Query 026539
Match_columns 237
No_of_seqs 186 out of 335
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:20:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10513 EPL1: Enhancer of pol 100.0 6.8E-31 1.5E-35 218.2 9.9 143 6-159 1-160 (160)
2 KOG2261 Polycomb enhancer prot 99.0 7.8E-11 1.7E-15 117.4 1.2 104 98-228 1-107 (716)
3 KOG2261 Polycomb enhancer prot 99.0 1.1E-10 2.3E-15 116.4 1.9 193 1-218 47-252 (716)
4 KOG0954 PHD finger protein [Ge 98.0 8.9E-06 1.9E-10 81.3 5.6 92 74-166 149-256 (893)
5 COG5141 PHD zinc finger-contai 97.4 0.00015 3.3E-09 70.0 4.4 89 119-214 128-240 (669)
6 KOG0955 PHD finger protein BR1 97.4 4.2E-05 9.1E-10 79.9 0.6 106 102-214 137-266 (1051)
7 KOG0954 PHD finger protein [Ge 88.9 0.37 8.1E-06 49.2 3.4 41 181-225 486-529 (893)
8 COG2896 MoaA Molybdenum cofact 58.3 6.9 0.00015 36.6 2.1 53 101-158 5-57 (322)
9 PF14164 YqzH: YqzH-like prote 53.7 37 0.00081 24.4 4.8 21 141-161 23-43 (64)
10 COG4043 Preprotein translocase 45.6 27 0.00058 27.5 3.2 26 179-215 74-99 (111)
11 PF09862 DUF2089: Protein of u 35.0 95 0.0021 24.7 5.0 17 125-141 33-49 (113)
12 PF10176 DUF2370: Protein of u 34.2 20 0.00043 32.1 1.1 20 201-220 208-227 (233)
13 PF06252 DUF1018: Protein of u 32.7 56 0.0012 25.5 3.4 36 126-161 1-39 (119)
14 TIGR00244 transcriptional regu 29.6 1.3E+02 0.0028 25.1 5.1 53 141-207 76-132 (147)
15 PF12959 DUF3848: Protein of u 27.9 64 0.0014 25.3 2.8 27 182-213 51-77 (101)
16 PF11431 Transport_MerF: Membr 25.6 60 0.0013 21.9 2.0 12 204-215 35-46 (46)
17 cd03515 Link_domain_TSG_6_like 25.3 90 0.002 24.0 3.2 31 181-212 13-43 (93)
18 COG5388 Uncharacterized protei 24.7 52 0.0011 28.9 2.0 16 203-218 27-42 (209)
19 cd03517 Link_domain_CSPGs_modu 24.4 83 0.0018 24.3 2.9 31 181-212 13-43 (95)
20 PF04217 DUF412: Protein of un 24.2 42 0.00091 27.9 1.3 23 208-230 81-103 (143)
21 smart00445 LINK Link (Hyaluron 24.1 89 0.0019 24.1 3.0 32 180-212 13-44 (94)
22 PF10044 Ret_tiss: Retinal tis 23.9 1.9E+02 0.004 22.4 4.7 46 125-193 43-88 (95)
23 cd03519 Link_domain_HAPLN_modu 23.6 1.1E+02 0.0024 23.5 3.4 31 179-210 8-38 (91)
24 cd03520 Link_domain_CSPGs_modu 22.2 1.2E+02 0.0027 23.4 3.4 32 180-212 9-40 (96)
25 cd03518 Link_domain_HAPLN_modu 21.9 1.1E+02 0.0023 23.7 3.1 31 181-212 13-43 (95)
26 PF00046 Homeobox: Homeobox do 21.7 2.4E+02 0.0052 18.3 5.7 49 141-213 4-52 (57)
27 PRK01816 hypothetical protein; 20.5 53 0.0011 27.3 1.2 24 208-231 80-103 (143)
28 cd01102 Link_Domain The link d 20.4 1.2E+02 0.0026 23.3 3.0 33 179-212 11-43 (92)
29 KOG3335 Predicted coiled-coil 20.0 79 0.0017 27.2 2.1 58 149-214 33-96 (181)
No 1
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=99.97 E-value=6.8e-31 Score=218.18 Aligned_cols=143 Identities=37% Similarity=0.627 Sum_probs=111.0
Q ss_pred cCCCCCCCCCCcceeccCCCCCCCCCCCCCCCCccccCCCCCccccccchhhhccCCCcccCccccccccC---------
Q 026539 6 IRPRPLDIHKKLPIVKSFKDFEDDNNDTNPPTSSIAANSTPSATTTRNSHLLRLNSSSFDHDSQEVHQVPS--------- 76 (237)
Q Consensus 6 fR~R~ld~~k~L~I~~~~~dl~d~~~~~~~~~~~~~v~~~p~~~e~~~~~~~~~~~~~~k~Ee~E~h~~~~--------- 76 (237)
||+|+||+++||+||++ .|+++++..+.....+.+++++++|++.++.. ...+.|+|++..
