999887777666666642 2 4889999999999999999999998887654
No 412
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.64 E-value=0.00024 Score=59.77 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=38.6
Q ss_pred cccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHH
Q 026538 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM 226 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~ 226 (237)
...+|+|++|+|+..++...+..+.+.+. +.|+++|+||+|+.+........+
T Consensus 22 l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~ 74 (287)
T PRK09563 22 LKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIE 74 (287)
T ss_pred hhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHH
Confidence 33499999999998777666655555543 689999999999976644433333
No 413
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.56 E-value=0.001 Score=48.49 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.6
Q ss_pred EEEecCCCCchhhHHHHHhcc
Q 026538 95 IAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~ 115 (237)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999887
No 414
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.53 E-value=0.00061 Score=58.32 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=44.2
Q ss_pred EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC--CChhH---------HHHHHHHHh--
Q 026538 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRD---------HELISLMER-- 201 (237)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~--~~~~~---------~~~~~~l~~-- 201 (237)
..+.++.++|.+|... -+..|..... ++++|+||+..+.. ...++ ..+++.+..
T Consensus 192 ~k~~~f~~~DvGGQRs------eRrKWihcFe-------~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 192 IKGLKFRMFDVGGQRS------ERKKWIHCFE-------DVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred eCCCceEEEeCCCcHH------HhhhHHHhhc-------CCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 3467799999999532 2334444322 38999999986641 11111 233344433
Q ss_pred --cCCcEEEEEecCCCCCh
Q 026538 202 --SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 202 --~~~piilv~NK~Dl~~~ 218 (237)
.+.++++.+||.|+..+
T Consensus 259 ~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEE 277 (354)
T ss_pred ccccCcEEEEeecHHHHHH
Confidence 26889999999999643
No 415
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.52 E-value=6e-05 Score=61.11 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
=.|+++|++|||||||+|.+.|-.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999864
No 416
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.52 E-value=2.6e-06 Score=65.56 Aligned_cols=114 Identities=14% Similarity=0.183 Sum_probs=66.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
...+++++|.-|+||||++.+.+....-...-..-|.......... -.++.|||.+|.. .+..+.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQe----------rfg~mtr 93 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQE----------RFGNMTR 93 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhh----------hhcceEE
Confidence 4578999999999999999887765210000011111111111111 2357899999943 1233444
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-------cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~piilv~NK~Dl~~ 217 (237)
-|++. +.+.++|+|.+...+.+. ..+.+.+.. ..+|+++..||||+-.
T Consensus 94 Vyyke---a~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~ 149 (229)
T KOG4423|consen 94 VYYKE---AHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK 149 (229)
T ss_pred EEecC---CcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh
Confidence 44444 888899999876554433 233333221 2467899999999853
No 417
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.51 E-value=0.00019 Score=57.57 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=39.1
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-----HHHHHHHHhcCCcEEEEEec
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-----HELISLMERSQTKYQVVLTK 212 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-----~~~~~~l~~~~~piilv~NK 212 (237)
....++|.||..+-..... ....+++ ++....---.++-++|+...-.+.. .-.+..+.....|-+=|+.|
T Consensus 97 ~~Y~lFDcPGQVELft~h~---~l~~I~~-~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHD---SLNKIFR-KLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSK 172 (290)
T ss_pred CcEEEEeCCCcEEEEeccc---hHHHHHH-HHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhH
Confidence 4589999999654222211 1112222 1222221234556677643211211 11222233457899999999
Q ss_pred CCCCChH
Q 026538 213 TDTVFPI 219 (237)
Q Consensus 213 ~Dl~~~~ 219 (237)
+|+....
