RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026538
(237 letters)
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 81.7 bits (200), Expect = 1e-19
Identities = 56/160 (35%), Positives = 88/160 (55%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
K E +A +P LPEIA AGRSNVGKSS +N+L + + RTS KPG TQT+N
Sbjct: 4 TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63
Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
F+ + +L VD+PGYGFA + ++AW +++ Y++TR LK V ++D + D
Sbjct: 64 FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123
Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVI 232
++ ++ V+ TK D + + A + + +
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL 163
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 73.3 bits (178), Expect = 1e-16
Identities = 61/161 (37%), Positives = 85/161 (52%)
Query: 77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
F +A P+ E+AFAGRSN GKSS LN LT Q + RTS PG TQ IN F++
Sbjct: 1 FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60
Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
LVDLPGYG+A EE+K W+ + EY+ R SL+ + +L+D + +K D ++I
Sbjct: 61 ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI 120
Query: 197 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEEVIFYLCG 237
S V+LTK D + + + E + G
Sbjct: 121 EWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 161
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 64.4 bits (156), Expect = 9e-13
Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 18/158 (11%)
Query: 64 ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWGVVRT 121
IE + ++ + +S + D + +A G + GKSS +N L
Sbjct: 27 NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 85
Query: 122 SDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK 176
+ K G+ + + DLPG G + Y+ +
Sbjct: 86 AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD----------TYLEKMKFYE 135
Query: 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
+I + K D ++ + + ++ V TK D
Sbjct: 136 YDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 173
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 59.3 bits (142), Expect = 1e-11
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 14/147 (9%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
I FAGRSNVGKS+++ LT + VR +PG+T+ I + +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLP 60
Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLI------------DTKWGVKPRDHELISLMERS 202
+EV++ ++ + ++ V +L+ K G P D E +
Sbjct: 61 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL 120
Query: 203 QTKYQVVLTKTDTVFPIDVARRAMQIE 229
V + K D + + + +
Sbjct: 121 DIPTIVAVNKLDKIKNVQEVINFLAEK 147
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 57.7 bits (138), Expect = 4e-11
Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 11/145 (7%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
+ ++ G N GKSS+L A+TR + + P T + N + L D+PG
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58
Query: 148 YGFAYAKEE--VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK 205
++ + + + + V V L + K +L+ R
Sbjct: 59 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV 118
Query: 206 YQVVLTKTDTVFPIDVARRAMQIEE 230
K D + V A +
Sbjct: 119 AL---NKVDLLEEEAVKALADALAR 140
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 53.8 bits (128), Expect = 1e-09
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
L ++ G +VGKS++L+ ++ + +D T N G + DLP
Sbjct: 1 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLP- 57
Query: 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
G + + ++ TRV + + +
Sbjct: 58 -GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGR 95
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 46.9 bits (110), Expect = 2e-07
Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 10/145 (6%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 151
+ G+ NVGKS++LN L + +D PG T+ + ++ G +VD G
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV--- 58
Query: 152 YAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVL 210
+ E D E ++ + V ++D + D +++ ++ + +
Sbjct: 59 --RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINK 116
Query: 211 TKTDTVFPIDVARRAMQIEEVIFYL 235
+ + + + + +
Sbjct: 117 VDVVEKINEEEIKNKLGTDRHMVKI 141
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 47.0 bits (110), Expect = 3e-07
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
IA GR NVGKS++LN L Q + TS K T+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTR 41
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 46.7 bits (109), Expect = 3e-07
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
+ GR NVGKS++ N L ++ D+ G+T+
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQD 41
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 45.4 bits (106), Expect = 1e-06
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 8/137 (5%)
Query: 90 PDLPE---IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLV 143
P++ + +A GR NVGKS++ NA+ + S PG T+ ++ G K V
Sbjct: 3 PEITDAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFV 61
Query: 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203
D G E + S V +++D G+ +D + LMER
Sbjct: 62 DTAGLRRKSRVEPRTVEKYSNYRVVDSIE-KADVVVIVLDATQGITRQDQRMAGLMERRG 120
Query: 204 TKYQVVLTKTDTVFPID 220
VV K D V +
Sbjct: 121 RASVVVFNKWDLVVHRE 137
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 43.1 bits (100), Expect = 8e-06
Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 10/134 (7%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
P ++ G + GK+++L+ + R + G+TQ I ++ + + +
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKF 63
Query: 153 AKEEVK--------DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT 204
+ E E L++D G KP+ E ++++ +T
Sbjct: 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123
Query: 205 KYQVVLTKTDTVFP 218
+ V K D +
Sbjct: 124 PFVVAANKIDRIHG 137
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 42.4 bits (98), Expect = 1e-05
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
+A G+ NVGKS++LN L V S +P
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQ 38
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 42.7 bits (99), Expect = 1e-05
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
P I AG N GK+S+L LT S +P + V L +
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTD------SVRPTVVSQEPLSAADYDGSGVTLVDFPGHV 57
Query: 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-----GVKPRDHELISLMERSQTKYQ 207
+ L + + V +D K + +
Sbjct: 58 KLR--YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115
Query: 208 VVLTKTDTVFPIDVARRAMQIEEVI 232
+ K++ ++ +E I
Sbjct: 116 IACNKSELFTARPPSKIKDALESEI 140
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 41.7 bits (96), Expect = 1e-05
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
+ AGR N GKSS+LNAL + +D G T+ +
Sbjct: 4 VVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLRE 42
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 41.7 bits (97), Expect = 3e-05
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
G NVGKS+++N L ++ + +T D+PG+T + + K+G +L L+D PG + +
Sbjct: 115 ALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFE 173
Query: 155 EE 156
+E
Sbjct: 174 DE 175
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 39.8 bits (92), Expect = 1e-04
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 6/129 (4%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
I G+ VGKSS +N++ + VV S +++
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 93
Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-----VV 209
+ D ++K ++ + + + + V D + + S K V
Sbjct: 94 GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 153
Query: 210 LTKTDTVFP 218
LT P
Sbjct: 154 LTHAQFSPP 162
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 36.9 bits (84), Expect = 8e-04
Identities = 18/146 (12%), Positives = 40/146 (27%), Gaps = 13/146 (8%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
+ F G + GK+ + L + +T + +K+ +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTG---QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES 59
Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-----VV 209
+ + S+ ++ V + VK L ++ S +
Sbjct: 60 LRFQLLD-----RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 114
Query: 210 LTKTDTVFPIDVARRAMQIEEVIFYL 235
K D Q+E+ + L
Sbjct: 115 CNKQDIAMAKSAKLIQQQLEKELNTL 140
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 36.0 bits (82), Expect = 0.003
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115
DLP+I G + GKSS+L + +
Sbjct: 23 DLPQIVVVGSQSSGKSSVLENIVGR 47
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 34.9 bits (80), Expect = 0.004
Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 35/158 (22%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDK---------------PGLTQTINFFKL--- 136
+ G + GK+++ ALT + + G+T +
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65
Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
VD PG+ + +K ++ + L++ G P+ E I
Sbjct: 66 KRHYSHVDCPGH-------------ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 112
Query: 197 SLMERSQTKYQV-VLTKTDTVFPIDVARRAMQIEEVIF 233
L + Y V + K D V D +E +
Sbjct: 113 LLARQVGVPYIVVFMNKVDMV---DDPELLDLVEMEVR 147
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 35.2 bits (80), Expect = 0.005
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTR 114
DLP+IA G + GKSS+L
Sbjct: 25 DLPQIAVVGGQSAGKSSVLENFVG 48
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 34.5 bits (78), Expect = 0.005
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKLGTKLCLVDLPG 147
I G S+VGK+S L G+ +TI KL + D G
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 33.7 bits (76), Expect = 0.009
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPG 147
I G S VGKSS+L T + G+ + + KL + D G
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 34.1 bits (77), Expect = 0.010
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 94 EIAFAGRSNVGKSSMLNALTR 114
EI G+ NVGKS+ +A T
Sbjct: 2 EIGVVGKPNVGKSTFFSAATL 22
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 32.9 bits (74), Expect = 0.018
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ---WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
+ G S VGKS +L + + T +T+ KL + D G
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 64
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 32.8 bits (73), Expect = 0.018
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
I G GK+++L L
Sbjct: 8 ILILGLDGAGKTTILYRLQVG 28
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 32.5 bits (73), Expect = 0.019
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG 149
+ G S VGKS++L+ TR + + G+ ++ K +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 32.3 bits (72), Expect = 0.024
