RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 026538
(237 letters)
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 187 bits (478), Expect = 2e-60
Identities = 56/160 (35%), Positives = 88/160 (55%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
K E +A +P LPEIA AGRSNVGKSS +N+L + + RTS KPG TQT+N
Sbjct: 4 TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63
Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
F+ + +L VD+PGYGFA + ++AW +++ Y++TR LK V ++D + D
Sbjct: 64 FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123
Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
++ ++ V+ TK D + + A + + +
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL 163
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 186 bits (475), Expect = 9e-60
Identities = 61/164 (37%), Positives = 87/164 (53%)
Query: 69 NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
N+ + F +A P+ E+AFAGRSN GKSS LN LT Q + RTS PG T
Sbjct: 3 NLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62
Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
Q IN F++ LVDLPGYG+A EE+K W+ + EY+ R SL+ + +L+D + +
Sbjct: 63 QLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL 122
Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
K D ++I S V+LTK D + + + E +
Sbjct: 123 KDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV 166
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 183 bits (468), Expect = 5e-59
Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 1/160 (0%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
+E A+ +P P E+AF GRSNVGKSS+LNAL + + S PG T++IN
Sbjct: 4 RDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSIN 62
Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
F+ + +K VDLPGYG+A ++ + W+ LV++Y R SL+ V LL+D + + D
Sbjct: 63 FYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD 122
Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
++ M+ + +VLTK D V + A++ + +V
Sbjct: 123 LMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVF 162
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 181 bits (462), Expect = 9e-58
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
++ FF P PEIAFAGRSN GKS+ +N L Q + S PG TQ IN
Sbjct: 10 HQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN 69
Query: 133 FFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
+F +G LVDLPGYG+A K WE+L+ Y+ TR L + L++D + +
Sbjct: 70 YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL 129
Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
D +I + +LTK D + + ++ +
Sbjct: 130 TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSL 173
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 128 bits (325), Expect = 1e-37
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151
+ I FAGRSNVGKS+++ LT + VR +PG+T+ I + ++D+PG+GF
Sbjct: 1 MATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHK-IIDMPGFGFM 57
Query: 152 YAKE-EVKDAWEELVKEYVSTRV-SLKRVCLLIDTK-----------WGVKPRDHELISL 198
EV++ ++ + ++ ++ L++D K G P D E
Sbjct: 58 MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117
Query: 199 MERSQTKYQVVLTKTDTV 216
+ V + K D +
Sbjct: 118 LRELDIPTIVAVNKLDKI 135
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 89.0 bits (220), Expect = 8e-21
Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 18/173 (10%)
Query: 64 ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWG---V 118
IE + ++ + +S + D + +A G + GKSS +N L
Sbjct: 40 NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 98
Query: 119 VRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK 176
+ +T + +K + DLPG G + Y+ +
Sbjct: 99 AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD----------TYLEKMKFYE 148
Query: 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229
+I + K D ++ + + ++ V TK D+ + +
Sbjct: 149 YDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFD 201
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 59.3 bits (144), Expect = 1e-10
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 149
I AGR NVGKSS +NAL Q V SD G T +++ +G + LVD PG
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGL- 93
Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRV---CLLIDTKWGVKPRDHELISLMERSQTKY 206
++V + V+ R R L+ D+ P + ++++L + + +
Sbjct: 94 -----DDVGELGRLRVE---KARRVFYRADCGILVTDSAPT--PYEDDVVNLFKEMEIPF 143
Query: 207 QVVLTKTDTV 216
VV+ K D +
Sbjct: 144 VVVVNKIDVL 153
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 51.9 bits (125), Expect = 3e-08
Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
NVGKS+++N L ++ + +T D+PG+T + + K+G +L L+D PG