T Consensus 173 ~Dl~~~y 179 (290)
T KOG1533|consen 173 ADLLKKY 179 (290)
T ss_pred hHHHHhh
Confidence 9997543
No 418
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.00051 Score=55.45 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccc---eeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~---~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.|+|+++|.--+||||+-...+..-. ........-.|++.. ...-..+.+||.||..+.....- .+..+.+.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~i-s~sfinf~v~dfPGQ~~~Fd~s~---D~e~iF~~- 101 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHI-SNSFINFQVWDFPGQMDFFDPSF---DYEMIFRG- 101 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhh-hhhhcceEEeecCCccccCCCcc---CHHHHHhc-
Confidence 47899999999999999877665410 000111111122110 00124588999999644311110 01122222
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHh-----cCCcEEEEEecCCCCChH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~~ 219 (237)
+.+++||+|+.+...+.-..+...+.. -++.+=+.+.|+|-+.++
T Consensus 102 ------~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 102 ------VGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred ------cCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 788999999864322211111111221 146677889999987654
No 419
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.45 E-value=0.0048 Score=47.62 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=38.1
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCC
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 216 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~ 216 (237)
.+.++|||+.... . ....+. .+|.++++++....-......+++.+...+.+ ..+|+|++|..
T Consensus 64 d~viiD~p~~~~~---~-----~~~~l~-------~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER---G-----FITAIA-------PADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH---H-----HHHHHH-------hCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 6999999974321 0 011111 28999999987643222233455555554444 67899999864
No 420
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.44 E-value=0.0017 Score=54.43 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=25.5
Q ss_pred CCCCCCEEEEecCCCCchhhHHHHHhccc
Q 026538 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+..+.|+++++|++|.|||++++.+...+
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 33567899999999999999999999874
No 421
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.40 E-value=0.00019 Score=45.67 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.8
Q ss_pred CEEEEecCCCCchhhHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALT 113 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~ 113 (237)
...+|.|++|+|||||+.++.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999875
No 422
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.39 E-value=0.0014 Score=57.15 Aligned_cols=141 Identities=18% Similarity=0.261 Sum_probs=75.1
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccc------------ce--eeccCCCCc---eEEEEEEE-----------cCCeEE
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQW------------GV--VRTSDKPGL---TQTINFFK-----------LGTKLC 141 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~------------~~--~~~~~~~g~---t~~~~~~~-----------~~~~~~ 141 (237)
.+.+-+.+||+.-+|||||+.++...- +. .......|. |....|.. ...++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 466799999999999999999987531 00 001111221 22222211 246789
Q ss_pred EEeCCCCCCcc--------cchHHHHHHHH----HHHH-HHhccc----c-ccEEEEEEeCCC-CCC-----hhHHHHHH
Q 026538 142 LVDLPGYGFAY--------AKEEVKDAWEE----LVKE-YVSTRV----S-LKRVCLLIDTKW-GVK-----PRDHELIS 197 (237)
Q Consensus 142 liDTpG~~~~~--------~~~~~~~~~~~----~~~~-~~~~~~----~-~d~v~~vvd~~~-~~~-----~~~~~~~~ 197 (237)
++|+-||.-.. ....+...|.+ +..+ -+.+.. + --++++-.|.+- .+. +.....++
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99999973110 00001111110 1111 111111 1 233555567552 222 22356788
Q ss_pred HHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538 198 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV 231 (237)
Q Consensus 198 ~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~ 231 (237)
.|+..++|+++++|-.+= ...+..++.+++.+.
T Consensus 175 ELk~igKPFvillNs~~P-~s~et~~L~~eL~ek 207 (492)
T PF09547_consen 175 ELKEIGKPFVILLNSTKP-YSEETQELAEELEEK 207 (492)
T ss_pred HHHHhCCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 899999999999998873 344555666666554
No 423
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.37 E-value=0.00042 Score=54.53 Aligned_cols=42 Identities=14% Similarity=-0.115 Sum_probs=29.7
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 175 ~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
+|++++|+|+..........+. ....+.|+++|+||+|+.+.
