BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026543
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 227 bits (578), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 114/226 (50%), Positives = 155/226 (68%), Gaps = 3/226 (1%)
Query: 8 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEET 67
+P+TH+IFDMDGLLLDTE+ Y+ V + I RY+K + W +K+ +MGKKA+EAAQ+ ++
Sbjct: 28 QPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVL 87
Query: 68 GISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELK 127
+ +S E+ + + + L+ +FPT+ LMPGA LI HL GIP +AT S + F++K
Sbjct: 88 QLP--MSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSRSASFDMK 145
Query: 128 TQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVL 187
T +H+E FSL H+V GDDPEV+ GKP PDIFLA AKRF P ++ LVFEDAP+GV
Sbjct: 146 TSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPA-MEKCLVFEDAPNGVE 204
Query: 188 AAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPKDWGLPPFE 233
AA AGM VVMVPD L + A +L+SL F P+ +GLP +E
Sbjct: 205 AALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE 250
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 13 VIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDK 72
VIFD DG+L DTE Y E + Y K + L ++ G E + E I D
Sbjct: 4 VIFDXDGVLXDTEPLYFEAYRRVAESYGKPYTEDLHRRIXGVPEREGLPILXEALEIKDS 63
Query: 73 LSAEDFLVQREETLQTLFPTSELM---PGASHLIRHLHAKGIPMCVATGSLARHFELKTQ 129
L E+F + E + +F SEL+ PG + + +K I + +AT + R L+
Sbjct: 64 L--ENFKKRVHEEKKRVF--SELLKENPGVREALEFVKSKRIKLALATSTPQRE-ALERL 118
Query: 130 KHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAA 189
+ +L V GD +VK GKP P+I+L +R P ++++VFED+ SGV AA
Sbjct: 119 RRLDLEKYFDVXVFGD--QVKNGKPDPEIYLLVLERLNVVP---EKVVVFEDSKSGVEAA 173
Query: 190 KNAGMSVV 197
K+AG+ +
Sbjct: 174 KSAGIERI 181
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 12/218 (5%)
Query: 7 KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQ---VF 63
+K + V+FDMDG+L ++ +++E ++ + D S + M + A+ VF
Sbjct: 21 RKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHG--LDLSREEAYMHEGRTGASTINIVF 78
Query: 64 VEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARH 123
E G + + + L +P +E MPGA L++ + ++G+ V TGS
Sbjct: 79 QRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGS--GQ 136
Query: 124 FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP 183
L + + H + +VK GKP+P+ +L A K+ G + + E +V E+AP
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK---GGLKADEAVVIENAP 193
Query: 184 SGVLAAKNAGMSVVMVPDPRLDSSY--HSNADQLLSSL 219
GV A AG+ + V LD + AD L S+
Sbjct: 194 LGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSM 231
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 12/218 (5%)
Query: 7 KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQ---VF 63
+K + V+FDMDG+L ++ +++E ++ + D S + M A+ VF
Sbjct: 21 RKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHG--LDLSREEAYMHNGRTGASTINIVF 78
Query: 64 VEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARH 123
E G + + + L +P +E MPGA L++ + ++G+ V TGS
Sbjct: 79 QRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGS--GQ 136
Query: 124 FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP 183
L + + H + +VK GKP+P+ +L A K+ G + + E +V E+AP
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK---GGLKADEAVVIENAP 193