T Consensus 1 fR~~~ld~~~~l~I~~~-~d~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~---------~~~e~e~~~q~~~~~~~~~~~ 70 (160)
T PF10513_consen 1 FRPRRLDIKKPLPIFRE-EDLDDLDESEDSSNKNQAVPQSPTGVEKEEKL---------SKQEWEKHLQKPISASQNSKS 70 (160)
T ss_pred CCCCCCCCCCCeeEEec-hhcccccccccccccccccccccCCccchhhc---------cccccccccccccchhhhhhc
Confidence 99999999999999998 88888876432111233578888888643110 112456676542
Q ss_pred --CCCCCCCCCCcceEecCCccccCCCCCCCCccEEeccchhccC-CccccCCChhhHHHHHHHhcCC-----CCCCHHH
Q 026539 77 --KKSASEIPTPQFVVVDTYERDYSQTFDQPTSYLRARGARAELG-DFVEYDLDNEDEDWLDEFNRDQ-----KLLPPEK 148 (237)
Q Consensus 77 --~~~~~~IPtP~~~~v~~yd~~Y~~~F~~P~sYIr~~~~~~E~~-~~~eYDMDeeDe~wL~~~N~~r-----~~lsed~ 148 (237)
+.....||+|.++.++ |+..|...|.+|.+||||+....+++ .+|+||||++|+.||+.+|+++ ..||++.
T Consensus 71 ~~~~~~~~IP~P~~~~~~-~~~~~~~~f~~p~~yi~~~~~~~e~~~~~veYDmDeeD~~wL~~~N~~r~~~~~~~ls~~~ 149 (160)
T PF10513_consen 71 KKKKEKKKIPTPSVRVVD-YEKPYSPPFKRPSSYIRFSEKSVEDLDEGVEYDMDEEDEEWLELLNKKRKSDGLEPLSEED 149 (160)
T ss_pred ccccccccCCCCceEEec-CcCCCCCcccCCccccccccCCHHHhccCcCCCCchHHHHHHHHHHHHhhhcCCCCCCHHH
Confidence 2356789999999888 99999999999999999995333444 4999999999999999999863 3899999
Q ss_pred HHHHHHHHhhc
Q 026539 149 FETLMFKLEVL 159 (237)
Q Consensus 149 FE~imd~lEk~ 159 (237)
||.|||+|||.
T Consensus 150 FE~~md~lEke 160 (160)
T PF10513_consen 150 FEIIMDRLEKE 160 (160)
T ss_pred HHHHHHHHhCC
Confidence 99999999984
No 2
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=99.01 E-value=7.8e-11 Score=117.44 Aligned_cols=104 Identities=25% Similarity=0.257 Sum_probs=86.5
Q ss_pred cCCCCCCCCccEEeccchhccCCccccCCChhhHHHHHHHhcCCCCCCHHHHHHHHHHHhhccHHhhhhhcCCCCCCCCC
Q 026539 98 YSQTFDQPTSYLRARGARAELGDFVEYDLDNEDEDWLDEFNRDQKLLPPEKFETLMFKLEVLDHKARERAGLITPTLGSP 177 (237)
Q Consensus 98 Y~~~F~~P~sYIr~~~~~~E~~~~~eYDMDeeDe~wL~~~N~~r~~lsed~FE~imd~lEk~~~~~~~~~g~~~P~~~~d 177 (237)
|++.|+.|...|+..... -+.++++||||++||.||+. ++.+.+..||.|+|++|+.+.
T Consensus 1 y~~~~k~~r~~~~~~~~~-l~~~~p~yd~D~~de~~~s~----~~~s~~~~~e~~~dR~e~~s~---------------- 59 (716)
T KOG2261|consen 1 YPKAAKMPRQLIHGQPIW-LDREKPRYDHDSEDEDFLSV----QMESKPLKFERMRDRLEKCSS---------------- 59 (716)
T ss_pred CCcccccchhhhcccccc-cCCCCCcccccchhHHHhhh----cccccchhHHHHhcccccCCc----------------
Confidence 678899999999887665 46789999999999999997 688999999999999999763
Q ss_pred CCccCCHHHHHHHHHhhcccchhhHHHHHHHHHhhhc--CCC-cccchhhhhhh
Q 026539 178 IPILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKVW--FKI-LNVSLNLMYQF 228 (237)
Q Consensus 178 ~~~ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~KR~--g~p-L~p~Lk~~~~~ 228 (237)
.+.+++++++..|.+. ....-.||+||..||. ..| |+|+++. |.-
T Consensus 60 -~~~i~l~edk~~l~~d----d~~~v~~~e~~veK~~~~e~~~L~p~v~~-~~~ 107 (716)
T KOG2261|consen 60 -HQKIYLEEDKKDLDED----DQRSVEVYEYWVEKREEKEVPSLIPPVKT-EKR 107 (716)
T ss_pred -cceecchhhhhccccc----cceeeeeeehhhhhhhhhccccccCcccc-ccC
Confidence 2467899999888874 4455699999999994 445 9999998 443
No 3
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=99.00 E-value=1.1e-10 Score=116.44 Aligned_cols=193 Identities=22% Similarity=0.292 Sum_probs=115.4
Q ss_pred CCCCccCCCCCCCCCCcceeccCCCCCCCCCCCCCCCCccccCCCCCccccccchhhhccCCCcccCccccc-cccCCCC
Q 026539 1 MSRLSIRPRPLDIHKKLPIVKSFKDFEDDNNDTNPPTSSIAANSTPSATTTRNSHLLRLNSSSFDHDSQEVH-QVPSKKS 79 (237)
Q Consensus 1 msk~sfR~R~ld~~k~L~I~~~~~dl~d~~~~~~~~~~~~~v~~~p~~~e~~~~~~~~~~~~~~k~Ee~E~h-~~~~~~~ 79 (237)
|++.++|.++++.++++++-.+..||.+++. +-|.- .+.+ ++ |.++.|+| |......
