Query 026541
Match_columns 237
No_of_seqs 137 out of 1314
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 16:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.7 5.4E-18 1.9E-22 118.3 6.5 88 36-124 3-92 (94)
2 1wd2_A Ariadne-1 protein homol 99.5 3.5E-15 1.2E-19 94.3 0.5 39 196-234 4-47 (60)
3 2ct7_A Ring finger protein 31; 99.4 7.2E-15 2.5E-19 100.4 -3.8 75 106-186 3-81 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.3 2E-14 6.7E-19 96.7 -3.2 70 104-178 2-76 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.1 1.1E-11 3.9E-16 91.2 -0.8 119 36-211 5-126 (133)
6 3hcs_A TNF receptor-associated 99.0 1.1E-10 3.7E-15 89.8 3.4 133 35-212 15-151 (170)
7 2ct2_A Tripartite motif protei 98.8 5.3E-09 1.8E-13 71.2 4.2 64 34-104 11-74 (88)
8 1rmd_A RAG1; V(D)J recombinati 98.7 1.3E-08 4.4E-13 73.1 5.5 83 38-144 23-105 (116)
9 2ecm_A Ring finger and CHY zin 98.7 1.3E-08 4.5E-13 62.9 4.3 52 36-97 3-54 (55)
10 2egp_A Tripartite motif-contai 98.7 3.5E-09 1.2E-13 70.6 1.3 61 35-102 9-69 (79)
11 1jm7_A BRCA1, breast cancer ty 98.7 3.3E-08 1.1E-12 70.4 5.8 71 38-119 21-92 (112)
12 3hct_A TNF receptor-associated 98.7 2.9E-08 1E-12 71.5 5.5 85 35-144 15-99 (118)
13 2ysl_A Tripartite motif-contai 98.7 7.7E-09 2.6E-13 67.9 2.1 56 35-101 17-72 (73)
14 2ecv_A Tripartite motif-contai 98.7 1.9E-08 6.5E-13 67.8 4.1 60 35-102 16-75 (85)
15 1g25_A CDK-activating kinase a 98.6 6.5E-09 2.2E-13 66.7 1.6 59 38-105 3-62 (65)
16 2ecw_A Tripartite motif-contai 98.6 3.2E-08 1.1E-12 66.6 4.6 60 35-102 16-75 (85)
17 2ecy_A TNF receptor-associated 98.6 2.1E-08 7.3E-13 64.5 3.5 53 35-100 12-64 (66)
18 2djb_A Polycomb group ring fin 98.6 2.1E-08 7.1E-13 65.7 3.1 58 35-105 12-69 (72)
19 3knv_A TNF receptor-associated 98.6 3.4E-09 1.2E-13 78.9 -1.8 93 35-144 28-121 (141)
20 1t1h_A Gspef-atpub14, armadill 98.6 4.7E-08 1.6E-12 64.9 4.0 67 35-114 5-72 (78)
21 1e4u_A Transcriptional repress 98.6 3.6E-08 1.2E-12 65.6 3.4 58 35-101 8-65 (78)
22 3ng2_A RNF4, snurf, ring finge 98.5 2.4E-08 8.2E-13 65.1 2.0 59 35-103 7-68 (71)
23 3ztg_A E3 ubiquitin-protein li 98.5 3E-08 1E-12 68.1 2.5 51 34-96 9-60 (92)
24 2xeu_A Ring finger protein 4; 98.5 3E-08 1E-12 63.1 2.0 58 37-104 2-62 (64)
25 3lrq_A E3 ubiquitin-protein li 98.5 1.6E-07 5.5E-12 65.5 5.8 56 36-104 20-76 (100)
26 2ysj_A Tripartite motif-contai 98.5 9E-08 3.1E-12 60.8 4.1 46 35-89 17-62 (63)
27 2d8t_A Dactylidin, ring finger 98.5 4E-08 1.4E-12 64.1 2.4 55 35-103 12-66 (71)
28 2kiz_A E3 ubiquitin-protein li 98.5 1.3E-07 4.4E-12 61.2 4.8 53 35-98 11-63 (69)
29 1iym_A EL5; ring-H2 finger, ub 98.5 1E-07 3.4E-12 58.8 3.3 51 36-97 3-54 (55)
30 2ect_A Ring finger protein 126 98.5 5.7E-08 1.9E-12 64.5 2.1 58 35-103 12-69 (78)
31 2ep4_A Ring finger protein 24; 98.4 1.5E-07 5.2E-12 61.8 3.7 53 34-97 11-63 (74)
32 2csy_A Zinc finger protein 183 98.4 1.9E-07 6.5E-12 62.5 4.2 49 35-97 12-60 (81)
33 2ea6_A Ring finger protein 4; 98.4 1.2E-07 4.1E-12 61.2 2.9 53 35-97 12-67 (69)
34 2yur_A Retinoblastoma-binding 98.4 1.5E-07 5.1E-12 61.9 3.3 51 34-96 11-62 (74)
35 2ecj_A Tripartite motif-contai 98.4 2.5E-07 8.6E-12 57.6 3.7 46 35-89 12-57 (58)
36 2y43_A E3 ubiquitin-protein li 98.4 2.6E-07 8.9E-12 64.3 3.8 67 37-116 21-88 (99)
37 1x4j_A Ring finger protein 38; 98.4 1.4E-07 4.8E-12 62.1 2.2 53 35-98 20-72 (75)
38 4ayc_A E3 ubiquitin-protein li 98.3 7.3E-07 2.5E-11 65.9 5.8 46 38-97 53-98 (138)
39 2l0b_A E3 ubiquitin-protein li 98.3 1.1E-07 3.8E-12 65.2 1.2 53 35-98 37-89 (91)
40 3fl2_A E3 ubiquitin-protein li 98.3 2.3E-07 7.8E-12 67.3 2.6 50 36-98 50-99 (124)
41 1bor_A Transcription factor PM 98.3 1.5E-07 5.2E-12 58.4 1.3 47 35-98 3-49 (56)
42 1v87_A Deltex protein 2; ring- 98.3 6E-07 2E-11 64.0 4.5 57 36-97 23-93 (114)
43 2yu4_A E3 SUMO-protein ligase 98.3 8.1E-07 2.8E-11 61.2 4.3 60 36-101 5-66 (94)
44 2kr4_A Ubiquitin conjugation f 98.2 2.6E-06 8.9E-11 57.5 5.9 52 35-100 11-62 (85)
45 1z6u_A NP95-like ring finger p 98.2 1.2E-06 4.2E-11 65.6 4.3 50 37-99 77-126 (150)
46 1jm7_B BARD1, BRCA1-associated 98.1 4E-07 1.4E-11 65.4 0.8 47 37-99 21-68 (117)
47 1chc_A Equine herpes virus-1 r 98.1 1.6E-06 5.3E-11 55.8 3.6 49 36-97 3-51 (68)
48 2ckl_A Polycomb group ring fin 98.1 7.1E-07 2.4E-11 63.1 2.1 50 36-98 13-62 (108)
49 3l11_A E3 ubiquitin-protein li 98.1 7.5E-07 2.6E-11 63.6 2.0 49 37-98 14-62 (115)
50 2ecn_A Ring finger protein 141 98.1 1.1E-07 3.8E-12 61.7 -2.6 50 34-98 11-60 (70)
51 2ecg_A Baculoviral IAP repeat- 98.1 6.4E-06 2.2E-10 54.1 5.6 43 38-98 25-68 (75)
52 2ecl_A Ring-box protein 2; RNF 98.0 8.1E-07 2.8E-11 59.4 0.5 55 36-100 13-78 (81)
53 3htk_C E3 SUMO-protein ligase 98.0 2.1E-06 7.1E-11 69.4 1.7 59 35-102 178-236 (267)
54 1wgm_A Ubiquitin conjugation f 98.0 7.6E-06 2.6E-10 56.7 4.3 52 35-100 19-71 (98)
55 2kre_A Ubiquitin conjugation f 97.9 5.3E-06 1.8E-10 57.7 3.4 51 35-99 26-76 (100)
56 2c2l_A CHIP, carboxy terminus 97.9 6.6E-06 2.3E-10 67.6 3.6 53 35-100 205-257 (281)
57 4ic3_A E3 ubiquitin-protein li 97.9 1.6E-06 5.4E-11 56.9 -0.4 42 38-97 24-66 (74)
58 2ckl_B Ubiquitin ligase protei 97.8 9E-06 3.1E-10 61.8 3.3 49 37-97 53-101 (165)
59 4ap4_A E3 ubiquitin ligase RNF 97.8 7.7E-06 2.6E-10 59.5 2.2 60 35-104 69-131 (133)
60 2f42_A STIP1 homology and U-bo 97.8 3.6E-05 1.2E-09 59.1 5.9 55 33-100 101-155 (179)
61 2d8s_A Cellular modulator of i 97.7 3.1E-05 1.1E-09 51.5 3.9 55 35-99 12-71 (80)
62 3dpl_R Ring-box protein 1; ubi 97.6 6.3E-05 2.1E-09 52.8 4.3 53 36-98 35-101 (106)
63 2y1n_A E3 ubiquitin-protein li 97.6 6E-05 2.1E-09 64.5 4.9 52 36-100 330-381 (389)
64 2ea5_A Cell growth regulator w 97.5 3.3E-05 1.1E-09 49.6 2.2 45 36-98 13-58 (68)
65 2yho_A E3 ubiquitin-protein li 97.5 8.4E-06 2.9E-10 54.2 -1.0 43 38-98 18-61 (79)
66 2vje_B MDM4 protein; proto-onc 97.5 4.3E-05 1.5E-09 48.3 2.1 50 36-97 5-55 (63)
67 2vje_A E3 ubiquitin-protein li 97.5 4.5E-05 1.6E-09 48.4 2.1 49 37-97 7-56 (64)
68 4a0k_B E3 ubiquitin-protein li 97.2 6E-05 2.1E-09 53.7 0.5 54 36-99 46-113 (117)
69 2ct0_A Non-SMC element 1 homol 97.2 0.00033 1.1E-08 45.6 3.8 52 35-97 12-63 (74)
70 3t6p_A Baculoviral IAP repeat- 96.8 0.00018 6.3E-09 60.9 -0.5 43 37-97 294-337 (345)
71 3k1l_B Fancl; UBC, ring, RWD, 96.6 0.0016 5.4E-08 54.6 4.1 64 35-100 305-375 (381)
72 1wd2_A Ariadne-1 protein homol 96.5 0.0015 5.1E-08 40.6 2.6 40 125-170 4-45 (60)
73 1vyx_A ORF K3, K3RING; zinc-bi 96.1 0.011 3.7E-07 36.7 5.0 50 36-97 4-58 (60)
74 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0084 2.9E-07 41.2 4.4 26 149-174 69-95 (101)
75 2bay_A PRE-mRNA splicing facto 95.7 0.008 2.7E-07 37.4 3.1 52 38-103 3-55 (61)
76 2ct7_A Ring finger protein 31; 95.6 0.0095 3.3E-07 39.8 3.5 38 196-233 23-61 (86)
77 2jmo_A Parkin; IBR, E3 ligase, 95.6 0.005 1.7E-07 40.6 1.8 40 196-235 23-70 (80)
78 3vk6_A E3 ubiquitin-protein li 94.7 0.024 8.1E-07 38.6 3.2 46 40-97 3-48 (101)
79 2cs3_A Protein C14ORF4, MY039 93.3 0.18 6E-06 32.7 5.0 51 35-89 12-63 (93)
80 3j20_Y 30S ribosomal protein S 91.0 0.18 6.2E-06 29.8 2.8 30 196-225 17-47 (50)
81 3nw0_A Non-structural maintena 89.3 0.37 1.3E-05 38.4 4.2 53 36-99 178-230 (238)
82 2k4x_A 30S ribosomal protein S 87.9 0.23 7.7E-06 30.0 1.6 29 197-225 17-46 (55)
83 1vq8_Z 50S ribosomal protein L 84.8 0.47 1.6E-05 31.2 2.0 31 196-226 25-56 (83)
84 1pft_A TFIIB, PFTFIIBN; N-term 84.2 0.64 2.2E-05 27.2 2.3 29 197-225 4-34 (50)
85 1weo_A Cellulose synthase, cat 83.8 0.92 3.1E-05 30.0 3.0 59 128-215 17-75 (93)
86 3qt1_I DNA-directed RNA polyme 83.2 0.77 2.6E-05 33.0 2.8 36 124-161 21-56 (133)
87 2jr6_A UPF0434 protein NMA0874 81.6 1.1 3.9E-05 28.1 2.8 29 197-225 7-36 (68)
88 3na7_A HP0958; flagellar bioge 76.5 8.3 0.00028 30.7 7.2 19 100-118 168-186 (256)
89 2hu9_A MERP, mercuric transpor 75.7 1.4 4.8E-05 31.5 2.1 47 85-143 2-51 (130)
90 2d8v_A Zinc finger FYVE domain 75.2 1.3 4.4E-05 27.5 1.5 35 35-74 5-40 (67)
91 1weo_A Cellulose synthase, cat 75.1 5.6 0.00019 26.2 4.7 53 36-97 14-69 (93)
92 2jne_A Hypothetical protein YF 73.7 2.7 9.2E-05 28.2 2.9 25 199-225 33-58 (101)
93 2yw8_A RUN and FYVE domain-con 72.0 2 6.9E-05 27.9 2.0 38 34-71 15-52 (82)
94 3h0g_I DNA-directed RNA polyme 71.8 2.6 8.9E-05 29.3 2.7 33 127-161 4-36 (113)
95 2ko5_A Ring finger protein Z; 71.2 0.99 3.4E-05 30.2 0.4 48 36-99 26-74 (99)
96 2jrp_A Putative cytoplasmic pr 70.1 3.2 0.00011 27.0 2.6 14 200-213 4-17 (81)
97 1z2q_A LM5-1; membrane protein 69.9 2.5 8.4E-05 27.6 2.1 37 35-71 18-54 (84)
98 1twf_I B12.6, DNA-directed RNA 67.7 2.9 9.8E-05 29.5 2.2 34 126-161 3-36 (122)
99 3h0g_I DNA-directed RNA polyme 67.4 4.2 0.00014 28.2 3.0 28 198-225 4-36 (113)
100 2hf1_A Tetraacyldisaccharide-1 67.3 4.7 0.00016 25.3 2.9 28 198-225 8-36 (68)
101 1wfh_A Zinc finger (AN1-like) 67.1 3.5 0.00012 25.5 2.2 33 196-232 13-45 (64)
102 2js4_A UPF0434 protein BB2007; 67.1 5.1 0.00017 25.2 3.1 29 197-225 7-36 (70)
103 3qt1_I DNA-directed RNA polyme 66.5 3.3 0.00011 29.7 2.3 32 194-225 20-56 (133)
104 1wfl_A Zinc finger protein 216 65.8 3.8 0.00013 26.1 2.2 32 197-232 24-55 (74)
105 1zbd_B Rabphilin-3A; G protein 65.4 5.5 0.00019 28.6 3.3 34 35-68 52-86 (134)
106 2pk7_A Uncharacterized protein 65.2 5.7 0.0002 24.9 3.0 28 198-225 8-36 (69)
107 1x4u_A Zinc finger, FYVE domai 64.2 3.3 0.00011 27.0 1.8 36 35-70 11-46 (84)
108 1twf_I B12.6, DNA-directed RNA 64.0 4.4 0.00015 28.5 2.6 30 197-226 3-37 (122)
109 1twf_L ABC10-alpha, DNA-direct 63.7 2.7 9.4E-05 26.5 1.3 24 199-223 29-53 (70)
110 3t7l_A Zinc finger FYVE domain 62.8 3.1 0.00011 27.6 1.5 37 36-72 18-54 (90)
111 1wg2_A Zinc finger (AN1-like) 61.7 4.7 0.00016 24.9 2.1 32 197-232 14-45 (64)
112 1joc_A EEA1, early endosomal a 61.6 3.2 0.00011 29.4 1.5 36 36-71 67-102 (125)
113 1fre_A Nuclear factor XNF7; zi 58.9 7.3 0.00025 21.3 2.5 26 149-174 12-38 (42)
114 3u5c_f 40S ribosomal protein S 58.8 4.8 0.00016 29.5 2.1 31 197-227 117-150 (152)
115 1k81_A EIF-2-beta, probable tr 58.7 6.8 0.00023 21.1 2.2 26 200-225 2-31 (36)
116 1vfy_A Phosphatidylinositol-3- 58.1 5.5 0.00019 25.2 2.0 33 39-71 12-44 (73)
117 2jny_A Uncharacterized BCR; st 57.2 9.3 0.00032 23.8 2.9 29 197-225 9-38 (67)
118 3u5c_f 40S ribosomal protein S 56.8 4.8 0.00017 29.5 1.8 33 127-163 118-150 (152)
119 1wfp_A Zinc finger (AN1-like) 55.9 6.8 0.00023 24.9 2.1 32 196-231 23-54 (74)
120 1vq8_Z 50S ribosomal protein L 55.2 5.9 0.0002 25.9 1.8 31 127-163 27-57 (83)
121 2kpi_A Uncharacterized protein 52.5 12 0.00041 22.3 2.8 27 197-225 9-38 (56)
122 1y02_A CARP2, FYVE-ring finger 52.3 6.5 0.00022 27.6 1.8 39 35-73 16-54 (120)
123 1wfk_A Zinc finger, FYVE domai 51.6 7.1 0.00024 25.7 1.8 36 36-71 7-42 (88)
124 1wff_A Riken cDNA 2810002D23 p 51.1 10 0.00035 24.8 2.4 30 196-228 23-52 (85)
125 1dl6_A Transcription factor II 50.3 15 0.00052 22.0 3.0 28 197-224 10-39 (58)
126 2yvr_A Transcription intermedi 48.0 4.2 0.00014 23.3 0.2 27 149-175 16-42 (50)
127 1ee8_A MUTM (FPG) protein; bet 47.9 8.5 0.00029 30.9 2.1 25 198-222 235-262 (266)
128 2xzf_A Formamidopyrimidine-DNA 47.4 7.7 0.00026 31.3 1.7 24 199-222 243-269 (271)
129 1x4v_A Hypothetical protein LO 47.3 8.8 0.0003 23.6 1.6 39 128-177 13-51 (63)
130 1wii_A Hypothetical UPF0222 pr 47.1 13 0.00043 24.4 2.4 31 197-227 22-59 (85)
131 3u6p_A Formamidopyrimidine-DNA 47.1 7.8 0.00027 31.3 1.7 24 199-222 246-272 (273)
132 2xzm_9 RPS31E; ribosome, trans 46.7 7.4 0.00025 29.6 1.4 30 197-227 112-143 (189)
133 1k82_A Formamidopyrimidine-DNA 46.2 8.2 0.00028 31.1 1.7 24 199-222 241-267 (268)
134 3h0g_L DNA-directed RNA polyme 46.1 9.4 0.00032 23.5 1.6 24 199-223 22-46 (63)
135 1k3x_A Endonuclease VIII; hydr 45.8 8.4 0.00029 30.9 1.7 24 199-222 235-261 (262)
136 2o35_A Hypothetical protein DU 43.6 11 0.00037 25.4 1.7 17 63-79 42-58 (105)
137 3fyb_A Protein of unknown func 42.9 11 0.00039 25.2 1.7 17 63-79 41-57 (104)
138 2vpb_A Hpygo1, pygopus homolog 41.9 17 0.00057 22.4 2.3 36 35-70 5-41 (65)
139 3m7n_A Putative uncharacterize 41.0 15 0.00051 27.5 2.4 23 199-223 141-164 (179)
140 1lv3_A Hypothetical protein YA 40.8 8.7 0.0003 24.0 0.8 16 195-210 6-21 (68)
141 4ayb_P DNA-directed RNA polyme 40.6 14 0.00048 21.2 1.6 30 129-162 5-34 (48)
142 1wfe_A Riken cDNA 2310008M20 p 40.3 19 0.00064 23.6 2.4 40 127-177 25-64 (86)
143 2k5c_A Uncharacterized protein 39.6 6.4 0.00022 25.4 0.1 23 85-109 9-32 (95)
144 2did_A Tripartite motif protei 39.3 9.1 0.00031 22.2 0.7 27 149-175 17-44 (53)
145 1z60_A TFIIH basal transcripti 38.1 6.5 0.00022 23.9 -0.1 35 129-172 17-51 (59)
146 2yww_A Aspartate carbamoyltran 36.9 16 0.00055 26.6 1.8 33 126-161 104-143 (149)
147 3iz6_X 40S ribosomal protein S 35.2 23 0.0008 23.1 2.2 31 128-163 37-67 (86)
148 2yrg_A Tripartite motif-contai 34.7 12 0.0004 22.4 0.7 26 149-174 23-49 (59)
149 2akl_A PHNA-like protein PA012 34.6 13 0.00045 26.3 1.0 30 125-161 25-54 (138)
150 2lbm_A Transcriptional regulat 34.5 1E+02 0.0036 22.0 5.9 51 35-94 60-116 (142)
151 3ddt_A E3 ubiquitin-protein li 34.3 9.2 0.00032 21.6 0.2 26 149-174 16-42 (48)
152 1dvp_A HRS, hepatocyte growth 34.0 13 0.00045 28.7 1.1 34 38-71 161-194 (220)
153 2csv_A Tripartite motif protei 34.0 9.9 0.00034 23.6 0.3 27 149-175 27-53 (72)
154 2kdx_A HYPA, hydrogenase/ureas 33.7 50 0.0017 22.7 4.0 48 105-160 41-99 (119)
155 3zyq_A Hepatocyte growth facto 33.6 16 0.00054 28.5 1.5 35 38-72 164-198 (226)
156 1wep_A PHF8; structural genomi 33.4 24 0.00083 22.4 2.1 61 35-101 9-69 (79)
157 3lqh_A Histone-lysine N-methyl 32.8 14 0.00048 27.9 1.0 75 39-116 3-83 (183)
158 1wys_A Riken cDNA 2310008M20 p 32.6 30 0.001 22.0 2.4 43 128-181 15-57 (75)
159 2xzm_6 RPS27E; ribosome, trans 32.2 20 0.00068 23.1 1.5 31 128-163 33-63 (81)
160 2d8u_A Ubiquitin ligase TRIM63 31.7 13 0.00043 22.4 0.5 27 149-175 18-45 (64)
161 1ef4_A Subunit N, DNA-directed 31.2 53 0.0018 19.5 3.1 13 83-97 2-14 (55)