Query: 184 SGVLAAKNAGMSVVMVPDPRLDSSY--HSNADQLLSSL 219
GV A AG+ + V LD + AD L S+
Sbjct: 194 LGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSM 231
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 12/218 (5%)
Query: 7 KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQ---VF 63
+K + V+FDMDG+L ++ +++E ++ + D S + M A+ VF
Sbjct: 21 RKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHG--LDLSREEAYMHAGRTGASTINIVF 78
Query: 64 VEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARH 123
E G + + + L +P +E MPGA L++ + ++G+ V TGS
Sbjct: 79 QRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGS--GQ 136
Query: 124 FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP 183
L + + H + +VK GKP+P+ +L A K+ G + + E +V E+AP
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK---GGLKADEAVVIENAP 193
Query: 184 SGVLAAKNAGMSVVMVPDPRLDSSY--HSNADQLLSSL 219
GV A AG+ + V LD + AD L S+
Sbjct: 194 LGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSM 231
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 12/218 (5%)
Query: 7 KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQ---VF 63
+K + V+FDMDG+L ++ +++E ++ + D S + M A+ VF
Sbjct: 21 RKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHG--LDLSREEAYMHDGRTGASTINIVF 78
Query: 64 VEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARH 123
E G + + + L +P +E MPGA L++ + ++G+ V TGS
Sbjct: 79 QRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGS--GQ 136
Query: 124 FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP 183
L + + H + +VK GKP+P+ +L A K+ G + + E +V E+AP
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK---GGLKADEAVVIENAP 193
Query: 184 SGVLAAKNAGMSVVMVPDPRLDSS--YHSNADQLLSSL 219
GV A AG+ + V LD + AD L S+
Sbjct: 194 LGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSM 231
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 12/218 (5%)
Query: 7 KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQ---VF 63
+K + V+F+MDG+L ++ +++E ++ + D S + M + A+ VF
Sbjct: 21 RKKLKAVLFNMDGVLFNSMPYHSEAWHQVMKTHG--LDLSREEAYMHEGRTGASTINIVF 78
Query: 64 VEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARH 123
E G + + + L +P +E MPGA L++ + ++G+ V TGS
Sbjct: 79 QRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGS--GQ 136
Query: 124 FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP 183
L + + H + +VK GKP+P+ +L A K+ G + + E +V E+AP
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK---GGLKADEAVVIENAP 193
Query: 184 SGVLAAKNAGMSVVMVPDPRLDSSY--HSNADQLLSSL 219
GV A AG+ + V LD + AD L S+
Sbjct: 194 LGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSM 231
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 12/218 (5%)
Query: 7 KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQ---VF 63
+K + V+FDM+G+L ++ +++E ++ + D S + M + A+ VF
Sbjct: 21 RKKLKAVLFDMNGVLFNSMPYHSEAWHQVMKTHG--LDLSREEAYMHEGRTGASTINIVF 78
Query: 64 VEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARH 123
E G + + + L +P +E MPGA L++ + ++G+ V TGS
Sbjct: 79 QRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGS--GQ 136
Query: 124 FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP 183
L + + H + +VK GKP+P+ +L A K+ G + + E +V E+AP
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK---GGLKADEAVVIENAP 193