T Consensus 35 ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 35 KALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLPK 76 (190)
T ss_pred CcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCCC
Confidence 8999999998764433333331 12346899999999999754
No 424
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.31 E-value=0.0002 Score=53.49 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=19.6
Q ss_pred EEEecCCCCchhhHHHHHhcc
Q 026538 95 IAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~ 115 (237)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999986
No 425
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.30 E-value=0.00017 Score=58.19 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
=.|+|+|++|||||||+|.+-+-.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999998763
No 426
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.30 E-value=0.00071 Score=42.11 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=23.9
Q ss_pred ccEEEEEEeCCCC--CChh-HHHHHHHHHhc--CCcEEEEEecCC
Q 026538 175 LKRVCLLIDTKWG--VKPR-DHELISLMERS--QTKYQVVLTKTD 214 (237)
Q Consensus 175 ~d~v~~vvd~~~~--~~~~-~~~~~~~l~~~--~~piilv~NK~D 214 (237)
.+.|+|++|.+.. .+-. ...+++.++.. +.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 6889999998753 3222 24566666653 799999999998
No 427
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.29 E-value=0.00018 Score=55.75 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
..-.++|+|++|+|||||+|.+.|-.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc
Confidence 34489999999999999999999863
No 428
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.28 E-value=0.00021 Score=52.99 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.1
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++|+|++|+|||||++.|+|..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 478999999999999999999984
No 429
>PRK13695 putative NTPase; Provisional
Probab=97.27 E-value=0.0039 Score=48.31 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+|+++|.+|+|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999987654
No 430
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.26 E-value=0.0013 Score=56.95 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...+++++|+.+||||||...|++.
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 4579999999999999998777654
No 431
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.26 E-value=0.0024 Score=45.39 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=51.5
Q ss_pred EEEe-cCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538 95 IAFA-GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (237)
Q Consensus 95 i~lv-G~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
|+++ +..|+||||+.-.|...- .......-.-.|.... .+..+.++|||+.... .....+..
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~--~~~~~~~~~l~d~d~~-~~~D~IIiDtpp~~~~--------~~~~~l~~------ 64 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVAL--AKEAGRRVLLVDLDLQ-FGDDYVVVDLGRSLDE--------VSLAALDQ------ 64 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHH--HhcCCCcEEEEECCCC-CCCCEEEEeCCCCcCH--------HHHHHHHH------
Confidence 3444 579999999876665431 1000000000011000 1237999999985431 01112222
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHhcC----CcEEEEEec
Q 026538 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQ----TKYQVVLTK 212 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~----~piilv~NK 212 (237)
+|.++++++.+..-......+++.+...+ .++.+|+|+
T Consensus 65 -aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 65 -ADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred -cCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 89999999876432222344555554433 357788885
No 432
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.00035 Score=59.68 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.2
Q ss_pred EEEEecCCCCchhhHHHHHhccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-++++|++|||||||++.+.|-+
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 433
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.24 E-value=0.00025 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999886
No 434
>PRK12289 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.0014 Score=56.59 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=37.0
Q ss_pred ccEEEEEEeCCCC-CChh-HHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538 175 LKRVCLLIDTKWG-VKPR-DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (237)
Q Consensus 175 ~d~v~~vvd~~~~-~~~~-~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l 228 (237)
+|.+++|+|...+ +... ...++..+...++|+++|+||+|+.+..+.....+.+
T Consensus 90 vD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~ 145 (352)
T PRK12289 90 ADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRL 145 (352)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHH
Confidence 8999999998643 2332 1344444555689999999999998766554444433
No 435
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.22 E-value=0.0029 Score=43.19 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=41.2
Q ss_pred EEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcccc
Q 026538 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (237)
+++.|..|+||||+...+...- .. . |. .+... + .+.++|+|+........ .......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l--~~-~---g~--~v~~~--~-d~iivD~~~~~~~~~~~------------~~~~~~~ 58 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL--AK-R---GK--RVLLI--D-DYVLIDTPPGLGLLVLL------------CLLALLA 58 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HH-C---CC--eEEEE--C-CEEEEeCCCCccchhhh------------hhhhhhh
Confidence 6788999999999998887652 11 1 10 11111 1 79999999864311000 0111112
Q ss_pred ccEEEEEEeCCC
Q 026538 175 LKRVCLLIDTKW 186 (237)
Q Consensus 175 ~d~v~~vvd~~~ 186 (237)
+|.++++++...