162 3v43_A Histone acetyltransfera 31.0 48 0.0016 22.5 3.5 53 36-93 3-62 (112)
163 4esj_A Type-2 restriction enzy 30.4 29 0.00099 27.3 2.4 42 116-163 25-68 (257)
164 1gh9_A 8.3 kDa protein (gene M 30.3 34 0.0012 21.5 2.3 13 196-209 19-31 (71)
165 2k2d_A Ring finger and CHY zin 29.8 20 0.00067 23.1 1.2 27 128-160 38-64 (79)
166 2dja_A Midline-2; tripartite m 28.9 13 0.00045 23.8 0.2 27 149-175 28-55 (84)
167 3w0f_A Endonuclease 8-like 3; 28.6 28 0.00097 28.2 2.2 25 199-223 252-281 (287)
168 2jx1_A Myelin transcription fa 28.3 39 0.0013 17.5 1.9 17 128-144 2-18 (31)
169 3j20_W 30S ribosomal protein S 27.3 36 0.0012 20.8 2.0 31 128-163 16-46 (63)
170 1we9_A PHD finger family prote 27.2 25 0.00086 21.1 1.3 36 35-70 3-38 (64)
171 3a43_A HYPD, hydrogenase nicke 27.0 83 0.0028 22.3 4.3 37 105-143 39-84 (139)
172 3mjh_B Early endosome antigen 26.9 7.5 0.00026 20.7 -1.0 15 37-51 4-18 (34)
173 1pg5_B Aspartate carbamoyltran 26.9 31 0.0011 25.6 2.0 33 126-161 113-153 (168)
174 3pwf_A Rubrerythrin; non heme 26.3 58 0.002 24.1 3.5 23 128-159 139-161 (170)
175 2k5r_A Uncharacterized protein 26.1 1E+02 0.0035 20.5 4.3 51 84-144 8-68 (97)
176 2i5o_A DNA polymerase ETA; zin 26.0 30 0.001 18.9 1.4 16 195-210 6-21 (39)
177 3v2d_5 50S ribosomal protein L 25.9 39 0.0013 20.4 2.0 28 122-160 25-52 (60)
178 2fiy_A Protein FDHE homolog; F 25.9 36 0.0012 28.0 2.4 29 199-227 183-220 (309)
179 3u5c_b RP61, YS20, 40S ribosom 25.3 20 0.00069 23.1 0.6 31 128-163 35-65 (82)
180 2f9y_B Acetyl-coenzyme A carbo 25.2 15 0.00052 30.1 0.0 32 194-225 20-53 (304)
181 1odh_A MGCM1; transcription fa 24.4 28 0.00096 25.6 1.3 27 195-227 107-138 (174)
182 2a20_A Regulating synaptic mem 24.4 36 0.0012 20.5 1.6 34 35-68 6-39 (62)
183 2zjr_Z 50S ribosomal protein L 24.2 46 0.0016 20.1 2.1 27 123-160 26-52 (60)
184 1vk6_A NADH pyrophosphatase; 1 24.1 64 0.0022 25.7 3.6 28 197-224 106-134 (269)
185 1qxf_A GR2, 30S ribosomal prot 23.6 56 0.0019 20.1 2.4 31 128-163 8-38 (66)
186 2cs8_A KIAA0535 protein; ST18, 23.5 55 0.0019 22.3 2.5 19 126-144 61-79 (108)
187 2apo_B Ribosome biogenesis pro 23.4 29 0.001 21.0 1.1 36 86-123 20-55 (60)
188 3a1b_A DNA (cytosine-5)-methyl 23.4 45 0.0015 24.5 2.2 39 33-75 74-114 (159)
189 2xb1_A Pygopus homolog 2, B-ce 23.2 35 0.0012 23.0 1.6 55 37-93 2-59 (105)
190 2e72_A POGO transposable eleme 23.2 30 0.001 19.9 1.0 15 196-210 10-24 (49)
191 2zkr_2 60S ribosomal protein L 22.9 40 0.0014 22.5 1.7 22 199-223 17-39 (97)
192 3j21_g 50S ribosomal protein L 22.7 29 0.001 20.2 0.9 25 196-224 12-37 (51)
193 1qf8_A Casein kinase II; casei 22.6 1.4E+02 0.0047 22.4 4.9 14 125-138 104-117 (182)
194 3u50_C Telomerase-associated p 22.4 47 0.0016 24.7 2.3 25 198-223 42-67 (172)
195 2yuc_A TNF receptor-associated 21.5 60 0.002 19.9 2.4 18 127-145 16-33 (76)
196 3ql9_A Transcriptional regulat 21.4 1.2E+02 0.004 21.4 4.0 35 35-73 54-88 (129)
197 2be7_D Aspartate carbamoyltran 20.5 40 0.0014 24.6 1.5 34 126-161 104-144 (153)
198 3vhs_A ATPase wrnip1; zinc fin 20.2 13 0.00043 18.3 -0.9 20 83-104 5-24 (29)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.72 E-value=5.4e-18 Score=118.31 Aligned_cols=88 Identities=18% Similarity=0.464 Sum_probs=76.5
Q ss_pred CCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCC--CCHHHHhccCChhHHHHH
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQF--LDPFACKHTIPSSLFLKW 113 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~--i~~~~i~~~l~~~~~~~y 113 (237)
...++|+||++++...+ ++.+.+|+|.||.+||.+|+..++.+|...+|+||.++|... ++++.++.+|+++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~-~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQ-MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGG-EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCccccccc-ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 45789999999986543 333457999999999999999999886667899999999999 999999999999999999
Q ss_pred HHHHHHHhhcC
Q 026541 114 CDHLCEDYVLG 124 (237)
Q Consensus 114 ~~~~~~~~~~~ 124 (237)
.+++.+.++..
T Consensus 82 ~~~~~~~~v~~ 92 (94)
T 1wim_A 82 KKLQFERSGPS 92 (94)
T ss_dssp HHHHHHSSCSS
T ss_pred HHHHHHhhhcc
Confidence 99998887764
No 2
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.48 E-value=3.5e-15 Score=94.26 Aligned_cols=39 Identities=31% Similarity=0.669 Sum_probs=34.5
Q ss_pred CCcccCCCCCcceeecCCCcceEec---CCcEEEeccc--cCCC
Q 026541 196 MNWTRCPGCGNCIERKKGCRIMFCR---FIFLSLCLCI--FSNR 234 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~---C~~~fc~~c~--~~~~ 234 (237)
.++|+||+|+++|||++|||||+|+ |+++|||+|. |+.|
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 5789999999999999999999996 9999998885 5554
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.37 E-value=7.2e-15 Score=100.36 Aligned_cols=75 Identities=31% Similarity=0.617 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHHHhhc-CCCcccCCccccCceeeeccccCCcccceeCcccchhhccccccCc---CCCCCChhhhcc
Q 026541 106 PSSLFLKWCDHLCEDYVL-GFERSYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCFQCKLAW---HAGYRCEESGNL 181 (237)
Q Consensus 106 ~~~~~~~y~~~~~~~~~~-~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~---H~~~~C~~~~~~ 181 (237)
+++++++|.+++.+.+|. +++++||| +|++++..... ...+.|+.|+..||+.|+.+| |.|.+|++++.|
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~----~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w 76 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE----QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNW 76 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS----CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC----CCceEeCCCCCccccccCCchhhcCCCCChHHHHHH
Confidence 456788899998888886 57788999 99998877654 567999999999999999999 999999999988
Q ss_pred cccch
Q 026541 182 RDRND 186 (237)
Q Consensus 182 ~~~~~ 186 (237)
..+++
T Consensus 77 ~~~n~ 81 (86)
T 2ct7_A 77 KRMNS 81 (86)
T ss_dssp HHHHT
T ss_pred HHhCc
Confidence 65543
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.34 E-value=2e-14 Score=96.69 Aligned_cols=70 Identities=26% Similarity=0.533 Sum_probs=62.2
Q ss_pred cCChhHHHHHHHHHHHHhhcCCCcccCCccccCceeeeccccCCcccceeCc-----ccchhhccccccCcCCCCCChhh
Q 026541 104 TIPSSLFLKWCDHLCEDYVLGFERSYCPNRNCMAVMVNECEGIGRVKKAQCP-----KCKQWFCFQCKLAWHAGYRCEES 178 (237)
Q Consensus 104 ~l~~~~~~~y~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~-----~C~~~~C~~C~~~~H~~~~C~~~ 178 (237)
+|+++++++|++++++.++...+.+|||+|+|++++..++. ...+.|+ .|+..||+.|+.+||. .+|.+.
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~~----~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPD----QRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCSC----TTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECCC----CCcCCCCCCCCCCCCCeeccccCccccC-Cccccc
Confidence 57889999999999999998656999999999999987754 5779998 8999999999999999 999864
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=1.1e-11 Score=91.19 Aligned_cols=119 Identities=25% Similarity=0.545 Sum_probs=81.2
Q ss_pred CCCccccccccCCCcc---ccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhccCChhHHHH
Q 026541 36 DGTFTCDICIEPMSVN---NKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHTIPSSLFLK 112 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~---~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~~ 112 (237)
...++|+||++.+... ......++|||.||.+|+.+|+... ..||. |+..+....+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~l~~l~------- 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPIY------- 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTT--TCCBCTTTCEEECB-------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCC--CCCcCccccccccc-------
Confidence 5678999999988432 1222568999999999999998632 38999 99998876665531
Q ss_pred HHHHHHHHhhcCCCcccCCccccCceeeeccccCCcccceeCcccchhhccccccCcCCCCCChhhhcccccchHHHHHH
Q 026541 113 WCDHLCEDYVLGFERSYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCFQCKLAWHAGYRCEESGNLRDRNDIAFGKL 192 (237)
Q Consensus 113 y~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~ 192 (237)
...+...|| -|...+...... ........|+..||..|...|..
T Consensus 68 ----------i~~~~~~C~--iC~~~~~~~~~~---~~~~~~~~CgH~fc~~Ci~~~~~--------------------- 111 (133)
T 4ap4_A 68 ----------IGSGTVSCP--ICMDGYSEIVQN---GRLIVSTECGHVFCSQCLRDSLK--------------------- 111 (133)
T ss_dssp ----------CSSSSCBCT--TTCCBHHHHHHT---TCCEEEETTSBEEEHHHHHHHHH---------------------
T ss_pred ----------cCCCCCCCC--CCCCcccccccc---CcceEeCCCCChhhHHHHHHHHH---------------------
Confidence 124456788 787665432211 12223336899999988655531
Q ss_pred HhcCCcccCCCCCcceeec
Q 026541 193 LEKMNWTRCPGCGNCIERK 211 (237)
Q Consensus 193 ~~~~~~k~CP~C~~~iek~ 211 (237)
..+.||.|+..|.++
T Consensus 112 ----~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 ----NANTCPTCRKKINHK 126 (133)
T ss_dssp ----HCSBCTTTCCBCCGG
T ss_pred ----cCCCCCCCCCcCChh
Confidence 126999999999875
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=89.83 Aligned_cols=133 Identities=20% Similarity=0.430 Sum_probs=82.3
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhccCChhHHHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHTIPSSLFLKWC 114 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~~y~ 114 (237)
..+.+.|+||++.+... +.++|||+||..|+..++.... ..||. |+..+....+.. ...++
T Consensus 15 ~~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~~~~---~~~~~--- 75 (170)
T 3hcs_A 15 LESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQLFP---DNFAK--- 75 (170)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGGCEE---CHHHH---
T ss_pred CCCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCC-------CCCCC--CccCcchhhhhh---hHHHH---
Confidence 46678999999998543 3579999999999999987431 38998 999888754332 11211
Q ss_pred HHHHHHhhcCCCcccCCccccCceeeeccccCC----cccceeCcccchhhccccccCcCCCCCChhhhcccccchHHHH
Q 026541 115 DHLCEDYVLGFERSYCPNRNCMAVMVNECEGIG----RVKKAQCPKCKQWFCFQCKLAWHAGYRCEESGNLRDRNDIAFG 190 (237)
Q Consensus 115 ~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~----~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~ 190 (237)
+.+. .-.++||+.+|+..+.......+ ....+.|+.|+..+ .+....+|....|.
T Consensus 76 -----~~i~-~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~-------------- 134 (170)
T 3hcs_A 76 -----REIL-SLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCP-------------- 134 (170)
T ss_dssp -----HHHH-TSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCT--------------
T ss_pred -----HHHh-hcccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCC--------------
Confidence 1111 23489999999998887665221 12334455444433 22222233322332
Q ss_pred HHHhcCCcccCCCCCcceeecC
Q 026541 191 KLLEKMNWTRCPGCGNCIERKK 212 (237)
Q Consensus 191 ~~~~~~~~k~CP~C~~~iek~~ 212 (237)
.....||.|+..+...+
T Consensus 135 -----~r~~~C~~C~~~~~~~~ 151 (170)
T 3hcs_A 135 -----RRQVSCDNCAASMAFED 151 (170)
T ss_dssp -----TCEEECTTTCCEEEGGG
T ss_pred -----CCCeECCCCCCccCHHH
Confidence 34467888888776653
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=5.3e-09 Score=71.21 Aligned_cols=64 Identities=19% Similarity=0.488 Sum_probs=49.0
Q ss_pred cCCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhcc
Q 026541 34 DIDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHT 104 (237)
Q Consensus 34 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 104 (237)
......+|+||++.+...+..+..++|+|.||..|+..|+... ...+.||. |+..+....+..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----INGVRCPF--CSKITRITSLTQL 74 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----SSCBCCTT--TCCCBCCSSTTTS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----CCCcCCCC--CCCcccchhHHHH
Confidence 3466789999999986543324578999999999999999754 23579999 9988876655543
No 8
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.73 E-value=1.3e-08 Score=73.10 Aligned_cols=83 Identities=23% Similarity=0.484 Sum_probs=59.3
Q ss_pred CccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhccCChhHHHHHHHHH
Q 026541 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHTIPSSLFLKWCDHL 117 (237)
Q Consensus 38 ~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~~y~~~~ 117 (237)
.+.|+||++.+... ..++|||.||..|+..++... ...||. |+..+....+... ...+. +.+
T Consensus 23 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~-~~~l~----~~i 84 (116)
T 1rmd_A 23 SISCQICEHILADP----VETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESP-VKSFL----NIL 84 (116)
T ss_dssp HTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCC-CHHHH----HHH
T ss_pred CCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhcccc-HHHHH----HHH
Confidence 57899999988532 357999999999999999752 347999 9999987766542 11111 111
Q ss_pred HHHhhcCCCcccCCccccCceeeeccc
Q 026541 118 CEDYVLGFERSYCPNRNCMAVMVNECE 144 (237)
Q Consensus 118 ~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 144 (237)
. .-.++||+.+|+..+.....
T Consensus 85 -~-----~l~v~C~~~gC~~~~~~~~~ 105 (116)
T 1rmd_A 85 -N-----SLMVKCPAQDCNEEVSLEKY 105 (116)
T ss_dssp -H-----HCEEECCSTTCCCEEEHHHH
T ss_pred -H-----HhcCCCCCCCCcchhhHhHH
Confidence 1 22478999999988876554
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.71 E-value=1.3e-08 Score=62.89 Aligned_cols=52 Identities=21% Similarity=0.498 Sum_probs=41.5
Q ss_pred CCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
....+|+||++.+...+.....++|+|.||..|+..|+... ..||. |+..++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcCC
Confidence 45678999999985544444678999999999999999753 58998 987764
No 10
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.69 E-value=3.5e-09 Score=70.60 Aligned_cols=61 Identities=23% Similarity=0.437 Sum_probs=47.1
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHh
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACK 102 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 102 (237)
....++|+||++.+... ..++|+|.||..|+..|+...... ......||. |+..+....+.