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G N GK+++L +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGE 25
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 32.4 bits (73), Expect = 0.028
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPG 147
+ G S VGK+ +L + G +TI KL + D G
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 32.8 bits (74), Expect = 0.031
Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 20/140 (14%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVV--------RTSD------KPGLTQTINFFKLGTKL 140
++ + GKS++ ++L ++ G++ R +D + G+T L +++
Sbjct: 20 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 79
Query: 141 CLVDLPGYGFAYAKEEVKDAW------EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 194
D+ + E + +++DT GV +
Sbjct: 80 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 139
Query: 195 LISLMERSQTKYQVVLTKTD 214
++ + K VV+ K D
Sbjct: 140 VLRQALGERIKPVVVINKVD 159
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 32.3 bits (72), Expect = 0.032
Identities = 7/67 (10%), Positives = 18/67 (26%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
+ G N GK+++L + V + + I + + +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWN 77
Query: 155 EEVKDAW 161
+
Sbjct: 78 TYYTNTE 84
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.6 bits (70), Expect = 0.043
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ F G N GK+++L+ L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKND 23
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 31.5 bits (70), Expect = 0.045
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
I G GK+++L L G + T+ + D+ G
Sbjct: 3 ILMVGLDAAGKTTILYKLKL--GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 31.5 bits (70), Expect = 0.046
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRT 121
I G N GK+++L L + T
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHIT 45
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 32.1 bits (72), Expect = 0.050
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
+ G NVGKS+ A+T+ + ++ P T
Sbjct: 12 KTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYAT 45
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.3 bits (70), Expect = 0.060
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPG 147
I G + VGK+ ++ T+ G + +T+ KL + D G
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 31.2 bits (69), Expect = 0.064
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRT 121
+ G + GK+++ LT
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAH 34
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 31.2 bits (69), Expect = 0.069
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G GK++ +N +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASG 25
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 31.2 bits (70), Expect = 0.072
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGY 148
AG S VGKSS+LNA+ +R S+ T T K +VD PG+
Sbjct: 99 TMAGLSGVGKSSLLNAINPGL-KLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 157
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.8 bits (68), Expect = 0.080
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115
++ ++ G S VGK+S+++
Sbjct: 1 NILKVIILGDSGVGKTSLMHRYVND 25
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 30.7 bits (68), Expect = 0.081
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQW 116
+P +AFA S GK+++L L
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLIPAL 26
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.1 bits (67), Expect = 0.12
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ---WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
I G S VGKS +L + T +T++ KL + D G
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 30.3 bits (68), Expect = 0.16
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
G NVGKS++ NALT+
Sbjct: 5 CGIVGLPNVGKSTLFNALTKA 25
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 30.1 bits (66), Expect = 0.17
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G S VGK+S++N +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNK 25
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 29.3 bits (64), Expect = 0.23
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKSSM+ +
Sbjct: 5 MVVVGNGAVGKSSMIQRYCK 24
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 29.8 bits (67), Expect = 0.23
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 6/105 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
IAFAG S GKS++ + L R + G + +P I+ +++ V
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP--IDNISLENWRSQIGFVSQDSAIM 88
Query: 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
A E E L + + E+
Sbjct: 89 AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 0.23
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 95 IAFAGRSNVGKSSMLNALTR----QWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
+ G S VGK+ +L + T + ++ + KL + D G
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 29.7 bits (66), Expect = 0.27
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKL-CLVDLPGYG 149
FAG+S VGKSS+LNA++ + + G T + + T + D PG+
Sbjct: 100 TVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFS 159
Query: 150 FA----YAKEEVKDAWEEL 164
+EE+ + ++
Sbjct: 160 SLEFTDIEEEELGYTFPDI 178
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.0 bits (63), Expect = 0.31
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++ N
