Query 026538
Match_columns 237
No_of_seqs 339 out of 2821
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 15:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dhe_A Probable GTP-binding pr 99.9 1.2E-24 4.2E-29 174.2 14.8 150 85-234 22-175 (223)
2 1svi_A GTP-binding protein YSX 99.9 4.6E-24 1.6E-28 167.2 14.6 149 84-232 15-163 (195)
3 3pqc_A Probable GTP-binding pr 99.9 1E-23 3.5E-28 164.8 16.3 152 81-233 12-163 (195)
4 3gee_A MNME, tRNA modification 99.9 3.7E-23 1.3E-27 183.3 8.8 176 34-221 178-361 (476)
5 3iev_A GTP-binding protein ERA 99.9 6.9E-21 2.3E-25 160.3 13.4 138 91-232 9-152 (308)
6 1wf3_A GTP-binding protein; GT 99.8 1.5E-20 5E-25 157.8 14.8 122 93-220 8-134 (301)
7 3geh_A MNME, tRNA modification 99.8 4E-21 1.4E-25 169.7 7.3 172 35-219 171-346 (462)
8 1xzp_A Probable tRNA modificat 99.8 1.8E-20 6.2E-25 166.2 8.4 162 42-218 197-365 (482)
9 1mky_A Probable GTP-binding pr 99.8 1.4E-19 4.8E-24 159.4 12.6 119 93-216 2-123 (439)
10 2hjg_A GTP-binding protein ENG 99.8 1.2E-19 4.1E-24 159.6 12.2 119 93-217 4-125 (436)
11 3t5d_A Septin-7; GTP-binding p 99.8 8.1E-19 2.8E-23 145.3 15.3 141 91-233 7-174 (274)
12 2qtf_A Protein HFLX, GTP-bindi 99.8 2.8E-19 9.5E-24 153.6 12.8 193 11-218 100-307 (364)
13 3iby_A Ferrous iron transport 99.8 4E-20 1.4E-24 151.8 6.9 121 93-218 2-125 (256)
14 2dyk_A GTP-binding protein; GT 99.8 3.6E-19 1.2E-23 134.7 11.2 119 93-218 2-123 (161)
15 4dcu_A GTP-binding protein ENG 99.8 2.3E-19 7.8E-24 158.7 11.7 121 91-217 22-145 (456)
16 3lxx_A GTPase IMAP family memb 99.8 3.5E-19 1.2E-23 144.4 11.3 128 89-222 26-164 (239)
17 2qu8_A Putative nucleolar GTP- 99.8 1.7E-18 5.9E-23 139.2 15.0 124 90-219 27-158 (228)
18 3i8s_A Ferrous iron transport 99.8 6.8E-20 2.3E-24 151.8 6.8 122 92-218 3-127 (274)
19 1pui_A ENGB, probable GTP-bind 99.8 2.1E-18 7.3E-23 136.5 14.7 144 89-232 23-166 (210)
20 2hjg_A GTP-binding protein ENG 99.8 1.9E-19 6.5E-24 158.4 9.3 138 90-232 173-317 (436)
21 2cxx_A Probable GTP-binding pr 99.8 3E-18 1E-22 133.1 14.5 124 93-219 2-138 (190)
22 3lxw_A GTPase IMAP family memb 99.8 1.4E-18 4.7E-23 141.8 11.7 124 91-217 20-153 (247)
23 1h65_A Chloroplast outer envel 99.8 2.4E-18 8.1E-23 142.1 13.2 123 92-219 39-170 (270)
24 2gj8_A MNME, tRNA modification 99.8 1.5E-18 5.2E-23 133.7 11.2 118 92-216 4-128 (172)
25 1ega_A Protein (GTP-binding pr 99.8 2.8E-18 9.5E-23 143.9 13.2 130 93-229 9-143 (301)
26 4dcu_A GTP-binding protein ENG 99.8 1.8E-18 6.2E-23 152.9 11.9 138 90-231 193-336 (456)
27 2aka_B Dynamin-1; fusion prote 99.8 8.9E-18 3E-22 140.2 14.3 127 89-219 23-208 (299)
28 3a1s_A Iron(II) transport prot 99.8 2.6E-18 8.9E-23 141.0 10.0 117 92-217 5-124 (258)
29 2qpt_A EH domain-containing pr 99.8 2.1E-17 7.2E-22 149.0 16.4 135 90-229 63-244 (550)
30 2fh5_B SR-beta, signal recogni 99.7 1.6E-17 5.5E-22 131.9 13.7 126 91-233 6-145 (214)
31 2xtp_A GTPase IMAP family memb 99.7 1.1E-17 3.6E-22 137.3 12.4 125 90-218 20-154 (260)
32 1jwy_B Dynamin A GTPase domain 99.7 2.3E-17 8E-22 138.7 14.8 127 90-219 22-214 (315)
33 2ged_A SR-beta, signal recogni 99.7 5.4E-18 1.9E-22 132.3 9.9 133 90-235 46-188 (193)
34 1nrj_B SR-beta, signal recogni 99.7 2E-17 6.9E-22 131.7 12.8 125 90-228 10-145 (218)
35 1upt_A ARL1, ADP-ribosylation 99.7 5.5E-18 1.9E-22 129.3 9.2 113 91-218 6-123 (171)
36 3llu_A RAS-related GTP-binding 99.7 1.9E-17 6.5E-22 130.0 12.3 123 88-220 16-146 (196)
37 3def_A T7I23.11 protein; chlor 99.7 3E-17 1E-21 135.0 13.6 121 92-217 36-165 (262)
38 3b1v_A Ferrous iron uptake tra 99.7 3.4E-18 1.2E-22 141.3 7.9 117 92-217 3-121 (272)
39 4bas_A ADP-ribosylation factor 99.7 8.3E-18 2.9E-22 131.7 9.6 115 90-219 15-143 (199)
40 2j69_A Bacterial dynamin-like 99.7 2.6E-18 8.8E-23 158.9 7.7 117 91-218 68-245 (695)
41 1mky_A Probable GTP-binding pr 99.7 3.2E-17 1.1E-21 144.3 14.2 126 90-219 178-308 (439)
42 2lkc_A Translation initiation 99.7 6.7E-18 2.3E-22 129.8 8.7 114 90-218 6-122 (178)
43 3k53_A Ferrous iron transport 99.7 4.6E-18 1.6E-22 140.5 8.3 117 92-217 3-123 (271)
44 3j2k_7 ERF3, eukaryotic polype 99.7 5.9E-17 2E-21 142.5 15.6 115 90-217 15-169 (439)
45 1fzq_A ADP-ribosylation factor 99.7 1.5E-17 5.1E-22 129.0 10.5 113 91-218 15-132 (181)
46 3r7w_A Gtpase1, GTP-binding pr 99.7 3.1E-17 1.1E-21 137.9 13.0 122 92-222 3-134 (307)
47 1r8s_A ADP-ribosylation factor 99.7 2.8E-17 9.7E-22 124.6 11.3 111 93-218 1-116 (164)
48 2wji_A Ferrous iron transport 99.7 7.5E-18 2.6E-22 128.7 7.4 115 93-216 4-121 (165)
49 3q72_A GTP-binding protein RAD 99.7 2.9E-17 1E-21 124.8 10.6 113 92-218 2-121 (166)
50 1zj6_A ADP-ribosylation factor 99.7 3.3E-17 1.1E-21 127.4 11.0 113 91-218 15-132 (187)
51 2x2e_A Dynamin-1; nitration, h 99.7 4.7E-17 1.6E-21 139.4 12.7 125 91-218 30-212 (353)
52 2wjg_A FEOB, ferrous iron tran 99.7 1.9E-17 6.6E-22 128.5 8.6 117 92-217 7-126 (188)
53 2h17_A ADP-ribosylation factor 99.7 1.3E-17 4.6E-22 129.0 7.6 113 91-218 20-137 (181)
54 1zd9_A ADP-ribosylation factor 99.7 4.3E-17 1.5E-21 127.0 10.2 114 91-218 21-139 (188)
55 2h57_A ADP-ribosylation factor 99.7 2.3E-17 7.9E-22 128.6 8.6 114 91-218 20-141 (190)
56 2b6h_A ADP-ribosylation factor 99.7 4.6E-17 1.6E-21 127.5 9.9 114 90-218 27-145 (192)
57 1wb1_A Translation elongation 99.7 1.2E-16 4.1E-21 142.0 13.7 129 92-233 19-155 (482)
58 1ek0_A Protein (GTP-binding pr 99.7 1.7E-17 5.9E-22 126.2 7.2 113 93-218 4-123 (170)
59 1z0j_A RAB-22, RAS-related pro 99.7 3.6E-17 1.2E-21 124.5 9.0 114 92-218 6-126 (170)
60 1ksh_A ARF-like protein 2; sma 99.7 8.2E-17 2.8E-21 124.8 11.0 114 91-219 17-135 (186)
61 2nzj_A GTP-binding protein REM 99.7 9.2E-17 3.1E-21 122.9 11.0 115 92-218 4-126 (175)
62 2il1_A RAB12; G-protein, GDP, 99.7 7.3E-17 2.5E-21 126.2 10.6 114 91-217 25-145 (192)
63 1wms_A RAB-9, RAB9, RAS-relate 99.7 7.8E-17 2.7E-21 123.7 10.5 114 91-217 6-130 (177)
64 4dsu_A GTPase KRAS, isoform 2B 99.7 7.7E-17 2.6E-21 124.9 10.4 111 92-218 4-124 (189)
65 3cph_A RAS-related protein SEC 99.7 5E-17 1.7E-21 128.6 9.3 112 90-216 18-138 (213)
66 2bov_A RAla, RAS-related prote 99.7 1.3E-16 4.3E-21 125.6 11.5 112 90-217 12-133 (206)
67 1zbd_A Rabphilin-3A; G protein 99.7 1.5E-16 5.1E-21 125.1 11.9 114 91-217 7-127 (203)
68 1kao_A RAP2A; GTP-binding prot 99.7 1.2E-16 4.2E-21 120.9 11.0 112 93-217 4-122 (167)
69 2ce2_X GTPase HRAS; signaling 99.7 1.6E-16 5.4E-21 120.1 11.5 109 93-217 4-122 (166)
70 1g16_A RAS-related protein SEC 99.7 3.3E-17 1.1E-21 124.7 7.8 111 92-217 3-122 (170)
71 2p5s_A RAS and EF-hand domain 99.7 8.7E-17 3E-21 126.4 10.3 114 90-216 26-146 (199)
72 2gf9_A RAS-related protein RAB 99.7 4.9E-17 1.7E-21 126.6 8.6 115 90-217 20-141 (189)
73 3qq5_A Small GTP-binding prote 99.7 1.6E-17 5.6E-22 145.0 6.1 121 88-219 30-156 (423)
74 2efe_B Small GTP-binding prote 99.7 1.2E-16 4.2E-21 123.0 10.4 115 91-218 11-132 (181)
75 3sjy_A Translation initiation 99.7 2.2E-16 7.6E-21 137.5 13.2 129 90-232 6-158 (403)
76 1z0f_A RAB14, member RAS oncog 99.7 1.4E-16 4.8E-21 122.2 10.6 114 91-217 14-134 (179)
77 3bc1_A RAS-related protein RAB 99.7 3.3E-16 1.1E-20 121.6 12.5 114 91-217 10-141 (195)
78 2x77_A ADP-ribosylation factor 99.7 2.2E-17 7.6E-22 128.5 5.6 113 91-218 21-138 (189)
79 1u8z_A RAS-related protein RAL 99.7 1.9E-16 6.4E-21 120.0 10.6 110 92-217 4-123 (168)
80 3tkl_A RAS-related protein RAB 99.7 1.7E-16 5.6E-21 123.9 10.6 113 91-218 15-136 (196)
81 3t5g_A GTP-binding protein RHE 99.7 6.3E-17 2.2E-21 124.8 7.9 114 91-217 5-125 (181)
82 2gf0_A GTP-binding protein DI- 99.7 2.9E-16 9.9E-21 122.8 11.7 114 91-217 7-128 (199)
83 2fg5_A RAB-22B, RAS-related pr 99.7 1E-16 3.4E-21 125.3 9.0 114 91-217 22-142 (192)
84 1kk1_A EIF2gamma; initiation o 99.7 2.7E-16 9.3E-21 137.2 12.7 130 90-232 8-166 (410)
85 1zun_B Sulfate adenylate trans 99.7 5.2E-16 1.8E-20 136.3 14.5 129 91-232 23-188 (434)
86 1z2a_A RAS-related protein RAB 99.7 7.7E-17 2.6E-21 122.5 8.1 114 91-217 4-123 (168)
87 3clv_A RAB5 protein, putative; 99.7 2.4E-16 8.2E-21 123.3 11.1 112 91-215 6-159 (208)
88 1m2o_B GTP-binding protein SAR 99.7 1.6E-16 5.4E-21 124.2 10.0 111 92-217 23-138 (190)
89 1f6b_A SAR1; gtpases, N-termin 99.7 6.8E-17 2.3E-21 127.1 7.9 111 92-217 25-140 (198)
90 2erx_A GTP-binding protein DI- 99.7 1.9E-16 6.4E-21 120.6 10.1 114 92-218 3-124 (172)
91 2g6b_A RAS-related protein RAB 99.7 2.7E-16 9.2E-21 121.0 11.1 114 91-218 9-131 (180)
92 1z06_A RAS-related protein RAB 99.7 2.2E-16 7.4E-21 122.9 10.7 115 91-218 19-142 (189)
93 3con_A GTPase NRAS; structural 99.7 2.8E-16 9.5E-21 122.2 11.2 110 92-217 21-140 (190)
94 1moz_A ARL1, ADP-ribosylation 99.7 9.2E-17 3.1E-21 124.0 8.2 113 91-218 17-134 (183)
95 1d2e_A Elongation factor TU (E 99.7 6.5E-16 2.2E-20 134.3 14.5 127 93-232 4-149 (397)
96 3p26_A Elongation factor 1 alp 99.7 3.3E-16 1.1E-20 139.4 12.8 129 91-232 32-202 (483)
97 4djt_A GTP-binding nuclear pro 99.7 4.6E-17 1.6E-21 129.6 6.6 115 91-218 10-132 (218)
98 1c1y_A RAS-related protein RAP 99.7 1.7E-16 5.9E-21 120.4 9.3 109 93-217 4-122 (167)
99 2j1l_A RHO-related GTP-binding 99.7 2.7E-16 9.1E-21 125.2 10.8 118 91-221 33-156 (214)
100 3kkq_A RAS-related protein M-R 99.7 2.5E-16 8.6E-21 121.7 10.3 111 91-217 17-137 (183)
101 3t1o_A Gliding protein MGLA; G 99.7 4.2E-16 1.4E-20 121.5 11.7 114 91-218 13-150 (198)
102 2fn4_A P23, RAS-related protei 99.7 1.5E-16 5.2E-21 122.3 9.0 112 90-217 7-128 (181)
103 1x3s_A RAS-related protein RAB 99.7 1.1E-16 3.6E-21 124.8 8.1 113 92-217 15-135 (195)
104 1r2q_A RAS-related protein RAB 99.7 2.4E-16 8.3E-21 119.8 9.9 113 92-217 6-125 (170)
105 3izq_1 HBS1P, elongation facto 99.7 5.4E-16 1.8E-20 141.3 13.9 128 90-231 165-335 (611)
106 2a9k_A RAS-related protein RAL 99.7 3.5E-16 1.2E-20 120.8 10.8 111 91-217 17-137 (187)
107 2oil_A CATX-8, RAS-related pro 99.7 1.6E-16 5.6E-21 123.9 8.8 114 91-217 24-144 (193)
108 3tr5_A RF-3, peptide chain rel 99.7 2.9E-16 9.8E-21 140.8 11.5 128 92-233 13-163 (528)
109 2fv8_A H6, RHO-related GTP-bin 99.7 9.8E-17 3.4E-21 126.9 7.6 115 93-220 26-146 (207)
110 2atx_A Small GTP binding prote 99.7 1E-16 3.4E-21 125.2 7.4 113 91-219 17-138 (194)
111 2a5j_A RAS-related protein RAB 99.7 1.4E-16 4.7E-21 124.3 8.2 114 91-217 20-140 (191)
112 3q3j_B RHO-related GTP-binding 99.7 1.7E-16 5.8E-21 126.4 8.7 115 90-217 25-145 (214)
113 2c78_A Elongation factor TU-A; 99.7 1.7E-15 5.7E-20 132.0 15.7 129 91-232 10-158 (405)
114 1ky3_A GTP-binding protein YPT 99.7 1.1E-16 3.9E-21 123.1 7.4 114 91-217 7-132 (182)
115 1lnz_A SPO0B-associated GTP-bi 99.7 5E-17 1.7E-21 138.4 5.8 120 92-219 158-290 (342)
116 3reg_A RHO-like small GTPase; 99.7 6.1E-17 2.1E-21 126.6 5.7 111 91-217 22-141 (194)
117 2y8e_A RAB-protein 6, GH09086P 99.7 2.4E-16 8.1E-21 121.0 8.8 111 93-218 15-134 (179)
118 2iwr_A Centaurin gamma 1; ANK 99.7 2E-15 6.7E-20 116.1 14.1 107 91-216 6-121 (178)
119 1s0u_A EIF-2-gamma, translatio 99.7 6.4E-16 2.2E-20 134.8 12.5 128 91-231 7-163 (408)
120 3tw8_B RAS-related protein RAB 99.7 8E-17 2.7E-21 123.8 6.0 113 90-217 7-127 (181)
121 4gzl_A RAS-related C3 botulinu 99.7 8.7E-17 3E-21 127.0 6.4 114 91-220 29-151 (204)
122 1z08_A RAS-related protein RAB 99.7 2.5E-16 8.4E-21 120.0 8.7 113 92-217 6-125 (170)
123 2e87_A Hypothetical protein PH 99.7 4.3E-15 1.5E-19 127.3 17.4 125 90-222 165-299 (357)
124 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.4E-16 4.9E-21 123.0 7.4 115 92-219 5-125 (186)
125 2bme_A RAB4A, RAS-related prot 99.7 2.7E-16 9.2E-21 121.7 8.8 112 91-217 9-129 (186)
126 1wxq_A GTP-binding protein; st 99.7 3.7E-16 1.3E-20 135.5 10.5 87 93-187 1-114 (397)
127 2j0v_A RAC-like GTP-binding pr 99.7 1.9E-16 6.6E-21 125.4 8.0 117 91-220 8-130 (212)
128 4a9a_A Ribosome-interacting GT 99.7 1.3E-16 4.4E-21 137.0 7.2 119 88-215 68-194 (376)
129 2ew1_A RAS-related protein RAB 99.6 3.8E-16 1.3E-20 123.3 9.3 112 91-217 25-145 (201)
130 2hup_A RAS-related protein RAB 99.6 8.4E-16 2.9E-20 121.1 11.1 114 91-217 28-148 (201)
131 2elf_A Protein translation elo 99.6 5E-16 1.7E-20 133.6 10.6 114 94-232 23-141 (370)
132 2gco_A H9, RHO-related GTP-bin 99.6 2.3E-16 7.9E-21 124.2 7.9 116 92-220 25-146 (201)
133 3gj0_A GTP-binding nuclear pro 99.6 1.1E-16 3.7E-21 127.9 6.0 115 90-217 13-133 (221)
134 3zvr_A Dynamin-1; hydrolase, D 99.6 4.3E-15 1.5E-19 137.2 17.3 125 91-219 50-233 (772)
135 1vg8_A RAS-related protein RAB 99.6 1.7E-16 6E-21 124.9 7.0 112 91-217 7-131 (207)
136 3dz8_A RAS-related protein RAB 99.6 2.3E-16 7.9E-21 123.0 7.5 114 91-217 22-142 (191)
137 2hxs_A RAB-26, RAS-related pro 99.6 8.4E-16 2.9E-20 118.0 10.4 114 91-217 5-129 (178)
138 2atv_A RERG, RAS-like estrogen 99.6 2E-15 6.7E-20 118.2 12.6 113 91-217 27-146 (196)
139 2zej_A Dardarin, leucine-rich 99.6 1.3E-15 4.3E-20 118.3 11.3 115 93-221 3-130 (184)
140 2q3h_A RAS homolog gene family 99.6 4E-16 1.4E-20 122.5 8.4 113 90-218 18-139 (201)
141 3oes_A GTPase rhebl1; small GT 99.6 1.5E-16 5.1E-21 125.2 5.7 112 90-217 22-143 (201)
142 3t34_A Dynamin-related protein 99.6 1.4E-15 4.7E-20 130.5 12.2 123 91-218 33-218 (360)
143 2bcg_Y Protein YP2, GTP-bindin 99.6 3.3E-16 1.1E-20 123.5 7.8 113 91-218 7-128 (206)
144 1jny_A EF-1-alpha, elongation 99.6 1E-15 3.4E-20 134.6 11.6 130 91-233 5-178 (435)
145 2fu5_C RAS-related protein RAB 99.6 1.4E-16 4.9E-21 123.0 5.2 111 92-217 8-127 (183)
146 3ihw_A Centg3; RAS, centaurin, 99.6 4.8E-15 1.6E-19 115.2 13.8 108 90-216 18-132 (184)
147 2qag_A Septin-2, protein NEDD5 99.6 2.6E-15 9E-20 128.8 13.5 138 92-231 37-202 (361)
148 2yc2_C IFT27, small RAB-relate 99.6 3.2E-16 1.1E-20 123.3 6.9 112 92-217 20-146 (208)
149 3q85_A GTP-binding protein REM 99.6 1.1E-15 3.7E-20 116.4 9.7 112 92-217 2-123 (169)
150 2f7s_A C25KG, RAS-related prot 99.6 5E-16 1.7E-20 123.5 8.1 112 91-217 24-155 (217)
151 3bwd_D RAC-like GTP-binding pr 99.6 1.5E-16 5.2E-21 122.6 4.8 114 91-220 7-129 (182)
152 1f60_A Elongation factor EEF1A 99.6 3.2E-16 1.1E-20 138.5 7.4 128 92-232 7-176 (458)
153 2h5e_A Peptide chain release f 99.6 1.8E-15 6.2E-20 135.7 12.3 128 92-233 13-163 (529)
154 3cbq_A GTP-binding protein REM 99.6 6.5E-16 2.2E-20 121.3 8.3 114 90-217 21-144 (195)
155 3izy_P Translation initiation 99.6 3.7E-17 1.3E-21 146.3 0.9 112 91-217 3-118 (537)
156 2o52_A RAS-related protein RAB 99.6 8E-16 2.7E-20 121.0 8.3 114 91-217 24-144 (200)
157 3mca_A HBS1, elongation factor 99.6 4.5E-17 1.5E-21 148.0 1.2 129 90-232 175-346 (592)
158 4dkx_A RAS-related protein RAB 99.6 1.1E-15 3.6E-20 122.3 9.0 113 92-217 13-132 (216)
159 1zo1_I IF2, translation initia 99.6 1.6E-16 5.3E-21 141.2 4.3 112 91-217 3-117 (501)
160 3c5c_A RAS-like protein 12; GD 99.6 1.1E-15 3.9E-20 118.9 8.6 110 91-217 20-141 (187)
161 3cpj_B GTP-binding protein YPT 99.6 4.3E-16 1.5E-20 124.6 6.3 114 91-217 12-132 (223)
162 3cb4_D GTP-binding protein LEP 99.6 1.9E-15 6.5E-20 137.1 10.9 127 91-231 3-150 (599)
163 3o47_A ADP-ribosylation factor 99.6 7.8E-16 2.7E-20 130.5 7.9 113 92-220 165-283 (329)
164 2xex_A Elongation factor G; GT 99.6 1.7E-15 5.8E-20 140.0 10.7 130 90-233 8-156 (693)
165 1m7b_A RND3/RHOE small GTP-bin 99.6 9.8E-16 3.3E-20 118.8 7.7 114 91-217 6-125 (184)
166 1g7s_A Translation initiation 99.6 1.2E-15 4.1E-20 138.4 8.6 111 91-217 4-136 (594)
167 2rdo_7 EF-G, elongation factor 99.6 1.2E-14 4E-19 134.6 15.2 130 90-233 8-163 (704)
168 1gwn_A RHO-related GTP-binding 99.6 2.1E-15 7.3E-20 119.3 8.1 112 91-217 27-146 (205)
169 3h2y_A GTPase family protein; 99.6 1.1E-16 3.7E-21 137.8 0.6 137 93-233 161-303 (368)
170 3th5_A RAS-related C3 botulinu 99.4 9.2E-17 3.2E-21 126.6 0.0 113 90-218 28-149 (204)
171 1r5b_A Eukaryotic peptide chai 99.6 6.1E-15 2.1E-19 130.6 11.5 128 92-232 43-214 (467)
172 2ywe_A GTP-binding protein LEP 99.6 2E-15 6.7E-20 136.8 8.3 126 91-230 5-151 (600)
173 1dar_A EF-G, elongation factor 99.6 5.2E-15 1.8E-19 136.7 11.3 128 91-232 11-157 (691)
174 3vqt_A RF-3, peptide chain rel 99.6 5.9E-15 2E-19 132.9 11.1 127 93-233 32-181 (548)
175 3lvq_E ARF-GAP with SH3 domain 99.6 2.1E-15 7.2E-20 134.6 8.1 112 92-218 322-438 (497)
176 3l0i_B RAS-related protein RAB 99.6 1.5E-16 5E-21 125.1 0.1 114 91-217 32-152 (199)
177 3avx_A Elongation factor TS, e 99.6 2.2E-14 7.5E-19 136.6 14.8 129 91-232 295-442 (1289)
178 3r7w_B Gtpase2, GTP-binding pr 99.6 1.7E-14 5.9E-19 121.2 11.4 117 94-221 1-124 (331)
179 3ec1_A YQEH GTPase; atnos1, at 99.6 9.8E-17 3.4E-21 138.1 -2.6 137 93-233 163-304 (369)
180 1n0u_A EF-2, elongation factor 99.6 1.1E-14 3.8E-19 137.2 10.8 111 92-216 19-163 (842)
181 2qag_B Septin-6, protein NEDD5 99.5 1.1E-13 3.7E-18 120.3 14.9 141 91-233 41-206 (427)
182 2wkq_A NPH1-1, RAS-related C3 99.5 6.5E-15 2.2E-19 124.2 6.6 112 91-218 154-274 (332)
183 2qag_C Septin-7; cell cycle, c 99.5 6.7E-14 2.3E-18 121.9 12.4 141 92-233 31-197 (418)
184 2g3y_A GTP-binding protein GEM 99.5 1.4E-14 4.7E-19 115.4 7.4 114 91-217 36-159 (211)
185 3sop_A Neuronal-specific septi 99.5 7.9E-14 2.7E-18 115.0 11.8 141 93-234 3-171 (270)
186 2dy1_A Elongation factor G; tr 99.5 1E-13 3.5E-18 127.7 13.8 128 91-233 8-154 (665)
187 4fn5_A EF-G 1, elongation fact 99.5 3.6E-14 1.2E-18 131.6 10.0 130 90-233 11-166 (709)
188 3j25_A Tetracycline resistance 99.5 5.8E-15 2E-19 135.3 3.8 127 92-232 2-147 (638)
189 3dpu_A RAB family protein; roc 99.5 8.4E-14 2.9E-18 125.4 10.2 114 90-218 39-165 (535)
190 2www_A Methylmalonic aciduria 99.5 2.7E-14 9.3E-19 122.0 6.6 121 90-230 72-239 (349)
191 2cjw_A GTP-binding protein GEM 99.5 3.4E-14 1.2E-18 111.1 5.5 113 92-217 6-128 (192)
192 2f9l_A RAB11B, member RAS onco 99.5 2E-13 6.8E-18 107.1 9.5 113 92-217 5-124 (199)
193 1jal_A YCHF protein; nucleotid 99.4 4.8E-13 1.6E-17 114.2 8.5 86 93-186 3-108 (363)
194 2qnr_A Septin-2, protein NEDD5 99.4 3E-12 1E-16 107.1 13.1 139 91-231 17-183 (301)
195 3p32_A Probable GTPase RV1496/ 99.4 8E-13 2.7E-17 113.1 9.4 122 91-232 78-246 (355)
196 1oix_A RAS-related protein RAB 99.4 8.2E-13 2.8E-17 103.1 8.5 114 91-217 28-148 (191)
197 1udx_A The GTP-binding protein 99.4 1.9E-12 6.5E-17 112.7 9.8 117 92-218 157-284 (416)
198 2p67_A LAO/AO transport system 99.4 1.2E-12 4.2E-17 111.3 8.3 123 90-232 54-223 (341)
199 3c5h_A Glucocorticoid receptor 99.3 4.5E-12 1.5E-16 103.5 10.6 48 174-221 162-216 (255)
200 2dby_A GTP-binding protein; GD 99.3 1.3E-12 4.4E-17 112.1 6.4 85 93-186 2-111 (368)
201 1yrb_A ATP(GTP)binding protein 99.3 5.2E-12 1.8E-16 103.1 7.4 122 91-221 13-189 (262)
202 1puj_A YLQF, conserved hypothe 99.2 5.7E-12 2E-16 104.5 5.5 61 91-152 119-179 (282)
203 2j37_W Signal recognition part 99.2 2.6E-10 9E-15 101.3 12.9 117 91-218 100-255 (504)
204 2ohf_A Protein OLA1, GTP-bindi 99.2 1.4E-11 4.6E-16 106.3 4.3 88 91-186 21-128 (396)
205 2wsm_A Hydrogenase expression/ 99.1 1.5E-11 5E-16 97.8 3.5 107 91-217 29-168 (221)
206 2qm8_A GTPase/ATPase; G protei 99.1 1.4E-10 4.9E-15 98.4 7.8 24 91-114 54-77 (337)
207 3cnl_A YLQF, putative uncharac 99.1 3.7E-11 1.3E-15 98.5 3.3 59 93-152 100-158 (262)
208 1f5n_A Interferon-induced guan 99.0 4.8E-10 1.7E-14 101.3 7.8 99 91-198 37-144 (592)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.2E-10 4E-15 100.6 3.6 88 91-186 19-127 (392)
210 1tq4_A IIGP1, interferon-induc 98.9 4.6E-09 1.6E-13 91.2 11.0 114 93-216 70-188 (413)
211 3szr_A Interferon-induced GTP- 98.9 1.7E-08 5.7E-13 92.1 14.6 79 138-218 147-229 (608)
212 3dm5_A SRP54, signal recogniti 98.8 1.3E-07 4.5E-12 82.5 15.1 119 92-219 100-255 (443)
213 2v3c_C SRP54, signal recogniti 98.7 4.5E-08 1.5E-12 85.6 10.2 117 92-218 99-253 (432)
214 2hf9_A Probable hydrogenase ni 98.7 2.2E-08 7.5E-13 79.5 6.0 25 91-115 37-61 (226)
215 3kl4_A SRP54, signal recogniti 98.6 2.7E-07 9.1E-12 80.5 12.2 119 92-218 97-253 (433)
216 4fid_A G protein alpha subunit 98.5 1.8E-07 6.1E-12 79.1 6.4 69 136-217 159-242 (340)
217 3ohm_A Guanine nucleotide-bind 98.4 4.4E-07 1.5E-11 76.3 7.2 69 136-217 165-248 (327)
218 3q5d_A Atlastin-1; G protein, 98.3 1.4E-06 4.6E-11 76.3 7.9 25 91-115 66-90 (447)
219 1j8m_F SRP54, signal recogniti 98.3 7.5E-06 2.6E-10 68.0 11.3 119 92-218 98-254 (297)
220 2yhs_A FTSY, cell division pro 98.3 1.1E-05 3.8E-10 71.2 12.7 122 91-216 292-451 (503)
221 2xxa_A Signal recognition part 98.3 5.6E-06 1.9E-10 72.3 10.7 115 92-217 100-254 (433)
222 1t9h_A YLOQ, probable GTPase E 98.2 4E-07 1.4E-11 76.0 1.5 57 92-150 173-236 (307)
223 3e70_C DPA, signal recognition 98.1 8.4E-06 2.9E-10 68.7 8.2 116 92-216 129-281 (328)
224 1rj9_A FTSY, signal recognitio 98.1 6.6E-06 2.2E-10 68.6 6.7 24 92-115 102-125 (304)
225 1zu4_A FTSY; GTPase, signal re 98.0 0.00012 4.1E-09 61.4 14.1 24 91-114 104-127 (320)
226 2yv5_A YJEQ protein; hydrolase 98.0 6.5E-06 2.2E-10 68.5 5.9 55 93-149 166-227 (302)
227 1vma_A Cell division protein F 98.0 3.2E-05 1.1E-09 64.5 9.7 24 92-115 104-127 (306)
228 2rcn_A Probable GTPase ENGC; Y 98.0 2.9E-06 9.9E-11 72.2 3.0 58 93-150 216-280 (358)
229 1u0l_A Probable GTPase ENGC; p 97.9 6.6E-06 2.3E-10 68.5 3.6 57 93-150 170-233 (301)
230 2ffh_A Protein (FFH); SRP54, s 97.8 0.00017 6E-09 62.6 11.4 23 92-114 98-120 (425)
231 1puj_A YLQF, conserved hypothe 97.8 7.1E-05 2.4E-09 61.6 8.2 56 171-228 20-75 (282)
232 2px0_A Flagellar biosynthesis 97.7 6E-05 2E-09 62.5 6.8 23 92-114 105-127 (296)
233 3ney_A 55 kDa erythrocyte memb 97.7 2.3E-05 7.8E-10 61.1 3.1 27 90-116 17-43 (197)
234 1u0l_A Probable GTPase ENGC; p 97.6 3.6E-05 1.2E-09 64.0 4.2 69 138-221 63-133 (301)
235 3l82_B F-box only protein 4; T 97.6 0.00036 1.2E-08 54.8 9.4 121 90-217 14-177 (227)
236 4dzz_A Plasmid partitioning pr 97.6 0.0019 6.5E-08 49.7 13.8 64 137-216 75-143 (206)
237 1zcb_A G alpha I/13; GTP-bindi 97.5 2.9E-05 9.9E-10 66.3 2.0 68 136-216 199-281 (362)
238 1ls1_A Signal recognition part 97.5 0.00098 3.3E-08 55.1 11.2 24 92-115 98-121 (295)
239 1cip_A Protein (guanine nucleo 97.5 2E-05 7E-10 67.0 0.9 68 136-216 191-273 (353)
240 4ido_A Atlastin-1; GTPase, GTP 97.5 0.00044 1.5E-08 60.4 8.7 63 91-153 66-155 (457)
241 1azs_C GS-alpha; complex (lyas 97.4 5.9E-05 2E-09 65.1 2.8 68 136-216 215-297 (402)
242 1ye8_A Protein THEP1, hypothet 97.4 8.2E-05 2.8E-09 57.0 3.0 23 94-116 2-24 (178)
243 3cnl_A YLQF, putative uncharac 97.4 7.2E-05 2.5E-09 60.9 2.7 51 175-229 22-72 (262)
244 1lvg_A Guanylate kinase, GMP k 97.4 7.5E-05 2.6E-09 58.1 2.7 23 93-115 5-27 (198)
245 1kgd_A CASK, peripheral plasma 97.4 0.0001 3.5E-09 56.3 3.3 23 93-115 6-28 (180)
246 2xtz_A Guanine nucleotide-bind 97.3 8.5E-05 2.9E-09 63.1 2.6 67 137-216 182-263 (354)
247 2yv5_A YJEQ protein; hydrolase 97.3 0.0007 2.4E-08 56.2 7.6 46 174-219 79-126 (302)
248 1znw_A Guanylate kinase, GMP k 97.3 0.00016 5.4E-09 56.5 3.3 25 92-116 20-44 (207)
249 1ex7_A Guanylate kinase; subst 97.2 0.00011 3.6E-09 56.8 2.2 21 95-115 4-24 (186)
250 1s96_A Guanylate kinase, GMP k 97.2 0.00017 5.7E-09 57.1 3.3 26 91-116 15-40 (219)
251 3tr0_A Guanylate kinase, GMP k 97.2 0.00019 6.3E-09 55.6 3.5 24 92-115 7-30 (205)
252 1z6g_A Guanylate kinase; struc 97.2 0.00017 6E-09 56.9 3.0 24 92-115 23-46 (218)
253 3a00_A Guanylate kinase, GMP k 97.2 0.00016 5.6E-09 55.4 2.6 22 94-115 3-24 (186)
254 3c8u_A Fructokinase; YP_612366 97.2 0.00018 6.2E-09 56.2 3.0 25 91-115 21-45 (208)
255 3tif_A Uncharacterized ABC tra 97.2 0.00024 8.1E-09 56.9 3.5 25 92-116 31-55 (235)
256 2pcj_A ABC transporter, lipopr 97.1 0.0002 6.7E-09 56.9 2.9 24 93-116 31-54 (224)
257 1zp6_A Hypothetical protein AT 97.1 0.00024 8.2E-09 54.4 3.1 24 92-115 9-32 (191)
258 1htw_A HI0065; nucleotide-bind 97.1 0.00025 8.5E-09 53.2 2.9 23 93-115 34-56 (158)
259 3cwq_A Para family chromosome 97.1 0.00065 2.2E-08 53.1 5.4 66 137-217 67-134 (209)
260 3tau_A Guanylate kinase, GMP k 97.1 0.00034 1.2E-08 54.6 3.7 25 92-116 8-32 (208)
261 2onk_A Molybdate/tungstate ABC 97.1 0.00026 8.8E-09 56.9 3.0 23 93-115 25-47 (240)
262 3gfo_A Cobalt import ATP-bindi 97.1 0.00026 8.9E-09 58.0 2.9 24 93-116 35-58 (275)
263 1g6h_A High-affinity branched- 97.1 0.00027 9.3E-09 57.3 3.0 24 93-116 34-57 (257)
264 2cbz_A Multidrug resistance-as 97.1 0.00034 1.2E-08 56.0 3.5 24 93-116 32-55 (237)
265 1mv5_A LMRA, multidrug resista 97.1 0.00028 9.5E-09 56.7 2.9 24 93-116 29-52 (243)
266 2ff7_A Alpha-hemolysin translo 97.0 0.00028 9.7E-09 56.8 3.0 24 93-116 36-59 (247)
267 4g1u_C Hemin import ATP-bindin 97.0 0.00028 9.5E-09 57.6 2.9 24 93-116 38-61 (266)
268 1sgw_A Putative ABC transporte 97.0 0.00027 9.2E-09 55.7 2.7 23 94-116 37-59 (214)
269 4gp7_A Metallophosphoesterase; 97.0 0.00029 9.9E-09 53.3 2.8 23 93-115 10-32 (171)
270 2pze_A Cystic fibrosis transme 97.0 0.0003 1E-08 56.0 2.9 24 93-116 35-58 (229)
271 3b85_A Phosphate starvation-in 97.0 0.00027 9.4E-09 55.4 2.7 22 94-115 24-45 (208)
272 1ji0_A ABC transporter; ATP bi 97.0 0.00031 1.1E-08 56.3 3.0 24 93-116 33-56 (240)
273 1b0u_A Histidine permease; ABC 97.0 0.00037 1.3E-08 56.7 3.5 24 93-116 33-56 (262)
274 3asz_A Uridine kinase; cytidin 97.0 0.00033 1.1E-08 54.6 2.9 24 92-115 6-29 (211)
275 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00034 1.2E-08 56.4 3.0 23 93-115 30-52 (250)
276 2qi9_C Vitamin B12 import ATP- 97.0 0.00034 1.2E-08 56.5 2.9 24 93-116 27-50 (249)
277 2eyu_A Twitching motility prot 97.0 0.00034 1.2E-08 56.9 3.0 23 93-115 26-48 (261)
278 1t9h_A YLOQ, probable GTPase E 97.0 0.002 6.8E-08 53.6 7.6 48 173-220 85-134 (307)
279 2olj_A Amino acid ABC transpor 97.0 0.00043 1.5E-08 56.3 3.5 25 92-116 50-74 (263)
280 2j41_A Guanylate kinase; GMP, 97.0 0.00046 1.6E-08 53.4 3.5 24 92-115 6-29 (207)
281 2ihy_A ABC transporter, ATP-bi 97.0 0.00036 1.2E-08 57.3 2.9 24 93-116 48-71 (279)
282 1np6_A Molybdopterin-guanine d 97.0 0.00046 1.6E-08 52.6 3.3 24 92-115 6-29 (174)
283 2ghi_A Transport protein; mult 97.0 0.00047 1.6E-08 56.0 3.5 25 92-116 46-70 (260)
284 4b4t_L 26S protease subunit RP 97.0 0.012 4E-07 51.3 12.5 23 93-115 216-238 (437)
285 1vpl_A ABC transporter, ATP-bi 97.0 0.00047 1.6E-08 55.9 3.5 24 93-116 42-65 (256)
286 2ixe_A Antigen peptide transpo 96.9 0.00049 1.7E-08 56.2 3.5 25 92-116 45-69 (271)
287 2v9p_A Replication protein E1; 96.9 0.00047 1.6E-08 57.3 3.4 25 91-115 125-149 (305)
288 2nq2_C Hypothetical ABC transp 96.9 0.0004 1.4E-08 56.2 2.9 24 93-116 32-55 (253)
289 4eun_A Thermoresistant glucoki 96.9 0.0005 1.7E-08 53.2 3.3 24 92-115 29-52 (200)
290 2zu0_C Probable ATP-dependent 96.9 0.00052 1.8E-08 56.0 3.5 23 93-115 47-69 (267)
291 1kag_A SKI, shikimate kinase I 96.9 0.00046 1.6E-08 51.8 3.0 23 93-115 5-27 (173)
292 3l2o_B F-box only protein 4; s 96.9 0.0025 8.5E-08 52.4 7.3 121 90-217 99-262 (312)
293 2yz2_A Putative ABC transporte 96.9 0.00058 2E-08 55.6 3.5 24 93-116 34-57 (266)
294 3ec1_A YQEH GTPase; atnos1, at 96.9 0.00081 2.8E-08 57.4 4.4 53 161-218 61-113 (369)
295 2qor_A Guanylate kinase; phosp 96.9 0.00053 1.8E-08 53.2 3.0 25 91-115 11-35 (204)
296 2pjz_A Hypothetical protein ST 96.9 0.00052 1.8E-08 55.9 2.9 23 93-115 31-53 (263)
297 2i3b_A HCR-ntpase, human cance 96.9 0.00047 1.6E-08 53.3 2.5 22 94-115 3-24 (189)
298 2bdt_A BH3686; alpha-beta prot 96.9 0.00054 1.9E-08 52.4 2.9 22 94-115 4-25 (189)
299 2f1r_A Molybdopterin-guanine d 96.8 0.00029 1E-08 53.5 1.3 23 93-115 3-25 (171)
300 1knq_A Gluconate kinase; ALFA/ 96.8 0.00067 2.3E-08 51.1 3.3 24 92-115 8-31 (175)
301 3lnc_A Guanylate kinase, GMP k 96.8 0.0005 1.7E-08 54.4 2.7 24 92-115 27-51 (231)
302 3h2y_A GTPase family protein; 96.8 0.00088 3E-08 57.2 4.3 53 160-219 58-112 (368)
303 3nh6_A ATP-binding cassette SU 96.8 0.00049 1.7E-08 57.3 2.5 25 92-116 80-104 (306)