T Consensus 9 ~~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~-~~~~~~CP~--Cr~~~~~~~l~ 69 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTS-MGGKSSCPV--CGISYSFEHLQ 69 (79)
T ss_dssp CCCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSS-CCCCCCCSS--SCCCCCSSGGG
T ss_pred cccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccC-CCCCCcCCC--CCCcCCHhhCC
Confidence 46689999999998542 457999999999999988764433 235689999 99888865544
No 11
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=3.3e-08 Score=70.39 Aligned_cols=71 Identities=24% Similarity=0.548 Sum_probs=52.0
Q ss_pred CccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhccC-ChhHHHHHHHH
Q 026541 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHTI-PSSLFLKWCDH 116 (237)
Q Consensus 38 ~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l-~~~~~~~y~~~ 116 (237)
.+.|+||++.+... ..++|+|.||..|+..++... ...+.||. |+..+....+.... -.++++.+.+.
T Consensus 21 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 21 ILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQK-----KGPSQCPL--CKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSS-----SSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred CCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhC-----CCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 57899999988432 457999999999999998743 23479999 99999877766533 33566666655
Q ss_pred HHH
Q 026541 117 LCE 119 (237)
Q Consensus 117 ~~~ 119 (237)
+..
T Consensus 90 ~~~ 92 (112)
T 1jm7_A 90 ICA 92 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 12
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.66 E-value=2.9e-08 Score=71.50 Aligned_cols=85 Identities=22% Similarity=0.465 Sum_probs=60.6
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhccCChhHHHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHTIPSSLFLKWC 114 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~~y~ 114 (237)
....+.|+||++.+... +.++|+|.||..|+..++... ...||. |+..+....+.. ...+++
T Consensus 15 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~---~~~l~~-- 76 (118)
T 3hct_A 15 LESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQLFP---DNFAKR-- 76 (118)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGGCEE---CHHHHH--
T ss_pred CCCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhC-------CCCCCC--CCCCcCHHhccc---CHHHHH--
Confidence 45678999999988543 457899999999999998743 128999 999988654332 222211
Q ss_pred HHHHHHhhcCCCcccCCccccCceeeeccc
Q 026541 115 DHLCEDYVLGFERSYCPNRNCMAVMVNECE 144 (237)
Q Consensus 115 ~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 144 (237)
.+. .-.++||+.+|...+.....
T Consensus 77 ------~i~-~l~v~C~n~gC~~~~~~~~l 99 (118)
T 3hct_A 77 ------EIL-SLMVKCPNEGCLHKMELRHL 99 (118)
T ss_dssp ------HHH-TSEEECSSTTCCCEEEGGGS
T ss_pred ------HHc-cceeECCCCCCCCEEeeHHH
Confidence 111 23489999999998887765
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=7.7e-09 Score=67.86 Aligned_cols=56 Identities=23% Similarity=0.540 Sum_probs=43.5
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFAC 101 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i 101 (237)
......|+||++.+... ..++|+|.||..|+..++.. ......||. |+..+..+.+
T Consensus 17 ~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~--Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGET-----SCGFFKCPL--CKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSE----EECTTCCEEEHHHHHHHCSS-----SCSCCCCSS--SCCCCCCCCC
T ss_pred CccCCEeccCCcccCCe----EEcCCCChhhHHHHHHHHHc-----CCCCCCCCC--CCCcCCcccC
Confidence 46678999999988532 45699999999999998862 234679999 9988876543
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.9e-08 Score=67.80 Aligned_cols=60 Identities=27% Similarity=0.589 Sum_probs=47.2
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHh
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACK 102 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 102 (237)
....++|+||++.+... ..++|+|.||..|+..++..+...+ ..+.||. |+..+....+.
T Consensus 16 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLDK--GESSCPV--CRISYQPENIR 75 (85)
T ss_dssp CCCCCCCTTTCSCCSSC----BCCSSSCCBCTTHHHHHHHHHHHTT--SCCCCTT--TCCSSCSSSCC
T ss_pred ccCCCCCCCCCcccCCc----eeCCCCCHHHHHHHHHHHHHhhcCC--CCCcCCC--CCCccCHHhcC
Confidence 45678999999998432 4579999999999999998765442 3679999 99888865443
No 15
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=6.5e-09 Score=66.70 Aligned_cols=59 Identities=19% Similarity=0.367 Sum_probs=43.5
Q ss_pred Ccccccccc-CCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhccC
Q 026541 38 TFTCDICIE-PMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHTI 105 (237)
Q Consensus 38 ~~~C~iC~~-~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l 105 (237)
..+|+||++ .+.........++|||.||..|+.+++.. ....||. |+..+....++..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-------GAGNCPE--CGTPLRKSNFRVQL 62 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-------TSSSCTT--TCCCCSSCCCEEEC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-------CCCcCCC--CCCccccccceeec
Confidence 578999999 55333222235799999999999999762 1458999 99999877776544
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.62 E-value=3.2e-08 Score=66.64 Aligned_cols=60 Identities=28% Similarity=0.511 Sum_probs=46.9
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHh
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACK 102 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 102 (237)
....++|+||++.+... ..++|+|.||..|+..++...... ...+.||. |+..+..+.+.
T Consensus 16 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~--~~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNT--DGKGNCPV--CRVPYPFGNLK 75 (85)
T ss_dssp CCTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCT--TSCBCCTT--TCCCCCTTCCE
T ss_pred CccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCC--CCCCCCCC--CCCcCCHHhCC
Confidence 45678999999998543 367899999999999999876532 34689999 99988866544
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=2.1e-08 Score=64.46 Aligned_cols=53 Identities=17% Similarity=0.616 Sum_probs=42.0
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFA 100 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 100 (237)
....++|+||++.+... ..++|+|.||..|+..++. .....||. |+..+..++
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~-------~~~~~CP~--Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLS-------SSSPKCTA--CQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHT-------TSSCCCTT--TCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHH-------hCcCCCCC--CCcCCChhh
Confidence 45678999999988432 3579999999999999985 12458999 998887654
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.1e-08 Score=65.71 Aligned_cols=58 Identities=21% Similarity=0.444 Sum_probs=44.6
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhccC
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHTI 105 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l 105 (237)
....++|+||++.+... + .+.+|+|.||..|+..|+.. ...||. |+..+...++...+
T Consensus 12 ~~~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--T-TITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQTQPLSGP 69 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--E-ECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSSCSCCCC
T ss_pred cCCCCCCCCCChHHHCc--C-EECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcccccccC
Confidence 45678999999988542 1 34599999999999999964 258999 99998876655443
No 19
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.56 E-value=3.4e-09 Score=78.88 Aligned_cols=93 Identities=17% Similarity=0.299 Sum_probs=59.3
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhccCChh-HHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHTIPSS-LFLKW 113 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~-~~~~y 113 (237)
....++|+||++.+... +.++|||.||..|+..++.. ....||. |..++.......+++.+ ++
T Consensus 28 l~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~l~~~~~~--- 91 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSS-------GPQNCAA--CVHEGIYEEGISILESSSAF--- 91 (141)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGG-------SCEECHH--HHHTTCCCTTTTEECGGGCE---
T ss_pred CCcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhc-------CCCCCCC--CCCcccccccccccchhhhc---
Confidence 46688999999988543 45799999999999998852 2358998 98766443332222211 11
Q ss_pred HHHHHHHhhcCCCcccCCccccCceeeeccc
Q 026541 114 CDHLCEDYVLGFERSYCPNRNCMAVMVNECE 144 (237)
Q Consensus 114 ~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 144 (237)
.....++.+. .-.++||+.+|...+.....
T Consensus 92 ~d~~~~~~i~-~L~v~Cpn~GC~~~~~l~~l 121 (141)
T 3knv_A 92 PDNAARREVE-SLPAVCPSDGCTWKGTLKEY 121 (141)
T ss_dssp ECHHHHHHHH-TSEEECCSTTCCCEEEHHHH
T ss_pred ccHHHHHHHc-ccccccCCCCCCCEeEHHHH
Confidence 0011111121 23489999999988876654
No 20
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.56 E-value=4.7e-08 Score=64.94 Aligned_cols=67 Identities=19% Similarity=0.365 Sum_probs=47.9
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHh-ccCChhHHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACK-HTIPSSLFLKW 113 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~-~~l~~~~~~~y 113 (237)
....+.|+||++.+... +.++|||+||..|+..|+.. ....||. |+..+....+. ...-.++++.|
T Consensus 5 ~~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~-------~~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDA-------GHKTCPK--SQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp CSSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTT-------TCCBCTT--TCCBCSSCCCEECTTTHHHHHHH
T ss_pred CcccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHH-------CcCCCCC--CcCCCChhhCccCHHHHHHHHHH
Confidence 46689999999988543 45789999999999999962 1458999 99888765433 22233444544
Q ss_pred H
Q 026541 114 C 114 (237)
Q Consensus 114 ~ 114 (237)
.
T Consensus 72 ~ 72 (78)
T 1t1h_A 72 C 72 (78)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.56 E-value=3.6e-08 Score=65.58 Aligned_cols=58 Identities=17% Similarity=0.417 Sum_probs=41.7
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFAC 101 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i 101 (237)
..+..+|+||++++...+..+..++|||.||..||.+++.. ....||. |...+....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~--CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------ENGLCPA--CRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTT--TCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------CCCCCCC--CCCccCCCch
Confidence 35678999999988543332222459999999999987642 2468999 9988875443
No 22
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.54 E-value=2.4e-08 Score=65.06 Aligned_cols=59 Identities=24% Similarity=0.576 Sum_probs=45.2
Q ss_pred CCCCccccccccCCCcc---ccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhc
Q 026541 35 IDGTFTCDICIEPMSVN---NKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKH 103 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~---~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~ 103 (237)
.....+|+||++.+... ......++|+|.||..|+..|+... ..||. |+..+....+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHP 68 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCCSCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChhheee
Confidence 45678999999987432 1222578999999999999998642 38999 999988766654
No 23
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.53 E-value=3e-08 Score=68.11 Aligned_cols=51 Identities=24% Similarity=0.515 Sum_probs=40.5
Q ss_pred cCCCCccccccccCCCccccccccCC-CCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCC
Q 026541 34 DIDGTFTCDICIEPMSVNNKFKNNNL-CTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFL 96 (237)
Q Consensus 34 ~~~~~~~C~iC~~~~~~~~~~~~~~~-C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i 96 (237)
.....++|+||++.+... +.++ |||.||..|+..++... ....||. |+..+
T Consensus 9 ~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHC------TTCCCTT--TCCSS
T ss_pred cCCcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhc------CCCcCcC--CCCcC
Confidence 346689999999988533 4577 99999999999998732 2369999 99886
No 24
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.52 E-value=3e-08 Score=63.12 Aligned_cols=58 Identities=21% Similarity=0.541 Sum_probs=44.2
Q ss_pred CCccccccccCCCcc---ccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhcc
Q 026541 37 GTFTCDICIEPMSVN---NKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHT 104 (237)
Q Consensus 37 ~~~~C~iC~~~~~~~---~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 104 (237)
+..+|+||++.+... ......++|+|.||.+|+..|+.. ...||. |+..+...++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCccceeee
Confidence 467899999987432 122246899999999999999874 238999 9999887766553
No 25
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.51 E-value=1.6e-07 Score=65.53 Aligned_cols=56 Identities=21% Similarity=0.546 Sum_probs=44.9
Q ss_pred CCCccccccccCCCcccccccc-CCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhcc
Q 026541 36 DGTFTCDICIEPMSVNNKFKNN-NLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHT 104 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~-~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 104 (237)
.+.++|+||++.+... +. ++|+|.||..|+..|+... ...||. |...+....+...
T Consensus 20 ~~~~~C~IC~~~~~~p----~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA----RLCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRELVNC 76 (100)
T ss_dssp HHHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCEEC
T ss_pred CCCCCCccCCccccCc----cccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHHhHhh
Confidence 3468899999998532 34 8999999999999999753 168999 9999987776654
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=9e-08 Score=60.83 Aligned_cols=46 Identities=24% Similarity=0.586 Sum_probs=36.1
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCC
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPG 89 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~ 89 (237)
....++|+||++.+... ..++|+|.||..|+.+|+... .....||.
T Consensus 17 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~ 62 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETS-----CGFFKCPL 62 (63)
T ss_dssp CCCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHC-----SSCCCCSC
T ss_pred CccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcC-----CCCCcCcC
Confidence 46688999999988532 456999999999999999741 23468886
No 27
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=4e-08 Score=64.13 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=43.9
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhc
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKH 103 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~ 103 (237)
.....+|+||++.+... ..++|+|.||..|+..|+... ..||. |+..+....+..
T Consensus 12 ~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASWLG--------KRCAL--CRQEIPEDFLDS 66 (71)
T ss_dssp SSSCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTTCS--------SBCSS--SCCBCCHHHHSC
T ss_pred CCCCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHHCC--------CcCcC--cCchhCHhhccC
Confidence 35578999999988432 456899999999999887532 58999 999999877765
No 28
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.50 E-value=1.3e-07 Score=61.23 Aligned_cols=53 Identities=23% Similarity=0.525 Sum_probs=41.3
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
......|+||++.+...+.. ..++|+|.||..|+..|+... ..||. |+..|..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDV-RRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCE-EECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcE-EEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCccccC
Confidence 46678999999988554333 468999999999999998752 25999 9977753
No 29
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.46 E-value=1e-07 Score=58.82 Aligned_cols=51 Identities=20% Similarity=0.522 Sum_probs=39.1
Q ss_pred CCCccccccccCCCccccccccC-CCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNN-LCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~-~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
....+|+||++++...+.. ..+ .|+|.||.+|+..|+.. ...||. |+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~-~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEA-RFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCC-EECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCSC
T ss_pred CCCCcCccCCccccCCCce-EECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEeE
Confidence 4567999999999665444 345 49999999999998753 237999 987764
No 30
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.45 E-value=5.7e-08 Score=64.55 Aligned_cols=58 Identities=22% Similarity=0.562 Sum_probs=44.6
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhc
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKH 103 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~ 103 (237)
.....+|+||++.+...... ..++|+|.||..|+..|+... ..||. |+..+....+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESV-RQLPCNHLFHDSCIVPWLEQH--------DSCPV--CRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCE-EECTTSCEEETTTTHHHHTTT--------CSCTT--TCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCE-EEeCCCCeecHHHHHHHHHcC--------CcCcC--cCCccCCcccCC
Confidence 45678999999998654433 457899999999999998532 38999 998887655443
No 31
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.5e-07 Score=61.77 Aligned_cols=53 Identities=25% Similarity=0.649 Sum_probs=41.4
Q ss_pred cCCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 34 DIDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 34 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
......+|.||++.+...... ..++|+|.||..|+..|+... ..||. |+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCE-EEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred cCCCCCCCcCCCcccCCCCcE-EEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 345678999999998654433 356899999999999999642 27999 997765
No 32
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1.9e-07 Score=62.47 Aligned_cols=49 Identities=24% Similarity=0.546 Sum_probs=40.1
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
....+.|+||++.+... ..++|+|.||..|+..++.. ...||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 45678999999998432 46899999999999999863 348999 998886
No 33
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1.2e-07 Score=61.22 Aligned_cols=53 Identities=26% Similarity=0.678 Sum_probs=40.8
Q ss_pred CCCCccccccccCCCcc---ccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 35 IDGTFTCDICIEPMSVN---NKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~---~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
.....+|+||++.+... ......++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccC
Confidence 45678999999987432 122246899999999999999874 248999 998775
No 34
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.41 E-value=1.5e-07 Score=61.92 Aligned_cols=51 Identities=24% Similarity=0.515 Sum_probs=40.0
Q ss_pred cCCCCccccccccCCCccccccccCC-CCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCC
Q 026541 34 DIDGTFTCDICIEPMSVNNKFKNNNL-CTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFL 96 (237)
Q Consensus 34 ~~~~~~~C~iC~~~~~~~~~~~~~~~-C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i 96 (237)
.....+.|+||++.+... +.++ |+|.||..|+..|+... ....||. |+..+
T Consensus 11 ~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 62 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHHS------SSSCCSS--SCCSS
T ss_pred cCCCCCCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHhc------CCCcCCC--CCCcC
Confidence 345678999999988542 4577 99999999999999753 1468999 99764
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2.5e-07 Score=57.57 Aligned_cols=46 Identities=24% Similarity=0.614 Sum_probs=35.4
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCC
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPG 89 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~ 89 (237)
......|+||++.+... ..++|+|.||..|+..|+... .....||.
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~ 57 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDL-----ERDFPCPV 57 (58)
T ss_dssp SCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSS-----CCSCCCSC
T ss_pred cccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhc-----CCCCCCCC
Confidence 45678999999998543 457999999999999997531 13467886
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.36 E-value=2.6e-07 Score=64.26 Aligned_cols=67 Identities=24% Similarity=0.507 Sum_probs=45.9
Q ss_pred CCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhc-cCChhHHHHHHH
Q 026541 37 GTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKH-TIPSSLFLKWCD 115 (237)
Q Consensus 37 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~-~l~~~~~~~y~~ 115 (237)
..++|+||++.+... + ...+|||.||..|+..|+.. ...||. |+..+....+.. ..-.++++++.+
T Consensus 21 ~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--M-IIPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHTBCTTTCSBCSSE--E-ECTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCc--C-EECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCChhhCCcCHHHHHHHHHHHH
Confidence 357899999998542 1 23489999999999999863 248998 999988654432 222234444444
Q ss_pred H
Q 026541 116 H 116 (237)
Q Consensus 116 ~ 116 (237)
.
T Consensus 88 ~ 88 (99)
T 2y43_A 88 A 88 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 37
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=1.4e-07 Score=62.14 Aligned_cols=53 Identities=21% Similarity=0.504 Sum_probs=41.7
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
.....+|.||++++...+.+ ..++|+|.||..|+..|+... ..||. |+..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEE-EEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeE-EEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCCC
Confidence 34578999999998665443 467899999999999998642 37999 9987764
No 38
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.33 E-value=7.3e-07 Score=65.89 Aligned_cols=46 Identities=33% Similarity=0.735 Sum_probs=37.0
Q ss_pred CccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 38 ~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
.++|+||++.+... +.++|||.||..|+..|+.. ...||. |..++.
T Consensus 53 ~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSE----EEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCC
T ss_pred cCCCcccCcccCCc----eECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCC
Confidence 46899999988432 46799999999999998752 247999 998875
No 39
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.33 E-value=1.1e-07 Score=65.20 Aligned_cols=53 Identities=21% Similarity=0.548 Sum_probs=41.1
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
.....+|.||++.+...+.. ..++|+|.||..|+..|+... ..||. |...+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~-~~l~C~H~Fh~~Ci~~wl~~~--------~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVA-TELPCHHYFHKPCVSIWLQKS--------GTCPV--CRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEE-EEETTTEEEEHHHHHHHHTTT--------CBCTT--TCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcE-EecCCCChHHHHHHHHHHHcC--------CcCcC--cCccCCC
Confidence 35677899999998654433 467899999999999998531 28999 9987753
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.31 E-value=2.3e-07 Score=67.33 Aligned_cols=50 Identities=28% Similarity=0.644 Sum_probs=40.0
Q ss_pred CCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
...++|+||++.+... +.++|||.||..|+..++.. ....||. |+..+..
