Query 026543
Match_columns 237
No_of_seqs 151 out of 1114
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 09:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02940 riboflavin kinase 100.0 1.7E-35 3.6E-40 238.4 23.4 220 8-234 9-228 (382)
2 PRK10826 2-deoxyglucose-6-phos 100.0 4.1E-34 9E-39 216.0 21.1 211 8-225 5-218 (222)
3 PLN02770 haloacid dehalogenase 100.0 2.9E-34 6.2E-39 219.8 19.4 209 5-223 17-232 (248)
4 TIGR01422 phosphonatase phosph 100.0 9.5E-34 2.1E-38 218.1 20.4 208 10-225 2-251 (253)
5 COG0546 Gph Predicted phosphat 100.0 8.7E-34 1.9E-38 213.4 18.7 212 7-226 1-217 (220)
6 TIGR03351 PhnX-like phosphonat 100.0 8.8E-34 1.9E-38 214.1 18.6 208 10-224 1-217 (220)
7 PRK13288 pyrophosphatase PpaX; 100.0 6.4E-34 1.4E-38 213.9 16.7 205 9-226 2-210 (214)
8 PRK13226 phosphoglycolate phos 100.0 8.4E-34 1.8E-38 214.9 16.8 209 8-225 10-223 (229)
9 TIGR01449 PGP_bact 2-phosphogl 100.0 3E-33 6.5E-38 210.3 19.2 204 13-224 1-211 (213)
10 PLN03243 haloacid dehalogenase 100.0 2.8E-33 6E-38 214.5 18.9 209 9-226 23-234 (260)
11 PRK13478 phosphonoacetaldehyde 100.0 5E-33 1.1E-37 215.5 19.8 212 7-226 1-254 (267)
12 COG0637 Predicted phosphatase/ 100.0 1.7E-32 3.6E-37 205.9 20.0 208 9-222 1-212 (221)
13 PRK10563 6-phosphogluconate ph 100.0 4.6E-32 9.9E-37 204.9 21.6 207 7-224 1-210 (221)
14 PLN02575 haloacid dehalogenase 100.0 2E-32 4.3E-37 216.7 20.1 207 9-224 130-339 (381)
15 PRK11587 putative phosphatase; 100.0 1.6E-32 3.5E-37 206.7 18.8 202 9-225 2-206 (218)
16 TIGR02253 CTE7 HAD superfamily 100.0 5.9E-32 1.3E-36 204.4 18.8 205 10-222 2-220 (221)
17 PRK13223 phosphoglycolate phos 100.0 5.8E-32 1.3E-36 209.3 19.0 218 1-225 1-228 (272)
18 PLN02811 hydrolase 100.0 4.3E-31 9.3E-36 199.1 22.3 218 17-234 1-218 (220)
19 PRK10725 fructose-1-P/6-phosph 100.0 7.3E-31 1.6E-35 193.6 21.3 183 8-200 3-186 (188)
20 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 7.4E-31 1.6E-35 193.1 20.9 180 10-199 1-185 (185)
21 TIGR01990 bPGM beta-phosphoglu 100.0 5.3E-31 1.2E-35 193.9 20.0 179 12-200 1-185 (185)
22 TIGR01454 AHBA_synth_RP 3-amin 100.0 1.8E-31 4E-36 199.3 17.6 198 13-225 1-202 (205)
23 PRK13222 phosphoglycolate phos 100.0 6.2E-31 1.3E-35 199.5 20.4 211 8-226 4-221 (226)
24 PRK13225 phosphoglycolate phos 100.0 1.6E-31 3.4E-36 206.1 15.9 204 9-226 61-267 (273)
25 TIGR02254 YjjG/YfnB HAD superf 100.0 2.9E-30 6.3E-35 195.5 19.1 203 10-224 1-222 (224)
26 KOG2914 Predicted haloacid-hal 100.0 2.6E-29 5.6E-34 184.9 22.7 215 6-225 6-221 (222)
27 PRK09449 dUMP phosphatase; Pro 100.0 9.5E-30 2.1E-34 192.6 19.5 200 9-224 2-220 (224)
28 PLN02779 haloacid dehalogenase 100.0 1.7E-29 3.7E-34 196.7 20.4 213 8-228 38-274 (286)
29 PRK10748 flavin mononucleotide 100.0 8.7E-30 1.9E-34 194.0 15.4 211 1-225 1-237 (238)
30 PRK06698 bifunctional 5'-methy 100.0 1.3E-29 2.9E-34 209.9 16.5 207 8-226 239-453 (459)
31 PRK14988 GMP/IMP nucleotidase; 100.0 5.9E-29 1.3E-33 187.5 18.1 128 91-224 90-219 (224)
32 TIGR01428 HAD_type_II 2-haloal 100.0 7.9E-29 1.7E-33 184.1 18.2 181 10-204 1-196 (198)
33 PF13419 HAD_2: Haloacid dehal 100.0 2.7E-29 5.9E-34 183.0 15.2 175 13-199 1-176 (176)
34 PLN02919 haloacid dehalogenase 100.0 1.2E-28 2.6E-33 219.8 21.5 209 8-223 73-286 (1057)
35 TIGR02252 DREG-2 REG-2-like, H 100.0 1.9E-28 4.1E-33 182.8 18.7 178 11-198 1-203 (203)
36 TIGR01509 HAD-SF-IA-v3 haloaci 100.0 7.8E-27 1.7E-31 171.4 17.5 175 12-199 1-183 (183)
37 TIGR02247 HAD-1A3-hyp Epoxide 100.0 5.9E-27 1.3E-31 175.8 16.2 181 10-202 2-198 (211)
38 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 2.5E-26 5.5E-31 170.4 18.3 174 12-192 2-197 (197)
39 PRK09456 ?-D-glucose-1-phospha 99.9 6.8E-26 1.5E-30 168.3 20.6 178 11-204 1-189 (199)
40 COG1011 Predicted hydrolase (H 99.9 1.4E-26 3E-31 176.0 13.7 128 92-226 97-226 (229)
41 TIGR01993 Pyr-5-nucltdase pyri 99.9 6.2E-26 1.3E-30 166.6 14.3 170 11-199 1-184 (184)
42 PHA02597 30.2 hypothetical pro 99.9 2.4E-25 5.1E-30 165.3 15.6 188 10-224 2-196 (197)
43 KOG3085 Predicted hydrolase (H 99.9 1.3E-24 2.7E-29 160.6 16.0 193 5-204 2-217 (237)
44 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 3.9E-24 8.5E-29 152.6 17.1 154 12-193 1-154 (154)
45 TIGR00338 serB phosphoserine p 99.9 3.1E-24 6.7E-29 161.9 14.6 193 7-223 11-216 (219)
46 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 2.1E-24 4.6E-29 157.3 11.2 161 12-192 1-175 (175)
47 TIGR01691 enolase-ppase 2,3-di 99.9 2.9E-22 6.2E-27 149.3 20.7 204 10-221 1-219 (220)
48 PLN02954 phosphoserine phospha 99.9 6.3E-23 1.4E-27 155.3 13.8 196 8-224 10-221 (224)
49 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 9.4E-23 2E-27 151.9 11.9 176 9-202 3-192 (201)
50 TIGR00213 GmhB_yaeD D,D-heptos 99.9 1.5E-22 3.3E-27 147.3 12.5 126 93-223 25-175 (176)
51 PRK06769 hypothetical protein; 99.9 8.5E-23 1.8E-27 147.8 10.5 127 93-225 27-170 (173)
52 PRK08942 D,D-heptose 1,7-bisph 99.9 1.7E-22 3.8E-27 147.7 10.8 129 93-226 28-176 (181)
53 PRK11133 serB phosphoserine ph 99.9 1.7E-21 3.8E-26 153.0 15.2 187 7-217 107-304 (322)
54 KOG3109 Haloacid dehalogenase- 99.9 1.1E-20 2.4E-25 135.1 16.3 201 7-222 12-223 (244)
55 TIGR01672 AphA HAD superfamily 99.9 5.9E-21 1.3E-25 143.3 15.0 147 12-204 65-215 (237)
56 TIGR01656 Histidinol-ppas hist 99.9 2.2E-21 4.8E-26 136.9 10.8 105 93-202 26-147 (147)
57 TIGR01685 MDP-1 magnesium-depe 99.9 4.7E-22 1E-26 142.3 4.8 108 92-204 43-161 (174)
58 TIGR01261 hisB_Nterm histidino 99.8 1.2E-20 2.5E-25 134.4 10.6 105 93-204 28-151 (161)
59 PRK09552 mtnX 2-hydroxy-3-keto 99.8 1.3E-19 2.8E-24 136.6 14.3 190 11-226 4-212 (219)
60 PRK13582 thrH phosphoserine ph 99.8 1.8E-19 3.8E-24 134.6 14.8 192 10-226 1-195 (205)
61 TIGR01662 HAD-SF-IIIA HAD-supe 99.8 7.6E-20 1.6E-24 127.0 10.8 98 93-200 24-131 (132)
62 TIGR01452 PGP_euk phosphoglyco 99.8 2.7E-19 5.9E-24 139.4 10.7 122 95-222 144-279 (279)
63 cd01427 HAD_like Haloacid deha 99.8 5.4E-19 1.2E-23 123.4 11.1 103 91-199 21-139 (139)
64 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 4.9E-18 1.1E-22 125.1 15.8 159 12-194 3-183 (188)
65 COG0560 SerB Phosphoserine pho 99.8 5.9E-18 1.3E-22 125.8 15.0 172 8-199 3-186 (212)
66 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.8 1.5E-19 3.2E-24 138.9 6.7 127 95-225 121-253 (257)
67 TIGR02137 HSK-PSP phosphoserin 99.8 6.9E-17 1.5E-21 119.5 18.3 160 11-201 2-172 (203)
