Query 026539
Match_columns 237
No_of_seqs 186 out of 335
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lv4_A Catestatin, chromograni 90.6 0.12 4.2E-06 29.5 1.7 19 3-21 4-22 (26)
2 4b19_A PEPA1; toxin, toxin apo 77.6 1.5 5.3E-05 26.0 2.3 15 201-215 15-29 (30)
3 3dve_B Voltage-dependent N-typ 46.7 9.4 0.00032 21.3 1.5 12 204-215 10-21 (23)
4 3dvk_B Voltage-dependent R-typ 44.4 10 0.00034 21.1 1.4 11 204-214 11-21 (23)
5 1b0n_B Protein (SINI protein); 36.4 12 0.00041 25.3 1.0 35 126-160 8-43 (57)
6 2f8e_A VPG protein; RNA-depend 28.4 16 0.00053 20.7 0.4 16 7-22 9-24 (26)
7 1ojh_A NBLA; degradation prote 26.8 60 0.0021 22.4 3.3 33 181-215 24-57 (65)
8 3bxl_B CAM, voltage-dependent 24.3 30 0.001 19.7 1.1 10 204-213 7-16 (26)
9 2kt9_A Probable 30S ribosomal 20.6 1.4E+02 0.0049 22.7 4.7 40 147-214 46-85 (116)
10 1waz_A MERF; protein structure 20.4 50 0.0017 21.3 1.7 10 204-213 35-44 (46)
No 1
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=90.64 E-value=0.12 Score=29.46 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.3
Q ss_pred CCccCCCCCCCCCCcceec
Q 026539 3 RLSIRPRPLDIHKKLPIVK 21 (237)
Q Consensus 3 k~sfR~R~ld~~k~L~I~~ 21 (237)
|+|||+|+-|...|.+-.+
T Consensus 4 KlsFRar~Y~Fr~Pg~~~r 22 (26)
T 1lv4_A 4 KLSFRARAYGFRGPGPQLX 22 (26)
T ss_dssp CSCSCCCSSSSCSSCTTC-
T ss_pred eEeeeeeecccCCCccccc
Confidence 8999999999999988654
No 2
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=77.60 E-value=1.5 Score=26.01 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=12.2
Q ss_pred hHHHHHHHHHhhhcC
Q 026539 201 VFQSVYHYWKEKVWF 215 (237)
Q Consensus 201 ~~~~VY~yWk~KR~g 215 (237)
.+-+.|.||+++|.+
T Consensus 15 civalF~hWL~~r~~ 29 (30)
T 4b19_A 15 CAIAFFSYWLSRRNT 29 (30)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhccC
Confidence 445999999999964
No 3
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=46.66 E-value=9.4 Score=21.25 Aligned_cols=12 Identities=8% Similarity=0.393 Sum_probs=9.9
Q ss_pred HHHHHHHhhhcC
Q 026539 204 SVYHYWKEKVWF 215 (237)
Q Consensus 204 ~VY~yWk~KR~g 215 (237)
-|++||++.|.+
T Consensus 10 lI~d~~r~~k~~ 21 (23)
T 3dve_B 10 MIFDFYKQNKTS 21 (26)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhhc
Confidence 789999988754
No 4
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=44.37 E-value=10 Score=21.14 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=9.2
Q ss_pred HHHHHHHhhhc
Q 026539 204 SVYHYWKEKVW 214 (237)
Q Consensus 204 ~VY~yWk~KR~ 214 (237)
-|++||+..|.