T Consensus 47 ~e~~~dR~e~~s~~~~i~l~edk~~l~~dd~--------~~v~~----~e~~---------ve-K~~~~e~~~L~p~v~~ 104 (716)
T KOG2261|consen 47 FERMRDRLEKCSSHQKIYLEEDKKDLDEDDQ--------RSVEV----YEYW---------VE-KREEKEVPSLIPPVKT 104 (716)
T ss_pred HHHHhcccccCCccceecchhhhhccccccc--------eeeee----eehh---------hh-hhhhhccccccCcccc
Confidence 4667778888877777777766656655322 11111 1233 33 88888999 5443332
Q ss_pred CCCCCCCcceEec------CCccccCC--CCCCCCccEEeccchhccC-CccccCCChhhHHHHHHHhcCCCCCCHHHHH
Q 026539 80 ASEIPTPQFVVVD------TYERDYSQ--TFDQPTSYLRARGARAELG-DFVEYDLDNEDEDWLDEFNRDQKLLPPEKFE 150 (237)
Q Consensus 80 ~~~IPtP~~~~v~------~yd~~Y~~--~F~~P~sYIr~~~~~~E~~-~~~eYDMDeeDe~wL~~~N~~r~~lsed~FE 150 (237)
++++|..+.-+ .+++.+.. .+..+.+|=++-.++.+.. ....|+|+-.++.|.-.++..-..|.++.||
T Consensus 105 --~~~~~~~s~~py~~~rr~tekmqtrkn~~nd~aSyek~l~~~~dl~~a~t~~em~~~~e~tk~~L~~~t~ei~~kr~e 182 (716)
T KOG2261|consen 105 --EKRDGSASNKPYVAFRRRTEKMQTRKNRKNDEASYEKMLKLRRDLSRAYTILEMEKRREKTKRELLEKTSEISEKRFE 182 (716)
T ss_pred --ccCCccccCCchhhhhhhhhccccccccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHhhcchhhhhhhhhh
Confidence 55555555433 23333322 2444555554444432221 3345555556666666665555567777777
Q ss_pred HHHHHHhhccHHhhhhhcCCCCCCCCCCC-ccCCHHHHHHHHHhhcccchhhHHHHHHHHHhhhc--CCCc
Q 026539 151 TLMFKLEVLDHKARERAGLITPTLGSPIP-ILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKVW--FKIL 218 (237)
Q Consensus 151 ~imd~lEk~~~~~~~~~g~~~P~~~~d~~-~ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~KR~--g~pL 218 (237)
......|-.++...++.|.+.|+++.|.. ..++...+...+... .....++.++|+||+.||. |+|.
T Consensus 183 ~~df~~~~~s~~~~~~~~~~~P~~~~~~~i~~~s~~~~~~~l~~~-~~~~~~~~~~~~y~r~k~~~~~~~~ 252 (716)
T KOG2261|consen 183 MGDFEGEMSSEVEPERKGAYKPLLSAPFAIILLSPMDTMEALKLR-VLKESFFSSKYDYWREKRKIEGGPK 252 (716)
T ss_pred hcccccccccccchhhhhccCccccCcchhhcCCHHHHHhhhhhh-hhhhhhhhHHHHHHhhhccccCCch
Confidence 77766676777777888888999999876 344455555555543 3445677799999999993 5555
No 4
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.99 E-value=8.9e-06 Score=81.29 Aligned_cols=92 Identities=24% Similarity=0.386 Sum_probs=73.9
Q ss_pred ccCCCCCCCCCCCcceEecCCccccCCCCCCCCccEEeccch-hc----------cCCccccCCChhhHHHHHHHhcCCC
Q 026539 74 VPSKKSASEIPTPQFVVVDTYERDYSQTFDQPTSYLRARGAR-AE----------LGDFVEYDLDNEDEDWLDEFNRDQK 142 (237)
Q Consensus 74 ~~~~~~~~~IPtP~~~~v~~yd~~Y~~~F~~P~sYIr~~~~~-~E----------~~~~~eYDMDeeDe~wL~~~N~~r~ 142 (237)
++..++...+|+|.+++++..-. -...|++|+.||+.+... .| ....|.||+|..|..||+.+|..+.
T Consensus 149 vQvpaspd~lpqp~v~~dse~v~-~~~~fs~pkkyivc~~~~~~e~~yn~~~~~lae~tcrydid~~d~awL~~~n~e~~ 227 (893)
T KOG0954|consen 149 VQVPASPDTLPQPSVRVDSEDVQ-PETDFSRPKKYIVCSDGEVPELGYNLLIKDLAESTCRYDIDDMDPAWLQLVNEERA 227 (893)
T ss_pred ccccCCCCcCCCcceeccchhcc-hhhhhcCCcceEEeCCCCCcccchhhhHHHHhhhhhhcccccccHHHHHHhcchHH
Confidence 34577889999999988763211 235799999999987542 11 3478999999999999999998653
Q ss_pred -----CCCHHHHHHHHHHHhhccHHhhhh
Q 026539 143 -----LLPPEKFETLMFKLEVLDHKARER 166 (237)
Q Consensus 143 -----~lsed~FE~imd~lEk~~~~~~~~ 166 (237)
.|.+-.||+|+..||..|+++...