T Consensus 50 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred ccCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 3457899999998532 45799999999999999971 2358999 9988875
No 41
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.30 E-value=1.5e-07 Score=58.37 Aligned_cols=47 Identities=19% Similarity=0.457 Sum_probs=37.1
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
..+.++|+||++.+... ..++|+|.||..|+.. ..+.||. |+..+..
T Consensus 3 e~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSSC
T ss_pred cccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----------CCCCCCc--CCcEeec
Confidence 35678999999988542 5689999999999765 2568999 9977663
No 42
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.29 E-value=6e-07 Score=64.02 Aligned_cols=57 Identities=21% Similarity=0.506 Sum_probs=41.5
Q ss_pred CCCccccccccCCCccc--------------cccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 36 DGTFTCDICIEPMSVNN--------------KFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~--------------~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
....+|+||++++.... .+...++|+|.||..||..|+...-. .....||. |...+.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~---~~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK---DGSLQCPS--CKTIYG 93 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC---SSCCBCTT--TCCBSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC---CCCCcCCC--CCCccC
Confidence 44579999999985422 12236889999999999999954321 23568999 997765
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=8.1e-07 Score=61.19 Aligned_cols=60 Identities=28% Similarity=0.551 Sum_probs=45.7
Q ss_pred CCCccccccccCCCccccccccC-CCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCC-CCHHHH
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNN-LCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQF-LDPFAC 101 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~-~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~-i~~~~i 101 (237)
...+.|+||++.+... +.+ .|||+||+.||..|+...-. ......||..+|... +....+
T Consensus 5 ~~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHccC--cCCCCCCCcCcCcccccCHhhC
Confidence 5678999999988543 456 49999999999999975421 224679999999877 765544
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.20 E-value=2.6e-06 Score=57.47 Aligned_cols=52 Identities=10% Similarity=-0.080 Sum_probs=42.6
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFA 100 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 100 (237)
....+.|+||++.+... +.++|||+||+.|+..|+.. ...||. |+.++....
T Consensus 11 ~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGG
T ss_pred CchheECcccCchhcCC----eECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChHh
Confidence 46689999999988543 56789999999999999973 247999 999988654
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.19 E-value=1.2e-06 Score=65.63 Aligned_cols=50 Identities=26% Similarity=0.606 Sum_probs=40.8
Q ss_pred CCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHH
Q 026541 37 GTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPF 99 (237)
Q Consensus 37 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 99 (237)
..+.|+||++.+... +.++|+|.||..|+..++.. ..+.||. |...+...
T Consensus 77 ~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 467999999988432 45899999999999999973 2468999 99888765
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.15 E-value=4e-07 Score=65.38 Aligned_cols=47 Identities=23% Similarity=0.453 Sum_probs=37.9
Q ss_pred CCccccccccCCCccccccccC-CCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHH
Q 026541 37 GTFTCDICIEPMSVNNKFKNNN-LCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPF 99 (237)
Q Consensus 37 ~~~~C~iC~~~~~~~~~~~~~~-~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 99 (237)
..++|+||++.+... +.+ +|||.||..|+..++. ..||. |+..+...
T Consensus 21 ~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSCS
T ss_pred hCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCccc
Confidence 478999999988543 455 8999999999988764 58999 99887643
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.15 E-value=1.6e-06 Score=55.80 Aligned_cols=49 Identities=29% Similarity=0.589 Sum_probs=38.8
Q ss_pred CCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
....+|+||++.+... . ..++|+|.||..|+..|+... ..||. |+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~--~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--S-MALPCLHAFCYVCITRWIRQN--------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC--E-EETTTTEEESTTHHHHHHHHS--------CSTTT--TCCCCC
T ss_pred CCCCCCeeCCccccCC--c-EecCCCCeeHHHHHHHHHhCc--------CcCcC--CChhhH
Confidence 4567899999998432 1 468899999999999998532 38999 998876
No 48
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.15 E-value=7.1e-07 Score=63.07 Aligned_cols=50 Identities=26% Similarity=0.614 Sum_probs=39.3
Q ss_pred CCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
...++|+||++.+... + .+.+|||.||..|+..++... ..||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--T-TIIECLHSFCKTCIVRYLETS--------KYCPI--CDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSE--E-EETTTCCEEEHHHHHHHHTSC--------SBCTT--TCCBSCS
T ss_pred CCcCCCccCChHHhCc--C-EeCCCCChhhHHHHHHHHHhC--------CcCcC--CCccccc
Confidence 4578999999988532 1 234999999999999998642 68999 9988764
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.13 E-value=7.5e-07 Score=63.64 Aligned_cols=49 Identities=27% Similarity=0.644 Sum_probs=38.5
Q ss_pred CCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 37 GTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 37 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
..++|+||++.+... +.++|+|.||..|+..++.. ....||. |+..+..
T Consensus 14 ~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEK-------ASLCCPF--CRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCT-------TTSBCTT--TCCBCHH
T ss_pred CCCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhH-------CcCCCCC--CCcccCc
Confidence 357899999988532 45799999999999887642 2368999 9998875
No 50
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.1e-07 Score=61.75 Aligned_cols=50 Identities=26% Similarity=0.606 Sum_probs=39.1
Q ss_pred cCCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 34 DIDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 34 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
......+|+||++.+.. ..++|+|.||..|+..|+. ....||. |+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--------~~~~CP~--Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--------RHRNCPI--CRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--------CCSSCHH--HHHCTTC
T ss_pred cCCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--------CcCcCCC--cCCcccC
Confidence 34667899999998843 3689999999999998775 2358998 8866653
No 51
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=6.4e-06 Score=54.11 Aligned_cols=43 Identities=23% Similarity=0.508 Sum_probs=33.4
Q ss_pred CccccccccCCCccccccccCCCCCc-ccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 38 TFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 38 ~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
..+|+||++.+... ..++|+|. ||..|+.. ...||. |+..+..
T Consensus 25 ~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA------------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCCC
T ss_pred CCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC------------CCCCcc--CCceecC
Confidence 45899999987432 56899999 99999853 158999 9988763
No 52
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=8.1e-07 Score=59.43 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=39.4
Q ss_pred CCCccccccccCCCc-----------cccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHH
Q 026541 36 DGTFTCDICIEPMSV-----------NNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFA 100 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~-----------~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 100 (237)
....+|.||++++.. .+....+..|+|.|+.+|+.+|+... -.||. |+..+....
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~~~~ 78 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWVVQR 78 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCCEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcchhh
Confidence 346678888888743 22233345699999999999998642 28999 998876543
No 53
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.95 E-value=2.1e-06 Score=69.38 Aligned_cols=59 Identities=22% Similarity=0.401 Sum_probs=45.9
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHh
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACK 102 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 102 (237)
....+.|+||++.+..+ + ....|||+||+.|+..|+... ....||..||...+....+.
T Consensus 178 ~~~el~CPIcl~~f~DP--V-ts~~CGHsFcR~cI~~~~~~~------~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--L-ISRKCNHVFDRDGIQNYLQGY------TTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--E-EESSSCCEEEHHHHHHHSTTC------SCEECSGGGCSCEECGGGEE
T ss_pred CceeeECcCccCcccCC--e-eeCCCCCcccHHHHHHHHHhC------CCCCCCcccccCcCchhhCC
Confidence 35678999999998543 2 235899999999999998631 34789999999988866554
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.95 E-value=7.6e-06 Score=56.70 Aligned_cols=52 Identities=10% Similarity=-0.162 Sum_probs=42.2
Q ss_pred CCCCccccccccCCCccccccccCCCC-CcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCT-HPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFA 100 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~-H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 100 (237)
....+.|+||++.+... +.++|| |+||+.|+..|+.. ...||. |+.++....
T Consensus 19 ~p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~~ 71 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMDQ 71 (98)
T ss_dssp CCTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTTT
T ss_pred CcHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChhh
Confidence 46689999999988543 568999 99999999999873 137999 999888643
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.95 E-value=5.3e-06 Score=57.73 Aligned_cols=51 Identities=10% Similarity=-0.107 Sum_probs=41.7
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPF 99 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 99 (237)
....+.|+||++.+... +.++|||+||+.|+..|+.. ...||. |+.++...
T Consensus 26 ~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCTT
T ss_pred CcHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCChh
Confidence 46689999999988543 56789999999999999862 247999 99988764
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.89 E-value=6.6e-06 Score=67.56 Aligned_cols=53 Identities=11% Similarity=-0.057 Sum_probs=42.3
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFA 100 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 100 (237)
....+.|+||++.+..+ +.++|||+||+.|+..|+... + ..||. |+.+++...
T Consensus 205 ~~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~----~---~~cP~--~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRV----G---HFNPV--TRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHT----C---SSCTT--TCCCCCGGG
T ss_pred CCcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHC----C---CCCcC--CCCCCchhc
Confidence 46789999999998543 568899999999999999641 1 23999 999997654
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.86 E-value=1.6e-06 Score=56.92 Aligned_cols=42 Identities=24% Similarity=0.555 Sum_probs=33.8
Q ss_pred CccccccccCCCccccccccCCCCCc-ccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 38 TFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 38 ~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
...|.||++.+... ..++|+|. ||..|+..+ ..||. |+..+.
T Consensus 24 ~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------------DKCPM--CYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC------------SBCTT--TCCBCS
T ss_pred CCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC------------ccCCC--cCcCcc
Confidence 46899999987432 46799999 999997654 58999 998876
No 58
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.83 E-value=9e-06 Score=61.79 Aligned_cols=49 Identities=29% Similarity=0.798 Sum_probs=38.3
Q ss_pred CCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 37 GTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 37 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
..+.|+||++.+... + .+.+|+|.||..|+..|+.. ....||. |+..+.
T Consensus 53 ~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--M-TTKECLHRFCADCIITALRS-------GNKECPT--CRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE--E-EETTTCCEEEHHHHHHHHHT-------TCCBCTT--TCCBCC
T ss_pred CCCCCcccChHhhCc--C-EeCCCCChhHHHHHHHHHHh-------CcCCCCC--CCCcCC
Confidence 346999999998542 1 34599999999999999872 1357999 998885
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.79 E-value=7.7e-06 Score=59.48 Aligned_cols=60 Identities=23% Similarity=0.552 Sum_probs=45.7
Q ss_pred CCCCccccccccCCCcc---ccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhcc
Q 026541 35 IDGTFTCDICIEPMSVN---NKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKHT 104 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~---~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 104 (237)
+.....|+||++.+... ......++|+|.||..|+..|+... ..||. |+..+..+.+..+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTT--TCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCC--CCCcCChhcceee
Confidence 46788899999887432 1122467899999999999998642 38999 9999998776653
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.78 E-value=3.6e-05 Score=59.05 Aligned_cols=55 Identities=11% Similarity=-0.037 Sum_probs=43.6
Q ss_pred hcCCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHH
Q 026541 33 EDIDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFA 100 (237)
Q Consensus 33 ~~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 100 (237)
......+.|+||++.+..+ +.++|||+||+.|+..|+... | . .||. |+.+++...
T Consensus 101 ~~ip~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~---~-~---tcP~--t~~~l~~~~ 155 (179)
T 2f42_A 101 REIPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRV---G-H---FDPV--TRSPLTQDQ 155 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHT---C-S---BCTT--TCCBCCGGG
T ss_pred cCCcHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhC---C-C---CCCC--CcCCCChhh
Confidence 3457789999999988543 567999999999999999742 1 1 6999 999988654
No 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=3.1e-05 Score=51.46 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=42.1
Q ss_pred CCCCccccccccCCCccccccccCCCC-----CcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCT-----HPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPF 99 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 99 (237)
......|.||++++...+.+ .++|. |.|+.+||.+|+... ....||. |+..+..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~------~~~~Cpl--Cr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSS------DTRCCEL--CKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHH------CCSBCSS--SCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhC------CCCCCCC--CCCeeecC
Confidence 34567899999988654443 57885 999999999999864 2368999 99887643
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.58 E-value=6.3e-05 Score=52.77 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=39.5
Q ss_pred CCCccccccccCCCcc--------------ccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 36 DGTFTCDICIEPMSVN--------------NKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~--------------~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
....+|.||++.+... +.....++|+|.|+..|+..|+.. ...||. |...+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBCCE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCccee
Confidence 4567899999998532 111235789999999999999864 247998 9987753
No 63
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.58 E-value=6e-05 Score=64.54 Aligned_cols=52 Identities=23% Similarity=0.445 Sum_probs=40.5
Q ss_pred CCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHH
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFA 100 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 100 (237)
....+|+||++..... +.++|+|.||..|+..++.. ....||. |...+....
T Consensus 330 ~~~~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~-------~~~~CP~--CR~~i~~~~ 381 (389)
T 2y1n_A 330 STFQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQES-------EGQGCPF--CRCEIKGTE 381 (389)
T ss_dssp TSSSBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHH-------TCSBCTT--TCCBCCEEE
T ss_pred CCCCCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhc-------CCCCCCC--CCCccCCce
Confidence 4458999999987432 56899999999999998863 1248999 998887543
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=3.3e-05 Score=49.64 Aligned_cols=45 Identities=24% Similarity=0.590 Sum_probs=35.3
Q ss_pred CCCccccccccCCCccccccccCCCCCc-ccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
.....|.||++.... ..+++|+|. ||..|+.. ...||. |...|..
T Consensus 13 ~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~------------~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKY------------FQQCPM--CRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHH------------CSSCTT--TCCCCCC
T ss_pred CCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhc------------CCCCCC--CCcchhc
Confidence 457889999997632 257899999 99999873 148999 9988763
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.52 E-value=8.4e-06 Score=54.15 Aligned_cols=43 Identities=23% Similarity=0.649 Sum_probs=33.8
Q ss_pred CccccccccCCCccccccccCCCCCc-ccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCH
Q 026541 38 TFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 38 ~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 98 (237)
...|.||++..... .+++|||. ||..|+..+ ..||. |...+..
T Consensus 18 ~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINS----TFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCEeEEeCcccCcE----EEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 45899999877332 56899999 999997642 28999 9988874
No 66
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.48 E-value=4.3e-05 Score=48.29 Aligned_cols=50 Identities=16% Similarity=0.345 Sum_probs=36.3
Q ss_pred CCCccccccccCCCccccccccCCCCCc-ccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
.....|.||++..... ....++|||. ||.+|...+... .-.||. |..+|.
T Consensus 5 ~~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKA--------GASCPI--CKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHT--------TCBCTT--TCCBCC
T ss_pred CcCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHh--------CCcCCC--cCchhh
Confidence 3456899999976332 1123499998 999999987642 148999 998875
No 67
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.47 E-value=4.5e-05 Score=48.35 Aligned_cols=49 Identities=22% Similarity=0.374 Sum_probs=35.7
Q ss_pred CCccccccccCCCccccccccCCCCCc-ccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 37 GTFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 37 ~~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
...+|.||++..... ....++|||. +|.+|+..+... .-.||. |...+.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 456899999987432 1112399999 899999987752 137999 998875
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.22 E-value=6e-05 Score=53.74 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=1.3
Q ss_pred CCCccccccccCCCcc--------------ccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHH
Q 026541 36 DGTFTCDICIEPMSVN--------------NKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPF 99 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~--------------~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 99 (237)
....+|.||++++... +..+..++|+|.|+..|+..|+.. ...||. |...+...
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--------~~~CP~--Cr~~~~~~ 113 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEFQ 113 (117)
T ss_dssp CCC---------------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--------CCcCCC--CCCeeeee
Confidence 3456899999998531 111223589999999999999874 237998 98876543
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.20 E-value=0.00033 Score=45.64 Aligned_cols=52 Identities=21% Similarity=0.559 Sum_probs=40.3
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
.+...+|.||++.+.... ....|+|.|...|+.+|++..- .-.||. |+..+.
T Consensus 12 ~~~i~~C~IC~~~i~~g~---~C~~C~h~fH~~Ci~kWl~~~~------~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNA------EPRCPH--CNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE---ECSSSCCEECHHHHHHHSTTCS------SCCCTT--TCSCCC
T ss_pred cCCCCcCcchhhHcccCC---ccCCCCchhhHHHHHHHHHhcC------CCCCCC--CcCcCC
Confidence 355789999999996543 2348999999999999997432 248999 998776
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.75 E-value=0.00018 Score=60.91 Aligned_cols=43 Identities=26% Similarity=0.644 Sum_probs=34.7
Q ss_pred CCccccccccCCCccccccccCCCCCc-ccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 37 GTFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 37 ~~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
....|+||++.+... +.++|||. ||..|+..+ ..||. |...+.
T Consensus 294 ~~~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV----VFIPCGHLVVCQECAPSL------------RKCPI--CRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE----EEETTCCEEECTTTGGGC------------SBCTT--TCCBCC
T ss_pred CCCCCCccCCcCCce----EEcCCCChhHhHHHHhcC------------CcCCC--CCCCcc
Confidence 458999999987432 46799999 999997743 48999 998876
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.61 E-value=0.0016 Score=54.63 Aligned_cols=64 Identities=16% Similarity=0.329 Sum_probs=45.1
Q ss_pred CCCCccccccccCCCcccccc----ccCCCCCcccHHHHHHHHHhhcccC---CceeecCCCCcCCCCCCHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFK----NNNLCTHPFCQDCTVKYIEVKVRDN---NTAKIECPGLHCEQFLDPFA 100 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~----~~~~C~H~~C~~Cl~~~~~~~i~~~---~~~~i~CP~~~C~~~i~~~~ 100 (237)
.....+|.||++.+......+ ....|+|.|...||..|+.+.-... +...=.||. |+.+|+..+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~sf 375 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLSTSF 375 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCccH
Confidence 356779999999986533322 1247999999999999998754321 122348998 999888443
No 72
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.51 E-value=0.0015 Score=40.65 Aligned_cols=40 Identities=25% Similarity=0.738 Sum_probs=34.9
Q ss_pred CCcccCCccccCceeeeccccCCcccceeCcc--cchhhccccccCcC
Q 026541 125 FERSYCPNRNCMAVMVNECEGIGRVKKAQCPK--CKQWFCFQCKLAWH 170 (237)
Q Consensus 125 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~--C~~~~C~~C~~~~H 170 (237)
.+.+.|| +|+..+....+ -+.++|.. |+..||+.|..+|.
T Consensus 4 ~~~k~CP--~C~~~Iek~~G----CnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 4 ANTKECP--KCHVTIEKDGG----CNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCCT--TTCCCCSSCCS----CCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ccceECc--CCCCeeEeCCC----CCcEEECCCCcCCEEeeCcCCCcc
Confidence 4567899 99999998876 78999988 99999999999873
No 73
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.11 E-value=0.011 Score=36.65 Aligned_cols=50 Identities=20% Similarity=0.470 Sum_probs=36.6
Q ss_pred CCCccccccccCCCccccccccCCC--CC---cccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLC--TH---PFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C--~H---~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
.....|.||+++.. +.. .++| .+ .|..+||.+|+..+- ...||. |+..+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~------~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER--FRACGCTGELENVHRSCLSTWLTISR------NTACQI--CGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC--CCSCCCSSGGGSCCHHHHHHHHHHHT------CSBCTT--TCCBCC
T ss_pred CCCCEeEEeecCCC--Cce--ecCcCCCCchhhhHHHHHHHHHHhCC------CCccCC--CCCeee
Confidence 45778999998752 222 4665 45 899999999997542 368999 987765
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.96 E-value=0.0084 Score=41.16 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.4
Q ss_pred ccceeCcccchhhcccccc-CcCCCCC
Q 026541 149 VKKAQCPKCKQWFCFQCKL-AWHAGYR 174 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 174 (237)
...+.|..|+..+|..|.. ..|.++.