304 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00063 2.1E-08 57.8 3.0 24 93-116 31-54 (359)
305 3uie_A Adenylyl-sulfate kinase 96.8 0.00072 2.5E-08 52.3 3.1 24 92-115 25-48 (200)
306 2bbs_A Cystic fibrosis transme 96.8 0.00078 2.7E-08 55.6 3.4 25 92-116 64-88 (290)
307 3end_A Light-independent proto 96.8 0.0026 8.9E-08 52.5 6.6 23 91-113 40-62 (307)
308 3aez_A Pantothenate kinase; tr 96.8 0.00069 2.4E-08 56.5 3.1 25 91-115 89-113 (312)
309 2bbw_A Adenylate kinase 4, AK4 96.8 0.00082 2.8E-08 53.8 3.4 21 93-113 28-48 (246)
310 3jvv_A Twitching mobility prot 96.7 0.00069 2.4E-08 57.5 2.9 22 94-115 125-146 (356)
311 1z47_A CYSA, putative ABC-tran 96.7 0.00073 2.5E-08 57.4 3.0 24 93-116 42-65 (355)
312 3kb2_A SPBC2 prophage-derived 96.7 0.00084 2.9E-08 50.2 3.0 23 93-115 2-24 (173)
313 4b4t_J 26S protease regulatory 96.7 0.0078 2.7E-07 51.8 9.3 23 93-115 183-205 (405)
314 3lw7_A Adenylate kinase relate 96.7 0.00084 2.9E-08 50.1 3.0 20 93-112 2-21 (179)
315 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00068 2.3E-08 57.0 2.7 22 94-115 173-194 (330)
316 3b9q_A Chloroplast SRP recepto 96.7 0.0017 5.8E-08 53.9 5.1 24 92-115 100-123 (302)
317 1nij_A Hypothetical protein YJ 96.7 0.00059 2E-08 57.0 2.3 24 92-115 4-27 (318)
318 1gvn_B Zeta; postsegregational 96.7 0.0025 8.4E-08 52.4 6.0 24 92-115 33-56 (287)
319 4a74_A DNA repair and recombin 96.7 0.0008 2.7E-08 52.8 2.9 23 93-115 26-48 (231)
320 3rlf_A Maltose/maltodextrin im 96.7 0.0008 2.7E-08 57.6 3.0 24 93-116 30-53 (381)
321 2gza_A Type IV secretion syste 96.7 0.00068 2.3E-08 57.7 2.6 24 93-116 176-199 (361)
322 1cke_A CK, MSSA, protein (cyti 96.7 0.00093 3.2E-08 52.5 3.1 23 93-115 6-28 (227)
323 1g29_1 MALK, maltose transport 96.7 0.00086 2.9E-08 57.3 3.0 24 93-116 30-53 (372)
324 3tui_C Methionine import ATP-b 96.7 0.001 3.6E-08 56.5 3.5 25 92-116 54-78 (366)
325 3ec2_A DNA replication protein 96.7 0.00092 3.2E-08 50.7 2.9 24 92-115 38-61 (180)
326 2jeo_A Uridine-cytidine kinase 96.7 0.00094 3.2E-08 53.4 3.1 24 92-115 25-48 (245)
327 1v43_A Sugar-binding transport 96.7 0.00088 3E-08 57.2 3.0 24 93-116 38-61 (372)
328 2yyz_A Sugar ABC transporter, 96.6 0.0011 3.8E-08 56.3 3.5 24 93-116 30-53 (359)
329 3vaa_A Shikimate kinase, SK; s 96.6 0.0011 3.8E-08 51.2 3.3 24 92-115 25-48 (199)
330 2it1_A 362AA long hypothetical 96.6 0.0011 3.9E-08 56.3 3.5 24 93-116 30-53 (362)
331 2if2_A Dephospho-COA kinase; a 96.6 0.0011 3.7E-08 51.3 3.1 22 93-114 2-23 (204)
332 2kjq_A DNAA-related protein; s 96.6 0.0011 3.7E-08 49.1 2.9 24 92-115 36-59 (149)
333 1bif_A 6-phosphofructo-2-kinas 96.6 0.00051 1.7E-08 60.5 1.2 24 92-115 39-62 (469)
334 3t61_A Gluconokinase; PSI-biol 96.6 0.0012 4.2E-08 51.0 3.3 24 92-115 18-41 (202)
335 4b4t_K 26S protease regulatory 96.6 0.012 4.1E-07 51.1 9.8 23 93-115 207-229 (428)
336 1lw7_A Transcriptional regulat 96.6 0.00088 3E-08 57.0 2.6 25 92-116 170-194 (365)
337 2ehv_A Hypothetical protein PH 96.6 0.0011 3.7E-08 52.7 3.0 22 93-114 31-52 (251)
338 1d2n_A N-ethylmaleimide-sensit 96.6 0.028 9.7E-07 45.3 11.5 24 92-115 64-87 (272)
339 3d31_A Sulfate/molybdate ABC t 96.6 0.00075 2.6E-08 57.1 2.0 24 93-116 27-50 (348)
340 2ewv_A Twitching motility prot 96.6 0.001 3.5E-08 56.9 2.9 23 93-115 137-159 (372)
341 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.046 1.6E-06 43.4 12.6 24 92-115 39-62 (262)
342 1sxj_A Activator 1 95 kDa subu 96.6 0.013 4.3E-07 52.2 10.0 24 92-115 77-100 (516)
343 3t15_A Ribulose bisphosphate c 96.6 0.0064 2.2E-07 50.0 7.5 23 93-115 37-59 (293)
344 3gd7_A Fusion complex of cysti 96.5 0.0011 3.8E-08 56.9 3.0 25 92-116 47-71 (390)
345 1y63_A LMAJ004144AAA protein; 96.5 0.0017 5.7E-08 49.5 3.7 25 91-115 9-33 (184)
346 2og2_A Putative signal recogni 96.5 0.0024 8.2E-08 54.3 5.0 24 92-115 157-180 (359)
347 1xjc_A MOBB protein homolog; s 96.5 0.0015 5.1E-08 49.5 3.2 24 92-115 4-27 (169)
348 1rz3_A Hypothetical protein rb 96.5 0.0016 5.5E-08 50.4 3.4 25 91-115 21-45 (201)
349 2qt1_A Nicotinamide riboside k 96.5 0.0015 5E-08 50.7 3.2 24 92-115 21-44 (207)
350 2oap_1 GSPE-2, type II secreti 96.5 0.0011 3.8E-08 59.0 2.8 22 94-115 262-283 (511)
351 1p9r_A General secretion pathw 96.5 0.0012 4.2E-08 57.2 2.9 22 94-115 169-190 (418)
352 4e22_A Cytidylate kinase; P-lo 96.5 0.0017 5.7E-08 52.3 3.5 22 92-113 27-48 (252)
353 1sq5_A Pantothenate kinase; P- 96.5 0.0015 5E-08 54.3 3.2 25 91-115 79-103 (308)
354 1jjv_A Dephospho-COA kinase; P 96.5 0.0014 4.6E-08 50.8 2.8 23 93-115 3-25 (206)
355 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0013 4.5E-08 57.7 3.0 25 91-115 137-161 (460)
356 1qhx_A CPT, protein (chloramph 96.5 0.0018 6E-08 48.8 3.3 23 93-115 4-26 (178)
357 4b4t_H 26S protease regulatory 96.5 0.014 4.9E-07 51.0 9.3 23 93-115 244-266 (467)
358 1ly1_A Polynucleotide kinase; 96.4 0.0016 5.6E-08 48.9 3.0 21 94-114 4-24 (181)
359 2jaq_A Deoxyguanosine kinase; 96.4 0.0016 5.6E-08 50.0 3.0 22 94-115 2-23 (205)
360 2x8a_A Nuclear valosin-contain 96.4 0.0026 8.7E-08 52.0 4.3 21 95-115 47-67 (274)
361 1oxx_K GLCV, glucose, ABC tran 96.4 0.001 3.5E-08 56.5 1.9 24 93-116 32-55 (353)
362 4b4t_I 26S protease regulatory 96.4 0.03 1E-06 48.5 10.9 23 93-115 217-239 (437)
363 3tqc_A Pantothenate kinase; bi 96.4 0.0019 6.5E-08 54.0 3.4 25 91-115 91-115 (321)
364 3trf_A Shikimate kinase, SK; a 96.4 0.002 6.8E-08 48.9 3.3 24 92-115 5-28 (185)
365 2vp4_A Deoxynucleoside kinase; 96.4 0.0018 6.1E-08 51.3 3.1 25 91-115 19-43 (230)
366 1nks_A Adenylate kinase; therm 96.4 0.0017 5.8E-08 49.3 2.8 23 93-115 2-24 (194)
367 2yvu_A Probable adenylyl-sulfa 96.4 0.0023 7.9E-08 48.7 3.5 25 91-115 12-36 (186)
368 3zvl_A Bifunctional polynucleo 96.3 0.018 6E-07 49.9 9.4 24 92-115 258-281 (416)
369 1kht_A Adenylate kinase; phosp 96.3 0.0022 7.5E-08 48.7 3.2 23 93-115 4-26 (192)
370 4b4t_M 26S protease regulatory 96.3 0.0057 1.9E-07 53.2 6.2 23 93-115 216-238 (434)
371 2rhm_A Putative kinase; P-loop 96.3 0.0021 7.2E-08 48.9 3.1 23 93-115 6-28 (193)
372 1odf_A YGR205W, hypothetical 3 96.3 0.0022 7.4E-08 52.9 3.3 25 91-115 30-54 (290)
373 3kta_A Chromosome segregation 96.3 0.0019 6.6E-08 48.8 2.8 21 94-114 28-48 (182)
374 1ixz_A ATP-dependent metallopr 96.3 0.002 6.7E-08 51.7 2.7 22 94-115 51-72 (254)
375 3te6_A Regulatory protein SIR3 96.3 0.033 1.1E-06 46.4 10.2 25 91-115 44-68 (318)
376 3iij_A Coilin-interacting nucl 96.3 0.0025 8.4E-08 48.2 3.1 24 92-115 11-34 (180)
377 2v1u_A Cell division control p 96.2 0.031 1.1E-06 47.0 10.0 24 92-115 44-67 (387)
378 2p5t_B PEZT; postsegregational 96.2 0.0038 1.3E-07 50.2 4.1 25 91-115 31-55 (253)
379 1nn5_A Similar to deoxythymidy 96.2 0.0031 1.1E-07 48.8 3.5 24 92-115 9-32 (215)
380 2v54_A DTMP kinase, thymidylat 96.2 0.0033 1.1E-07 48.4 3.6 24 92-115 4-27 (204)
381 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0023 7.9E-08 57.3 3.0 25 92-116 47-71 (538)
382 3cm0_A Adenylate kinase; ATP-b 96.2 0.0027 9.3E-08 48.1 3.0 22 93-114 5-26 (186)
383 2c95_A Adenylate kinase 1; tra 96.2 0.0032 1.1E-07 48.0 3.4 24 92-115 9-32 (196)
384 3dl0_A Adenylate kinase; phosp 96.2 0.0028 9.5E-08 49.4 3.0 22 94-115 2-23 (216)
385 1ukz_A Uridylate kinase; trans 96.2 0.0038 1.3E-07 48.1 3.8 25 91-115 14-38 (203)
386 1zak_A Adenylate kinase; ATP:A 96.2 0.0029 1E-07 49.6 3.1 24 92-115 5-28 (222)
387 3exa_A TRNA delta(2)-isopenten 96.1 0.0045 1.5E-07 51.5 4.3 74 93-166 4-86 (322)
388 3fb4_A Adenylate kinase; psych 96.1 0.0029 1E-07 49.2 3.1 22 94-115 2-23 (216)
389 3euj_A Chromosome partition pr 96.1 0.0025 8.7E-08 56.2 2.9 23 93-115 30-52 (483)
390 1via_A Shikimate kinase; struc 96.1 0.0027 9.1E-08 47.8 2.7 23 93-115 5-27 (175)
391 1uf9_A TT1252 protein; P-loop, 96.1 0.0032 1.1E-07 48.3 3.1 24 92-115 8-31 (203)
392 2cdn_A Adenylate kinase; phosp 96.1 0.0043 1.5E-07 47.8 3.8 24 92-115 20-43 (201)
393 1aky_A Adenylate kinase; ATP:A 96.1 0.0036 1.2E-07 49.0 3.4 24 92-115 4-27 (220)
394 2wwf_A Thymidilate kinase, put 96.1 0.0038 1.3E-07 48.2 3.5 24 92-115 10-33 (212)
395 1zd8_A GTP:AMP phosphotransfer 96.1 0.0034 1.2E-07 49.4 3.2 24 92-115 7-30 (227)
396 2plr_A DTMP kinase, probable t 96.1 0.0032 1.1E-07 48.6 3.0 23 93-115 5-27 (213)
397 3ozx_A RNAse L inhibitor; ATP 96.1 0.0028 9.6E-08 56.8 2.9 24 93-116 26-49 (538)
398 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0031 1.1E-07 49.3 2.9 23 93-115 24-46 (235)
399 2pez_A Bifunctional 3'-phospho 96.1 0.0033 1.1E-07 47.5 2.9 24 92-115 5-28 (179)
400 3b60_A Lipid A export ATP-bind 96.1 0.0033 1.1E-07 56.9 3.4 25 92-116 369-393 (582)
401 1lv7_A FTSH; alpha/beta domain 96.1 0.0073 2.5E-07 48.3 5.1 23 93-115 46-68 (257)
402 3foz_A TRNA delta(2)-isopenten 96.0 0.0037 1.2E-07 51.9 3.3 24 93-116 11-34 (316)
403 3pvs_A Replication-associated 96.0 0.038 1.3E-06 48.2 9.9 23 93-115 51-73 (447)
404 3a8t_A Adenylate isopentenyltr 96.0 0.006 2E-07 51.3 4.6 24 93-116 41-64 (339)
405 1iy2_A ATP-dependent metallopr 96.0 0.0029 1E-07 51.4 2.7 22 94-115 75-96 (278)
406 1in4_A RUVB, holliday junction 96.0 0.0029 1E-07 53.0 2.7 23 93-115 52-74 (334)
407 2yl4_A ATP-binding cassette SU 96.0 0.0032 1.1E-07 57.1 3.1 25 92-116 370-394 (595)
408 1gtv_A TMK, thymidylate kinase 96.0 0.0016 5.6E-08 50.5 1.1 22 94-115 2-23 (214)
409 3b5x_A Lipid A export ATP-bind 96.0 0.0036 1.2E-07 56.6 3.4 25 92-116 369-393 (582)
410 3nwj_A ATSK2; P loop, shikimat 96.0 0.0035 1.2E-07 50.5 2.9 23 93-115 49-71 (250)
411 3j16_B RLI1P; ribosome recycli 96.0 0.0032 1.1E-07 57.2 3.0 25 92-116 103-127 (608)
412 3eph_A TRNA isopentenyltransfe 96.0 0.0049 1.7E-07 53.0 4.0 65 93-157 3-76 (409)
413 1jbk_A CLPB protein; beta barr 96.0 0.0043 1.5E-07 46.5 3.3 23 93-115 44-66 (195)
414 3crm_A TRNA delta(2)-isopenten 96.0 0.0026 9E-08 53.2 2.2 24 93-116 6-29 (323)
415 2iyv_A Shikimate kinase, SK; t 96.0 0.0036 1.2E-07 47.4 2.8 23 93-115 3-25 (184)
416 3qf4_B Uncharacterized ABC tra 96.0 0.0036 1.2E-07 56.8 3.2 25 92-116 381-405 (598)
417 2obl_A ESCN; ATPase, hydrolase 96.0 0.0034 1.2E-07 53.1 2.8 25 92-116 71-95 (347)
418 1cr0_A DNA primase/helicase; R 96.0 0.0032 1.1E-07 51.6 2.6 23 93-115 36-58 (296)
419 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0038 1.3E-07 50.4 3.0 24 92-115 4-27 (260)
420 1tev_A UMP-CMP kinase; ploop, 95.9 0.004 1.4E-07 47.3 2.9 23 93-115 4-26 (196)
421 3bk7_A ABC transporter ATP-bin 95.9 0.0035 1.2E-07 56.9 2.9 26 91-116 116-141 (607)
422 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.004 1.4E-07 45.9 2.8 20 94-113 25-44 (149)
423 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.15 5.2E-06 42.2 12.8 23 93-115 46-68 (322)
424 4a82_A Cystic fibrosis transme 95.9 0.0032 1.1E-07 56.9 2.6 25 92-116 367-391 (578)
425 3umf_A Adenylate kinase; rossm 95.9 0.0051 1.7E-07 48.5 3.5 24 93-116 30-53 (217)
426 2bwj_A Adenylate kinase 5; pho 95.9 0.0045 1.5E-07 47.3 3.1 23 93-115 13-35 (199)
427 3sr0_A Adenylate kinase; phosp 95.9 0.0037 1.3E-07 48.8 2.7 24 94-117 2-25 (206)
428 2ze6_A Isopentenyl transferase 95.9 0.004 1.4E-07 50.1 2.9 22 94-115 3-24 (253)
429 1qf9_A UMP/CMP kinase, protein 95.9 0.0055 1.9E-07 46.4 3.6 23 93-115 7-29 (194)
430 3qf7_A RAD50; ABC-ATPase, ATPa 95.9 0.0037 1.3E-07 53.2 2.8 20 94-113 25-44 (365)
431 2pt5_A Shikimate kinase, SK; a 95.9 0.0047 1.6E-07 45.9 3.0 22 94-115 2-23 (168)
432 1e4v_A Adenylate kinase; trans 95.9 0.0046 1.6E-07 48.2 3.1 22 94-115 2-23 (214)
433 1vht_A Dephospho-COA kinase; s 95.9 0.0047 1.6E-07 48.2 3.1 22 93-114 5-26 (218)
434 1e6c_A Shikimate kinase; phosp 95.9 0.0045 1.5E-07 46.2 2.9 23 93-115 3-25 (173)
435 4a1f_A DNAB helicase, replicat 95.9 0.06 2.1E-06 45.2 10.0 21 94-114 48-68 (338)
436 3ozx_A RNAse L inhibitor; ATP 95.9 0.0039 1.3E-07 55.8 2.9 24 93-116 295-318 (538)
437 2pbr_A DTMP kinase, thymidylat 95.8 0.005 1.7E-07 46.8 3.0 21 94-114 2-22 (195)
438 2dpy_A FLII, flagellum-specifi 95.8 0.0042 1.4E-07 54.2 2.8 25 92-116 157-181 (438)
439 3qf4_A ABC transporter, ATP-bi 95.8 0.0042 1.4E-07 56.3 2.9 25 92-116 369-393 (587)
440 2vli_A Antibiotic resistance p 95.8 0.0043 1.5E-07 46.8 2.5 23 93-115 6-28 (183)
441 2z0h_A DTMP kinase, thymidylat 95.8 0.0048 1.6E-07 47.1 2.8 22 94-115 2-23 (197)
442 2cvh_A DNA repair and recombin 95.8 0.0061 2.1E-07 47.3 3.5 23 92-114 20-42 (220)
443 1svm_A Large T antigen; AAA+ f 95.8 0.0056 1.9E-07 52.3 3.4 24 92-115 169-192 (377)
444 3tlx_A Adenylate kinase 2; str 95.8 0.0056 1.9E-07 48.9 3.2 24 92-115 29-52 (243)
445 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0046 1.6E-07 55.4 3.0 24 93-116 313-336 (538)
446 3u61_B DNA polymerase accessor 95.7 0.33 1.1E-05 39.9 14.2 22 94-115 50-71 (324)
447 1m7g_A Adenylylsulfate kinase; 95.7 0.0054 1.9E-07 47.7 3.0 24 92-115 25-48 (211)
448 3bos_A Putative DNA replicatio 95.7 0.0067 2.3E-07 47.5 3.5 24 92-115 52-75 (242)
449 3be4_A Adenylate kinase; malar 95.7 0.0049 1.7E-07 48.2 2.6 24 92-115 5-28 (217)
450 3bk7_A ABC transporter ATP-bin 95.7 0.0051 1.7E-07 55.9 3.0 24 93-116 383-406 (607)
451 1n0w_A DNA repair protein RAD5 95.7 0.0057 1.9E-07 48.2 2.9 23 93-115 25-47 (243)
452 1ak2_A Adenylate kinase isoenz 95.7 0.0075 2.6E-07 47.7 3.5 24 92-115 16-39 (233)
453 2xb4_A Adenylate kinase; ATP-b 95.6 0.0067 2.3E-07 47.7 3.1 22 94-115 2-23 (223)
454 1uj2_A Uridine-cytidine kinase 95.6 0.0065 2.2E-07 48.7 3.0 25 91-115 21-45 (252)
455 1qhl_A Protein (cell division 95.6 0.00099 3.4E-08 53.0 -1.8 21 95-115 30-50 (227)
456 2qp9_X Vacuolar protein sortin 95.6 0.014 4.8E-07 49.3 5.3 23 93-115 85-107 (355)
457 2p65_A Hypothetical protein PF 95.6 0.0054 1.8E-07 46.0 2.4 24 92-115 43-66 (187)
458 3r20_A Cytidylate kinase; stru 95.6 0.0072 2.5E-07 48.1 3.2 24 92-115 9-32 (233)
459 1sxj_E Activator 1 40 kDa subu 95.6 0.0065 2.2E-07 50.9 3.1 24 92-115 36-59 (354)
460 4eaq_A DTMP kinase, thymidylat 95.6 0.007 2.4E-07 47.9 3.1 25 91-115 25-49 (229)
461 1qvr_A CLPB protein; coiled co 95.6 0.036 1.2E-06 52.4 8.4 23 93-115 192-214 (854)
462 3vfd_A Spastin; ATPase, microt 95.5 0.047 1.6E-06 46.5 8.4 24 92-115 148-171 (389)
463 3j16_B RLI1P; ribosome recycli 95.5 0.0063 2.2E-07 55.3 3.0 23 94-116 380-402 (608)
464 2w58_A DNAI, primosome compone 95.5 0.0074 2.5E-07 46.3 3.0 23 93-115 55-77 (202)
465 2b8t_A Thymidine kinase; deoxy 95.5 0.0092 3.2E-07 47.2 3.6 40 177-216 90-129 (223)
466 2rcn_A Probable GTPase ENGC; Y 95.5 0.035 1.2E-06 47.0 7.3 46 174-220 130-177 (358)
467 1zuh_A Shikimate kinase; alpha 95.5 0.0083 2.8E-07 44.7 3.0 25 91-115 6-30 (168)
468 4f4c_A Multidrug resistance pr 95.4 0.0066 2.3E-07 60.0 2.9 25 92-116 1105-1129(1321)
469 1q3t_A Cytidylate kinase; nucl 95.4 0.01 3.4E-07 47.0 3.5 24 91-114 15-38 (236)
470 3h4m_A Proteasome-activating n 95.4 0.0097 3.3E-07 48.3 3.5 24 92-115 51-74 (285)
471 3ake_A Cytidylate kinase; CMP 95.4 0.009 3.1E-07 45.9 3.1 23 93-115 3-25 (208)
472 2f6r_A COA synthase, bifunctio 95.4 0.0092 3.1E-07 48.8 3.2 23 92-114 75-97 (281)
473 3cf2_A TER ATPase, transitiona 95.3 0.067 2.3E-06 50.1 9.1 24 92-115 238-261 (806)
474 1r6b_X CLPA protein; AAA+, N-t 95.3 0.055 1.9E-06 50.3 8.7 24 92-115 207-230 (758)
475 1tue_A Replication protein E1; 95.3 0.0076 2.6E-07 47.0 2.4 22 94-115 60-81 (212)
476 1sxj_C Activator 1 40 kDa subu 95.3 0.0097 3.3E-07 49.8 3.2 23 93-115 47-69 (340)
477 1nlf_A Regulatory protein REPA 95.3 0.0089 3E-07 48.6 2.9 23 93-115 31-53 (279)
478 2chg_A Replication factor C sm 95.3 0.011 3.8E-07 45.4 3.2 22 94-115 40-61 (226)
479 2qmh_A HPR kinase/phosphorylas 95.2 0.011 3.8E-07 45.9 3.1 24 92-115 34-57 (205)
480 1fnn_A CDC6P, cell division co 95.2 0.0097 3.3E-07 50.3 3.0 23 93-115 45-67 (389)
481 3qks_A DNA double-strand break 95.2 0.0098 3.4E-07 46.2 2.8 20 94-113 25-44 (203)
482 4fcw_A Chaperone protein CLPB; 95.2 0.021 7.3E-07 46.7 4.9 22 94-115 49-70 (311)
483 3b9p_A CG5977-PA, isoform A; A 95.2 0.012 4.2E-07 48.0 3.4 24 92-115 54-77 (297)
484 2iw3_A Elongation factor 3A; a 95.2 0.0062 2.1E-07 58.1 1.7 23 93-115 700-722 (986)
485 3syl_A Protein CBBX; photosynt 95.2 0.014 4.7E-07 47.9 3.6 25 91-115 66-90 (309)
486 2grj_A Dephospho-COA kinase; T 95.1 0.012 4.2E-07 45.3 3.0 25 91-115 11-35 (192)
487 4aby_A DNA repair protein RECN 95.1 0.0043 1.5E-07 53.4 0.3 21 94-114 62-82 (415)
488 3cr8_A Sulfate adenylyltranfer 95.1 0.0075 2.6E-07 54.1 1.9 24 92-115 369-392 (552)
489 3n70_A Transport activator; si 95.0 0.016 5.3E-07 42.3 3.2 23 93-115 25-47 (145)
490 3cf0_A Transitional endoplasmi 95.0 0.015 5.1E-07 47.9 3.5 23 93-115 50-72 (301)
491 1a7j_A Phosphoribulokinase; tr 95.0 0.0099 3.4E-07 48.9 2.4 24 92-115 5-28 (290)
492 3ux8_A Excinuclease ABC, A sub 95.0 0.0085 2.9E-07 55.1 2.1 21 93-113 349-369 (670)
493 4f4c_A Multidrug resistance pr 95.0 0.012 4.2E-07 58.1 3.3 25 92-116 444-468 (1321)
494 1ltq_A Polynucleotide kinase; 95.0 0.013 4.4E-07 48.0 3.0 22 94-115 4-25 (301)
495 3tqf_A HPR(Ser) kinase; transf 95.0 0.015 5.3E-07 44.0 3.1 24 92-115 16-39 (181)
496 1njg_A DNA polymerase III subu 95.0 0.012 4.2E-07 45.6 2.7 23 93-115 46-68 (250)
497 2iw3_A Elongation factor 3A; a 95.0 0.012 4E-07 56.2 2.9 23 93-115 462-484 (986)
498 2ga8_A Hypothetical 39.9 kDa p 94.9 0.017 5.8E-07 48.8 3.5 25 91-115 23-47 (359)
499 2qby_A CDC6 homolog 1, cell di 94.9 0.014 4.9E-07 49.0 3.1 24 92-115 45-68 (386)
500 1l8q_A Chromosomal replication 94.9 0.015 5.3E-07 48.1 3.2 24 92-115 37-60 (324)
No 1
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=1.2e-24 Score=174.22 Aligned_cols=150 Identities=34% Similarity=0.534 Sum_probs=123.0
Q ss_pred CCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC----CeEEEEeCCCCCCcccchHHHHH
Q 026538 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDA 160 (237)
Q Consensus 85 ~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~ 160 (237)
...+....++|+++|.+|+|||||+|+|++......++..+++|.+....... ..+.||||||+.++.......+.
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 34555677899999999999999999999984356788888999887665543 78999999998775444445667
Q ss_pred HHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 026538 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFY 234 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~ 234 (237)
|..+...|+.....+|++++|+|+.+++...+..++..+...++|+++|+||+|+.+..+.....+.+.+.+..
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 77888888888777999999999998888888888898888899999999999999887776666666665554
No 2
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=4.6e-24 Score=167.21 Aligned_cols=149 Identities=36% Similarity=0.620 Sum_probs=109.4
Q ss_pred cCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538 84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (237)
Q Consensus 84 ~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (237)
..+.+....++|+++|.+|+|||||+|+|++........+.+++|.+...+..+..+.+|||||+.+........+.+..
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHH
Confidence 34455567789999999999999999999988434566778888888877776778999999998775444444556667
Q ss_pred HHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
+...|+.....+|++++|+|+..+.+..+..+++++...+.|+++|+||+|+.+..+.....+.+.+.+
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~ 163 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL 163 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHH
Confidence 777777776667999999999888888877778888888899999999999998776666566666544
No 3
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.91 E-value=1e-23 Score=164.82 Aligned_cols=152 Identities=37% Similarity=0.604 Sum_probs=122.4
Q ss_pred hhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHH
Q 026538 81 AKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDA 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~ 160 (237)
.......+....++|+++|.+|||||||+|+|++. ......+.+++|........+..+.+|||||+............
T Consensus 12 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 90 (195)
T 3pqc_A 12 ARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERML 90 (195)
T ss_dssp ECSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHH
T ss_pred hcChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHH
Confidence 33444556667889999999999999999999998 45667788888888887777888999999998765444444556
Q ss_pred HHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
+..+...|+.....++++++|+|+..........+..++...+.|+++|+||+|+.++.+.....+.+++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 163 (195)
T 3pqc_A 91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS 163 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHh
Confidence 7777888888777789999999998887787788888888889999999999999877766666666665544
No 4
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.88 E-value=3.7e-23 Score=183.28 Aligned_cols=176 Identities=22% Similarity=0.189 Sum_probs=96.1
Q ss_pred CcceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHh
Q 026538 34 RRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALT 113 (237)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~ 113 (237)
.+++... +.+++.+|||+|+++.............+................. ...++|+++|.+|||||||+|+|+
T Consensus 178 ~~L~~~~-a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~--r~~~kV~ivG~~nvGKSSLln~L~ 254 (476)
T 3gee_A 178 EQLIRSC-ALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV--SEGVSTVIAGKPNAGKSTLLNTLL 254 (476)
T ss_dssp THHHHHH-HTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCEEEEEECCTTSSHHHHHHHCC
T ss_pred HHHHHHH-HHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh--cCCCEEEEECCCCCCHHHHHHHHh
Confidence 4444444 4899999999998887665554443333433333333222211111 134689999999999999999999
Q ss_pred cccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHH-HHHHHhccccccEEEEEEeCCCCCC
Q 026538 114 RQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVK 189 (237)
Q Consensus 114 ~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~v~~vvd~~~~~~ 189 (237)
+. ....+++.+|+|++.. +...+..+.+|||||+.+.. + .+..+ +.........+|++++|+|++.+.+
T Consensus 255 ~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~--~----~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s 327 (476)
T 3gee_A 255 GQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG--E----EIEHEGIRRSRMKMAEADLILYLLDLGTERL 327 (476)
T ss_dssp -------------------CEEEEETTEEEEEEC--------------------------CCCSSCSEEEEEEETTTCSS
T ss_pred CC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch--h----HHHHHHHHHHHhhcccCCEEEEEEECCCCcc
Confidence 98 4467889999998863 33347789999999986521 1 11111 2233444556999999999988766
Q ss_pred h----hHHHHHHHHHhcCCcEEEEEecCCCCChHHH
Q 026538 190 P----RDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 190 ~----~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~ 221 (237)
. ....+++.+. ++|+++|+||+|+.+....
T Consensus 328 ~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 328 DDELTEIRELKAAHP--AAKFLTVANKLDRAANADA 361 (476)
T ss_dssp GGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH
T ss_pred hhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch
Confidence 6 4445555554 6899999999999866544
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.85 E-value=6.9e-21 Score=160.35 Aligned_cols=138 Identities=24% Similarity=0.298 Sum_probs=103.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEc-CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
....|+++|.+|||||||+|+|++. ....+++.+++|++.. .... +..+.+|||||+.+........+.+.....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 4458999999999999999999998 5567788888887643 2233 678999999998764322333333434444
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHH-HHHHHhcCCcEEEEEecCCCC-ChHHHHHHHHHHHHHH
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEEVI 232 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~-~~~l~~~~~piilv~NK~Dl~-~~~~~~~~~~~l~~~l 232 (237)
.++.. +|++++|+|++.+.+..+... ++.+...+.|+++|+||+|+. +........+.+.+.+
T Consensus 88 ~~l~~---aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~ 152 (308)
T 3iev_A 88 QSLEE---ADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH 152 (308)
T ss_dssp HHHHH---CSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC
T ss_pred HHhhc---CCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhc
Confidence 44443 999999999998888877776 888888889999999999998 6666666666666554
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=1.5e-20 Score=157.79 Aligned_cols=122 Identities=22% Similarity=0.281 Sum_probs=93.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.+|+++|.+|||||||+|+|++. ....+++.+++|++.. ....+..+.+|||||+.++. ..+.+.+......++
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~--~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM--DALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC--SHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh--hHHHHHHHHHHHHHH
Confidence 47999999999999999999998 5566778888887632 22346789999999987642 223333333333444
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~ 220 (237)
..+|++++|+|++++++..+..+++.+... +.|+++|+||+|+.....
T Consensus 85 ---~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 85 ---ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp ---SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH
T ss_pred ---hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH
Confidence 449999999999888888777777888776 899999999999986554
No 7
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.83 E-value=4e-21 Score=169.69 Aligned_cols=172 Identities=22% Similarity=0.249 Sum_probs=105.4
Q ss_pred cceEEeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhc
Q 026538 35 RPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 35 ~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
++++... .+++.+||++ +++.............+................. ...++|+++|++|+|||||+|+|++
T Consensus 171 ~l~~~~a-~iEa~iDf~e-d~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~--r~~~kV~ivG~~nvGKSSLln~L~~ 246 (462)
T 3geh_A 171 NCLDILA-EIEARIDFEE-DLPPLDDEAIISDIENIAAEISQLLATKDKGELL--RTGLKVAIVGRPNVGKSSLLNAWSQ 246 (462)
T ss_dssp HHHHHHH-HHHHHTTSSS-SSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHH--HHCEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHH-HHHhhccccc-cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--cCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3344433 7888999998 6665544433332222322222222111111101 1346899999999999999999999
Q ss_pred ccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHH-HHHHHhccccccEEEEEEeCCCCCCh
Q 026538 115 QWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVKP 190 (237)
Q Consensus 115 ~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~v~~vvd~~~~~~~ 190 (237)
. ....+++.+++|++. .+...+.++.+|||||+.+.. +. +..+ +.........+|++++|+|++.++..
T Consensus 247 ~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~--~~----ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~ 319 (462)
T 3geh_A 247 S-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS--DQ----VEKIGVERSRQAANTADLVLLTIDAATGWTT 319 (462)
T ss_dssp H-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------------CCCCSCSEEEEEEETTTCSCH
T ss_pred C-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch--hH----HHHHHHHHHhhhhhcCCEEEEEeccCCCCCH
Confidence 8 446688889998875 344457889999999986521 11 1111 23334455569999999999988888
Q ss_pred hHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 191 RDHELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 191 ~~~~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
.+..+++.+.. .|+++|+||+|+.+..