T Consensus 228 ~~G~~~l~~~~~eRiieelE~~c~kqi~~ 256 (893)
T KOG0954|consen 228 EMGSLELDEGTFERIIEELERRCKKQINH 256 (893)
T ss_pred hhCCcccchHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999988655
No 5
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.41 E-value=0.00015 Score=70.00 Aligned_cols=89 Identities=26% Similarity=0.314 Sum_probs=62.2
Q ss_pred CCccccCCChhhHHHHHHHhcC--CCCCCHHHHHHHHHHHhhccHHhhhhhcC----CCCCCCCCCCccCCHHHHHHHHH
Q 026539 119 GDFVEYDLDNEDEDWLDEFNRD--QKLLPPEKFETLMFKLEVLDHKARERAGL----ITPTLGSPIPILLQLGVAIEALK 192 (237)
Q Consensus 119 ~~~~eYDMDeeDe~wL~~~N~~--r~~lsed~FE~imd~lEk~~~~~~~~~g~----~~P~~~~d~~~ils~~ea~~~l~ 192 (237)
...|.||||+-|+-||.=+|+. ...+|++-||++|++||++++.-. +|+ ..|.-..| +++.+--.+.
T Consensus 128 ~f~v~YdlDe~D~m~l~Ylne~~~~e~vS~e~fEii~t~lE~EWf~~e--~~lp~k~vepi~~~d-----~~d~~C~~c~ 200 (669)
T COG5141 128 FFSVIYDLDEYDTMWLRYLNESAIDENVSEEAFEIIVTRLEKEWFFFE--HGLPDKHVEPIEPSD-----EFDDICTKCT 200 (669)
T ss_pred cCceeecccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh--ccCccccccccCCch-----hhhhhhHhcc
Confidence 4668999999999999999975 347999999999999999987642 122 12332222 3555544443
Q ss_pred hhc-----------ccchhhHHHHHH-------HHHhhhc
Q 026539 193 DQT-----------TVGYAVFQSVYH-------YWKEKVW 214 (237)
Q Consensus 193 ~~~-----------~~~~~~~~~VY~-------yWk~KR~ 214 (237)
+.. ++...+++.+|. .|..||.
T Consensus 201 ~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkC 240 (669)
T COG5141 201 STHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKC 240 (669)
T ss_pred ccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhh
Confidence 321 234457888886 9999984
No 6
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.41 E-value=4.2e-05 Score=79.85 Aligned_cols=106 Identities=27% Similarity=0.291 Sum_probs=77.2
Q ss_pred CCCCCccEEeccch-hccCCccccCCChhhHHHHHHHhcCC-----CCCCHHHHHHHHHHHhhccHHhhhhhcCCCCCCC
Q 026539 102 FDQPTSYLRARGAR-AELGDFVEYDLDNEDEDWLDEFNRDQ-----KLLPPEKFETLMFKLEVLDHKARERAGLITPTLG 175 (237)
Q Consensus 102 F~~P~sYIr~~~~~-~E~~~~~eYDMDeeDe~wL~~~N~~r-----~~lsed~FE~imd~lEk~~~~~~~~~g~~~P~~~ 175 (237)
-.+|..|.++.... +.+...++||||++|..||..+|..+ ..++.+.||.+||++||.+++...-.|..++ +
T Consensus 137 ~~~p~~~~~~~~~~~~~~~~e~~y~~de~d~~wl~~~n~~~~~~~~~~v~~~~~~~~~dr~eke~~f~~~e~~~~~~-~- 214 (1051)
T KOG0955|consen 137 PPRPNFYYDEIEKSKETLDEEVEYDLDEEDYSWLDIMNELRTRNGVFDVSIDTFELLVDRLEKESYFKNYELGDPKD-A- 214 (1051)
T ss_pred CCCCCcchhhhccchhhhccccccchHHHHHHHHhhhhHHHhhcCCccccccchhhhhhhHHHHHHhhhhhccCCCc-c-
Confidence 45577777777663 35778899999999999999998753 3889999999999999999998766665444 2
Q ss_pred CCCCccCCHHHHHHHHHhh-----------cccchhhHHHHHH-------HHHhhhc
Q 026539 176 SPIPILLQLGVAIEALKDQ-----------TTVGYAVFQSVYH-------YWKEKVW 214 (237)
Q Consensus 176 ~d~~~ils~~ea~~~l~~~-----------~~~~~~~~~~VY~-------yWk~KR~ 214 (237)
.+..|.+-..+.+. +.+...+|+.+|+ -|.+||+
T Consensus 215 -----~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~C 266 (1051)
T KOG0955|consen 215 -----LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRC 266 (1051)
T ss_pred -----ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhh
Confidence 22233332333322 1345678999998 8999984
No 7