T Consensus 69 ~l~~fC~~~~~~iC~~C~~~~~H~~H~ 95 (101)
T 2jun_A 69 KVNMYCVTDDQLICALCKLVGRHRDHQ 95 (101)
T ss_dssp CCCEEETTTTEEECHHHHHHTTTSSSC
T ss_pred cceEECCCCCCccchhcCCCCCcCCCC
Confidence 5788999999999999987 6788775
No 75
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=95.73 E-value=0.008 Score=37.38 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=40.0
Q ss_pred CccccccccCCCccccccccC-CCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHHhc
Q 026541 38 TFTCDICIEPMSVNNKFKNNN-LCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFACKH 103 (237)
Q Consensus 38 ~~~C~iC~~~~~~~~~~~~~~-~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~ 103 (237)
.+.|+|+++..... +.. ++||+|++.++.+|+.. ++ +||. .+.++...++..
T Consensus 3 ~~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~---~~-----~cP~--t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKD---TG-----NDPI--TNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHH---HS-----BCTT--TCCBCCGGGCEE
T ss_pred eEEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHh---CC-----CCcC--CcCCCChhhcEE
Confidence 47899999988543 455 89999999999999974 21 4898 788888776654
No 76
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=95.64 E-value=0.0095 Score=39.80 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=31.2
Q ss_pred CCcccCCCCCcceeecCCCcceEec-CCcEEEeccccCC
Q 026541 196 MNWTRCPGCGNCIERKKGCRIMFCR-FIFLSLCLCIFSN 233 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~-C~~~fc~~c~~~~ 233 (237)
...+-||+|...+....+-..++|. |++.||+.|.-.-
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4556799999999888888889995 9999998777554
No 77
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=95.56 E-value=0.005 Score=40.61 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=34.5
Q ss_pred CCcccCCC--CCcceeecCCCcceEe------cCCcEEEeccccCCCc
Q 026541 196 MNWTRCPG--CGNCIERKKGCRIMFC------RFIFLSLCLCIFSNRY 235 (237)
Q Consensus 196 ~~~k~CP~--C~~~iek~~GCnhm~C------~C~~~fc~~c~~~~~~ 235 (237)
...+-||+ |+..|....+...+.| .|++.||+.|.-.-|.
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 34789998 9999999889999999 6999999999877664
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.72 E-value=0.024 Score=38.64 Aligned_cols=46 Identities=33% Similarity=0.730 Sum_probs=31.8
Q ss_pred cccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 40 TCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 40 ~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
-|.+|--++.. ...+.+|.|+||.+|...+..... =.||. |..++.
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~-------k~Cp~--C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGD-------KMCPG--CSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTC-------CBCTT--TCCBCS
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccC-------CCCcC--cCCeee
Confidence 57778766632 225789999999999988775332 14666 776654
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.34 E-value=0.18 Score=32.68 Aligned_cols=51 Identities=25% Similarity=0.623 Sum_probs=35.6
Q ss_pred CCCCccccccccCCCcccccccc-CCCCCcccHHHHHHHHHhhcccCCceeecCCC
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNN-NLCTHPFCQDCTVKYIEVKVRDNNTAKIECPG 89 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~-~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~ 89 (237)
+...+.|.+|.+.+... .|... ..=.|.||..|-+.+|+.+-.. ..+.||.
T Consensus 12 ~~a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~q~~~---~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKAQGAT---GEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHHHHSS---SCCCCTT
T ss_pred CCCeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHhcCCC---CcEECCC
Confidence 46789999999988543 22211 1138999999999999987544 4566663
No 80
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.00 E-value=0.18 Score=29.80 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=20.7
Q ss_pred CCcccCCCCCcceeecCCCcceEe-cCCcEE
Q 026541 196 MNWTRCPGCGNCIERKKGCRIMFC-RFIFLS 225 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C-~C~~~f 225 (237)
...+.||+|+..+.-...=+.+.| +||+.+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred EecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 456899999984433322278999 599754
No 81
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=89.25 E-value=0.37 Score=38.40 Aligned_cols=53 Identities=23% Similarity=0.546 Sum_probs=40.4
Q ss_pred CCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHH
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPF 99 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 99 (237)
+....|.||.+-..... .-..|+|.|...|+..|+.. .....||. |+..++.+
T Consensus 178 ~~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~------~~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQS------NAEPRCPH--CNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTT------CSSCBCTT--TCCBCCSC
T ss_pred CCCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHh------CCCCCCCC--CCCCCCCC
Confidence 45889999999886432 23359999999999999863 23458998 99888754
No 82
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=87.90 E-value=0.23 Score=30.01 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=21.2
Q ss_pred CcccCCCCCcceeecCCCcceEe-cCCcEE
Q 026541 197 NWTRCPGCGNCIERKKGCRIMFC-RFIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~f 225 (237)
..+.||+|+..+.-...-+.++| +|++.+
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 45899999985543344479999 599765
No 83
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=84.80 E-value=0.47 Score=31.20 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=25.9
Q ss_pred CCcccCCCCCcceeecCCCcceEec-CCcEEE
Q 026541 196 MNWTRCPGCGNCIERKKGCRIMFCR-FIFLSL 226 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~-C~~~fc 226 (237)
...-.||+|+....+..+=..+.|. |++.|-
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 3456999999999998888899995 998774
No 84
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=84.20 E-value=0.64 Score=27.18 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=21.8
Q ss_pred CcccCCCCCc-ceeecCCCcceEec-CCcEE
Q 026541 197 NWTRCPGCGN-CIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~-~iek~~GCnhm~C~-C~~~f 225 (237)
....||.|+. .+..+..=..+.|. ||.-|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3468999988 77777666779995 98643
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.79 E-value=0.92 Score=29.98 Aligned_cols=59 Identities=24% Similarity=0.478 Sum_probs=39.3
Q ss_pred ccCCccccCceeeeccccCCcccceeCcccchhhccccccCcCCCCCChhhhcccccchHHHHHHHhcCCcccCCCCCcc
Q 026541 128 SYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCFQCKLAWHAGYRCEESGNLRDRNDIAFGKLLEKMNWTRCPGCGNC 207 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~ 207 (237)
..|. -|+--+-..... ...+.|..|.+.+|.. |-+|. .+...+.||+|+++
T Consensus 17 qiCq--iCGD~VG~~~~G---e~FVAC~eC~FPvCrp----------CyEYE--------------rkeG~q~CpqCktr 67 (93)
T 1weo_A 17 QFCE--ICGDQIGLTVEG---DLFVACNECGFPACRP----------CYEYE--------------RREGTQNCPQCKTR 67 (93)
T ss_dssp CBCS--SSCCBCCBCSSS---SBCCSCSSSCCCCCHH----------HHHHH--------------HHTSCSSCTTTCCC
T ss_pred Cccc--cccCccccCCCC---CEEEeeeccCChhhHH----------HHHHH--------------HhccCccccccCCc
Confidence 4555 555544333322 4888999999999864 44432 35677999999999
Q ss_pred eeecCCCc
Q 026541 208 IERKKGCR 215 (237)
Q Consensus 208 iek~~GCn 215 (237)
+.+.-|.-
T Consensus 68 Ykr~kgsp 75 (93)
T 1weo_A 68 YKRLRGSP 75 (93)
T ss_dssp CCCCTTCC
T ss_pred cccccCCC
Confidence 98765553
No 86
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=83.20 E-value=0.77 Score=33.04 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=26.7
Q ss_pred CCCcccCCccccCceeeeccccCCcccceeCcccchhh
Q 026541 124 GFERSYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 124 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
.....+|| .|++.+........+...+.|+.|++..
T Consensus 21 ~~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 35578999 9999998876543345788998888754
No 87
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=81.64 E-value=1.1 Score=28.13 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=24.6
Q ss_pred CcccCCCCCcceeecCCCcceEec-CCcEE
Q 026541 197 NWTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~~f 225 (237)
..-.||.|+..++-+.+...+.|. ||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 456899999999998888999995 98665
No 88
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.53 E-value=8.3 Score=30.70 Aligned_cols=19 Identities=0% Similarity=-0.118 Sum_probs=14.9
Q ss_pred HHhccCChhHHHHHHHHHH
Q 026541 100 ACKHTIPSSLFLKWCDHLC 118 (237)
Q Consensus 100 ~i~~~l~~~~~~~y~~~~~ 118 (237)
.+..-++++++..|.++..
T Consensus 168 ~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 168 DLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHTSCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHH
Confidence 4555688999999998865
No 89
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=75.67 E-value=1.4 Score=31.50 Aligned_cols=47 Identities=21% Similarity=0.476 Sum_probs=34.5
Q ss_pred ecCCCCcCC---CCCCHHHHhccCChhHHHHHHHHHHHHhhcCCCcccCCccccCceeeecc
Q 026541 85 IECPGLHCE---QFLDPFACKHTIPSSLFLKWCDHLCEDYVLGFERSYCPNRNCMAVMVNEC 143 (237)
Q Consensus 85 i~CP~~~C~---~~i~~~~i~~~l~~~~~~~y~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 143 (237)
+.||. |+ ..+....++.+|.++.++ +...++..|++++|.-++...+
T Consensus 2 ~~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~~~ 51 (130)
T 2hu9_A 2 MRCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFNEQ 51 (130)
T ss_dssp CBCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEECSS
T ss_pred CcCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEECCC
Confidence 46998 88 447788888887776543 3335678999999998887543
No 90
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=75.18 E-value=1.3 Score=27.52 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=27.6
Q ss_pred CCCCccccccccCCCccccccccCCC-CCcccHHHHHHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLC-THPFCQDCTVKYIE 74 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C-~H~~C~~Cl~~~~~ 74 (237)
+.+...|.||.++.. + .-+.| +..||..||+..-.
T Consensus 5 ~ee~pWC~ICneDAt----l-rC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT----L-RCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCCSSCTTTCSCCC----E-EETTTTSEEECSSHHHHHTT
T ss_pred CcCCCeeEEeCCCCe----E-EecCCCCceehHHHHHHHcc
Confidence 467889999999862 2 46788 88999999997653
No 91
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=75.09 E-value=5.6 Score=26.23 Aligned_cols=53 Identities=25% Similarity=0.572 Sum_probs=37.3
Q ss_pred CCCccccccccCCCcc---ccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCC
Q 026541 36 DGTFTCDICIEPMSVN---NKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~---~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 97 (237)
.....|.||-+++... +.|.....|+-.+|+.|+..-. ++| .-.||. |+..+.
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----keG---~q~Cpq--CktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----REG---TQNCPQ--CKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----HTS---CSSCTT--TCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----hcc---Cccccc--cCCccc
Confidence 3567999999986432 3555566789999999976544 342 347888 886664
No 92
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=73.66 E-value=2.7 Score=28.23 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=20.9
Q ss_pred ccCCCCCcceeecCCCcceEec-CCcEE
Q 026541 199 TRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~~f 225 (237)
..||.|+..++.++| +..|. |+..|
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f 58 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFI 58 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEE
T ss_pred ccCccCCCcceecCC--EEECccccchh
Confidence 799999999999988 66794 87655
No 93
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=72.01 E-value=2 Score=27.94 Aligned_cols=38 Identities=24% Similarity=0.598 Sum_probs=27.0
Q ss_pred cCCCCccccccccCCCccccccccCCCCCcccHHHHHH
Q 026541 34 DIDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVK 71 (237)
Q Consensus 34 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~ 71 (237)
.+.....|.+|...|.....-..-..||.+||..|...
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34567789999999854322223557899999999654
No 94
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=71.81 E-value=2.6 Score=29.28 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=25.0
Q ss_pred cccCCccccCceeeeccccCCcccceeCcccchhh
Q 026541 127 RSYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
..+|| .|++.+........+...+.|+.|++.+
T Consensus 4 m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 46899 9999998876533345789999998755
No 95
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=71.20 E-value=0.99 Score=30.18 Aligned_cols=48 Identities=25% Similarity=0.468 Sum_probs=35.0
Q ss_pred CCCccccccccCCCccccccccCCC-CCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHH
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLC-THPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPF 99 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C-~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 99 (237)
...+.|..|+-... .+..| .|.+|..||...+.. . =+||. |+.+++..
T Consensus 26 ~G~~nCKsCWf~~k------~LV~C~dHYLCl~CLtlmL~~--S------drCpI--C~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENK------GLVECNNHYLCLNCLTLLLSV--S------NRCPI--CKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCS------SEEECSSCEEEHHHHHHTCSS--S------SEETT--TTEECCCC
T ss_pred cCcccChhhccccC------CeeeecchhhHHHHHHHHHhh--c------cCCcc--cCCcCCcc
Confidence 67789999996652 24556 799999998876542 2 27888 99777643
No 96
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=70.10 E-value=3.2 Score=26.98 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=8.1
Q ss_pred cCCCCCcceeecCC
Q 026541 200 RCPGCGNCIERKKG 213 (237)
Q Consensus 200 ~CP~C~~~iek~~G 213 (237)
.||.|+..|++++|
T Consensus 4 ~CP~C~~~l~~~~~ 17 (81)
T 2jrp_A 4 TCPVCHHALERNGD 17 (81)
T ss_dssp CCSSSCSCCEECSS
T ss_pred CCCCCCCccccCCC
Confidence 46666666655555
No 97
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=69.94 E-value=2.5 Score=27.65 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=26.7
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVK 71 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~ 71 (237)
+.....|.+|...|.....-..-..||.+||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4567789999999865432223567899999999654
No 98
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=67.71 E-value=2.9 Score=29.50 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=25.3
Q ss_pred CcccCCccccCceeeeccccCCcccceeCcccchhh
Q 026541 126 ERSYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 126 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
...+|| .|++++............+.|+.|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 357899 9999998775432335789999998755
No 99
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=67.42 E-value=4.2 Score=28.20 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=21.8
Q ss_pred cccCCCCCcceeec----CCCcceEec-CCcEE
Q 026541 198 WTRCPGCGNCIERK----KGCRIMFCR-FIFLS 225 (237)
Q Consensus 198 ~k~CP~C~~~iek~----~GCnhm~C~-C~~~f 225 (237)
.+-||.|+.++.-. .|.+.+.|+ |+|.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 46899999986543 368899995 99876
No 100
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=67.34 E-value=4.7 Score=25.26 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=21.7
Q ss_pred cccCCCCCcceeecCCCcceEec-CCcEE
Q 026541 198 WTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~~f 225 (237)
.-.||.|+..++-+.+=..+.|. ||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 35899999988877665678895 88665
No 101
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=67.14 E-value=3.5 Score=25.49 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=24.8
Q ss_pred CCcccCCCCCcceeecCCCcceEecCCcEEEeccccC
Q 026541 196 MNWTRCPGCGNCIERKKGCRIMFCRFIFLSLCLCIFS 232 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~C~~~fc~~c~~~ 232 (237)
....+|..|+..+... -+.|+|+..||=.=++.
T Consensus 13 ~~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HRy~ 45 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLT----GFMCRCGTTFCGSHRYP 45 (64)
T ss_dssp SSCCCCTTTCCCCCTT----CEECSSSCEECTTTCST
T ss_pred CcCCcChhhCCccCcc----CEEeecCCEeccccCCc
Confidence 3457899999988766 48899999998654443
No 102
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=67.12 E-value=5.1 Score=25.24 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=22.8
Q ss_pred CcccCCCCCcceeecCCCcceEec-CCcEE
Q 026541 197 NWTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~~f 225 (237)
..-.||.|+..++-+.+=..+.|. ||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 456899999998887665678995 98665
No 103
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=66.48 E-value=3.3 Score=29.72 Aligned_cols=32 Identities=16% Similarity=0.464 Sum_probs=23.1
Q ss_pred hcCCcccCCCCCcceeec----CCCcceEec-CCcEE
Q 026541 194 EKMNWTRCPGCGNCIERK----KGCRIMFCR-FIFLS 225 (237)
Q Consensus 194 ~~~~~k~CP~C~~~iek~----~GCnhm~C~-C~~~f 225 (237)
.....+-||.|+.++.-. .|.+.+.|+ |+|.+
T Consensus 20 ~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 20 HMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp --CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 345679999999986432 368889995 99854
No 104
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=65.79 E-value=3.8 Score=26.08 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=24.5
Q ss_pred CcccCCCCCcceeecCCCcceEecCCcEEEeccccC
Q 026541 197 NWTRCPGCGNCIERKKGCRIMFCRFIFLSLCLCIFS 232 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~C~~~fc~~c~~~ 232 (237)
...+|..|+..+...+ +.|+|+..||=.=++.
T Consensus 24 ~~nRC~~CrKkvgL~g----f~CrCg~~FCs~HRy~ 55 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTG----FDCRCGNLFCGLHRYS 55 (74)
T ss_dssp CTTBCSSSCCBCGGGC----EECTTSCEECSSSCST
T ss_pred cCCcChhhCCcccccC----eecCCCCEechhcCCC
Confidence 3468999999988763 8999999998654443
No 105
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=65.37 E-value=5.5 Score=28.55 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=24.5
Q ss_pred CCCCccccccccCCCcc-ccccccCCCCCcccHHH
Q 026541 35 IDGTFTCDICIEPMSVN-NKFKNNNLCTHPFCQDC 68 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~-~~~~~~~~C~H~~C~~C 68 (237)
......|.+|..++... ..-..-..|.|.+|..|
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred cCCCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 46788999999998422 21224567899999998
No 106
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=65.20 E-value=5.7 Score=24.92 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=21.5
Q ss_pred cccCCCCCcceeecCCCcceEec-CCcEE
Q 026541 198 WTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~~f 225 (237)
.-.||.|+..++-..+=..+.|. ||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45899999988877665678895 88655
No 107
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.23 E-value=3.3 Score=26.99 Aligned_cols=36 Identities=25% Similarity=0.528 Sum_probs=25.7
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTV 70 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~ 70 (237)
+.....|.+|...|........-..||.+||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 456678999999985432222346789999999944
No 108
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=64.00 E-value=4.4 Score=28.50 Aligned_cols=30 Identities=17% Similarity=0.482 Sum_probs=22.9
Q ss_pred CcccCCCCCcceeec----CCCcceEec-CCcEEE
Q 026541 197 NWTRCPGCGNCIERK----KGCRIMFCR-FIFLSL 226 (237)
Q Consensus 197 ~~k~CP~C~~~iek~----~GCnhm~C~-C~~~fc 226 (237)
..+-||.|+.++.-. .+-+.+.|+ |+|.+-
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 457899999976633 668899995 998663
No 109
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=63.70 E-value=2.7 Score=26.52 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=16.0
Q ss_pred ccCCCCCcceeecCCCcceEec-CCc
Q 026541 199 TRCPGCGNCIERKKGCRIMFCR-FIF 223 (237)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (237)
-.|+.|+..++...+ +-+.|+ ||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 468888887766544 556775 775
No 110
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=62.79 E-value=3.1 Score=27.57 Aligned_cols=37 Identities=16% Similarity=0.416 Sum_probs=26.1
Q ss_pred CCCccccccccCCCccccccccCCCCCcccHHHHHHH
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKY 72 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~ 72 (237)
.....|.+|...|........-..||.+||..|....