Sbjct: 6 VVLIGEQGVGKSTLANIFAG 25
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 28.9 bits (63), Expect = 0.33
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 91 DLPE--IAFAGRSNVGKSSMLNALTR 114
+LP + G VGKS++ +
Sbjct: 1 NLPTYKLVVVGDGGVGKSALTIQFFQ 26
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 29.1 bits (64), Expect = 0.34
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK---LCLVDLPG 147
G + GKS +L+ + ++ G+ +G K L + D G
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 28.8 bits (63), Expect = 0.40
Identities = 11/54 (20%), Positives = 17/54 (31%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
I G SNVGK+ + RT G+ + + + L
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 58
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.5 bits (62), Expect = 0.42
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++
Sbjct: 4 VLLLGAPGVGKSALARIFGG 23
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.9 bits (63), Expect = 0.44
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW 116
+ F G N GK+++L+ L
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDR 37
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 28.3 bits (62), Expect = 0.51
Identities = 8/55 (14%), Positives = 18/55 (32%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG 149
G VGKS +L+ T + + G+ ++ + + +
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 61
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.0 bits (61), Expect = 0.69
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++ L +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQ 25
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 28.3 bits (63), Expect = 0.70
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
+A G + GK+S+L + + G+++ S + ++ GT + + +G
Sbjct: 65 LAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGT---IKENIIFGV 121
Query: 151 AYAKEEVKDAWEE 163
+Y + K +
Sbjct: 122 SYDEYRYKSVVKA 134
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.1 bits (61), Expect = 0.75
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++ +
Sbjct: 9 LVVVGGGGVGKSALTIQFIQ 28
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 27.8 bits (60), Expect = 0.84
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
IA G +VGKSS+
Sbjct: 7 IAILGYRSVGKSSLTIQFVE 26
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.0 bits (61), Expect = 0.85
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 95 IAFAGRSNVGKSSMLNALTR--QWGVVRT 121
I G GK+ + LTR + V T
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPT 33
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.6 bits (60), Expect = 1.00
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+A G VGKSS++ +
Sbjct: 5 VAVFGAGGVGKSSLVLRFVK 24
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.7 bits (60), Expect = 1.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
G VGK+ +L + T
Sbjct: 8 CVVVGDGAVGKTCLLISYTT 27
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.6 bits (60), Expect = 1.1
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++
Sbjct: 6 VVVLGSGGVGKSALTVQFVT 25
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.5 bits (60), Expect = 1.1
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW 116
G + GK++++
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAA 25
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 27.3 bits (59), Expect = 1.2
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G + VGKSS++
Sbjct: 7 VCLLGDTGVGKSSIMWRFVED 27
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.3 bits (59), Expect = 1.2
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G GK+ +L ++
Sbjct: 5 LVIVGDGACGKTCLLIVNSK 24
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 27.3 bits (59), Expect = 1.2
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTR 114
+ P + + G VGK+ +L +
Sbjct: 2 AHGPGALMLKCVVVGDGAVGKTCLLMSYAN 31
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 27.2 bits (59), Expect = 1.2
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ F G +VGK+S++
Sbjct: 3 LVFLGEQSVGKTSLITRFMYD 23
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 27.2 bits (59), Expect = 1.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G VGKSS++N
Sbjct: 9 VILLGDGGVGKSSLMNRYVTN 29
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.2 bits (59), Expect = 1.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G S VGK++ L T
Sbjct: 8 LLALGDSGVGKTTFLYRYTDN 28
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 27.2 bits (59), Expect = 1.4
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++
Sbjct: 7 VIMVGSGGVGKSALTLQFMY 26
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 1.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G S VGKSS++ +
Sbjct: 9 LVLLGESAVGKSSLVLRFVK 28
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 1.5
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G GK++ +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLT 25
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.9 bits (58), Expect = 1.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G + VGKSS++
Sbjct: 6 LVLLGEAAVGKSSIVLRFVS 25
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 26.8 bits (58), Expect = 1.6
Identities = 14/139 (10%), Positives = 36/139 (25%), Gaps = 2/139 (1%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
I G GK+++L L V +T+ + + + V +