T Consensus 320 ~~~~i~~~l~~--~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 320 GDQEIYEQVKH--RPLILVMNKIDLVEKQ 346 (462)
T ss_dssp HHHHHHHHHTT--SCEEEEEECTTSSCGG
T ss_pred HHHHHHHhccC--CcEEEEEECCCCCcch
Confidence 87777777654 7999999999997543
No 8
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.82 E-value=1.8e-20 Score=166.22 Aligned_cols=162 Identities=22% Similarity=0.276 Sum_probs=104.8
Q ss_pred cccccccCCCCCCCCCCChhHHHHHHHhhhhhhhHHHHhhhccCCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeec
Q 026538 42 AGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT 121 (237)
Q Consensus 42 ~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~ 121 (237)
+.+++.+|||+| ++..... .......+.......+......... ...++|+++|.+|||||||+|+|++. ....+
T Consensus 197 ~~ie~~idf~ee-i~~~~~~-i~~~~~~l~~eL~~l~~~~~~~~~~--r~~~kV~ivG~pnvGKSSLln~L~~~-~~a~v 271 (482)
T 1xzp_A 197 AEIRVELDYPDE-IETNTGE-VVTRLERIKEKLTEELKKADAGILL--NRGLRMVIVGKPNVGKSTLLNRLLNE-DRAIV 271 (482)
T ss_dssp HHHHHHHHSTTT-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHCEEEEEECCHHHHTCHHHHHHHHH-TBCCC
T ss_pred HHhhhcCCCCcc-ccchHHH-HHHHHHHHHHHHHHHHHhhhhhhhc--cCCCEEEEECcCCCcHHHHHHHHHCC-CCCcc
Confidence 357778999987 6643222 2222222222222222222111111 13469999999999999999999998 44678
Q ss_pred cCCCCceEEEE---EEEcCCeEEEEeCCCCC-Ccccc---hHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHH
Q 026538 122 SDKPGLTQTIN---FFKLGTKLCLVDLPGYG-FAYAK---EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 194 (237)
Q Consensus 122 ~~~~g~t~~~~---~~~~~~~~~liDTpG~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~ 194 (237)
++.+++|++.. +...+..+.+|||||+. +.... ..+...+. ++. .+|++++|+|++.+.+..+.+
T Consensus 272 s~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~-----~~~---~aD~vl~VvD~s~~~s~~~~~ 343 (482)
T 1xzp_A 272 TDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQ-----EIE---KADIVLFVLDASSPLDEEDRK 343 (482)
T ss_dssp CCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHH-----HHH---HCSEEEEEEETTSCCCHHHHH
T ss_pred CCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHH-----Hhh---cccEEEEEecCCCCCCHHHHH
Confidence 89999998752 33347789999999987 53211 11222222 222 299999999998877776666
Q ss_pred HHHHHHhcCCcEEEEEecCCCCCh
Q 026538 195 LISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 195 ~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
+++.+ .++|+++|+||+|+.+.
T Consensus 344 il~~l--~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 344 ILERI--KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHHHH--TTSSEEEEEEECSSCCC
T ss_pred HHHHh--cCCCEEEEEECcccccc
Confidence 66655 36899999999999743
No 9
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=1.4e-19 Score=159.38 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=80.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
|+|+++|.+|||||||+|+|++. ..+.+++.+|+|++.. ....+..+.+|||||+.... .+.+...+......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCccccc-cchHHHHHHHHHHHHH
Confidence 68999999999999999999998 4567889999998753 23347789999999986421 1112222233333444
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
.. +|++++|+|+..+++..+..+.+++...++|+++|+||+|+.
T Consensus 80 ~~---ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 80 RE---ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp TT---CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred Hh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 43 999999999998888888788888877789999999999985
No 10
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=1.2e-19 Score=159.64 Aligned_cols=119 Identities=20% Similarity=0.350 Sum_probs=78.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
++|+++|.+|||||||+|+|++. ..+.+.+.+|+|++...... +..+.+|||||+..... .+...+......++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--PFLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch--hHHHHHHHHHHHHH
Confidence 79999999999999999999998 55678899999998765543 67799999999863211 12233333333444
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.. +|++++|+|+..+++..+.++.+.+...++|+++|+||+|+..
T Consensus 81 ~~---ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 81 DE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HH---CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred Hh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 33 9999999999998888888888888888999999999999864
No 11
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.80 E-value=8.1e-19 Score=145.26 Aligned_cols=141 Identities=21% Similarity=0.268 Sum_probs=89.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccC-------CCCceEEEEEEE---cC--CeEEEEeCCCCCCcccc-hHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFK---LG--TKLCLVDLPGYGFAYAK-EEV 157 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-------~~g~t~~~~~~~---~~--~~~~liDTpG~~~~~~~-~~~ 157 (237)
..++|+++|.+|+|||||+|+|++.. ...... .++++.+..... .+ ..+.+|||||+++.... ...
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSC-C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 34799999999999999999999874 222221 222222222111 12 37999999999764221 111
Q ss_pred HHHH---HHHHHHHHhc----------cccccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHH
Q 026538 158 KDAW---EELVKEYVST----------RVSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (237)
Q Consensus 158 ~~~~---~~~~~~~~~~----------~~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~ 223 (237)
.... ..-...|+.. ...+|+++++++. .+++...+..+++.+.. ++|+++|+||+|+.+..+...
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~ 164 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQ 164 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHH
Confidence 1111 1111333322 1126788888864 45888888899988887 899999999999998888877
Q ss_pred HHHHHHHHHH
Q 026538 224 RAMQIEEVIF 233 (237)
Q Consensus 224 ~~~~l~~~l~ 233 (237)
..+.+.+.+.
T Consensus 165 ~~~~i~~~l~ 174 (274)
T 3t5d_A 165 FKKQIMKEIQ 174 (274)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 12
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.80 E-value=2.8e-19 Score=153.61 Aligned_cols=193 Identities=20% Similarity=0.140 Sum_probs=96.6
Q ss_pred ccccccCCChhhhHHHHHhhcCCCcceEEeecccccccCCC--CCCCCCCChhHHHHHHHhhhh--hhhHHHHhh--hcc
Q 026538 11 AQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAP--LDNIPFSTSSERERIEENIFR--NKLEFFAAA--KVS 84 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~ 84 (237)
++..++|+..+.+.+..+++ +.|..+....++ +++. .+. ....++..+..++.. ..+..+... ..+
T Consensus 100 t~~~~~q~~la~l~~~~~rl-~~~~~l~~~~~~----i~~~g~ge~---~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r 171 (364)
T 2qtf_A 100 SKEAKMQIELARLKYELPII-KETYTKSKIGEQ----QGPLGAGTY---GVESTIKFYKRRINKLMKELESIKIFKEKSI 171 (364)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HHC----------------------------CHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccchhHHHHHHHHhhhchhh-hhhhHHHHhcCC----CCcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346788899999999999 666554444332 3443 332 112223344444422 222222211 122
Q ss_pred CCCCCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHH
Q 026538 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAW 161 (237)
Q Consensus 85 ~~~~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~ 161 (237)
..+.+.+.+.|+++|++|||||||+|+|++.. ..+.+.+++|.+.. +...+..+.+|||||+......+.+ +.+
T Consensus 172 ~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lv-e~f 248 (364)
T 2qtf_A 172 ESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIV-DAF 248 (364)
T ss_dssp -------CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGH-HHH
T ss_pred HhhhhcCCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHH-HHH
Confidence 22333456679999999999999999999984 35667777776542 2233678999999997542222222 222
Q ss_pred HHHHHHHHhccccccEEEEEEeCCCCC--ChhH----HHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 162 EELVKEYVSTRVSLKRVCLLIDTKWGV--KPRD----HELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~--~~~~----~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
.... .....+|++++|+|++++. .... ..+++.+...+.|+++|+||+|+.+.
T Consensus 249 ~~tl----~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 249 FVTL----SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp HHHH----HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred HHHH----HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 2222 2334489999999987653 1111 12233333346899999999999864
No 13
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.80 E-value=4e-20 Score=151.75 Aligned_cols=121 Identities=23% Similarity=0.198 Sum_probs=86.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
++|+++|.+|||||||+|+|++.. ..+++.+|+|.+... ...+..+.+|||||+...............+...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 689999999999999999999984 567788888866533 224678999999998653221000011123344454
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
.. ..+|++++|+|++.. .....+..++...++|+++|+||+|+...
T Consensus 80 ~~-~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 80 ID-LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp HH-SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred hh-CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 32 349999999998752 44556777777789999999999998643
No 14
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=3.6e-19 Score=134.68 Aligned_cols=119 Identities=24% Similarity=0.288 Sum_probs=80.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
++|+++|.+|+|||||+|+|++. ........+++|.+... ...+..+.+|||||...... ....+......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHHH
Confidence 68999999999999999999988 33445566666655432 23466899999999765221 1111222223333
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
. .+|++++|+|+..+++.....+.+.+...+.|+++|+||+|+...
T Consensus 78 ~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 78 E---DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp T---TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred H---hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 3 389999999998887777777777777778999999999999754
No 15
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=2.3e-19 Score=158.73 Aligned_cols=121 Identities=21% Similarity=0.357 Sum_probs=81.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+|+|++. ....+.+.+|+|++...... +..+.+|||||+... .+...+.+......
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEI 98 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc--chHHHHHHHHHHHh
Confidence 4589999999999999999999998 55678889999998766553 678999999998642 22223333344444
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|+..+++..+.++.+.+...++|+++|+||+|+..
T Consensus 99 ~~~~---ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 99 AMDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 145 (456)
T ss_dssp HHHH---CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----
T ss_pred hHhh---CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchh
Confidence 4443 9999999999989999999999999888999999999999864
No 16
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=144.37 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=77.4
Q ss_pred CCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCC--CceEEEE---EEEcCCeEEEEeCCCCCCcccc-hHHHHHHH
Q 026538 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQTIN---FFKLGTKLCLVDLPGYGFAYAK-EEVKDAWE 162 (237)
Q Consensus 89 ~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~--g~t~~~~---~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~ 162 (237)
....++|+++|.+|||||||+|+|++... ..+..+ ++|.+.. ....+..+.||||||+.+.... .... .
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~---~ 100 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKV--FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETS---K 100 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCC--SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHH---H
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCc--CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHH---H
Confidence 34568999999999999999999999842 233333 4554432 3334678999999998764221 2222 2
Q ss_pred HHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHH-----hcCCcEEEEEecCCCCChHHHH
Q 026538 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVA 222 (237)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-----~~~~piilv~NK~Dl~~~~~~~ 222 (237)
.+...+......+|++++|+|+.. +...+..++..+. ....|+++|+||+|+....++.
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHH
Confidence 333334444456899999999874 4455555555543 2346999999999998765554
No 17
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.79 E-value=1.7e-18 Score=139.21 Aligned_cols=124 Identities=18% Similarity=0.140 Sum_probs=79.8
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
...++|+++|.+|||||||+|+|++.. . ...+.+++|++..... .+..+.+|||||+.+....+.....+.. +.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN-V-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC-E-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-C-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 456899999999999999999999984 2 3566777777765433 3568999999998542111110000111 22
Q ss_pred HHHhccccccEEEEEEeCCCCCCh---hHHHHHHHHHhc--CCcEEEEEecCCCCChH
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKP---RDHELISLMERS--QTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~---~~~~~~~~l~~~--~~piilv~NK~Dl~~~~ 219 (237)
.+.. .+|++++|+|++...+. ....++..+... +.|+++|+||+|+....
T Consensus 104 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 104 ALAH---INGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp HHHT---SSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred Hhhc---cccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence 2222 37999999998865432 234566666664 79999999999997643
No 18
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.79 E-value=6.8e-20 Score=151.82 Aligned_cols=122 Identities=20% Similarity=0.161 Sum_probs=85.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|.+|||||||+|+|++.. ..+++.+|+|.+.... ..+..+.+|||||+.+.............+...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 3699999999999999999999984 5778888988765432 2467899999999765321100000111223333
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
+. ...+|++++|+|++.. .....+..++...++|+++|+||+|+...
T Consensus 81 ~~-~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 81 IL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (274)
T ss_dssp HH-HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred Hh-hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhh
Confidence 32 2349999999998752 44456667777779999999999998643
No 19
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=2.1e-18 Score=136.49 Aligned_cols=144 Identities=40% Similarity=0.571 Sum_probs=91.1
Q ss_pred CCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 89 ~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.....+|+++|++|||||||+|+|++......+.+.+|+|........+..+.+|||||+..........+.|...+..|
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 34567999999999999999999998843445567777776554443334789999999864211111123344555556
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
+.....++.+++++|...+....+..+..++...+.|+++|.||+|+.+..+.+.....+++.+
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~ 166 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV 166 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHH
Confidence 6555568999999999877666555666777777899999999999987665444344444443
No 20
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=1.9e-19 Score=158.39 Aligned_cols=138 Identities=21% Similarity=0.279 Sum_probs=90.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccc-hHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELV 165 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~ 165 (237)
...++|+++|.+|||||||+|+|++. ....+++.+|+|++. .+...+..+.||||||+...... +.++ .+..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e-~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTE-KYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCS-HHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHH-HHHHHH
Confidence 35689999999999999999999998 445678889999886 33445678999999997542110 0011 111110
Q ss_pred -HHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHH--HHHHHHHHHHHH
Q 026538 166 -KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEEVI 232 (237)
Q Consensus 166 -~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~--~~~~~~~l~~~l 232 (237)
..++. .+|++++|+|++.+.+.++..++..+...++|+++|+||+|+.+..+ ..+..+.+.+.+
T Consensus 251 ~~~~~~---~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 251 ALKAID---RSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF 317 (436)
T ss_dssp HHHHHH---HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHC
T ss_pred HHHHHH---hCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhc
Confidence 11222 28999999999999888888888888888999999999999986433 233444444443
No 21
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.78 E-value=3e-18 Score=133.10 Aligned_cols=124 Identities=28% Similarity=0.485 Sum_probs=85.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccc-hHHHHHHHHHHHHHHhc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVKEYVST 171 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~~~~ 171 (237)
++|+++|.+|||||||+|+|++.. ......+++|.+......+ .+.+|||||+...... ....+.+..+...|+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999884 4455667777665544444 7999999997543211 11234455556666665
Q ss_pred -cccccEEEEEEeCCCC-----------CChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 172 -RVSLKRVCLLIDTKWG-----------VKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 172 -~~~~d~v~~vvd~~~~-----------~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
...++++++|+|.... ....+..+...+...++|+++|+||+|+....
T Consensus 79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 6668899999997531 11122334455556689999999999998654
No 22
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.78 E-value=1.4e-18 Score=141.81 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=82.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccC-CCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
..++|+++|.+|||||||+|+|++.. ...... ..++|... .....+..+.+|||||+.+...... ......+..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR-RFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKT-DPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC-CC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHH-STTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC-CccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcH-HHHHHHHHH
Confidence 45799999999999999999999984 233322 22355443 2334477899999999865321110 111223333
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc------CCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS------QTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~Dl~~ 217 (237)
.+......+|++++|+|+.. ++..+..+++.+... +.|+++|.||+|+..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 33344456999999999874 677777777766653 689999999999964
No 23
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=2.4e-18 Score=142.12 Aligned_cols=123 Identities=21% Similarity=0.173 Sum_probs=84.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|.+|+|||||+|+|++. ....+++.+++|.+. .....+..+.+|||||+.+..... ..+...+..|
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~---~~~~~~i~~~ 114 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN---DMALNIIKSF 114 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC---HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccch---HHHHHHHHHH
Confidence 479999999999999999999988 444566666766543 333446789999999986532111 1111222333
Q ss_pred HhccccccEEEEEEeCCC-CCChhHHHHHHHHHhc-C----CcEEEEEecCCCCChH
Q 026538 169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI 219 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~-~----~piilv~NK~Dl~~~~ 219 (237)
+. ...+|+++||+|... .+...+..+++.+... + .|+++|+||+|+.+++
T Consensus 115 ~~-~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 115 LL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TT-TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hh-cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 32 234899999988643 4666666777766543 2 6999999999998654
No 24
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.78 E-value=1.5e-18 Score=133.68 Aligned_cols=118 Identities=26% Similarity=0.285 Sum_probs=80.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHH-HHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDA-WEELVKE 167 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~-~~~~~~~ 167 (237)
..+|+++|.+|||||||+|+|++. ....+++.+++|.+.. +...+..+.+|||||+.... ...+.. .... ..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~-~~ 79 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS--DEVERIGIERA-WQ 79 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS--SHHHHHHHHHH-HH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch--hHHHHHHHHHH-HH
Confidence 468999999999999999999987 3345667777776542 22335679999999986521 111110 1111 11
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc---CCcEEEEEecCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS---QTKYQVVLTKTDTV 216 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~---~~piilv~NK~Dl~ 216 (237)
++ ..+|++++|+|++...+.....++..+... ++|+++|+||+|+.
T Consensus 80 ~~---~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 80 EI---EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp HH---HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred HH---HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 22 238999999998876555555555555432 68999999999984
No 25
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.77 E-value=2.8e-18 Score=143.94 Aligned_cols=130 Identities=24% Similarity=0.254 Sum_probs=93.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCC-CcccchHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYG-FAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~~ 168 (237)
.+|+++|++|||||||+|+|++. ....+++.+++|++.. +...+..+.+|||||+. .+ .... -..+....
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~--~~~l---~~~~~~~~ 82 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAI---NRLMNKAA 82 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHH---HHHHTCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc--hhhH---HHHHHHHH
Confidence 48999999999999999999998 5567788888886432 22346679999999985 21 0000 01111122
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC-hHHHHHHHHHHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIE 229 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~-~~~~~~~~~~l~ 229 (237)
......+|++++|+|+.. ++..+..+++.+...+.|+++|+||+|+.. .....+..+.+.
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~ 143 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLA 143 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHH
Confidence 334556899999999987 888887788878777899999999999987 444444444443
No 26
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=1.8e-18 Score=152.94 Aligned_cols=138 Identities=21% Similarity=0.272 Sum_probs=93.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
...++|+++|.+|+|||||+|+|++. ....+++.+|+|.+. .+...+..+.+|||||+..........+.+..+..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 45689999999999999999999987 346788889998874 44445778999999997643111000011111111
Q ss_pred -HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH--HHHHHHHHHHHH
Q 026538 167 -EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI--DVARRAMQIEEV 231 (237)
Q Consensus 167 -~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~~~ 231 (237)
.++. .+|++++|+|+..++...+..++..+...++|+++|+||+|+.+.. ...+..+.+++.
T Consensus 272 ~~~~~---~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 272 LKAID---RSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDH 336 (456)
T ss_dssp HHHHH---HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHH
T ss_pred HHHHh---hCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHh
Confidence 1222 2899999999999999999999998888899999999999997532 233444444444
No 27
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.76 E-value=8.9e-18 Score=140.17 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=86.3
Q ss_pred CCCCCEEEEecCCCCchhhHHHHHhccccee-----eccCCCC----------------------ceEE-----------
Q 026538 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQT----------- 130 (237)
Q Consensus 89 ~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~-----~~~~~~g----------------------~t~~----------- 130 (237)
....++|+++|.+|||||||+|+|++.. .. .++..|+ +|.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~-~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSC-CSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCC-cCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999984 22 2333443 2221
Q ss_pred ---------------EEEEEc-CCeEEEEeCCCCCCccc---chHHHHHHHHHHHHHHhccccccEE-EEEEeCCCCCCh
Q 026538 131 ---------------INFFKL-GTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRV-CLLIDTKWGVKP 190 (237)
Q Consensus 131 ---------------~~~~~~-~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v-~~vvd~~~~~~~ 190 (237)
+..... ...+.||||||+..... .+.....+..+...|+.. ++.+ ++|+|++.++..
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~il~v~d~~~~~~~ 178 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK---ENCLILAVSPANSDLAN 178 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS---TTEEEEEEEESSSCGGG
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC---CCeEEEEEecCCcchhh
Confidence 011111 36899999999875321 233334556666677664 5544 579999877666
Q ss_pred hHH-HHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 191 RDH-ELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 191 ~~~-~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
.+. .+++.+...+.|+++|+||+|+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 179 SDALKIAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp CHHHHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred hHHHHHHHHhCCCCCeEEEEEEccccCCCC
Confidence 653 56777776789999999999997543
No 28
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.75 E-value=2.6e-18 Score=141.05 Aligned_cols=117 Identities=26% Similarity=0.291 Sum_probs=84.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|.+|||||||+|+|++.. ..++..+|+|.+.... ..+..+.+|||||+....... .. ..+...|
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~---e~v~~~~ 78 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK--QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS-ID---EKIARDY 78 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS-HH---HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC-HH---HHHHHHH
Confidence 4689999999999999999999984 3467778888765432 236789999999976432111 01 1233344
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
+.. ..+|++++|+|++.. .....+...+...++|+++|+||+|+..
T Consensus 79 ~~~-~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 79 LLK-GDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp HHH-SCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred Hhh-cCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 432 348999999998853 3445566777777999999999999853
No 29
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.75 E-value=2.1e-17 Score=148.95 Aligned_cols=135 Identities=21% Similarity=0.307 Sum_probs=93.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccccee--eccCCCCceEEEEEEEc-------------------------C-----
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFKL-------------------------G----- 137 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~--~~~~~~g~t~~~~~~~~-------------------------~----- 137 (237)
...++|+|+|.+|+|||||+|+|++. ... .++..++|++...+... +
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~-~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQ-EVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTS-CCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC-ccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 46789999999999999999999998 332 45666666543221110 0
Q ss_pred ------------CeEEEEeCCCCCCcccchHHHHH--HHHHHHHHHhccccccEEEEEEeCCC-CCChhHHHHHHHHHhc
Q 026538 138 ------------TKLCLVDLPGYGFAYAKEEVKDA--WEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS 202 (237)
Q Consensus 138 ------------~~~~liDTpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~ 202 (237)
..+.||||||+.+.... .+.+. +......++.. +|++++|+|+.. +....+..+++.+...
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~-~~~~~~~f~~~~~~~l~~---aD~il~VvDa~~~~~~~~~~~~l~~l~~~ 217 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQ-RVSRGYDFPAVLRWFAER---VDLIILLFDAHKLEISDEFSEAIGALRGH 217 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC--------CCSCHHHHHHHHHHH---CSEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred cceEEeccccccCCEEEEECcCCCCcchh-HHHHHhhHHHHHHHHHHh---CCEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence 25899999998752110 01000 22233333333 899999999976 4677778888888877
Q ss_pred CCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 203 QTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 203 ~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
+.|+++|+||+|+.+.+++.+....+.
T Consensus 218 ~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp GGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 899999999999998888777766665
No 30
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.75 E-value=1.6e-17 Score=131.86 Aligned_cols=126 Identities=18% Similarity=0.316 Sum_probs=80.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHH-HH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEE-LV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~-~~ 165 (237)
..++|+++|.+|||||||+++|++.. .....++++.+...... +..+.+|||||... +.. +.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 72 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES----------LRFQLL 72 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH----------HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCChh----------HHHHHH
Confidence 45799999999999999999999874 22223333333322222 46799999999632 122 34
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhHHH----HHHHHH-----hcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~----~~~~l~-----~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
..|+.. +|++++|+|+.. ....... +...+. ..++|+++|+||+|+..........+.+.+.+.
T Consensus 73 ~~~~~~---~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 73 DRFKSS---ARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp HHHGGG---EEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhh---CCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 445444 899999999875 1111222 222222 236899999999999866555556666665554
No 31
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.75 E-value=1.1e-17 Score=137.26 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=82.4
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCC-ceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g-~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
...++|+|+|.+|||||||+|+|++.. ....+..+. +|.+. .....+..+.||||||+.+..... ......+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~--~~~~~~i~ 96 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQ-AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC--EALYKEVQ 96 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSC-CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC--HHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH--HHHHHHHH
Confidence 355799999999999999999999883 233333333 45443 233346789999999986542211 11112222
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc-----CCcEEEEEe-cCCCCCh
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT-KTDTVFP 218 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~N-K~Dl~~~ 218 (237)
..+......+|++++|+|+.. +...+..+++.+... ..|+++|+| |+|+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 222223345999999999885 667666666666654 568888777 9999743
No 32
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.75 E-value=2.3e-17 Score=138.73 Aligned_cols=127 Identities=22% Similarity=0.300 Sum_probs=80.8
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccce----eeccCCCC---ceEE--------------------------------
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSDKPG---LTQT-------------------------------- 130 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~----~~~~~~~g---~t~~-------------------------------- 130 (237)
...|+|+|+|.+|+|||||+|+|++.... ..++..|+ +++.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 46789999999999999999999998321 22333342 2221
Q ss_pred ---------------------EEEEE-cCCeEEEEeCCCCCCccc---chHHHHHHHHHHHHHHhccccccEEEEEEeC-
Q 026538 131 ---------------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDT- 184 (237)
Q Consensus 131 ---------------------~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~- 184 (237)
+.+.. .+..+.+|||||+..... .......+......|+.. +|++++|+|+
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~iilvvd~~ 178 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTPA 178 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEES
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcC---CCeEEEEEEec
Confidence 00111 246799999999864210 112233344455555554 8999999996
Q ss_pred CCCCChhH-HHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 185 KWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 185 ~~~~~~~~-~~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
..++...+ ..+++.+...+.|+++|+||+|+....
T Consensus 179 ~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 179 NTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp SSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred CcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence 55555444 467777777789999999999997543
No 33
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.4e-18 Score=132.32 Aligned_cols=133 Identities=21% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccccee-eccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~-~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
...++|+++|.+|||||||+|+|++..... ..+..++++.+. .+..+.+|||||+...... +...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~------~~~~~~~~ 115 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRYK------LSDYLKTR 115 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSSCC------HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHHHH------HHHHHHhh
Confidence 456899999999999999999999874211 112223233222 4677999999997642111 12222222
Q ss_pred HhccccccEEEEEEeCC-CCCCh-hHHHHH-HHHH------hcCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 026538 169 VSTRVSLKRVCLLIDTK-WGVKP-RDHELI-SLME------RSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYL 235 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~-~~~~~-~~~~~~-~~l~------~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~~~ 235 (237)
. ..+|++++|+|++ ..-.. ....++ ..+. ..+.|+++|+||+|+.......+..+.+.+.++.+
T Consensus 116 ~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~l 188 (193)
T 2ged_A 116 A---KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKV 188 (193)
T ss_dssp G---GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred c---ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHHH
Confidence 2 3389999999987 21111 111222 2221 13799999999999987777777777777766543
No 34
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=2e-17 Score=131.67 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=77.1
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeec--cCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~--~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...++|+++|++|+|||||+|+|++... ... +..+.++.+ ..+..+.+|||||+... ...+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~~------~~~~~~~~~~ 78 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQEPLSAAD----YDGSGVTLVDFPGHVKL------RYKLSDYLKT 78 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSC-CCBCCCSSCEEETT----GGGSSCEEEECCCCGGG------THHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCeeeecCceEEEE----eeCceEEEEECCCcHHH------HHHHHHHHHh
Confidence 4568999999999999999999998741 111 122222211 14667999999997531 1122222221
Q ss_pred HHhccccccEEEEEEeCC-C--CCChhHHHHHHHHHh------cCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538 168 YVSTRVSLKRVCLLIDTK-W--GVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQI 228 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~-~--~~~~~~~~~~~~l~~------~~~piilv~NK~Dl~~~~~~~~~~~~l 228 (237)
. ...+|++++|+|+. . .+......+...+.. .++|+++|+||+|+..........+.+
T Consensus 79 ~---~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 145 (218)
T 1nrj_B 79 R---AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 145 (218)
T ss_dssp H---GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred c---cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHH
Confidence 1 22379999999987 2 333333333333322 479999999999998655444333333
No 35
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.74 E-value=5.5e-18 Score=129.32 Aligned_cols=113 Identities=20% Similarity=0.186 Sum_probs=73.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..++|+++|.+|+|||||+|+|++.. .....+..+.+.. .+...+..+.+|||||.... ......++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~- 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVE-TVTYKNLKFQVWDLGGLTSI----------RPYWRCYY- 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEEE-EEEETTEEEEEEEECCCGGG----------GGGGGGGC-
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC-CCCcCCcCccceE-EEEECCEEEEEEECCCChhh----------hHHHHHHh-
Confidence 45799999999999999999999873 2222222232221 22234678999999997431 11122222
Q ss_pred ccccccEEEEEEeCCCCCCh--hHHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 171 TRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
..+|++++|+|++...+. ....+...+.. .+.|+++|+||+|+.+.
T Consensus 73 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 73 --SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp --TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 238999999998765332 22223333332 47899999999999765
No 36
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.74 E-value=1.9e-17 Score=129.95 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=74.4
Q ss_pred CCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
+....++|+++|.+|||||||+|++.+............++...... .....+.+|||||...-.... |.
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----~~-- 88 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT-----FD-- 88 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT-----CC--
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh-----hh--
Confidence 33456899999999999999999998863111111111122222222 234789999999965311000 00
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHh-----cCCcEEEEEecCCCCChHH
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~~~ 220 (237)
...|+.. +|++++|+|+...+......+..++.. .+.|+++|+||+|+.+...
T Consensus 89 ~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (196)
T 3llu_A 89 YEMIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDH 146 (196)
T ss_dssp HHHHHHT---CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHH
T ss_pred ccccccc---CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhh
Confidence 0233333 999999999887633333444444433 3789999999999987543
No 37
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.74 E-value=3e-17 Score=134.98 Aligned_cols=121 Identities=21% Similarity=0.193 Sum_probs=82.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|.+|+|||||+|+|++. ....+++.+++|... .+...+..+.||||||+.+..... +.+...+..+
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~---~~~~~~i~~~ 111 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN---HQALELIKGF 111 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC---HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch---HHHHHHHHHH
Confidence 479999999999999999999998 444566667666543 233447789999999986532211 1122223333
Q ss_pred HhccccccEEEEEEeCCC-CCChhHHHHHHHHHhc-----CCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~Dl~~ 217 (237)
+. ...+|++++|++... .+...+..+++.+... ..|+++|+||+|+.+
T Consensus 112 l~-~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LV-NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TT-TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred Hh-cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 32 234899999987643 4566666777766653 249999999999963
No 38
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.74 E-value=3.4e-18 Score=141.35 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=83.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.++|+++|.+|||||||+|+|++.. ..+++.+|+|.+...... +..+.+|||||...-.... . ...+...|+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~-~---~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS-P---EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS-H---HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC-h---HHHHHHHHH
Confidence 4689999999999999999999974 457778888876433322 5689999999976421111 1 123344455
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.. ..+|++++|+|++.. .....+...+...++|+++|+||+|+..
T Consensus 77 ~~-~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 77 LS-QRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp HT-TCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred hc-CCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 43 348999999998752 3334555666667899999999999853
No 39
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.73 E-value=8.3e-18 Score=131.67 Aligned_cols=115 Identities=16% Similarity=0.193 Sum_probs=75.2
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeec--cCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~--~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...++|+++|.+|||||||+|+|++.. ...+ .+..+.+.. .+...+..+.+|||||.... ..+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 82 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ-SSSKHITATVGYNVE-TFEKGRVAFTVFDMGGAKKF----------RGLWET 82 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC-----CCCCCSSEEEE-EEEETTEEEEEEEECCSGGG----------GGGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC-CcccccccccceeEE-EEEeCCEEEEEEECCCCHhH----------HHHHHH
Confidence 456799999999999999999999984 2332 344443322 23345778999999997531 112222
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc-----------CCcEEEEEecCCCCChH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----------QTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~-----------~~piilv~NK~Dl~~~~ 219 (237)
|+ ..+|++++|+|++...+... ..++..+... ++|+++|+||+|+....
T Consensus 83 ~~---~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 143 (199)
T 4bas_A 83 YY---DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK 143 (199)
T ss_dssp GC---TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred HH---hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence 33 23999999999986532222 2334333332 78999999999998663
No 40
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.73 E-value=2.6e-18 Score=158.88 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=82.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCc--------------eEEE-------------------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--------------TQTI------------------------- 131 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~--------------t~~~------------------------- 131 (237)
..++|+|+|.+|+|||||+|+|+|. ...+++..|+| |.+.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~-~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGE-NLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTS-SCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4579999999999999999999998 55666666766 3221
Q ss_pred -----------------EEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCCh
Q 026538 132 -----------------NFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP 190 (237)
Q Consensus 132 -----------------~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~ 190 (237)
.++.. ...+.||||||+.+... .......|+.. +|++++|+|++.+++.
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~~---aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVNN---CHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHHS---SSEEEEEEETTSTTCH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHHh---CCEEEEEEeCCCccch
Confidence 00000 04699999999764211 11233344433 9999999999888777
Q ss_pred hHHHHHH-HHHhcCCcEEEEEecCCCCCh
Q 026538 191 RDHELIS-LMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 191 ~~~~~~~-~l~~~~~piilv~NK~Dl~~~ 218 (237)
.+...+. .+...+.|+++|+||+|+...
T Consensus 217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 217 GERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred hHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 7766553 555567899999999998754
No 41
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=3.2e-17 Score=144.30 Aligned_cols=126 Identities=29% Similarity=0.398 Sum_probs=84.0
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccch-HHHHHHHHH-
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEEL- 164 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~- 164 (237)
...++|+++|++|||||||+|+|++. ....+++.+|+|++. .+...+..+.+|||||+....... ...+.+...
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 35679999999999999999999998 446789999999875 333457789999999974311000 000000000
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
...++ ..+|++++++|+..+.+..+..+...+...+.|+++|+||+|+....
T Consensus 257 ~~~~i---~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 257 VVDSI---EKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHH---HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred HHHHH---hhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCch
Confidence 01122 22899999999988887777777777777899999999999997643
No 42
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.73 E-value=6.7e-18 Score=129.79 Aligned_cols=114 Identities=22% Similarity=0.282 Sum_probs=81.8
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
...++|+++|.+|||||||+|+|++.. ......+++|.+. .+...+..+.+|||||....... .
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~- 72 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK--VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTM----------R- 72 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC--SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCS----------C-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc--cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHH----------H-
Confidence 456899999999999999999999873 2223333333322 23334677999999997542110 1
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
......+|++++|+|+..+......+.+..+...++|+++|+||+|+...
T Consensus 73 --~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 73 --ARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp --CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred --HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 12223489999999988777777777777777778999999999999753
No 43
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.73 E-value=4.6e-18 Score=140.46 Aligned_cols=117 Identities=24% Similarity=0.269 Sum_probs=83.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|++|||||||+|+|++.. ..++..+++|.+... ...+..+.+|||||+........ . ..+...|
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~---~~~~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSI-D---ELIARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCH-H---HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCH-H---HHHHHHh
Confidence 4699999999999999999999984 367778888776532 23467799999999765222111 1 1223344
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC-CcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~Dl~~ 217 (237)
+. ...+|++++|+|++.. .....+...+...+ .|+++|+||+|+..
T Consensus 77 ~~-~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 77 IL-DGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp HH-TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred hh-ccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 43 2349999999998753 34445555566666 99999999999754
No 44
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.73 E-value=5.9e-17 Score=142.51 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=81.2
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccccee-----------------------------eccCCCCceEEEEEEE---cC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LG 137 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~-----------------------------~~~~~~g~t~~~~~~~---~~ 137 (237)
...++|+++|.+|+|||||+|+|+...... .....+|+|.+..... .+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 355799999999999999999997542100 0112256777764432 36
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCC-------hhHHHHHHHHHhcCCc-EEEE
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQTK-YQVV 209 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-------~~~~~~~~~l~~~~~p-iilv 209 (237)
..+.+|||||+.+ +..........+|++++|+|+..+.. .+..+.+..+...++| +++|
T Consensus 95 ~~~~iiDTPGh~~-------------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvv 161 (439)
T 3j2k_7 95 KHFTILDAPGHKS-------------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVL 161 (439)
T ss_pred eEEEEEECCChHH-------------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEE
Confidence 7899999999742 12222222233999999999988754 4566777777777888 9999
Q ss_pred EecCCCCC
Q 026538 210 LTKTDTVF 217 (237)
Q Consensus 210 ~NK~Dl~~ 217 (237)
+||+|+..
T Consensus 162 iNK~Dl~~ 169 (439)
T 3j2k_7 162 INKMDDPT 169 (439)
T ss_pred eecCCCcc
Confidence 99999964
No 45
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.73 E-value=1.5e-17 Score=128.97 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=76.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..++|+++|++|||||||+|+|++. ......+..|.+... +...+..+.+|||||... . ......|+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~-~~~~~~~l~i~Dt~G~~~------~----~~~~~~~~~ 82 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKS-VQSQGFKLNVWDIGGQRK------I----RPYWRSYFE 82 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEE-EEETTEEEEEEECSSCGG------G----HHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEE-EEECCEEEEEEECCCCHH------H----HHHHHHHhC
Confidence 4579999999999999999999988 434445555544322 222377899999999643 1 222334444
Q ss_pred ccccccEEEEEEeCCCCCChhH-HHHHHHH-H---hcCCcEEEEEecCCCCCh
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~---~~~~piilv~NK~Dl~~~ 218 (237)
. +|++++|+|++...+... ..++..+ . ..+.|+++|+||+|+...
T Consensus 83 ~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 83 N---TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp T---CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred C---CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 3 999999999875422221 2233322 2 246899999999999754
No 46
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.73 E-value=3.1e-17 Score=137.93 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=81.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.++|+++|.+|||||||+|+|++. .....+..+++|.+..+.. .+..+.+|||||...- ...........
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~ 76 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDH 76 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHH
Confidence 369999999999999999999987 3344556677777664432 3567999999996320 11111223334
Q ss_pred HHhccccccEEEEEEeCCCCCChhHH-HHHHHHHh-----cCCcEEEEEecCCCCChHHHH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER-----SQTKYQVVLTKTDTVFPIDVA 222 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~-----~~~piilv~NK~Dl~~~~~~~ 222 (237)
++.. +|++++|+|+++..+..+. .+..++.. .++|+++|+||+|+..+.+..
T Consensus 77 ~~~~---ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~ 134 (307)
T 3r7w_A 77 IFQM---VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKRE 134 (307)
T ss_dssp HHTT---CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH
T ss_pred Hhcc---CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhh
Confidence 4443 9999999999875443332 23333322 279999999999998754443
No 47
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.73 E-value=2.8e-17 Score=124.61 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=71.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
.+|+++|.+|||||||+|+|++.. .....+..+... ..+...+..+.+|||||... +..+...++..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~- 67 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQN- 67 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC-SSCCCCCSSCCE-EEEECSSCEEEEEECCCCGG----------GHHHHHHHTTT-
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-cCcccCcCceeE-EEEEECCEEEEEEEcCCChh----------hHHHHHHHhcc-
Confidence 479999999999999999999873 222222222111 12223468899999999743 12233344433
Q ss_pred ccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538 173 VSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~ 218 (237)
+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 68 --~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 68 --TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp --CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 999999999876422211 233333322 37899999999999764
No 48
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.72 E-value=7.5e-18 Score=128.68 Aligned_cols=115 Identities=30% Similarity=0.335 Sum_probs=74.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
++|+++|++|||||||+|+|++.. ...+..+++|.+. .+...+..+.+|||||......... ...+...|+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----~~~~~~~~~ 77 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI----DEIIARDYI 77 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH----HHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch----hHHHHHHHH
Confidence 589999999999999999999873 2345556655442 1222467899999999764211110 112333444
Q ss_pred hccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
.. ..++++++|+|+... .....++..+...+.|+++|+||+|+.
T Consensus 78 ~~-~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 78 IN-EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp HH-HCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred hc-CCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 32 238999999998742 223445556666689999999999985
No 49
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.72 E-value=2.9e-17 Score=124.76 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=65.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.++|+++|.+|||||||+|+|++. ......+.++++........ ...+.+|||||... +..+...++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~ 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCM 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCcc----------chhhhhhhh
Confidence 469999999999999999999987 44455666777765444333 35688999999643 122233333
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~ 218 (237)
.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+.+.