T Consensus 59 ~~~vi~v~~~~~ 70 (99)
T cd01983 59 ADLVIIVTTPEA 70 (99)
T ss_pred CCEEEEecCCch
Confidence 899999998764
No 436
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.17 E-value=0.0039 Score=45.73 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++++|++|+|||+|++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999887
No 437
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.15 E-value=0.00045 Score=54.35 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
...|+|+|++|||||||++.|+...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468899999999999999998763
No 438
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.15 E-value=0.00033 Score=55.74 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.=.++++|++|||||||+.+|-+-+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc
Confidence 3489999999999999999998764
No 439
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0037 Score=55.20 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=41.5
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhcCCc---EEEEEe
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTK---YQVVLT 211 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~~~p---iilv~N 211 (237)
+..+.|+||+|-... ...+......++. ....|.|++|-.+--+-...+ ..+-+.+.....| --++++
T Consensus 466 gfDVvLiDTAGR~~~--~~~lm~~l~k~~~-----~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~lt 538 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHN--NAPLMTSLAKLIK-----VNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLT 538 (587)
T ss_pred CCCEEEEeccccccC--ChhHHHHHHHHHh-----cCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEE
Confidence 677999999995432 1112222222222 234899999976543322221 3444445554444 246889
Q ss_pred cCCCCCh
Q 026538 212 KTDTVFP 218 (237)
Q Consensus 212 K~Dl~~~ 218 (237)
|+|-++.
T Consensus 539 k~dtv~d 545 (587)
T KOG0781|consen 539 KFDTVDD 545 (587)
T ss_pred eccchhh
Confidence 9997643
No 440
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0069 Score=51.51 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=22.5
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcc
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+.-.|.++|..|+|||||++.|.+.
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhcc
Confidence 35567889999999999999999876
No 441
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.06 E-value=0.00058 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|++|||||||++.|...
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 346778999999999999999764
No 442
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.0004 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.|+++|++|||||||+|.+.|-
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcC
Confidence 37889999999999999999875
No 443
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.03 E-value=0.0067 Score=49.01 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=17.1
Q ss_pred CEEEEe-cCCCCchhhHHHHHhc
Q 026538 93 PEIAFA-GRSNVGKSSMLNALTR 114 (237)
Q Consensus 93 ~~i~lv-G~~~~GKSTLin~L~~ 114 (237)
+.|.++ ...|+||||++-.|.+
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs 24 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALAS 24 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHH
Confidence 455555 6799999999988875
No 444
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.02 E-value=0.0026 Score=52.81 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=41.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccC-CCCceEEEEEEE------cCCeEEEEeCCCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFK------LGTKLCLVDLPGYGF 150 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~t~~~~~~~------~~~~~~liDTpG~~~ 150 (237)
....|.|+|+..+|||.|+|.|++......+++ ...+|..+-+.. .+..+.++||.|+.+
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 345778999999999999999998632222333 334666653332 145699999999977
No 445
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.01 E-value=0.00064 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..-.++++|++|+|||||++.++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3448999999999999999999753
No 446
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.01 E-value=0.0006 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=22.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-.++++|++|+|||||++.|.|.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 448999999999999999999987
No 447
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.01 E-value=0.00055 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
|.|+|+|+.|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998875
No 448
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.98 E-value=0.00057 Score=54.65 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|+|..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999863
No 449
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.97 E-value=0.00059 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|+|++|||||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999875
No 450
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.00059 Score=55.57 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999863
No 451
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.96 E-value=0.00072 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|.|..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4489999999999999999999863
No 452
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.96 E-value=0.00069 Score=53.22 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|++|+|||||+++|++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999999976
No 453
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.00066 Score=54.31 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++++|++|+|||||++.|.|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8899999999999999999986
No 454
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.94 E-value=0.015 Score=40.77 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=39.7
Q ss_pred EEEec-CCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccc
Q 026538 95 IAFAG-RSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (237)
Q Consensus 95 i~lvG-~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
|++.| ..|+||||+.-.|...- .. ...+ +.-+. ....+.+.++|+|+.... .....+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~--~~-~~~~--vl~~d-~d~~~d~viiD~p~~~~~--------~~~~~l~~------ 61 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL--AR-RGKR--VLLID-LDPQYDYIIIDTPPSLGL--------LTRNALAA------ 61 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH--Hh-CCCc--EEEEe-CCCCCCEEEEeCcCCCCH--------HHHHHHHH------
Confidence 56666 68999999976665431 11 0000 00000 011267999999986431 01122222
Q ss_pred cccEEEEEEeCCC
Q 026538 174 SLKRVCLLIDTKW 186 (237)
Q Consensus 174 ~~d~v~~vvd~~~ 186 (237)
+|.++++++.+.
