Query 026542
Match_columns 237
No_of_seqs 88 out of 90
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3im4_C Dual specificity A kina 40.9 9.2 0.00032 26.0 1.0 12 143-154 9-20 (45)
2 2w1r_A Spovt, stage V sporulat 31.2 73 0.0025 24.2 4.9 57 155-222 8-64 (123)
3 4gb7_A 6-aminohexanoate-dimer 29.7 45 0.0015 30.0 4.0 56 156-214 102-159 (422)
4 3i7u_A AP4A hydrolase; nudix p 21.7 68 0.0023 24.0 3.1 16 164-179 6-21 (134)
5 1jb0_J Photosystem 1 reaction 14.9 1.4E+02 0.0048 19.8 3.0 19 66-84 15-33 (41)
6 1ydm_A Hypothetical protein YQ 13.9 1.3E+02 0.0044 24.4 3.2 32 198-229 53-84 (187)
7 1zcz_A Bifunctional purine bio 12.6 1.7E+02 0.0058 28.2 4.0 71 141-224 345-415 (464)
8 2pbt_A AP4A hydrolase; nudix p 12.1 1.7E+02 0.0058 20.7 3.1 22 163-184 5-29 (134)
9 1k2e_A Nudix homolog; nudix/MU 12.0 1.1E+02 0.0037 23.0 2.1 15 165-179 4-18 (156)
10 3mmh_A FRMSR, methionine-R-sul 10.8 5.8E+02 0.02 20.0 6.2 24 203-226 83-106 (167)
No 1
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=40.86 E-value=9.2 Score=25.97 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHH
Q 026542 143 LPDSVVSELLWA 154 (237)
Q Consensus 143 Lsd~~k~ELAWa 154 (237)
-+|..++|+||-
T Consensus 9 ~~D~aqEEMAWq 20 (45)
T 3im4_C 9 NTDEAQEELAWK 20 (45)
T ss_dssp --CHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 467899999994
No 2
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=31.19 E-value=73 Score=24.21 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=41.2
Q ss_pred HHHHhhhccccEEEEEECCEEEEEEeeccCCCCCCcceeecccccchhHHHHHHHhcCCeeeeecccc
Q 026542 155 WESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLL 222 (237)
Q Consensus 155 S~~LLtnT~a~SvlV~~~G~vlLrRGi~~~~~~~~~a~~vd~~~~~pG~I~~r~l~~~~~iYLvnL~L 222 (237)
-+.|...|.+ .|.|..+.+++...|.-... -.+ .++ ++..+++|++++.++.-|-.-
T Consensus 8 AeiI~~~~~~-aV~ItD~~~ilA~~G~g~~~-------~~~-~~i--s~~~~~~i~~~k~~~~~~~~~ 64 (123)
T 2w1r_A 8 ADALYDSLGH-SVLICDRDVYIAVSGSSKKD-------YLN-KSI--SEMLERTMDQRSSVLESDAKS 64 (123)
T ss_dssp HHHHHHHHCS-EEEEECSSBEEEEESSCHHH-------HBT-CBB--CHHHHHHHHHCSCEEESSCEE
T ss_pred HHHHHHHHCC-eEEEEcCccEEEEEecChhh-------cCC-Ccc--CHHHHHHHHcCCEEEEcCCcc
Confidence 4678899999 99999999988888853210 011 123 667899999999998866543
No 3
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis}
Probab=29.72 E-value=45 Score=30.00 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=33.3
Q ss_pred HHHhhhccccEEEEEECCEEEEEEeeccCCCCCCcce-eec-ccccchhHHHHHHHhcCCe
Q 026542 156 ESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAV-IVD-ASKLKQGSVYLGVMRSKAQ 214 (237)
Q Consensus 156 ~~LLtnT~a~SvlV~~~G~vlLrRGi~~~~~~~~~a~-~vd-~~~~~pG~I~~r~l~~~~~ 214 (237)
+..|..|.|.++||..+|+++..+- .+.. ..+.. .+- -+|..-+-.+-.+.++|+.
T Consensus 102 ~~~l~~~~t~a~lV~k~GkIv~E~Y-~~~~--~~dt~~~i~SvtKs~ta~~i~~lve~G~l 159 (422)
T 4gb7_A 102 KELLDDNKTDAFVVVHNGQLVYERY-FNGY--NESEPHGMASLAKVFTGAIIQSLAEENRI 159 (422)
T ss_dssp HHHHHHTTEEEEEEEETTEEEEEEE-CTTC--CTTSCEECGGGGHHHHHHHHHHHHHTTSS
T ss_pred HHHHHhcCCCEEEEEECCEEEEEeC-CCCC--CCCCeeeeeeccHHHHHHHHHHHHHcCCc
Confidence 4567889999999999999998763 2221 11111 111 1222235555666777764
No 4
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=21.67 E-value=68 Score=23.96 Aligned_cols=16 Identities=31% Similarity=0.214 Sum_probs=13.4
Q ss_pred ccEEEEEECCEEEEEE
Q 026542 164 CRSLVVVYDGIYLLQI 179 (237)
Q Consensus 164 a~SvlV~~~G~vlLrR 179 (237)
+++.||+.+|++||.+
T Consensus 6 aag~vv~~~~~vLL~~ 21 (134)
T 3i7u_A 6 SAGGVLFKDGEVLLIK 21 (134)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEEEECCEEEEEE
Confidence 5677889999999875
No 5
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=14.86 E-value=1.4e+02 Score=19.77 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 026542 66 LPIYVGGASLLAVLFNRTV 84 (237)
Q Consensus 66 LPl~vG~l~~~llL~Nr~l 84 (237)
.-+|.+...|+++-+||+.