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWR 74
Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTKYQVVLTKT 213
+ + R + + + RD ++ + + +
Sbjct: 75 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI 134
Query: 214 DTVFPIDVAR-RAMQIEEV 231
+ R R ++
Sbjct: 135 QEKLGLTRIRDRNWYVQPS 153
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.9 bits (58), Expect = 1.7
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 92 LPE--IAFAGRSNVGKSSMLNALTRQ 115
+PE + G + GKSS+++
Sbjct: 3 IPELRLGVLGDARSGKSSLIHRFLTG 28
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.9 bits (58), Expect = 1.9
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
I G S GK+++L+ +
Sbjct: 5 IVVVGDSQCGKTALLHVFAKD 25
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.9 bits (58), Expect = 1.9
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++ +
Sbjct: 8 LVVVGGGGVGKSALTIQFIQ 27
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 1.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+A GR+ VGKS+++
Sbjct: 5 LAIFGRAGVGKSALVVRFLT 24
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.8 bits (58), Expect = 2.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
G + VGKS +L T +
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDK 26
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.5 bits (57), Expect = 2.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
G VGK+ +L + T
Sbjct: 6 CVVVGDGAVGKTCLLISYTT 25
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.4 bits (57), Expect = 2.3
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGK+S++
Sbjct: 6 VVLLGEGCVGKTSLVLRYCE 25
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.1 bits (56), Expect = 2.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++ +
Sbjct: 6 LVVLGSGGVGKSALTVQFVQ 25
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 26.3 bits (58), Expect = 3.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTS 122
+A GRS GKS++ + +TR + +
Sbjct: 44 VALVGRSGSGKSTIASLITRFYDIDEGH 71
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 26.5 bits (57), Expect = 3.1
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 16/64 (25%)
Query: 63 RERIEENIFRNKLEFFAAAKVSSSFPAPDLPE----------IAFAGRSNVGKSSMLNAL 112
RERI E++ + + + S + + I S +GKS+ +
Sbjct: 2 RERIREHLSSEE----SVGLLFSGCT--GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQ 55
Query: 113 TRQW 116
QW
Sbjct: 56 ALQW 59
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 26.1 bits (56), Expect = 3.1
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW 116
I G GK+++L L
Sbjct: 20 ILILGLDGAGKTTILYRLQIGE 41
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 26.3 bits (58), Expect = 3.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+AF G S GKS+++N + R
Sbjct: 47 VAFVGMSGGGKSTLINLIPR 66
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.1 bits (56), Expect = 3.2
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW 116
I G VGK++++ + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERL 24
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.0 bits (57), Expect = 3.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW 116
I GRS GKS++ + R +
Sbjct: 32 IGIVGRSGSGKSTLTKLIQRFY 53
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 26.2 bits (56), Expect = 3.6
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWG 117
+A G + GKS ++N L +
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFN 32
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.0 bits (57), Expect = 4.0
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW 116
A G + GKS++ L +
Sbjct: 43 TALVGPNGSGKSTVAALLQNLY 64
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 221
Score = 25.7 bits (55), Expect = 4.5
Identities = 11/72 (15%), Positives = 23/72 (31%)
Query: 158 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217
+D ++ V E + + ++ V + P L E K L V
Sbjct: 26 RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYSRVR 85
Query: 218 PIDVARRAMQIE 229
+ A + ++
Sbjct: 86 NLHAAVKEVKTR 97
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.6 bits (55), Expect = 5.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 95 IAFAGRSNVGKSSMLNALT 113
I G GKS+ L +
Sbjct: 5 ILLLGAGESGKSTFLKQMR 23
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.3 bits (54), Expect = 6.2
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G GKS+ + +
Sbjct: 5 LLLLGTGESGKSTFIKQMRI 24
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 25.1 bits (54), Expect = 8.5
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 158 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 194
++ LV+ + + +VS K V ++ P++H
Sbjct: 46 MTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHP 82
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 24.9 bits (53), Expect = 8.8
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 95 IAFAGRSNVGKSSMLNALT 113
+ G GKS+++ +
Sbjct: 5 LLLLGAGESGKSTIVKQMK 23
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 193
Score = 24.8 bits (54), Expect = 9.5
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL-----MERSQ 203
A ++EE++ + +++EY+ +K + + + +ERS
Sbjct: 3 ALSEEELEKKSKAIIEEYLHLN-DMKEAVQCVQ-ELASPSLLFIFVRHGVESTLERSA 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 845,069
Number of extensions: 38151
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 102
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)