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=88.93 E-value=0.37 Score=49.18 Aligned_cols=41 Identities=22% Similarity=0.168 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHhhcccchhhHHHHHHHHHhhhc---CCCcccchhhh
Q 026539 181 LLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKVW---FKILNVSLNLM 225 (237)
Q Consensus 181 ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~KR~---g~pL~p~Lk~~ 225 (237)
+..+++..+.|. . ...++-+||+|||.||+ ++||+|...-+
T Consensus 486 ~v~~~diae~l~-~---~e~~vs~iynywklkrks~~n~~lippk~d~ 529 (893)
T KOG0954|consen 486 IVRNEDIAELLS-M---PEFAVSAIYNYWKLKRKSRFNKELIPPKSDE 529 (893)
T ss_pred hhhHHHHHHHhc-C---chHHHHHHHHHHHHhhhccCCCcCCCCcchh
Confidence 344555544444 2 13355699999999985 69999988754
No 8
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=58.29 E-value=6.9 Score=36.59 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=41.4
Q ss_pred CCCCCCccEEeccchhccCCccccCCChhhHHHHHHHhcCCCCCCHHHHHHHHHHHhh
Q 026539 101 TFDQPTSYLRARGARAELGDFVEYDLDNEDEDWLDEFNRDQKLLPPEKFETLMFKLEV 158 (237)
Q Consensus 101 ~F~~P~sYIr~~~~~~E~~~~~eYDMDeeDe~wL~~~N~~r~~lsed~FE~imd~lEk 158 (237)
.|.+|-.|+|.|-|. .-.-.|-|+|-+.+..|+.. ..-||.++.+.+++.|=+
T Consensus 5 ~~gR~~~~LRiSvTd-rCNfrC~YCm~eg~~~~~~~----~~~Ls~eei~~~~~~~~~ 57 (322)
T COG2896 5 RFGRPVRYLRISVTD-RCNFRCTYCMPEGPLAFLPK----EELLSLEEIRRLVRAFAE 57 (322)
T ss_pred ccCCEeceEEEEEec-CcCCcccccCCCCCcccCcc----cccCCHHHHHHHHHHHHH
Confidence 589999999999884 34477999999997777763 357788888888876654
No 9
>PF14164 YqzH: YqzH-like protein
Probab=53.66 E-value=37 Score=24.43 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHhhccH
Q 026539 141 QKLLPPEKFETLMFKLEVLDH 161 (237)
Q Consensus 141 r~~lsed~FE~imd~lEk~~~ 161 (237)
..+||+.+|+.++.++.-...
T Consensus 23 ~~pls~~E~~~L~~~i~~~~~ 43 (64)
T PF14164_consen 23 CMPLSDEEWEELCKHIQERKN 43 (64)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 458999999999988876543
No 10
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.61 E-value=27 Score=27.55 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=19.9
Q ss_pred CccCCHHHHHHHHHhhcccchhhHHHHHHHHHhhhcC
Q 026539 179 PILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKVWF 215 (237)
Q Consensus 179 ~~ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~KR~g 215 (237)
+...|++++.. .+..+|+-|+.+|+|
T Consensus 74 p~~~S~ee~l~-----------~~~~~Y~~~kE~~yG 99 (111)
T COG4043 74 PDVPSFEEGLR-----------RYRNFYPSEKEKRYG 99 (111)
T ss_pred CCCccHHHHHH-----------HHHHhCcHhHhhccc
Confidence 34678888744 455889999999987
No 11
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=35.04 E-value=95 Score=24.75 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=13.3
Q ss_pred CCChhhHHHHHHHhcCC
Q 026539 125 DLDNEDEDWLDEFNRDQ 141 (237)
Q Consensus 125 DMDeeDe~wL~~~N~~r 141 (237)
.|+.||.+|+..|=..+
T Consensus 33 ~L~~E~~~Fi~~Fi~~r 49 (113)
T PF09862_consen 33 RLSPEQLEFIKLFIKNR 49 (113)
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 48899999999985443
No 12
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=34.21 E-value=20 Score=32.09 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhhhcCCCccc
Q 026539 201 VFQSVYHYWKEKVWFKILNV 220 (237)
Q Consensus 201 ~~~~VY~yWk~KR~g~pL~p 220 (237)
++..|++||+-||+-+.++.