Sbjct: 130 NVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 50.7 bits (122), Expect = 7e-08
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
N GKS+++N L + +PG+T+ I +F L + ++D PG
Sbjct: 109 NTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPG 153
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 50.7 bits (121), Expect = 1e-07
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 95 IAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
+ G +NVGKS+ +N + V+ TS PG T + L + L D PG
Sbjct: 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 49.0 bits (116), Expect = 4e-07
Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 28/156 (17%)
Query: 95 IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 142
+ G S +GKS+++N+L + + ++K T I + +L +
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80
Query: 143 VDLPGYGFA----YAKEEVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVK 189
VD PGYG A + + +E + Y+ L R C + +G
Sbjct: 81 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 140
Query: 190 PRDHELISLMERSQTKYQV--VLTKTDTVFPIDVAR 223
+ + ++ M+ K + V+ K DT+ + R
Sbjct: 141 LKPLD-VAFMKAIHNKVNIVPVIAKADTLTLKERER 175
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 48.5 bits (116), Expect = 5e-07
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 18/73 (24%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKLGTKLCLVDLP 146
IA G N GK+S+ N +T Q W PG+T + K L + DLP
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNW--------PGVTVERKSGLVKKNKDLEIQDLP 57
Query: 147 G-YGF-AYAKEEV 157
G Y Y+ E
Sbjct: 58 GIYSMSPYSPEAK 70
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 47.1 bits (113), Expect = 5e-07
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
+ ++ GR NVGKSS+ N L ++ R++ D PG+T+ + + LVD
Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLKEGVVETDRGRFLLVDT 56
Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
G D WE+ ++E V + V L +D + + D+E+ + R
Sbjct: 57 GGL-------WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGK 109
Query: 205 KYQVVLTKTD 214
+V TK D
Sbjct: 110 PVILVATKVD 119
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 48.4 bits (115), Expect = 6e-07
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
+ G +NVGKS+ +N + + V+ TS PG T + L + L D PG
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIIN 224
Query: 151 AYAKEEVKDAWE 162
+ DA +
Sbjct: 225 HHQMAHFVDARD 236
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 45.2 bits (108), Expect = 3e-06
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
IA G NVGKS++ NALT W PG+T + F+ G K +VDL
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 57
Query: 146 PG-YGF-AYAKEEV 157
PG Y A + +E+
Sbjct: 58 PGVYSLTANSIDEI 71
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 46.0 bits (109), Expect = 3e-06
Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 151
+ G+ VGKSS +N+L + VVR S G + ++D PG
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV-- 95
Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ---- 207
V EL+K ++ R LL + V D ++ +
Sbjct: 96 -EAGYVNHQALELIKGFLVNR---TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 208 ----VVLTKTDTVFP 218
+VLT P
Sbjct: 152 CKTLLVLTHAQFSPP 166
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 44.9 bits (107), Expect = 4e-06
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
IA G NVGKS++ NALT W PG+T + F+ G K +VDL
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 61
Query: 146 PG-YGF-AYAKEEV 157
PG Y A + +E+
Sbjct: 62 PGVYSLTANSIDEI 75
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 45.4 bits (108), Expect = 5e-06
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 19/74 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
+A G NVGK+++ NALT RQ W PG+T + + + +VDL
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNW--------PGVTVEKKEGIMEYREKEFLVVDL 57
Query: 146 PG-YGF-AYAKEEV 157
PG Y A++ +E+
Sbjct: 58 PGIYSLTAHSIDEL 71
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 45.0 bits (107), Expect = 7e-06
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
+A AG NVGK+S+ NALT +Q W PG+T + F G + L+DL
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANW--------PGVTVEKKEGVFTYKGYTINLIDL 59
Query: 146 PG-YGF-AYAKEEV 157
PG Y + +E
Sbjct: 60 PGTYSLGYSSIDEK 73
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 44.2 bits (105), Expect = 1e-05
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 21/86 (24%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
I G N GK+++ N LT RQ W G+T + F ++ LVDL
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNW--------AGVTVERKEGQFSTTDHQVTLVDL 57
Query: 146 PG-YGF-AYAKEEVKDAWEELVKEYV 169
PG Y + + D E++ Y+