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 3456799999988654322235679999999996543
No 111
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=61.73 E-value=4.7 Score=24.88 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=23.8
Q ss_pred CcccCCCCCcceeecCCCcceEecCCcEEEeccccC
Q 026541 197 NWTRCPGCGNCIERKKGCRIMFCRFIFLSLCLCIFS 232 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~C~~~fc~~c~~~ 232 (237)
...+|..|+..+... -+.|+||..||=.=++.
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HR~~ 45 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKCKCGSTFCGSHRYP 45 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEECTTSCEECSSSCSS
T ss_pred cCCcChhhCCccccc----CeEeecCCEecccCCCc
Confidence 446899999987655 48899999998554443
No 112
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.64 E-value=3.2 Score=29.35 Aligned_cols=36 Identities=25% Similarity=0.589 Sum_probs=25.5
Q ss_pred CCCccccccccCCCccccccccCCCCCcccHHHHHH
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVK 71 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~ 71 (237)
.....|.+|...|.....-..-..||++||..|...
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 445689999998864322223567999999999654
No 113
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=58.86 E-value=7.3 Score=21.28 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.2
Q ss_pred ccceeCcccchhhcccccc-CcCCCCC
Q 026541 149 VKKAQCPKCKQWFCFQCKL-AWHAGYR 174 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 174 (237)
...+.|..++..+|..|.. ..|.+++
T Consensus 12 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 12 RLKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp SCCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eeeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 5788999999999999998 6787764
No 114
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=58.78 E-value=4.8 Score=29.50 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=23.3
Q ss_pred CcccCCC--CCcceeecCCCcceEe-cCCcEEEe
Q 026541 197 NWTRCPG--CGNCIERKKGCRIMFC-RFIFLSLC 227 (237)
Q Consensus 197 ~~k~CP~--C~~~iek~~GCnhm~C-~C~~~fc~ 227 (237)
.-+.||+ |+.-+.-..-=+..+| +||+.|+.
T Consensus 117 ~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp CSCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred CcCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 4489999 9987766544478999 69987654
No 115
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=58.69 E-value=6.8 Score=21.10 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=18.4
Q ss_pred cCCCCCcc---eeecCCCcceEec-CCcEE
Q 026541 200 RCPGCGNC---IERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 200 ~CP~C~~~---iek~~GCnhm~C~-C~~~f 225 (237)
.||.|+.+ +.+..+=-.+.|. ||+..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 58899886 5555666678885 98643
No 116
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=58.13 E-value=5.5 Score=25.15 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=23.6
Q ss_pred ccccccccCCCccccccccCCCCCcccHHHHHH
Q 026541 39 FTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVK 71 (237)
Q Consensus 39 ~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~ 71 (237)
..|.+|...|........-..||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 489999998854322223457899999999643
No 117
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=57.18 E-value=9.3 Score=23.80 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=22.2
Q ss_pred CcccCCCCCcceeecCCCcceEec-CCcEE
Q 026541 197 NWTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~~f 225 (237)
..-.||.|+.+++-+..=..+.|. |+..|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 456899999998877655678895 88655
No 118
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=56.82 E-value=4.8 Score=29.48 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=23.1
Q ss_pred cccCCccccCceeeeccccCCcccceeCcccchhhcc
Q 026541 127 RSYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
+..||++.|+..+.-..- .+...|..|+..+++
T Consensus 118 ~~~c~~~~cg~g~fma~h----~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANH----KDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEEC----SSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEeccc----CCCcccCCCceEEEe
Confidence 478998889874433332 367889989887764
No 119
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=55.95 E-value=6.8 Score=24.92 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=24.0
Q ss_pred CCcccCCCCCcceeecCCCcceEecCCcEEEecccc
Q 026541 196 MNWTRCPGCGNCIERKKGCRIMFCRFIFLSLCLCIF 231 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~C~~~fc~~c~~ 231 (237)
....+|..|+..+... -+.|+|+..||=.=++
T Consensus 23 ~~~~RC~~C~kkvgL~----~f~CrCg~~FCs~HRy 54 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT----GFKCRCGSTFCGTHRY 54 (74)
T ss_dssp CCCCBCSSSCCBCTTT----CEECTTSCEECTTTCS
T ss_pred ccCccchhhcCccccc----ceEeccCCEeccccCC
Confidence 4557899999888776 4889999999854333
No 120
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=55.15 E-value=5.9 Score=25.86 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=23.6
Q ss_pred cccCCccccCceeeeccccCCcccceeCcccchhhcc
Q 026541 127 RSYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
...|| .|+.-...... .-.+.|+.|+..|-.
T Consensus 27 ~y~Cp--~CG~~~v~r~a----tGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 27 DHACP--NCGEDRVDRQG----TGIWQCSYCDYKFTG 57 (83)
T ss_dssp CEECS--SSCCEEEEEEE----TTEEEETTTCCEEEC
T ss_pred cCcCC--CCCCcceeccC----CCeEECCCCCCEecC
Confidence 47899 88886666665 568899989887754
No 121
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=52.52 E-value=12 Score=22.32 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=21.2
Q ss_pred CcccCCCCCcceeecCCCcceEec---CCcEE
Q 026541 197 NWTRCPGCGNCIERKKGCRIMFCR---FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~---C~~~f 225 (237)
..-.||.|+..++..+ ..+.|. |+..|
T Consensus 9 ~iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 4468999999988777 778886 87655
No 122
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=52.32 E-value=6.5 Score=27.61 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=24.4
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYI 73 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~ 73 (237)
+.....|..|...|........-..||.+||..|....+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 445578999999885543222356899999999965443
No 123
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=51.59 E-value=7.1 Score=25.70 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=24.9
Q ss_pred CCCccccccccCCCccccccccCCCCCcccHHHHHH
Q 026541 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVK 71 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~ 71 (237)
.....|.+|...|.....-..-..||.+||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 345589999998854422223567899999999543
No 124
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=51.05 E-value=10 Score=24.81 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=22.4
Q ss_pred CCcccCCCCCcceeecCCCcceEecCCcEEEec
Q 026541 196 MNWTRCPGCGNCIERKKGCRIMFCRFIFLSLCL 228 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~C~~~fc~~ 228 (237)
....+|..|+..+-.. +-+.|+||..||=.
T Consensus 23 ~~~~rC~~C~kkvgl~---~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA---TSFECRCGNNFCAS 52 (85)
T ss_dssp CCCCBCSSSCCBCSSS---SCEECTTCCEECTT
T ss_pred ccCccchhhCCeeccc---CCeEcCCCCEeccc
Confidence 3457999999887654 34889999888843
No 125
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=50.28 E-value=15 Score=22.00 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=18.0
Q ss_pred CcccCCCCCc-ceeecCCCcceEec-CCcE
Q 026541 197 NWTRCPGCGN-CIERKKGCRIMFCR-FIFL 224 (237)
Q Consensus 197 ~~k~CP~C~~-~iek~~GCnhm~C~-C~~~ 224 (237)
....||.|+. .|..+.-=..+.|. ||.-
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 3357999976 45555444568884 8853
No 126
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=47.97 E-value=4.2 Score=23.33 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=23.1
Q ss_pred ccceeCcccchhhccccccCcCCCCCC
Q 026541 149 VKKAQCPKCKQWFCFQCKLAWHAGYRC 175 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~~~H~~~~C 175 (237)
...+.|..|+..+|..|....|.++.-
T Consensus 16 ~l~lfC~~~~~~iC~~C~~~~H~~H~~ 42 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQLNAHKDHQY 42 (50)
T ss_dssp BCCEEETTTTEEECHHHHHTTTTTCCE
T ss_pred CEEEEeCCCCEEEecccCCCcCCCCce
Confidence 578899999999999998877887753
No 127
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=47.85 E-value=8.5 Score=30.94 Aligned_cols=25 Identities=36% Similarity=0.784 Sum_probs=21.0
Q ss_pred cccCCCCCcceeec--CCCcceEec-CC
Q 026541 198 WTRCPGCGNCIERK--KGCRIMFCR-FI 222 (237)
Q Consensus 198 ~k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (237)
.++||.|+.+|++. +|=.-.+|. |.
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 37999999999986 788888884 86
No 128
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=47.41 E-value=7.7 Score=31.29 Aligned_cols=24 Identities=29% Similarity=0.703 Sum_probs=20.6
Q ss_pred ccCCCCCcceeec--CCCcceEec-CC
Q 026541 199 TRCPGCGNCIERK--KGCRIMFCR-FI 222 (237)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (237)
++||.|+.+|++. +|=.-.+|. |.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 7999999999986 788888884 86
No 129
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.28 E-value=8.8 Score=23.61 Aligned_cols=39 Identities=21% Similarity=0.590 Sum_probs=28.1
Q ss_pred ccCCccccCceeeeccccCCcccceeCcccchhhccccccCcCCCCCChh
Q 026541 128 SYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCFQCKLAWHAGYRCEE 177 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~ 177 (237)
..|...+|.... ..-+.|..|+..||...+.+ ..+.|..
T Consensus 13 ~~Cs~~~Ck~~~---------ll~f~C~~C~~~FC~~HR~~--e~H~C~~ 51 (63)
T 1x4v_A 13 NKCERAGCRQRE---------MMKLTCERCSRNFCIKHRHP--LDHDCSG 51 (63)
T ss_dssp CCCCSTTCCCCC---------SSCCBCSSSCCBCCHHHHST--TSSCCCS
T ss_pred CCCCccCCCCCC---------ccceECCCCCcccCcccCCc--cCCcCCC
Confidence 578877887652 24578999999999988864 2345653
No 130
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=47.08 E-value=13 Score=24.39 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=23.7
Q ss_pred CcccCCCCCcc------eeecCCCcceEec-CCcEEEe
Q 026541 197 NWTRCPGCGNC------IERKKGCRIMFCR-FIFLSLC 227 (237)
Q Consensus 197 ~~k~CP~C~~~------iek~~GCnhm~C~-C~~~fc~ 227 (237)
..-.||.|+.. |.|..|=.++.|+ ||..|-.
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 44689999875 4456788899995 9977654
No 131
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=47.06 E-value=7.8 Score=31.31 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=20.1
Q ss_pred ccCCCCCcceeec--CCCcceEec-CC
Q 026541 199 TRCPGCGNCIERK--KGCRIMFCR-FI 222 (237)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (237)
++||.|+.+|++. +|=...+|. |.
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 7999999999985 788888884 75
No 132
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=46.74 E-value=7.4 Score=29.65 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=20.6
Q ss_pred CcccCCCCCcceee-cCCCcceEe-cCCcEEEe
Q 026541 197 NWTRCPGCGNCIER-KKGCRIMFC-RFIFLSLC 227 (237)
Q Consensus 197 ~~k~CP~C~~~iek-~~GCnhm~C-~C~~~fc~ 227 (237)
..+.||+|+..+.- ...+.| +| +|++.|.+
T Consensus 112 ~~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp CSEECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred ccccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 34899999976443 445544 99 69977653
No 133
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=46.18 E-value=8.2 Score=31.08 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.2
Q ss_pred ccCCCCCcceeec--CCCcceEec-CC
Q 026541 199 TRCPGCGNCIERK--KGCRIMFCR-FI 222 (237)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (237)
++||.|+.+|++. +|=.-.+|. |.
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 7999999999986 788888884 75
No 134
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=46.13 E-value=9.4 Score=23.48 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=12.2
Q ss_pred ccCCCCCcceeecCCCcceEec-CCc
Q 026541 199 TRCPGCGNCIERKKGCRIMFCR-FIF 223 (237)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (237)
=.|..|+..++...+ .-|.|+ ||+
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~~CG~ 46 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCRECGH 46 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCSSSCC
T ss_pred EECCCCCCeeecCCC-CceECCCCCc
Confidence 355555555554433 445553 554
No 135
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=45.78 E-value=8.4 Score=30.89 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=20.2
Q ss_pred ccCCCCCcceeec--CCCcceEec-CC
Q 026541 199 TRCPGCGNCIERK--KGCRIMFCR-FI 222 (237)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (237)
++||.|+.+|++. +|=.-.+|. |.
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 6899999999986 788888884 75
No 136
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=43.57 E-value=11 Score=25.37 Aligned_cols=17 Identities=18% Similarity=0.634 Sum_probs=15.0
Q ss_pred cccHHHHHHHHHhhccc
Q 026541 63 PFCQDCTVKYIEVKVRD 79 (237)
Q Consensus 63 ~~C~~Cl~~~~~~~i~~ 79 (237)
-||+.||.+|+..+-..
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999988766
No 137
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=42.88 E-value=11 Score=25.24 Aligned_cols=17 Identities=24% Similarity=0.788 Sum_probs=14.7
Q ss_pred cccHHHHHHHHHhhccc
Q 026541 63 PFCQDCTVKYIEVKVRD 79 (237)
Q Consensus 63 ~~C~~Cl~~~~~~~i~~ 79 (237)
-||+.||.+|+..+-..
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999987665
No 138
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=41.89 E-value=17 Score=22.38 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=24.7
Q ss_pred CCCCccccccccCCCccccccccC-CCCCcccHHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNN-LCTHPFCQDCTV 70 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~-~C~H~~C~~Cl~ 70 (237)
+.+...|.+|..++.+.+.++.-- .|.--|...|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 466789999999886554444445 788889999986
No 139
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=41.01 E-value=15 Score=27.51 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.8
Q ss_pred ccCCCCCcceeecCCCcceEec-CCc
Q 026541 199 TRCPGCGNCIERKKGCRIMFCR-FIF 223 (237)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (237)
-.|+.|+.+..+.+ ++|.|. ||.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCC
T ss_pred ecccccCCceEECC--CEEECCCCCC
Confidence 58999999998876 999995 984
No 140
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=40.81 E-value=8.7 Score=24.00 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=13.0
Q ss_pred cCCcccCCCCCcceee
Q 026541 195 KMNWTRCPGCGNCIER 210 (237)
Q Consensus 195 ~~~~k~CP~C~~~iek 210 (237)
....+.||.|+.++.-
T Consensus 6 ~~~~~~CP~Cgkp~~W 21 (68)
T 1lv3_A 6 ETITVNCPTCGKTVVW 21 (68)
T ss_dssp CCCEEECTTTCCEEEC
T ss_pred CCCcCcCCCCCCcccc
Confidence 4567899999999973
No 141
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=40.57 E-value=14 Score=21.18 Aligned_cols=30 Identities=20% Similarity=0.467 Sum_probs=20.1
Q ss_pred cCCccccCceeeeccccCCcccceeCcccchhhc
Q 026541 129 YCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFC 162 (237)
Q Consensus 129 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C 162 (237)
.|- .|+.-+...+. +..+.++||.||+.+=
T Consensus 5 ~C~--rCg~~fs~~el--~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 5 RCG--KCWKTFTDEQL--KVLPGVRCPYCGYKII 34 (48)
T ss_dssp CCC--CTTTTCCCCCS--CCCSSSCCTTTCCSCE
T ss_pred Eee--ccCCCccHHHH--hhCCCcccCccCcEEE
Confidence 455 67776666555 3367888988887653
No 142
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=40.28 E-value=19 Score=23.59 Aligned_cols=40 Identities=25% Similarity=0.644 Sum_probs=28.8
Q ss_pred cccCCccccCceeeeccccCCcccceeCcccchhhccccccCcCCCCCChh
Q 026541 127 RSYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCFQCKLAWHAGYRCEE 177 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~ 177 (237)
...|...+|.... ..-+.|..|+..||...+.+. .+.|..
T Consensus 25 ~~~C~~~~Ck~~~---------~l~f~C~~C~~~FC~~HR~~e--~H~C~~ 64 (86)
T 1wfe_A 25 SYSCSFKGCTDVE---------LVAVICPYCEKNFCLRHRHQS--DHDCEK 64 (86)
T ss_dssp CEECCSTTCCCEE---------SSCEECTTTCCEECGGGCSTG--GGTCSS
T ss_pred CCCCCCcCCCCCC---------ccceECCCCCcccccccCCcc--CCCCCC
Confidence 3578888888763 256789999999999988642 235553
No 143
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=39.57 E-value=6.4 Score=25.44 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=16.9
Q ss_pred ecCCCCcCCCCCCHHH-HhccCChhH
Q 026541 85 IECPGLHCEQFLDPFA-CKHTIPSSL 109 (237)
Q Consensus 85 i~CP~~~C~~~i~~~~-i~~~l~~~~ 109 (237)
-+||. |+.++..++ |.+.|..+.
T Consensus 9 ~~~Pl--CG~~L~W~eLIeQML~~en 32 (95)
T 2k5c_A 9 AKCPI--CGSPLKWEELIEEMLIIEN 32 (95)
T ss_dssp EECSS--SCCEECHHHHHHHSTTCST
T ss_pred ccCCc--CCCccCHHHHHHHHHhhcc
Confidence 58999 999999765 556665543
No 144
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=39.31 E-value=9.1 Score=22.17 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=22.9
Q ss_pred ccceeCcccchhhcccccc-CcCCCCCC
Q 026541 149 VKKAQCPKCKQWFCFQCKL-AWHAGYRC 175 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C 175 (237)
...+.|..|+..+|..|.. ..|.+++-
T Consensus 17 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 44 (53)
T 2did_A 17 ALSLFCYEDQEAVCLICAISHTHRAHTV 44 (53)
T ss_dssp BCCEEESSSCSEECHHHHTSSTTTTSCE
T ss_pred eeeEEeCCCCeEEeccccCCCCCCCCcE
Confidence 5788999999999999987 67887753
No 145
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=38.13 E-value=6.5 Score=23.86 Aligned_cols=35 Identities=23% Similarity=0.721 Sum_probs=25.1
Q ss_pred cCCccccCceeeeccccCCcccceeCcccchhhccccccCcCCC
Q 026541 129 YCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCFQCKLAWHAG 172 (237)
Q Consensus 129 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~ 172 (237)
.|- +|...+.. .....|+.|+..||..|-.-.|..
T Consensus 17 ~C~--~C~~~~~~-------~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCY--GCQGELKD-------QHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EET--TTTEECTT-------SEEECCTTTTCCBCHHHHHTTTTT
T ss_pred ccc--ccCcccCC-------CccEECCccCcCcccchhHHHHhh
Confidence 465 67666521 124789999999999998877753
No 146
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=36.92 E-value=16 Score=26.56 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=19.8
Q ss_pred CcccCCcccc-C------ceeeeccccCCcccceeCcccchhh
Q 026541 126 ERSYCPNRNC-M------AVMVNECEGIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 126 ~~~~Cp~~~C-~------~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
+.+.||+|+| . ..+...+. .....+|..|+..+
T Consensus 104 gvl~C~Np~CITn~E~v~s~F~v~~~---~~~~lrC~YCe~~~ 143 (149)
T 2yww_A 104 GTLKCTNPNCITNKEKVRGKFKIESK---NPLKIRCYYCEKFL 143 (149)
T ss_dssp SSSCCSCTTSGGGTSCCCCEEEEEEE---TTEEEEETTTCCBC
T ss_pred CeEEcCCCCCCcCCcccccEEEEEeC---CCCEEEeeCCCcCh
Confidence 3578999999 2 22222111 13458898888764
No 147
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=35.23 E-value=23 Score=23.07 Aligned_cols=31 Identities=19% Similarity=0.569 Sum_probs=22.4
Q ss_pred ccCCccccCceeeeccccCCcccceeCcccchhhcc
Q 026541 128 SYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
+.|| +|..+-..=.. ....+.|..|+...|.