68 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 5.4E-18 1.2E-22 121.5 11.0 99 95-198 43-160 (166)
69 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.8 4E-17 8.6E-22 121.7 15.6 123 73-200 67-198 (202)
70 TIGR03333 salvage_mtnX 2-hydro 99.8 2.2E-17 4.8E-22 123.9 13.9 188 13-225 2-207 (214)
71 PRK11009 aphA acid phosphatase 99.7 5.5E-17 1.2E-21 121.8 13.9 99 92-204 112-215 (237)
72 PRK05446 imidazole glycerol-ph 99.7 3E-17 6.5E-22 129.9 13.0 103 93-202 29-150 (354)
73 TIGR01488 HAD-SF-IB Haloacid D 99.7 5.1E-17 1.1E-21 118.5 13.2 97 92-192 71-177 (177)
74 TIGR01668 YqeG_hyp_ppase HAD s 99.7 3.7E-17 8.1E-22 118.0 12.1 99 93-205 42-141 (170)
75 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.7 8.8E-18 1.9E-22 128.6 8.3 121 95-222 122-249 (249)
76 PRK10444 UMP phosphatase; Prov 99.7 8.2E-17 1.8E-21 122.8 12.0 72 148-222 169-245 (248)
77 PF00702 Hydrolase: haloacid d 99.7 2.9E-17 6.2E-22 123.5 8.9 90 93-193 126-215 (215)
78 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 1.2E-16 2.6E-21 109.8 9.7 91 94-191 29-126 (128)
79 COG4229 Predicted enolase-phos 99.7 3.8E-15 8.3E-20 103.7 16.9 122 92-220 101-224 (229)
80 PLN02645 phosphoglycolate phos 99.7 1.4E-17 2.9E-22 131.6 5.1 121 102-225 178-306 (311)
81 COG2179 Predicted hydrolase of 99.7 3.8E-16 8.3E-21 107.5 10.2 95 95-204 47-142 (175)
82 PRK11590 hypothetical protein; 99.7 6.9E-15 1.5E-19 110.1 15.9 180 9-197 5-200 (211)
83 TIGR01670 YrbI-phosphatas 3-de 99.7 5.9E-17 1.3E-21 115.1 3.9 99 102-218 36-134 (154)
84 PRK10530 pyridoxal phosphate ( 99.6 9E-16 1.9E-20 119.6 8.7 118 96-221 139-260 (272)
85 PRK09484 3-deoxy-D-manno-octul 99.6 2.9E-16 6.3E-21 114.7 4.6 98 102-217 56-153 (183)
86 COG0647 NagD Predicted sugar p 99.6 2.7E-15 5.8E-20 114.1 9.6 76 150-228 187-267 (269)
87 PF06888 Put_Phosphatase: Puta 99.6 7.9E-14 1.7E-18 104.3 15.0 174 12-203 2-199 (234)
88 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.6 4.7E-15 1E-19 113.4 8.3 99 96-201 140-242 (242)
89 PF13242 Hydrolase_like: HAD-h 99.6 4.1E-15 8.8E-20 92.4 5.5 69 151-222 2-75 (75)
90 PHA02530 pseT polynucleotide k 99.6 2.3E-14 5.1E-19 113.2 10.9 107 93-203 186-299 (300)
91 PRK08238 hypothetical protein; 99.5 1.6E-13 3.5E-18 113.5 14.1 98 93-203 71-168 (479)
92 TIGR01456 CECR5 HAD-superfamil 99.5 2.4E-14 5.2E-19 113.6 8.9 77 150-226 230-320 (321)
93 TIGR01460 HAD-SF-IIA Haloacid 99.5 6.2E-14 1.3E-18 106.7 10.4 50 150-202 185-236 (236)
94 COG0241 HisB Histidinol phosph 99.5 4.1E-13 8.9E-18 95.8 13.0 128 93-223 30-173 (181)
95 TIGR01686 FkbH FkbH-like domai 99.5 6.7E-14 1.5E-18 111.2 9.5 90 95-195 32-125 (320)
96 smart00577 CPDc catalytic doma 99.5 2.9E-14 6.3E-19 100.6 5.6 94 92-195 43-137 (148)
97 TIGR01544 HAD-SF-IE haloacid d 99.5 7.2E-13 1.6E-17 101.3 13.5 97 92-192 119-230 (277)
98 PRK01158 phosphoglycolate phos 99.5 1.1E-14 2.5E-19 110.6 3.5 65 149-219 152-216 (230)
99 PF12689 Acid_PPase: Acid Phos 99.5 8.1E-14 1.8E-18 99.0 6.8 103 92-204 43-155 (169)
100 KOG1615 Phosphoserine phosphat 99.5 3.4E-13 7.3E-18 95.2 9.7 192 9-224 15-223 (227)
101 TIGR01545 YfhB_g-proteo haloac 99.5 2.5E-12 5.4E-17 95.9 14.9 121 73-198 73-200 (210)
102 TIGR02726 phenyl_P_delta pheny 99.5 6.9E-14 1.5E-18 100.1 6.2 98 102-217 42-139 (169)
103 TIGR02244 HAD-IG-Ncltidse HAD 99.5 1.4E-11 3E-16 97.2 19.3 107 92-202 182-325 (343)
104 TIGR01663 PNK-3'Pase polynucle 99.4 1.2E-12 2.6E-17 108.9 11.2 96 95-194 198-305 (526)
105 COG0561 Cof Predicted hydrolas 99.4 1.8E-13 3.9E-18 106.1 6.0 64 149-218 184-247 (264)
106 KOG2882 p-Nitrophenyl phosphat 99.4 1.2E-12 2.7E-17 98.9 9.5 76 148-226 219-303 (306)
107 TIGR01482 SPP-subfamily Sucros 99.4 6.8E-14 1.5E-18 106.0 2.1 66 149-220 144-209 (225)
108 PRK15126 thiamin pyrimidine py 99.4 1.6E-13 3.4E-18 106.9 2.7 60 149-214 183-242 (272)
109 TIGR01487 SPP-like sucrose-pho 99.4 1.6E-12 3.6E-17 97.7 8.0 64 150-219 143-206 (215)
110 PRK10513 sugar phosphate phosp 99.4 1.5E-13 3.2E-18 107.0 1.7 66 149-220 191-256 (270)
111 KOG3040 Predicted sugar phosph 99.3 1.8E-12 3.9E-17 92.6 5.7 74 150-226 178-256 (262)
112 KOG3120 Predicted haloacid deh 99.3 7.1E-11 1.5E-15 85.3 13.3 176 9-202 12-212 (256)
113 PRK10976 putative hydrolase; P 99.3 4.3E-13 9.4E-18 104.2 1.6 64 149-218 185-250 (266)
114 PF09419 PGP_phosphatase: Mito 99.3 3.8E-11 8.1E-16 85.1 11.0 96 95-202 60-166 (168)
115 PTZ00445 p36-lilke protein; Pr 99.3 2.1E-11 4.6E-16 88.3 9.1 107 94-203 75-208 (219)
116 PF12710 HAD: haloacid dehalog 99.3 2.3E-11 5E-16 89.8 9.2 87 97-190 92-192 (192)
117 PLN02887 hydrolase family prot 99.3 8.5E-13 1.8E-17 111.2 1.5 66 149-220 502-567 (580)
118 COG1778 Low specificity phosph 99.3 2.4E-12 5.3E-17 87.8 2.2 95 103-215 44-138 (170)
119 TIGR01533 lipo_e_P4 5'-nucleot 99.3 2.3E-10 5E-15 87.6 13.3 86 92-189 116-204 (266)
120 PRK00192 mannosyl-3-phosphogly 99.3 2.8E-10 6.1E-15 88.7 14.0 47 154-206 190-237 (273)
121 PRK03669 mannosyl-3-phosphogly 99.2 3.4E-11 7.3E-16 93.7 8.0 44 149-195 182-228 (271)
122 PF08645 PNK3P: Polynucleotide 99.2 3.8E-11 8.1E-16 85.4 6.3 98 95-196 30-152 (159)
123 COG4359 Uncharacterized conser 99.2 2.1E-09 4.4E-14 75.6 13.5 156 12-193 5-179 (220)
124 TIGR02463 MPGP_rel mannosyl-3- 99.2 2.2E-09 4.8E-14 81.1 14.8 43 152-197 177-219 (221)
125 TIGR00099 Cof-subfamily Cof su 99.2 3.3E-11 7.2E-16 93.1 4.7 65 150-220 184-248 (256)
126 TIGR01512 ATPase-IB2_Cd heavy 99.1 1.3E-10 2.9E-15 98.5 6.5 112 92-223 360-475 (536)
127 PF06941 NT5C: 5' nucleotidase 99.1 4E-10 8.6E-15 83.1 7.8 171 11-224 2-183 (191)
128 TIGR01684 viral_ppase viral ph 99.1 5E-10 1.1E-14 85.6 7.7 58 96-156 148-205 (301)
129 TIGR02471 sucr_syn_bact_C sucr 99.1 2.6E-10 5.6E-15 87.0 5.7 60 148-213 153-212 (236)
130 PF08282 Hydrolase_3: haloacid 99.0 1.9E-11 4.1E-16 94.0 -1.0 65 151-221 183-247 (254)
131 TIGR01525 ATPase-IB_hvy heavy 99.0 2.8E-10 6.1E-15 97.1 6.0 111 92-222 382-495 (556)
132 TIGR01485 SPP_plant-cyano sucr 99.0 3.6E-09 7.9E-14 81.4 10.7 51 148-201 161-211 (249)
133 TIGR01486 HAD-SF-IIB-MPGP mann 99.0 3.4E-08 7.4E-13 76.3 14.3 50 150-205 172-223 (256)
134 KOG2630 Enolase-phosphatase E- 99.0 4.8E-08 1E-12 71.3 13.5 118 93-222 122-248 (254)
135 TIGR01511 ATPase-IB1_Cu copper 98.9 2.5E-09 5.4E-14 91.3 7.1 109 93-222 404-514 (562)
136 TIGR02461 osmo_MPG_phos mannos 98.9 2.4E-09 5.2E-14 80.9 5.8 43 152-197 179-223 (225)