T Consensus 71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 71 AM---GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred hh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 33 899999999875322111 233444433 36899999999999753
No 50
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=3.3e-17 Score=127.38 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=73.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..++|+++|.+|||||||+|+|++... ....+..+.+.. .+...+..+.+|||||.... ..+...++.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~ 82 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE-EIVINNTRFLMWDIGGQESL----------RSSWNTYYT 82 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSC-EEEECCSCSSCE-EEEETTEEEEEEECCC--------------CGGGHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCCccceE-EEEECCEEEEEEECCCCHhH----------HHHHHHHhc
Confidence 347999999999999999999997743 344444443322 22234678999999997431 112233333
Q ss_pred ccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~ 218 (237)
. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 83 ~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 83 N---TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp T---CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred C---CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 3 999999999886533222 233333332 47899999999999753
No 51
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.72 E-value=4.7e-17 Score=139.38 Aligned_cols=125 Identities=20% Similarity=0.269 Sum_probs=85.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccccee-----eccCCCC----------------------ceEE-------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQT------------- 130 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~-----~~~~~~g----------------------~t~~------------- 130 (237)
..|+|+|+|.+|||||||+|+|++.. .. .++..|+ +|.+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~-~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC-CSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC-cCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 56899999999999999999999973 22 2333344 1111
Q ss_pred -------------EEEEEc-CCeEEEEeCCCCCCccc---chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH
Q 026538 131 -------------INFFKL-GTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 193 (237)
Q Consensus 131 -------------~~~~~~-~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~ 193 (237)
+..... +..+.||||||+..... .....+.+..++..|+.. ..+++++|+|+...+...+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiL~v~~a~~~~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS--TTEEEEEEEETTSCGGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC--CCeEEEEEecCCCccchhHH
Confidence 111111 46799999999865321 233344566777777763 25677778888776665554
Q ss_pred -HHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 194 -ELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 194 -~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
.+++.+...+.|+++|+||+|+.+.
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCT
T ss_pred HHHHHHhCcCCCceEEEeccccccCc
Confidence 3677777778999999999999754
No 52
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=1.9e-17 Score=128.53 Aligned_cols=117 Identities=30% Similarity=0.313 Sum_probs=80.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|++|||||||+|+|++.. ...+..+++|.+.. +...+..+.+|||||......... ...+...|
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----~~~~~~~~ 80 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI----DEIIARDY 80 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH----HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH----HHHHHHHH
Confidence 4699999999999999999999874 44556677665542 223467899999999765321111 11222333
Q ss_pred HhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
+.. ..++++++|+|.... .....++..+...+.|+++|+||+|+..
T Consensus 81 ~~~-~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 81 IIN-EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp HHH-HCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred Hhc-cCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 322 238999999998641 3334566666667899999999999853
No 53
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.71 E-value=1.3e-17 Score=129.04 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=76.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..++|+++|.+|||||||+|+|++.. .....+..+.+.. .+...+..+.+|||||.... ..+...++.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~ 87 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVE-EIVINNTRFLMWDIGGQESL----------RSSWNTYYT 87 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTS-CEEEECCSSSSCE-EEEETTEEEEEEEESSSGGG----------TCGGGGGGT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCccCCcCceeeE-EEEECCEEEEEEECCCCHhH----------HHHHHHHhc
Confidence 45799999999999999999999884 3445555554432 22235678999999997431 111222232
Q ss_pred ccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~ 218 (237)
.+|++++|+|++...+... ..++..+. ..+.|+++|+||+|+...
T Consensus 88 ---~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 88 ---NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp ---TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 3899999999886533322 23333332 257899999999999753
No 54
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.71 E-value=4.3e-17 Score=126.97 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=74.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..++|+++|.+|||||||+|+|++........+..+.+.. .+...+..+.+|||||... +..+...++.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~ 89 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQPR----------FRSMWERYCR 89 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCSHH----------HHTTHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCCEEEEEEECCCCHh----------HHHHHHHHHc
Confidence 3479999999999999999999987421122222232222 2333477899999999632 2233344443
Q ss_pred ccccccEEEEEEeCCCCCChhH-HHHHHHH-Hh---cCCcEEEEEecCCCCCh
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~---~~~piilv~NK~Dl~~~ 218 (237)
. +|++++|+|++....... ..++..+ .. .+.|+++|+||+|+...
T Consensus 90 ~---~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 90 G---VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp T---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 3 899999999875422211 2233333 22 47899999999999754
No 55
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=128.58 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccc-eeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~-~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
..++|+++|.+|||||||+|+|++... .....+..+.+.. .+...+..+.+|||||.... ..+...++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~ 88 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE-KFKSSSLSFTVFDMSGQGRY----------RNLWEHYY 88 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE-EEECSSCEEEEEEECCSTTT----------GGGGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE-EEEECCEEEEEEECCCCHHH----------HHHHHHHH
Confidence 457999999999999999999998741 1222222222211 22223678999999996541 11122223
Q ss_pred hccccccEEEEEEeCCCCC--ChhHHHHHHHHHh-----cCCcEEEEEecCCCCCh
Q 026538 170 STRVSLKRVCLLIDTKWGV--KPRDHELISLMER-----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~ 218 (237)
. .+|++++|+|++... ......+...+.. .+.|+++|+||+|+...
T Consensus 89 ~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 89 K---EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp G---GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred h---cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 2 389999999987542 1111222233332 47899999999999754
No 56
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.70 E-value=4.6e-17 Score=127.48 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=70.2
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
...++|+++|.+|||||||+|+|++... ....+..+... ..+...+..+.+|||||.... ..+...++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 94 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYKNICFTVWDVGGQDKI----------RPLWRHYF 94 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCC-EEEEEETTEEE-EEEEETTEEEEEEECC---------------CTTHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCc-cccCCcCceeE-EEEEECCEEEEEEECCCCHhH----------HHHHHHHh
Confidence 3457999999999999999999998732 22222222111 122234678999999997431 11222333
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~ 218 (237)
.. +|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 95 ~~---~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 95 QN---TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HT---CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred cc---CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 33 999999999876422221 233333322 37899999999999754
No 57
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.70 E-value=1.2e-16 Score=142.04 Aligned_cols=129 Identities=24% Similarity=0.349 Sum_probs=88.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccc---e--eeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWG---V--VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~---~--~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (237)
.++|+++|.+++|||||+|+|++... . ......+|+|.+.. +...+..+.+|||||+. .
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------------~ 85 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------------D 85 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------------H
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------------H
Confidence 46999999999999999999998731 1 12234556676653 22246689999999962 1
Q ss_pred HHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
+..........+|++++|+|+..+...+..+.+..+...++|+++|+||+|+.+++......+++.+.+.
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~ 155 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQ 155 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHh
Confidence 2223333334499999999999888888888888888889999999999999987666666666665543
No 58
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=1.7e-17 Score=126.19 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=72.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||.... ......++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~ 73 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPXYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh----------hhhhhhhh
Confidence 58999999999999999999987422223334444433333322 347899999996431 12233334
Q ss_pred hccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+.+.
T Consensus 74 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 74 RN---AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp TT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred cc---CcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 33 899999999876422211 233444432 37899999999998643
No 59
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.70 E-value=3.6e-17 Score=124.53 Aligned_cols=114 Identities=13% Similarity=0.073 Sum_probs=75.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||+... ......+
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~ 75 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMY 75 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh----------hcccHhh
Confidence 369999999999999999999988422333455555544433322 357899999997431 1222333
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
+.. +|++++|+|++...+... ..++..+.. ...|+++|+||+|+.+.
T Consensus 76 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 76 YRG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred CcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 333 899999999876432222 344444443 36789999999999753
No 60
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.70 E-value=8.2e-17 Score=124.85 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=74.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..++|+++|.+|||||||+|+|++.. .....+..+.+.. .+...+..+.+|||||... +......++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~----------~~~~~~~~~- 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK-TLEHRGFKLNIWDVGGQKS----------LRSYWRNYF- 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE-EEEETTEEEEEEEECCSHH----------HHTTGGGGC-
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE-EEEECCEEEEEEECCCCHh----------HHHHHHHHh-
Confidence 45799999999999999999999874 3333333343322 2223477899999999632 112222222
Q ss_pred ccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCChH
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~~ 219 (237)
..+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+....
T Consensus 84 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 84 --ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp --TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 34899999999876432222 233333322 478999999999997643
No 61
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.70 E-value=9.2e-17 Score=122.95 Aligned_cols=115 Identities=16% Similarity=0.064 Sum_probs=70.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|.+|||||||+|+|++. ......+.+|++........ + ..+.+|||||..... +..+...+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 74 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------KSWSQESC 74 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHHT
T ss_pred EEEEEEECCCCccHHHHHHHHhcC-CCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc--------hhhhHHhh
Confidence 469999999999999999999988 33444555666544333222 2 368899999975310 11222333
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc----CCcEEEEEecCCCCCh
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFP 218 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~----~~piilv~NK~Dl~~~ 218 (237)
+.. +|++++|+|.+...+... ..++..+... +.|+++|+||+|+.+.
T Consensus 75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 75 LQG---GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp TTS---CSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred ccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 333 899999999875322111 2344444442 7899999999999753
No 62
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.70 E-value=7.3e-17 Score=126.17 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|+|||||+|+|++........+..+.+........ + ..+.+|||||... .. .+...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~----~~~~~ 94 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER------FN----SITSA 94 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG------GH----HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH------HH----HHHHH
Confidence 4578999999999999999999987422222233333333332222 2 4689999999643 12 22333
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 95 ~~~~---~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 95 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 3333 899999999876432222 233344433 3789999999999864
No 63
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.70 E-value=7.8e-17 Score=123.69 Aligned_cols=114 Identities=14% Similarity=0.110 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|+|||||+|+|++........+..+.+........ + ..+.+|||||... +......
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER----------FRSLRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG----------GHHHHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhHHH
Confidence 4579999999999999999999987421222222332222222222 2 4799999999643 1222333
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-------cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~piilv~NK~Dl~~ 217 (237)
++. .+|++++|+|.....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 76 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 76 FYR---GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp GGT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred HHh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 333 3899999999875422211 233333322 4689999999999863
No 64
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.70 E-value=7.7e-17 Score=124.88 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=69.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.++|+++|.+|||||||+|+|++.. .....++++.+. .....+ ..+.+|||||.... ..+..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 70 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMRD 70 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH----------HHHHH
Confidence 4699999999999999999999873 233333333322 122223 34778999996531 11222
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCCh
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~~ 218 (237)
.++.. +|++++|+|.....+... ..++..+.. .+.|+++|+||+|+...
T Consensus 71 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 71 QYMRT---GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc
Confidence 33333 899999999875322111 233333332 37899999999999743
No 65
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=5e-17 Score=128.64 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=70.6
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE--EEEEE-cC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~--~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
...++|+++|.+|||||||+|+|++... .....+.++.+ ..... .+ ..+.+|||||.... ...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~ 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF----------RTI 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC--CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG----------TCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHH
Confidence 3567999999999999999999998742 22222333322 22222 23 57899999996431 111
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCC
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTV 216 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~ 216 (237)
...++.. +|++++|+|+........ ..++..+.. .+.|+++|+||+|+.
T Consensus 86 ~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 86 TTAYYRG---AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp CHHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred HHHHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 2233332 899999999875322111 234444433 368999999999985
No 66
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=125.57 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=71.9
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
...++|+++|.+|||||||+|+|++.. ......+++.+. .+...+ ..+.+|||||.... ..+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~ 78 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAI 78 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC---CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----------HHH
Confidence 456799999999999999999999874 223333332221 222222 36899999997541 122
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
...++.. +|++++|+|+....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 79 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 79 RDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred HHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 2333333 899999999875321111 233333332 3789999999999965
No 67
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.69 E-value=1.5e-16 Score=125.14 Aligned_cols=114 Identities=17% Similarity=0.132 Sum_probs=74.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||+.. +..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 76 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER----------YRTITTA 76 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hcchHHH
Confidence 3479999999999999999999987422222333344443332222 35789999999743 1223333
Q ss_pred HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++. .+|++++|+|+..+.+.. ...++..+.. .+.|+++|+||+|+..
T Consensus 77 ~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 77 YYR---GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp TGG---GCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred hhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 333 389999999987542211 1234444443 3789999999999975
No 68
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.69 E-value=1.2e-16 Score=120.93 Aligned_cols=112 Identities=13% Similarity=0.018 Sum_probs=68.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.+|+++|++|+|||||+|+|++........+..+.......... ...+.+|||||.... ..+...++.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~~~~~ 73 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRDLYIK 73 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHHhc
Confidence 58999999999999999999987321111111111111112222 234899999996541 122223333
Q ss_pred ccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~ 217 (237)
. +|++++|+|.....+... ..++..+. ..+.|+++|+||+|+.+
T Consensus 74 ~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 74 N---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp H---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred c---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 3 899999999875322111 22222222 24799999999999864
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.69 E-value=1.6e-16 Score=120.08 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=68.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
++|+++|.+|+|||||+|+|++... .....+++.+ ..+... ...+.+|||||.... . .+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---~-------~~~~~ 70 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF---VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY---S-------AMRDQ 70 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSC---C-------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC---ccccCCccceEEEEEEEECCEEEEEEEEECCCchhh---h-------HHHHH
Confidence 5899999999999999999998732 2222222211 112222 345789999997541 1 12222
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|+....+... ..++..+.. .+.|+++|+||+|+.+
T Consensus 71 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 71 YMRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 3332 899999999875322111 233333332 2799999999999875
No 70
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.69 E-value=3.3e-17 Score=124.74 Aligned_cols=111 Identities=18% Similarity=0.175 Sum_probs=68.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.++|+++|.+|+|||||+|+|++... .....+.++.+. ..... + ..+.+|||||..... ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~ 70 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR----------TITT 70 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC--CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS----------CCCH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC--CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh----------hhHH
Confidence 36899999999999999999998742 122222222222 22222 2 468999999964311 1122
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
.++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 71 AYYRG---AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HHHTT---EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 23332 899999999875422111 234444433 3789999999999843
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.69 E-value=8.7e-17 Score=126.36 Aligned_cols=114 Identities=25% Similarity=0.244 Sum_probs=68.4
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
...++|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||.... . ....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~----~~~~ 95 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF------R----SIAK 95 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC------H----HHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch------h----hhHH
Confidence 45679999999999999999999987422223333343333222222 346899999996531 1 2223
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTV 216 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~ 216 (237)
.++.. +|++++|+|+....+... ..++..+.. .+.|+++|+||+|+.
T Consensus 96 ~~~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 96 SYFRK---ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred HHHhh---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 33333 899999999875422222 334444443 368999999999985
No 72
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.69 E-value=4.9e-17 Score=126.59 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=74.4
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
+..++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||...... ...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~ 89 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT----------ITT 89 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC----------SGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh----------hHH
Confidence 34579999999999999999999987422222333444443332222 35789999999654211 111
Q ss_pred HHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
.++. .+|++++|+|++...+.. ...++..+.. .+.|+++|+||+|+..
T Consensus 90 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 90 AYYR---GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp GGGT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred Hhcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 2222 389999999987532221 1345555544 3789999999999964
No 73
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.69 E-value=1.6e-17 Score=144.95 Aligned_cols=121 Identities=28% Similarity=0.299 Sum_probs=79.8
Q ss_pred CCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE---EcCC-eEEEEeCCCCCCcccc--hHHHHHH
Q 026538 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGT-KLCLVDLPGYGFAYAK--EEVKDAW 161 (237)
Q Consensus 88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~-~~~liDTpG~~~~~~~--~~~~~~~ 161 (237)
+....++|+++|.+|+|||||+|+|++. ....++..+++|.+.... ..+. .+.+|||||+.+.... ..+..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~-- 106 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK-- 106 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH--
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH--
Confidence 3456689999999999999999999998 445667788887765332 2233 8999999998653211 11111
Q ss_pred HHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
...++. .+|++++|+|+ +.......++..+...++|+++|+||+|+....
T Consensus 107 ---~~~~l~---~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 107 ---ARRVFY---RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp ---HHHHHT---SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred ---HHHHHh---cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 122333 39999999998 566778889999988899999999999997544
No 74
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.69 E-value=1.2e-16 Score=123.03 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=72.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|+|||||+|+|++...........+.+........ ...+.+|||||.... ......
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 80 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----------HSLAPM 80 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG----------GGGTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh----------hhhhHH
Confidence 3469999999999999999999987421111222233332222222 347999999996431 112223
Q ss_pred HHhccccccEEEEEEeCCCCCC-hhHHHHHHHHHhc---CCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS---QTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~-~~~~~~~~~l~~~---~~piilv~NK~Dl~~~ 218 (237)
++.. +|++++|+|++...+ .....++..+... +.|+++|+||+|+...
T Consensus 81 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 81 YYRG---AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp HHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 3333 899999999875432 1223444444432 6889999999999653
No 75
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.69 E-value=2.2e-16 Score=137.48 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=85.2
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--------------EE--------EEcCCeEEEEeCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--------------NF--------FKLGTKLCLVDLPG 147 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--------------~~--------~~~~~~~~liDTpG 147 (237)
...++|+++|.+|+|||||+|+|++.. .........++... .. ......+.+|||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 456799999999999999999999852 11100000000000 00 00114689999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCC-cEEEEEecCCCCChHHHHHHH
Q 026538 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRA 225 (237)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~~~~~~~~ 225 (237)
+.+ +......++ ..+|++++|+|+..+. ..+..+++..+...+. |+++|+||+|+.+.++.....
T Consensus 85 h~~----------~~~~~~~~~---~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 85 HEV----------LMATMLSGA---ALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp CGG----------GHHHHHHHH---TTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred cHH----------HHHHHHHHH---hhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHH
Confidence 743 111222222 3399999999999876 6667777777766554 899999999999887776666
Q ss_pred HHHHHHH
Q 026538 226 MQIEEVI 232 (237)
Q Consensus 226 ~~l~~~l 232 (237)
+++.+.+
T Consensus 152 ~~i~~~l 158 (403)
T 3sjy_A 152 RQIKQFT 158 (403)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 76
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.69 E-value=1.4e-16 Score=122.23 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=73.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||.... ......
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~ 83 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRS 83 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh----------hhhHHH
Confidence 4579999999999999999999987422222233333333333222 347899999996431 122333
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|+....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 84 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 84 YYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp HHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred Hhcc---CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 3333 899999999876422222 234443432 4789999999999964
No 77
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.68 E-value=3.3e-16 Score=121.63 Aligned_cols=114 Identities=19% Similarity=0.126 Sum_probs=72.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-EEEEE-cC-----------CeEEEEeCCCCCCcccchHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFK-LG-----------TKLCLVDLPGYGFAYAKEEV 157 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~~~~~-~~-----------~~~~liDTpG~~~~~~~~~~ 157 (237)
..++|+++|.+|||||||+|+|++........+..+.+.. ..... .+ ..+.+|||||...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------- 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------
Confidence 4579999999999999999999987321111222222211 11222 22 3799999999743
Q ss_pred HHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 158 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
+......++. .+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 83 ---~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 83 ---FRSLTTAFFR---DAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp ---GHHHHHHTTT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred ---HHHHHHHHHc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1223333333 3999999999876432222 344444443 4789999999999864
No 78
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.68 E-value=2.2e-17 Score=128.48 Aligned_cols=113 Identities=17% Similarity=0.116 Sum_probs=73.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..++|+++|.+|||||||+|+|++.. .....+..+.+.. .+...+..+.+|||||....... ...++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~----------~~~~~- 87 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGD-VVTTVPTVGVNLE-TLQYKNISFEVWDLGGQTGVRPY----------WRCYF- 87 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSC-CEEECSSTTCCEE-EEEETTEEEEEEEECCSSSSCCC----------CSSSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC-CCCcCCCCceEEE-EEEECCEEEEEEECCCCHhHHHH----------HHHHh-
Confidence 35799999999999999999998773 2333333333222 22234678999999997542111 11112
Q ss_pred ccccccEEEEEEeCCCCCChhH-HHHHHHH-Hh---cCCcEEEEEecCCCCCh
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~---~~~piilv~NK~Dl~~~ 218 (237)
..+|++++|+|++++.+... ..++..+ .. .+.|+++|+||+|+...
T Consensus 88 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 88 --SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp --TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred --hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 23899999999876533222 2233333 32 37899999999999765
No 79
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.68 E-value=1.9e-16 Score=120.03 Aligned_cols=110 Identities=14% Similarity=0.090 Sum_probs=68.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce---EEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t---~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.++|+++|.+|+|||||+|+|++... .....+++ ....+...+ ..+.+|||||.... ..+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~ 70 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF---VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc---CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh----------HHHHH
Confidence 36899999999999999999998742 22222222 211222222 46899999996431 12233
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
.++.. +|++++|+|+....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 71 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 33333 899999999875322111 233333332 3789999999999864
No 80
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=123.93 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=73.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|||||||+|+|++.. ......+.++.+. ..... + ..+.+|||||.... ..+.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 82 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTIT 82 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------CTTH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh----------hhhH
Confidence 45799999999999999999999874 2233334343333 22222 3 46899999996431 1122
Q ss_pred HHHHhccccccEEEEEEeCCCCCCh-hHHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
..++.. +|++++|+|+.+..+. ....++..+.. .+.|+++|+||+|+...
T Consensus 83 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 83 SSYYRG---AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHhh---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 333433 8999999998763221 11334444433 27899999999999754
No 81
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.68 E-value=6.3e-17 Score=124.85 Aligned_cols=114 Identities=20% Similarity=0.072 Sum_probs=68.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..++|+++|.+|+|||||+|+|++........+..+.+........+ ..+.+|||||...... +...+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~ 74 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----------FPQTY 74 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC----------CCGGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH----------HHHHH
Confidence 45799999999999999999999774222223333333322222223 4678999999754211 11122
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHH----HhcCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~piilv~NK~Dl~~ 217 (237)
+. .+|++++|+|.....+... ..++..+ ...+.|+++|+||+|+..
T Consensus 75 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 75 SI---DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp TT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred Hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 22 3899999999875321111 2233233 233789999999999864
No 82
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=2.9e-16 Score=122.83 Aligned_cols=114 Identities=14% Similarity=0.008 Sum_probs=69.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..++|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||.... . .+...+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~----~~~~~~ 76 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF------P----AMQRLS 76 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC------H----HHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHh------H----HHHHHh
Confidence 4579999999999999999999987321111122222221112112 346899999996531 1 222233
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-----cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 77 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 77 ISK---GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 333 899999999875321111 223333322 2689999999999975
No 83
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1e-16 Score=125.30 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=76.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||.... ......
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 91 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF----------HSLAPM 91 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------GGGTHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------HhhhHH
Confidence 3479999999999999999999988422344556666655443332 356899999996431 112223
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+.+
T Consensus 92 ~~~~---~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 92 YYRG---SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp HHTT---CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 3333 899999999876432221 334444443 2689999999999864
No 84
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.68 E-value=2.7e-16 Score=137.20 Aligned_cols=130 Identities=20% Similarity=0.292 Sum_probs=88.3
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccc-eeeccCCCCceEEEEEEE-------------c-------------CCeEEE
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK-------------L-------------GTKLCL 142 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~-~~~~~~~~g~t~~~~~~~-------------~-------------~~~~~l 142 (237)
...++|+++|++++|||||+++|++... .......+|.|.+..+.. . ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 3457999999999999999999997521 011122345554432211 0 146999
Q ss_pred EeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCC-cEEEEEecCCCCChHH
Q 026538 143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPID 220 (237)
Q Consensus 143 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~~~ 220 (237)
|||||+. .+...+......+|++++|+|+..+. ..+..+.+..+...+. |+++|+||+|+.+..+
T Consensus 88 iDtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 88 IDAPGHE-------------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp EECSSHH-------------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred EECCChH-------------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH
Confidence 9999962 23445555555689999999999876 6667666666665554 7999999999988765
Q ss_pred HHHHHHHHHHHH
Q 026538 221 VARRAMQIEEVI 232 (237)
Q Consensus 221 ~~~~~~~l~~~l 232 (237)
.....+++++.+
T Consensus 155 ~~~~~~~i~~~l 166 (410)
T 1kk1_A 155 ALENYRQIKEFI 166 (410)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 85
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.68 E-value=5.2e-16 Score=136.35 Aligned_cols=129 Identities=17% Similarity=0.224 Sum_probs=83.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccce---------eeccCC----------------------CCceEEEEEE---Ec
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDK----------------------PGLTQTINFF---KL 136 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~---------~~~~~~----------------------~g~t~~~~~~---~~ 136 (237)
..++|+++|.+|+|||||+|+|++.... ...+.. .|.|.+..+. ..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 3469999999999999999999875310 011111 2334333222 23
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCC-cEEEEEecCCC
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT 215 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-piilv~NK~Dl 215 (237)
+..+.+|||||+.+ +......++. .+|++++|+|+..+...+..+++..+...++ |+++|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~----------f~~~~~~~~~---~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQ----------YTRNMATGAS---TCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGG----------GHHHHHHHHT---TCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChHH----------HHHHHHHHHh---hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence 56799999999753 1112222333 3999999999998888888777777777776 59999999999
Q ss_pred CC--hHHHHHHHHHHHHHH
Q 026538 216 VF--PIDVARRAMQIEEVI 232 (237)
Q Consensus 216 ~~--~~~~~~~~~~l~~~l 232 (237)
.+ ++......+++.+.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~~ 188 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFA 188 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHH
Confidence 86 333334444444443
No 86
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.68 E-value=7.7e-17 Score=122.45 Aligned_cols=114 Identities=17% Similarity=0.114 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||.... ..+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF----------DAITKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT----------TCCCHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH----------HHHHHH
Confidence 3469999999999999999999987321111222222222222221 347899999996431 111223
Q ss_pred HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|++...+.. ...++..+.. .+.|+++|+||+|+.+
T Consensus 74 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 74 YYRG---AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 3333 89999999987532111 1234444433 3789999999999865
No 87
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.68 E-value=2.4e-16 Score=123.30 Aligned_cols=112 Identities=20% Similarity=0.155 Sum_probs=69.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--------------------------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G-------------------------------- 137 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~-------------------------------- 137 (237)
..++|+++|.+|+|||||+|+|++........+..+.......... +
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4579999999999999999999988421111111121111111111 1
Q ss_pred -------CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-cCCcEEE
Q 026538 138 -------TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQTKYQV 208 (237)
Q Consensus 138 -------~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-~~~piil 208 (237)
..+.+|||||.... ......++.. +|++++|+|++.+.+... ..++..+.. .+.|+++
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~~---~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piil 152 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERY----------ASIVPLYYRG---ATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIIL 152 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGC----------TTTHHHHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred ccCccceeEEEEEECCCcHHH----------HHHHHHHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 57899999995431 1122333333 899999999886532222 234444443 4689999
Q ss_pred EEecCCC
Q 026538 209 VLTKTDT 215 (237)
Q Consensus 209 v~NK~Dl 215 (237)
|+||+|+
T Consensus 153 v~NK~D~ 159 (208)
T 3clv_A 153 VANKIDK 159 (208)
T ss_dssp EEECTTC
T ss_pred EEECCCc
Confidence 9999994
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.68 E-value=1.6e-16 Score=124.18 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=73.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
..+|+++|++|||||||+|+|++.. .....+..+.+.. .+...+..+.+|||||..... .+...++.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~- 89 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR-LATLQPTWHPTSE-ELAIGNIKFTTFDLGGHIQAR----------RLWKDYFP- 89 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC-CCCCCCCCSCEEE-EEEETTEEEEEEECCCSGGGT----------TSGGGGCT-
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC-CCccccCCCCCeE-EEEECCEEEEEEECCCCHHHH----------HHHHHHHh-
Confidence 3699999999999999999999873 3344444444432 233346789999999975311 11122222
Q ss_pred cccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538 172 RVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~ 217 (237)
.+|++++|+|++.+.+... ..++..+. ..+.|+++|+||+|+..
T Consensus 90 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 90 --EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp --TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred --cCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 3899999999886432221 23333332 24789999999999975
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.68 E-value=6.8e-17 Score=127.14 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=69.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
..+|+++|++|||||||+|+|.+.. .....+..+.+.. .+...+..+.+|||||.... ..+...|+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~- 91 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSE-ELTIAGMTFTTFDLGGHIQA----------RRVWKNYLP- 91 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-EEEETTEEEEEEEECC--------------CCGGGGGGG-
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC-CCccCCCCCceeE-EEEECCEEEEEEECCCcHhh----------HHHHHHHHh-
Confidence 3689999999999999999999873 3333344444322 22334678999999996431 111222333
Q ss_pred cccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538 172 RVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~ 217 (237)
.+|++++|+|+.+..+... ..++..+. ..++|+++|+||+|+..
T Consensus 92 --~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 92 --AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp --GCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 3899999999876422221 23333332 24789999999999974
No 90
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.9e-16 Score=120.62 Aligned_cols=114 Identities=14% Similarity=-0.039 Sum_probs=69.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.++|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||.... . .+...++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~------~----~~~~~~~ 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF------P----AMQRLSI 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC------H----HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhh------H----HHHHHhc
Confidence 368999999999999999999987321111111122211111111 346899999997541 1 2222333
Q ss_pred hccccccEEEEEEeCCCCCChh-HHHHHHHHHh-----cCCcEEEEEecCCCCCh
Q 026538 170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER-----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~-----~~~piilv~NK~Dl~~~ 218 (237)
.. +|++++|+|++...... ...++..+.. .+.|+++|+||+|+.+.
T Consensus 73 ~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 73 SK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp HH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 33 89999999987532111 1234444433 36899999999998643
No 91
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=2.7e-16 Score=120.98 Aligned_cols=114 Identities=15% Similarity=0.199 Sum_probs=70.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|+|||||+|+|++.. .......+.++.+.. .... + ..+.+|||||... +....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~ 77 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSVT 77 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH
Confidence 34799999999999999999999873 222223333333322 2122 2 3789999999643 12222
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
..++ ..+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 78 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 78 HAYY---RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp -CCG---GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 2333 33899999999876422221 234444433 47899999999999753
No 92
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.68 E-value=2.2e-16 Score=122.92 Aligned_cols=115 Identities=19% Similarity=0.163 Sum_probs=72.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHH-HHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWE-ELVK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~-~~~~ 166 (237)
..++|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||... +. .+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 88 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER----------FRKSMVQ 88 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH----------HHTTTHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhhH
Confidence 4579999999999999999999987421222223333322222222 24799999999532 12 2334
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~ 218 (237)
.++.. +|++++|+|++...+... ..++..+. ..+.|+++|+||+|+...
T Consensus 89 ~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 89 HYYRN---VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred HHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 44443 899999999875322111 23333333 246899999999999643
No 93
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.68 E-value=2.8e-16 Score=122.24 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.++|+++|.+|||||||+|+|++... .....+++.+. .+...+ ..+.+|||||... +..+..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 87 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRD 87 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC---ccccCCccceEEEEEEEECCEEEEEEEEECCChHH----------HHHHHH
Confidence 36999999999999999999998732 22222232221 122222 4589999999642 122333
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
.++.. +|++++|+|.....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 88 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 88 QYMRT---GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp --CTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HhhCc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 34333 899999999875422222 233333332 3689999999999875
No 94
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=9.2e-17 Score=124.04 Aligned_cols=113 Identities=20% Similarity=0.164 Sum_probs=72.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..++|+++|.+|||||||+|+|++. ......+..+.+.. .+...+..+.+|||||..... .....++
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~- 83 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVE-TLSYKNLKLNVWDLGGQTSIR----------PYWRCYY- 83 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS-EEEEECSSTTCCEE-EEEETTEEEEEEEEC----CC----------TTGGGTT-
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC-CcCccCCcCccceE-EEEECCEEEEEEECCCCHhHH----------HHHHHHh-
Confidence 4579999999999999999999977 33444555554332 222246789999999975311 1111222
Q ss_pred ccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCCh
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~ 218 (237)
..+|++++|+|++...+... ..++..+. ..+.|+++|+||+|+...
T Consensus 84 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 84 --ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp --TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 23899999999876533222 23333333 247899999999999754
No 95
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.67 E-value=6.5e-16 Score=134.27 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=87.2
Q ss_pred CEEEEecCCCCchhhHHHHHhccc---ceee-----------ccCCCCceEEEEEE---EcCCeEEEEeCCCCCCcccch
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW---GVVR-----------TSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKE 155 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~---~~~~-----------~~~~~g~t~~~~~~---~~~~~~~liDTpG~~~~~~~~ 155 (237)
.+|+++|++|+|||||+++|++.. .... .....|.|.+.... ..+..+.+|||||+.+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~----- 78 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD----- 78 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH-----
Confidence 589999999999999999999741 0000 01134566654332 2357899999999631
Q ss_pred HHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCCh-HHHHHHHHHHHHHH
Q 026538 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFP-IDVARRAMQIEEVI 232 (237)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~-~~~~~~~~~l~~~l 232 (237)
+..........+|++++|+|+..+...+..+.+..+...++| +++|+||+|+... +......+++++.+
T Consensus 79 --------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 79 --------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (397)
T ss_dssp --------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 222233334459999999999988888888888888778899 7899999999853 32233334444433
No 96
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.67 E-value=3.3e-16 Score=139.40 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=83.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccce-----------------------------eeccCCCCceEEEE---EEEcCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTIN---FFKLGT 138 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~-----------------------------~~~~~~~g~t~~~~---~~~~~~ 138 (237)
...+|+++|.+|+|||||+|+|++.... ......+|+|.+.. +...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 3469999999999999999999865110 11122345565442 233467
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-------CChhHHHHHHHHHhcCC-cEEEEE
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-piilv~ 210 (237)
.+.||||||+.+ +......++. .+|++++|+|+..+ +.....+.+..+...++ |+++|+
T Consensus 112 ~~~iiDTPG~~~----------f~~~~~~~~~---~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi 178 (483)
T 3p26_A 112 NFTIVDAPGHRD----------FVPNAIMGIS---QADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 178 (483)
T ss_dssp EEEEECCCCCGG----------GHHHHHHHHT---TCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCcHH----------HHHHHHHhhh---hCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence 899999999853 1122223333 39999999999876 44566666666666664 599999
Q ss_pred ecCCCCC--hHHHHHHHHHHHHHH
Q 026538 211 TKTDTVF--PIDVARRAMQIEEVI 232 (237)
Q Consensus 211 NK~Dl~~--~~~~~~~~~~l~~~l 232 (237)
||+|+.+ .....+..+.+.+.+
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l 202 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYL 202 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred ECcCcccchHHHHHHHHHHHHHHH
Confidence 9999976 333344444444443
No 97
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.67 E-value=4.6e-17 Score=129.59 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=73.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C---CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
..++|+++|.+|||||||+|+|++...........+.+........ + ..+.+|||||...... +..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~ 79 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV----------LKD 79 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC----------CCH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch----------HHH
Confidence 4579999999999999999999976433333444444443333322 2 4689999999653211 112
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCCh
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~~ 218 (237)
.++.. +|++++|+|++.+.+... ..++..+. ..+.|+++|+||+|+...
T Consensus 80 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 80 VYYIG---ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred HHhhc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 22322 899999999886433222 23334433 236899999999999754
No 98
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.67 E-value=1.7e-16 Score=120.37 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=68.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-EE-EEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~~-~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|||||||+|+|++... .....+++.. .. .... ...+.+|||||..... .+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~ 70 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRDL 70 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC---CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----------HHHHH
Confidence 5899999999999999999998731 2222222221 11 1111 3458899999975421 12223
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|+....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 71 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 71 YMKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 3332 899999999875321111 233333332 3789999999999964
No 99
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=125.15 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=64.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..++|+++|.+|||||||+|+|++........+..+.......... ...+.+|||||... +..+...+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~ 102 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD----------YDRLRPLF 102 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC-----------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchh----------hhHHHHHH
Confidence 3479999999999999999999987321111111111111112212 23689999999643 12223333
Q ss_pred HhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCChHHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~~~~~ 221 (237)
+.. +|++++|+|++...+... ..++..+.. .++|+++|+||+|+......
T Consensus 103 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 156 (214)
T 2j1l_A 103 YPD---ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSL 156 (214)
T ss_dssp --C---EEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHH
T ss_pred hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchh
Confidence 333 899999999875422222 134444443 26899999999999865543
No 100
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.67 E-value=2.5e-16 Score=121.66 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=68.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce-EE-EE-EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QT-IN-FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t-~~-~~-~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|||||||+|+|++.. ......+++ .. .. ....+ ..+.+|||||..... .+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~ 83 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI---FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS----------AMR 83 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC----------SSH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH----------HHH
Confidence 45799999999999999999999873 222222222 11 11 22222 346679999964311 112
Q ss_pred HHHHhccccccEEEEEEeCCCCCChh-HHHHHHHH----HhcCCcEEEEEecCCCCC
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLM----ERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l----~~~~~piilv~NK~Dl~~ 217 (237)
..++.. +|++++|+|.....+.. ...++..+ ...+.|+++|+||+|+..
T Consensus 84 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 84 EQYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred HHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 222322 89999999987532111 12333333 235789999999999864
No 101
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.67 E-value=4.2e-16 Score=121.49 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=71.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccC-------CCCceEEEEEEEc--------CCeEEEEeCCCCCCcccch
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAKE 155 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-------~~g~t~~~~~~~~--------~~~~~liDTpG~~~~~~~~ 155 (237)
..++|+++|.+|||||||++.+.+.. ...... ....|....+... ...+.+|||||....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---- 87 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY---- 87 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH----
Confidence 45799999999999999999888763 111111 1122333333221 235899999996531
Q ss_pred HHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHH----HHHHHHh-----cCCcEEEEEecCCCCCh
Q 026538 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLMER-----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~----~~~~l~~-----~~~piilv~NK~Dl~~~ 218 (237)
..+...++.. +|++++|+|++.+....... +..++.. .+.|+++|+||+|+...
T Consensus 88 ------~~~~~~~~~~---~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 88 ------NASRKLILRG---VDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp ------SHHHHHHTTT---CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred ------HHHHHHHHhc---CCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence 1223334443 99999999988543333322 2233322 47899999999998654
No 102
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.67 E-value=1.5e-16 Score=122.26 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=71.0
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
...++|+++|.+|||||||+|+|++.. ......+++... .+...+ ..+.+|||||..... .+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~ 73 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG----------AM 73 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS----------CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc---CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhH----------HH
Confidence 355799999999999999999999883 233333333221 122222 468899999975421 11
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHH----HhcCCcEEEEEecCCCCC
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~piilv~NK~Dl~~ 217 (237)
...++.. +|++++|+|.....+... ..++..+ ...+.|+++|+||+|+..
T Consensus 74 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 74 REQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred HHHHHhh---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1222222 899999999875321111 2233232 234789999999999865
No 103
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.1e-16 Score=124.82 Aligned_cols=113 Identities=21% Similarity=0.163 Sum_probs=73.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||.... ..+...+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~ 84 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF----------RTLTPSY 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------CCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh----------hhhhHHH
Confidence 469999999999999999999987422222333344433332222 356899999996431 1122233
Q ss_pred HhccccccEEEEEEeCCCCCChh-HHHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|+....... ...++..+.. .++|+++|+||+|+..
T Consensus 85 ~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 85 YRG---AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HTT---CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 333 89999999987542221 1344455543 3689999999999853
No 104
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.67 E-value=2.4e-16 Score=119.76 Aligned_cols=113 Identities=16% Similarity=0.093 Sum_probs=72.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|.+|+|||||+|+|++........+..+.+........ +..+.+|||||.... ......+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~ 75 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMY 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh----------hhhhHHh
Confidence 369999999999999999999987322222333444443332222 457899999996431 1122333
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 76 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 76 YRG---AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred ccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 333 899999999875422111 234444433 3689999999999864
No 105
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.4e-16 Score=141.35 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=87.4
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccC------------------------------CCCceEEE---EEEEc
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------------------------------KPGLTQTI---NFFKL 136 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~------------------------------~~g~t~~~---~~~~~ 136 (237)
...++|+++|.+|+|||||+|+|++... ..... .+|+|.+. .+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~-~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN-IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS-CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC-CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3567999999999999999999997631 11110 24666554 23334
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-------CChhHHHHHHHHHhcCCc-EEE
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQV 208 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~p-iil 208 (237)
+..+.||||||+.. +..........+|++++|+|+..+ +..+..+.+..+...++| +++
T Consensus 244 ~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 244 RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 67899999999853 333444455569999999999864 345566666666666765 999
Q ss_pred EEecCCCCC--hHHHHHHHHHHHHH
Q 026538 209 VLTKTDTVF--PIDVARRAMQIEEV 231 (237)
Q Consensus 209 v~NK~Dl~~--~~~~~~~~~~l~~~ 231 (237)
|+||+|+.+ .....+..+.+...