T Consensus 37 VkCp--~C~~~~~VFSh---A~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFSH---SQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECT--TTCCEEEEETT---CSSCCCCSSSCCCCSC
T ss_pred EECC--CCCCeeEEEec---CCcEEEccCCCCEeec
Confidence 7899 89875543222 2578999999998874
No 148
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.67 E-value=12 Score=22.40 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.6
Q ss_pred ccceeCcccchhhcccccc-CcCCCCC
Q 026541 149 VKKAQCPKCKQWFCFQCKL-AWHAGYR 174 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 174 (237)
...++|..++..+|..|.. ..|.+++
T Consensus 23 ~L~lfC~~d~~~iC~~C~~s~eH~~H~ 49 (59)
T 2yrg_A 23 KLLLFCQEDGKVICWLCERSQEHRGHH 49 (59)
T ss_dssp BCCEEETTTCSEECHHHHTSTTTTTCC
T ss_pred eeeeecCCCCcEEecccCCCCcCCCCc
Confidence 5788999999999999997 6788775
No 149
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=34.59 E-value=13 Score=26.31 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=21.1
Q ss_pred CCcccCCccccCceeeeccccCCcccceeCcccchhh
Q 026541 125 FERSYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 125 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
..+-.|| .|..-+.+++. ..+.||.|+..+
T Consensus 25 ~~lP~CP--~C~seytYeDg-----~l~vCPeC~hEW 54 (138)
T 2akl_A 25 STLPPCP--QCNSEYTYEDG-----ALLVCPECAHEW 54 (138)
T ss_dssp CCSCCCT--TTCCCCCEECS-----SSEEETTTTEEE
T ss_pred ccCCCCC--CCCCcceEecC-----CeEECCcccccc
Confidence 3456788 88887777765 567787777654
No 150
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=34.45 E-value=1e+02 Score=22.02 Aligned_cols=51 Identities=22% Similarity=0.538 Sum_probs=33.7
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHH----hhc--ccCCceeecCCCCcCCC
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIE----VKV--RDNNTAKIECPGLHCEQ 94 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~----~~i--~~~~~~~i~CP~~~C~~ 94 (237)
+.....|.+|.+-- + .+.--.|-..||..|+...+. ..+ ..+ +-.||. |..
T Consensus 60 Dg~~d~C~vC~~GG---~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~---~W~C~~--C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG---N-LICCDFCHNAFCKKCILRNLGRKELSTIMDENN---QWYCYI--CHP 116 (142)
T ss_dssp TSCBCSCSSSCCCS---S-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT---CCCCTT--TCC
T ss_pred CCCCCeecccCCCC---c-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC---CCEeec--ccC
Confidence 45678899998643 2 223457899999999997763 222 233 346887 764
No 151
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=34.27 E-value=9.2 Score=21.63 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=21.7
Q ss_pred ccceeCcccchhhcccccc-CcCCCCC
Q 026541 149 VKKAQCPKCKQWFCFQCKL-AWHAGYR 174 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 174 (237)
...++|..|+..+|..|.. ..|.+++
T Consensus 16 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 16 KINIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp BCCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred cccEEcCCCCeeEcccccCCCcCCCCc
Confidence 5778999999999999984 5688775
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.03 E-value=13 Score=28.74 Aligned_cols=34 Identities=26% Similarity=0.604 Sum_probs=24.3
Q ss_pred CccccccccCCCccccccccCCCCCcccHHHHHH
Q 026541 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVK 71 (237)
Q Consensus 38 ~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~ 71 (237)
...|.+|...|.....-..-..||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999988854322223567899999999654
No 153
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=34.00 E-value=9.9 Score=23.64 Aligned_cols=27 Identities=15% Similarity=0.389 Sum_probs=23.4
Q ss_pred ccceeCcccchhhccccccCcCCCCCC
Q 026541 149 VKKAQCPKCKQWFCFQCKLAWHAGYRC 175 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~~~H~~~~C 175 (237)
...++|..|+..+|..|....|.+++-
T Consensus 27 ~l~lfC~~d~~~iC~~C~~~~H~~H~~ 53 (72)
T 2csv_A 27 TMELFCQTDQTCICYLCMFQEHKNHST 53 (72)
T ss_dssp BCCEEESSSCCEECHHHHHTTTSSSCE
T ss_pred ceEEEeCCCCeEEccccCCCCCCCCCE
Confidence 578899999999999998878888764
No 154
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=33.65 E-value=50 Score=22.69 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=28.7
Q ss_pred CChhHHHHHHHHHHHHh-hcC---------CCcccCCccccCceeeeccccCCcccce-eCcccchh
Q 026541 105 IPSSLFLKWCDHLCEDY-VLG---------FERSYCPNRNCMAVMVNECEGIGRVKKA-QCPKCKQW 160 (237)
Q Consensus 105 l~~~~~~~y~~~~~~~~-~~~---------~~~~~Cp~~~C~~~~~~~~~~~~~~~~~-~C~~C~~~ 160 (237)
+.++.++...+.+.+.. +.. +...+|. +|+..+.... ... .||.|+..
T Consensus 41 v~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~--~CG~~~e~~~------~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 41 MDKSLFVSAFETFREESLVCKDAILDIVDEKVELECK--DCSHVFKPNA------LDYGVCEKCHSK 99 (119)
T ss_dssp CCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECS--SSSCEECSCC------STTCCCSSSSSC
T ss_pred ccHHHHHHHHHHHHhCChhhcCcEEEEEeccceEEcC--CCCCEEeCCC------CCCCcCccccCC
Confidence 34566666555555554 321 4457888 8888776532 345 68777653
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.59 E-value=16 Score=28.50 Aligned_cols=35 Identities=26% Similarity=0.622 Sum_probs=24.8
Q ss_pred CccccccccCCCccccccccCCCCCcccHHHHHHH
Q 026541 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKY 72 (237)
Q Consensus 38 ~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~ 72 (237)
...|.+|...|........-..||..||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 34899999888654222235679999999996543
No 156
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.36 E-value=24 Score=22.36 Aligned_cols=61 Identities=26% Similarity=0.477 Sum_probs=37.6
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHHHhhcccCCceeecCCCCcCCCCCCHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYIEVKVRDNNTAKIECPGLHCEQFLDPFAC 101 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i 101 (237)
+.....| ||..+......++.--.|..-|...|+.-...... ......||. |.....+..+
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~---~~~~~~C~~--C~~~~~~~~~ 69 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV---DIDIYHCPD--CEAVFGPSIM 69 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHT---TCSBBCCTT--TTTTSCSCBC
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccccc---CCCeEECCC--cccccCCCce
Confidence 4567778 89887643334444557888899999864332221 234689998 8765444333
No 157
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=32.77 E-value=14 Score=27.89 Aligned_cols=75 Identities=9% Similarity=0.167 Sum_probs=42.1
Q ss_pred ccccccccCCCcccc---ccccCCCCCcccHHHHHHHH--Hhhccc-CCceeecCCCCcCCCCCCHHHHhccCChhHHHH
Q 026541 39 FTCDICIEPMSVNNK---FKNNNLCTHPFCQDCTVKYI--EVKVRD-NNTAKIECPGLHCEQFLDPFACKHTIPSSLFLK 112 (237)
Q Consensus 39 ~~C~iC~~~~~~~~~---~~~~~~C~H~~C~~Cl~~~~--~~~i~~-~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~~ 112 (237)
..|+||...+.+.+. ++.--.|..-|...|+.-.- ...+.+ .......||. |...-+. ..+..|..++.+.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~--C~~~~~~-~~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN--CTERHPA-EWRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT--TCCSSSC-HHHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC--CCCCCCH-HHHHHHHHHHHHH
Confidence 469999988865542 44455788888888875221 111211 0113579998 9855443 2444444444444
Q ss_pred HHHH
Q 026541 113 WCDH 116 (237)
Q Consensus 113 y~~~ 116 (237)
+.++
T Consensus 80 l~~v 83 (183)
T 3lqh_A 80 LKQV 83 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 158
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=32.60 E-value=30 Score=21.98 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=30.1
Q ss_pred ccCCccccCceeeeccccCCcccceeCcccchhhccccccCcCCCCCChhhhcc
Q 026541 128 SYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCFQCKLAWHAGYRCEESGNL 181 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~ 181 (237)
..|...+|... + ..-+.|..|+..||...+.+. .|.|.....|
T Consensus 15 ~~Cs~~~C~~~----d-----flpf~C~~C~~~FC~~HR~~e--~H~C~~~~~~ 57 (75)
T 1wys_A 15 QHCQVQHCRQR----D-----FLPFVCDGCSGIFCLEHRSKD--SHGCSEVNVV 57 (75)
T ss_dssp CCCSCTTTCCC----S-----CCCEECTTTCCEECSTTCSSG--GGTCCCCSSC
T ss_pred CCcCcccCCCc----c-----ceeeECcccCcCcCcccCCcc--ccCCCCCccc
Confidence 57777777765 1 367889999999999888652 3466654443
No 159
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=32.22 E-value=20 Score=23.13 Aligned_cols=31 Identities=19% Similarity=0.506 Sum_probs=22.1
Q ss_pred ccCCccccCceeeeccccCCcccceeCcccchhhcc
Q 026541 128 SYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
+.|| +|.+.-..=.. ....+.|..|+...|.
T Consensus 33 VkCp--~C~n~q~VFSh---A~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFSN---AQSTIICEKCSAILCK 63 (81)
T ss_dssp EECS--SSCCEEEEETT---CSSCEECSSSCCEEEE
T ss_pred eECC--CCCCeeEEEec---CccEEEccCCCCEEee
Confidence 6899 89875543222 2588999999988774
No 160
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=31.75 E-value=13 Score=22.38 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=22.6
Q ss_pred ccceeCcccchhhcccccc-CcCCCCCC
Q 026541 149 VKKAQCPKCKQWFCFQCKL-AWHAGYRC 175 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C 175 (237)
...+.|..|+..+|..|.. ..|.++.-
T Consensus 18 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 45 (64)
T 2d8u_A 18 KINIYCLTCEVPTCSMCKVFGIHKACEV 45 (64)
T ss_dssp CCCSEESSSCCCCCSHHHHSSSTTSSCE
T ss_pred ccceEcCcCCceeCccccCCCcCCCCCe
Confidence 5788999999999999986 47877753
No 161
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=31.22 E-value=53 Score=19.47 Aligned_cols=13 Identities=15% Similarity=0.575 Sum_probs=10.9
Q ss_pred eeecCCCCcCCCCCC
Q 026541 83 AKIECPGLHCEQFLD 97 (237)
Q Consensus 83 ~~i~CP~~~C~~~i~ 97 (237)
.|++|.. |+..|.
T Consensus 2 iPVRCFT--CGkvi~ 14 (55)
T 1ef4_A 2 IPVRCLS--CGKPVS 14 (55)
T ss_dssp CSSSCSC--TTSCCH
T ss_pred CCeecCC--CCCChh
Confidence 5899988 998884
No 162
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=30.99 E-value=48 Score=22.50 Aligned_cols=53 Identities=15% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCCccccccccCCCc-----cccccccCCCCCcccHHHHH--HHHHhhcccCCceeecCCCCcCC
Q 026541 36 DGTFTCDICIEPMSV-----NNKFKNNNLCTHPFCQDCTV--KYIEVKVRDNNTAKIECPGLHCE 93 (237)
Q Consensus 36 ~~~~~C~iC~~~~~~-----~~~~~~~~~C~H~~C~~Cl~--~~~~~~i~~~~~~~i~CP~~~C~ 93 (237)
.+...|.+|+..-.. .+.++.-..|+..|...||. .-+...+..+. -.||. |.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~---W~C~~--C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALR---WQCIE--CK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSC---CCCTT--TC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccc---ccccc--CC
Confidence 467889999876421 12333455789999999995 33444555544 46776 64
No 163
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=30.45 E-value=29 Score=27.34 Aligned_cols=42 Identities=36% Similarity=0.607 Sum_probs=23.2
Q ss_pred HHHHHhhcCCCcccCCccccCcee--eeccccCCcccceeCcccchhhcc
Q 026541 116 HLCEDYVLGFERSYCPNRNCMAVM--VNECEGIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 116 ~~~~~~~~~~~~~~Cp~~~C~~~~--~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
.+.|.++. ...+|| .|+..- ..+.. .-...+.|+.|+..|=+
T Consensus 25 VLTE~Wv~--~n~yCP--nCG~~~l~~f~nN--~PVaDF~C~~C~EeyEL 68 (257)
T 4esj_A 25 ILTEDWVY--RQSYCP--NCGNNPLNHFENN--RPVADFYCNHCSEEFEL 68 (257)
T ss_dssp HHHHHHHH--HHCCCT--TTCCSSCEEC------CCCEEECTTTCCEEEE
T ss_pred hhhHHHHH--HCCcCC--CCCChhhhhccCC--CcccccccCCcchhhee
Confidence 34555553 237999 787743 33332 22567889888766533
No 164
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=30.25 E-value=34 Score=21.48 Aligned_cols=13 Identities=23% Similarity=0.787 Sum_probs=8.7
Q ss_pred CCcccCCCCCccee
Q 026541 196 MNWTRCPGCGNCIE 209 (237)
Q Consensus 196 ~~~k~CP~C~~~ie 209 (237)
..|+.|| ||..|+
T Consensus 19 ~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 19 AKTRKCV-CGRTVN 31 (71)
T ss_dssp CSEEEET-TTEEEE
T ss_pred CcEEECC-CCCeee
Confidence 4667777 777664
No 165
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=29.76 E-value=20 Score=23.07 Aligned_cols=27 Identities=15% Similarity=0.532 Sum_probs=17.7
Q ss_pred ccCCccccCceeeeccccCCcccceeCcccchh
Q 026541 128 SYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQW 160 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 160 (237)
+.|. +|+........ .....|+.|+.+
T Consensus 38 I~Cn--DC~~~s~v~~h----~lg~kC~~C~Sy 64 (79)
T 2k2d_A 38 ILCN--DCNGRSTVQFH----ILGMKCKICESY 64 (79)
T ss_dssp EEES--SSCCEEEEECC----TTCCCCTTTSCC
T ss_pred EECC--CCCCCccCCce----eecccCcCCCCc
Confidence 6888 88887766543 344478777654
No 166
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=28.92 E-value=13 Score=23.76 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.3
Q ss_pred ccceeCcccchhhcccccc-CcCCCCCC
Q 026541 149 VKKAQCPKCKQWFCFQCKL-AWHAGYRC 175 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C 175 (237)
...++|..|+..+|..|.. ..|.+++-
T Consensus 28 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 55 (84)
T 2dja_A 28 KVNMYCVSDDQLICALCKLVGRHRDHQV 55 (84)
T ss_dssp CCCEEETTTTEEECHHHHHTSTTTTCCB
T ss_pred cccEEcCCCCceEcccCcCCCCCCCCCc
Confidence 5789999999999999998 67887754
No 167
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=28.65 E-value=28 Score=28.23 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=20.3
Q ss_pred ccCCCCCcceeec--C--CCcceEe-cCCc
Q 026541 199 TRCPGCGNCIERK--K--GCRIMFC-RFIF 223 (237)
Q Consensus 199 k~CP~C~~~iek~--~--GCnhm~C-~C~~ 223 (237)
++||.|+.+|++. + |=...+| +|..
T Consensus 252 ~pC~~CGt~I~~~~~g~~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 252 PNCDQCHSKITVCRFGENSRMTYFCPHCQK 281 (287)
T ss_dssp SBCTTTCCBCEEECSSTTCCCEEECTTTSC
T ss_pred CCCCCCCCEEEEEEecCCCCCEEECCCccc
Confidence 4999999999984 4 7888889 4864
No 168
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=28.27 E-value=39 Score=17.49 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=12.6
Q ss_pred ccCCccccCceeeeccc
Q 026541 128 SYCPNRNCMAVMVNECE 144 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~ 144 (237)
+.||.|+|....-....
T Consensus 2 ~~CPtpGC~g~GH~~g~ 18 (31)
T 2jx1_A 2 LKCPTPGCDGSGHITGN 18 (31)
T ss_dssp CSCSCTTCCSSCCSSSS
T ss_pred CcCCCCCccccceeccc
Confidence 45999999987766554
No 169
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.28 E-value=36 Score=20.83 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=22.0
Q ss_pred ccCCccccCceeeeccccCCcccceeCcccchhhcc
Q 026541 128 SYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
+.|| +|.+.-..=. +....+.|..|+...|.
T Consensus 16 VkCp--~C~~~q~VFS---ha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVFS---HPATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEES---SCSSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEEe---cCCeEEEccCcCCEEec
Confidence 7899 8987554421 22578999999988874
No 170
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.19 E-value=25 Score=21.15 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTV 70 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~ 70 (237)
+.+...|++|..+......++.--.|..-|...|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 355678999988774434344445677778888864
No 171
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=26.99 E-value=83 Score=22.33 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=23.3
Q ss_pred CChhHHHHHHHHHHHHhhc-C--------CCcccCCccccCceeeecc
Q 026541 105 IPSSLFLKWCDHLCEDYVL-G--------FERSYCPNRNCMAVMVNEC 143 (237)
Q Consensus 105 l~~~~~~~y~~~~~~~~~~-~--------~~~~~Cp~~~C~~~~~~~~ 143 (237)
+.++.++...+.+.+..+. . +...+|. +|++.+....
T Consensus 39 v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~--~CG~~~~~~~ 84 (139)
T 3a43_A 39 VAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCR--NCNYEWKLKE 84 (139)
T ss_dssp CCHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEET--TTCCEEEGGG
T ss_pred hhHHHHHHHHHHHHcCCcccCCEEEEEecCCcEECC--CCCCEEeccc
Confidence 4556666655555554432 2 4468999 8998877654
No 172
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.91 E-value=7.5 Score=20.73 Aligned_cols=15 Identities=20% Similarity=0.687 Sum_probs=11.8
Q ss_pred CCccccccccCCCcc
Q 026541 37 GTFTCDICIEPMSVN 51 (237)
Q Consensus 37 ~~~~C~iC~~~~~~~ 51 (237)
+.+.|++|+..+...