137 TIGR02251 HIF-SF_euk Dullard-l 98.9 7E-10 1.5E-14 79.3 2.6 99 92-200 40-139 (162)
138 TIGR01522 ATPase-IIA2_Ca golgi 98.9 2.3E-09 4.9E-14 96.1 6.3 123 93-224 527-668 (884)
139 COG4087 Soluble P-type ATPase 98.9 9.1E-09 2E-13 68.2 7.0 121 93-229 29-149 (152)
140 PHA03398 viral phosphatase sup 98.8 2.3E-08 5.1E-13 76.7 8.5 86 96-186 150-266 (303)
141 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.8 1.3E-08 2.7E-13 78.0 6.6 93 92-194 22-116 (242)
142 PRK14502 bifunctional mannosyl 98.8 6.7E-07 1.5E-11 76.3 15.9 45 151-198 610-656 (694)
143 COG4996 Predicted phosphatase 98.7 4.1E-08 8.8E-13 65.2 6.4 93 92-191 39-134 (164)
144 PRK10671 copA copper exporting 98.7 3.1E-08 6.7E-13 88.6 7.6 110 93-222 649-760 (834)
145 PF13344 Hydrolase_6: Haloacid 98.7 1.3E-07 2.7E-12 62.0 8.4 85 94-194 14-100 (101)
146 smart00775 LNS2 LNS2 domain. T 98.7 2.8E-07 6E-12 65.5 10.3 98 95-195 28-141 (157)
147 PRK10187 trehalose-6-phosphate 98.7 2.5E-08 5.4E-13 77.3 5.3 66 151-226 171-240 (266)
148 PLN02382 probable sucrose-phos 98.7 1.6E-07 3.6E-12 77.0 9.9 50 151-205 172-224 (413)
149 COG3700 AphA Acid phosphatase 98.7 9.4E-08 2E-12 67.0 6.9 97 94-202 114-213 (237)
150 TIGR01675 plant-AP plant acid 98.7 1.1E-06 2.4E-11 65.7 13.0 105 92-203 118-225 (229)
151 PF03767 Acid_phosphat_B: HAD 98.6 5.2E-08 1.1E-12 73.6 4.5 101 93-202 114-224 (229)
152 PLN02177 glycerol-3-phosphate 98.6 3.7E-06 8E-11 70.4 15.7 173 10-197 22-212 (497)
153 TIGR01116 ATPase-IIA1_Ca sarco 98.6 1.8E-07 3.9E-12 84.4 7.7 124 93-223 536-679 (917)
154 PF11019 DUF2608: Protein of u 98.6 1.2E-05 2.5E-10 61.7 16.2 110 92-204 79-213 (252)
155 PRK14010 potassium-transportin 98.5 2.8E-07 6.2E-12 79.5 7.3 104 93-216 440-543 (673)
156 COG2217 ZntA Cation transport 98.5 3E-07 6.6E-12 79.6 6.8 102 93-214 536-637 (713)
157 PRK12702 mannosyl-3-phosphogly 98.5 1.2E-05 2.7E-10 62.0 14.6 51 152-204 206-256 (302)
158 PRK11033 zntA zinc/cadmium/mer 98.5 6.1E-07 1.3E-11 79.1 8.5 101 93-215 567-667 (741)
159 TIGR01680 Veg_Stor_Prot vegeta 98.5 3.5E-06 7.7E-11 64.2 11.4 107 92-203 143-252 (275)
160 PRK01122 potassium-transportin 98.5 3.7E-07 8E-12 78.9 6.8 104 93-216 444-547 (679)
161 TIGR01497 kdpB K+-transporting 98.4 4.7E-07 1E-11 78.2 6.4 103 93-215 445-547 (675)
162 PF05116 S6PP: Sucrose-6F-phos 98.4 6.7E-07 1.5E-11 68.6 5.9 47 151-201 162-208 (247)
163 PTZ00174 phosphomannomutase; P 98.4 5.2E-08 1.1E-12 74.8 -0.2 44 150-200 184-231 (247)
164 TIGR01517 ATPase-IIB_Ca plasma 98.4 7E-07 1.5E-11 80.9 6.2 118 93-217 578-710 (941)
165 TIGR01524 ATPase-IIIB_Mg magne 98.3 9.8E-07 2.1E-11 79.1 6.4 115 93-216 514-642 (867)
166 PRK15122 magnesium-transportin 98.3 9.5E-07 2.1E-11 79.4 6.3 115 93-216 549-677 (903)
167 PRK10517 magnesium-transportin 98.3 9.1E-07 2E-11 79.5 5.9 115 93-216 549-677 (902)
168 PF05761 5_nucleotid: 5' nucle 98.3 4.5E-06 9.7E-11 68.8 9.0 107 93-203 182-327 (448)
169 TIGR01647 ATPase-IIIA_H plasma 98.3 9.4E-07 2E-11 78.2 5.3 113 93-215 441-573 (755)
170 TIGR01523 ATPase-IID_K-Na pota 98.2 2E-06 4.3E-11 78.5 6.2 116 93-217 645-787 (1053)
171 COG5663 Uncharacterized conser 98.1 3.5E-05 7.6E-10 53.8 8.9 112 73-204 51-165 (194)
172 PLN02645 phosphoglycolate phos 98.1 4.2E-05 9.1E-10 60.8 9.7 89 95-198 45-136 (311)
173 COG2503 Predicted secreted aci 98.0 3.9E-05 8.5E-10 56.9 8.4 84 92-187 120-207 (274)
174 COG0474 MgtA Cation transport 98.0 1.2E-05 2.6E-10 72.6 6.6 101 92-196 545-661 (917)
175 KOG0202 Ca2+ transporting ATPa 98.0 1E-05 2.3E-10 69.8 5.9 114 93-215 583-717 (972)
176 TIGR00685 T6PP trehalose-phosp 98.0 3E-06 6.6E-11 65.0 2.1 66 154-226 167-239 (244)
177 PLN02423 phosphomannomutase 98.0 8.6E-07 1.9E-11 67.9 -0.9 45 150-202 185-233 (245)
178 TIGR01106 ATPase-IIC_X-K sodiu 98.0 1.7E-05 3.6E-10 72.5 6.3 119 93-218 567-726 (997)
179 KOG0207 Cation transport ATPas 97.9 2.6E-05 5.7E-10 68.0 6.8 86 93-195 722-807 (951)
180 PF05152 DUF705: Protein of un 97.9 0.00016 3.5E-09 55.2 9.0 87 95-186 143-260 (297)
181 TIGR01484 HAD-SF-IIB HAD-super 97.8 2.5E-05 5.4E-10 58.2 4.5 46 149-197 158-203 (204)
182 TIGR02250 FCP1_euk FCP1-like p 97.8 5.1E-05 1.1E-09 53.8 5.5 85 92-189 56-143 (156)
183 TIGR01652 ATPase-Plipid phosph 97.8 5.2E-05 1.1E-09 69.9 6.2 128 93-226 630-819 (1057)
184 PF08235 LNS2: LNS2 (Lipin/Ned 97.7 0.00083 1.8E-08 47.3 9.7 97 94-195 27-141 (157)
185 TIGR01689 EcbF-BcbF capsule bi 97.6 0.00045 9.8E-09 46.9 7.6 30 94-123 24-53 (126)
186 TIGR01657 P-ATPase-V P-type AT 97.6 0.00033 7.1E-09 64.7 9.1 42 93-135 655-696 (1054)
187 TIGR01658 EYA-cons_domain eyes 97.6 0.0063 1.4E-07 45.6 13.8 64 132-204 196-261 (274)
188 COG5610 Predicted hydrolase (H 97.5 0.00031 6.7E-09 57.0 6.8 100 95-199 100-201 (635)
189 TIGR02245 HAD_IIID1 HAD-superf 97.5 0.0012 2.5E-08 48.5 8.7 95 93-194 44-150 (195)
190 COG0647 NagD Predicted sugar p 97.5 0.00093 2E-08 51.5 8.4 87 93-195 23-112 (269)
191 PLN03190 aminophospholipid tra 97.4 0.00017 3.7E-09 66.7 4.7 52 173-226 871-922 (1178)
192 KOG2470 Similar to IMP-GMP spe 97.4 0.00048 1E-08 54.0 6.1 106 93-201 239-376 (510)
193 TIGR01494 ATPase_P-type ATPase 97.3 0.0015 3.3E-08 55.6 8.6 83 93-195 346-428 (499)
194 PLN02499 glycerol-3-phosphate 97.2 0.0094 2E-07 49.7 11.5 174 9-201 7-198 (498)
195 TIGR01452 PGP_euk phosphoglyco 97.2 0.0027 6E-08 49.7 8.1 88 95-197 19-108 (279)
196 COG4030 Uncharacterized protei 97.0 0.065 1.4E-06 39.9 13.0 40 93-134 82-121 (315)
197 COG3769 Predicted hydrolase (H 96.9 0.013 2.7E-07 43.4 8.9 21 175-195 211-231 (274)
198 KOG2961 Predicted hydrolase (H 96.9 0.0075 1.6E-07 41.7 7.2 34 171-204 137-171 (190)
199 KOG1618 Predicted phosphatase 96.9 0.0047 1E-07 48.1 6.9 54 150-204 268-344 (389)
200 KOG3128 Uncharacterized conser 96.9 0.0082 1.8E-07 45.2 7.8 129 56-192 100-247 (298)
201 COG2216 KdpB High-affinity K+ 96.8 0.0028 6E-08 52.6 5.3 92 93-204 446-537 (681)
202 PF05822 UMPH-1: Pyrimidine 5' 96.8 0.015 3.2E-07 44.1 8.7 96 92-192 88-198 (246)
203 PF06189 5-nucleotidase: 5'-nu 96.7 0.014 3.1E-07 44.3 8.4 76 110-204 186-262 (264)
204 KOG3107 Predicted haloacid deh 96.7 0.037 8E-07 44.2 10.8 45 155-203 410-454 (468)
205 KOG0204 Calcium transporting A 96.6 0.0031 6.7E-08 55.3 4.4 99 93-204 646-766 (1034)
206 PF03031 NIF: NLI interacting 96.6 0.003 6.6E-08 45.0 3.7 96 93-201 35-131 (159)
207 KOG0206 P-type ATPase [General 96.4 0.056 1.2E-06 49.9 11.4 29 92-120 649-677 (1151)
