Query 026542
Match_columns 237
No_of_seqs 88 out of 90
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 16:04:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026542.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026542hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vk6a2 d.113.1.4 (A:126-256) 31.7 12 0.00086 26.5 2.3 18 162-179 3-20 (131)
2 d2dcfa1 e.3.1.1 (A:5-392) 6-am 30.4 20 0.0015 29.9 4.0 58 156-215 70-128 (388)
3 d1ryaa_ d.113.1.5 (A:) GDP-man 18.0 31 0.0023 24.4 2.4 22 158-179 12-36 (160)
4 d1vhma_ d.110.2.1 (A:) Hypothe 17.2 1.6E+02 0.012 20.7 7.3 70 150-229 26-99 (159)
5 d1irya_ d.113.1.1 (A:) 7,8-dih 15.3 39 0.0028 24.2 2.3 18 162-179 4-22 (156)
6 d1k2ea_ d.113.1.1 (A:) Hypothe 14.0 50 0.0036 22.5 2.5 15 165-179 4-18 (152)
7 d1zcza2 c.97.1.4 (A:158-452) A 11.9 1.2E+02 0.0085 25.2 4.7 76 138-226 173-248 (295)
8 d1jb0j_ f.23.18.1 (J:) Subunit 9.7 99 0.0072 19.0 2.5 18 67-84 16-33 (41)
9 d1rkla_ f.23.30.1 (A:) Oligosa 8.3 1.9E+02 0.014 16.9 3.4 27 60-86 4-30 (36)
10 d1jdla_ a.3.1.1 (A:) Cytochrom 7.5 1.4E+02 0.01 20.7 3.0 52 49-107 63-114 (118)
No 1
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}
Probab=31.72 E-value=12 Score=26.51 Aligned_cols=18 Identities=22% Similarity=0.264 Sum_probs=14.8
Q ss_pred ccccEEEEEECCEEEEEE
Q 026542 162 TCCRSLVVVYDGIYLLQI 179 (237)
Q Consensus 162 T~a~SvlV~~~G~vlLrR 179 (237)
++|-.++|..++++||.+
T Consensus 3 ~paViv~i~~~~~vLL~~ 20 (131)
T d1vk6a2 3 APCIIVAIRRDDSILLAQ 20 (131)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred ccEEEEEEEeCCEEEEEE
Confidence 456677899999999986
No 2
>d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]}
Probab=30.37 E-value=20 Score=29.87 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=34.6
Q ss_pred HHHhhhccccEEEEEECCEEEEEEeeccCCCCCCcceeec-ccccchhHHHHHHHhcCCee
Q 026542 156 ESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVD-ASKLKQGSVYLGVMRSKAQR 215 (237)
Q Consensus 156 ~~LLtnT~a~SvlV~~~G~vlLrRGi~~~~~~~~~a~~vd-~~~~~pG~I~~r~l~~~~~i 215 (237)
+.+|..|.+.++||.++|+++..+-.-+-.+. ....+- .+|.--+-+.-.+.++|+.-
T Consensus 70 ~~~l~~~~t~a~lV~~~G~iv~E~y~~~~~~~--t~~~~~SvtKs~ta~li~~lve~G~l~ 128 (388)
T d2dcfa1 70 EQRLEQTYTDAFLVLRGTEVVAEYYRAGFAPD--DRHLLMAVSKSLCGTVVGALVDEGRID 128 (388)
T ss_dssp HHHHHHTTEEEEEEEETTEEEEEEECTTCCTT--CCEECTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhcCCcEEEEEECCEEEEEEecCCCCcc--cchhHHHHHHHHHHHHHHHHHhcCccc
Confidence 45679999999999999999988743221111 111111 12333355566667777653
No 3
>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}
Probab=18.02 E-value=31 Score=24.41 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=13.9
Q ss_pred Hhhhcc--ccEEEEEE-CCEEEEEE
Q 026542 158 LSAVTC--CRSLVVVY-DGIYLLQI 179 (237)
