Query 026539
Match_columns 237
No_of_seqs 186 out of 335
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 15:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026539.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026539hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z7aa1 c.6.2.6 (A:4-304) Hypo 35.9 6.5 0.00047 32.5 1.7 87 122-212 206-297 (301)
2 d1f00i3 d.169.1.3 (I:842-939) 21.1 41 0.003 23.3 3.5 31 181-211 9-42 (98)
3 d2pf5a1 d.169.1.4 (A:1-95) TSG 21.0 33 0.0024 23.5 3.0 31 181-212 13-43 (95)
4 d1lr1a_ a.155.1.1 (A:) H1 prot 18.1 23 0.0017 22.3 1.4 32 132-163 2-39 (57)
5 d1um8a_ c.37.1.20 (A:) ClpX {H 17.0 58 0.0042 27.0 4.3 33 181-213 5-41 (364)
6 d1g41a_ c.37.1.20 (A:) HslU {H 15.0 38 0.0028 29.1 2.5 24 181-214 16-39 (443)
7 d1vp7a_ a.7.13.1 (A:) Exonucle 13.6 1.1E+02 0.0077 19.4 4.0 32 148-193 7-38 (68)
8 d1uuha_ d.169.1.4 (A:) CD44, h 13.5 54 0.0039 24.3 2.7 31 181-212 24-54 (150)
9 d1gvna_ a.8.2.1 (A:) Plasmid m 13.4 38 0.0028 22.8 1.6 13 200-212 62-74 (88)
10 d2c4fl3 g.32.1.1 (L:5-44) Coag 10.5 80 0.0058 18.2 2.2 15 180-194 16-30 (40)
No 1
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.87 E-value=6.5 Score=32.48 Aligned_cols=87 Identities=18% Similarity=0.243 Sum_probs=53.2
Q ss_pred cccCCChhhHHHHHHHhcCCCCCCHHHH-HHHHHHHhhccHHhhhhhcCC----CCCCCCCCCccCCHHHHHHHHHhhcc
Q 026539 122 VEYDLDNEDEDWLDEFNRDQKLLPPEKF-ETLMFKLEVLDHKARERAGLI----TPTLGSPIPILLQLGVAIEALKDQTT 196 (237)
Q Consensus 122 ~eYDMDeeDe~wL~~~N~~r~~lsed~F-E~imd~lEk~~~~~~~~~g~~----~P~~~~d~~~ils~~ea~~~l~~~~~ 196 (237)
+.|.++..|-.+..- ....+.+.| +.+.|.|.....+.....+.. -|++.--+..+--++++.+.++..+.
T Consensus 206 iP~~~~~~D~~~~~~----~~~~~~~~~~~~~~d~fd~l~~e~~~~~~~~~l~lHP~i~G~P~Ri~~Le~~l~~i~~~~d 281 (301)
T d1z7aa1 206 IPYTLDTNDMRFTQV----QGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLHCRLIGRPARMAALERFIQYAQSHDK 281 (301)
T ss_dssp CCCCSSSBGGGGGST----TCCSSHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEETTTTTSHHHHHHHHHHHHHHHTSSS
T ss_pred eccccccchhhhhhc----CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeeCCcccCCHHHHHHHHHHHHHHHcCCC
Confidence 567777777544321 235566666 677777876554432111111 47776555566667888777776543
Q ss_pred cchhhHHHHHHHHHhh
Q 026539 197 VGYAVFQSVYHYWKEK 212 (237)
Q Consensus 197 ~~~~~~~~VY~yWk~K 212 (237)
+=.....+|.+||+++
T Consensus 282 VW~at~~eIA~~~~~~ 297 (301)
T d1z7aa1 282 VWFARREDIARHWHRE 297 (301)
T ss_dssp EEECCHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHH
Confidence 3345667999999986
No 2
>d1f00i3 d.169.1.3 (I:842-939) Intimin {Escherichia coli [TaxId: 562]}
Probab=21.11 E-value=41 Score=23.28 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHhhc---ccchhhHHHHHHHHHh
Q 026539 181 LLQLGVAIEALKDQT---TVGYAVFQSVYHYWKE 211 (237)
Q Consensus 181 ils~~ea~~~l~~~~---~~~~~~~~~VY~yWk~ 211 (237)
-++|++|...|+.+. +.....+..||+-|=.
T Consensus 9 rv~Y~~A~~~C~~~~g~LpsSq~eL~~vy~~WGa 42 (98)
T d1f00i3 9 RVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGA 42 (98)
T ss_dssp EECHHHHHHHHHHTTCBCCSSHHHHHHHHHHHCC
T ss_pred eeEHHHHHHHHHhcCCCCCccHHHHHHHHhcccc
Confidence 468999999998752 3345688999999954
No 3
>d2pf5a1 d.169.1.4 (A:1-95) TSG-6, Link module {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.03 E-value=33 Score=23.45 Aligned_cols=31 Identities=13% Similarity=-0.050 Sum_probs=25.9
Q ss_pred cCCHHHHHHHHHhhcccchhhHHHHHHHHHhh
Q 026539 181 LLQLGVAIEALKDQTTVGYAVFQSVYHYWKEK 212 (237)
Q Consensus 181 ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~K 212 (237)
-++|+||..++... ..+.+...+|++=|+.-
T Consensus 13 ~l~f~eA~~~C~~~-ga~LAt~~QL~~A~~~G 43 (95)
T d2pf5a1 13 KLTYAEAKAVCEFE-GGHLATYKQLEAARKIG 43 (95)
T ss_dssp CBCHHHHHHHHHHT-TCEECCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHc-CCccCCHHHHHHHHHcC
Confidence 58999999999988 45667778999998865
No 4
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=18.12 E-value=23 Score=22.30 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=24.5
Q ss_pred HHHHHHhcC------CCCCCHHHHHHHHHHHhhccHHh
Q 026539 132 DWLDEFNRD------QKLLPPEKFETLMFKLEVLDHKA 163 (237)
Q Consensus 132 ~wL~~~N~~------r~~lsed~FE~imd~lEk~~~~~ 163 (237)
++|+.+|+- ...+|-+++|.|..+|.....+.