Query: 184 SGVLAAKNAGMSVVMVPDPRLDSSY--HSNADQLLSSL 219
GV A AG+ + V LD + AD L S+
Sbjct: 194 LGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSM 231
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 12/218 (5%)
Query: 7 KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQ---VF 63
+K + V+FDM G+L ++ +++E ++ + D S + M + A+ VF
Sbjct: 21 RKKLKAVLFDMAGVLFNSMPYHSEAWHQVMKTHG--LDLSREEAYMHEGRTGASTINIVF 78
Query: 64 VEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARH 123
E G + + + L +P +E MPGA L++ + ++G+ V TGS
Sbjct: 79 QRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGS--GQ 136
Query: 124 FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP 183
L + + H + +VK GKP+P+ +L A K+ G + + E +V E+AP
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK---GGLKADEAVVIENAP 193
Query: 184 SGVLAAKNAGMSVVMVPDPRLDSSY--HSNADQLLSSL 219
GV A AG+ + V LD + AD L S+
Sbjct: 194 LGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSM 231
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 6 SKKPITHVIFDMDGLLLDTEKFYTEV---QELILARYNKTFDWSLKAKMMGKKAIEAAQV 62
S +P T IFD+DG L T+ Y V +E + A W + K+ G +
Sbjct: 2 SLRPQTSFIFDLDGTL--TDSVYQNVAAWKEALDAENIPLAXWRIHRKI-GXSGGLXLKS 58
Query: 63 FVEETG--ISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSL 120
ETG I+D+ AE + + + L +PGA L+ L + + C+AT
Sbjct: 59 LSRETGXSITDE-QAERLSEKHAQAYERLQHQIIALPGAVELLETLDKENLKWCIATSGG 117
Query: 121 ARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFE 180
+ + + + ++ V R D V GKP PD+FLAAAK+ G PID E LV
Sbjct: 118 IDTATINLKALKLDINKINIVTRDD---VSYGKPDPDLFLAAAKKI-GAPID--ECLVIG 171
Query: 181 DAPSGVLAAKNAGMSVV 197
DA LAA+ + V
Sbjct: 172 DAIWDXLAARRCKATGV 188
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 14/193 (7%)
Query: 13 VIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMG---KKAIEAAQVFVEETGI 69
VIFD+DG++ DT +++ + I + + FD ++ G ++++E+ +F
Sbjct: 5 VIFDLDGVITDTAEYHFLAWKHIAEQIDIPFDRDXNERLKGISREESLESILIFGGAETK 64
Query: 70 SDKLSAEDFLVQREETLQTLFPT---SELMPGASHLIRHLHAKGIPMCVATGSLARHFEL 126
++ ++ Q L +L+PG L+ L + I + +A+ S
Sbjct: 65 YTNAEKQELXHRKNRDYQXLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSS---RNAP 121
Query: 127 KTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGV 186
K + + H +V D + +GKP PDIFL AA + P D I EDA +G+
Sbjct: 122 KILRRLAIIDDFHAIV--DPTTLAKGKPDPDIFLTAAAXLDVSPADCAAI---EDAEAGI 176
Query: 187 LAAKNAGMSVVMV 199
A K+AG V V
Sbjct: 177 SAIKSAGXFAVGV 189
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 14/193 (7%)
Query: 13 VIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDK 72
VIFD+DG++ DT + + + I A + D + G E+ + ++ G
Sbjct: 8 VIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGD 67
Query: 73 LSAEDF--LVQREETLQT----LFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFEL 126
++++ L R+ L + ++PG L+ L A+ I + +A+ SL L
Sbjct: 68 FNSQERAQLAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSLNAPTIL 127
Query: 127 KTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGV 186
+ RE F+ D ++K KP P+IFLAA G + Q + EDA +G+
Sbjct: 128 AALELREFFTFC-----ADASQLKNSKPDPEIFLAACA---GLGVPPQACIGIEDAQAGI 179
Query: 187 LAAKNAGMSVVMV 199
A +GM V +
Sbjct: 180 DAINASGMRSVGI 192
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 17/219 (7%)