Sbjct: 58 PGTYSLTTISSQTSLD--EQIACHYI 81
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 43.3 bits (101), Expect = 3e-05
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 28/165 (16%)
Query: 95 IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 142
+ G S +GKS+++N+L + + ++K T I + +L +
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 143 VDLPGYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWG-- 187
VD PGYG A + +E + Y+ L R C + +G
Sbjct: 100 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 159
Query: 188 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
+KP D + + ++ V+ K DT+ + R +I + I
Sbjct: 160 LKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEI 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 5e-05
Identities = 33/252 (13%), Positives = 65/252 (25%), Gaps = 62/252 (24%)
Query: 17 QPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKL- 75
+ + FVE+ L R Y L +P+ S E R++L
Sbjct: 74 KQEEMVQKFVEEVL----------RINYKF-LMSPIKTEQRQPSMMTRMYIE--QRDRLY 120
Query: 76 ---EFFAAAKVSSSFPAPDL--------PE--IAFAGRSNVGKSSMLNALTRQ------- 115
+ FA VS P L P + G GK+ + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 116 -----WGVVRTSDKPG--LTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167
W ++ + P L ++ ++ L+K
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 168 YVSTRVSLKRVCLLI-DTKWGVKPRDHELISLME-RSQTKYQVVLTK----TDTVFPIDV 221
CLL+ + + + + ++ T+ TD +
Sbjct: 241 KPYEN------CLLVLLNVQ-----NAKAWNAFNLSCKI---LLTTRFKQVTDFLSAATT 286
Query: 222 ARRAMQIEEVIF 233
++ +
Sbjct: 287 THISLDHHSMTL 298
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 42.3 bits (100), Expect = 5e-05
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 23/78 (29%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
G N GK+++ NALT Q W PG+T + F L + + DL
Sbjct: 4 ALLIGNPNCGKTTLFNALTNANQRVGNW--------PGVTVEKKTGEFLLGEHLIEITDL 55
Query: 146 PG------YGFAYAKEEV 157
PG +++E
Sbjct: 56 PGVYSLVANAEGISQDEQ 73
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 42.1 bits (100), Expect = 7e-05
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
++ + GR NVGKSS++NA+ + V+ S+ G T
Sbjct: 171 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTT 210
Score = 41.7 bits (99), Expect = 1e-04
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
P +A GR NVGKS++ N + + R S D PG+T+ + L L+D
Sbjct: 3 KPVVAIVGRPNVGKSTIFNRIAGE----RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDT 58
Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
G + + + +++ + V + +++ + GV D E+ ++ R++
Sbjct: 59 GGI------DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK 112
Query: 205 KYQVVLTKTDT 215
+ + K D
Sbjct: 113 PVVLAVNKLDN 123
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 42.1 bits (98), Expect = 7e-05
Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 27/152 (17%)
Query: 98 AGRSNVGKSSMLNAL-----------TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP 146
G S +GKS+++N+L + +T I + L +VD P
Sbjct: 14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP 73
Query: 147 GYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVKPRDH 193
G+G A V D + ++Y++ + R CL G +
Sbjct: 74 GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 133
Query: 194 ELISLMERSQTKYQV--VLTKTDTVFPIDVAR 223
+ I M+R K + ++ K DT+ P + +
Sbjct: 134 D-IEFMKRLHEKVNIIPLIAKADTLTPEECQQ 164
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 42.1 bits (100), Expect = 7e-05
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 144
D ++A GR NVGKS++ NA+ + + S PG T+ F G K VD
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFVD 234
Score = 41.7 bits (99), Expect = 1e-04
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
+ + GR NVGKS++ N L ++ + + D+ G+T+ G LVD
Sbjct: 1 MATVLIVGRPNVGKSTLFNKLVKK----KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT 56
Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
G + +D + +KE + + L ++D K G+ D L + +S
Sbjct: 57 CGV-----FDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTV 111
Query: 205 KYQVVLTKTDTV 216
+V K + +
Sbjct: 112 DTILVANKAENL 123
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 41.5 bits (97), Expect = 1e-04
Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 25/176 (14%)
Query: 60 SSERERIEENIFRNKLEFFAAAKV---SSSFPAPDLPE--IAFAGRSNVGKSSMLNALTR 114
+S+++ + E N K+ + D+ I G+ VGKSS +N++
Sbjct: 2 ASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61
Query: 115 QWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171
+ VV S ++ + G L ++D PG ++ + +
Sbjct: 62 E-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL-------IEGGYINDMALNIIKS 113