T Consensus 62 -ad~viv~~~~~~ 73 (104)
T cd02042 62 -ADLVLIPVQPSP 73 (104)
T ss_pred -CCEEEEeccCCH
Confidence 899999998763
No 455
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.94 E-value=0.0027 Score=54.76 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=43.8
Q ss_pred EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC--------Ch---hHHHHHHHHHh--
Q 026538 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KP---RDHELISLMER-- 201 (237)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~---~~~~~~~~l~~-- 201 (237)
..+..+.+||..|... .+..|..+ +.. +++|+||+|.+..- .. .....++.+..
T Consensus 181 ~~~~~~~~~DvgGqr~------~R~kW~~~----f~~---v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 181 VKKLFFRMFDVGGQRS------ERKKWIHC----FDN---VTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred ECCeEEEEEecCCchh------hhhhHHHH----hCC---CCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 3467789999999532 34455443 332 89999999987421 01 11223333332
Q ss_pred --cCCcEEEEEecCCCC
Q 026538 202 --SQTKYQVVLTKTDTV 216 (237)
Q Consensus 202 --~~~piilv~NK~Dl~ 216 (237)
.+.|+++++||.|+.
T Consensus 248 ~~~~~piil~~NK~D~~ 264 (342)
T smart00275 248 WFANTSIILFLNKIDLF 264 (342)
T ss_pred cccCCcEEEEEecHHhH
Confidence 368999999999985
No 456
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.94 E-value=0.00065 Score=48.32 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred CEEEEecCCCCchhhHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALT 113 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~ 113 (237)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 368999999999999999987
No 457
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.00065 Score=54.72 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-.++++|++|+|||||++.|.|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999986
No 458
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.93 E-value=0.00066 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|+|||||++.|.|..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999863
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.93 E-value=0.00068 Score=53.22 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++|+|++|||||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999876
No 460
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.92 E-value=0.00079 Score=55.39 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-.++++|+.|||||||+++|.+-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 347899999999999999999984
No 461
>PRK08118 topology modulation protein; Reviewed
Probab=96.92 E-value=0.00075 Score=52.14 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.4
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.+|+|+|++|||||||...|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998763
No 462
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.92 E-value=0.00081 Score=54.02 Aligned_cols=25 Identities=36% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|+|..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3488999999999999999999873
No 463
>PRK07261 topology modulation protein; Provisional
Probab=96.92 E-value=0.00073 Score=52.40 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998765
No 464
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.91 E-value=0.0007 Score=54.24 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|.|..
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3488999999999999999999873
No 465
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.91 E-value=0.00074 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3478999999999999999999873
No 466
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.90 E-value=0.00072 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.|+++|+||||||||+..|...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999866
No 467
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.89 E-value=0.00084 Score=43.81 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEecCCCCchhhHHHHHhcc
Q 026538 95 IAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~ 115 (237)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999876
No 468
>PRK04195 replication factor C large subunit; Provisional
Probab=96.89 E-value=0.016 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+.++|.|++|+||||++++|+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999876
No 469
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.89 E-value=0.00089 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-.++++|++|+|||||++.|+|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348899999999999999999986
No 470
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.88 E-value=0.00074 Score=54.37 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3488999999999999999999863
No 471
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.88 E-value=0.00078 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|+|||||++.|.|..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999873
No 472
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.88 E-value=0.00076 Score=55.14 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|+|||||++.|.|..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 488999999999999999999863
No 473
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.00077 Score=54.28 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|+|||||++.|+|..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999873
No 474
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.88 E-value=0.00078 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|+|..