Query: 6 SKKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVE 65
S + +IFD DG+L DTEK+Y + + L + + D + +G + V
Sbjct: 1 SNAXVEAIIFDXDGVLFDTEKYYYDRRASFLGQKGISIDHLPPSFFIGGNTKQ-----VW 55
Query: 66 ETGISDKLSAEDFLVQREE----TLQTLFPTSELM-PGASHLIRHLHAKGIPMCVATGSL 120
E + D+ D +EE P EL+ P ++ + ++G+ + +A+ S+
Sbjct: 56 ENILRDEYDKWDVSTLQEEYNTYKQNNPLPYKELIFPDVLKVLNEVKSQGLEIGLASSSV 115
Query: 121 ARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFE 180
+++R L V+ G+ E K+ KP+P+I+L A K+ + + L+ E
Sbjct: 116 KADIFRALEENR-LQGFFDIVLSGE--EFKESKPNPEIYLTALKQLN---VQASRALIIE 169
Query: 181 DAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSL 219
D+ G+ A A + V + D S A LL SL
Sbjct: 170 DSEKGIAAGVAADVEVWAIRDNEFGXD-QSAAKGLLDSL 207
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 102/203 (50%), Gaps = 29/203 (14%)
Query: 13 VIFDMDGLLLDTEKFYTEV-----QELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEET 67
V+FD+DG++ DT +++ +E+ + ++ F+ LK G ++ Q ++
Sbjct: 5 VLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLK----GVSREDSLQKILD-- 58
Query: 68 GISDK-LSAEDF--LVQRE-----ETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGS 119
++DK +SAE+F L +R+ + +Q + P +++ PG L++ L + I + +A+ S
Sbjct: 59 -LADKKVSAEEFKELAKRKNDNYVKMIQDVSP-ADVYPGILQLLKDLRSNKIKIALASAS 116
Query: 120 LARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVF 179
F L+ F + D EV KP+PDIF+AAA P +S +
Sbjct: 117 KNGPFLLERMNLTGYFDAI-----ADPAEVAASKPAPDIFIAAAHAVGVAPSES---IGL 168
Query: 180 EDAPSGVLAAKNAGMSVVMVPDP 202
ED+ +G+ A K++G + V P
Sbjct: 169 EDSQAGIQAIKDSGALPIGVGRP 191
>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus
Length = 247
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 13/220 (5%)
Query: 13 VIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDK 72
V+FD DG+L D+ + E I R+ G+ + D
Sbjct: 26 VLFDXDGVLFDSXPNHAESWHKIXKRFGFGLSREEAYXHEGRTGASTINIVSRRERGHDA 85
Query: 73 LSAEDFLVQREETLQ-TLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKH 131
E + + +T + P +E PGA ++ + ++G+ V TGS L H
Sbjct: 86 TEEEIKAIYQAKTEEFNKCPKAERXPGALEVLTKIKSEGLTPXVVTGSGQTSL-LDRLNH 144
Query: 132 R--ELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAA 189
+F V D VK GKP+P+ +L A K+ G E LV E+AP GV A
Sbjct: 145 NFPGIFQANLXVTAFD---VKYGKPNPEPYLXALKK---GGFKPNEALVIENAPLGVQAG 198
Query: 190 KNAGMSVVMVPDPRLDSSY--HSNADQLLSSLLGFNPKDW 227
AG+ + V L + + A+ L S FN K+W
Sbjct: 199 VAAGIFTIAVNTGPLHDNVLLNEGANLLFHSXPDFN-KNW 237
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 29/203 (14%)
Query: 13 VIFDMDGLLLDTEKFYTEV-----QELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEET 67
V+FD+DG++ D +++ +E+ + ++ F+ LK G ++ Q ++
Sbjct: 5 VLFDLDGVITDPAEYHFRAWKALAEEIGINGVDRQFNEQLK----GVSREDSLQKILD-- 58
Query: 68 GISDK-LSAEDF--LVQRE-----ETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGS 119
++DK +SAE+F L +R+ + +Q + P +++ PG L++ L + I + +A+ S
Sbjct: 59 -LADKKVSAEEFKELAKRKNDNYVKMIQDVSP-ADVYPGILQLLKDLRSNKIKIALASAS 116
Query: 120 LARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVF 179
F L+ F + D EV KP+PDIF+AAA P +S +
Sbjct: 117 KNGPFLLERMNLTGYFDAI-----ADPAEVAASKPAPDIFIAAAHAVGVAPSES---IGL 168
Query: 180 EDAPSGVLAAKNAGMSVVMVPDP 202
ED+ +G+ A K++G + V P
Sbjct: 169 EDSQAGIQAIKDSGALPIGVGRP 191
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 29/203 (14%)