Query: 172 RVSLKRV-CLLIDTKWGVKPRDHELISLMERSQTKYQ--------VVLTKTDTVFP 218
+ K + LL + D+ + + + V LT P
Sbjct: 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 40.2 bits (93), Expect = 4e-04
Identities = 38/195 (19%), Positives = 60/195 (30%), Gaps = 49/195 (25%)
Query: 83 VSSSFPAPDL---PEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDK--------- 124
S + D P + AG+ + GK+S + L Q G T+D
Sbjct: 53 HSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGET 112
Query: 125 ----PGLT-----------------QTINFFKLGT-------KLCLVDLPGYGFAYAKEE 156
PG +N F + ++D PG +
Sbjct: 113 EGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRV 172
Query: 157 VKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215
+ V + + RV L + LL D K + E I + + K +VVL K D
Sbjct: 173 SRGYDFPAVLRWFAERVDL--IILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADM 230
Query: 216 VFPIDVARRAMQIEE 230
V + R +
Sbjct: 231 VETQQLMRVYGALMW 245
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 37.9 bits (89), Expect = 0.001
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ AGR N GKSS+LNAL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGR 27
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 37.8 bits (89), Expect = 0.002
Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 25/137 (18%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPG--- 147
+A G+ NVGKS++LN L V S K G T + ++ +D PG
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71
Query: 148 --YGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMER 201
E K + EE + + +ID G +PRD E+ ++
Sbjct: 72 PKKSDVLGHSMVEIAKQSLEE---------ADV--ILFMIDATEGWRPRDEEIYQNFIKP 120
Query: 202 SQTKYQVVLTKTDTVFP 218
VV+ K D + P
Sbjct: 121 LNKPVIVVINKIDKIGP 137
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 37.8 bits (89), Expect = 0.002
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130
+A G+ NVGKS++LN L V S +P QT
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGV-KVAPISPRP---QT 41
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 37.5 bits (88), Expect = 0.003
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G+ NVGKS++LN L +
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNE 266
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 37.5 bits (88), Expect = 0.003
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
AG+ N GKS++LN L Q
Sbjct: 236 TVIAGKPNAGKSTLLNTLLGQ 256
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 37.5 bits (88), Expect = 0.003
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+A GR NVGKSS+LNA ++
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQS 247
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 36.7 bits (85), Expect = 0.003
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLP 146
P I +G NVGKSS +N ++R V T+ + F K ++D P
Sbjct: 27 PHKKTIILSGAPNVGKSSFMNIVSR--ANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTP 84
Query: 147 G 147
G
Sbjct: 85 G 85
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 36.7 bits (86), Expect = 0.004
Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 40/160 (25%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKLGTK------LCLVD 144
IA GR NVGKS++LN L Q + TS K QT I +G VD
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQ-KISITSRKA---QTTRHRI----VGIHTEGAYQAIYVD 62
Query: 145 LPGYGFAYAKEE----VKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLM 199
PG + K A + V L V +++ T+W P D +++ +
Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSI------GDVEL--VIFVVEGTRWT--PDDEMVLNKL 112
Query: 200 ERSQTKYQVVLTKTDTVFP-------IDVARRAMQIEEVI 232
+ + + K D V + M +++
Sbjct: 113 REGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV 152
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 35.7 bits (82), Expect = 0.008
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 95 IAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGF 150
I G++ GKS+ N++ R+ T+ K +T+ T+L +VD PG
Sbjct: 32 IVLVGKTGAGKSATGNSILGRKVFHSGTAAKS-ITKKCEKRSSSWKETELVVVDTPGIFD 90
Query: 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 183
+ +E+++ + T + L++
Sbjct: 91 TEVPNA--ETSKEIIRCILLTSPGPHALLLVVP 121
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 34.9 bits (81), Expect = 0.017
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGL----TQTINFFKLGTKLCLVDLPGY 148
FAG+S VGKSS+LNAL + T S+ GL T + ++D PG
Sbjct: 219 IFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGV 278
Query: 149 -GFAY---AKEEVKDAWEELVK 166
F E++ + E
Sbjct: 279 REFGLWHLEPEQITQGFVEFHD 300
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 34.5 bits (80), Expect = 0.021