T Consensus 11 lI~d~~r~~k~ 21 (23)
T 3dvk_B 11 MIMDYYKQSKV 21 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 78999998864
No 5
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=36.42 E-value=12 Score=25.27 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=24.7
Q ss_pred CChhhHHHHHHHhc-CCCCCCHHHHHHHHHHHhhcc
Q 026539 126 LDNEDEDWLDEFNR-DQKLLPPEKFETLMFKLEVLD 160 (237)
Q Consensus 126 MDeeDe~wL~~~N~-~r~~lsed~FE~imd~lEk~~ 160 (237)
+.+-|.+||.-+.. ++-.+|-+++..++....+.+
T Consensus 8 ~~~~d~ewl~LI~~Ak~lGlsleEIrefL~l~~~~~ 43 (57)
T 1b0n_B 8 HFELDQEWVELMVEAKEANISPEEIRKYLLLNKKSA 43 (57)
T ss_dssp -CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHC----
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCC
Confidence 56789999998865 345899999999997776644
No 6
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=28.38 E-value=16 Score=20.65 Aligned_cols=16 Identities=44% Similarity=0.821 Sum_probs=13.5
Q ss_pred CCCCCCCCCCcceecc
Q 026539 7 RPRPLDIHKKLPIVKS 22 (237)
Q Consensus 7 R~R~ld~~k~L~I~~~ 22 (237)
|+++|-++.+||+.+.
T Consensus 9 rq~plkvkak~p~~~~ 24 (26)
T 2f8e_A 9 RQRPLKVKAKLPQAEX 24 (26)
T ss_pred hcCcceeeeccccccc
Confidence 8899999999998653
No 7
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=26.84 E-value=60 Score=22.43 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=25.7
Q ss_pred cCCHHHHHHHHHhhcccchhhHH-HHHHHHHhhhcC
Q 026539 181 LLQLGVAIEALKDQTTVGYAVFQ-SVYHYWKEKVWF 215 (237)
Q Consensus 181 ils~~ea~~~l~~~~~~~~~~~~-~VY~yWk~KR~g 215 (237)
-+|.++|.++|-+. -+...+. .+|.||.+.-||
T Consensus 24 ~ls~EQaqe~Lve~--~rQmMikeN~~k~liK~~w~ 57 (65)
T 1ojh_A 24 NMSHDQAKDFLVKL--YEQMVVREATYQELLKHQWG 57 (65)
T ss_dssp TCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTC-
T ss_pred HhCHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC
Confidence 47899999999876 2345666 999999998876
No 8
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=24.30 E-value=30 Score=19.72 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=8.1
Q ss_pred HHHHHHHhhh
Q 026539 204 SVYHYWKEKV 213 (237)
Q Consensus 204 ~VY~yWk~KR 213 (237)
-||+||+.-+
T Consensus 7 mI~e~yrq~K 16 (26)
T 3bxl_B 7 MIMDYYKQSK 16 (26)
T ss_pred HHHHHHHHHH
Confidence 7999998764
No 9
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=20.57 E-value=1.4e+02 Score=22.73 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhccHHhhhhhcCCCCCCCCCCCccCCHHHHHHHHHhhcccchhhHHHHHHHHHhhhc
Q 026539 147 EKFETLMFKLEVLDHKARERAGLITPTLGSPIPILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKVW 214 (237)
Q Consensus 147 d~FE~imd~lEk~~~~~~~~~g~~~P~~~~d~~~ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~KR~ 214 (237)
|-.|.+=..||.. | -++..+...+|... .+|-+||..||.
T Consensus 46 DAWe~LK~eLEsK------------~--------WIse~e~i~lLN~~--------TeiIN~WQe~~~ 85 (116)
T 2kt9_A 46 DAWQQLKDELEAK------------H--------WIAEADRINVLNQA--------TEVINFWQDLKN 85 (116)
T ss_dssp CHHHHHHHHHHHS------------T--------TSCHHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcC------------C--------CCCHHHHHHHHHHH--------HHHHHHHHhhhh
Confidence 5577777777752 2 45666666666643 389999999763
No 10
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=20.36 E-value=50 Score=21.26 Aligned_cols=10 Identities=10% Similarity=0.444 Sum_probs=9.1
Q ss_pred HHHHHHHhhh
Q 026539 204 SVYHYWKEKV 213 (237)
Q Consensus 204 ~VY~yWk~KR 213 (237)
.+|..|+++|
T Consensus 35 t~ya~~r~~~ 44 (46)
T 1waz_A 35 TIYAIQRKRQ 44 (46)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 9999999886
Done!