Query: 13 VIFDMDGLLLDTEKFYTEV-----QELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEET 67
V+F +DG++ DT +++ +E+ + ++ F+ LK G ++ Q ++
Sbjct: 5 VLFXLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLK----GVSREDSLQKILD-- 58
Query: 68 GISDK-LSAEDF--LVQRE-----ETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGS 119
++DK +SAE+F L +R+ + +Q + P +++ PG L++ L + I + +A+ S
Sbjct: 59 -LADKKVSAEEFKELAKRKNDNYVKMIQDVSP-ADVYPGILQLLKDLRSNKIKIALASAS 116
Query: 120 LARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVF 179
F L+ F + D EV KP+PDIF+AAA P +S +
Sbjct: 117 KNGPFLLERMNLTGYFDAI-----ADPAEVAASKPAPDIFIAAAHAVGVAPSES---IGL 168
Query: 180 EDAPSGVLAAKNAGMSVVMVPDP 202
ED+ +G+ A K++G + V P
Sbjct: 169 EDSQAGIQAIKDSGALPIGVGRP 191
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 14/178 (7%)
Query: 9 PITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETG 68
P V+FD+DG+L+++E +V + +LA D + A + + ++ +
Sbjct: 27 PFDAVLFDLDGVLVESEGIIAQVWQSVLAERGLHLDLTEIAMYFTGQRFDGVLAYLAQQ- 85
Query: 69 ISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGS-LAR-HFEL 126
D + DFL E + GA+ +R L A G+P + + S R H +L
Sbjct: 86 -HDFVPPPDFLDVLETRFNAAMTGVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKL 144
Query: 127 KTQKHRELFSLMHHVVRGDDPEV--KQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDA 182
+ EL H+ DP +GKP PD++ AA++ I + +V ED+
Sbjct: 145 RVAGLTELAG--EHIY---DPSWVGGRGKPHPDLYTFAAQQLG---ILPERCVVIEDS 194
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 13/205 (6%)
Query: 13 VIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDK 72
+IFD DG+L+D+E +V+ +L + + + VE S
Sbjct: 7 IIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEXGERFAGXTWKNILLQVESEA-SIP 65
Query: 73 LSAEDFLVQREETL--QTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQK 130
LSA L+ + E L L +++ G + L P C+ + S + + K
Sbjct: 66 LSAS--LLDKSEKLLDXRLERDVKIIDGVKFALSRLTT---PRCICSNSSSHRLDXXLTK 120
Query: 131 HRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAK 190
H+ D + KP PDIFL A +F P ++V ED+ G+ A+
Sbjct: 121 VGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSP---DRVVVVEDSVHGIHGAR 177
Query: 191 NAGMSVVMVPDPRLDSSYHSNADQL 215
AG V+ +Y S+AD+L
Sbjct: 178 AAGXRVIGFTGA--SHTYPSHADRL 200
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 14/202 (6%)
Query: 6 SKKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVE 65
S I IFD+DG++ DT ++ + + D + G +E+ +E
Sbjct: 22 SNAMIEAFIFDLDGVITDTAYYHYMAWRKLAHKVGIDIDTKFNESLKGISRMESLDRILE 81
Query: 66 ETGISDKLSAEDFLVQREE------TLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGS 119
S E+ + EE +L +++++PG L+ + + I + +++ S
Sbjct: 82 FGNKKYSFSEEEKVRMAEEKNNYYVSLIDEITSNDILPGIESLLIDVKSNNIKIGLSSAS 141
Query: 120 LARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVF 179
L + F + D + K KP P+IFL +AK G ++ Q +
Sbjct: 142 KNAINVLNHLGISDKFDFI-----ADAGKCKNNKPHPEIFLMSAK---GLNVNPQNCIGI 193
Query: 180 EDAPSGVLAAKNAGMSVVMVPD 201
EDA +G+ A +A M V V +
Sbjct: 194 EDASAGIDAINSANMFSVGVGN 215
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 15/194 (7%)
Query: 15 FDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLS 74
FD+DG L +++ YT V +LA Y K F + K A +A E GI+
Sbjct: 9 FDIDGTLTNSQPAYTTVXREVLATYGKPFSPAQAQKTFPXAAEQAX----TELGIAAS-E 63