T Consensus 311 VvNKiDl~~~~~~~~~ei~~~l~~~ 335 (611)
T 3izq_1 311 AMNKMDNVDWSQQRFEEIKSKLLPY 335 (611)
T ss_dssp EEECTTTTTTCHHHHHHHHHHHHHH
T ss_pred EEecccccchhHHHHHHHHHHHHHH
Confidence 999999986 33333444444443
No 106
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.67 E-value=3.5e-16 Score=120.80 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=70.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|+|||||+|+|++.. ......+++.. ..+...+ ..+.+|||||.... . .+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~----~~~ 83 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY------A----AIR 83 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC---CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC------H----HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc------H----HHH
Confidence 34799999999999999999999874 22222222222 1222222 46899999997541 1 222
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
..++.. +|++++|+|+........ ..++..+.. .++|+++|+||+|+.+
T Consensus 84 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 84 DNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred HHHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 333333 899999999875322111 223333322 3789999999999864
No 107
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=123.93 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=73.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+|+|++...........+.+....... .+..+.+|||||+... ..+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 93 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY----------RAITSA 93 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT----------CTTHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh----------hhhhHH
Confidence 347999999999999999999998742111222223333222222 2456899999997542 112233
Q ss_pred HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|++...+.. ...++..+.. .+.|+++|+||+|+..
T Consensus 94 ~~~~---~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 94 YYRG---AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 3333 89999999987542211 1344444443 3689999999999864
No 108
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.67 E-value=2.9e-16 Score=140.81 Aligned_cols=128 Identities=21% Similarity=0.264 Sum_probs=89.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhccccee--------------eccC------CCCce---EEEEEEEcCCeEEEEeCCCC
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTSD------KPGLT---QTINFFKLGTKLCLVDLPGY 148 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~--------------~~~~------~~g~t---~~~~~~~~~~~~~liDTpG~ 148 (237)
.++|+|+|++|+|||||+|+|+...... ...+ .+|+| ....+...+..++||||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4699999999999999999997321100 0000 12222 22344455788999999998
Q ss_pred CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (237)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l 228 (237)
.+-. .....++ ..+|++++|+|+..+.......++..+...++|+++|+||+|+.... ..+.++.+
T Consensus 93 ~df~----------~~~~~~l---~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~-~~~~l~ei 158 (528)
T 3tr5_A 93 ADFT----------EDTYRTL---TAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP-SIELLDEI 158 (528)
T ss_dssp TTCC----------HHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC-HHHHHHHH
T ss_pred hhHH----------HHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc-HHHHHHHH
Confidence 6511 1122223 34999999999999999999889988888899999999999996543 33445666
Q ss_pred HHHHH
Q 026538 229 EEVIF 233 (237)
Q Consensus 229 ~~~l~ 233 (237)
++.++
T Consensus 159 ~~~l~ 163 (528)
T 3tr5_A 159 ESILR 163 (528)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 66554
No 109
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=9.8e-17 Score=126.90 Aligned_cols=115 Identities=11% Similarity=-0.009 Sum_probs=70.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
++|+++|.+|||||||+|+|++........+..+......+...+ ..+.+|||||..... .+...++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~- 94 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD----------RLRPLSY- 94 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCT----------TTGGGGC-
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH----------HHHHhhc-
Confidence 699999999999999999999874211111222222212222222 468999999975421 1111222
Q ss_pred ccccccEEEEEEeCCCCCC--hhHHHHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538 171 TRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l~~~--~~piilv~NK~Dl~~~~~ 220 (237)
..+|++++|+|+....+ .....++..+... +.|+++|+||+|+.....
T Consensus 95 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (207)
T 2fv8_A 95 --PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146 (207)
T ss_dssp --TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH
T ss_pred --CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc
Confidence 23899999999875321 2223455555543 799999999999976543
No 110
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1e-16 Score=125.25 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=72.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce---EEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t---~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|||||||+|+|++... .....+++ ....+...+ ..+.+|||||..... .+.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~ 83 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD----------RLR 83 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC---CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST----------TTG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh----------HHH
Confidence 446999999999999999999998732 22222222 111222223 468899999975421 111
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCChH
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~~~ 219 (237)
..++. .+|++++|+|+....+... ..++..+... ++|+++|+||+|+....
T Consensus 84 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 84 PLSYP---MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp GGGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred HHhcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc
Confidence 22222 3899999999875422222 2455555554 79999999999997643
No 111
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.66 E-value=1.4e-16 Score=124.34 Aligned_cols=114 Identities=17% Similarity=0.118 Sum_probs=71.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+|+|++...........+.+........ ...+.+|||||.... ..+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 89 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF----------RSITRS 89 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT----------SCCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh----------hhhHHH
Confidence 3469999999999999999999987421112222333333322222 247899999996431 111223
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 90 ~~~~---~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 90 YYRG---AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp HHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 3333 899999999875322221 334444443 3789999999999964
No 112
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.66 E-value=1.7e-16 Score=126.42 Aligned_cols=115 Identities=17% Similarity=0.085 Sum_probs=71.5
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEE--EcCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...++|+++|.+|||||||+|+|++........+..+.+...... .....+.+|||||.... ..+...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~ 94 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY----------DNVRPL 94 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG----------TTTGGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH----------HHHHHH
Confidence 355799999999999999999999874211111121211111111 12356899999996431 112222
Q ss_pred HHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~ 217 (237)
++. .+|++++|+|++...+... ..++..+... +.|+++|+||+|+..
T Consensus 95 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 95 CYS---DSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp GCT---TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred HcC---CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 333 3899999999886433222 3455555543 789999999999864
No 113
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.66 E-value=1.7e-15 Score=131.99 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=87.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc---c----eeec--c------CCCCceEEEE---EEEcCCeEEEEeCCCCCCcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW---G----VVRT--S------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY 152 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~---~----~~~~--~------~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~ 152 (237)
..++|+++|++|+|||||+|+|++.. . .... . ..+|.|.+.. +...+..+.+|||||+.+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence 44799999999999999999999731 0 0000 0 1234444432 333467899999999853
Q ss_pred cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCCh-HHHHHHHHHHHH
Q 026538 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFP-IDVARRAMQIEE 230 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~-~~~~~~~~~l~~ 230 (237)
+......++. .+|++++|+|+..+...+..+++..+...++| +++|+||+|+... +......+++++
T Consensus 88 --------f~~~~~~~~~---~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~ 156 (405)
T 2c78_A 88 --------YIKNMITGAA---QMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRD 156 (405)
T ss_dssp --------GHHHHHHHHT---TCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHH---HCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence 1112222332 39999999999988888888888888888899 8999999999853 323333334444
Q ss_pred HH
Q 026538 231 VI 232 (237)
Q Consensus 231 ~l 232 (237)
.+
T Consensus 157 ~l 158 (405)
T 2c78_A 157 LL 158 (405)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 114
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.66 E-value=1.1e-16 Score=123.08 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=66.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc----CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
..++|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||... +.....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 76 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER----------FQSLGV 76 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH----------hhhhhH
Confidence 4579999999999999999999987421111222222222222222 24689999999532 112222
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-------cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~piilv~NK~Dl~~ 217 (237)
.++ ..+|++++|+|+....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 77 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 77 AFY---RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp CCS---TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred HHh---hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 222 34899999999875422111 233333322 4689999999999963
No 115
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.66 E-value=5e-17 Score=138.37 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=80.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
.++|+|+|.+|||||||+|+|++.. ..+++.+++|.+... ... +..+.+|||||+.+.... +..+...
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~------~~~l~~~ 229 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ------GVGLGHQ 229 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC------TTTTHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccc------cchhHHH
Confidence 4689999999999999999999874 345677777765432 222 378999999997431110 1112233
Q ss_pred HHhccccccEEEEEEeCCC---CCChh-HHHHHHHHHh-----cCCcEEEEEecCCCCChH
Q 026538 168 YVSTRVSLKRVCLLIDTKW---GVKPR-DHELISLMER-----SQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~---~~~~~-~~~~~~~l~~-----~~~piilv~NK~Dl~~~~ 219 (237)
|+.....++++++|+|++. .-... ...+...+.. ..+|+++|+||+|+....
T Consensus 230 fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 230 FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA 290 (342)
T ss_dssp HHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred HHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence 3444444999999999875 21111 2344555554 368999999999998654
No 116
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.66 E-value=6.1e-17 Score=126.60 Aligned_cols=111 Identities=16% Similarity=0.019 Sum_probs=70.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|+|||||+|+|++.. ......+++.. ...... ...+.+|||||.... ..+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 88 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE---IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY----------DRLR 88 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC---CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH----------HHHh
Confidence 34799999999999999999999884 22222222221 122222 345699999996431 1112
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~ 217 (237)
..++. .+|++++|+|+....+... ..++..+... +.|+++|+||+|+..
T Consensus 89 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 89 PLSYA---DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp GGGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred Hhhcc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 22222 3899999999876422222 2344444443 689999999999864
No 117
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.66 E-value=2.4e-16 Score=120.96 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=70.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
++|+++|.+|+|||||+|+|++... .....+.++.+.. .... + ..+.+|||||.... ......
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~ 82 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RSLIPS 82 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGSHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH----------HHHHHH
Confidence 6999999999999999999998732 2222333333322 2222 2 47899999996431 111223
Q ss_pred HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
++.. +|++++|+|++...+.. ...++..+.. .+.|+++|+||+|+.+.
T Consensus 83 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 83 YIRD---STVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp HHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred HhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 3332 89999999987532211 1233333332 47899999999998643
No 118
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.66 E-value=2e-15 Score=116.07 Aligned_cols=107 Identities=9% Similarity=0.016 Sum_probs=68.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
...+|+++|.+|||||||+|+|++.. .....+..+......+... ...+.+|||||... . .|
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~----~~ 69 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----------A----KF 69 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSC-CCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----------H----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----------h----HH
Confidence 34699999999999999999999873 2323333332222222222 24688999999653 1 12
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHH---h---cCCcEEEEEecCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---R---SQTKYQVVLTKTDTV 216 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~---~~~piilv~NK~Dl~ 216 (237)
+.. +|++++|+|.+...+... ..+++++. . .++|+++|+||+|+.
T Consensus 70 ~~~---~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 70 SGW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred HHh---CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 222 899999999875422222 22222332 2 368999999999983
No 119
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.66 E-value=6.4e-16 Score=134.78 Aligned_cols=128 Identities=23% Similarity=0.293 Sum_probs=84.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccc-eeeccCCCCceEEEEEEE-------------c-------------CCeEEEE
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK-------------L-------------GTKLCLV 143 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~-~~~~~~~~g~t~~~~~~~-------------~-------------~~~~~li 143 (237)
..++|+++|..++|||||+++|++... .......+|.|.+..+.. . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 457999999999999999999997521 011122345555432211 0 1469999
Q ss_pred eCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-ChhHHHHHHHHHhcCC-cEEEEEecCCCCChHHH
Q 026538 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 144 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~Dl~~~~~~ 221 (237)
||||+. .+...+......+|++++|+|+..+. ..+..+.+..+...+. |+++|+||+|+.+..+.
T Consensus 87 DtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 87 DSPGHE-------------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp ECSSHH-------------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTT
T ss_pred ECCCHH-------------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHH
Confidence 999952 33445556666689999999999876 6666676666665554 79999999999865433
Q ss_pred HHHHHHHHHH
Q 026538 222 ARRAMQIEEV 231 (237)
Q Consensus 222 ~~~~~~l~~~ 231 (237)
....+++++.
T Consensus 154 ~~~~~~i~~~ 163 (408)
T 1s0u_A 154 EENYEQIKEF 163 (408)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 2333344433
No 120
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.66 E-value=8e-17 Score=123.84 Aligned_cols=113 Identities=19% Similarity=0.133 Sum_probs=71.9
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEE-cC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
...++|+++|.+|||||||+|+|++... .....++.+.+.. ... .+ ..+.+|||||..... .+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~ 74 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTF--SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR----------TI 74 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS----------SC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC--CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh----------hh
Confidence 3457999999999999999999998742 2333444444332 222 23 568999999954311 11
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF 217 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~~ 217 (237)
...++ ..+|++++|+|++.+.+... ..++..+... +.|+++|+||+|+.+
T Consensus 75 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 75 TSTYY---RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp CGGGG---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred HHHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 11222 23899999999876422222 2344444332 589999999999864
No 121
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.66 E-value=8.7e-17 Score=127.05 Aligned_cols=114 Identities=16% Similarity=0.023 Sum_probs=72.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|||||||+++|++.. ......+++.+.. ....+ ..+.+|||||.... ..+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~ 95 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRLR 95 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC---CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG----------TTTG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC---CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh----------HHHH
Confidence 45799999999999999999999873 2233333433321 12223 34569999997431 1112
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhHH--HHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~Dl~~~~~ 220 (237)
..++ ..+|++++|+|++...+.... .++..+... +.|+++|+||+|+.....
T Consensus 96 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 96 PLSY---PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp GGGC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred HHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 2222 238999999998864332222 455555554 799999999999976544
No 122
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.66 E-value=2.5e-16 Score=119.96 Aligned_cols=113 Identities=15% Similarity=0.117 Sum_probs=68.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|.+|+|||||+|+|++........+..+.+........ + ..+.+|||||... +..+...+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 75 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER----------FHALGPIY 75 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CCS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHh----------hhhhHHHH
Confidence 469999999999999999999987321111222222222222222 2 3688999999643 11122222
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
...+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+.+
T Consensus 76 ---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 76 ---YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp ---STTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred ---hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 234899999999875422111 233333332 4689999999999864
No 123
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.66 E-value=4.3e-15 Score=127.33 Aligned_cols=125 Identities=22% Similarity=0.244 Sum_probs=83.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccc--hHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK--EEVKDAWEEL 164 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~--~~~~~~~~~~ 164 (237)
...++|+++|.+|||||||+|+|++.. ..+...+++|.+..... .+..+.+|||||+.+.... .... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE---KQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH---HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH---HHH
Confidence 466899999999999999999999984 44566677776654432 3567999999998653211 1111 111
Q ss_pred HHHHHhccccccEEEEEEeCCCCC--ChhH-HHHHHHHHh-c-CCcEEEEEecCCCCChHHHH
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGV--KPRD-HELISLMER-S-QTKYQVVLTKTDTVFPIDVA 222 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~--~~~~-~~~~~~l~~-~-~~piilv~NK~Dl~~~~~~~ 222 (237)
... ....+|.+++|+|++... .... ..++..+.. . +.|+++|+||+|+....+..
T Consensus 240 ~~~---~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~ 299 (357)
T 2e87_A 240 ILA---LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIK 299 (357)
T ss_dssp HHG---GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHH
T ss_pred HHH---HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHH
Confidence 111 112389999999976532 3222 345555543 2 79999999999998766543
No 124
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.66 E-value=1.4e-16 Score=123.02 Aligned_cols=115 Identities=15% Similarity=-0.047 Sum_probs=71.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.++|+++|.+|+|||||+++|++........+..+.......... ...+.+|||||.... ..+...++
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 74 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLRPLSY 74 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTGGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH----------HHHHHHhc
Confidence 468999999999999999999976321111111122211122222 345779999997431 11111222
Q ss_pred hccccccEEEEEEeCCCCCChhHH--HHHHHHHhc--CCcEEEEEecCCCCChH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~Dl~~~~ 219 (237)
..+|++++|+|++.+.+.... .++..+... +.|+++|+||+|+.+..
T Consensus 75 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 75 ---PQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp ---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred ---cCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence 238999999998764222222 355555543 78999999999987543
No 125
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.65 E-value=2.7e-16 Score=121.71 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=71.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|||||||+|+|++... .....+..+.+. ..... + ..+.+|||||... +....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~ 76 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKF--KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER----------FRSVT 76 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH
Confidence 347999999999999999999998742 222233333332 22222 2 4789999999643 12223
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~ 217 (237)
..++. .+|++++|+|++...+... ..++..+. ..+.|+++|+||+|+..
T Consensus 77 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 77 RSYYR---GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp HTTST---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 33333 3999999999876322211 23333333 34789999999999863
No 126
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=3.7e-16 Score=135.54 Aligned_cols=87 Identities=22% Similarity=0.158 Sum_probs=46.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE------------------------c---CCeEEEEeC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------L---GTKLCLVDL 145 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~------------------------~---~~~~~liDT 145 (237)
.+|+++|.+|||||||+|+|++.. ..+++.|++|.+..... . ...+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 379999999999999999999984 66788888887543211 1 246899999
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC
Q 026538 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 187 (237)
Q Consensus 146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~ 187 (237)
||+..... ....+...++.....+|++++|+|++.+
T Consensus 79 pG~~~~a~------~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAH------EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchh------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 99854211 1123445555666779999999998764
No 127
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.65 E-value=1.9e-16 Score=125.44 Aligned_cols=117 Identities=17% Similarity=0.001 Sum_probs=72.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..++|+++|.+|+|||||+++|++........+..+......+...+ ..+.+|||||..... .+...+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 77 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS----------RLRPLS 77 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCC----------C--CGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHH----------HHHHhh
Confidence 44799999999999999999999873211111222211111222222 478999999975411 112222
Q ss_pred HhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~~~~ 220 (237)
+. .+|++++|+|..+..+... ..++..+... +.|+++|+||+|+.....
T Consensus 78 ~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 78 YR---GADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp GT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred cc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcc
Confidence 32 3899999999875422222 2455555543 789999999999875443
No 128
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.3e-16 Score=136.99 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=83.4
Q ss_pred CCCCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 88 ~~~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
.+.+..+|+++|.||||||||+|+|++.. +.+++.|++|.+... ...+..+.++||||+....... ..+
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~------~~~ 139 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG------RGR 139 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----------CH
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh------hHH
Confidence 34567899999999999999999999984 678899999998753 3347889999999986532211 112
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHh-----cCCcEEEEEecCCC
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDT 215 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl 215 (237)
...++.....+|++++|+|+++++... ..+...+.. ...|.++++||+|.
T Consensus 140 g~~~l~~i~~ad~il~vvD~~~p~~~~-~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 140 GKQVIAVARTCNLLFIILDVNKPLHHK-QIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSHHHHH-HHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHHHHHhcCccccccccCccHHHH-HHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 233444444599999999998643221 122233333 25688999999996
No 129
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=3.8e-16 Score=123.32 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=71.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|||||||+|+|++... .....+..+.+. ..... + ..+.+|||||... +..+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~ 92 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF--PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSIT 92 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC--CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH
Confidence 347999999999999999999998732 222222222232 12222 2 4689999999642 12223
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
..++. .+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 93 ~~~~~---~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 93 QSYYR---SANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp GGGST---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 33333 3999999999875322111 234444433 3689999999999864
No 130
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.65 E-value=8.4e-16 Score=121.08 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+|+|++........+..+.......... + ..+.+|||||... +..+...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 97 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER----------FRTITQS 97 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGG----------GHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh----------HHHHHHH
Confidence 3579999999999999999999987321111111111111122222 2 4799999999642 1233344
Q ss_pred HHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|++...+.. ...++..+.. .+.|+++|+||+|+..
T Consensus 98 ~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 98 YYRS---ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp HHTT---CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 4444 89999999987532211 1244444443 4689999999999964
No 131
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.65 E-value=5e-16 Score=133.64 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=81.9
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
+|+++|.+|+|||||+++|+.. |+|.+.. +...+..+.+|||||+.+- . ..+. .++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f-----~----~~~~-~~~- 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPKT-----L----KSLI-TAL- 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTTC-----H----HHHH-HHH-
T ss_pred EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHHH-----H----HHHH-HHH-
Confidence 8999999999999999999832 1222222 2223678999999998641 1 1111 122
Q ss_pred ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcE-EEEEe-cCCCCChHHHHHHHHHHHHHH
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT-KTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pi-ilv~N-K~Dl~~~~~~~~~~~~l~~~l 232 (237)
..+|++++|+| ..+...+..+++..+...++|. ++|+| |+|+ +.+......+++++.+
T Consensus 82 --~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l 141 (370)
T 2elf_A 82 --NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVIT 141 (370)
T ss_dssp --HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT
T ss_pred --HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH
Confidence 23999999999 8888888888888888888898 99999 9999 6655555555555544
No 132
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.65 E-value=2.3e-16 Score=124.19 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=71.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
.++|+++|.+|||||||+|+|++........+..+......+... ...+.+|||||.... ..+...++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~ 94 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY----------DRLRPLSY 94 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGG----------TTTGGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhH----------HHHHHHhc
Confidence 369999999999999999999987421111111111111122222 246899999996431 11111222
Q ss_pred hccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538 170 STRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~~~~ 220 (237)
..+|++++|+|.....+... ..++..+... +.|+++|+||+|+.....
T Consensus 95 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 95 ---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146 (201)
T ss_dssp ---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence 23899999999875322211 3455555543 799999999999986543
No 133
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.65 E-value=1.1e-16 Score=127.86 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=78.0
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc---CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
...++|+++|.+|||||||+|+++.........+..|++........ +..+.+|||||..... .+..
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 82 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG----------GLRD 82 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTS----------CCCH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHh----------HHHH
Confidence 34579999999999999999996654334556677777776654433 3578999999964311 1122
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc--CCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~piilv~NK~Dl~~ 217 (237)
.++.. +|++++|+|++...+... ..++..+... +.|+++|+||+|+..
T Consensus 83 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 83 GYYIQ---AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp HHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 33332 899999999886422222 2344444432 789999999999864
No 134
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.65 E-value=4.3e-15 Score=137.25 Aligned_cols=125 Identities=20% Similarity=0.258 Sum_probs=90.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE-----------------------------------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ----------------------------------------- 129 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~----------------------------------------- 129 (237)
..|+|+|+|.+|+|||||+|+|+|.. ..+.+..+ +|+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~-~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSC-CSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC-ccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 57899999999999999999999973 21111111 111
Q ss_pred -------------EEEEE-EcCCeEEEEeCCCCCCcc---cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH
Q 026538 130 -------------TINFF-KLGTKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192 (237)
Q Consensus 130 -------------~~~~~-~~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~ 192 (237)
.+.++ .....++|+||||+.... ....+...+..++..|+. ..+|++++|+|++.++...+
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhH
Confidence 01111 123468999999987632 123345567778888876 45899999999998877777
Q ss_pred H-HHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 193 H-ELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 193 ~-~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
. .+++.+...+.|+++|+||+|+++..
T Consensus 206 ~l~ll~~L~~~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 206 ALKIAKEVDPQGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHHHHCTTCSSEEEEEECTTSSCTT
T ss_pred HHHHHHHHHhcCCCEEEEEeCcccCCcc
Confidence 6 78888888889999999999998653
No 135
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.65 E-value=1.7e-16 Score=124.95 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=69.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|+|||||+|+|++... .....+..+.+. ..... + ..+.+|||||..... .+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 74 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ----------SLG 74 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC--CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS----------CSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH----------HhH
Confidence 457999999999999999999998842 122222222332 22222 2 468999999964311 111
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-------cCCcEEEEEecCCCCC
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~piilv~NK~Dl~~ 217 (237)
..++ ..+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+..
T Consensus 75 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 75 VAFY---RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp CGGG---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred HHHH---hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 1222 23899999999875422111 223333321 3689999999999974
No 136
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=2.3e-16 Score=123.05 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=74.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+|+|++........+..+++....... .+..+.+|||||.. .+..+...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 91 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE----------RYRTITTA 91 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH----------HCHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHHH
Confidence 457999999999999999999998742122222223333333222 24579999999942 12334444
Q ss_pred HHhccccccEEEEEEeCCCCCCh-hHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|++...+. ....++..+.. .+.|+++|+||+|+..
T Consensus 92 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 92 YYRG---AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 5544 8999999998753211 12345555544 4789999999999854
No 137
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.64 E-value=8.4e-16 Score=117.96 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=70.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcC---CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
..++|+++|.+|||||||+|+|++........+..+...... +...+ ..+.+|||||..... .+..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG----------KMLD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC----------TTHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc----------chhh
Confidence 347999999999999999999998742111122222222111 22222 579999999965311 1222
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh-----cCCc-EEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTK-YQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p-iilv~NK~Dl~~ 217 (237)
.++.. +|++++|+|++...+... ..++..+.. .+.| +++|+||+|+.+
T Consensus 75 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 75 KYIYG---AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred HHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 33333 899999999876422211 234444443 2456 899999999864
No 138
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=2e-15 Score=118.21 Aligned_cols=113 Identities=14% Similarity=0.033 Sum_probs=70.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..++|+++|.+|||||||+|+|++........+..+......+... ...+.+|||||... . .....+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~--------~~~~~~ 95 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED---T--------IQREGH 95 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---C--------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---c--------cchhhh
Confidence 4579999999999999999999987421111122222211112222 35689999999764 1 112223
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHH----hcCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~ 217 (237)
+.. +|++++|+|++...+... ..++..+. ..+.|+++|+||+|+..
T Consensus 96 ~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 96 MRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 332 899999999875322111 22333333 24789999999999864
No 139
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.64 E-value=1.3e-15 Score=118.30 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=68.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccC-CCCceEEEEEE--------EcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFF--------KLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~t~~~~~~--------~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (237)
.+|+++|++|||||||+|+|++... ..... .+....+.... .....+.+|||||... +..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~-~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~ 71 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKK-SDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE----------FYS 71 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHH----------HHT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-ccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH----------HHH
Confidence 6899999999999999999998521 11111 12122222111 1256789999999531 122
Q ss_pred HHHHHHhccccccEEEEEEeCCCCCCh--hHHHHHHHHHh--cCCcEEEEEecCCCCChHHH
Q 026538 164 LVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER--SQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~--~~~piilv~NK~Dl~~~~~~ 221 (237)
+...|+.. ++++++|+|.+.+... ....++..+.. .+.|+++|+||+|+......
T Consensus 72 ~~~~~~~~---~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 130 (184)
T 2zej_A 72 THPHFMTQ---RALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQR 130 (184)
T ss_dssp TSHHHHHH---SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHH
T ss_pred hhHHHccC---CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhh
Confidence 22333333 7899999998754211 11334444432 36899999999999876544
No 140
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.64 E-value=4e-16 Score=122.51 Aligned_cols=113 Identities=14% Similarity=0.022 Sum_probs=69.0
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
...++|+++|.+|||||||+|+|++.. ......+++.+. .+...+ ..+.+|||||...... +
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~ 84 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK----------L 84 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS----------S
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH----------H
Confidence 356799999999999999999999873 223333333221 222223 3577999999754211 1
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhHH--HHHHHHHhc--CCcEEEEEecCCCCCh
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFP 218 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~Dl~~~ 218 (237)
...++. .+|++++|+|++...+.... .++..+... +.|+++|+||+|+...
T Consensus 85 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 85 RPLCYT---NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp GGGGGT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred hHhhcC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 112222 38999999998754322222 355545443 7899999999998753
No 141
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=125.22 Aligned_cols=112 Identities=15% Similarity=0.066 Sum_probs=69.4
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE-E-EE---EEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I-NF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~-~-~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
...++|+++|.+|||||||+|+|++... . .....++.. . .. ......+.+|||||...... +
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~ 88 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEF-S--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI----------L 88 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC-C--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC----------C
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCC-C--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH----------H
Confidence 4567999999999999999999998842 2 222222221 1 11 11246689999999654211 1
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
...++. .+|++++|+|+....+... ..++..+.. .++|+++|+||+|+..
T Consensus 89 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 89 PYSFII---GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CGGGTT---TCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred HHHHHh---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 112222 3899999999875321111 234444433 2689999999999864
No 142
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.64 E-value=1.4e-15 Score=130.55 Aligned_cols=123 Identities=23% Similarity=0.316 Sum_probs=80.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce------------------------------------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT------------------------------------------ 128 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t------------------------------------------ 128 (237)
..|.|+|+|.+|||||||+|+|+|.. +....... +|
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~-~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKD-FLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSC-CSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC-cCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 56899999999999999999999973 21111100 00
Q ss_pred ---------------EEEEEEE-cCCeEEEEeCCCCCCccc---chHHHHHHHHHHHHHHhccccccEEEEEEeCCC-CC
Q 026538 129 ---------------QTINFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-GV 188 (237)
Q Consensus 129 ---------------~~~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-~~ 188 (237)
..+.+.. ....+.+|||||+..... .......+..+...|+.. +|++++++|+.. ..
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~ 187 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDL 187 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCG
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCc
Confidence 0111111 145699999999876321 223445556677777665 899999998543 22
Q ss_pred -ChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 189 -KPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 189 -~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
......+++.+...+.|+++|+||+|+.++
T Consensus 188 ~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 188 ATSDAIKISREVDPSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp GGCHHHHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred CCHHHHHHHHHhcccCCCEEEEEeCCccCCC
Confidence 223355666666668899999999999754
No 143
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.64 E-value=3.3e-16 Score=123.51 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=71.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce--EEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t--~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|+|||||+|+|++... .....+..+ ........ + ..+.+|||||..... .+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 74 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR----------TIT 74 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC--CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT----------CCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHH----------HHH
Confidence 347999999999999999999998742 222223222 22222222 2 479999999965421 111
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCCh
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~~ 218 (237)
..++ ..+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 75 ~~~~---~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 75 SSYY---RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp GGGG---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHhc---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 1222 23899999999876422222 234444433 36899999999999753
No 144
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.64 E-value=1e-15 Score=134.60 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=81.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee-----------------------------ccCCCCceEEEEE---EEcCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----------------------------TSDKPGLTQTINF---FKLGT 138 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-----------------------------~~~~~g~t~~~~~---~~~~~ 138 (237)
..++|+++|.+|+|||||+++|+....... ....+|+|.+..+ ...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 346999999999999999999986410000 0113566766542 23467
Q ss_pred eEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-------CChhHHHHHHHHHhcCC-cEEEEE
Q 026538 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (237)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-piilv~ 210 (237)
.+.+|||||+.+ +.. ........+|++++|+|+..+ +..+..+.+..+...++ |+++|+
T Consensus 85 ~~~iiDtpG~~~----------f~~---~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHRD----------FVK---NMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 151 (435)
T ss_dssp EEEECCCSSSTT----------HHH---HHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred EEEEEECCCcHH----------HHH---HHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 899999999864 112 222333459999999999876 55566666666666676 599999
Q ss_pred ecCCCCC----hHHHHHHHHHHHHHHH
Q 026538 211 TKTDTVF----PIDVARRAMQIEEVIF 233 (237)
Q Consensus 211 NK~Dl~~----~~~~~~~~~~l~~~l~ 233 (237)
||+|+.+ ++......+++++.+.
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~ 178 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMR 178 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHH
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHH
Confidence 9999986 2333444555555443
No 145
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.63 E-value=1.4e-16 Score=123.04 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=52.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEE-cC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.++|+++|.+|||||||+|+|++.. ......+.++.+.. ... .+ ..+.+|||||... +..+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 75 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA--FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITT 75 (183)
T ss_dssp EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh----------hhhhHH
Confidence 4799999999999999999999763 11222222333322 112 23 5789999999642 112222
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
.++ ..+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 76 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 76 AYY---RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp TTT---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred HHH---hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 222 23899999999876422111 234444443 3689999999999974
No 146
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.63 E-value=4.8e-15 Score=115.19 Aligned_cols=108 Identities=14% Similarity=0.080 Sum_probs=69.6
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
...++|+++|.+|||||||+|++++........+..+ .....+...+ ..+.+|||||.... .
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~----- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFKKEIVVDGQSYLLLIRDEGGPPEL----------Q----- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEEEEEEETTEEEEEEEEECSSSCCH----------H-----
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEEEEEEECCEEEEEEEEECCCChhh----------h-----
Confidence 3457999999999999999999998742111112111 1111222223 45788999997531 1
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTV 216 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~ 216 (237)
|+.. +|++++|+|.++..+... ..++..+.. .+.|+++|+||+|+.
T Consensus 82 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 FAAW---VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred eecC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2222 899999999886432222 345555544 368999999999984
No 147
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=128.83 Aligned_cols=138 Identities=22% Similarity=0.285 Sum_probs=75.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCC------CCceEEEEEEE-----cC--CeEEEEeCCCCCCcccc----
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLTQTINFFK-----LG--TKLCLVDLPGYGFAYAK---- 154 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~------~g~t~~~~~~~-----~~--~~~~liDTpG~~~~~~~---- 154 (237)
.++|+++|++|+|||||+|+|++.. ....... ...|....... .+ ..+.+|||||+++....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~-~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTD-LYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCC-C---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCC-CCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3689999999999999999998763 2211111 11222222111 12 36899999999653211
Q ss_pred hHHHHHHHHHHHHHHhcccc----------ccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHH
Q 026538 155 EEVKDAWEELVKEYVSTRVS----------LKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~----------~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~ 223 (237)
..+...+......|+..... +++++|+++. .+++...+..+++.+. .++|+++|+||+|+.+..++..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHH
Confidence 11111111122244433222 3578888875 6677787777777764 4799999999999998777665
Q ss_pred HHHHHHHH
Q 026538 224 RAMQIEEV 231 (237)
Q Consensus 224 ~~~~l~~~ 231 (237)
..+.+.+.
T Consensus 195 ~k~~i~~~ 202 (361)
T 2qag_A 195 LKKRILDE 202 (361)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44454443
No 148
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.63 E-value=3.2e-16 Score=123.33 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=48.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceE-EE--EEEE-c----CCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFK-L----GTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~-~~--~~~~-~----~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (237)
.++|+++|.+|||||||+|+|++.. ........+++. +. .... . ...+.+|||||... +..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~ 88 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKG-SKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL----------YKE 88 (208)
T ss_dssp EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHH----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH----------HHH
Confidence 4699999999999999999999872 112222222221 22 1122 2 23689999999631 222
Q ss_pred HHHHHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh------cCCcEEEEEecCCCCC
Q 026538 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~------~~~piilv~NK~Dl~~ 217 (237)
+...++ ..+|++++|+|++.+.+.. ...++..+.. .+.|+++|+||+|+..
T Consensus 89 ~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 89 QISQYW---NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHSTTC---CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHH---hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 333333 3489999999987643211 2344555543 4789999999999976
No 149
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.63 E-value=1.1e-15 Score=116.38 Aligned_cols=112 Identities=15% Similarity=0.080 Sum_probs=63.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE---EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.++|+++|.+|||||||+|+|++... ..... +.++.+. .+... ...+.+|||||...... .+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 70 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQG-DHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG---------WLQD 70 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC-----------------C
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccC-ccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccch---------hhhh
Confidence 36899999999999999999987632 21111 1112211 11112 35688999999753100 0112
Q ss_pred HHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
.++.. +|++++|+|.+...+.. ...++..+.. .++|+++|+||+|+.+
T Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 71 HCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred hhhcc---CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 22222 89999999987532111 1233333332 2789999999999863
No 150
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.63 E-value=5e-16 Score=123.46 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=69.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-----EEEEc----------CCeEEEEeCCCCCCcccch
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKL----------GTKLCLVDLPGYGFAYAKE 155 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-----~~~~~----------~~~~~liDTpG~~~~~~~~ 155 (237)
..++|+++|.+|||||||+|+|++..... ...+..+.+. .+... ...+.||||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------ 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNP--KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCC--EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCc--CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence 34799999999999999999999873211 1111111111 11111 3569999999942
Q ss_pred HHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
.+......++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 96 ----~~~~~~~~~~~~---~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 96 ----RFRSLTTAFFRD---AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp ----HHHHHHHHHHTT---CCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred ----hHHhHHHHHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 123344445544 899999999875322111 223333322 3689999999999864
No 151
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.63 E-value=1.5e-16 Score=122.57 Aligned_cols=114 Identities=16% Similarity=-0.005 Sum_probs=66.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-----EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-----~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|+|||||+|++++... .....+++.+. ........+.+|||||.... ..+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF---PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY----------NRLR 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC---C----------CBCCCC-------CEEECCCC-CTT----------TTTG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhh----------hhhH
Confidence 457999999999999999999998731 22222222211 11122355779999996531 1112
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhHH--HHHHHHHhc--CCcEEEEEecCCCCChHH
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~Dl~~~~~ 220 (237)
..++. .+|++++|+|+....+.... .++..+... +.|+++|+||+|+.....
T Consensus 74 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 74 PLSYR---GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp GGGGT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred Hhhcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcc
Confidence 22222 38999999998754222221 355555542 789999999999875543
No 152
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.63 E-value=3.2e-16 Score=138.55 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=83.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhccccee-----------------------eccC------CCCceEEEE---EEEcCCe
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------RTSD------KPGLTQTIN---FFKLGTK 139 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~-----------------------~~~~------~~g~t~~~~---~~~~~~~ 139 (237)
.++|+++|.+|+|||||+|+|++..... .+.+ .+|.|.+.. +...+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4699999999999999999998641000 0001 245555432 2333567
Q ss_pred EEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCCh-------hHHHHHHHHHhcCCc-EEEEEe
Q 026538 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQTK-YQVVLT 211 (237)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~-------~~~~~~~~l~~~~~p-iilv~N 211 (237)
+.||||||+.+ +..........+|++++|+|+..+..+ +..+.+..+...++| +++|+|
T Consensus 87 ~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN 153 (458)
T 1f60_A 87 VTVIDAPGHRD-------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEECCCcHH-------------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence 99999999753 222233334459999999999865322 455555556666776 999999
Q ss_pred cCCCCC--hHHHHHHHHHHHHHH
Q 026538 212 KTDTVF--PIDVARRAMQIEEVI 232 (237)
Q Consensus 212 K~Dl~~--~~~~~~~~~~l~~~l 232 (237)
|+|+.. ++......+++++.+
T Consensus 154 K~Dl~~~~~~~~~~i~~~~~~~l 176 (458)
T 1f60_A 154 KMDSVKWDESRFQEIVKETSNFI 176 (458)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHH
Confidence 999973 444444455555443
No 153
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.63 E-value=1.8e-15 Score=135.71 Aligned_cols=128 Identities=17% Similarity=0.195 Sum_probs=86.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhccccee--------------ecc------CCCCceEE---EEEEEcCCeEEEEeCCCC
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTS------DKPGLTQT---INFFKLGTKLCLVDLPGY 148 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~--------------~~~------~~~g~t~~---~~~~~~~~~~~liDTpG~ 148 (237)
.++|+++|++|+|||||+++|+...... .+. ..+|.|.. ..+...+..+.||||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 3699999999999999999999642111 001 12222221 233445778999999998
Q ss_pred CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (237)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l 228 (237)
.+- ......++ ..+|++++|+|+..+.......++..+...++|+++|+||+|+..... .+..+.+
T Consensus 93 ~df----------~~~~~~~l---~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~-~~~~~~i 158 (529)
T 2h5e_A 93 EDF----------SEDTYRTL---TAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDP-MELLDEV 158 (529)
T ss_dssp TTC----------CHHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCH-HHHHHHH
T ss_pred hhH----------HHHHHHHH---HHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccH-HHHHHHH
Confidence 541 11122233 339999999999988888888888888878999999999999976432 3455666
Q ss_pred HHHHH
Q 026538 229 EEVIF 233 (237)
Q Consensus 229 ~~~l~ 233 (237)
++.++
T Consensus 159 ~~~l~ 163 (529)
T 2h5e_A 159 ENELK 163 (529)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 66554
No 154
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=121.25 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=70.5
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
...++|+++|.+|||||||+|+|++... .....++++.+ ..+... ...+.+|||||.... . . .+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---~---~---~~ 89 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQG--DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---G---G---WL 89 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEEC--CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG---G---H---HH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccC--CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc---h---h---hh
Confidence 4567999999999999999999986532 11222322222 122222 245789999997531 1 0 12
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChh-HHHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
...|+.. +|++++|+|.....+.. ...++..+.. .++|+++|+||+|+..