208 KOG0210 P-type ATPase [Inorgan 96.2 0.0055 1.2E-07 52.7 3.8 51 173-225 781-831 (1051)
209 TIGR01457 HAD-SF-IIA-hyp2 HAD- 96.1 0.05 1.1E-06 41.9 8.5 51 93-144 16-69 (249)
210 PRK14501 putative bifunctional 96.0 0.0029 6.2E-08 56.4 1.4 66 151-225 654-719 (726)
211 COG3882 FkbH Predicted enzyme 96.0 0.065 1.4E-06 44.4 8.8 92 94-194 255-348 (574)
212 PRK10444 UMP phosphatase; Prov 95.3 0.17 3.7E-06 39.0 8.4 50 95-144 18-69 (248)
213 COG4502 5'(3')-deoxyribonucleo 95.2 0.015 3.2E-07 39.7 2.1 88 90-204 64-156 (180)
214 PLN02580 trehalose-phosphatase 95.1 0.012 2.7E-07 47.8 1.8 70 152-229 299-376 (384)
215 KOG4549 Magnesium-dependent ph 94.7 0.23 4.9E-06 33.4 6.5 84 92-185 42-134 (144)
216 TIGR01460 HAD-SF-IIA Haloacid 94.6 0.38 8.2E-06 36.7 8.8 86 93-194 13-101 (236)
217 PLN02205 alpha,alpha-trehalose 94.6 0.015 3.3E-07 52.5 1.3 72 151-229 759-844 (854)
218 TIGR01484 HAD-SF-IIB HAD-super 94.4 0.025 5.4E-07 42.0 1.9 26 12-37 1-27 (204)
219 KOG2134 Polynucleotide kinase 94.4 0.077 1.7E-06 42.7 4.5 97 95-195 105-228 (422)
220 TIGR02726 phenyl_P_delta pheny 94.3 0.025 5.4E-07 40.8 1.5 18 8-25 5-22 (169)
221 TIGR01458 HAD-SF-IIA-hyp3 HAD- 94.0 0.072 1.6E-06 41.2 3.7 50 95-144 22-73 (257)
222 PLN02580 trehalose-phosphatase 93.7 0.19 4.1E-06 41.1 5.7 32 93-125 140-171 (384)
223 TIGR01456 CECR5 HAD-superfamil 93.2 0.48 1E-05 38.0 7.3 89 92-198 14-109 (321)
224 PRK14501 putative bifunctional 93.1 0.24 5.2E-06 44.4 6.0 31 95-125 515-546 (726)
225 KOG2469 IMP-GMP specific 5'-nu 92.9 0.25 5.4E-06 40.1 5.2 106 96-204 200-337 (424)
226 PF13580 SIS_2: SIS domain; PD 92.8 1.4 3.1E-05 30.4 8.4 102 95-200 20-137 (138)
227 PLN02205 alpha,alpha-trehalose 92.8 0.28 6.1E-06 44.6 5.9 31 95-125 617-648 (854)
228 KOG0203 Na+/K+ ATPase, alpha s 91.4 0.029 6.2E-07 49.5 -1.8 40 93-133 589-628 (1019)
229 PF03031 NIF: NLI interacting 91.4 0.1 2.2E-06 37.1 1.3 16 11-26 1-16 (159)
230 TIGR02468 sucrsPsyn_pln sucros 90.8 2.7 5.9E-05 39.2 9.8 48 150-200 952-1001(1050)
231 KOG2882 p-Nitrophenyl phosphat 90.2 5.7 0.00012 31.3 9.7 95 93-201 37-133 (306)
232 KOG3040 Predicted sugar phosph 89.5 1.9 4.1E-05 32.0 6.3 48 95-142 24-73 (262)
233 KOG2116 Protein involved in pl 89.1 1.3 2.9E-05 38.4 6.1 95 97-195 561-672 (738)
234 KOG0209 P-type ATPase [Inorgan 89.0 1.7 3.7E-05 39.0 6.8 29 92-120 673-701 (1160)
235 PLN03017 trehalose-phosphatase 88.0 0.4 8.6E-06 39.0 2.3 69 153-228 282-357 (366)
236 TIGR00685 T6PP trehalose-phosp 87.9 0.31 6.6E-06 37.4 1.6 15 10-24 3-17 (244)
237 PLN02151 trehalose-phosphatase 87.7 0.25 5.4E-06 40.0 1.0 67 153-227 268-342 (354)
238 PF06014 DUF910: Bacterial pro 87.2 0.49 1.1E-05 27.6 1.8 27 158-191 6-32 (62)
239 CHL00162 thiG thiamin biosynth 86.8 9.5 0.00021 29.4 8.8 99 94-204 118-222 (267)
240 PF05690 ThiG: Thiazole biosyn 86.7 9.5 0.00021 29.0 8.6 98 93-202 103-206 (247)
241 PRK10513 sugar phosphate phosp 86.4 1.5 3.3E-05 34.0 4.8 40 95-135 21-60 (270)
242 PTZ00445 p36-lilke protein; Pr 86.4 0.62 1.4E-05 34.6 2.4 16 8-23 41-56 (219)
243 PF02358 Trehalose_PPase: Treh 85.9 1.5 3.2E-05 33.4 4.4 61 154-218 165-233 (235)
244 PLN03017 trehalose-phosphatase 85.8 0.44 9.6E-06 38.7 1.5 12 11-22 112-123 (366)
245 PLN03063 alpha,alpha-trehalose 85.7 1.4 3E-05 40.1 4.7 15 10-24 507-521 (797)
246 PLN02151 trehalose-phosphatase 85.3 0.66 1.4E-05 37.6 2.2 12 11-22 99-110 (354)
247 PRK00192 mannosyl-3-phosphogly 85.3 1.5 3.4E-05 34.1 4.3 41 96-137 23-63 (273)
248 KOG3189 Phosphomannomutase [Li 84.8 0.83 1.8E-05 33.5 2.3 28 11-38 12-39 (252)
249 TIGR02461 osmo_MPG_phos mannos 84.7 1.8 3.8E-05 32.8 4.3 40 96-136 17-56 (225)
250 KOG0323 TFIIF-interacting CTD 84.6 3.3 7.1E-05 36.3 6.2 80 92-183 199-280 (635)
251 COG4850 Uncharacterized conser 84.0 6.6 0.00014 31.3 7.0 85 92-188 194-293 (373)
252 TIGR01487 SPP-like sucrose-pho 83.8 1.8 3.8E-05 32.4 3.9 40 95-135 19-58 (215)
253 PRK01158 phosphoglycolate phos 82.8 2.1 4.5E-05 32.3 4.0 41 95-136 21-61 (230)
254 COG0731 Fe-S oxidoreductases [ 82.7 2.7 5.8E-05 33.2 4.5 34 92-125 90-124 (296)
255 PF04413 Glycos_transf_N: 3-De 82.6 4.5 9.8E-05 29.6 5.5 72 101-186 109-184 (186)
256 TIGR02463 MPGP_rel mannosyl-3- 82.0 2.4 5.3E-05 31.8 4.1 36 99-135 21-56 (221)
257 TIGR02329 propionate_PrpR prop 81.0 12 0.00026 32.4 8.3 88 98-202 85-172 (526)
258 COG5083 SMP2 Uncharacterized p 80.9 1.1 2.4E-05 37.0 1.9 25 171-195 491-516 (580)
259 TIGR00099 Cof-subfamily Cof su 80.9 2.8 6.1E-05 32.3 4.2 40 95-135 17-56 (256)
260 PRK12702 mannosyl-3-phosphogly 80.7 3.3 7.1E-05 32.7 4.4 41 95-136 19-59 (302)
261 PRK15126 thiamin pyrimidine py 80.3 2.7 5.7E-05 32.8 3.9 40 95-135 20-59 (272)
262 PRK10976 putative hydrolase; P 80.1 2.7 5.9E-05 32.5 3.9 40 95-135 20-59 (266)
263 COG1877 OtsB Trehalose-6-phosp 79.5 1.2 2.6E-05 34.6 1.6 47 154-203 182-231 (266)
264 PF03332 PMM: Eukaryotic phosp 79.4 5.3 0.00011 30.0 4.9 43 99-143 1-43 (220)
265 PRK00994 F420-dependent methyl 79.3 26 0.00056 26.8 9.6 82 109-201 30-117 (277)
266 PF06437 ISN1: IMP-specific 5' 79.1 7.7 0.00017 31.7 6.0 17 9-25 146-162 (408)
267 PF08282 Hydrolase_3: haloacid 78.8 4.4 9.6E-05 30.6 4.7 40 95-135 16-55 (254)
268 TIGR01486 HAD-SF-IIB-MPGP mann 78.7 3.7 8.1E-05 31.6 4.2 37 98-135 20-56 (256)
269 smart00577 CPDc catalytic doma 78.7 1.4 3.1E-05 30.8 1.8 15 11-25 3-17 (148)
270 KOG0205 Plasma membrane H+-tra 78.4 3.9 8.5E-05 35.9 4.4 98 94-195 492-606 (942)
271 KOG1618 Predicted phosphatase 78.3 9.9 0.00021 30.3 6.2 88 93-198 50-144 (389)
272 COG2896 MoaA Molybdenum cofact 77.2 17 0.00037 29.2 7.4 62 73-134 43-112 (322)
273 PRK10530 pyridoxal phosphate ( 77.1 4 8.6E-05 31.6 4.0 40 95-135 21-60 (272)
274 TIGR02251 HIF-SF_euk Dullard-l 77.0 1.5 3.2E-05 31.4 1.4 15 11-25 2-16 (162)
275 TIGR01482 SPP-subfamily Sucros 76.5 4.3 9.3E-05 30.4 4.0 39 95-134 16-54 (225)
276 cd04728 ThiG Thiazole synthase 76.3 33 0.00072 26.4 9.3 98 93-204 103-208 (248)
277 COG0561 Cof Predicted hydrolas 76.0 4.9 0.00011 31.1 4.2 41 95-136 21-61 (264)
278 TIGR02250 FCP1_euk FCP1-like p 75.5 2.1 4.5E-05 30.4 1.9 18 9-26 5-22 (156)
279 PRK10886 DnaA initiator-associ 75.2 31 0.00067 25.6 8.2 107 95-205 26-148 (196)
280 PRK15424 propionate catabolism 75.0 22 0.00048 30.9 8.1 88 98-202 95-182 (538)
281 PRK11840 bifunctional sulfur c 74.6 43 0.00094 27.0 10.8 99 93-204 177-282 (326)