Query: 75 AEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHREL 134
+ F Q E+ + + EL PG + L L ++ + + + T R EL++
Sbjct: 64 FDHFQAQYEDVXASHYDQIELYPGITSLFEQLPSE-LRLGIVTSQ--RRNELESGXRSYP 120
Query: 135 FSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGM 194
F V D K+ KP P L A ++ P Q L D+ S A+ A +
Sbjct: 121 FXXRXAVTISADDTPKR-KPDPLPLLTALEKVNVAP---QNALFIGDSVSDEQTAQAANV 176
Query: 195 S---VVMVPDPRLD 205
V DP D
Sbjct: 177 DFGLAVWGXDPNAD 190
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 22/232 (9%)
Query: 4 VSSKKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKM---MGKKAIEAA 60
+S+ + I IFD DGLL+D+E + + + A D S + ++ +G +
Sbjct: 3 MSTPRQILAAIFDXDGLLIDSEPLWDRAELDVXASLG--VDISRRNELPDTLGLRIDXVV 60
Query: 61 QVFVEE---TGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVAT 117
++ G S + E + + + + T L+PG + +G+ + +A+
Sbjct: 61 DLWYARQPWNGPSRQEVVERVIAR---AISLVEETRPLLPGVREAVALCKEQGLLVGLAS 117
Query: 118 GSLARHFE--LKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQE 175
S E L R+ F + + + KP P ++L A + +D
Sbjct: 118 ASPLHXLEKVLTXFDLRDSFDALASAEK-----LPYSKPHPQVYLDCAAKLG---VDPLT 169
Query: 176 ILVFEDAPSGVLAAKNAGMSVVMVPDPRL-DSSYHSNADQLLSSLLGFNPKD 226
+ ED+ +G +A+K A ++VP P + A+ LSSL KD
Sbjct: 170 CVALEDSVNGXIASKAARXRSIVVPAPEAQNDPRFVLANVKLSSLTELTAKD 221
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 75/198 (37%), Gaps = 27/198 (13%)
Query: 13 VIFDMDGLLLDTEKFYTEVQELILARYN---------KTFDWSLKAKMMGKKAIEAAQVF 63
VI D+DG L DT + +LA T L A + G +
Sbjct: 22 VILDLDGTLADTPAAIATITAEVLAAMGTAVSRGAILSTVGRPLPASLAGLLGVPVEDPR 81
Query: 64 VEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARH 123
V E + E++ + ++ P L PG + L A G + +AT
Sbjct: 82 VAE-------ATEEYGRRFGAHVRAAGP-RLLYPGVLEGLDRLSAAGFRLAMAT----SK 129
Query: 124 FELKTQKHRELFSLMHH--VVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFED 181
E + EL L V+ GDD V++GKP PD+ L A+ I + +V D
Sbjct: 130 VEKAARAIAELTGLDTRLTVIAGDD-SVERGKPHPDMALHVARGLG---IPPERCVVIGD 185
Query: 182 APSGVLAAKNAGMSVVMV 199
+ AGM+V+ V
Sbjct: 186 GVPDAEMGRAAGMTVIGV 203
>pdb|1OM0|A Chain A, Crystal Structure Of Xylanase Inhibitor Protein (Xip-I)
From Wheat
pdb|1TA3|A Chain A, Crystal Structure Of Xylanase (Gh10) In Complex With
Inhibitor (Xip)
pdb|1TE1|A Chain A, Crystal Structure Of Family 11 Xylanase In Complex With
Inhibitor (xip-i)
Length = 274
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 103 IRHLHAKGIPMCVATGSLARHFELKTQKHR-ELFS-LMHHVVRGDDPEVKQGKPSPDIFL 160
I+H +KG+P+ ++ G + L + + +LF L + G P V +P D +L
Sbjct: 63 IKHCQSKGVPVSLSIGGYGTGYSLPSNRSALDLFDHLWNSYFGGSKPSVP--RPFGDAWL 120
Query: 161 AAAKRF--EGGPIDSQEILVFE 180
F G P D ++L E
Sbjct: 121 DGVDLFLEHGTPADRYDVLALE 142
>pdb|1N3H|A Chain A, Coupling Of Folding And Binding In The Ptb Domain Of The
Signaling Protein Shc
pdb|1OY2|A Chain A, Coupling Of Folding And Binding In The Ptb Domain Of The
Signaling Protein Shc
Length = 207
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 89 LFPTSELM-PGASHLIRHLHAKGIPMCVATGSLAR--HFELKTQKHRELFSLMHHVVRGD 145
L P ++M PG S+L+R++ CV R F +TQ RE SL+ V G
Sbjct: 39 LHPNDKVMGPGVSYLVRYMG------CVEVLQSMRALDFNTRTQVTREAISLVCEAVPGA 92
Query: 146 DPEVKQGKPS----PDIFLAAAKRFEGGPI 171
++ KP I + +F G PI
Sbjct: 93 KGATRRRKPCSRPLSSILGRSNLKFAGMPI 122
>pdb|1SHC|A Chain A, Shc Ptb Domain Complexed With A Trka Receptor