T Consensus 15 a~~w~~~tAg~lIEiNRff 33 (41)
T 1jb0_J 15 AAIWMTITAGILIEFNRFY 33 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3468899999999999998
No 6
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=13.95 E-value=1.3e+02 Score=24.36 Aligned_cols=32 Identities=6% Similarity=-0.003 Sum_probs=22.8
Q ss_pred ccchhHHHHHHHhcCCeeeeeccccCCCCCCC
Q 026542 198 KLKQGSVYLGVMRSKAQRYLANLLLYPGRSEL 229 (237)
Q Consensus 198 ~~~pG~I~~r~l~~~~~iYLvnL~LyPGR~EF 229 (237)
++-..+|.+.++++||.+||+-...--|..+|
T Consensus 53 Evdt~~li~~~~~~gk~v~lP~~~~~~~~m~f 84 (187)
T 1ydm_A 53 EIPTRPVIEQAWEEGKQVCIPKCHPDTKKMQF 84 (187)
T ss_dssp SCCCHHHHHHHHHTTCEEEEECC---CCCCCE
T ss_pred CCCHHHHHHHHHHCCCEEEEeEEecCCCcEEE
Confidence 56678999999999999999965322234555
No 7
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=12.57 E-value=1.7e+02 Score=28.24 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccccEEEEEECCEEEEEEeeccCCCCCCcceeecccccchhHHHHHHHhcCCeeeeecc
Q 026542 141 SYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANL 220 (237)
Q Consensus 141 ~~Lsd~~k~ELAWaS~~LLtnT~a~SvlV~~~G~vlLrRGi~~~~~~~~~a~~vd~~~~~pG~I~~r~l~~~~~iYLvnL 220 (237)
...++++.++|..||.. .+.|..-++++..||+++ |+-. |...+||..+. -..++-+.++...|+.=
T Consensus 345 ~~pt~~e~~DL~FAwkv-~K~vKSNAIv~akdg~tv---GiGa-----GQ~sRV~s~ri----A~~kA~~~~~G~vlASD 411 (464)
T 1zcz_A 345 EPLSEKELEDLEFAYRV-VEGAKSNAVLIAKDGVTV---GIGS-----GQPSRKRAAWI----ATVMAGEKAKGAVAASD 411 (464)
T ss_dssp CCCCHHHHHHHHHHHHH-HHHSCSSCEEEEETTEEE---EEEC-----SCSSHHHHHHH----HHHHHGGGGTTCEEEES
T ss_pred CCCCHHHHHHHHHHHHH-HhhcccceEEEEeCCeEE---EECC-----CCCchHHHHHH----HHHHhhcccCCeEEEec
Confidence 35778889999999985 678888999999999965 4433 23345553221 12444556678999999
Q ss_pred ccCC
Q 026542 221 LLYP 224 (237)
Q Consensus 221 ~LyP 224 (237)
++||
T Consensus 412 AFFP 415 (464)
T 1zcz_A 412 AFFP 415 (464)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 9998
No 8
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=12.15 E-value=1.7e+02 Score=20.67 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=15.9
Q ss_pred cccEEEEEECCEEEEEE---eeccC
Q 026542 163 CCRSLVVVYDGIYLLQI---GMAAE 184 (237)
Q Consensus 163 ~a~SvlV~~~G~vlLrR---Gi~~~ 184 (237)
.+.+++|+.+|++||.+ |.|.-
T Consensus 5 ~~~~~vi~~~~~vLl~~r~~~~w~~ 29 (134)
T 2pbt_A 5 FSAGGVLFKDGEVLLIKTPSNVWSF 29 (134)
T ss_dssp EEEEEEEEETTEEEEEECTTSCEEC
T ss_pred eEEEEEEEECCEEEEEEeCCCcEEC
Confidence 35567778899999976 55653
No 9
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=12.02 E-value=1.1e+02 Score=22.96 Aligned_cols=15 Identities=40% Similarity=0.301 Sum_probs=11.3
Q ss_pred cEEEEEECCEEEEEE
Q 026542 165 RSLVVVYDGIYLLQI 179 (237)
Q Consensus 165 ~SvlV~~~G~vlLrR 179 (237)
.+.+|+.+|++||.+
T Consensus 4 ~~~vi~~~~~vLL~~ 18 (156)
T 1k2e_A 4 TSGVLVENGKVLLVK 18 (156)
T ss_dssp EEEECEETTEEEEEE
T ss_pred EEEEEEECCEEEEEE
Confidence 455666799999876
No 10
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=10.77 E-value=5.8e+02 Score=20.01 Aligned_cols=24 Identities=8% Similarity=0.003 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCeeeeeccccCCCC
Q 026542 203 SVYLGVMRSKAQRYLANLLLYPGR 226 (237)
Q Consensus 203 ~I~~r~l~~~~~iYLvnL~LyPGR 226 (237)
-||-+|.++|+++.+.|..-+|+-
T Consensus 83 Gi~G~v~~~g~~~~v~Dv~~~p~~ 106 (167)
T 3mmh_A 83 GVCGQAWAKGGTVVVGDVDAHPDH 106 (167)
T ss_dssp HHHHHHHHHTSCEEESCGGGSTTC
T ss_pred ChHHHHHhCCcEEEECCcccCcch
Confidence 489999999999999999998874
Done!