T Consensus 90 ~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 90 RDHCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred HHHhhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 2233332 89999999987532211 1234444433 3789999999999964
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.62 E-value=3.7e-17 Score=146.32 Aligned_cols=112 Identities=22% Similarity=0.318 Sum_probs=85.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE----cCCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
..|+|+++|++|+|||||+|+|++.. ......+++|.++..+. .+..+.+|||||+..-. .+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~--~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~----------~~~- 69 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ--VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS----------AMR- 69 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH--HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT----------TSB-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH----------HHH-
Confidence 45899999999999999999999873 22345567777653322 25579999999975410 111
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
......+|++++|+|+..+..++..+.+..+...++|+++|+||+|+..
T Consensus 70 --~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 70 --ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp --BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred --HHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 1122348999999999999999999999988888999999999999864
No 156
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.62 E-value=8e-16 Score=121.05 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=67.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+|+|++........+..+.+........ + ..+.+|||||... +..+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER----------FRSVTRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHH----------HSCCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh----------HHHHHHH
Confidence 3479999999999999999999987321111122222222222222 2 5799999999421 1122233
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. +|++++|+|+....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 94 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 94 YYRG---AAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp HHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred Hhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 3433 899999999875422211 234444432 3789999999999864
No 157
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.62 E-value=4.5e-17 Score=148.00 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=73.3
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeec------------------------------cCCCCceEEEEEEE---c
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFFK---L 136 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~------------------------------~~~~g~t~~~~~~~---~ 136 (237)
...++|+++|.+|+|||||+|+|++... ... ...+|+|.+..... .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~-~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELG-EINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHH-CC-------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcC-CcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3557899999999999999999975421 111 11456677654332 2
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC-----C--ChhHHHHHHHHHhcCCc-EEE
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----V--KPRDHELISLMERSQTK-YQV 208 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-----~--~~~~~~~~~~l~~~~~p-iil 208 (237)
+..+.||||||+.+-... .......+|++++|+|+..+ + ..+..+.+..+...++| +++
T Consensus 254 ~~~i~iiDTPGh~~f~~~-------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv 320 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG-------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320 (592)
T ss_dssp -----CCEEESSSEEEEE-------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred CeEEEEEECCChHHHHHH-------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEE
Confidence 577999999998642110 01111238999999998764 3 66777788888888887 999
Q ss_pred EEecCCCCC--hHHHHHHHHHHHHHH
Q 026538 209 VLTKTDTVF--PIDVARRAMQIEEVI 232 (237)
Q Consensus 209 v~NK~Dl~~--~~~~~~~~~~l~~~l 232 (237)
|+||+|+.. ........+.+.+.+
T Consensus 321 viNKiDl~~~~~~~~~~i~~el~~~l 346 (592)
T 3mca_A 321 SVNKLDLMSWSEDRFQEIKNIVSDFL 346 (592)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred EEeccccccccHHHHHHHHHHHHHHH
Confidence 999999975 444455555665554
No 158
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.62 E-value=1.1e-15 Score=122.25 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=69.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-c--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+|+|.+|||||||+++++.........+..|......... . ...+.||||+|... +..+...|
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~----------~~~l~~~~ 82 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER----------FRSLIPSY 82 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTT----------CGGGHHHH
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchh----------hhhHHHHH
Confidence 46999999999999999999997742222222222111111111 1 34678999999653 12344455
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHH---hcCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~piilv~NK~Dl~~ 217 (237)
+.. ++++++|+|....-+... ..++..+. ..++|+++|+||+|+..
T Consensus 83 ~~~---a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 83 IRD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp HTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred hcc---ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 555 999999999875322211 23444433 24689999999999864
No 159
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.62 E-value=1.6e-16 Score=141.19 Aligned_cols=112 Identities=22% Similarity=0.292 Sum_probs=83.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
+.|+|+++|++++|||||+++|.+.. ......+|+|.++..+. .+..+.+|||||+.+-. ..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~--v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~-------------~~ 67 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK--VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFT-------------SM 67 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH--HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCT-------------TS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC--CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHH-------------HH
Confidence 45899999999999999999999762 22233455665543222 35679999999975411 01
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.......+|++++|+|+.++..++..+.+..+...++|+++|+||+|+..
T Consensus 68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 68 RARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp BCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred HHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence 11223448999999999988888888888888888999999999999964
No 160
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=118.94 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=68.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEE---EEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~---~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
...+|+++|.+|||||||+|+|++... .....+++.+ ...... ...+.+|||||...... +
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~- 85 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF---ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----------C- 85 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----------T-
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC---CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----------H-
Confidence 447999999999999999999998742 2222223222 111112 34688999999653211 1
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh------cCCcEEEEEecCCCCC
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~piilv~NK~Dl~~ 217 (237)
..|+.. +|++++|+|.....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 86 ~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 86 ERYLNW---AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp HHHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred HHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 223333 899999999875322111 234444432 4799999999999854
No 161
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.3e-16 Score=124.65 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=68.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc-C--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+|+|.+|||||||+|+|++........+..+.+........ + ..+.+|||||..... .+...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 81 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR----------AITSA 81 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTT----------CCCGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchh----------hhHHH
Confidence 3479999999999999999999987421112222222222222222 3 478999999965311 11122
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++. .+|++++|+|+....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 82 ~~~---~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 82 YYR---GAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp GTT---TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred Hhc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 222 3899999999876432222 234444443 2689999999999864
No 162
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.61 E-value=1.9e-15 Score=137.06 Aligned_cols=127 Identities=18% Similarity=0.185 Sum_probs=76.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee-------cc------CCCCceEEE---EEEEc-----CCeEEEEeCCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------TS------DKPGLTQTI---NFFKL-----GTKLCLVDLPGYG 149 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-------~~------~~~g~t~~~---~~~~~-----~~~~~liDTpG~~ 149 (237)
..++|+++|++++|||||+++|+...+... +. ...|.|... .+.+. +..++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 356999999999999999999986421110 00 123444432 22111 2578999999985
Q ss_pred CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
+ . ......++.. +|++++|+|+..+.+.+....+..+...++|+++|+||+|+.... ..+..+++.
T Consensus 83 d------F----~~ev~~~l~~---aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei~ 148 (599)
T 3cb4_D 83 D------F----SYEVSRSLAA---CEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEIE 148 (599)
T ss_dssp G------G----HHHHHHHHHH---CSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred H------H----HHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHHH
Confidence 4 1 1122223332 899999999999888887777776777789999999999997532 233344444
Q ss_pred HH
Q 026538 230 EV 231 (237)
Q Consensus 230 ~~ 231 (237)
+.
T Consensus 149 ~~ 150 (599)
T 3cb4_D 149 DI 150 (599)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 163
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.61 E-value=7.8e-16 Score=130.54 Aligned_cols=113 Identities=17% Similarity=0.222 Sum_probs=70.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHh
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.++|+|+|.+|||||||+|+|++.. .... .+...... .+...+..+.||||||... +..+...++.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~-~~~~--~pT~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~ 231 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ 231 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSC-CEEE--EEETTEEEEEEEETTEEEEEEECC---------------CCSHHHHHT
T ss_pred cceEEEECCCCccHHHHHHHHhCCC-CCCc--ccccceEEEEEecCcEEEEEEECCCCHh----------HHHHHHHHhc
Confidence 3589999999999999999999874 2221 12111111 2223467899999999532 1122333443
Q ss_pred ccccccEEEEEEeCCCCCCh--hHHHHHHHHHh---cCCcEEEEEecCCCCChHH
Q 026538 171 TRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~Dl~~~~~ 220 (237)
. +|++++|+|+...... ....+...+.. .++|+++|+||+|+.....
T Consensus 232 ~---ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~ 283 (329)
T 3o47_A 232 N---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283 (329)
T ss_dssp T---EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred c---CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC
Confidence 3 8999999998754332 22333344333 2789999999999976443
No 164
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.61 E-value=1.7e-15 Score=140.03 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=87.6
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccccee----------eccC------CCCceEEE---EEEEcCCeEEEEeCCCCCC
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV----------RTSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~----------~~~~------~~g~t~~~---~~~~~~~~~~liDTpG~~~ 150 (237)
...++|+++|++|+|||||+|+|+...... .+.+ .+++|... .+...+..++||||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 456799999999999999999999531100 0111 22333322 2333467899999999865
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
- .. ....++.. +|++++|+|+..+.+..+...+..+...++|+++|+||+|+... +..+.++.+++
T Consensus 88 f--~~--------~~~~~l~~---aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~-~~~~~~~~l~~ 153 (693)
T 2xex_A 88 F--TV--------EVERSLRV---LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA-NFEYSVSTLHD 153 (693)
T ss_dssp C--CH--------HHHHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC-CHHHHHHHHHH
T ss_pred h--HH--------HHHHHHHH---CCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc-chHHHHHHHHH
Confidence 1 11 11222222 99999999999888888888888888889999999999999754 34455666666
Q ss_pred HHH
Q 026538 231 VIF 233 (237)
Q Consensus 231 ~l~ 233 (237)
.++
T Consensus 154 ~l~ 156 (693)
T 2xex_A 154 RLQ 156 (693)
T ss_dssp HHC
T ss_pred HhC
Confidence 543
No 165
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.61 E-value=9.8e-16 Score=118.76 Aligned_cols=114 Identities=17% Similarity=0.087 Sum_probs=69.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
..++|+++|.+|||||||+|+|++........+..+......+... ...+.+|||||.... ..+...+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~ 75 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVRPLS 75 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------TTTGGGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhh----------hhhHHhh
Confidence 3469999999999999999999987321111111111111111111 346899999996431 1111122
Q ss_pred HhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
+ ..+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 76 ~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 76 Y---PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp C---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred c---CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 2 23899999999875422222 234444443 3689999999999964
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.60 E-value=1.2e-15 Score=138.39 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=79.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCC-CceEEE--EEEEc-------------------CCeEEEEeCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTI--NFFKL-------------------GTKLCLVDLPGY 148 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~-g~t~~~--~~~~~-------------------~~~~~liDTpG~ 148 (237)
..|+|+++|++|+|||||+++|++.. .....+ +.|.++ .+... ...+.||||||+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~---v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSA---VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH---HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc---CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence 35799999999999999999999862 122222 333331 22211 124999999998
Q ss_pred CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
.+-.. +.. .....+|++++|+|+.+++..+..+.+..+...++|+++|+||+|+..
T Consensus 81 e~F~~----------~~~---r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 81 EAFTT----------LRK---RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp SCCTT----------SBC---SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred HHHHH----------HHH---HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 54210 011 122348999999999999999888888888888999999999999964
No 167
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.60 E-value=1.2e-14 Score=134.55 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=89.7
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccccee----------eccC------CCCceEEEE---EEEcC-------CeEEEE
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV----------RTSD------KPGLTQTIN---FFKLG-------TKLCLV 143 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~----------~~~~------~~g~t~~~~---~~~~~-------~~~~li 143 (237)
...++|+++|+.|+|||||+++|+...... ...+ ..|.|.... +...+ ..++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 356799999999999999999997531100 0111 234444332 22223 789999
Q ss_pred eCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHH
Q 026538 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (237)
Q Consensus 144 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~ 223 (237)
||||+.+ +......++.. +|++++|+|++.+.......++..+...++|+++|+||+|+... +..+
T Consensus 88 DTPG~~d----------f~~~~~~~l~~---aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~-~~~~ 153 (704)
T 2rdo_7 88 DTPGHVD----------FTIEVERSMRV---LDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA-NFLK 153 (704)
T ss_pred eCCCccc----------hHHHHHHHHHH---CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc-cHHH
Confidence 9999854 11222233332 99999999999888877778888877789999999999998754 3555
Q ss_pred HHHHHHHHHH
Q 026538 224 RAMQIEEVIF 233 (237)
Q Consensus 224 ~~~~l~~~l~ 233 (237)
.++++++.++
T Consensus 154 ~~~~l~~~l~ 163 (704)
T 2rdo_7 154 VVNQIKTRLG 163 (704)
T ss_pred HHHHHHHHhC
Confidence 6666666554
No 168
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.59 E-value=2.1e-15 Score=119.32 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=70.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE--EEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~--~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
..++|+++|.+|||||||+|+|++... . ....+...... .+... ...+.+|||||.... ..+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~ 94 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVRP 94 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-C-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG----------TTTGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-C-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh----------hHHHH
Confidence 346999999999999999999998742 1 11122111111 11111 346899999996431 11112
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHh--cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~Dl~~ 217 (237)
.++ ..+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 95 ~~~---~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 95 LSY---PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GGC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 222 23899999999875422222 234444444 3689999999999964
No 169
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.59 E-value=1.1e-16 Score=137.78 Aligned_cols=137 Identities=16% Similarity=0.201 Sum_probs=91.0
Q ss_pred CEEEEecCCCCchhhHHHHHhccc-----ceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccc-hHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVK 166 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 166 (237)
.+|+++|.+|+|||||+|+|++.. ....++..+|+|++...+..+..+.++||||+.+.... +.+. ...+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVG---KQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSC---HHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhh---HHHHH
Confidence 589999999999999999999862 23557889999999888877777999999999764311 1111 11222
Q ss_pred HHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
.++ .....+.++|++++...........+..+...+.|+++|+||+|.+...+.....+.+++.++
T Consensus 238 ~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 238 LIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAG 303 (368)
T ss_dssp HHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred Hhc-cccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhC
Confidence 222 234478899999874321111222233344557899999999999987777777777776554
No 170
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.38 E-value=9.2e-17 Score=126.62 Aligned_cols=113 Identities=14% Similarity=-0.003 Sum_probs=72.4
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEE-----EEEEcCCeEEEEeCCCCCCcccchHHHHHHHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~-----~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (237)
...++|+++|.+|||||||+|+|++.. ......+++.+. ........+.+|||||... +..+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~ 94 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRL 94 (204)
Confidence 345799999999999999999999763 122222222221 1112245577999999643 1222
Q ss_pred HHHHHhccccccEEEEEEeCCCCCChhH--HHHHHHHHhc--CCcEEEEEecCCCCCh
Q 026538 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFP 218 (237)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~piilv~NK~Dl~~~ 218 (237)
...++.. +|++++|+|++...+... ..++..+... ++|+++|+||+|+.+.
T Consensus 95 ~~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 95 RPLSYPQ---TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 2333332 899999999875433222 2455555544 7899999999999754
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.59 E-value=6.1e-15 Score=130.64 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=74.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhccccee-----------------------eccC------CCCceEEEE---EEEcCCe
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------RTSD------KPGLTQTIN---FFKLGTK 139 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~-----------------------~~~~------~~g~t~~~~---~~~~~~~ 139 (237)
.++|+++|.+++|||||+++|+...+.. .+.+ ..|.|.+.. +...+..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 4699999999999999999997531100 0111 245665553 2223677
Q ss_pred EEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-------ChhHHHHHHHHHhcCCc-EEEEEe
Q 026538 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVLT 211 (237)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~p-iilv~N 211 (237)
+.||||||+.+ +..........+|++++|+|+..+. ..+..+.+..+...++| +++|+|
T Consensus 123 ~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN 189 (467)
T 1r5b_A 123 FSLLDAPGHKG-------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 189 (467)
T ss_dssp EEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred EEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEE
Confidence 99999999743 1222223334499999999998764 13455666666677888 999999
Q ss_pred cCCCCC----hHHHHHHHHHHHHHH
Q 026538 212 KTDTVF----PIDVARRAMQIEEVI 232 (237)
Q Consensus 212 K~Dl~~----~~~~~~~~~~l~~~l 232 (237)
|+|+.. .+......+++.+.+
T Consensus 190 K~Dl~~~~~~~~~~~~i~~e~~~~l 214 (467)
T 1r5b_A 190 KMDEPSVQWSEERYKECVDKLSMFL 214 (467)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHH
T ss_pred CccCCCccccHHHHHHHHHHHHHHH
Confidence 999964 233344444454444
No 172
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.59 E-value=2e-15 Score=136.81 Aligned_cols=126 Identities=24% Similarity=0.269 Sum_probs=79.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceee-------ccC------CCCceEE---EEEEEc-----CCeEEEEeCCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------TSD------KPGLTQT---INFFKL-----GTKLCLVDLPGYG 149 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~-------~~~------~~g~t~~---~~~~~~-----~~~~~liDTpG~~ 149 (237)
..++|+++|++++|||||+++|+....... +.+ ..|.|.. ..+.+. ...++||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 456999999999999999999986421110 001 1233322 112111 2568899999986
Q ss_pred CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
+ +......++. .+|++++|+|++.+.+.+....+..+...++|+++|+||+|+.... ..+..+++.
T Consensus 85 d----------F~~ev~r~l~---~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~ 150 (600)
T 2ywe_A 85 D----------FSYEVSRALA---ACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIE 150 (600)
T ss_dssp G----------GHHHHHHHHH---TCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred h----------HHHHHHHHHH---hCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHH
Confidence 4 1112223333 2899999999999988888777777777899999999999997533 233344444
Q ss_pred H
Q 026538 230 E 230 (237)
Q Consensus 230 ~ 230 (237)
+
T Consensus 151 ~ 151 (600)
T 2ywe_A 151 E 151 (600)
T ss_dssp H
T ss_pred H
Confidence 3
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.59 E-value=5.2e-15 Score=136.71 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=85.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccccee----e------ccC------CCCceEEE---EEEEcCCeEEEEeCCCCCCc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV----R------TSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFA 151 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~----~------~~~------~~g~t~~~---~~~~~~~~~~liDTpG~~~~ 151 (237)
..++|+++|++|+|||||+|+|+...... . +.+ ..+.|... .+...+..++||||||+.+-
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 45799999999999999999998431100 0 111 22333322 23334678999999998541
Q ss_pred ccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV 231 (237)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~ 231 (237)
. .....++.. +|++++|+|+..+........+..+...++|+++|+||+|+.... ..+..+.+++.
T Consensus 91 ------~----~~~~~~l~~---aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-~~~~~~~l~~~ 156 (691)
T 1dar_A 91 ------T----IEVERSMRV---LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD-LWLVIRTMQER 156 (691)
T ss_dssp ------H----HHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred ------H----HHHHHHHHH---CCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCC-HHHHHHHHHHH
Confidence 1 112222322 999999999999888888888888888899999999999997543 44555555554
Q ss_pred H
Q 026538 232 I 232 (237)
Q Consensus 232 l 232 (237)
+
T Consensus 157 l 157 (691)
T 1dar_A 157 L 157 (691)
T ss_dssp T
T ss_pred h
Confidence 4
No 174
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.58 E-value=5.9e-15 Score=132.91 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=90.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccccee--------------eccC------CCCce---EEEEEEEcCCeEEEEeCCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTSD------KPGLT---QTINFFKLGTKLCLVDLPGYG 149 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~--------------~~~~------~~g~t---~~~~~~~~~~~~~liDTpG~~ 149 (237)
.+|+|+|+.++|||||..+|+-..+.. .+.+ .+|.| ..+.+.+.+..++||||||+.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 599999999999999999987321100 1111 12222 223455668899999999986
Q ss_pred CcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
+ -..+ ..+.+..+|++++|+|+..++..+...+++.+...++|+++++||+|.... +..+.+++++
T Consensus 112 D--F~~E-----------v~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a-d~~~~~~~i~ 177 (548)
T 3vqt_A 112 D--FSED-----------TYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL-HPLDVMADIE 177 (548)
T ss_dssp G--CSHH-----------HHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC-CHHHHHHHHH
T ss_pred H--HHHH-----------HHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc-chhHhhhhhh
Confidence 5 1111 122222399999999999999999999999999999999999999998643 3566777777
Q ss_pred HHHH
Q 026538 230 EVIF 233 (237)
Q Consensus 230 ~~l~ 233 (237)
+.++
T Consensus 178 ~~l~ 181 (548)
T 3vqt_A 178 QHLQ 181 (548)
T ss_dssp HHHT
T ss_pred hhcC
Confidence 7765
No 175
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.58 E-value=2.1e-15 Score=134.61 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=72.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
.++|+++|.+|||||||+|+|++.. .....+..+.+.. .+...+..+.+|||||.... ..+...|+.
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~-~~~~~~T~~~~~~-~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~- 388 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDKI----------RPLWRHYYT- 388 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEEE-EEESSSCEEEEEEECCCGGG----------SGGGGGGGT-
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC-CCCcCCccceeEE-EEEeCCEEEEEEECCCcHHH----------HHHHHHHhc-
Confidence 4699999999999999999999984 2322233332222 12234788999999996431 111222332
Q ss_pred cccccEEEEEEeCCCCCChhH-HHHHHHH-Hh---cCCcEEEEEecCCCCCh
Q 026538 172 RVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~---~~~piilv~NK~Dl~~~ 218 (237)
.+|++++|+|++...+... ..++..+ .. .++|+++|+||+|+...
T Consensus 389 --~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 389 --GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp --TCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred --cCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 3999999999886422222 2223233 22 37899999999999653
No 176
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.58 E-value=1.5e-16 Score=125.08 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=68.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE-cC--CeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|.+|||||||+|+|++........+..+.+....... .+ ..+.+|||||...... +...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 101 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT----------ITSS 101 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC----------CSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH----------HHHH
Confidence 357999999999999999999998732111111112222222222 22 4689999999653211 1112
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHhc---CCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~piilv~NK~Dl~~ 217 (237)
++. .+|++++|+|+++..+... ..++..+... +.|+++|+||+|+.+
T Consensus 102 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 102 YYR---GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp --C---CCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred Hhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 222 3899999999876432222 3344445433 689999999999864
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.58 E-value=2.2e-14 Score=136.63 Aligned_cols=129 Identities=20% Similarity=0.245 Sum_probs=85.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc---c------ee-----eccCCCCceEEE---EEEEcCCeEEEEeCCCCCCccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW---G------VV-----RTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~---~------~~-----~~~~~~g~t~~~---~~~~~~~~~~liDTpG~~~~~~ 153 (237)
..++|+++|.+++|||||+++|++.. . .. ......|.|.+. .+...+..+.||||||+.+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed--- 371 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD--- 371 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH---
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH---
Confidence 45799999999999999999998741 0 00 011234555443 2333467899999999632
Q ss_pred chHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecCCCCChHH-HHHHHHHHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEEV 231 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~Dl~~~~~-~~~~~~~l~~~ 231 (237)
+..........+|++++|+|+..+...+..+++..+...++| +++|+||+|+.+..+ .....+++.+.
T Consensus 372 ----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~el 441 (1289)
T 3avx_A 372 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVREL 441 (1289)
T ss_dssp ----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence 233333444559999999999988888888888877777899 799999999986433 23333444443
Q ss_pred H
Q 026538 232 I 232 (237)
Q Consensus 232 l 232 (237)
+
T Consensus 442 L 442 (1289)
T 3avx_A 442 L 442 (1289)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.56 E-value=1.7e-14 Score=121.25 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=72.1
Q ss_pred EEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (237)
+|+++|.+|||||||++.+.+.. ........+.|..+.+ ......+.||||||...-... .| ....|++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~-~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~-----~l--~~~~yyr~ 72 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM-QPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEP-----SY--DSERLFKS 72 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC-CSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCC-----SH--HHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHcCC-CCCccceecCeeeeeeEEEccEEEEEEEECCCchhccch-----hh--hhhhhccC
Confidence 58999999999999999887652 1111111222222211 123478999999997542100 01 13455554
Q ss_pred cccccEEEEEEeCCCCCChhHHHH---HHHHHh--cCCcEEEEEecCCCCChHHH
Q 026538 172 RVSLKRVCLLIDTKWGVKPRDHEL---ISLMER--SQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~---~~~l~~--~~~piilv~NK~Dl~~~~~~ 221 (237)
++++++|+|+...+......+ +..+.. .++|+++|+||+|+..+.+.
T Consensus 73 ---a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R 124 (331)
T 3r7w_B 73 ---VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFK 124 (331)
T ss_dssp ---CSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHH
T ss_pred ---CCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhh
Confidence 999999999886633332333 222222 36899999999999876543
No 179
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.56 E-value=9.8e-17 Score=138.08 Aligned_cols=137 Identities=16% Similarity=0.152 Sum_probs=93.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcc----cceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcccc-hHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~----~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~ 167 (237)
.+|+++|.+|+|||||+|+|++. .....++..+|+|++......+..+.++||||+...... ..+. ......
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVD---ARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSC---TTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHh---HHHHHH
Confidence 48999999999999999999986 123567889999999888877777999999998764211 1111 111222
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIF 233 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l~ 233 (237)
++ .....+.++|++++...+.......+..+...+.|+++++||+|.+...+.....+.+++.++
T Consensus 240 ~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g 304 (369)
T 3ec1_A 240 IT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLG 304 (369)
T ss_dssp HS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT
T ss_pred Hh-cccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcC
Confidence 22 224489999999984321111122233344557899999999999876666666666666554
No 180
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.56 E-value=1.1e-14 Score=137.16 Aligned_cols=111 Identities=20% Similarity=0.280 Sum_probs=77.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccC---------------CCCceEE---EEEEEc----------------C
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQT---INFFKL----------------G 137 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~---------------~~g~t~~---~~~~~~----------------~ 137 (237)
.++|+|+|++|+|||||+++|+.... ..... .+|.|.. ..+... +
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g-~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAG-IISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHB-CCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 46999999999999999999987521 11111 1222221 111111 4
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
..++||||||+.+- ......++.. +|++++|+|+..+.+.+....+..+...++|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df----------~~~~~~~l~~---aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDF----------SSEVTAALRV---TDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSS----------CHHHHHHHHT---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhh----------HHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 67899999998651 1122233333 999999999999888888777777777789999999999986
No 181
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=1.1e-13 Score=120.34 Aligned_cols=141 Identities=18% Similarity=0.287 Sum_probs=89.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccccee---eccCCCCceEEE-EEEEc--C--CeEEEEeCCCCCCcccch----H--
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTI-NFFKL--G--TKLCLVDLPGYGFAYAKE----E-- 156 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~---~~~~~~g~t~~~-~~~~~--~--~~~~liDTpG~~~~~~~~----~-- 156 (237)
..++++|+|++|+|||||+|.|+|.. +. .....++.+... .+... + ..++++|++|++...... .
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~-l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK-FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC-C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc-ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 34569999999999999999999973 11 111224444432 22211 1 268999999997642211 1
Q ss_pred --HHHHHHHHHHHHHhcc------ccc--c-EEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHH
Q 026538 157 --VKDAWEELVKEYVSTR------VSL--K-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 225 (237)
Q Consensus 157 --~~~~~~~~~~~~~~~~------~~~--d-~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~ 225 (237)
+...+..++..+.... ..+ | +++|++|+.+++...+.++++.+. .++|+|+|+||+|.+++.++....
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~ 198 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFK 198 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHH
Confidence 2233333343332111 122 3 466778888899999999998887 689999999999999999888888
Q ss_pred HHHHHHHH
Q 026538 226 MQIEEVIF 233 (237)
Q Consensus 226 ~~l~~~l~ 233 (237)
+.+.+.+.
T Consensus 199 ~~I~~~L~ 206 (427)
T 2qag_B 199 IKITSELV 206 (427)
T ss_dssp HHHHHHHB
T ss_pred HHHHHHHH
Confidence 88777554
No 182
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.54 E-value=6.5e-15 Score=124.18 Aligned_cols=112 Identities=16% Similarity=0.032 Sum_probs=72.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE---EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~---~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|+|||||+|++++.. ......+++.+.. +...+ ..+.+|||||.... ....
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 220 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRLR 220 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC---CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG----------TTTG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC---CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhh----------hHHH
Confidence 34799999999999999999999873 2333344443322 22223 34569999997431 1111
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhHH--HHHHHHHhc--CCcEEEEEecCCCCCh
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFP 218 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~Dl~~~ 218 (237)
..++ ..+|++++|+|++...+.... .++..+... ++|+++|+||+|+.+.
T Consensus 221 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 221 PLSY---PQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp GGGC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred HHhc---cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 2222 238999999998764332222 344555443 7899999999998654
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=6.7e-14 Score=121.91 Aligned_cols=141 Identities=22% Similarity=0.267 Sum_probs=80.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccC-----CCCceE-EE-EE----EEcCCeEEEEeCCCCCCcccc----hH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-----KPGLTQ-TI-NF----FKLGTKLCLVDLPGYGFAYAK----EE 156 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-----~~g~t~-~~-~~----~~~~~~~~liDTpG~~~~~~~----~~ 156 (237)
.++|+|+|++|||||||+|.|++......... ...++. .. .+ ......+.+|||||++..... ..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 46889999999999999999998742111110 011111 11 11 111236899999998753211 11
Q ss_pred HHHHHHHHHHHHHhc----------cccccEEEEEEeCC-CCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHH
Q 026538 157 VKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 225 (237)
Q Consensus 157 ~~~~~~~~~~~~~~~----------~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~ 225 (237)
+..........|+.. ...+++++|++++. +++...+..+++.+.. ++|+|+|+||+|+.++.++....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k 189 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 189 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHH
Confidence 111111222233211 12245567776665 6888888888888865 79999999999999888777666
Q ss_pred HHHHHHHH
Q 026538 226 MQIEEVIF 233 (237)
Q Consensus 226 ~~l~~~l~ 233 (237)
+.+.+.+.
T Consensus 190 ~~i~~~~~ 197 (418)
T 2qag_C 190 KQIMKEIQ 197 (418)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 184
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.4e-14 Score=115.36 Aligned_cols=114 Identities=18% Similarity=0.108 Sum_probs=67.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCc--e-EEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--T-QTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~--t-~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (237)
..++|+++|.+|||||||+|++++... ......+.+ + ....+...+ ..+.+|||+|... . ...+.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~-~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~------~---~~~l~ 105 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHD-SMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG------E---NEWLH 105 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCC-TTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH------H---HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc------h---hhhHH
Confidence 347999999999999999999997532 222222222 1 111222223 3467899999532 0 11222
Q ss_pred HHHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
..|+. .++++++|+|....-+... ..+...+.. .++|+++|+||+|+..
T Consensus 106 ~~~~~---~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 106 DHCMQ---VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HCCCC---CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred HHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 22222 3799999999875321111 234443432 3689999999999864
No 185
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.52 E-value=7.9e-14 Score=114.96 Aligned_cols=141 Identities=21% Similarity=0.335 Sum_probs=88.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeec----c--CCCCce--EEEEEE----EcCCeEEEEeCCCCCCcccc----hH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT----S--DKPGLT--QTINFF----KLGTKLCLVDLPGYGFAYAK----EE 156 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~----~--~~~g~t--~~~~~~----~~~~~~~liDTpG~~~~~~~----~~ 156 (237)
++++++|++|+|||||+|.|+|....... . +.+.++ +.+.+. .....++++|+||++..... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 58999999999999999999986311100 0 111111 112111 12346899999998764221 11
Q ss_pred HHHH----HHHHHHHHHhcc-------ccccEEEEEEeC-CCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHH
Q 026538 157 VKDA----WEELVKEYVSTR-------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR 224 (237)
Q Consensus 157 ~~~~----~~~~~~~~~~~~-------~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~ 224 (237)
+... +.......++.. ..+.++++++|. .+++.+.+.++++.+... +++++|+||+|.++..+....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~ 161 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSEF 161 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHHH
Confidence 2211 111111221111 125778888884 478999999999999887 999999999999999988888
Q ss_pred HHHHHHHHHh
Q 026538 225 AMQIEEVIFY 234 (237)
Q Consensus 225 ~~~l~~~l~~ 234 (237)
.+.+++.+..
T Consensus 162 k~~i~~~l~~ 171 (270)
T 3sop_A 162 KQRVRKELEV 171 (270)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776653
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.52 E-value=1e-13 Score=127.67 Aligned_cols=128 Identities=22% Similarity=0.267 Sum_probs=89.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccccee----e------ccC------CCCce---EEEEEEEcCCeEEEEeCCCCCCc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV----R------TSD------KPGLT---QTINFFKLGTKLCLVDLPGYGFA 151 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~----~------~~~------~~g~t---~~~~~~~~~~~~~liDTpG~~~~ 151 (237)
...+|+++|++|+|||||+++|++..... . ..+ ..+.| ....+...+..+++|||||+.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~- 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD- 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG-
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc-
Confidence 45699999999999999999999542110 0 000 01222 3334455577899999999753
Q ss_pred ccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 026538 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEV 231 (237)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~ 231 (237)
. ......++.. +|++++|+|+..++......+++.+...++|+++|+||+|+. ....+..+.+.+.
T Consensus 87 -----f----~~~~~~~l~~---ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~--~~~~~~~~~l~~~ 152 (665)
T 2dy1_A 87 -----F----VGEIRGALEA---ADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG--GDYYALLEDLRST 152 (665)
T ss_dssp -----G----HHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC--CCHHHHHHHHHHH
T ss_pred -----h----HHHHHHHHhh---cCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh--hhHHHHHHHHHHH
Confidence 1 1122223332 899999999998988888888888888899999999999987 3455566666665
Q ss_pred HH
Q 026538 232 IF 233 (237)
Q Consensus 232 l~ 233 (237)
++
T Consensus 153 l~ 154 (665)
T 2dy1_A 153 LG 154 (665)
T ss_dssp HC
T ss_pred hC
Confidence 54
No 187
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.51 E-value=3.6e-14 Score=131.60 Aligned_cols=130 Identities=20% Similarity=0.219 Sum_probs=88.5
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccccee----e------ccC------CCCceEE---EEEEEc-------CCeEEEE
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV----R------TSD------KPGLTQT---INFFKL-------GTKLCLV 143 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~----~------~~~------~~g~t~~---~~~~~~-------~~~~~li 143 (237)
++..+|+|+|+.++|||||..+|+-..+.. . +.+ .+|.|.. +.+.+. +..++||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 355799999999999999999987432110 0 111 1223321 223322 3579999
Q ss_pred eCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHH
Q 026538 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (237)
Q Consensus 144 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~ 223 (237)
||||+.+ -..++. ..+ ..+|++++|+|+..+++.+...+++++...++|.++++||+|.... +...
T Consensus 91 DTPGHvD--F~~Ev~--------~aL---r~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a-~~~~ 156 (709)
T 4fn5_A 91 DTPGHVD--FTIEVE--------RSL---RVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA-NFLR 156 (709)
T ss_dssp CCCSCTT--CHHHHH--------HHH---HHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC-CHHH
T ss_pred eCCCCcc--cHHHHH--------HHH---HHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc-cHHH
Confidence 9999865 112121 112 2299999999999999999999999999999999999999998643 3555
Q ss_pred HHHHHHHHHH
Q 026538 224 RAMQIEEVIF 233 (237)
Q Consensus 224 ~~~~l~~~l~ 233 (237)
..+++++.++
T Consensus 157 ~~~ei~~~l~ 166 (709)
T 4fn5_A 157 VVEQIKKRLG 166 (709)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHhhhhcc
Confidence 6667766654
No 188
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.50 E-value=5.8e-15 Score=135.35 Aligned_cols=127 Identities=22% Similarity=0.283 Sum_probs=89.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhccccee----------eccCC------CCceEE---EEEEEcCCeEEEEeCCCCCCcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV----------RTSDK------PGLTQT---INFFKLGTKLCLVDLPGYGFAY 152 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~----------~~~~~------~g~t~~---~~~~~~~~~~~liDTpG~~~~~ 152 (237)
..+|+|+|+.++|||||..+|+-..+.. .+.+. +|.|.. +.+.+.+..++|+||||+.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D-- 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD-- 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH--
Confidence 4589999999999999999987432110 01111 122221 23444578899999999875
Q ss_pred cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
+.....+.+..+|++++|+|+..+++.+...+++.+...++|.++++||+|.... +.....+++++.+
T Consensus 80 -----------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a-~~~~~~~~i~~~l 147 (638)
T 3j25_A 80 -----------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI-DLSTVYQDIKEKL 147 (638)
T ss_dssp -----------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC-CSHHHHHHHHHTT
T ss_pred -----------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC-CHHHHHHHHHHHh
Confidence 2222223333499999999999999999999999999999999999999998643 2334455555443
No 189
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.49 E-value=8.4e-14 Score=125.35 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=71.3
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE---------E--EcCCeEEEEeCCCCCCcccchHHH
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---------F--KLGTKLCLVDLPGYGFAYAKEEVK 158 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~---------~--~~~~~~~liDTpG~~~~~~~~~~~ 158 (237)
....+|+++|.+|||||||+|+|++........+..|.+..... . ..+..+.+|||||......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~----- 113 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA----- 113 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-----
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-----
Confidence 45579999999999999999999987321111122222111110 0 0146799999999543211
Q ss_pred HHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc--CCcEEEEEecCCCCCh
Q 026538 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFP 218 (237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~Dl~~~ 218 (237)
+...++.. +|++++|+|++.. .....++..+... +.|+++|+||+|+...
T Consensus 114 -----~~~~~l~~---~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 114 -----SHQFFMTR---SSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPS 165 (535)
T ss_dssp -----TCHHHHHS---SEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTT
T ss_pred -----HHHHHccC---CcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccc
Confidence 11222332 8999999998753 4445677777664 4899999999999753
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=121.95 Aligned_cols=121 Identities=20% Similarity=0.223 Sum_probs=67.8
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccc-----ceeeccCCC-------------------------------------Cc
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKP-------------------------------------GL 127 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~~-------------------------------------g~ 127 (237)
...+.|+|+|++|||||||+|+|++.. .+......+ |+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 457899999999999999999999631 112222111 11
Q ss_pred eEEEE-----EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc
Q 026538 128 TQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS 202 (237)
Q Consensus 128 t~~~~-----~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~ 202 (237)
|++.. +...+..+.++||||+..+ . ..+ ...+|++++|+|++.+... ..+.. .-.
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~------~~l-------~~~~d~vl~V~d~~~~~~~---~~i~~-~il 211 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---E------FAV-------ADMVDMFVLLLPPAGGDEL---QGIKR-GII 211 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---H------HHH-------HTTCSEEEEEECCC----------------C
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---h------hhH-------HhhCCEEEEEEcCCcchhH---HHhHH-HHH
Confidence 11100 0013567999999998632 1 111 1238999999998754221 11111 113
Q ss_pred CCcEEEEEecCCCCChHHHHHHHHHHHH
Q 026538 203 QTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (237)
Q Consensus 203 ~~piilv~NK~Dl~~~~~~~~~~~~l~~ 230 (237)
..|.++|+||+|+.+..........+..
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~ 239 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPARRIQAEYVS 239 (349)
T ss_dssp CSCSEEEECCCSGGGHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhHHHHHHHHHH
Confidence 5688999999999765443333444433
No 191
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.47 E-value=3.4e-14 Score=111.10 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=64.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCce---EEEEEEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t---~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (237)
.++|+++|.+|||||||+|++++... ...+..++++ ....+...+ ..+.+|||+|..... . .+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~--~-------~~~~ 75 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHD-SMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN--E-------WLHD 75 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSC-CC----GGGCTTEEEEEEEETTEEEEEEEECCCCC------C-------TTGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcC-CcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh--h-------hHHH
Confidence 46999999999999999999997522 2222222221 112222223 346789999964310 0 1112
Q ss_pred HHHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh----cCCcEEEEEecCCCCC
Q 026538 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~piilv~NK~Dl~~ 217 (237)
.|+.. +|++++|+|....-+... ..+...+.. .+.|+++|+||+|+..