Phosphopeptide, Nmr, Minimized Average Structure
Length = 195
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 89 LFPTSELM-PGASHLIRHLHAKGIPMCVATGSLAR--HFELKTQKHRELFSLMHHVVRGD 145
L P ++M PG S+L+R++ CV R F +TQ RE SL+ V G
Sbjct: 27 LHPNDKVMGPGVSYLVRYMG------CVEVLQSMRALDFNTRTQVTREAISLVCEAVPGA 80
Query: 146 DPEVKQGKPS----PDIFLAAAKRFEGGPI 171
++ KP I + +F G PI
Sbjct: 81 KGATRRRKPCSRPLSSILGRSNLKFAGMPI 110
>pdb|2L1C|A Chain A, Shc-Ptb:biphosphorylated Integrin Beta3 Cytoplasmic Tail
Complex (1:1)
Length = 211
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 89 LFPTSELM-PGASHLIRHLHAKGIPMCVATGSLAR--HFELKTQKHRELFSLMHHVVRGD 145
L P ++M PG S+L+R++ CV R F +TQ RE SL+ V G
Sbjct: 43 LHPNDKVMGPGVSYLVRYMG------CVEVLQSMRALDFNTRTQVTREAISLVCEAVPGA 96
Query: 146 DPEVKQGKPS----PDIFLAAAKRFEGGPI 171
++ KP I + +F G PI
Sbjct: 97 KGATRRRKPCSRPLSSILGRSNLKFAGMPI 126
>pdb|2QLT|A Chain A, Crystal Structure Of An Isoform Of
Dl-Glycerol-3-Phosphatase, Rhr2p, From Saccharomyces
Cerevisiae
Length = 275
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 110 GIPMCVATGSLARH-FELKTQKHRELFSLMHHVVRGDDPE-------VKQGKPSPDIFLA 161
+ +C A +L + + + T R++ +++ PE VKQGKP P+ +L
Sbjct: 119 AVKLCNALNALPKEKWAVATSGTRDMAKKWFDILKIKRPEYFITANDVKQGKPHPEPYLK 178
Query: 162 AAKRFEGGPIDSQE-----ILVFED 181
G PI+ Q+ ++VFED
Sbjct: 179 GRNGL-GFPINEQDPSKSKVVVFED 202
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 26/194 (13%)
Query: 13 VIFDMDGLLLDTEK-----FYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEET 67
++FD+DG L+D+ K ++EL L Y D K G +A+ E
Sbjct: 6 ILFDLDGTLIDSAKDIALALEKTLKELGLEEYYP--DNVTKYIGGGVRAL-------LEK 56
Query: 68 GISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELK 127
+ DK E V R+ L+ ++ P + + L +KG + V + L E
Sbjct: 57 VLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKL----EEL 112
Query: 128 TQKHRELFSLMHH---VVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPS 184
++K ++ +L + +V GD + KPSP L + P ++ L+ D +
Sbjct: 113 SKKILDILNLSGYFDLIVGGD--TFGEKKPSPTPVLKTLEILGEEP---EKALIVGDTDA 167
Query: 185 GVLAAKNAGMSVVM 198
+ A K AG +
Sbjct: 168 DIEAGKRAGTKTAL 181
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 26/194 (13%)
Query: 13 VIFDMDGLLLDTEK-----FYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEET 67
++FD+DG L+D+ K ++EL L Y D K G +A+ E
Sbjct: 4 ILFDLDGTLIDSAKDIALALEKTLKELGLEEYYP--DNVTKYIGGGVRAL-------LEK 54
Query: 68 GISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELK 127
+ DK E V R+ L+ ++ P + + L +KG + V + L E
Sbjct: 55 VLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKL----EEL 110
Query: 128 TQKHRELFSLMHH---VVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPS 184
++K ++ +L + +V GD + KPSP L + P ++ L+ D +
Sbjct: 111 SKKILDILNLSGYFDLIVGGD--TFGEKKPSPTPVLKTLEILGEEP---EKALIVGDTDA 165
Query: 185 GVLAAKNAGMSVVM 198
+ A K AG +
Sbjct: 166 DIEAGKRAGTKTAL 179
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 148 EVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSV 196
E+K KP P+IF A E ID +E +D+ A+ G+S
Sbjct: 168 EMKMAKPEPEIFKAVT---EDAGIDPKETFFIDDSEINCKVAQELGIST 213
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 148 EVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSV 196
E+K KP P+IF A E ID +E +D+ A+ G+S