T Consensus 208 ~irsi~dY~rVKR~Er~iL~ 227 (233)
T PF10176_consen 208 FIRSIIDYWRVKRMERLILS 227 (233)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 55699999999997655543
No 13
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=32.70 E-value=56 Score=25.54 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=27.2
Q ss_pred CChhhHH-HHHHHhcC--CCCCCHHHHHHHHHHHhhccH
Q 026539 126 LDNEDED-WLDEFNRD--QKLLPPEKFETLMFKLEVLDH 161 (237)
Q Consensus 126 MDeeDe~-wL~~~N~~--r~~lsed~FE~imd~lEk~~~ 161 (237)
||+|+-. +|....++ ...||..+++.+|+.|++.-+
T Consensus 1 lddd~YR~~L~~~~Gk~S~k~lt~~el~~vl~~l~~~G~ 39 (119)
T PF06252_consen 1 LDDDTYRALLQRVTGKSSSKDLTEAELEKVLDELKRLGF 39 (119)
T ss_pred CCHHHHHHHHHHHhChhhHHHCCHHHHHHHHHHHHHccC
Confidence 6777755 66665443 359999999999999998654
No 14
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=29.64 E-value=1.3e+02 Score=25.13 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHhhccHHhhhhhcCCCCCCCCCCCccCCHHH----HHHHHHhhcccchhhHHHHHH
Q 026539 141 QKLLPPEKFETLMFKLEVLDHKARERAGLITPTLGSPIPILLQLGV----AIEALKDQTTVGYAVFQSVYH 207 (237)
Q Consensus 141 r~~lsed~FE~imd~lEk~~~~~~~~~g~~~P~~~~d~~~ils~~e----a~~~l~~~~~~~~~~~~~VY~ 207 (237)
+.++|.+++|.+++.+|...... |. .-++-.+ +.+.|.+++.+-+-.|+.||-
T Consensus 76 KRpVs~e~ie~~v~~Ie~~l~~~----~~----------~EI~S~~IGe~Vm~~L~~lD~VAYVRFASVYr 132 (147)
T TIGR00244 76 KRPVSFDDLEHAINHIEAQLRAQ----GE----------REVPSELIGQMVMQYLKKLDEVAYIRFASVYR 132 (147)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc----CC----------CcccHHHHHHHHHHHHhhcCcchhhhhhhhcC
Confidence 45899999999999999976533 21 1233332 345566666555667888884
No 15
>PF12959 DUF3848: Protein of unknown function (DUF3848); InterPro: IPR024380 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences[].
Probab=27.94 E-value=64 Score=25.29 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHhhcccchhhHHHHHHHHHhhh
Q 026539 182 LQLGVAIEALKDQTTVGYAVFQSVYHYWKEKV 213 (237)
Q Consensus 182 ls~~ea~~~l~~~~~~~~~~~~~VY~yWk~KR 213 (237)
++-.+|..+|+. +..+++||.+|..+-
T Consensus 51 l~~~qa~ALl~s-----p~PL~~iY~~w~~~e 77 (101)
T PF12959_consen 51 LPDQQAKALLKS-----PSPLADIYREWEKKE 77 (101)
T ss_pred CCHHHHHHHHcC-----CChHHHHHHHHHhcc
Confidence 344455555542 457889999999873
No 16
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=25.58 E-value=60 Score=21.88 Aligned_cols=12 Identities=17% Similarity=0.653 Sum_probs=10.1
Q ss_pred HHHHHHHhhhcC
Q 026539 204 SVYHYWKEKVWF 215 (237)
Q Consensus 204 ~VY~yWk~KR~g 215 (237)
.+|..|+++|++
T Consensus 35 t~yal~r~~~~~ 46 (46)
T PF11431_consen 35 TIYALWRRRRKQ 46 (46)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHHHhccC
Confidence 999999999853
No 17
>cd03515 Link_domain_TSG_6_like This is the extracellular link domain of the type found in human TSG-6. The link domain is a hyaluronan (HA)-binding domain. TSG-6 is the protein product of tumor necrosis factor-stimulated gene-6. TSG-6 is up-regulated in inflammatory lesions and in the ovary during ovulation. It has a strong anti-inflammatory and chondroprotective effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. Also included in this group are the stabilins: stabilin-1 (FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2 functions as the major liver and lymph node-scavenging receptor for HA and related glycosaminoglycans. Stabilin-2 is a scavenger receptor with a broad range of ligands including advanced glycation end (AGE) products, acetylated low density lipoprotein and procollagen peptides. In contrast, stabilin-1 does not bind HA, but binds acetylated low density lipoprotein and AGEs with lower affinity. As AGEs accum
Probab=25.26 E-value=90 Score=24.04 Aligned_cols=31 Identities=13% Similarity=0.002 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHhhcccchhhHHHHHHHHHhh
Q 026539 181 LLQLGVAIEALKDQTTVGYAVFQSVYHYWKEK 212 (237)
Q Consensus 181 ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~K 212 (237)
-++|+||+.++.+. ....+....+|.=|+.-
T Consensus 13 ~l~f~eA~~aC~~~-ga~lAs~~QL~~Aw~~G 43 (93)
T cd03515 13 KLTYTEAKAACEAE-GAHLATYSQLSAAQQLG 43 (93)
T ss_pred ccCHHHHHHHHHHc-CCccCCHHHHHHHHHcC
Confidence 58999999999988 34466677999999864
No 18
>COG5388 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.68 E-value=52 Score=28.87 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhcCCCc
Q 026539 203 QSVYHYWKEKVWFKIL 218 (237)
Q Consensus 203 ~~VY~yWk~KR~g~pL 218 (237)
..||.||...|.|+++
T Consensus 27 i~iF~YW~~lrggr~~ 42 (209)
T COG5388 27 ITIFHYWNRLRGGRAL 42 (209)
T ss_pred cHHHHHHHHhcCCCCC
Confidence 3899999999977665
No 19
>cd03517 Link_domain_CSPGs_modules_1_3 Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. In addition, aggrecan contains a second globular domain (G2) which contains link modules 3 and 4. G2 appears to lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues.