T Consensus 76 ~~~~~---~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 76 HCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp GHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred hhccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 22222 799999999875322111 233333332 3689999999999863
No 192
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.46 E-value=2e-13 Score=107.09 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=68.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcC--CeEEEEeCCCCCCcccchHHHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (237)
.++|+++|++|||||||+|+|++........+..+...... +...+ ..+.+|||||..... .+...+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR----------RITSAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTT----------CCCHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhh----------hhhHHH
Confidence 36899999999999999999999742111222222222221 22223 357789999964311 111222
Q ss_pred HhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
+.. ++++++|+|.....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 75 YRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp HTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred Hhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 332 899999999875322222 234444432 3689999999999863
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.41 E-value=4.8e-13 Score=114.21 Aligned_cols=86 Identities=23% Similarity=0.266 Sum_probs=54.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EEc------------------CCeEEEEeCCCCCCcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL------------------GTKLCLVDLPGYGFAY 152 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~~------------------~~~~~liDTpG~~~~~ 152 (237)
.+|+++|.+|||||||+|+|++.. ..+++.|++|.+... ... +..+.+|||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 589999999999999999999984 566777777765421 111 2569999999986531
Q ss_pred cchHHHHHHHHHHHHHHhccccccEEEEEEeCCC
Q 026538 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (237)
... ..+...++.....+|++++|+|++.
T Consensus 81 ~~~------~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKG------EGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHH------GGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccc------chHHHHHHHHHHhcCeEEEEEecCC
Confidence 110 1111222222334999999999875
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.40 E-value=3e-12 Score=107.11 Aligned_cols=139 Identities=22% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCC------CceEEE---EE----EEcCCeEEEEeCCCCCCccc----
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTI---NF----FKLGTKLCLVDLPGYGFAYA---- 153 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~------g~t~~~---~~----~~~~~~~~liDTpG~~~~~~---- 153 (237)
-.++|+++|++|+|||||+|+|++.. ....+..+ ..|... .+ ......+.+|||||++....
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~-~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTD-LYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCC-ccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34689999999999999999998762 12211110 011111 11 11234689999999853211
Q ss_pred chHHHHHHHHHHHHHHhccc----------cccEEEEEEeCC-CCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHH
Q 026538 154 KEEVKDAWEELVKEYVSTRV----------SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 222 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~----------~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~ 222 (237)
...+..........|+.... .+++++|+++.. .++...+.++++.+.. ..|+++|+||+|+.+..++.
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV~~K~Dl~~~~e~~ 174 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPVIAKADTLTLKERE 174 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEEECCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh-cCCEEEEEEeCCCCCHHHHH
Confidence 11111111122223333221 134466666654 4587777666666643 57999999999998876654
Q ss_pred HHHHHHHHH
Q 026538 223 RRAMQIEEV 231 (237)
Q Consensus 223 ~~~~~l~~~ 231 (237)
...+.+.+.
T Consensus 175 ~~~~~~~~~ 183 (301)
T 2qnr_A 175 RLKKRILDE 183 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.40 E-value=8e-13 Score=113.11 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=72.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc-----ceeeccCCCCceE-------------------EEEE-------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQ-------------------TINF------------- 133 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~~g~t~-------------------~~~~------------- 133 (237)
..++|+++|.+|+|||||+++|.... .+..+...++.+. ...+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45799999999999999999987431 2222221111111 0000
Q ss_pred ----------EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcC
Q 026538 134 ----------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203 (237)
Q Consensus 134 ----------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~ 203 (237)
...+..+.||||||+... . ..+. ..+|++++|+|+..+..... +...+ ..
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~------~~~~-------~~aD~vl~V~d~~~~~~~~~--l~~~~--~~ 217 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQS---E------VAVA-------NMVDTFVLLTLARTGDQLQG--IKKGV--LE 217 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSH---H------HHHH-------TTCSEEEEEEESSTTCTTTT--CCTTS--GG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcH---H------HHHH-------HhCCEEEEEECCCCCccHHH--HHHhH--hh
Confidence 012578999999998641 0 1111 33999999999764322111 00111 23
Q ss_pred CcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 204 TKYQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 204 ~piilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
.|+++|+||+|+.+........+.+.+.+
T Consensus 218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l 246 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEARLAARELSAAI 246 (355)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHHHHHHHHHHHHH
Confidence 69999999999987666655666666554
No 196
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.39 E-value=8.2e-13 Score=103.06 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=68.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE-EEEcCC--eEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGT--KLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~-~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+++|++|||||||+++|++........+..+...... +...+. .+.+|||||..... .+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~~~ 97 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----------AITSA 97 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----------CCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----------hhhHH
Confidence 347999999999999999999998742111222222222221 222233 45679999975421 11222
Q ss_pred HHhccccccEEEEEEeCCCCCChhH-HHHHHHHHh---cCCcEEEEEecCCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~piilv~NK~Dl~~ 217 (237)
++.. ++.+++|+|.....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 98 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 98 YYRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred Hhhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 3322 788999999764322111 234443332 3689999999999853
No 197
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.36 E-value=1.9e-12 Score=112.67 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=73.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EEEc--CCeEEEEeCCCCCCcccc-hHHHHHHHHHHH
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL--GTKLCLVDLPGYGFAYAK-EEVKDAWEELVK 166 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~~~--~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 166 (237)
...|+|+|++|||||||+|+|++.. ..+.+.+.+|.... .... ...+.++||||+.+.... ..+ ..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L-------~~ 227 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGL-------GL 227 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCS-------CH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhh-------hH
Confidence 3578999999999999999999884 34556666654432 2222 267999999998642111 001 11
Q ss_pred HHHhccccccEEEEEEeCC-CCCChhHHHHHHHHHh-----cCCcEEEEEecCCCCCh
Q 026538 167 EYVSTRVSLKRVCLLIDTK-WGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~-----~~~piilv~NK~Dl~~~ 218 (237)
.++.....++.+++++|.+ ..+.. ...+.+.+.. ...|.++|+||+|+...
T Consensus 228 ~fl~~~era~~lL~vvDls~~~~~~-ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAADEPLKT-LETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp HHHHHHTSSSEEEEEEETTSCHHHH-HHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred HHHHHHHHHHhhhEEeCCccCCHHH-HHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 1222234489999999986 11111 1112222221 25899999999999865
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.36 E-value=1.2e-12 Score=111.35 Aligned_cols=123 Identities=19% Similarity=0.140 Sum_probs=71.2
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccc-----ceeeccCCCCceEE--------------------EE-E----------
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQT--------------------IN-F---------- 133 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~~g~t~~--------------------~~-~---------- 133 (237)
.....|+++|++|+|||||+|.|++.. .+..++..++++.. +. .
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 355789999999999999999997421 22333222222210 00 0
Q ss_pred -----------EEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc
Q 026538 134 -----------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS 202 (237)
Q Consensus 134 -----------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~ 202 (237)
...+..+.||||||+.+.. . .. . ..+|++++|+|+..+..... +.. ...
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~--~-------~~----~---~~aD~vl~Vvd~~~~~~~~~---l~~-~~~ 193 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE--T-------EV----A---RMVDCFISLQIAGGGDDLQG---IKK-GLM 193 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH--H-------HH----H---TTCSEEEEEECC------CC---CCH-HHH
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH--H-------HH----H---HhCCEEEEEEeCCccHHHHH---HHH-hhh
Confidence 0126789999999986420 0 01 1 34999999999864321110 000 112
Q ss_pred CCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 026538 203 QTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232 (237)
Q Consensus 203 ~~piilv~NK~Dl~~~~~~~~~~~~l~~~l 232 (237)
+.|.++|+||+|+....+.....+.+++.+
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l 223 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESAL 223 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHH
Confidence 468899999999987655555555555433
No 199
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.35 E-value=4.5e-12 Score=103.53 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=32.1
Q ss_pred cccEEEEEEeCCCC--CChhH-HHHHHHHH----hcCCcEEEEEecCCCCChHHH
Q 026538 174 SLKRVCLLIDTKWG--VKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 174 ~~d~v~~vvd~~~~--~~~~~-~~~~~~l~----~~~~piilv~NK~Dl~~~~~~ 221 (237)
.+|++++|+|+++. .+... ..++..+. ..++|+++|+||+|+.....+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v 216 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI 216 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence 38999999998764 33322 23343332 247999999999999765544
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.33 E-value=1.3e-12 Score=112.07 Aligned_cols=85 Identities=24% Similarity=0.287 Sum_probs=55.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEE--EE----------------------EcCCeEEEEeCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FF----------------------KLGTKLCLVDLPGY 148 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~--~~----------------------~~~~~~~liDTpG~ 148 (237)
++|+++|.||||||||+|+|++.. ..+.+.+++|.+.+ .. ..+..+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~--~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN--ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH--TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 579999999999999999999873 34556666554321 11 12457999999998
Q ss_pred CCcccc-hHHHHHHHHHHHHHHhccccccEEEEEEeCCC
Q 026538 149 GFAYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (237)
Q Consensus 149 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (237)
...... ..+.. .++.....+|++++|+|++.
T Consensus 80 ~~~a~~~~~lg~-------~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGN-------QFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTH-------HHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHH-------HHHHHHHhCCEEEEEEECCC
Confidence 653221 11211 12222233999999999874
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.28 E-value=5.2e-12 Score=103.06 Aligned_cols=122 Identities=17% Similarity=0.183 Sum_probs=70.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHh-----cccceeeccCCCCc----------------eEEEE-----------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGL----------------TQTIN----------------- 132 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~-----~~~~~~~~~~~~g~----------------t~~~~----------------- 132 (237)
..+.+++.|.+|||||||++.|. +. .+..+..-++. +.+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~-~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTS-CEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 34677889999999999999998 55 44444322221 00000
Q ss_pred ------------EEEcCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHH-H----
Q 026538 133 ------------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-L---- 195 (237)
Q Consensus 133 ------------~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~-~---- 195 (237)
....+..+.||||||..+.. . +..+.......... +++++++|+.......+.. .
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~---~----~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~ 163 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETF---L----FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA 163 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH---H----HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchh---h----hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence 00013479999999974310 0 00111111122244 8899999986554444322 1
Q ss_pred HHHHHhcCCcEEEEEecCCCCChHHH
Q 026538 196 ISLMERSQTKYQVVLTKTDTVFPIDV 221 (237)
Q Consensus 196 ~~~l~~~~~piilv~NK~Dl~~~~~~ 221 (237)
.......+.|+++|+||+|+.+..+.
T Consensus 164 ~~~~~~~~~p~~iv~NK~D~~~~~~~ 189 (262)
T 1yrb_A 164 LLIDLRLGATTIPALNKVDLLSEEEK 189 (262)
T ss_dssp HHHHHHHTSCEEEEECCGGGCCHHHH
T ss_pred HHHhcccCCCeEEEEecccccccccH
Confidence 12223347899999999999876543
No 202
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.24 E-value=5.7e-12 Score=104.45 Aligned_cols=61 Identities=33% Similarity=0.610 Sum_probs=42.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~ 152 (237)
..++|+++|.||+|||||+|+|++. ....+++.+|+|++......+..+.++||||+..+.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK 179 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence 4579999999999999999999998 556788999999988777678889999999997653
No 203
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.17 E-value=2.6e-10 Score=101.34 Aligned_cols=117 Identities=16% Similarity=0.227 Sum_probs=68.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHh------cccceeeccC-C--CCc--------eE-EEEEEE-----------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSD-K--PGL--------TQ-TINFFK----------------- 135 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~------~~~~~~~~~~-~--~g~--------t~-~~~~~~----------------- 135 (237)
...+|+++|.+||||||+++.|+ |. .+..++. . ++. ++ .+.++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 34588999999999999999999 54 3333322 1 110 00 011111
Q ss_pred ---cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcE-EEEEe
Q 026538 136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT 211 (237)
Q Consensus 136 ---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~pi-ilv~N 211 (237)
.+..+.||||||.... ...+......+.. +. .+|.+++|+|+..+.. .....+.+... +|+ .+|+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~--~~~l~~el~~~~~-~i----~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlN 248 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ--EDSLFEEMLQVAN-AI----QPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVT 248 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT--CHHHHHHHHHHHH-HH----CCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEE
T ss_pred HHHCCCcEEEEeCCCCccc--chhHHHHHHHHHh-hh----cCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEe
Confidence 3568999999997642 1111111112111 11 3899999999987643 33444444433 675 89999
Q ss_pred cCCCCCh
Q 026538 212 KTDTVFP 218 (237)
Q Consensus 212 K~Dl~~~ 218 (237)
|+|....
T Consensus 249 K~D~~~~ 255 (504)
T 2j37_W 249 KLDGHAK 255 (504)
T ss_dssp CTTSCCC
T ss_pred CCccccc
Confidence 9998743
No 204
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=106.28 Aligned_cols=88 Identities=23% Similarity=0.197 Sum_probs=45.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEE--c------------------CCeEEEEeCCCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L------------------GTKLCLVDLPGYGF 150 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~--~------------------~~~~~liDTpG~~~ 150 (237)
...+|+++|.+|||||||+|+|++.. ..+++.|++|.+..... . +..+.+|||||+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~--~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQ--ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC--ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 44689999999999999999999983 36777888876542211 1 23599999999865
Q ss_pred cccchHHHHHHHHHHHHHHhccccccEEEEEEeCCC
Q 026538 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (237)
..... ..+...++.....+|++++|+|++.
T Consensus 99 ~as~~------~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAHNG------QGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccchh------hHHHHHHHHHHHhcCeEEEEEecCC
Confidence 32110 1111122222334999999999863
No 205
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.15 E-value=1.5e-11 Score=97.79 Aligned_cols=107 Identities=9% Similarity=-0.007 Sum_probs=63.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc----ceeeccCCCCceEE-----------EEE------------------EEcC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQT-----------INF------------------FKLG 137 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~----~~~~~~~~~g~t~~-----------~~~------------------~~~~ 137 (237)
..++|+++|.+|||||||+|+|++.. ....+...++++.+ ... ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34799999999999999999998651 12223323332110 000 0123
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCC
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~ 217 (237)
..+.+|||+|.... .. ++. ...+.+++|+|+..+.... .......+.|+++|+||+|+.+
T Consensus 109 ~d~iiidt~G~~~~--~~------------~~~--~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 109 CDLLLIENVGNLIC--PV------------DFD--LGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp CSEEEEEEEEBSSG--GG------------GCC--CSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHH
T ss_pred CCEEEEeCCCCCCC--Cc------------hhc--cccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCc
Confidence 56888998884210 00 010 1257889999987653221 1112223589999999999854
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.10 E-value=1.4e-10 Score=98.38 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
....++++|++|||||||+|.|++
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 207
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.08 E-value=3.7e-11 Score=98.53 Aligned_cols=59 Identities=27% Similarity=0.544 Sum_probs=42.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEEEEcCCeEEEEeCCCCCCcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~liDTpG~~~~~ 152 (237)
.+++++|.+|+|||||+|+|++. ....+++.+|+|+.......+..+.+|||||+..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccCc
Confidence 69999999999999999999998 445678889999887777777889999999987653
No 208
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.01 E-value=4.8e-10 Score=101.27 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=58.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccC-CCCceEEEEEE------EcCCeEEEEeCCCCCCccc--chHHHHHH
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFF------KLGTKLCLVDLPGYGFAYA--KEEVKDAW 161 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~-~~g~t~~~~~~------~~~~~~~liDTpG~~~~~~--~~~~~~~~ 161 (237)
..++|+|+|.||+|||||+|+|+|......++. ..++|..+..+ ..+..+.|+||||+.+... .......+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~f 116 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF 116 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHH
Confidence 457899999999999999999999842112222 22444444332 1367899999999986432 11111111
Q ss_pred HHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHH
Q 026538 162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 198 (237)
Q Consensus 162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~ 198 (237)
. +...+ ++ ++|+|+..++...+...+..
T Consensus 117 -a-la~ll-----ss--~lv~n~~~~i~~~dl~~l~~ 144 (592)
T 1f5n_A 117 -A-LAVLL-----SS--TFVYNSIGTINQQAMDQLYY 144 (592)
T ss_dssp -H-HHHHH-----CS--EEEEEEESCSSHHHHHTTHH
T ss_pred -H-HHHHh-----cC--eEEEECCCCccHHHHHHHHH
Confidence 0 11111 22 56677666777777554443
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.01 E-value=1.2e-10 Score=100.55 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=59.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcccceeeccCCCCceEEEEE--EE-cC-----------------CeEEEEeCCCCCC
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-LG-----------------TKLCLVDLPGYGF 150 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~g~t~~~~~--~~-~~-----------------~~~~liDTpG~~~ 150 (237)
...+|+++|.+|||||||+|+|++. ..+.+++.|++|.+... .. .+ ..+.+|||||+..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4569999999999999999999997 43477888887765321 11 11 3589999999765
Q ss_pred cccc-hHHHHHHHHHHHHHHhccccccEEEEEEeCCC
Q 026538 151 AYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (237)
Q Consensus 151 ~~~~-~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (237)
..+. +.+.. .++.....+|.+++|+|+..
T Consensus 98 ~~s~~e~L~~-------~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGN-------AFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCH-------HHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHH-------HHHHHHHHHHHHHHHHhccc
Confidence 3222 11211 12222234899999999753
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.94 E-value=4.6e-09 Score=91.21 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=69.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcccce---eeccCCCCceEEEEEEEc--CCeEEEEeCCCCCCcccchHHHHHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGV---VRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~---~~~~~~~g~t~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (237)
..++|+|++|||||||+|.|+|.... ........+|+....+.. ...++++|+||+... ...+. .++..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~----~~L~~ 143 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST--NFPPD----TYLEK 143 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS--SCCHH----HHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch--HHHHH----HHHHH
Confidence 58999999999999999999994211 111111112222122222 236899999998642 11122 22221
Q ss_pred HHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
+ .....+..++ ++..+ .+.....+...+...+.|+++|+||.|++
T Consensus 144 ~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 144 M--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp T--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred c--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 1 1122355554 76654 56777788888888889999999999975
No 211
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.93 E-value=1.7e-08 Score=92.10 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=48.1
Q ss_pred CeEEEEeCCCCCCcc---cchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCC-hhHHHHHHHHHhcCCcEEEEEecC
Q 026538 138 TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTKYQVVLTKT 213 (237)
Q Consensus 138 ~~~~liDTpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-~~~~~~~~~l~~~~~piilv~NK~ 213 (237)
..+.++|.||+.... ........+..++..|.... ..++++++++...+. .....+++.+...+.+.++|+||+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~--~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ--ETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSS--SCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcC--CCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence 569999999976521 12223445566676665442 355666666543332 333566666666788999999999
Q ss_pred CCCCh
Q 026538 214 DTVFP 218 (237)
Q Consensus 214 Dl~~~ 218 (237)
|++..
T Consensus 225 Dlv~~ 229 (608)
T 3szr_A 225 DLVDK 229 (608)
T ss_dssp GGSSS
T ss_pred hhcCc
Confidence 99854
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.80 E-value=1.3e-07 Score=82.51 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=67.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc-----cceeecc-CC--CCc---------eEEEEEEE-------------------
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTS-DK--PGL---------TQTINFFK------------------- 135 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~-----~~~~~~~-~~--~g~---------t~~~~~~~------------------- 135 (237)
...|+++|.+|+||||++..|... ..+..+. +. ++. ...+.++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 457789999999999999998731 1222221 10 000 00000110
Q ss_pred -cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCC
Q 026538 136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (237)
Q Consensus 136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D 214 (237)
.+..+.|+||||.... ..........+. . ...+|.+++|+|+..+ .........+...-.+..+|+||+|
T Consensus 180 ~~~~DvVIIDTaGrl~~--d~~lm~el~~i~-~----~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE--DKALIEEMKQIS-N----VIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp HTTCSEEEEECCCCSSC--CHHHHHHHHHHH-H----HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred hCCCCEEEEECCCcccc--hHHHHHHHHHHH-H----hhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCC
Confidence 1478999999996542 111111122211 1 1127899999998754 3334444555554456779999999
Q ss_pred CCChH
Q 026538 215 TVFPI 219 (237)
Q Consensus 215 l~~~~ 219 (237)
.....
T Consensus 251 ~~~~g 255 (443)
T 3dm5_A 251 GSAKG 255 (443)
T ss_dssp SCSSH
T ss_pred Ccccc
Confidence 87543
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.74 E-value=4.5e-08 Score=85.59 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc-----ceeeccCC------------------------CCceEEEE-E------EE
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK------------------------PGLTQTIN-F------FK 135 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~~~------------------------~g~t~~~~-~------~~ 135 (237)
...|+++|.+|+||||+++.|.... .+..++.- .+++.+.. . ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998631 12211110 00222210 0 00
Q ss_pred cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCC-c-EEEEEecC
Q 026538 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-K-YQVVLTKT 213 (237)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p-iilv~NK~ 213 (237)
.+..+.|+||||.... .. .....+ .. +.....+|.+++|+|+..+. ......+.+.. .. | ..+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~--~~---~l~~~l-~~-i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE--EK---GLLEEM-KQ-IKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSS--HH---HHHHHH-HH-TTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccc--cH---HHHHHH-HH-HHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCC
Confidence 3567999999997541 11 111222 11 22333489999999987553 22333333333 35 6 88999999
Q ss_pred CCCCh
Q 026538 214 DTVFP 218 (237)
Q Consensus 214 Dl~~~ 218 (237)
|....
T Consensus 249 D~~~~ 253 (432)
T 2v3c_C 249 DGSAK 253 (432)
T ss_dssp SSCST
T ss_pred CCccc
Confidence 98643
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.68 E-value=2.2e-08 Score=79.50 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..++|+++|.+|||||||+++|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999875
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.64 E-value=2.7e-07 Score=80.52 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=65.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc-----ceeecc-C---------------CCCceE-------EEE--------EE-
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-D---------------KPGLTQ-------TIN--------FF- 134 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~-~---------------~~g~t~-------~~~--------~~- 134 (237)
...|+++|++|+||||++..|.... .+..++ + ..+... +.. ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4577889999999999999987321 111111 1 001000 000 00
Q ss_pred EcCCeEEEEeCCCCCCc-ccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecC
Q 026538 135 KLGTKLCLVDLPGYGFA-YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213 (237)
Q Consensus 135 ~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~ 213 (237)
..+..+.|+||||.... .... .......+... . ..+.+++|+|+..+ .......+.+...-.+..+|+||+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~-lm~el~~i~~~-~----~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKl 248 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETK-LLEEMKEMYDV-L----KPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKM 248 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTH-HHHHHHHHHHH-H----CCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECG
T ss_pred hcCCCEEEEECCCCccccCCHH-HHHHHHHHHHh-h----CCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecc
Confidence 01567999999996430 1111 11112222211 1 26899999998754 333445555554445688999999
Q ss_pred CCCCh
Q 026538 214 DTVFP 218 (237)
Q Consensus 214 Dl~~~ 218 (237)
|....
T Consensus 249 D~~a~ 253 (433)
T 3kl4_A 249 DGTAK 253 (433)
T ss_dssp GGCSC
T ss_pred ccccc
Confidence 97643
No 216
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.48 E-value=1.8e-07 Score=79.12 Aligned_cols=69 Identities=10% Similarity=0.061 Sum_probs=43.4
Q ss_pred cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCC---------CCChh--HHHHHHHHHh---
Q 026538 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW---------GVKPR--DHELISLMER--- 201 (237)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~---------~~~~~--~~~~~~~l~~--- 201 (237)
.+..+.+|||+|.. .. ..+...|+.. ++++++|+|.+. ..... ...++..+..
T Consensus 159 ~~v~l~iwDtaGQe------~~----R~~w~~yy~~---a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGGQR------SE----RKXWVSFFSD---VDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCSCH------HH----HHHHHTTSCS---CSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeccccCCCcc------cc----cccHHHHhcc---CCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 36789999999942 22 3333445544 999999999762 11111 1233333332
Q ss_pred -cCCcEEEEEecCCCCC
Q 026538 202 -SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 202 -~~~piilv~NK~Dl~~ 217 (237)
.++|+++++||+|+..
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 3689999999999853
No 217
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.42 E-value=4.4e-07 Score=76.35 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=42.4
Q ss_pred cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCC-------CCCC-hh---HHHHHHHHHh---
Q 026538 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVK-PR---DHELISLMER--- 201 (237)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~-------~~~~-~~---~~~~~~~l~~--- 201 (237)
.+..+.+|||+|.. . +......|+.. ++++++|+|.+ +.-. .. ...+++.+..
T Consensus 165 ~~v~l~iwDtgGQe------~----~R~~w~~yf~~---~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 165 QSVIFRMVDVGGQR------S----ERRKWIHCFEN---VTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp TTEEEEEEEECCSH------H----HHTTGGGGCSS---CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred eceeeEEEEcCCch------h----HHHHHHHHhCC---CCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 46779999999952 1 22233344443 89999999754 1111 11 1233333332
Q ss_pred -cCCcEEEEEecCCCCC
Q 026538 202 -SQTKYQVVLTKTDTVF 217 (237)
Q Consensus 202 -~~~piilv~NK~Dl~~ 217 (237)
.++|+++++||+|+..
T Consensus 232 ~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLE 248 (327)
T ss_dssp GTTCEEEEEEECHHHHH
T ss_pred cCCceEEEEEECchhhh
Confidence 3689999999999853
No 218
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.31 E-value=1.4e-06 Score=76.32 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|+|++++|||||+|.|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3457899999999999999999974
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.27 E-value=7.5e-06 Score=68.02 Aligned_cols=119 Identities=20% Similarity=0.262 Sum_probs=64.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc-----ceeecc-CC--CC-------------c-------eEEE--------EEEE
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-DK--PG-------------L-------TQTI--------NFFK 135 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~~-~~--~g-------------~-------t~~~--------~~~~ 135 (237)
...++++|++|+||||++..|.+.. .+..+. +. ++ . ..+. ....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 3467889999999999999887421 111111 10 00 0 0000 0000
Q ss_pred -cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEecC
Q 026538 136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKT 213 (237)
Q Consensus 136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~ 213 (237)
.++.+.++||||.......+........+ .... .+|.+++|+|+..+ .......+.+.. ..| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i-~~~~----~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNI-YEAI----KPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHH-HHHH----CCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHH-HHHh----cCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCC
Confidence 35679999999975300011111111111 1111 28999999998643 233334444443 366 77899999
Q ss_pred CCCCh
Q 026538 214 DTVFP 218 (237)
Q Consensus 214 Dl~~~ 218 (237)
|....
T Consensus 250 D~~~~ 254 (297)
T 1j8m_F 250 DGTAK 254 (297)
T ss_dssp GGCTT
T ss_pred CCCcc
Confidence 97643
No 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.26 E-value=1.1e-05 Score=71.17 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=63.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc-----ceeec-cCCCCc-----------eEEEEEEE------------------
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRT-SDKPGL-----------TQTINFFK------------------ 135 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~-~~~~g~-----------t~~~~~~~------------------ 135 (237)
..-.++|+|.+|||||||++.|.+.. .+... .+.... -..+.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 34478999999999999999998642 11111 111000 00011110
Q ss_pred --cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhc-cccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEec
Q 026538 136 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST-RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (237)
Q Consensus 136 --~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK 212 (237)
.+..+.|+||+|.... ..........+....... ....+-+++++|+..+ ......++.+...-....+|+||
T Consensus 372 ~~~~~DvVLIDTaGrl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHTTCSEEEECCCCSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCCSEEEEEC
T ss_pred HhcCCCEEEEeCCCccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCCCEEEEEc
Confidence 1466899999997542 111111222222211111 1124678899997644 22333444444322234578999
Q ss_pred CCCC
Q 026538 213 TDTV 216 (237)
Q Consensus 213 ~Dl~ 216 (237)
.|-.
T Consensus 448 LD~t 451 (503)
T 2yhs_A 448 LDGT 451 (503)
T ss_dssp GGGC
T ss_pred CCCc
Confidence 9964
No 221
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.26 E-value=5.6e-06 Score=72.34 Aligned_cols=115 Identities=19% Similarity=0.170 Sum_probs=61.8
Q ss_pred CCEEEEecCCCCchhhHHHHHh-------cccceeeccCCC---Cce-----------EEEE-----------------E
Q 026538 92 LPEIAFAGRSNVGKSSMLNALT-------RQWGVVRTSDKP---GLT-----------QTIN-----------------F 133 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~-------~~~~~~~~~~~~---g~t-----------~~~~-----------------~ 133 (237)
...|+++|.+|+||||+...|. |. .+..+..-+ +.. .++. .
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 3477889999999999998887 33 222211111 100 0000 0
Q ss_pred EE-cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCc-EEEEEe
Q 026538 134 FK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLT 211 (237)
Q Consensus 134 ~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~N 211 (237)
.. .++.+.|+||||.... ..........+ .....++.+++|+|+..+. ......+.+.. ..+ .-+|+|
T Consensus 179 ~~~~~~D~VIIDTpG~l~~--~~~l~~~L~~~-----~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVln 248 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHV--DEAMMDEIKQV-----HASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVLT 248 (433)
T ss_dssp HHHTTCSEEEEECCCCCTT--CHHHHHHHHHH-----HHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEEE
T ss_pred HHhCCCCEEEEECCCcccc--cHHHHHHHHHH-----HHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEEe
Confidence 01 2567999999996431 11111111111 1111278999999987552 22333333332 244 357999
Q ss_pred cCCCCC
Q 026538 212 KTDTVF 217 (237)
Q Consensus 212 K~Dl~~ 217 (237)
|+|...
T Consensus 249 K~D~~~ 254 (433)
T 2xxa_A 249 KVDGDA 254 (433)
T ss_dssp CTTSSS
T ss_pred cCCCCc
Confidence 999753
No 222
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.17 E-value=4e-07 Score=75.97 Aligned_cols=57 Identities=33% Similarity=0.523 Sum_probs=34.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcccceeeccCC-------CCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~-------~g~t~~~~~~~~~~~~~liDTpG~~~ 150 (237)
...++++|++|||||||+|+|.+... ...+.. .++|+........ ...++||||+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~ 236 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS 236 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred CCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence 45899999999999999999998632 122221 2344433333333 358999999865
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.10 E-value=8.4e-06 Score=68.67 Aligned_cols=116 Identities=22% Similarity=0.241 Sum_probs=62.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc-----ceeec-cCC--CCc---------eEEEEEEE-------------------
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRT-SDK--PGL---------TQTINFFK------------------- 135 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~-----~~~~~-~~~--~g~---------t~~~~~~~------------------- 135 (237)
.-.++++|++||||||+++.|.+.. .+... .+. ++. ...+.+..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 4478999999999999999998642 11110 010 000 00000110
Q ss_pred -cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCC
Q 026538 136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (237)
Q Consensus 136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D 214 (237)
.+..+.++||+|..... .........+. ..+ .+|-.++++|+..+ ......++.+........+++||.|
T Consensus 209 ~~~~d~vliDtaG~~~~~--~~l~~eL~~i~-ral----~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 209 ARGIDVVLIDTAGRSETN--RNLMDEMKKIA-RVT----KPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHTCSEEEEEECCSCCTT--TCHHHHHHHHH-HHH----CCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred hccchhhHHhhccchhHH--HHHHHHHHHHH-HHh----cCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 14568899999975321 11111122221 111 16889999997644 2333444444433234578889999
Q ss_pred CC
Q 026538 215 TV 216 (237)
Q Consensus 215 l~ 216 (237)
..
T Consensus 280 ~~ 281 (328)
T 3e70_C 280 AD 281 (328)
T ss_dssp GC
T ss_pred Cc
Confidence 64
No 224
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.06 E-value=6.6e-06 Score=68.60 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-.|+++|++|||||||++.|.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 458899999999999999999853
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.04 E-value=0.00012 Score=61.37 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
....|+++|.+|+||||++..|.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344788999999999999988874
No 226
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.02 E-value=6.5e-06 Score=68.54 Aligned_cols=55 Identities=33% Similarity=0.428 Sum_probs=35.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCCC-------CceEEEEEEEcCCeEEEEeCCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYG 149 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~~-------g~t~~~~~~~~~~~~~liDTpG~~ 149 (237)
..++++|++|||||||+|+|. ... ...+... .+|+..........-.++||||+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 478999999999999999998 632 2222221 244433333332345789999975
No 227
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.00 E-value=3.2e-05 Score=64.46 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+++|++|+||||++..|.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 346889999999999999988753
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.97 E-value=2.9e-06 Score=72.19 Aligned_cols=58 Identities=34% Similarity=0.408 Sum_probs=36.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCC---CC----ceEEEEEEEcCCeEEEEeCCCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---PG----LTQTINFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~---~g----~t~~~~~~~~~~~~~liDTpG~~~ 150 (237)
-.++|+|++|||||||+|.|++.......+.. .| +|.............++||||+.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 47899999999999999999987420111111 12 333334444444457899999644
No 229
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.89 E-value=6.6e-06 Score=68.46 Aligned_cols=57 Identities=35% Similarity=0.434 Sum_probs=35.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeeccCC-------CCceEEEEEEEcCCeEEEEeCCCCCC
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF 150 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~~~-------~g~t~~~~~~~~~~~~~liDTpG~~~ 150 (237)
-.++++|++|||||||+|.|.+... ...+.. ..+|...........-.++|+||+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 4789999999999999999998742 111111 12333222222223457899999754
No 230
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.81 E-value=0.00017 Score=62.63 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=19.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
...|+++|.+|+||||++..|.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34678889999999999988874
No 231
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.78 E-value=7.1e-05 Score=61.62 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=40.2
Q ss_pred ccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHH
Q 026538 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (237)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l 228 (237)
....+|+|++|+|+..+.......+-+.+ .++|+++|+||+|+.+....+...+.+
T Consensus 20 ~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 20 KLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp HGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34449999999999887666544444444 468999999999999865554444443
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.72 E-value=6e-05 Score=62.52 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
...++++|++|+||||++..|.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999998874
No 233
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.65 E-value=2.3e-05 Score=61.12 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCCCEEEEecCCCCchhhHHHHHhccc
Q 026538 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 90 ~~~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.....|+|+|++|||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345578999999999999999999763
No 234
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.64 E-value=3.6e-05 Score=63.99 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=45.4
Q ss_pred CeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC-Chh-HHHHHHHHHhcCCcEEEEEecCCC
Q 026538 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPR-DHELISLMERSQTKYQVVLTKTDT 215 (237)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~-~~~~~~~l~~~~~piilv~NK~Dl 215 (237)
..+.+||| ...- ..+.+.|+.. +|++++|+|+..+. ... ...++..+...++|+++|+||+|+
T Consensus 63 ~~~~iwD~--qer~----------~~l~~~~~~~---ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL 127 (301)
T 1u0l_A 63 GSGVIENV--LHRK----------NLLTKPHVAN---VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDL 127 (301)
T ss_dssp SSEEEEEE--CCCS----------CEETTTTEES---CCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred CeEEEEEE--cccc----------ceeecccccc---CCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHc
Confidence 47999999 2210 1112233333 99999999988653 222 234555556668999999999999
Q ss_pred CChHHH
Q 026538 216 VFPIDV 221 (237)
Q Consensus 216 ~~~~~~ 221 (237)
.+..++
T Consensus 128 ~~~~~v 133 (301)
T 1u0l_A 128 YDEDDL 133 (301)
T ss_dssp CCHHHH
T ss_pred CCchhH
Confidence 876543
No 235
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.62 E-value=0.00036 Score=54.78 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=55.7
Q ss_pred CCCCEEEEecC-CCCchhhHHHHHhcccceeeccCCC-----CceEEEEEE----------E------------------
Q 026538 90 PDLPEIAFAGR-SNVGKSSMLNALTRQWGVVRTSDKP-----GLTQTINFF----------K------------------ 135 (237)
Q Consensus 90 ~~~~~i~lvG~-~~~GKSTLin~L~~~~~~~~~~~~~-----g~t~~~~~~----------~------------------ 135 (237)
...|+++++|+ -..=+.+|+..|.......++...+ |.-..+.+. .
T Consensus 14 ~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~~ 93 (227)
T 3l82_B 14 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS 93 (227)
T ss_dssp CCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC--------------
T ss_pred CCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhhh
Confidence 46689999997 3444668998888764333332222 111111110 0
Q ss_pred cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHH-HH---HHHHHh----cCCcEE
Q 026538 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-EL---ISLMER----SQTKYQ 207 (237)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~---~~~l~~----~~~pii 207 (237)
...++....+||-.+...+..++..|.. |+.. +|++|||||+++.-..... ++ ...+.. .++|++
T Consensus 94 ~~~k~~~~~~~~~~~~GGQ~klRplWr~----Yy~~---TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLL 166 (227)
T 3l82_B 94 AVNKMFSRHNEGDDQQGSRYSVIPQIQK----VCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166 (227)
T ss_dssp -----------------------CCHHH----HHHH---CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEE
T ss_pred hhhhcccccCCCccccCcHHHHHHHHHH----HhcC---CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEE
Confidence 0233556667763222233444444544 4444 9999999998764221122 22 222222 368999
Q ss_pred EEEecC-CCCC
Q 026538 208 VVLTKT-DTVF 217 (237)
Q Consensus 208 lv~NK~-Dl~~ 217 (237)
|..||. |+..
T Consensus 167 VlANKqqDlp~ 177 (227)
T 3l82_B 167 VLSCISQGDVK 177 (227)
T ss_dssp EEEEESSTTSC
T ss_pred EEeCCCcCccC
Confidence 999996 6653
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.62 E-value=0.0019 Score=49.72 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=42.7
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc-----CCcEEEEEe
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT 211 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~N 211 (237)
.+.+.|+|||+.... ........ +|.+++++.....- .....+++.+... +.++.+|+|
T Consensus 75 ~yD~viiD~~~~~~~--------~~~~~l~~-------ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N 138 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV--------ITSAAVMV-------SDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLIT 138 (206)
T ss_dssp TSSEEEEECCSSSSH--------HHHHHHHH-------CSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred CCCEEEEECCCCCCH--------HHHHHHHH-------CCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 467999999985421 11112222 89999999877544 4455666666543 467899999
Q ss_pred cCCCC
Q 026538 212 KTDTV 216 (237)
Q Consensus 212 K~Dl~ 216 (237)
++|..
T Consensus 139 ~~~~~ 143 (206)
T 4dzz_A 139 RKIEM 143 (206)
T ss_dssp SBCTT
T ss_pred ccCCC
Confidence 99954
No 237
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.51 E-value=2.9e-05 Score=66.26 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=40.7
Q ss_pred cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCC--------Chh---HHHHHHHHHh---
Q 026538 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPR---DHELISLMER--- 201 (237)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~~---~~~~~~~l~~--- 201 (237)
.+..+.+|||+|... .+ .....|+. .+++++||+|.+..- ... ...++..+..
T Consensus 199 ~~~~l~i~Dt~Gq~~------~r----~~w~~~f~---~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRS------ER----KRWFECFD---SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp TTEEEEEEEECC-----------------CTTSCT---TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CCeEEEEEeccchhh------hh----hhHHHHhC---CCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 367899999999632 11 22222333 389999999987521 011 1233343332
Q ss_pred -cCCcEEEEEecCCCC
Q 026538 202 -SQTKYQVVLTKTDTV 216 (237)
Q Consensus 202 -~~~piilv~NK~Dl~ 216 (237)
.+.|+++|+||+|+.
T Consensus 266 ~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLL 281 (362)
T ss_dssp GTTSEEEEEEECHHHH
T ss_pred hCCCCEEEEEEChhhh
Confidence 368999999999985
No 238
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.50 E-value=0.00098 Score=55.11 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=20.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++++|++|+||||++..|.+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346788999999999999888753
No 239
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.49 E-value=2e-05 Score=66.96 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=43.1
Q ss_pred cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCC--------h---hHHHHHHHHHh---
Q 026538 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------P---RDHELISLMER--- 201 (237)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~--------~---~~~~~~~~l~~--- 201 (237)
.+..+.+|||+|... .+..| ..|+.. +++++||+|.+..-+ . ....++..+..