Sbjct: 168 EMKMAKPEPEIFKAVT---EDAGIDPKETFFIDDSEINCKVAQELGIST 213
>pdb|2W43|A Chain A, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
pdb|2W43|B Chain B, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
Length = 201
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMV 199
VK+ KPSP ++ ++ I ++E + V+ AKNAGM + V
Sbjct: 124 VKEYKPSPKVY-----KYFLDSIGAKEAFLVSSNAFDVIGAKNAGMRSIFV 169
>pdb|2W11|A Chain A, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
pdb|2W11|B Chain B, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
Length = 206
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMV 199
VK+ KPSP ++ ++ I ++E + V+ AKNAGM + V
Sbjct: 129 VKEYKPSPKVY-----KYFLDSIGAKEAFLVSSNAFDVIGAKNAGMRSIFV 174
>pdb|2P11|A Chain A, Crystal Structure Of A Putative Haloacid Dehalogenase-Like
Hydrolase (Bxe_b1342) From Burkholderia Xenovorans Lb400
At 2.20 A Resolution
pdb|2P11|B Chain B, Crystal Structure Of A Putative Haloacid Dehalogenase-Like
Hydrolase (Bxe_b1342) From Burkholderia Xenovorans Lb400
At 2.20 A Resolution
Length = 231
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 14 IFDMDGLLLDTEKFYTEVQELIL--------ARYNKTFDWSLKAKMMGKKAIEAAQVF-V 64
+FD D LLD + +++ ARY + F+ +L+ ++ + A Q + +
Sbjct: 15 LFDCDNTLLDNDHVLADLRAHXXREFGAQNSARYWEIFE-TLRTELGYADYLGALQRYRL 73
Query: 65 EETGISDKLSAEDFLVQREETLQTLFP-TSELMPGASHLIRHLHAKGIPMCVATGSL 120
E+ + L FL+ +P S + PGA + +RHL A+G + ++ G +
Sbjct: 74 EQPRDTRLLLXSSFLID--------YPFASRVYPGALNALRHLGARGPTVILSDGDV 122
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 83 EETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMH--- 139
E+ L + T LMP L+ LHA G + +A+G F + +E SL +
Sbjct: 167 EQILSQVRETLPLMPELPELVATLHAFGWKVAIASGG----FTYFSDYLKEQLSLDYAQS 222
Query: 140 ---HVVRGDDP-----EVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKN 191
+V G EV + DI L A++++ ++ + D + ++
Sbjct: 223 NTLEIVSGKLTGQVLGEVVSAQTKADILLTLAQQYD---VEIHNTVAVGDGANDLVMMAA 279
Query: 192 AGMSVVMVPDPRLDSSYHS 210
AG+ V P++++ +
Sbjct: 280 AGLGVAYHAKPKVEAKAQT 298
>pdb|2GO7|A Chain A, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|B Chain B, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|C Chain C, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|D Chain D, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
Length = 207
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 14/201 (6%)
Query: 11 THVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGIS 70
T I+D+DG LLD+ + E A+++ +D + + K +++ V V E
Sbjct: 5 TAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAE---D 61
Query: 71 DKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQK 130
L E R ++L L PGA ++ GI + T F + K
Sbjct: 62 RNLDVEVLNQVRAQSLAEKNAQVVLXPGAREVLAWADESGIQQFIYTHKGNNAFTIL--K 119
Query: 131 HRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAK 190
+ S ++ V+ KPSP+ AA + ++S D V A+
Sbjct: 120 DLGVESYFTEILTSQSGFVR--KPSPE---AATYLLDKYQLNSDNTYYIGDRTLDVEFAQ 174
Query: 191 NAGMSVVMVPDPRLDSSYHSN 211
N+G+ + L+S+Y N
Sbjct: 175 NSGIQSINF----LESTYEGN 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,032,258
Number of Sequences: 62578
Number of extensions: 279059
Number of successful extensions: 667
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 45
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)