T Consensus 2 e~LK~L~NIRsLRA~aRE~slE~LEe~lEKl~~Vv~Er 39 (57)
T d1lr1a_ 2 EALKILNNIRTLRAQARESTLETLEEMLEKLEVVVNER 39 (57)
T ss_dssp HHHHHTTHHHHHHHHTTTSCTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 467777653 35899999999999998776655
No 5
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=17.05 E-value=58 Score=26.97 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=21.3
Q ss_pred cCCHHHHHHHHHhhcccch---hhHH-HHHHHHHhhh
Q 026539 181 LLQLGVAIEALKDQTTVGY---AVFQ-SVYHYWKEKV 213 (237)
Q Consensus 181 ils~~ea~~~l~~~~~~~~---~~~~-~VY~yWk~KR 213 (237)
++|..+....|.+.--+.. ..++ +||+||++.|
T Consensus 5 ~~tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~ 41 (364)
T d1um8a_ 5 IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLS 41 (364)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCeecChHHHHHHHHHHHHHHHHHHH
Confidence 4577777777776422222 2455 9999999753
No 6
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=15.02 E-value=38 Score=29.08 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=15.8
Q ss_pred cCCHHHHHHHHHhhcccchhhHHHHHHHHHhhhc
Q 026539 181 LLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKVW 214 (237)
Q Consensus 181 ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~KR~ 214 (237)
|+--++|+..+.- +||+||++.+.
T Consensus 16 VvGQ~~AKk~lsv----------av~nhyrR~~~ 39 (443)
T d1g41a_ 16 IIGQADAKRAVAI----------ALRNRWRRMQL 39 (443)
T ss_dssp CCSCHHHHHHHHH----------HHHHHHHHHHS
T ss_pred ccCcHHHHHHHHH----------HHHHHHHHhhc
Confidence 3445666554441 99999987763
No 7
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=13.56 E-value=1.1e+02 Score=19.36 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhccHHhhhhhcCCCCCCCCCCCccCCHHHHHHHHHh
Q 026539 148 KFETLMFKLEVLDHKARERAGLITPTLGSPIPILLQLGVAIEALKD 193 (237)
Q Consensus 148 ~FE~imd~lEk~~~~~~~~~g~~~P~~~~d~~~ils~~ea~~~l~~ 193 (237)
.||..|++||.....- + +.-++++++...+..
T Consensus 7 sfEe~l~~LE~IV~~L-E-------------~g~l~Leesl~~ye~ 38 (68)
T d1vp7a_ 7 DFETALAELESLVSAM-E-------------NGTLPLEQSLSAYRR 38 (68)
T ss_dssp SHHHHHHHHHHHHHHH-H-------------TTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-h-------------CCCCCHHHHHHHHHH
Confidence 5888888888765432 1 124689998887765
No 8
>d1uuha_ d.169.1.4 (A:) CD44, hyaluronan binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.46 E-value=54 Score=24.27 Aligned_cols=31 Identities=6% Similarity=-0.096 Sum_probs=26.3
Q ss_pred cCCHHHHHHHHHhhcccchhhHHHHHHHHHhh
Q 026539 181 LLQLGVAIEALKDQTTVGYAVFQSVYHYWKEK 212 (237)
Q Consensus 181 ils~~ea~~~l~~~~~~~~~~~~~VY~yWk~K 212 (237)
.++|++|..++... ..+.+...+++.-|+.-
T Consensus 24 ~~tf~eA~~~C~~~-ga~LAt~~ql~~A~~~G 54 (150)
T d1uuha_ 24 SISRTEAADLCKAF-NSTLPTMAQMEKALSIG 54 (150)
T ss_dssp CBCHHHHHHHHHHT-TCBCCCHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHc-CCccCCHHHHHHHHhcC
Confidence 68999999999998 45677788999999875
No 9
>d1gvna_ a.8.2.1 (A:) Plasmid maintenance system epsilon/zeta, antidote epsilon subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=13.45 E-value=38 Score=22.76 Aligned_cols=13 Identities=31% Similarity=0.744 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHhh
Q 026539 200 AVFQSVYHYWKEK 212 (237)
Q Consensus 200 ~~~~~VY~yWk~K 212 (237)
.-+.+|++||++=
T Consensus 62 eELeaiheYwrsm 74 (88)
T d1gvna_ 62 EELQAVHEYWRSM 74 (88)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567999999975
No 10
>d2c4fl3 g.32.1.1 (L:5-44) Coagulation factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=10.51 E-value=80 Score=18.22 Aligned_cols=15 Identities=27% Similarity=0.140 Sum_probs=12.5
Q ss_pred ccCCHHHHHHHHHhh
Q 026539 180 ILLQLGVAIEALKDQ 194 (237)
Q Consensus 180 ~ils~~ea~~~l~~~ 194 (237)
.+.+++||.+++...
T Consensus 16 E~Cs~EEArEiFe~~ 30 (40)
T d2c4fl3 16 EQCSFEEAREIFKDA 30 (40)
T ss_dssp SCCCHHHHHHHHCSH
T ss_pred hcCCHHHHHHHHcCc
Confidence 378999999999864
Done!