Probab=24.43 E-value=83 Score=24.30 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHHhhcccchhhHHHHHHHHHhh
Q 026539 181 LLQLGVAIEALKDQTTVGYAVFQSVYHYWKEK 212 (237)
Q Consensus 181 ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~K 212 (237)
.|+|.||+.++.+. ....+....+|.-|+.-
T Consensus 13 ~l~f~eA~~aC~~~-ga~lAs~~QL~~Aw~~G 43 (95)
T cd03517 13 ALTFPRAQRACLDI-SAQIATPEQLLAAYEDG 43 (95)
T ss_pred eECHHHHHHHHHHc-CCEeCCHHHHHHHHHcC
Confidence 68999999999988 34466777999999865
No 20
>PF04217 DUF412: Protein of unknown function, DUF412; InterPro: IPR007334 This family consists of bacterial uncharacterised proteins.
Probab=24.17 E-value=42 Score=27.88 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHhhhcCCCcccchhhhhhhhc
Q 026539 208 YWKEKVWFKILNVSLNLMYQFIN 230 (237)
Q Consensus 208 yWk~KR~g~pL~p~Lk~~~~~~~ 230 (237)
||..||.+.||-|+|..=|+++.
T Consensus 81 ~WLGkRa~tpLPp~l~~Wy~ei~ 103 (143)
T PF04217_consen 81 YWLGKRANTPLPPSLLSWYHEIR 103 (143)
T ss_pred HHhhcccCCCCCHHHHHHHHHHH
Confidence 99999999999999988887764
No 21
>smart00445 LINK Link (Hyaluronan-binding).
Probab=24.12 E-value=89 Score=24.07 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=25.8
Q ss_pred ccCCHHHHHHHHHhhcccchhhHHHHHHHHHhh
Q 026539 180 ILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEK 212 (237)
Q Consensus 180 ~ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~K 212 (237)
--|+|+||.+++... ....+....+|.=|+.-
T Consensus 13 y~l~f~eA~~aC~~~-ga~lAs~~QL~~Aw~~G 44 (94)
T smart00445 13 YKLTFAEAREACRAQ-GATLATVGQLYAAWQDG 44 (94)
T ss_pred CccCHHHHHHHHHHc-CCEeCCHHHHHHHHHhc
Confidence 468999999999988 34566677999999865
No 22
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=23.91 E-value=1.9e+02 Score=22.41 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=37.8
Q ss_pred CCChhhHHHHHHHhcCCCCCCHHHHHHHHHHHhhccHHhhhhhcCCCCCCCCCCCccCCHHHHHHHHHh
Q 026539 125 DLDNEDEDWLDEFNRDQKLLPPEKFETLMFKLEVLDHKARERAGLITPTLGSPIPILLQLGVAIEALKD 193 (237)
Q Consensus 125 DMDeeDe~wL~~~N~~r~~lsed~FE~imd~lEk~~~~~~~~~g~~~P~~~~d~~~ils~~ea~~~l~~ 193 (237)
.++.+|...++.+ ..||.+++=.-|-.|+...|. |.++||+++-++
T Consensus 43 ~l~~dD~~~~~eL----s~Lt~~~L~~~Ik~L~~~aYq-------------------LGl~EaKEmtRG 88 (95)
T PF10044_consen 43 ELTKDDMEKMNEL----SSLTPDQLIEKIKKLQDEAYQ-------------------LGLEEAKEMTRG 88 (95)
T ss_pred ccCHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHH-------------------HhHHHHHHHHhh
Confidence 5778888877776 689999999999999998873 568999887664
No 23
>cd03519 Link_domain_HAPLN_module_2 Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.
Probab=23.64 E-value=1.1e+02 Score=23.47 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=25.2
Q ss_pred CccCCHHHHHHHHHhhcccchhhHHHHHHHHH
Q 026539 179 PILLQLGVAIEALKDQTTVGYAVFQSVYHYWK 210 (237)
Q Consensus 179 ~~ils~~ea~~~l~~~~~~~~~~~~~VY~yWk 210 (237)
+.-|+|+||..++.+. ....+....+|.=|+
T Consensus 8 ~~~l~f~eA~~aC~~~-ga~lAs~~QL~aAw~ 38 (91)
T cd03519 8 PGKLTFSEAVAACQRD-GAQIAKVGQLFAAWK 38 (91)
T ss_pred ccccCHHHHHHHHHHc-CCEeCCHHHHHHHHH
Confidence 3469999999999987 344666779999998
No 24
>cd03520 Link_domain_CSPGs_modules_2_4 Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. Aggrecan in addition contains a second globular domain (G2) having link modules 3 and 4 which lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and
Probab=22.18 E-value=1.2e+02 Score=23.43 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=25.8
Q ss_pred ccCCHHHHHHHHHhhcccchhhHHHHHHHHHhh
Q 026539 180 ILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEK 212 (237)
Q Consensus 180 ~ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~K 212 (237)
.-++|+||..++.+. +...+....+|.=|+.-
T Consensus 9 ~~l~f~eA~~aC~~~-ga~lAs~~QL~~Aw~~G 40 (96)
T cd03520 9 EKFTFQEARAECRSL-GAVLATTGQLYAAWRQG 40 (96)
T ss_pred CCcCHHHHHHHHHHc-CCEeCCHHHHHHHHHhc
Confidence 469999999999988 34456677999999865
No 25
>cd03518 Link_domain_HAPLN_module_1 Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.