Q Consensus 158 LLtnT~--a~SvlV~~-~G~vlLrR 179 (237)
+..+|+ |-+++|.. +|++||.+
T Consensus 12 ~~~~~p~~~v~~vi~~~~~~vLL~k 36 (160)
T d1ryaa_ 12 VVRSTPLVSLDFIVENSRGEFLLGK 36 (160)
T ss_dssp HHHHSCEEEEEEEEECTTSCEEEEE
T ss_pred HhhcCCEEEEEEEEEeCCCeEEEEE
Confidence 457787 44445553 47888865
No 4
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]}
Probab=17.22 E-value=1.6e+02 Score=20.67 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=41.8
Q ss_pred HHHHHHHHHhh---hccccEEEEEECCEEEEEEeeccCCCCCCcceeecccccchh-HHHHHHHhcCCeeeeeccccCCC
Q 026542 150 ELLWAWESLSA---VTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQG-SVYLGVMRSKAQRYLANLLLYPG 225 (237)
Q Consensus 150 ELAWaS~~LLt---nT~a~SvlV~~~G~vlLrRGi~~~~~~~~~a~~vd~~~~~pG-~I~~r~l~~~~~iYLvnL~LyPG 225 (237)
-|+..+..|.+ ++...++.+..+++..+. ...... +...+..| -+|-.|.++|+++.+.|..-.|+
T Consensus 26 ~L~~i~~~l~~~~~~~~~~~~yl~d~~~~~l~--~~~~~~--------~~~~i~~g~g~~g~v~~~~~~~~v~d~~~d~~ 95 (159)
T d1vhma_ 26 TLANTSALLYERLTDINWAGFYLLEDDTLVLG--PFQGKI--------ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG 95 (159)
T ss_dssp HHHHHHHHHHHHSSSCSEEEEEEEETTEEEEE--EEEESC--------CCSEEETTSHHHHHHHHHTSCEEESCTTTCTT
T ss_pred HHHHHHHHHHHhhccCceEEEEEEECCEeeee--eecCCc--------ceeEEecCCChHHHHHHcCCcEEecChHHhhh
Confidence 36666666644 344455556666665442 121111 11133333 49999999999999999988877
Q ss_pred CCCC
Q 026542 226 RSEL 229 (237)
Q Consensus 226 R~EF 229 (237)
...+
T Consensus 96 ~~~~ 99 (159)
T d1vhma_ 96 HIAC 99 (159)
T ss_dssp CCCS
T ss_pred hhhc
Confidence 5544
No 5
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.30 E-value=39 Score=24.16 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=12.4
Q ss_pred ccccEEE-EEECCEEEEEE
Q 026542 162 TCCRSLV-VVYDGIYLLQI 179 (237)
Q Consensus 162 T~a~Svl-V~~~G~vlLrR 179 (237)
|.-.+++ |..+|++||.+
T Consensus 4 ~r~~~~v~i~~~~~vLL~~ 22 (156)
T d1irya_ 4 SRLYTLVLVLQPQRVLLGM 22 (156)
T ss_dssp CEEEEEECEECSSEEEEEE
T ss_pred cEEEEEEEEEECCEEEEEE
Confidence 3444555 77899999963
No 6
>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=13.99 E-value=50 Score=22.54 Aligned_cols=15 Identities=40% Similarity=0.301 Sum_probs=12.0
Q ss_pred cEEEEEECCEEEEEE
Q 026542 165 RSLVVVYDGIYLLQI 179 (237)
Q Consensus 165 ~SvlV~~~G~vlLrR 179 (237)
++.||.+||++||.+
T Consensus 4 a~~vi~~d~kvLl~~ 18 (152)
T d1k2ea_ 4 TSGVLVENGKVLLVK 18 (152)
T ss_dssp EEEECEETTEEEEEE
T ss_pred EEEEEEECCEEEEEE
Confidence 456778899999876
No 7
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=11.91 E-value=1.2e+02 Score=25.16 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=54.7
Q ss_pred EecCCCCHHHHHHHHHHHHHHhhhccccEEEEEECCEEEEEEeeccCCCCCCcceeecccccchhHHHHHHHhcCCeeee
Q 026542 138 MICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYL 217 (237)