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 458999999888554
No 173
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=26.90 E-value=31 Score=25.56 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=19.0
Q ss_pred CcccCCcccc-Cce-------eeeccccCCcccceeCcccchhh
Q 026541 126 ERSYCPNRNC-MAV-------MVNECEGIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 126 ~~~~Cp~~~C-~~~-------~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
+.+.||+|+| ... +...+. .....+|..|+..+
T Consensus 113 gvl~C~Np~CITn~~~Epvs~F~v~~~---~~~~lrC~YCe~~~ 153 (168)
T 1pg5_B 113 GILKCPNPYCITSNDVEAIPTFKTLTE---KPLKMRCEYCETII 153 (168)
T ss_dssp SSSCCSCTTBGGGTCTTSCCEEEEEET---TTTEEEETTTCCEE
T ss_pred CeEEcCCCCcccCCCCccccEEEEEcC---CCCEEEeeCCCCEe
Confidence 3578999999 311 111111 13467888887654
No 174
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=26.34 E-value=58 Score=24.06 Aligned_cols=23 Identities=35% Similarity=0.791 Sum_probs=15.2
Q ss_pred ccCCccccCceeeeccccCCcccceeCcccch
Q 026541 128 SYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQ 159 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~ 159 (237)
-.|+ .|+++...+ .+. .||.|+.
T Consensus 139 ~~C~--~CG~i~~~~------~p~-~CP~Cg~ 161 (170)
T 3pwf_A 139 YICP--ICGYTAVDE------APE-YCPVCGA 161 (170)
T ss_dssp EECT--TTCCEEESC------CCS-BCTTTCC
T ss_pred eEeC--CCCCeeCCC------CCC-CCCCCCC
Confidence 3498 899888621 222 7888874
No 175
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=26.13 E-value=1e+02 Score=20.54 Aligned_cols=51 Identities=16% Similarity=0.019 Sum_probs=27.2
Q ss_pred eecCCCCcCCCCCCHHHHhccCChhHHHHHHHHHHHHhhcC----------CCcccCCccccCceeeeccc
Q 026541 84 KIECPGLHCEQFLDPFACKHTIPSSLFLKWCDHLCEDYVLG----------FERSYCPNRNCMAVMVNECE 144 (237)
Q Consensus 84 ~i~CP~~~C~~~i~~~~i~~~l~~~~~~~y~~~~~~~~~~~----------~~~~~Cp~~~C~~~~~~~~~ 144 (237)
-+.||. |+.++.. +..+.+++....+....+.. .+...|+ .|+.++...++
T Consensus 8 ILaCP~--cK~pL~l------~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~--~c~~~YPI~dG 68 (97)
T 2k5r_A 8 LLCSPD--TRQPLSL------LESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITR--DRKQVFRIEDS 68 (97)
T ss_dssp SCCCCT--TSSCCEE------CCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECT--TSCEEEEEETT
T ss_pred heECCC--CCCcccc------cccchhhhhhhhhhccccccccccccccccCCeEEcC--CCCCCccccCC
Confidence 479999 9987764 22333333333333333332 1235677 67777666554
No 176
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=26.01 E-value=30 Score=18.91 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=11.7
Q ss_pred cCCcccCCCCCcceee
Q 026541 195 KMNWTRCPGCGNCIER 210 (237)
Q Consensus 195 ~~~~k~CP~C~~~iek 210 (237)
......||+|+..|.-
T Consensus 6 ~~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 6 AEDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCCEEECTTTCCEEEG
T ss_pred cCCCcccccccCcCCc
Confidence 3455689999998764
No 177
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=25.94 E-value=39 Score=20.40 Aligned_cols=28 Identities=25% Similarity=0.617 Sum_probs=16.6
Q ss_pred hcCCCcccCCccccCceeeeccccCCcccceeCcccchh
Q 026541 122 VLGFERSYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQW 160 (237)
Q Consensus 122 ~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 160 (237)
+..+++..|| .|+.+.. +...|+.||++
T Consensus 25 l~~p~l~~c~--~cGe~~~---------~H~vc~~CG~Y 52 (60)
T 3v2d_5 25 LTPPTLVPCP--ECKAMKP---------PHTVCPECGYY 52 (60)
T ss_dssp CCCCCCEECT--TTCCEEC---------TTSCCTTTCEE
T ss_pred ccCCceeECC--CCCCeec---------ceEEcCCCCcC
Confidence 3346677888 6766543 33447777643
No 178
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.88 E-value=36 Score=27.95 Aligned_cols=29 Identities=31% Similarity=0.617 Sum_probs=21.4
Q ss_pred ccCCCCCcc-----ee---ecCCCcceEec-CCcEEEe
Q 026541 199 TRCPGCGNC-----IE---RKKGCRIMFCR-FIFLSLC 227 (237)
Q Consensus 199 k~CP~C~~~-----ie---k~~GCnhm~C~-C~~~fc~ 227 (237)
-.||-||.. |. +.+|=-++.|. |++.|-+
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~ 220 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY 220 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee
Confidence 589999974 32 14788899995 9999853
No 179
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=25.35 E-value=20 Score=23.14 Aligned_cols=31 Identities=19% Similarity=0.615 Sum_probs=21.4
Q ss_pred ccCCccccCceeeeccccCCcccceeCcccchhhcc
Q 026541 128 SYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
+.|| +|.+.-..=.. ....+.|..|+...|.
T Consensus 35 VkCp--~C~~~q~VFSh---a~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCP--GCLNITTVFSH---AQTAVTCESCSTILCT 65 (82)
T ss_dssp EECT--TSCSCEEEESB---CSSCCCCSSSCCCCEE
T ss_pred EECC--CCCCeeEEEec---CCeEEEccccCCEEec
Confidence 7899 88875443221 1478899999988774
No 180
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=25.19 E-value=15 Score=30.10 Aligned_cols=32 Identities=22% Similarity=0.530 Sum_probs=22.9
Q ss_pred hcCCcccCCCCCcceeecC-CCcceEec-CCcEE
Q 026541 194 EKMNWTRCPGCGNCIERKK-GCRIMFCR-FIFLS 225 (237)
Q Consensus 194 ~~~~~k~CP~C~~~iek~~-GCnhm~C~-C~~~f 225 (237)
.+..|.+||+|+..|...+ .=|...|. |++++
T Consensus 20 ~~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 20 PEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp ---CEECCTTTCCCEETTHHHHTTTBCTTTCCBC
T ss_pred CHHHHHhhhhccchhhHHHHHHHhCCCCCCCCCC
Confidence 3567999999999998874 22778884 88764
No 181
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=24.43 E-value=28 Score=25.56 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=19.7
Q ss_pred cCCcccCCCCCcceeecCCCcceEec--CCc---EEEe
Q 026541 195 KMNWTRCPGCGNCIERKKGCRIMFCR--FIF---LSLC 227 (237)
Q Consensus 195 ~~~~k~CP~C~~~iek~~GCnhm~C~--C~~---~fc~ 227 (237)
+...|.||+|.-+++ ++.|+ ||| +|.-
T Consensus 107 KQq~k~CpnC~g~L~------~~~Crgh~GyPVThFWr 138 (174)
T 1odh_A 107 KQQRKSCPNCNGPLK------LIPCRGHGGFPVTNFWR 138 (174)
T ss_dssp HHHHSBCSSSCCBEE------EECCCTBTTBCCEEEEE
T ss_pred HhhcCCCCCCCccee------eEeccCcCCCcceEEEE
Confidence 345589999998885 68885 884 6643
No 182
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=24.39 E-value=36 Score=20.51 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=19.4
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDC 68 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~C 68 (237)
.....+|.||..+......-..-.-|.-.||..|
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRC 39 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARC 39 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTS
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeeccc
Confidence 4567899999988743321112233455566555
No 183
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=24.16 E-value=46 Score=20.06 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=15.8
Q ss_pred cCCCcccCCccccCceeeeccccCCcccceeCcccchh
Q 026541 123 LGFERSYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQW 160 (237)
Q Consensus 123 ~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 160 (237)
..+.+..|| .|+... .+...|+.||++
T Consensus 26 ~~p~l~~c~--~cG~~~---------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 26 TAPNLTECP--QCHGKK---------LSHHICPNCGYY 52 (60)
T ss_dssp CCCCCEECT--TTCCEE---------CTTBCCTTTCBS
T ss_pred cCCCceECC--CCCCEe---------CCceEcCCCCcC
Confidence 346667777 676663 234456666643
No 184
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=24.10 E-value=64 Score=25.70 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=23.6
Q ss_pred CcccCCCCCcceeecCCCcceEec-CCcE
Q 026541 197 NWTRCPGCGNCIERKKGCRIMFCR-FIFL 224 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~~ 224 (237)
..+.||.|+.+.+...+=..+.|. |++.
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCCE
Confidence 458999999999888877889995 9853
No 185
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=23.61 E-value=56 Score=20.14 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=21.8
Q ss_pred ccCCccccCceeeeccccCCcccceeCcccchhhcc
Q 026541 128 SYCPNRNCMAVMVNECEGIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
+.|| +|.+.-..=.. ....+.|..|+...|.
T Consensus 8 VKCp--~C~niq~VFSh---A~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCP--DCEHEQVIFDH---PSTIVKCIICGRTVAE 38 (66)
T ss_dssp EECT--TTCCEEEEESS---CSSCEECSSSCCEEEE
T ss_pred EECC--CCCCceEEEec---CceEEEcccCCCEEee
Confidence 6899 88875443221 2578999999988874
No 186
>2cs8_A KIAA0535 protein; ST18, zinc-finger, C2HC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.51 E-value=55 Score=22.28 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=13.5
Q ss_pred CcccCCccccCceeeeccc
Q 026541 126 ERSYCPNRNCMAVMVNECE 144 (237)
Q Consensus 126 ~~~~Cp~~~C~~~~~~~~~ 144 (237)
+...||+|+|....-+...
T Consensus 61 e~~~CptPGCdG~GHv~g~ 79 (108)
T 2cs8_A 61 ELPHCPLPGCNGLGHVNNV 79 (108)
T ss_dssp CCCCCSCSSCCSCCCTTSS
T ss_pred cCCCCCCCCCCccccccCC
Confidence 3467999999876655543
No 187
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=23.45 E-value=29 Score=20.99 Aligned_cols=36 Identities=14% Similarity=0.019 Sum_probs=25.1
Q ss_pred cCCCCcCCCCCCHHHHhccCChhHHHHHHHHHHHHhhc
Q 026541 86 ECPGLHCEQFLDPFACKHTIPSSLFLKWCDHLCEDYVL 123 (237)
Q Consensus 86 ~CP~~~C~~~i~~~~i~~~l~~~~~~~y~~~~~~~~~~ 123 (237)
.||. |+.+.....=..+-++|-+.+|...+.+++..
T Consensus 20 ~CP~--CG~~T~~~hParfSp~Dky~~yR~~~kk~~~~ 55 (60)
T 2apo_B 20 ICPK--CGEKTVIPKPPKFSLEDRWGKYRRMLKRALKN 55 (60)
T ss_dssp BCSS--SCSBCBCCCCCCCCTTCTTHHHHHHHHHHHHT
T ss_pred cCcC--CCCcCCCCCCCCCCCCcchHHHHHHHHHHhcc
Confidence 4888 88665544444566678899999888776543
No 188
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.40 E-value=45 Score=24.51 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=26.5
Q ss_pred hcCCCCccccccccCCCccccccccC--CCCCcccHHHHHHHHHh
Q 026541 33 EDIDGTFTCDICIEPMSVNNKFKNNN--LCTHPFCQDCTVKYIEV 75 (237)
Q Consensus 33 ~~~~~~~~C~iC~~~~~~~~~~~~~~--~C~H~~C~~Cl~~~~~~ 75 (237)
+++.-...|.||-+.- + ++.-- +|...||.+||...+..
T Consensus 74 DeDG~~~yC~wC~~Gg---~-l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGR---E-VLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp CTTSSBSSCTTTSCCS---E-EEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCCCcceeeEecCCC---e-EEeeCCCCCCCchhHHHHHHhcCH
Confidence 3355677899998643 2 21222 58889999999988754
No 189
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=23.20 E-value=35 Score=23.05 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=33.7
Q ss_pred CCccccccccCCCccccccccC-CCCCcccHHHHHHHH--HhhcccCCceeecCCCCcCC
Q 026541 37 GTFTCDICIEPMSVNNKFKNNN-LCTHPFCQDCTVKYI--EVKVRDNNTAKIECPGLHCE 93 (237)
Q Consensus 37 ~~~~C~iC~~~~~~~~~~~~~~-~C~H~~C~~Cl~~~~--~~~i~~~~~~~i~CP~~~C~ 93 (237)
+...|+||..++.+...++.-- .|..-|...|+.--- ...|.........||. |.
T Consensus 2 ~~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~--C~ 59 (105)
T 2xb1_A 2 LVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDL--CL 59 (105)
T ss_dssp CCCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHH--HH
T ss_pred CcCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECcc--cc
Confidence 4578999999875544443343 688889999976221 1112111225688987 76
No 190
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.15 E-value=30 Score=19.90 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=11.8
Q ss_pred CCcccCCCCCcceee
Q 026541 196 MNWTRCPGCGNCIER 210 (237)
Q Consensus 196 ~~~k~CP~C~~~iek 210 (237)
...+.||+|++.+..
T Consensus 10 ~~~~~CPrCn~~f~~ 24 (49)
T 2e72_A 10 GGRKICPRCNAQFRV 24 (49)
T ss_dssp SSCCCCTTTCCCCSS
T ss_pred CCceeCCcccccccc
Confidence 356899999998764
No 191
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=22.92 E-value=40 Score=22.50 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=16.5
Q ss_pred ccCCCCCcceeecCCCcceEe-cCCc
Q 026541 199 TRCPGCGNCIERKKGCRIMFC-RFIF 223 (237)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C-~C~~ 223 (237)
..||.|+...... +..+| .|||
T Consensus 17 ~lCrRCG~~sfH~---qK~~CgkCGY 39 (97)
T 2zkr_2 17 TLCRRCGSKAYHL---QKSTCGKCGY 39 (97)
T ss_dssp ECCTTTCSSCEET---TSCCBTTTCT
T ss_pred CcCCCCCCccCcC---ccccCcccCC
Confidence 5899999887754 36788 5885
No 192
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.65 E-value=29 Score=20.25 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=15.4
Q ss_pred CCcccCCCCCcceeecCCCcceEe-cCCcE
Q 026541 196 MNWTRCPGCGNCIERKKGCRIMFC-RFIFL 224 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C-~C~~~ 224 (237)
..-+.||+|+..+ +=.--.| +||+.
T Consensus 12 ~~k~iCpkC~a~~----~~gaw~CrKCG~~ 37 (51)
T 3j21_g 12 FKKYVCLRCGATN----PWGAKKCRKCGYK 37 (51)
T ss_dssp SSEEECTTTCCEE----CTTCSSCSSSSSC
T ss_pred hCCccCCCCCCcC----CCCceecCCCCCc
Confidence 4557899999872 2223456 37754
No 193
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=22.63 E-value=1.4e+02 Score=22.41 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=11.2
Q ss_pred CCcccCCccccCce
Q 026541 125 FERSYCPNRNCMAV 138 (237)
Q Consensus 125 ~~~~~Cp~~~C~~~ 138 (237)
..+..||+..|...
T Consensus 104 g~FG~CPRv~C~~q 117 (182)
T 1qf8_A 104 GDFGYCPRVYCENQ 117 (182)
T ss_dssp TTTCBCCBGGGTTC
T ss_pred CcCCCCCccccCCC
Confidence 56889999999753
No 194
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=22.39 E-value=47 Score=24.70 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=16.9
Q ss_pred cccCCCCCcceeecCCCcceEe-cCCc
Q 026541 198 WTRCPGCGNCIERKKGCRIMFC-RFIF 223 (237)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C-~C~~ 223 (237)
+..||+|+..|...+ =....| +|+.
T Consensus 42 Y~ACp~CnKKV~~~~-~g~~~CekC~~ 67 (172)
T 3u50_C 42 YYRCTCQGKSVLKYH-GDSFFCESCQQ 67 (172)
T ss_dssp EEECTTSCCCEEEET-TTEEEETTTTE
T ss_pred ehhchhhCCEeeeCC-CCeEECCCCCC
Confidence 478999998887432 236678 5764
No 195
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=21.45 E-value=60 Score=19.91 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=13.3
Q ss_pred cccCCccccCceeeecccc
Q 026541 127 RSYCPNRNCMAVMVNECEG 145 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~ 145 (237)
.+.||+ +|+..+.+....
T Consensus 16 ~v~C~~-~C~~~v~r~~l~ 33 (76)
T 2yuc_A 16 VIPCPN-RCPMKLSRRDLP 33 (76)
T ss_dssp CCBCTT-CCSCBCCSSSST
T ss_pred ccCCCc-cccHHhhHhHHH
Confidence 478876 898888776664
No 196
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=21.38 E-value=1.2e+02 Score=21.41 Aligned_cols=35 Identities=23% Similarity=0.589 Sum_probs=25.0
Q ss_pred CCCCccccccccCCCccccccccCCCCCcccHHHHHHHH
Q 026541 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTVKYI 73 (237)
Q Consensus 35 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~ 73 (237)
+.....|.+|.+.- + .+.--.|-..||..|+...+
T Consensus 54 Dg~~~~C~vC~dGG---~-LlcCd~Cpr~Fc~~Cl~~~l 88 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG---N-LICCDFCHNAFCKKCILRNL 88 (129)
T ss_dssp TSCBSSCTTTCCCS---E-EEECSSSSCEEEHHHHHHHT
T ss_pred CCCCCcCeecCCCC---e-eEecCCCchhhhHHHhCCCc
Confidence 45566799999643 2 22345789999999999874
No 197
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=20.47 E-value=40 Score=24.57 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=19.5
Q ss_pred CcccCCccccCc-------eeeeccccCCcccceeCcccchhh
Q 026541 126 ERSYCPNRNCMA-------VMVNECEGIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 126 ~~~~Cp~~~C~~-------~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
+.+.||+|+|-. .+...+.. .....+|..|+..+
T Consensus 104 gv~~C~Np~CITn~E~v~s~F~v~~~~--~~~~lrC~YCe~~~ 144 (153)
T 2be7_D 104 NVFPCPNSNCITHGEPVTSSFSIKKTK--GNIGLKCKYCEKTF 144 (153)
T ss_dssp SSSCCSCTTCTTSSSSCCCCEEEEEET--TEEEEEETTTCCEE
T ss_pred CeEEcCCCCCCcCCcccccEEEEeecC--CCCEEEeeCCCCEe
Confidence 457899999922 22221110 02457898887654
No 198
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.19 E-value=13 Score=18.31 Aligned_cols=20 Identities=20% Similarity=0.597 Sum_probs=14.6
Q ss_pred eeecCCCCcCCCCCCHHHHhcc
Q 026541 83 AKIECPGLHCEQFLDPFACKHT 104 (237)
Q Consensus 83 ~~i~CP~~~C~~~i~~~~i~~~ 104 (237)
+.+.||. |.+.++-..|...
T Consensus 5 f~vqcpv--cqq~mpaahin~h 24 (29)
T 3vhs_A 5 FQVQCPV--CQQMMPAAHINSH 24 (29)
T ss_dssp CEEECTT--TCCEEEGGGHHHH
T ss_pred eeeeChH--HHHhCcHHHHHHH
Confidence 5678999 9888776666543
Done!