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTR 114
++P I G +N GK+S+ N+LT
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSLTG 201
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 33.7 bits (78), Expect = 0.040
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGL----TQTINFFKLGTKLCLVDLPGY 148
AG S VGKSS+LNA+ +R S+K T T K +VD PG+
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231
Query: 149 -GFAY---AKEEVKDAWEELVKE 167
EE+K ++E +
Sbjct: 232 ANLEINDIEPEELKHYFKEFGDK 254
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 33.3 bits (77), Expect = 0.053
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGL----TQTINFFKLGTKLCLVDLPGY 148
AG S VGKSS+L+ LT + +RT S+K T + G + D PG+
Sbjct: 169 ILAGPSGVGKSSILSRLTGE--ELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGF 226
Query: 149 -GFAYA----KEEVKDAWEELVK 166
EV++ + E ++
Sbjct: 227 SKVEATMFVKPREVRNYFREFLR 249
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 33.3 bits (77), Expect = 0.056
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 96 AFAGRSNVGKSSMLNAL 112
FAG+S VGKSS+LNA+
Sbjct: 177 VFAGQSGVGKSSLLNAI 193
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 33.3 bits (76), Expect = 0.064
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLP 146
++P + AG NVGKS++L ALT + P T+ IN F + ++D P
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTT--AKPEIASYPFTTRGINVGQFEDGYFRYQIIDTP 222
Query: 147 G 147
G
Sbjct: 223 G 223
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.8 bits (74), Expect = 0.085
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 98 AGRSNVGKSSMLNAL--TRQWGVVRTSDKPGLTQTINFFKLG-----TKLCLVDLPGYGF 150
G + +GKS++++ L T+ G T +PG+ N + L KL +V G+G
Sbjct: 48 VGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107
Query: 151 AYAKEEVKDAWEELVK 166
KE D+++ +V+
Sbjct: 108 QINKE---DSYKPIVE 120
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 32.0 bits (72), Expect = 0.13
Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 8/127 (6%)
Query: 95 IAFAGRSNVGKSSMLNA-LTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFA 151
+ GR+ GKS+ N+ L ++ R + + +VD P +
Sbjct: 24 LILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83
Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME---RSQTKYQV 208
+ EE Y+ + + L+ + + + K+ V
Sbjct: 84 QVSKT-DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMV 142
Query: 209 VL-TKTD 214
++ T+ +
Sbjct: 143 IVFTRKE 149
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 31.6 bits (71), Expect = 0.15
Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
+ + G + GK++++ + G ++ V G+
Sbjct: 1 SNAMNVWQVVGYKHSGKTTLMEKWVAA-----------------AVREGWRVGTVKHHGH 43
Query: 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQV 208
G A+ E D+ V+T V + L R ++++L + +
Sbjct: 44 GGEPARPEGVDSVRHERAGAVATAVEGDGLLQLH--LRRPLWRLDDVLALYAPLRLDLVL 101
Query: 209 VLTKTDTVFP-IDVARRAMQIEE 230
V P + + R
Sbjct: 102 VEGYKQERHPKVVLVRSEEDWAS 124
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.1 bits (69), Expect = 0.35
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 91 DLPEIAFAGRSNVGKSSMLNAL 112
+ + G GKS+ LNAL
Sbjct: 68 GVFRLLVLGDMKRGKSTFLNAL 89
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 30.0 bits (67), Expect = 0.43
Identities = 18/142 (12%), Positives = 47/142 (33%), Gaps = 23/142 (16%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
++ G S+ GK++++ + + G ++ +V +G
Sbjct: 3 LILSIVGTSDSGKTTLITRMMPI-----------------LRERGLRVAVVKRHAHGDFE 45
Query: 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212
+E KD+W+ S ++ + + + Y +V+T+
Sbjct: 46 IDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEGNDLDWIYERY---LSDYDLVITE 102
Query: 213 TDTVFP---IDVARRAMQIEEV 231
+ I V ++ ++E
Sbjct: 103 GFSKAGKDRIVVVKKPEEVEHF 124
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 30.3 bits (69), Expect = 0.58
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 94 EIAFAGRSNVGKSSMLNALTR 114
EI G+ NVGKS+ +A T
Sbjct: 2 EIGVVGKPNVGKSTFFSAATL 22
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.2 bits (67), Expect = 0.65
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 98 AGRSNVGKSSMLNAL-----------TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP 146
G S +GKS+++N+L + +T I + L +VD P
Sbjct: 37 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP 96
Query: 147 GYGFAYAKEEVKDAWEELVK 166
G+G A + W+ ++
Sbjct: 97 GFGDAVDNS---NCWQPVID 113
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.6 bits (66), Expect = 0.84
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKL---GTKLCLVDLPGYGF 150
I G++ GKS+ N++ R+ + LT+T + + ++ ++D P