Q Consensus 138 ~l~~~Lsd~~k~ELAWaS~~LLtnT~a~SvlV~~~G~vlLrRGi~~~~~~~~~a~~vd~~~~~pG~I~~r~l~~~~~iYL 217 (237)
+-....+++..++|--||.. .+.+..-++++..+|+++ |+=. |...+||+.+. -++++-++-+...+
T Consensus 173 vT~~~pt~~e~~dL~FA~~v-~k~vkSNAIvlakn~~ti---GiGa-----GQ~sRvda~~i----A~~ka~~~~~g~v~ 239 (295)
T d1zcza2 173 VVGEPLSEKELEDLEFAYRV-VEGAKSNAVLIAKDGVTV---GIGS-----GQPSRKRAAWI----ATVMAGEKAKGAVA 239 (295)
T ss_dssp EESCCCCHHHHHHHHHHHHH-HHHSCSSCEEEEETTEEE---EEEC-----SCSSHHHHHHH----HHHHHGGGGTTCEE
T ss_pred EecCccchhhhhhHHHHHHH-HhhcCcccEEEecCCcEE---Eeec-----cchhhHHHhhh----hHhhhhhhhcCcEE
Confidence 34567888999999999986 577888899999999955 4333 23346664322 13666777788899
Q ss_pred eccccCCCC
Q 026542 218 ANLLLYPGR 226 (237)
Q Consensus 218 vnL~LyPGR 226 (237)
+.=++||-+
T Consensus 240 aSDAFFPF~ 248 (295)
T d1zcza2 240 ASDAFFPFP 248 (295)
T ss_dssp EESSCCSSH
T ss_pred EcccCcCCc
Confidence 999999864
No 8
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=9.75 E-value=99 Score=18.96 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 026542 67 PIYVGGASLLAVLFNRTV 84 (237)
Q Consensus 67 Pl~vG~l~~~llL~Nr~l 84 (237)
-+|.+...|+++=+||+.
T Consensus 16 ~~w~~~tAG~lIEiNRFf 33 (41)
T d1jb0j_ 16 AIWMTITAGILIEFNRFY 33 (41)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 468899999999999998
No 9
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.26 E-value=1.9e+02 Score=16.93 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=22.4
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhhcC
Q 026542 60 DDAVRSLPIYVGGASLLAVLFNRTVSG 86 (237)
Q Consensus 60 ~~~~R~LPl~vG~l~~~llL~Nr~ls~ 86 (237)
|+-+..+-++.|.....|.++-|..+.
T Consensus 4 d~qln~~~i~fgi~mmtliviyh~~~s 30 (36)
T d1rkla_ 4 DEQLNSLAITFGIVMMTLIVIYHAVDS 30 (36)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhcCcEEeehhHHHHHHHHHHhhhcc
Confidence 345667889999999999999999865
No 10
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}
Probab=7.54 E-value=1.4e+02 Score=20.70 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=27.4
Q ss_pred ccchhhhccCchHHHhhhhHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHH
Q 026542 49 QDLVADWVMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISL 107 (237)
Q Consensus 49 ~~~~~d~v~~~~~~~R~LPl~vG~l~~~llL~Nr~ls~iapva~~t~sQsRAdVLg~~L 107 (237)
.+.+..|+.+|...+...-.-.+. .+..-.+.-+...+...|.|+|+++-+-
T Consensus 63 ~e~L~~~l~~P~~~i~~~~~~~~~-------~~~~~~~~~m~~~l~~~~d~~dliaYL~ 114 (118)
T d1jdla_ 63 PENIIAYLPDPNAFLRKFLADAGH-------AEQAKGSTKMVFKLPDEQERKDVVAYLK 114 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTC-------GGGGSSCCSCCCCCCCHHHHHHHHHHHG
T ss_pred HHHHHHHHHCHHHhhccccccccc-------cccCCCCCcccccCCCHHHHHHHHHHHH
Confidence 455788999998765322111100 1111111112234567899999998654
Done!