282 PF02358 Trehalose_PPase: Treh 74.2 2.7 5.9E-05 31.9 2.4 12 14-25 1-12 (235)
283 PF06506 PrpR_N: Propionate ca 73.3 9.7 0.00021 27.5 4.9 93 94-203 58-153 (176)
284 PRK03669 mannosyl-3-phosphogly 72.9 6.5 0.00014 30.6 4.2 38 97-135 27-64 (271)
285 PHA02530 pseT polynucleotide k 71.8 11 0.00024 29.7 5.4 16 10-25 158-173 (300)
286 PF14336 DUF4392: Domain of un 71.4 22 0.00047 28.2 6.8 37 96-132 62-98 (291)
287 PRK00208 thiG thiazole synthas 71.3 45 0.00098 25.7 9.3 96 94-204 104-208 (250)
288 COG4483 Uncharacterized protei 70.5 6.7 0.00014 23.0 2.7 26 159-191 7-32 (68)
289 COG0761 lytB 4-Hydroxy-3-methy 70.2 41 0.0009 26.5 7.7 44 154-204 225-268 (294)
290 COG2022 ThiG Uncharacterized e 69.8 47 0.001 25.4 8.7 100 93-204 110-215 (262)
291 COG3882 FkbH Predicted enzyme 69.7 2.7 5.9E-05 35.3 1.5 14 10-23 222-235 (574)
292 PF05761 5_nucleotid: 5' nucle 68.9 7 0.00015 33.0 3.7 20 7-26 9-28 (448)
293 PRK13762 tRNA-modifying enzyme 68.4 9.8 0.00021 30.6 4.4 31 92-122 140-170 (322)
294 COG0019 LysA Diaminopimelate d 68.2 26 0.00056 29.2 6.8 31 171-201 94-126 (394)
295 PF01993 MTD: methylene-5,6,7, 68.2 44 0.00095 25.6 7.3 82 109-201 29-116 (276)
296 PF02350 Epimerase_2: UDP-N-ac 68.0 9 0.00019 31.2 4.2 90 105-202 2-100 (346)
297 TIGR00262 trpA tryptophan synt 66.7 59 0.0013 25.3 9.0 99 93-202 123-229 (256)
298 KOG0780 Signal recognition par 65.8 63 0.0014 26.9 8.2 50 136-190 182-231 (483)
299 TIGR02826 RNR_activ_nrdG3 anae 65.2 14 0.0003 26.0 4.1 45 95-145 73-117 (147)
300 PTZ00174 phosphomannomutase; P 64.9 12 0.00025 28.8 4.1 31 95-125 23-53 (247)
301 COG4821 Uncharacterized protei 63.2 61 0.0013 24.2 8.4 101 98-204 26-142 (243)
302 COG0809 QueA S-adenosylmethion 62.5 12 0.00027 29.9 3.8 104 100-220 189-300 (348)
303 COG0378 HypB Ni2+-binding GTPa 62.3 26 0.00056 26.0 5.1 68 149-224 22-92 (202)
304 PLN02951 Molybderin biosynthes 61.0 73 0.0016 26.3 8.2 49 73-121 90-147 (373)
305 TIGR00236 wecB UDP-N-acetylglu 60.9 57 0.0012 26.5 7.7 99 99-202 16-119 (365)
306 PLN03064 alpha,alpha-trehalose 57.2 5.9 0.00013 36.7 1.4 45 151-195 765-815 (934)
307 TIGR03365 Bsubt_queE 7-cyano-7 56.9 12 0.00025 28.7 2.8 30 93-122 83-112 (238)
308 PF06437 ISN1: IMP-specific 5' 56.9 14 0.00031 30.2 3.3 43 156-203 351-402 (408)
309 KOG1605 TFIIF-interacting CTD 55.6 10 0.00023 29.4 2.3 93 93-195 130-223 (262)
310 TIGR01485 SPP_plant-cyano sucr 55.1 21 0.00046 27.3 4.0 37 97-134 24-60 (249)
311 PRK08005 epimerase; Validated 55.1 88 0.0019 23.5 10.0 100 93-201 89-192 (210)
312 PRK14021 bifunctional shikimat 54.7 1.5E+02 0.0032 26.0 10.0 31 172-202 269-304 (542)
313 cd05007 SIS_Etherase N-acetylm 54.4 1E+02 0.0022 24.0 11.3 100 102-205 42-157 (257)
314 PF04413 Glycos_transf_N: 3-De 54.2 84 0.0018 23.0 8.7 91 97-204 35-129 (186)
315 PRK13125 trpA tryptophan synth 54.2 98 0.0021 23.8 9.4 98 96-202 115-216 (244)
316 TIGR02495 NrdG2 anaerobic ribo 54.2 30 0.00065 25.2 4.6 30 93-122 73-102 (191)
317 TIGR02668 moaA_archaeal probab 53.6 1.1E+02 0.0024 24.2 9.1 30 92-121 66-96 (302)
318 PF04123 DUF373: Domain of unk 53.5 19 0.00041 29.3 3.5 25 159-188 90-114 (344)
319 KOG2469 IMP-GMP specific 5'-nu 53.0 8.6 0.00019 31.6 1.6 19 7-25 24-42 (424)
320 PF06901 FrpC: RTX iron-regula 53.0 12 0.00026 27.4 2.1 15 11-25 59-73 (271)
321 PF02606 LpxK: Tetraacyldisacc 52.9 60 0.0013 26.3 6.3 28 95-122 50-77 (326)
322 PRK00652 lpxK tetraacyldisacch 52.8 1.1E+02 0.0023 24.8 7.7 26 96-121 65-90 (325)
323 cd01480 vWA_collagen_alpha_1-V 52.3 43 0.00093 24.3 5.1 73 155-227 90-180 (186)
324 PF13700 DUF4158: Domain of un 51.5 86 0.0019 22.3 7.0 80 31-111 71-150 (166)
325 PRK10916 ADP-heptose:LPS hepto 50.9 1.3E+02 0.0029 24.3 9.5 37 156-201 252-288 (348)
326 PRK10187 trehalose-6-phosphate 50.5 29 0.00062 27.1 4.1 32 94-125 36-68 (266)
327 PRK09479 glpX fructose 1,6-bis 50.4 1.3E+02 0.0029 24.1 8.7 86 95-194 165-250 (319)
328 TIGR00288 conserved hypothetic 49.3 68 0.0015 23.0 5.4 30 12-41 26-55 (160)
329 PLN02887 hydrolase family prot 49.2 32 0.0007 30.3 4.5 40 94-134 325-364 (580)
330 COG5190 FCP1 TFIIF-interacting 47.9 50 0.0011 27.4 5.1 84 93-186 251-334 (390)
331 KOG1605 TFIIF-interacting CTD 47.0 4.2 9E-05 31.6 -1.0 17 9-25 88-104 (262)
332 COG1834 N-Dimethylarginine dim 47.0 48 0.001 25.9 4.6 99 100-201 41-162 (267)
333 smart00540 LEM in nuclear memb 47.0 32 0.00069 18.6 2.7 31 100-130 9-39 (44)
334 cd06537 CIDE_N_B CIDE_N domain 46.9 16 0.00035 22.6 1.7 16 11-26 40-55 (81)
335 cd01516 FBPase_glpX Bacterial 46.6 36 0.00078 27.0 4.0 31 95-125 162-192 (309)
336 smart00266 CAD Domains present 45.8 17 0.00038 22.1 1.7 17 10-26 38-54 (74)
337 cd06539 CIDE_N_A CIDE_N domain 45.8 17 0.00038 22.3 1.7 18 10-27 40-57 (78)
338 TIGR02109 PQQ_syn_pqqE coenzym 45.6 75 0.0016 25.9 6.0 29 92-120 63-91 (358)
339 PF14213 DUF4325: Domain of un 45.1 44 0.00096 20.1 3.5 30 11-40 18-47 (74)
340 KOG3189 Phosphomannomutase [Li 44.8 78 0.0017 23.7 5.1 51 92-145 26-76 (252)
341 PRK14502 bifunctional mannosyl 44.2 36 0.00078 30.5 4.1 38 96-134 435-472 (694)
342 KOG0208 Cation transport ATPas 44.0 25 0.00055 32.7 3.1 45 93-138 704-748 (1140)
343 PF03808 Glyco_tran_WecB: Glyc 43.9 1.2E+02 0.0026 21.8 7.7 78 95-183 33-111 (172)
344 PRK05301 pyrroloquinoline quin 43.8 82 0.0018 25.9 6.0 29 92-120 72-100 (378)
345 PRK12388 fructose-1,6-bisphosp 43.6 42 0.00091 26.8 3.9 31 95-125 162-192 (321)
346 cd05014 SIS_Kpsf KpsF-like pro 42.9 31 0.00066 23.1 2.9 29 95-123 59-87 (128)
347 PRK12415 fructose 1,6-bisphosp 42.3 42 0.00091 26.9 3.8 31 95-125 163-193 (322)
348 CHL00200 trpA tryptophan synth 42.2 1.7E+02 0.0036 22.9 9.3 104 94-202 128-233 (263)
349 COG0337 AroB 3-dehydroquinate 41.3 2E+02 0.0044 23.7 7.9 101 96-201 18-128 (360)
350 PRK03692 putative UDP-N-acetyl 41.1 1.7E+02 0.0036 22.6 7.7 80 100-190 95-176 (243)
351 cd06831 PLPDE_III_ODC_like_AZI 40.9 2.1E+02 0.0046 23.8 8.1 16 102-117 51-66 (394)
352 KOG2832 TFIIF-interacting CTD 40.7 64 0.0014 26.5 4.6 82 93-184 213-294 (393)
353 PRK13789 phosphoribosylamine-- 40.3 1.5E+02 0.0032 25.1 7.0 26 17-42 69-94 (426)
354 cd05008 SIS_GlmS_GlmD_1 SIS (S 40.2 41 0.0009 22.3 3.2 28 95-122 58-85 (126)
355 TIGR03470 HpnH hopanoid biosyn 40.0 35 0.00075 27.4 3.2 30 92-121 82-111 (318)
356 TIGR00640 acid_CoA_mut_C methy 39.5 39 0.00085 23.2 3.0 22 98-119 41-62 (132)
357 cd01615 CIDE_N CIDE_N domain, 39.4 25 0.00054 21.7 1.7 17 10-26 40-56 (78)