Sbjct: 25 IILVGKTGTGKSAAGNSILRK-QAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFS 83
Query: 151 AYAKEE 156
E
Sbjct: 84 WKDHCE 89
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.1 bits (64), Expect = 0.98
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQW 116
+P +AFA S GK+++L L
Sbjct: 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 1.4
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 46/159 (28%)
Query: 35 RPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPE 94
RP+ L ++E + T+S FF A+++ F LPE
Sbjct: 7 RPLTLSHG--SLEHV-----LLVPTAS---------------FFIASQLQEQFNK-ILPE 43
Query: 95 --IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG--------LTQTINFFK---LGTK-- 139
FA ++ + + G V + +P L + F+ L
Sbjct: 44 PTEGFAADDE--PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 140 -LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR 177
L + +EL+K Y++ R+ KR
Sbjct: 102 HALAAKLLQ-----ENDTTLVKTKELIKNYITARIMAKR 135
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 28.6 bits (65), Expect = 1.7
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 102 NVGKSSMLNALTR 114
NVGKS++ NALTR
Sbjct: 11 NVGKSTLFNALTR 23
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.4 bits (63), Expect = 1.8
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF------FKLGTKLCLV 143
P ++ GRS GKSSM + + D L TI+ F L L
Sbjct: 1 PLGSKLLLMGRSGSGKSSMRSIIFSN---YSAFDTRRLGATIDVEHSHLRFLGNMTLNLW 57
Query: 144 DLPG 147
D G
Sbjct: 58 DCGG 61
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 28.3 bits (63), Expect = 2.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 90 PDLPEIAFAGRSNVGKSSMLNALT 113
LP IA G + GKSS+L ++
Sbjct: 32 DSLPAIAVVGGQSSGKSSVLESIV 55
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 28.2 bits (64), Expect = 2.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 102 NVGKSSMLNALTR 114
NVGKS+ A+T+
Sbjct: 30 NVGKSTFFRAITK 42
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 28.2 bits (64), Expect = 2.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 102 NVGKSSMLNALTR 114
NVGKS+ N LT
Sbjct: 32 NVGKSTFFNVLTN 44
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 28.2 bits (64), Expect = 2.5
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 102 NVGKSSMLNALTR 114
NVGKS++ NALT+
Sbjct: 12 NVGKSTLFNALTK 24
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 28.3 bits (64), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+A GRS GKS++ N TR
Sbjct: 372 VALVGRSGSGKSTIANLFTR 391
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 27.9 bits (63), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+A GRS GKS++ + +TR
Sbjct: 372 VALVGRSGSGKSTIASLITR 391
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 27.2 bits (60), Expect = 3.8
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
+ ++ + + F P I G GKSS+ + + + ++ L T
Sbjct: 2 HHHHHHSSGRENLYFQG-SKPRILLMGLRRSGKSSIQKVVFHK---MSPNETLFLESTNK 57
Query: 133 F------FKLGTKLCLVDLPG 147
+ D PG
Sbjct: 58 IYKDDISNSSFVNFQIWDFPG 78
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 27.4 bits (61), Expect = 4.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ GR+ GKS++L+A R
Sbjct: 50 VGLLGRTGSGKSTLLSAFLR 69
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 27.0 bits (60), Expect = 4.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 93 PEIAFAGRSNVGKSSMLNALTR-QWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
P I AG N GK+S+L LT S +P + G+ + LVD PG
Sbjct: 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYD----GSGVTLVDFPG 64
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 26.6 bits (59), Expect = 6.1
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 93 PEIAFAGRSNVGKSSMLNALTR-QWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
P I AG N GK+S+L LT S +P + G+ + LVD PG
Sbjct: 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYD----GSGVTLVDFPG 100
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 27.0 bits (59), Expect = 6.4
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 13/98 (13%)
Query: 99 GRSNVGKSSMLNALTRQWGVVR------TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
G VGKSS+L A + + +++ +T+ +L + + F
Sbjct: 38 GIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKI 97
Query: 153 A-------KEEVKDAWEELVKEYVSTRVSLKRVCLLID 183
+ E K + E+ +E L + D
Sbjct: 98 SLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFD 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,535,669
Number of extensions: 205240
Number of successful extensions: 831
Number of sequences better than 10.0: 1
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 84
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)