T Consensus 191 ~~~~l~iwDt~GQe~------~r~~w----~~yf~~---a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 191 KDLHFKMFDVGGQRS------ERKKW----IHCFEG---VTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp TTEEEEEEEECCSGG------GGGGG----GGGCTT---CSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CCeeEEEEeCCCchh------hhHHH----HHHHhc---CCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 367799999999642 12222 233333 999999999875211 1 11234444433
Q ss_pred -cCCcEEEEEecCCCC
Q 026538 202 -SQTKYQVVLTKTDTV 216 (237)
Q Consensus 202 -~~~piilv~NK~Dl~ 216 (237)
.+.|+++|+||+|+.
T Consensus 258 ~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 258 FTDTSIILFLNKKDLF 273 (353)
T ss_dssp GTTSEEEEEEECHHHH
T ss_pred ccCCcEEEEEECcCch
Confidence 368999999999985
No 240
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.45 E-value=0.00044 Score=60.37 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=38.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc-----------------cceeeccCCCCceEEEEEEE--------cC--CeEEEE
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ-----------------WGVVRTSDKPGLTQTINFFK--------LG--TKLCLV 143 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~-----------------~~~~~~~~~~g~t~~~~~~~--------~~--~~~~li 143 (237)
....|+|+|..++|||+|+|.|++. .+....+....+|+.+-+.. .+ ..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 4457789999999999999976521 11111112233555553221 12 358999
Q ss_pred eCCCCCCccc
Q 026538 144 DLPGYGFAYA 153 (237)
Q Consensus 144 DTpG~~~~~~ 153 (237)
||.|+.+...
T Consensus 146 DTEG~~d~~~ 155 (457)
T 4ido_A 146 DTQGTFDSQS 155 (457)
T ss_dssp EECCBTCTTC
T ss_pred eccCCCCccc
Confidence 9999887533
No 241
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.42 E-value=5.9e-05 Score=65.10 Aligned_cols=68 Identities=9% Similarity=0.081 Sum_probs=43.1
Q ss_pred cCCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCC---------CCh--hHHHHHHHHHh---
Q 026538 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---------VKP--RDHELISLMER--- 201 (237)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~---------~~~--~~~~~~~~l~~--- 201 (237)
.+..+.+|||+|... .+ .....|+.. ++++++|+|.+.. ... ....++..+..
T Consensus 215 ~~v~l~iwDtaGQe~------~r----~~w~~yf~~---a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 215 DKVNFHMFDVGGQRD------ER----RKWIQCFND---VTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp TTEEEEEEEECCSGG------GG----GGGGGGTTT---CCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred CCccceecccchhhh------hh----hhhHhhccC---CCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 367799999999642 11 222334433 9999999998751 111 11234444433
Q ss_pred -cCCcEEEEEecCCCC
Q 026538 202 -SQTKYQVVLTKTDTV 216 (237)
Q Consensus 202 -~~~piilv~NK~Dl~ 216 (237)
.++|+++|+||+|+.
T Consensus 282 ~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 282 LRTISVILFLNKQDLL 297 (402)
T ss_dssp CSSCCEEEEEECHHHH
T ss_pred CCCCeEEEEEEChhhh
Confidence 268999999999984
No 242
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.39 E-value=8.2e-05 Score=56.98 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhhHHHHHhccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+++++|++|||||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999863
No 243
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.37 E-value=7.2e-05 Score=60.93 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=36.2
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCChHHHHHHHHHHH
Q 026538 175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (237)
Q Consensus 175 ~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~~~~~~~~~~l~ 229 (237)
+|+|++|+|+..+.......+- .+ ++|.++|+||+|+.++.......+.++
T Consensus 22 ~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~~ 72 (262)
T 3cnl_A 22 VNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFFK 72 (262)
T ss_dssp CSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999999876555432211 22 799999999999998765555444443
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.37 E-value=7.5e-05 Score=58.05 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..++|+|++|||||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999875
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.36 E-value=0.0001 Score=56.26 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999875
No 246
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.32 E-value=8.5e-05 Score=63.15 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=40.4
Q ss_pred CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCC---------CCCh--hHHHHHHHHHh----
Q 026538 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW---------GVKP--RDHELISLMER---- 201 (237)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~---------~~~~--~~~~~~~~l~~---- 201 (237)
...+.+|||+|... .+ .+...|+.. ++++++|+|.+. .... ....+++.+..
T Consensus 182 ~v~l~iwDtaGQe~------~r----~~~~~y~~~---~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN------ER----RKWIHLFEG---VTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTT------GG----GGTGGGCTT---EEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchh------hh----HHHHHHhCC---CCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 46799999999643 11 222233333 899999999751 1111 11233444432
Q ss_pred cCCcEEEEEecCCCC
Q 026538 202 SQTKYQVVLTKTDTV 216 (237)
Q Consensus 202 ~~~piilv~NK~Dl~ 216 (237)
.++|+++|+||+|+.
T Consensus 249 ~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIF 263 (354)
T ss_dssp SSCEEEEEEECHHHH
T ss_pred CCCeEEEEEECcchh
Confidence 368999999999984
No 247
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.27 E-value=0.0007 Score=56.17 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=35.4
Q ss_pred cccEEEEEEeCCCCC-ChhH-HHHHHHHHhcCCcEEEEEecCCCCChH
Q 026538 174 SLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~piilv~NK~Dl~~~~ 219 (237)
.+|.+++|+|+.++. +... ..++..+...++|+++|+||+|+.++.
T Consensus 79 naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 79 NVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp SCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH
T ss_pred hcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCcc
Confidence 399999999988653 4332 345556666789999999999998765
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.26 E-value=0.00016 Score=56.50 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++|+|++|||||||++.|.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3478999999999999999999863
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.24 E-value=0.00011 Score=56.80 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.5
Q ss_pred EEEecCCCCchhhHHHHHhcc
Q 026538 95 IAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~ 115 (237)
|+|+|++|||||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999865
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.24 E-value=0.00017 Score=57.12 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
..-.++|+|++|||||||++.|++..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 44588999999999999999999863
No 251
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.23 E-value=0.00019 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++++|++|||||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 347899999999999999999875
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.19 E-value=0.00017 Score=56.85 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-.++|+|++|||||||++.|.+.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999986
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.18 E-value=0.00016 Score=55.42 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++|+|++|||||||++.|++.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999975
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.18 E-value=0.00018 Score=56.16 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|+|++|||||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999999876
No 255
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.16 E-value=0.00024 Score=56.86 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|||||||++.|.|-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3478999999999999999999863
No 256
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.15 E-value=0.0002 Score=56.89 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999863
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.12 E-value=0.00024 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++++|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 347899999999999999999876
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.10 E-value=0.00025 Score=53.19 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|+.|+|||||++.|++.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999986
No 259
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.10 E-value=0.00065 Score=53.11 Aligned_cols=66 Identities=6% Similarity=0.010 Sum_probs=40.9
Q ss_pred CCeEEEEeCCCC-CCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhc-CCcEEEEEecCC
Q 026538 137 GTKLCLVDLPGY-GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTD 214 (237)
Q Consensus 137 ~~~~~liDTpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-~~piilv~NK~D 214 (237)
.+.+.++|||+. ... . ....+. .+|.+++++.....--.....+++.+... +.++.+|+|++|
T Consensus 67 ~yD~viiD~p~~~~~~---~---------~~~~l~---~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~ 131 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---D---------LEALAD---GCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIP 131 (209)
T ss_dssp GCSEEEEEEECCCSSS---H---------HHHHHH---TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBC
T ss_pred cCCEEEEeCCCCcCcH---H---------HHHHHH---HCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecC
Confidence 467999999985 431 1 111111 28999999986532112223455555552 678899999999
Q ss_pred CCC
Q 026538 215 TVF 217 (237)
Q Consensus 215 l~~ 217 (237)
...
T Consensus 132 ~~~ 134 (209)
T 3cwq_A 132 PYP 134 (209)
T ss_dssp CTT
T ss_pred Ccc
Confidence 754
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.09 E-value=0.00034 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
...|+|+|++|||||||++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999764
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.09 E-value=0.00026 Score=56.87 Aligned_cols=23 Identities=22% Similarity=0.305 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|++|||||||++.|.|-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999986
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.07 E-value=0.00026 Score=58.01 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999999863
No 263
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.06 E-value=0.00027 Score=57.26 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|+|-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999863
No 264
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.05 E-value=0.00034 Score=55.98 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.9
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|+|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 488999999999999999999874
No 265
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.05 E-value=0.00028 Score=56.71 Aligned_cols=24 Identities=46% Similarity=0.643 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999863
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.05 E-value=0.00028 Score=56.84 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|+|-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999863
No 267
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.05 E-value=0.00028 Score=57.56 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 478999999999999999999863
No 268
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.04 E-value=0.00027 Score=55.74 Aligned_cols=23 Identities=22% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEEecCCCCchhhHHHHHhccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.++++|++|||||||++.|+|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999863
No 269
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.04 E-value=0.00029 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|++|||||||++.+++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCG
T ss_pred EEEEEECCCCCCHHHHHHHHccC
Confidence 36899999999999999976543
No 270
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.04 E-value=0.0003 Score=56.03 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|+|..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999873
No 271
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.03 E-value=0.00027 Score=55.43 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=20.7
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++++|++|||||||++.|+|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999986
No 272
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.02 E-value=0.00031 Score=56.34 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|+|-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999863
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.02 E-value=0.00037 Score=56.65 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|+|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999863
No 274
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.01 E-value=0.00033 Score=54.56 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999885
No 275
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.00 E-value=0.00034 Score=56.44 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|++|||||||++.|+|-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999995
No 276
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.99 E-value=0.00034 Score=56.49 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999999873
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.99 E-value=0.00034 Score=56.86 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|++|||||||++.|++.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 37899999999999999999875
No 278
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.99 E-value=0.002 Score=53.56 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=34.2
Q ss_pred ccccEEEEEEeCCCCCChhH--HHHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538 173 VSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~~~piilv~NK~Dl~~~~~ 220 (237)
..+|.+++|+|+..+..... ..++......++|.++|+||+|+.++.+
T Consensus 85 anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~ 134 (307)
T 1t9h_A 85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQD 134 (307)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHH
T ss_pred HhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhh
Confidence 34899999999986544433 1233333456899999999999987654
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.98 E-value=0.00043 Score=56.33 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|||||||++.|.|-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3478999999999999999999863
No 280
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.98 E-value=0.00046 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|++||||||+++.|.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999999876
No 281
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.97 E-value=0.00036 Score=57.29 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|+|..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999999863
No 282
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.97 E-value=0.00046 Score=52.59 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+.++++|++|+|||||++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999875
No 283
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.95 E-value=0.00047 Score=55.98 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|||||||++.|+|-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3488999999999999999999863
No 284
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.012 Score=51.27 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-|++.|+||+|||+|..++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999987
No 285
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.95 E-value=0.00047 Score=55.86 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|+|-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999863
No 286
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.94 E-value=0.00049 Score=56.24 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++|+|++|||||||++.|+|-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999863
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.94 E-value=0.00047 Score=57.27 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..-.++|+|++|+|||||++.|++-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3448999999999999999999875
No 288
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.94 E-value=0.0004 Score=56.19 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999873
No 289
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.93 E-value=0.0005 Score=53.24 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|++|||||||++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999764
No 290
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.93 E-value=0.00052 Score=55.95 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|++|||||||++.|+|-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999996
No 291
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.92 E-value=0.00046 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 292
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.90 E-value=0.0025 Score=52.40 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=56.7
Q ss_pred CCCCEEEEecCC-CCchhhHHHHHhcccceeeccCCC-----CceEEEEEEEc---------------------------
Q 026538 90 PDLPEIAFAGRS-NVGKSSMLNALTRQWGVVRTSDKP-----GLTQTINFFKL--------------------------- 136 (237)
Q Consensus 90 ~~~~~i~lvG~~-~~GKSTLin~L~~~~~~~~~~~~~-----g~t~~~~~~~~--------------------------- 136 (237)
...|+++++|+. ..=..+|+..|........+...+ |.-..+.+...
T Consensus 99 ~~~pr~amFGpGlE~~~~~lv~~lm~~~e~~p~~g~~~r~~~giGsGv~~~~~~~~~fni~tLYs~tr~ER~r~~~e~~~ 178 (312)
T 3l2o_B 99 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS 178 (312)
T ss_dssp CCCCEEEEECTHHHHSSSCHHHHHTTCGGGCCEECCSTTTCSSSCCCEEEEETTTEEEEEEECSCCCC------------
T ss_pred CCCceEEEECCCcccccHHHHHHHHcCCCccccccccCCCcCccccceEEEECCceeEEEEEeccccHHHHhhhhhhhhh
Confidence 566899999971 112347888887764333333222 21111111111
Q ss_pred -CCeEEEEeCCCCCCcccchHHHHHHHHHHHHHHhccccccEEEEEEeCCCCCChhHHH----HHHHHH----hcCCcEE
Q 026538 137 -GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLME----RSQTKYQ 207 (237)
Q Consensus 137 -~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~----~~~~l~----~~~~pii 207 (237)
..++....+||-.+...+..++..|... +.. .|++|||||+++.-...... +...+. -.+.|++
T Consensus 179 ~~~k~f~~~~~~~~~~GGQ~~lRplWr~Y----y~~---tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLL 251 (312)
T 3l2o_B 179 AVNKMFSRHNEGDDQQGSRYSVIPQIQKV----CEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 251 (312)
T ss_dssp ------------------CCCCCHHHHHH----HHH---CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEE
T ss_pred hhhhhccccCCCCcCCCCHHHHHHHHHHH----hcC---CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEE
Confidence 1223344455422212234455555544 433 99999999987642211211 112221 1478999
Q ss_pred EEEec-CCCCC
Q 026538 208 VVLTK-TDTVF 217 (237)
Q Consensus 208 lv~NK-~Dl~~ 217 (237)
|..|| -|+..
T Consensus 252 VfANKkQDlp~ 262 (312)
T 3l2o_B 252 VLSCISQGDVK 262 (312)
T ss_dssp EEEEESSTTSC
T ss_pred EEeCCcccccC
Confidence 99997 47754
No 293
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.89 E-value=0.00058 Score=55.63 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999999863
No 294
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.87 E-value=0.00081 Score=57.41 Aligned_cols=53 Identities=11% Similarity=-0.053 Sum_probs=34.2
Q ss_pred HHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCCCh
Q 026538 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~~~ 218 (237)
+..++..+... ++++++|+|+++........+.+.+. +.|+++|+||+|+.+.
T Consensus 61 f~~~L~~~~~~---~~lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 61 FLSMLHRIGES---KALVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPR 113 (369)
T ss_dssp HHHHHHHHHHH---CCEEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCT
T ss_pred HHHHHHHhhcc---CcEEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCC
Confidence 34444444433 78999999988643222222223322 6899999999999865
No 295
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.86 E-value=0.00053 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|+|++||||||+.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999865
No 296
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.86 E-value=0.00052 Score=55.86 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=21.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|++|||||||++.|+|.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999987
No 297
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.85 E-value=0.00047 Score=53.26 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++++|++|+|||||++.|++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999886
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.85 E-value=0.00054 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++++|++|||||||++.|.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5789999999999999999863
No 299
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.84 E-value=0.00029 Score=53.53 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..++|+|++|||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.84 E-value=0.00067 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+++|++||||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 347899999999999999998753
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.84 E-value=0.0005 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=16.3
Q ss_pred CCEEEEecCCCCchhhHHHHHh-cc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALT-RQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~-~~ 115 (237)
...++|+|++|||||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4578999999999999999999 65
No 302
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.83 E-value=0.00088 Score=57.17 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhccccccEEEEEEeCCCCCChhHHHHHHHHHh--cCCcEEEEEecCCCCChH
Q 026538 160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPI 219 (237)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~Dl~~~~ 219 (237)
.+..++..+... ++++++|+|+.+. ...+...+.. .++|+++|+||+|+.+..
T Consensus 58 ~f~~~l~~i~~~---~~~il~VvD~~d~----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 58 DFLRILNGIGKS---DALVVKIVDIFDF----NGSWLPGLHRFVGNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHS---CCEEEEEEETTSH----HHHCCTTHHHHSSSSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHhcc---CcEEEEEEECCCC----cccHHHHHHHHhCCCcEEEEEEChhcCCcc
Confidence 345555555554 7899999998752 1222222222 268999999999997643
No 303
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.81 E-value=0.00049 Score=57.27 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++|+|++|||||||++.|++-.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 4489999999999999999999863
No 304
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.78 E-value=0.00063 Score=57.82 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 378999999999999999999863
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.77 E-value=0.00072 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+++|++||||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999876
No 306
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.77 E-value=0.00078 Score=55.58 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|||||||++.|+|..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3478999999999999999999874
No 307
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.76 E-value=0.0026 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=18.0
Q ss_pred CCCEEEEecCCCCchhhHHHHHh
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALT 113 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~ 113 (237)
....|+|+|..|+||||+.-.|.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHH
Confidence 34577788999999999976554
No 308
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.76 E-value=0.00069 Score=56.49 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|+|++|||||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4458899999999999999999885
No 309
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.76 E-value=0.00082 Score=53.77 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=20.0
Q ss_pred CEEEEecCCCCchhhHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALT 113 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~ 113 (237)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999999
No 310
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.73 E-value=0.00069 Score=57.54 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++|+|++|||||||+++|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999875
No 311
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.73 E-value=0.00073 Score=57.35 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999999863
No 312
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.71 E-value=0.00084 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|++.|.+||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999765
No 313
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0078 Score=51.78 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-|++.|+||+|||+|..++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 36899999999999999999987
No 314
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.71 E-value=0.00084 Score=50.06 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.7
Q ss_pred CEEEEecCCCCchhhHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNAL 112 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L 112 (237)
+.|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 315
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.71 E-value=0.00068 Score=56.98 Aligned_cols=22 Identities=14% Similarity=0.419 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++++|++|||||||++.|++.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999986
No 316
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.71 E-value=0.0017 Score=53.85 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-.++++|++||||||+++.|.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 447899999999999999999864
No 317
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.71 E-value=0.00059 Score=57.02 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+.++|+|++|||||||+|.|++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 568899999999999999999975
No 318
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.70 E-value=0.0025 Score=52.43 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+++|++||||||+.+.|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346788999999999999999764
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.70 E-value=0.0008 Score=52.80 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++|+|++|||||||++.|++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999874
No 320
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.69 E-value=0.0008 Score=57.60 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 378999999999999999999864
No 321
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.69 E-value=0.00068 Score=57.68 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++|+|++|||||||+++|++..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 389999999999999999999863
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.68 E-value=0.00093 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|+++|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 323
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.67 E-value=0.00086 Score=57.30 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 378999999999999999999863
No 324
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.66 E-value=0.001 Score=56.55 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|||||||++.|.|-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3478999999999999999999863
No 325
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.66 E-value=0.00092 Score=50.67 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++++|++|+|||||++++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999876
No 326
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.66 E-value=0.00094 Score=53.44 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|++|||||||++.|.+.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999874
No 327
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.65 E-value=0.00088 Score=57.21 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 378999999999999999999863
No 328
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.65 E-value=0.0011 Score=56.34 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 378999999999999999999863
No 329
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.64 E-value=0.0011 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+++|++||||||+.+.|.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999854
No 330
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.0011 Score=56.32 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 378999999999999999999863
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.62 E-value=0.0011 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhhHHHHHhc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~ 114 (237)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 332
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.62 E-value=0.0011 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++++|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999986
No 333
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.60 E-value=0.00051 Score=60.51 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+++|.+|+||||+.+.|...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999999865
No 334
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.60 E-value=0.0012 Score=50.95 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|.+||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 335
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.012 Score=51.11 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-|++.|+||+|||+|..++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999987
No 336
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.58 E-value=0.00088 Score=56.96 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-+++|+|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999864
No 337
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.58 E-value=0.0011 Score=52.69 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=19.8
Q ss_pred CEEEEecCCCCchhhHHHHHhc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~ 114 (237)
-.++++|++|||||||++.|++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3789999999999999998883
No 338
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.57 E-value=0.028 Score=45.28 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...+++.|++|+|||+|..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 357899999999999999999875
No 339
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.57 E-value=0.00075 Score=57.14 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 378999999999999999999863
No 340
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.57 E-value=0.001 Score=56.86 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++|+|++|||||||++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999874
No 341
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.57 E-value=0.046 Score=43.43 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...+++.|++|+|||++..++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
No 342
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.56 E-value=0.013 Score=52.18 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++|.|++|+||||++.++...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999999876
No 343
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.55 E-value=0.0064 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-+++.|+||+|||+|..++...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35677799999999999999876
No 344
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.55 E-value=0.0011 Score=56.93 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|||||||++.|.|-.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3478999999999999999999863
No 345
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.55 E-value=0.0017 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999765
No 346
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0024 Score=54.25 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-.++++|++||||||+++.|.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 347899999999999999999864
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.52 E-value=0.0015 Score=49.47 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+.++++|.+|+|||||++.|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998853
No 348
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.51 E-value=0.0016 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+++|.+|||||||++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998864
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.51 E-value=0.0015 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+++|.+||||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999886
No 350
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.50 E-value=0.0011 Score=58.97 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++|+|++|||||||+++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999975
No 351
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.49 E-value=0.0012 Score=57.20 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++|+|++|||||||+++|++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999975
No 352
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.49 E-value=0.0017 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCchhhHHHHHh
Q 026538 92 LPEIAFAGRSNVGKSSMLNALT 113 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~ 113 (237)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 353
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.48 E-value=0.0015 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.47 E-value=0.0014 Score=50.82 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|+++|++||||||+.+.|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 36899999999999999999763
No 355
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0013 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....++|+|++|||||||++.|+|-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4568999999999999999999985
No 356
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.46 E-value=0.0018 Score=48.80 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|++.|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 357
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.014 Score=51.00 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-|++.|+||+|||+|..++.+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhc
Confidence 47899999999999999999987
No 358
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.43 E-value=0.0016 Score=48.93 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhhHHHHHhc
Q 026538 94 EIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~ 114 (237)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 688999999999999999987
No 359
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.43 E-value=0.0016 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 360
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.42 E-value=0.0026 Score=51.95 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEecCCCCchhhHHHHHhcc
Q 026538 95 IAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~ 115 (237)
++++|++|+|||||++++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999986
No 361
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.41 E-value=0.001 Score=56.45 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|.|-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999999863
No 362
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.03 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=21.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-|++.|+||+|||+|..++.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 47999999999999999999987
No 363
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.40 E-value=0.0019 Score=54.02 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|+|++|||||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999988654
No 364
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.39 E-value=0.002 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+.|+++|.+||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999754
No 365
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.39 E-value=0.0018 Score=51.33 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|.|.+|||||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999999875
No 366
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.37 E-value=0.0017 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|+|.|.+||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 367
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.36 E-value=0.0023 Score=48.67 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+++|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998765
No 368
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.35 E-value=0.018 Score=49.86 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+++|.+||||||+.+.|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456788999999999999999875
No 369
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.34 E-value=0.0022 Score=48.69 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|+|.|.+||||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 370
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0057 Score=53.23 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.-|++.|+||+|||+|..++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 47999999999999999999987
No 371
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.33 E-value=0.0021 Score=48.94 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|+++|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998754
No 372
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.33 E-value=0.0022 Score=52.91 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|+|.+|||||||.+.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999988765
No 373
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.33 E-value=0.0019 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEecCCCCchhhHHHHHhc
Q 026538 94 EIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~ 114 (237)
..+|+|++|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999864
No 374
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.26 E-value=0.002 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999876
No 375
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.033 Score=46.38 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..+.+.|.|+||+|||++++.++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 376
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.25 E-value=0.0025 Score=48.22 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+.|+++|.+|+||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 377
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.21 E-value=0.031 Score=46.97 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++|.|++|+|||||++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999865
No 378
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.20 E-value=0.0038 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+++|.+||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999875
No 379
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.20 E-value=0.0031 Score=48.83 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|.|.+||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.20 E-value=0.0033 Score=48.36 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 381
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.19 E-value=0.0023 Score=57.34 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|||||||++.|.|..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3488999999999999999999863
No 382
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.17 E-value=0.0027 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.0
Q ss_pred CEEEEecCCCCchhhHHHHHhc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~ 114 (237)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 383
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.17 E-value=0.0032 Score=48.00 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|++.|.+||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998753
No 384
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.17 E-value=0.0028 Score=49.42 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 385
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.16 E-value=0.0038 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|.|.+||||||+.+.|...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999998754
No 386
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.15 E-value=0.0029 Score=49.59 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998754
No 387
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.15 E-value=0.0045 Score=51.49 Aligned_cols=74 Identities=20% Similarity=0.165 Sum_probs=41.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeecc-C-------CCCceEEEE-EEEcCCeEEEEeCCCCCCcccchHHHHHHHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-D-------KPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-~-------~~g~t~~~~-~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (237)
+.|+|+|++|||||||...|........++ + ..-+|.... ....+.+..++|...+.+..+.....+....
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~ 83 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATP 83 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHH
Confidence 468899999999999999998764322211 1 111121111 1113667888888777665444433333333
Q ss_pred HHH
Q 026538 164 LVK 166 (237)
Q Consensus 164 ~~~ 166 (237)
.+.
T Consensus 84 ~i~ 86 (322)
T 3exa_A 84 LIT 86 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 388
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.15 E-value=0.0029 Score=49.22 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999654
No 389
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.13 E-value=0.0025 Score=56.17 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++|+|++|||||||++.|.|-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999999874
No 390
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.12 E-value=0.0027 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+|+|+|.+||||||+...|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999765
No 391
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.11 E-value=0.0032 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457899999999999999999865
No 392
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.09 E-value=0.0043 Score=47.77 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|.+||||||+.+.|...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998754
No 393
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.09 E-value=0.0036 Score=48.95 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998764
No 394
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.09 E-value=0.0038 Score=48.25 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|.|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999754
No 395
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.08 E-value=0.0034 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|.|.+||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
No 396
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.08 E-value=0.0032 Score=48.56 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 397
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.07 E-value=0.0028 Score=56.78 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|||||||++.|+|..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 378999999999999999999863
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.07 E-value=0.0031 Score=49.29 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|++|+|||||++.+++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37889999999999999998854
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.07 E-value=0.0033 Score=47.49 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+++|.+||||||+.+.|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999764
No 400
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.06 E-value=0.0033 Score=56.85 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+-.++++|++|||||||++.|.|-.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3489999999999999999999863
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.06 E-value=0.0073 Score=48.33 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..++++|++|+|||||++++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999876
No 402
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.04 E-value=0.0037 Score=51.95 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+.|+|+|++|||||||...|....
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 467889999999999999998763
No 403
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.04 E-value=0.038 Score=48.25 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+.++|.|++|+|||||.+.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999999999876
No 404
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.03 E-value=0.006 Score=51.25 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+.|+|+|++|||||||...|....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 478999999999999999999764
No 405
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.03 E-value=0.0029 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-++++|++|+|||||++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999876
No 406
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.03 E-value=0.0029 Score=53.04 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999876
No 407
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.03 E-value=0.0032 Score=57.12 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+-.++++|++|||||||++.|+|-.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4489999999999999999999864
No 408
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.02 E-value=0.0016 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 409
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.01 E-value=0.0036 Score=56.60 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+-.++++|++|+|||||++.|.|-.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999999863
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.00 E-value=0.0035 Score=50.52 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|+|+|.+||||||+.+.|.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999864
No 411
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0032 Score=57.21 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|+|||||++.|.|..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3488999999999999999999863
No 412
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.99 E-value=0.0049 Score=53.03 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=37.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcccceeecc-CC-------CCceEEEEE-EEcCCeEEEEeCCCCCCcccchHH
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DK-------PGLTQTINF-FKLGTKLCLVDLPGYGFAYAKEEV 157 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~~~~~~~-~~-------~g~t~~~~~-~~~~~~~~liDTpG~~~~~~~~~~ 157 (237)
+.|+|+|++|+|||||...|........++ +. .-+|..... ...+.+..++|...+.+..+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F 76 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRF 76 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHH
Confidence 468899999999999999998653222222 11 112222111 112567788887776654444433
No 413
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.99 E-value=0.0043 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998865
No 414
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.98 E-value=0.0026 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
..|+|+|++|||||||...|....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998763
No 415
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.97 E-value=0.0036 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+.|+++|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998754
No 416
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.97 E-value=0.0036 Score=56.77 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|||||||++.|+|-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4489999999999999999999864
No 417
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.96 E-value=0.0034 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-+++++|++|+|||||++.|++..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999999873
No 418
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.96 E-value=0.0032 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++|+|++|+|||||++.|++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 37899999999999999998865
No 419
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.96 E-value=0.0038 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+.|+++|.+||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999998753
No 420
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.93 E-value=0.004 Score=47.33 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|++.|.+||||||+.+.|...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 421
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.92 E-value=0.0035 Score=56.94 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhccc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
..-.++++|++|+|||||++.|.|..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 33488999999999999999999863
No 422
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.92 E-value=0.004 Score=45.94 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhHHHHHh
Q 026538 94 EIAFAGRSNVGKSSMLNALT 113 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~ 113 (237)
..+|+|++|+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999975
No 423
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.92 E-value=0.15 Score=42.24 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|++.|++|+|||+|..++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57899999999999999999876
No 424
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.92 E-value=0.0032 Score=56.90 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|||||||++.|.|..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 4489999999999999999999864
No 425
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.91 E-value=0.0051 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
..|+|+|+|||||+|....|....
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 356788999999999999998764
No 426
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.91 E-value=0.0045 Score=47.28 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|++.|.+||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
No 427
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.91 E-value=0.0037 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhhHHHHHhcccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQWG 117 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~~ 117 (237)
+|+|+|+|||||+|....|....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999987643
No 428
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.90 E-value=0.004 Score=50.12 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.|+|+|++|||||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5789999999999999999765
No 429
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.90 E-value=0.0055 Score=46.41 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.2
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|++.|.+||||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 430
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.89 E-value=0.0037 Score=53.20 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhHHHHHh
Q 026538 94 EIAFAGRSNVGKSSMLNALT 113 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~ 113 (237)
..+|+|++|+|||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999987
No 431
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.88 E-value=0.0047 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 432
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.87 E-value=0.0046 Score=48.18 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 433
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.87 E-value=0.0047 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.1
Q ss_pred CEEEEecCCCCchhhHHHHHhc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~ 114 (237)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999976
No 434
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.87 E-value=0.0045 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|++.|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 435
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.87 E-value=0.06 Score=45.21 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=18.3
Q ss_pred EEEEecCCCCchhhHHHHHhc
Q 026538 94 EIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~ 114 (237)
.++|.|+||+|||||+..++.
T Consensus 48 LiiIaG~pG~GKTt~al~ia~ 68 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVL 68 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 788999999999999877654
No 436
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.86 E-value=0.0039 Score=55.81 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++|+|++|||||||++.|+|..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999863
No 437
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.82 E-value=0.005 Score=46.75 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEecCCCCchhhHHHHHhc
Q 026538 94 EIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~ 114 (237)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 438
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.82 E-value=0.0042 Score=54.21 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-+++|+|++|||||||++.|.+..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3489999999999999999999863
No 439
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.81 E-value=0.0042 Score=56.27 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.-.++++|++|||||||++.|.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4489999999999999999999863
No 440
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.79 E-value=0.0043 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=16.5
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|++.|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998754
No 441
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.79 E-value=0.0048 Score=47.08 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 442
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.79 E-value=0.0061 Score=47.26 Aligned_cols=23 Identities=13% Similarity=-0.038 Sum_probs=20.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
.-.++++|++|+|||||+..+++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999986
No 443
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.78 E-value=0.0056 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++++|++|+|||||++.|.+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 348899999999999999999875
No 444
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.78 E-value=0.0056 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|.|.+||||||+.+.|...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
No 445
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.78 E-value=0.0046 Score=55.40 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++|+|++|||||||++.|+|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999873
No 446
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.75 E-value=0.33 Score=39.88 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.0
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+++.|++|+|||+++.++...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 3455677999999999999866
No 447
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.75 E-value=0.0054 Score=47.68 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=20.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+++|.+||||||+.+.|.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998764
No 448
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.72 E-value=0.0067 Score=47.51 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...+++.|++|+|||||+..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998765
No 449
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.71 E-value=0.0049 Score=48.19 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.70 E-value=0.0051 Score=55.89 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.8
Q ss_pred CEEEEecCCCCchhhHHHHHhccc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
-.++++|++|+|||||++.|.|..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999863
No 451
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.67 E-value=0.0057 Score=48.24 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|++|+|||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999874
No 452
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.66 E-value=0.0075 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999764
No 453
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.62 E-value=0.0067 Score=47.69 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 454
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.61 E-value=0.0065 Score=48.67 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.1
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|.|.+||||||+.+.|...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988653
No 455
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.60 E-value=0.00099 Score=52.95 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.8
Q ss_pred EEEecCCCCchhhHHHHHhcc
Q 026538 95 IAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 95 i~lvG~~~~GKSTLin~L~~~ 115 (237)
++|+|++|||||||+++|.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468899999999999999875
No 456
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.60 E-value=0.014 Score=49.29 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|+|.|++|+|||+|..++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999876
No 457
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.60 E-value=0.0054 Score=45.95 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...+++.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998765
No 458
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.59 E-value=0.0072 Score=48.13 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|.|++||||||+.+.|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998743
No 459
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.58 E-value=0.0065 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+.+++.|++|+||||+++.+.+.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999873
No 460
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.58 E-value=0.007 Score=47.94 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+|.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998765
No 461
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.57 E-value=0.036 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..++++|++|+|||+++..+...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999876
No 462
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.55 E-value=0.047 Score=46.54 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|.|++|+|||+|+.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999765
No 463
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.0063 Score=55.28 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhhHHHHHhccc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
.++++|++|+|||||++.|.|..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999999874
No 464
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.54 E-value=0.0074 Score=46.35 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..+++.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999875
No 465
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.53 E-value=0.0092 Score=47.17 Aligned_cols=40 Identities=10% Similarity=-0.041 Sum_probs=29.5
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHhcCCcEEEEEecCCCC
Q 026538 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (237)
Q Consensus 177 ~v~~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~Dl~ 216 (237)
.-++++|..+-+.....+.+..+...++|+++++-..|-.
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 4577888766565555566777666789999999988864
No 466
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.52 E-value=0.035 Score=47.02 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=28.5
Q ss_pred cccEEEEEEeCCCCC-ChhH-HHHHHHHHhcCCcEEEEEecCCCCChHH
Q 026538 174 SLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPID 220 (237)
Q Consensus 174 ~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~piilv~NK~Dl~~~~~ 220 (237)
.+|.+++| |+..+. .... ..++......++|.++|+||+|+.++.+
T Consensus 130 nvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~ 177 (358)
T 2rcn_A 130 NIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEG 177 (358)
T ss_dssp CCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHH
T ss_pred cCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchh
Confidence 37888866 443332 2221 1222223446899999999999998754
No 467
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.46 E-value=0.0083 Score=44.68 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=20.7
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..-+|++.|.+||||||+.+.|...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998764
No 468
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.43 E-value=0.0066 Score=60.01 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+-+|+++|++|||||||++.|++-.
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Confidence 3489999999999999999999864
No 469
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.42 E-value=0.01 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.3
Q ss_pred CCCEEEEecCCCCchhhHHHHHhc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
....|+|+|.+||||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999886
No 470
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.41 E-value=0.0097 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...+++.|++|+|||+|++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999999875
No 471
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.39 E-value=0.009 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+.|+|.|.+||||||+.+.|...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999998764
No 472
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.38 E-value=0.0092 Score=48.78 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~ 114 (237)
...|+|.|.+||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999873
No 473
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.33 E-value=0.067 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..-|++.|+||+|||+|.+++.+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999987
No 474
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.33 E-value=0.055 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++++|++|+|||+++..|...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999865
No 475
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.32 E-value=0.0076 Score=47.05 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+++.|+||+||||++.+|...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999998888754
No 476
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.0097 Score=49.79 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+.+++.|++|+||||+++++.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999875
No 477
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.29 E-value=0.0089 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++|+|++|+|||||+..+++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999988863
No 478
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.27 E-value=0.011 Score=45.38 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+++.|++|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999998764
No 479
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.24 E-value=0.011 Score=45.87 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|++|+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999999876
No 480
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.23 E-value=0.0097 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
+.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 481
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.21 E-value=0.0098 Score=46.16 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.9
Q ss_pred EEEEecCCCCchhhHHHHHh
Q 026538 94 EIAFAGRSNVGKSSMLNALT 113 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~ 113 (237)
..+|+|++|+||||++.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 56889999999999999875
No 482
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.20 E-value=0.021 Score=46.73 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.++++|++|+|||++..++.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 6899999999999999998864
No 483
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.20 E-value=0.012 Score=47.99 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...+++.|++|+|||+|++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999999876
No 484
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.17 E-value=0.0062 Score=58.10 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.4
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++|+|++|+|||||++.|+|.
T Consensus 700 eivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999986
No 485
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.15 E-value=0.014 Score=47.92 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....++|.|++|+|||++..++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999887765
No 486
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.11 E-value=0.012 Score=45.30 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
....|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998754
No 487
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.06 E-value=0.0043 Score=53.39 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEecCCCCchhhHHHHHhc
Q 026538 94 EIAFAGRSNVGKSSMLNALTR 114 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~ 114 (237)
.++|+|++|+|||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999988843
No 488
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.05 E-value=0.0075 Score=54.14 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...|+|+|.+|||||||++.|.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 457899999999999999999876
No 489
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.03 E-value=0.016 Score=42.25 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.7
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|++.|++|+|||++..++...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999765
No 490
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.02 E-value=0.015 Score=47.90 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..|++.|++|+|||+|++++.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 47899999999999999999876
No 491
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.02 E-value=0.0099 Score=48.89 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=17.8
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.+.|+|.|.+||||||+.+.|...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998753
No 492
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.00 E-value=0.0085 Score=55.05 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.4
Q ss_pred CEEEEecCCCCchhhHHHHHh
Q 026538 93 PEIAFAGRSNVGKSSMLNALT 113 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~ 113 (237)
-.++|+|++|||||||++.++
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 368999999999999998764
No 493
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.99 E-value=0.012 Score=58.12 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.6
Q ss_pred CCEEEEecCCCCchhhHHHHHhccc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~~ 116 (237)
+-.++++|++|||||||++.|++..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CcEEEEEecCCCcHHHHHHHhcccc
Confidence 4489999999999999999999864
No 494
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.98 E-value=0.013 Score=48.00 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhhHHHHHhcc
Q 026538 94 EIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 94 ~i~lvG~~~~GKSTLin~L~~~ 115 (237)
.|+++|.+||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999863
No 495
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.97 E-value=0.015 Score=44.01 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..-|++.|++|+||||+.-.|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 346899999999999999998876
No 496
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.95 E-value=0.012 Score=45.65 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..++|.|++|+|||||+..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
No 497
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.95 E-value=0.012 Score=56.23 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhhHHHHHhcc
Q 026538 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 93 ~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
-.++++|++|+|||||++.|.+.
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999964
No 498
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.91 E-value=0.017 Score=48.83 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.4
Q ss_pred CCCEEEEecCCCCchhhHHHHHhcc
Q 026538 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 91 ~~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
..+.|+++|++|+||||+...|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999988764
No 499
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.87 E-value=0.014 Score=48.97 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999875
No 500
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.85 E-value=0.015 Score=48.13 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhhHHHHHhcc
Q 026538 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (237)
Q Consensus 92 ~~~i~lvG~~~~GKSTLin~L~~~ 115 (237)
...+++.|++|+|||||++++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999999875
Done!