358 KOG0391 SNF2 family DNA-depend 39.4 1.9E+02 0.0041 28.4 7.7 90 99-201 1265-1354(1958)
359 cd06536 CIDE_N_ICAD CIDE_N dom 39.3 25 0.00054 21.8 1.7 16 11-26 43-58 (80)
360 PRK01395 V-type ATP synthase s 38.7 66 0.0014 21.1 3.8 27 175-202 5-31 (104)
361 PRK02947 hypothetical protein; 38.6 1.8E+02 0.0039 22.4 9.4 39 162-203 98-143 (246)
362 PRK00147 queA S-adenosylmethio 38.6 42 0.00092 27.3 3.4 18 100-117 187-204 (342)
363 TIGR00682 lpxK tetraacyldisacc 38.6 2.1E+02 0.0045 23.1 7.5 27 96-122 44-70 (311)
364 PRK13790 phosphoribosylamine-- 38.6 1.1E+02 0.0023 25.4 5.9 52 16-70 27-81 (379)
365 PRK15317 alkyl hydroperoxide r 38.5 2.6E+02 0.0057 24.2 10.4 30 172-201 210-242 (517)
366 PF03332 PMM: Eukaryotic phosp 38.3 31 0.00068 26.0 2.5 41 160-202 164-208 (220)
367 PRK10017 colanic acid biosynth 37.9 2.5E+02 0.0055 23.8 9.6 88 98-203 261-356 (426)
368 PRK10076 pyruvate formate lyas 37.6 42 0.00091 25.2 3.1 30 93-122 49-79 (213)
369 PF10113 Fibrillarin_2: Fibril 37.6 95 0.0021 26.1 5.1 47 155-204 207-257 (505)
370 PF09269 DUF1967: Domain of un 37.2 30 0.00064 20.7 1.8 22 158-182 44-65 (69)
371 PRK13361 molybdenum cofactor b 37.1 2E+02 0.0044 23.2 7.1 49 73-121 45-102 (329)
372 KOG0208 Cation transport ATPas 37.1 1.7E+02 0.0036 27.8 7.0 91 94-194 647-744 (1140)
373 TIGR00330 glpX fructose-1,6-bi 37.0 58 0.0013 26.0 3.8 30 95-124 162-191 (321)
374 TIGR03568 NeuC_NnaA UDP-N-acet 36.7 1.8E+02 0.004 23.8 7.0 34 171-204 92-128 (365)
375 PLN02591 tryptophan synthase 36.2 2.1E+02 0.0045 22.3 8.3 102 95-203 116-221 (250)
376 PRK13717 conjugal transfer pro 35.4 19 0.00041 24.4 0.8 16 8-23 43-58 (128)
377 cd06538 CIDE_N_FSP27 CIDE_N do 35.3 31 0.00068 21.3 1.7 16 11-26 40-55 (79)
378 COG1058 CinA Predicted nucleot 35.3 72 0.0016 24.8 4.0 48 154-204 21-71 (255)
379 COG1663 LpxK Tetraacyldisaccha 35.2 1.7E+02 0.0038 23.8 6.3 28 95-122 62-89 (336)
380 TIGR00715 precor6x_red precorr 34.7 14 0.00031 28.6 0.2 60 157-227 187-252 (256)
381 PF08620 RPAP1_C: RPAP1-like, 34.7 15 0.00032 22.4 0.3 9 14-22 4-12 (73)
382 PRK13352 thiamine biosynthesis 34.6 2.8E+02 0.0061 23.4 8.2 51 72-122 139-190 (431)
383 PF01380 SIS: SIS domain SIS d 34.2 60 0.0013 21.6 3.3 30 94-123 64-93 (131)
384 PF09949 DUF2183: Uncharacteri 33.9 72 0.0016 20.7 3.4 31 156-191 52-83 (100)
385 PRK14129 heat shock protein Hs 33.9 41 0.00088 22.0 2.1 18 9-26 18-35 (105)
386 cd05710 SIS_1 A subgroup of th 33.7 58 0.0013 21.7 3.1 28 95-122 59-86 (120)
387 TIGR03595 Obg_CgtA_exten Obg f 33.1 64 0.0014 19.3 2.8 21 159-182 45-65 (69)
388 PLN02588 glycerol-3-phosphate 32.9 20 0.00044 30.7 0.8 18 10-27 50-67 (525)
389 TIGR03127 RuMP_HxlB 6-phospho 32.4 60 0.0013 23.3 3.2 29 95-123 84-112 (179)
390 TIGR02471 sucr_syn_bact_C sucr 32.3 81 0.0017 23.8 4.0 29 106-135 26-54 (236)
391 PF03320 FBPase_glpX: Bacteria 32.3 19 0.00041 28.5 0.6 32 95-126 162-193 (309)
392 PF01297 TroA: Periplasmic sol 31.8 2E+02 0.0044 22.0 6.2 38 97-134 186-223 (256)
393 PF13604 AAA_30: AAA domain; P 31.7 2.1E+02 0.0045 21.0 8.0 26 155-183 106-131 (196)
394 cd00886 MogA_MoaB MogA_MoaB fa 31.7 1.4E+02 0.0031 20.9 4.9 46 154-202 20-70 (152)
395 TIGR00113 queA S-adenosylmethi 31.4 39 0.00084 27.5 2.1 18 100-117 188-205 (344)
396 cd06533 Glyco_transf_WecG_TagA 31.1 2E+02 0.0044 20.6 7.2 75 99-183 35-109 (171)
397 cd04906 ACT_ThrD-I_1 First of 31.0 84 0.0018 19.4 3.3 25 97-121 53-77 (85)
398 cd01137 PsaA Metal binding pro 31.0 1.3E+02 0.0029 23.7 5.1 39 97-135 213-251 (287)
399 COG0541 Ffh Signal recognition 30.9 3.4E+02 0.0073 23.2 7.6 101 94-200 138-247 (451)
400 PF05240 APOBEC_C: APOBEC-like 30.5 54 0.0012 18.7 2.0 22 97-118 2-23 (55)
401 cd01766 Ufm1 Urm1-like ubiquit 30.4 98 0.0021 18.8 3.2 40 152-194 25-64 (82)
402 COG1964 Predicted Fe-S oxidore 30.4 2.9E+02 0.0063 23.6 6.9 31 92-122 120-151 (475)
403 KOG1798 DNA polymerase epsilon 30.2 1.9E+02 0.0042 28.9 6.4 16 10-25 928-943 (2173)
404 cd04795 SIS SIS domain. SIS (S 29.9 66 0.0014 19.5 2.7 23 95-117 59-81 (87)
405 smart00052 EAL Putative diguan 29.9 2.3E+02 0.0051 21.0 6.6 88 98-196 134-227 (241)
406 TIGR03278 methan_mark_10 putat 29.8 3.4E+02 0.0074 22.9 7.9 28 93-120 85-113 (404)
407 PRK02308 uvsE putative UV dama 29.0 2E+02 0.0044 23.0 5.8 58 149-222 115-175 (303)
408 COG5426 Uncharacterized membra 29.0 2.5E+02 0.0053 21.0 6.6 85 92-183 27-120 (254)
409 PF02784 Orn_Arg_deC_N: Pyrido 28.9 2E+02 0.0044 22.0 5.7 72 100-192 33-104 (251)
410 PF02254 TrkA_N: TrkA-N domain 28.9 1.7E+02 0.0036 19.0 9.3 25 174-198 90-114 (116)
411 cd02071 MM_CoA_mut_B12_BD meth 28.8 1.8E+02 0.0039 19.4 8.9 86 101-197 18-106 (122)
412 COG2099 CobK Precorrin-6x redu 28.7 2.8E+02 0.0062 21.6 8.3 100 94-202 112-231 (257)
413 PRK02228 V-type ATP synthase s 28.5 1.2E+02 0.0026 19.6 3.8 25 175-200 2-26 (100)
414 TIGR02666 moaA molybdenum cofa 28.4 3.2E+02 0.0068 22.0 7.2 30 92-121 69-100 (334)
415 PRK08745 ribulose-phosphate 3- 28.4 2.7E+02 0.0058 21.2 10.1 102 93-202 93-201 (223)
416 KOG2900 Biotin synthase [Coenz 28.3 1.3E+02 0.0029 23.3 4.3 80 93-195 150-229 (380)
417 COG0602 NrdG Organic radical a 28.3 79 0.0017 23.8 3.2 31 93-123 82-112 (212)
418 PF12242 Eno-Rase_NADH_b: NAD( 28.2 84 0.0018 19.4 2.7 31 172-202 38-73 (78)
419 PLN00135 malate dehydrogenase 28.0 2E+02 0.0043 23.2 5.6 61 111-182 102-165 (309)
420 TIGR00190 thiC thiamine biosyn 28.0 3.5E+02 0.0077 22.7 6.9 49 73-121 137-186 (423)
421 PLN02423 phosphomannomutase 27.9 1E+02 0.0022 23.7 3.8 29 95-124 25-53 (245)
422 COG3785 Uncharacterized conser 27.7 46 0.001 21.7 1.6 20 8-27 26-45 (116)
423 cd01948 EAL EAL domain. This d 27.7 2.6E+02 0.0056 20.8 6.3 88 98-196 133-226 (240)
424 TIGR00177 molyb_syn molybdenum 27.3 2.1E+02 0.0046 19.8 5.1 45 155-202 28-75 (144)
425 cd00763 Bacterial_PFK Phosphof 27.1 3.4E+02 0.0073 22.0 7.3 98 100-202 20-124 (317)
426 COG0378 HypB Ni2+-binding GTPa 27.1 2.7E+02 0.0059 20.8 7.4 75 99-183 30-106 (202)
427 PF02571 CbiJ: Precorrin-6x re 26.7 32 0.0007 26.6 0.9 120 93-225 112-246 (249)
428 cd05013 SIS_RpiR RpiR-like pro 26.7 82 0.0018 21.0 3.0 27 96-122 73-99 (139)
429 PF08484 Methyltransf_14: C-me 26.6 1.6E+02 0.0035 21.0 4.4 46 95-143 53-99 (160)
430 COG0381 WecB UDP-N-acetylgluco 26.5 2.2E+02 0.0049 23.7 5.6 96 100-204 20-127 (383)
431 PF02017 CIDE-N: CIDE-N domain 26.3 50 0.0011 20.4 1.5 16 11-26 41-56 (78)