Probab=21.87 E-value=1.1e+02 Score=23.70 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHhhcccchhhHHHHHHHHHhh
Q 026539 181 LLQLGVAIEALKDQTTVGYAVFQSVYHYWKEK 212 (237)
Q Consensus 181 ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~K 212 (237)
-|+|.||.+++.+. +...+....+|.=|+.-
T Consensus 13 ~l~f~eA~~aC~~~-ga~lAs~~QL~~Aw~~G 43 (95)
T cd03518 13 NLNFHEAQQACEEQ-DATLASFEQLYQAWTEG 43 (95)
T ss_pred ccCHHHHHHHHHHc-CCeeCCHHHHHHHHHcC
Confidence 58999999999988 44566777999999855
No 26
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=21.69 E-value=2.4e+02 Score=18.35 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHhhccHHhhhhhcCCCCCCCCCCCccCCHHHHHHHHHhhcccchhhHHHHHHHHHhhh
Q 026539 141 QKLLPPEKFETLMFKLEVLDHKARERAGLITPTLGSPIPILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKV 213 (237)
Q Consensus 141 r~~lsed~FE~imd~lEk~~~~~~~~~g~~~P~~~~d~~~ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~KR 213 (237)
+..+|.++...|...|+.. | -++.++...+...++ .-...|..+..+||
T Consensus 4 r~~~t~~q~~~L~~~f~~~------------~--------~p~~~~~~~la~~l~----l~~~~V~~WF~nrR 52 (57)
T PF00046_consen 4 RTRFTKEQLKVLEEYFQEN------------P--------YPSKEEREELAKELG----LTERQVKNWFQNRR 52 (57)
T ss_dssp SSSSSHHHHHHHHHHHHHS------------S--------SCHHHHHHHHHHHHT----SSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh------------c--------ccccccccccccccc----ccccccccCHHHhH
Confidence 4578999999999999862 2 356677666666552 22347777777776
No 27
>PRK01816 hypothetical protein; Provisional
Probab=20.51 E-value=53 Score=27.29 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.2
Q ss_pred HHHhhhcCCCcccchhhhhhhhcc
Q 026539 208 YWKEKVWFKILNVSLNLMYQFINI 231 (237)
Q Consensus 208 yWk~KR~g~pL~p~Lk~~~~~~~~ 231 (237)
||..||.+.||=|+|--=|+++..
T Consensus 80 ~WLGkRa~tpLPpsL~~Wy~el~~ 103 (143)
T PRK01816 80 WWLGKRSVTPLPPALLNWFYEVRE 103 (143)
T ss_pred HHhccccCCCCChHHHHHHHHHHH
Confidence 999999999999999888877654
No 28
>cd01102 Link_Domain The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor necrosis factor-stimulated gene-6. TSG-6 has a strong anti-inflammatory effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. This group also contains the link domains of the chondroitin sulfate proteoglycan core proteins (CSPG) including aggrecan, versican, neurocan, and brevican and the link domains of the vertebrate HAPLN (HA and proteoglycan binding link) protein family. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates in which other CSPGs substitute for aggregan might contribute to the structural integrity of many different tissues. Members of
Probab=20.37 E-value=1.2e+02 Score=23.28 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=26.2
Q ss_pred CccCCHHHHHHHHHhhcccchhhHHHHHHHHHhh
Q 026539 179 PILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEK 212 (237)
Q Consensus 179 ~~ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~K 212 (237)
..-|+|+||...+.+. .........+|.=|+.-
T Consensus 11 ~y~l~f~eA~~aC~~~-ga~lAs~~QL~~Aw~~G 43 (92)
T cd01102 11 RYKLTFAEAALACKAR-GAHLATPGQLEAAWQDG 43 (92)
T ss_pred CcccCHHHHHHHHHHc-CCEeCCHHHHHHHHHcc
Confidence 3478999999999988 34456677999999865
No 29
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.02 E-value=79 Score=27.25 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=30.6
Q ss_pred HHHHHHHHhhccHHhhhhhcCCCCCCCCCCCccCCHHHHHHH------HHhhcccchhhHHHHHHHHHhhhc
Q 026539 149 FETLMFKLEVLDHKARERAGLITPTLGSPIPILLQLGVAIEA------LKDQTTVGYAVFQSVYHYWKEKVW 214 (237)
Q Consensus 149 FE~imd~lEk~~~~~~~~~g~~~P~~~~d~~~ils~~ea~~~------l~~~~~~~~~~~~~VY~yWk~KR~ 214 (237)
|-..+-+||..+. +...|...|. .|.+++|+..+ |.+.---....-.-||+||+.+|+
T Consensus 33 ~Aq~~hr~~~r~k--mr~lg~g~~v------~i~PLnEa~Ave~gadlLgE~~iF~vggg~lv~Ey~R~~~~ 96 (181)
T KOG3335|consen 33 PAQLYHRFTVRLK--MRALGLGGPV------VIRPLNEAAAVEAGADLLGELFIFSVGGGVLVFEYWRQARK 96 (181)
T ss_pred HHHhhHHHHHHHH--HHHhcCCCCc------ccCCCCHHHHHHHHHHHHhhHHheeecceeeeehhHHhhhc
Confidence 5566777776553 3345554553 35555554332 332210011122378999999984
Done!