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999873
No 475
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.88 E-value=0.00084 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998765
No 476
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.00079 Score=53.80 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=21.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|+|||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999873
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.87 E-value=0.0011 Score=51.48 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.|+++|++|||||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 6899999999999999999986
No 478
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.87 E-value=0.0021 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|.|++|+|||||++.|.+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999876
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.87 E-value=0.00084 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..+.+.|+|++|||||||+++|...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3468899999999999999998865
No 480
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.00081 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-.++++|++|+|||||++.|+|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999986
No 481
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.85 E-value=0.001 Score=51.10 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
..-.++++|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34489999999999999999999873
No 482
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.0004 Score=54.00 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+.-+++.|++|+||||++++|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3467899999999999999999874
No 483
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.85 E-value=0.00085 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|+|||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999873
No 484
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.84 E-value=0.001 Score=53.83 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-.++++|++|+|||||++.|.|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 348899999999999999999987
No 485
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.00086 Score=54.49 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|.|..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3488999999999999999999873
No 486
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.84 E-value=0.00099 Score=52.02 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..+.|+++|.+||||||+.+.|...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999843
No 487
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.00097 Score=53.07 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
....+++|++|||||||+.+|-..+
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHHhhc
Confidence 3477999999999999998887654
No 488
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.84 E-value=0.0011 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|+|..
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3488999999999999999999873
No 489
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.83 E-value=0.018 Score=44.61 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=43.7
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
.+.+.++|||+... . .....+. .+|.+++++.....-......+++.+...+.|+.+|+||+|..
T Consensus 92 ~~d~viiDtpp~~~----~--------~~~~~l~---~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 92 GAELIIIDGPPGIG----C--------PVIASLT---GADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred CCCEEEEECcCCCc----H--------HHHHHHH---cCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 56799999996432 1 0111111 2899999998764322333556666777788999999999975
Q ss_pred C
Q 026538 217 F 217 (237)
Q Consensus 217 ~ 217 (237)
.
T Consensus 157 ~ 157 (179)
T cd03110 157 D 157 (179)
T ss_pred c
Confidence 3
No 490
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.83 E-value=0.014 Score=47.12 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..+.+++.|+||+|||||.+.+...
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHH
T ss_pred CcceEEEECCCccchhHHHHHHHhc
Confidence 4579999999999999999999876
No 491
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.83 E-value=0.00094 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|+|||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999863
No 492
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.82 E-value=0.0009 Score=54.31 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=21.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|++|+|||||++.|+|.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999986
No 493
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.82 E-value=0.0011 Score=53.41 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|+|..
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3488999999999999999999873
No 494
>PRK00098 GTPase RsgA; Reviewed
Probab=96.82 E-value=0.0051 Score=52.09 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=32.2
Q ss_pred cccEEEEEEeCCCCC-Chh-HHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 174 SLKRVCLLIDTKWGV-KPR-DHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~-~~~-~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.+|.+++|+|+..+. ... ...++..+...++|+++|+||+|+.+
T Consensus 80 niD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~ 125 (298)
T PRK00098 80 NVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLD 125 (298)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCC
Confidence 389999999986542 222 23455556667899999999999973
No 495
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.00092 Score=55.25 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++|+|++|+|||||++.|+|..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999999873
No 496
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.81 E-value=0.00094 Score=53.66 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|+|||||++.|.|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999873
No 497
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.00093 Score=54.51 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|+|||||++.|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999863
No 498
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.00094 Score=54.30 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|+|||||++.|+|..
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999873
No 499
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.001 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhhHHHHHhccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+|+|+|+|||||||+...|....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998764
No 500
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.81 E-value=0.0061 Score=52.70 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=47.2
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
+......|+|+.|+|+.++.......+-+.++.. .+.+++|+|||||++..-...++..+.+
T Consensus 208 yKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSk 271 (572)
T KOG2423|consen 208 YKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSK 271 (572)
T ss_pred HHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhh
Confidence 3444558999999999998877776666666654 4679999999999988766666665544
Done!