432 PRK13937 phosphoheptose isomer 26.2 90 0.002 22.8 3.2 29 94-122 117-145 (188)
433 TIGR03840 TMPT_Se_Te thiopurin 26.2 2.8E+02 0.006 20.8 5.9 47 152-202 17-65 (213)
434 PRK11145 pflA pyruvate formate 26.1 71 0.0015 24.4 2.8 29 93-121 81-110 (246)
435 COG1877 OtsB Trehalose-6-phosp 26.0 1.3E+02 0.0029 23.6 4.1 33 93-125 39-72 (266)
436 TIGR03140 AhpF alkyl hydropero 25.9 4.4E+02 0.0095 22.9 10.7 30 171-200 210-242 (515)
437 PRK08883 ribulose-phosphate 3- 25.9 2.9E+02 0.0064 20.9 8.8 102 93-202 89-197 (220)
438 COG3010 NanE Putative N-acetyl 25.8 3E+02 0.0064 20.8 6.4 75 140-221 100-178 (229)
439 COG2044 Predicted peroxiredoxi 25.8 1.1E+02 0.0025 20.6 3.2 27 93-119 58-84 (120)
440 cd00885 cinA Competence-damage 25.7 2E+02 0.0044 20.7 4.9 47 155-204 20-69 (170)
441 PLN02257 phosphoribosylamine-- 25.4 2.6E+02 0.0056 23.8 6.1 13 58-70 104-116 (434)
442 PF04273 DUF442: Putative phos 25.3 1E+02 0.0023 20.4 3.1 18 187-204 51-68 (110)
443 cd05005 SIS_PHI Hexulose-6-pho 25.2 92 0.002 22.4 3.1 29 95-123 87-115 (179)
444 COG1180 PflA Pyruvate-formate 24.8 80 0.0017 24.6 2.8 31 94-124 96-126 (260)
445 PF10740 DUF2529: Protein of u 24.7 1E+02 0.0022 22.3 3.1 29 172-200 81-115 (172)
446 TIGR02195 heptsyl_trn_II lipop 24.7 3.7E+02 0.0079 21.5 9.5 84 98-202 195-279 (334)
447 PF10307 DUF2410: Hypothetical 24.6 3E+02 0.0065 20.5 8.1 87 98-192 58-152 (197)
448 COG1922 WecG Teichoic acid bio 24.4 3.5E+02 0.0075 21.1 9.5 77 96-183 94-171 (253)
449 cd05006 SIS_GmhA Phosphoheptos 24.4 89 0.0019 22.4 2.9 29 94-122 112-140 (177)
450 smart00481 POLIIIAc DNA polyme 24.4 1.3E+02 0.0027 17.4 3.1 23 98-120 16-38 (67)
451 PF02879 PGM_PMM_II: Phosphogl 24.1 1.3E+02 0.0027 19.3 3.3 33 102-134 13-46 (104)
452 TIGR03151 enACPred_II putative 24.0 3.8E+02 0.0083 21.5 8.7 90 101-204 100-194 (307)
453 COG4275 Uncharacterized conser 24.0 37 0.00079 23.1 0.7 34 9-43 44-77 (143)
454 PRK10422 lipopolysaccharide co 23.9 3.9E+02 0.0086 21.6 9.2 87 97-202 202-290 (352)
455 TIGR02667 moaB_proteo molybden 23.8 2.1E+02 0.0047 20.3 4.7 47 155-204 23-74 (163)
456 cd04861 LigD_Pol_like LigD_Pol 23.8 1.7E+02 0.0037 22.3 4.3 34 8-41 96-132 (227)
457 KOG4388 Hormone-sensitive lipa 23.7 2.4E+02 0.0053 25.1 5.5 24 164-190 462-486 (880)
458 TIGR01756 LDH_protist lactate 23.7 3.7E+02 0.008 21.7 6.4 71 101-183 91-168 (313)
459 PF07859 Abhydrolase_3: alpha/ 23.7 72 0.0016 23.3 2.4 26 157-185 54-82 (211)
460 PLN00112 malate dehydrogenase 23.6 2.3E+02 0.005 24.2 5.4 72 100-182 206-283 (444)
461 TIGR00441 gmhA phosphoheptose 23.6 93 0.002 21.8 2.8 28 95-122 91-118 (154)
462 PRK13256 thiopurine S-methyltr 23.6 3.2E+02 0.007 20.8 5.8 48 151-202 25-74 (226)
463 KOG1359 Glycine C-acetyltransf 23.5 1.5E+02 0.0032 23.8 3.9 101 95-204 272-379 (417)
464 cd01454 vWA_norD_type norD typ 23.3 2.6E+02 0.0056 19.8 5.1 52 153-204 84-153 (174)
465 cd04862 PaeLigD_Pol_like PaeLi 23.2 1.8E+02 0.0039 22.2 4.3 35 7-41 95-132 (227)
466 TIGR02483 PFK_mixed phosphofru 23.2 4E+02 0.0088 21.6 6.6 44 157-202 81-126 (324)
467 TIGR02494 PFLE_PFLC glycyl-rad 23.2 86 0.0019 24.7 2.8 29 93-121 136-165 (295)
468 PF01990 ATP-synt_F: ATP synth 23.2 1.3E+02 0.0029 19.0 3.2 24 176-200 1-24 (95)
469 KOG2826 Actin-related protein 23.0 57 0.0012 24.8 1.6 16 8-23 29-44 (301)
470 PRK08649 inosine 5-monophospha 23.0 4.4E+02 0.0096 21.9 10.4 95 98-204 119-219 (368)
471 COG2227 UbiG 2-polyprenyl-3-me 23.0 1.9E+02 0.0041 22.4 4.3 44 136-186 123-166 (243)
472 TIGR02778 ligD_pol DNA polymer 22.9 1.8E+02 0.0039 22.5 4.3 34 8-41 112-148 (245)
473 PRK01424 S-adenosylmethionine: 22.8 69 0.0015 26.2 2.1 18 100-117 209-226 (366)
474 COG0036 Rpe Pentose-5-phosphat 22.7 3.5E+02 0.0076 20.6 9.5 102 93-201 92-198 (220)
475 cd05017 SIS_PGI_PMI_1 The memb 22.5 1.1E+02 0.0023 20.3 2.8 25 95-119 55-79 (119)
476 COG4161 ArtP ABC-type arginine 22.4 1.7E+02 0.0036 21.3 3.7 65 95-164 176-241 (242)
477 cd05015 SIS_PGI_1 Phosphogluco 22.4 2.9E+02 0.0062 19.5 6.1 29 172-200 108-137 (158)
478 cd04865 LigD_Pol_like_2 LigD_P 22.3 1.9E+02 0.0041 22.1 4.3 34 8-41 97-133 (228)
479 PRK06203 aroB 3-dehydroquinate 22.3 4.7E+02 0.01 21.9 10.7 91 110-202 42-146 (389)
480 COG1171 IlvA Threonine dehydra 22.2 4.5E+02 0.0097 21.7 8.3 106 98-222 59-172 (347)
481 smart00455 RBD Raf-like Ras-bi 22.0 1E+02 0.0022 18.4 2.3 27 150-179 17-43 (70)
482 TIGR01758 MDH_euk_cyt malate d 21.8 2.7E+02 0.0059 22.5 5.4 55 111-176 119-173 (324)
483 TIGR00696 wecB_tagA_cpsF bacte 21.7 3.3E+02 0.007 19.8 7.2 74 99-183 37-110 (177)
484 PLN02334 ribulose-phosphate 3- 21.5 3.6E+02 0.0079 20.3 10.0 100 96-202 101-204 (229)
485 TIGR02193 heptsyl_trn_I lipopo 21.5 4.2E+02 0.009 21.0 8.9 26 177-202 257-282 (319)
486 PF03102 NeuB: NeuB family; I 21.5 1.9E+02 0.0041 22.3 4.2 93 98-197 101-198 (241)
487 KOG0781 Signal recognition par 21.4 3.7E+02 0.008 23.4 6.0 118 98-219 454-585 (587)
488 PRK02261 methylaspartate mutas 21.2 2.9E+02 0.0063 19.0 9.3 90 99-199 20-118 (137)
489 PF04007 DUF354: Protein of un 21.1 3.6E+02 0.0078 22.0 5.9 94 99-204 16-114 (335)
490 TIGR02201 heptsyl_trn_III lipo 21.1 4.4E+02 0.0096 21.2 9.1 41 153-202 248-288 (344)
491 TIGR02493 PFLA pyruvate format 20.8 1.3E+02 0.0028 22.7 3.3 28 93-120 76-104 (235)
492 PRK00414 gmhA phosphoheptose i 20.7 1.4E+02 0.003 22.0 3.3 28 95-122 123-150 (192)
493 PF00834 Ribul_P_3_epim: Ribul 20.6 78 0.0017 23.6 1.9 96 93-200 88-194 (201)
494 cd00733 GlyRS_alpha_core Class 20.5 1.2E+02 0.0026 23.5 2.9 40 156-198 88-130 (279)
495 cd06589 GH31 The enzymes of gl 20.4 1.2E+02 0.0026 23.5 3.1 29 93-121 62-90 (265)
496 PF13756 Stimulus_sens_1: Stim 20.4 80 0.0017 21.0 1.8 19 8-26 17-36 (112)
497 PRK08508 biotin synthase; Prov 20.3 2.4E+02 0.0053 22.1 4.8 100 97-201 75-187 (279)
498 TIGR01048 lysA diaminopimelate 20.2 5.2E+02 0.011 21.6 7.5 20 99-118 62-81 (417)
499 PF04230 PS_pyruv_trans: Polys 20.1 3.8E+02 0.0083 20.0 8.4 40 154-202 246-285 (286)
No 1
>PLN02940 riboflavin kinase
Probab=100.00 E-value=1.7e-35 Score=238.40 Aligned_cols=220 Identities=40% Similarity=0.692 Sum_probs=189.7
Q ss_pred CCccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 026543 8 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQ 87 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (237)
..+++|+||+||||+|+...+..++..+++++|...+.+......|.+..+.+..++.+++++ ...+++...+...+.
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 86 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLP--CSTDEFNSEITPLLS 86 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999987777777888888888888888888876 566666666655555
Q ss_pred hhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcC
Q 026543 88 TLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFE 167 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~ 167 (237)
+......++||+.++|+.|+++|++++|+||.....+...+.+..|+..+|+.+++++ +....||+|+.|..++++++
T Consensus 87 ~~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d--~v~~~KP~p~~~~~a~~~lg 164 (382)
T PLN02940 87 EQWCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGD--EVEKGKPSPDIFLEAAKRLN 164 (382)
T ss_pred HHHccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehh--hcCCCCCCHHHHHHHHHHcC
Confidence 5556688999999999999999999999999777665544334678999999999999 88889999999999999999
Q ss_pred CCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCCCCCCCCCCC
Q 026543 168 GGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPKDWGLPPFED 234 (237)
Q Consensus 168 ~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~l~~l~~~~~ 234 (237)
++|++|++|||+.+|+++|+++|+.+|+|.++.........++.+++++.|+...-++|||+.+
T Consensus 165 ---v~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~~~~~~~~~~~ 228 (382)
T PLN02940 165 ---VEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEKWGLPPFND 228 (382)
T ss_pred ---CChhHEEEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHcCHHHcCCCCccc
Confidence 9999999999999999999999999999998755443456789999999999988889998865
No 2
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=100.00 E-value=4.1e-34 Score=216.05 Aligned_cols=211 Identities=22% Similarity=0.361 Sum_probs=169.2
Q ss_pred CCccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCH-HHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHH-HHHHHHH
Q 026543 8 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDW-SLKAKMMGKKAIEAAQVFVEETGISDKLSAEDF-LVQREET 85 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 85 (237)
.++++|+||+||||+++...+..++.++++++|..... +.+....|.......+.+....+... ...... ....+..
T Consensus 5 ~~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNG-PSRQEVVQRIIARV 83 (222)
T ss_pred ccCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHH
Confidence 35899999999999999999999999999999987665 55566777776666665555443321 222333 2333333
Q ss_pred HHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHH
Q 026543 86 LQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKR 165 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~ 165 (237)
.+.......++||+.++|..|+++|++++|+||+...... ..++.+++..+|+.+++++ ..+.+||+++.++.++++
T Consensus 84 ~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~-~~l~~~~l~~~f~~~~~~~--~~~~~Kp~~~~~~~~~~~ 160 (222)
T PRK10826 84 ISLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLE-AVLTMFDLRDYFDALASAE--KLPYSKPHPEVYLNCAAK 160 (222)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHH-HHHHhCcchhcccEEEEcc--cCCCCCCCHHHHHHHHHH
Confidence 3334456789999999999999999999999997665554 5678889999999999998 888899999999999999
Q ss_pred cCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCc-ccccchhhhhhhhcccCCC
Q 026543 166 FEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDS-SYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 166 ~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~-~~~~~~~~~~~~~~el~~~ 225 (237)
+| ++|++|++|||+.+|+++|+++|+++|++..+.... .....++.++.++.|+..+
T Consensus 161 ~~---~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~~ 218 (222)
T PRK10826 161 LG---VDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAA 218 (222)
T ss_pred cC---CCHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhhh
Confidence 99 999999999999999999999999999998876532 3345789999999998544
No 3
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=2.9e-34 Score=219.80 Aligned_cols=209 Identities=22% Similarity=0.314 Sum_probs=162.3
Q ss_pred CCCCCccEEEEecCcccccchhhHHHHHHHHHHHcCC----CCCHHHH-HHhcCCChHHHHHHHHHHhCCCCCCCHHHHH
Q 026543 5 SSKKPITHVIFDMDGLLLDTEKFYTEVQELILARYNK----TFDWSLK-AKMMGKKAIEAAQVFVEETGISDKLSAEDFL 79 (237)
Q Consensus 5 ~~~~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (237)
+.+.++++|+|||||||+|+...+..++..+++++|. +...+.+ ..+.|.+....+..+... ... ....+.
T Consensus 17 ~~~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~---~~~~~~ 92 (248)
T PLN02770 17 SGLAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPD-DLE---RGLKFT 92 (248)
T ss_pred cccCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCc-chh---hHHHHH
Confidence 3456789999999999999999999999999999864 3444443 345676666555444321 110 111122
Q ss_pred HHHHHHHHhh-cCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHH
Q 026543 80 VQREETLQTL-FPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDI 158 (237)
Q Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~ 158 (237)
..+...+... .+...++||+.++|+.|+++|++++|+||+....+. ..++.+|+..+|+.+++++ +....||+|+.
T Consensus 93 ~~~~~~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~-~~l~~~gl~~~Fd~iv~~~--~~~~~KP~p~~ 169 (248)
T PLN02770 93 DDKEALFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAE-LMISLLGLSDFFQAVIIGS--ECEHAKPHPDP 169 (248)
T ss_pred HHHHHHHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHH-HHHHHcCChhhCcEEEecC--cCCCCCCChHH
Confidence 2233333332 245789999999999999999999999997766555 5678889999999999999 88889999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCc-ccccchhhhhhhhcccC
Q 026543 159 FLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDS-SYHSNADQLLSSLLGFN 223 (237)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~-~~~~~~~~~~~~~~el~ 223 (237)
|..++++++ ++|++|++|||+..|+++|+++|+.+|+|.++.... .....++++++++.|+.
T Consensus 170 ~~~a~~~~~---~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~~ 232 (248)
T PLN02770 170 YLKALEVLK---VSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDPK 232 (248)
T ss_pred HHHHHHHhC---CChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhhH
Confidence 999999999 999999999999999999999999999998875422 23457899999999843
No 4
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=100.00 E-value=9.5e-34 Score=218.12 Aligned_cols=208 Identities=21% Similarity=0.218 Sum_probs=162.9
Q ss_pred ccEEEEecCcccccchhh-HHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHH----------HHHHHhCCCCCCCHHHH
Q 026543 10 ITHVIFDMDGLLLDTEKF-YTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQ----------VFVEETGISDKLSAEDF 78 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 78 (237)
+++|+|||||||+|+... +..++..+++++|.+.+.+......|.+....++ .+...++.. ...+.+
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 79 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRL--PTEADI 79 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCC--CCHHHH
Confidence 689999999999998653 5788999999999877777776667766543332 334455554 333333
Q ss_pred HH---HHHHHH-HhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhc-ceeeeCCCCCccCCC
Q 026543 79 LV---QREETL-QTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLM-HHVVRGDDPEVKQGK 153 (237)
Q Consensus 79 ~~---~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f-~~~~~~~~~~~~~~k 153 (237)
.. .+...+ +.......++||+.++|+.|+++|++++|+||+...... ..++.+|+..+| +.+++++ +....|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~-~~l~~~gl~~~f~d~ii~~~--~~~~~K 156 (253)
T TIGR01422 80 EAIYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMD-VVAPEAALQGYRPDYNVTTD--DVPAGR 156 (253)
T ss_pred HHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHH-HHHHHHHhcCCCCceEEccc--cCCCCC
Confidence 33 232222 223345789999999999999999999999997766555 567888999986 9999998 788899
Q ss_pred CCHHHHHHHHHHcCCCCCC-CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCC-------------------------cc
Q 026543 154 PSPDIFLAAAKRFEGGPID-SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLD-------------------------SS 207 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~-~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~-------------------------~~ 207 (237)
|+|+.|..+++++| +. |++|++|||+.+|+++|+++|+.+|+|.+|... ++
T Consensus 157 P~p~~~~~a~~~l~---~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 233 (253)
T TIGR01422 157 PAPWMALKNAIELG---VYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARL 233 (253)
T ss_pred CCHHHHHHHHHHcC---CCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999999 95 999999999999999999999999999987642 23
Q ss_pred cccchhhhhhhhcccCCC
Q 026543 208 YHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 208 ~~~~~~~~~~~~~el~~~ 225 (237)
...+++++++++.|+...
T Consensus 234 ~~~~~~~v~~~~~el~~~ 251 (253)
T TIGR01422 234 KAAGAHYVIDTLAELPAV 251 (253)
T ss_pred HhcCCCEehhcHHHHHHh
Confidence 356799999999998543
No 5
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=100.00 E-value=8.7e-34 Score=213.38 Aligned_cols=212 Identities=25% Similarity=0.314 Sum_probs=173.2
Q ss_pred CCCccEEEEecCcccccchhhHHHHHHHHHHHcCCC-CCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 026543 7 KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKT-FDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREET 85 (237)
Q Consensus 7 ~~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (237)
++++++|+||+||||+|+...+..++..+++++|.. ...+......|.+....+.......... ...+......+.+
T Consensus 1 ~~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 78 (220)
T COG0546 1 MMMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEE--AAAELVERLREEF 78 (220)
T ss_pred CCCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccch--hHHHHHHHHHHHH
Confidence 357899999999999999999999999999999997 6788888888888887776665543322 1112222222222
Q ss_pred HHhhcC--CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHH
Q 026543 86 LQTLFP--TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAA 163 (237)
Q Consensus 86 ~~~~~~--~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l 163 (237)
...... ...++||+.++|..|+++|++++|+||....... .+++.+|+..+|+.+++++ .....||+|..+..++
T Consensus 79 ~~~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~-~~l~~~gl~~~F~~i~g~~--~~~~~KP~P~~l~~~~ 155 (220)
T COG0546 79 LTAYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELD-ILLKALGLADYFDVIVGGD--DVPPPKPDPEPLLLLL 155 (220)
T ss_pred HHHHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHH-HHHHHhCCccccceEEcCC--CCCCCCcCHHHHHHHH
Confidence 222222 2579999999999999999999999996655444 6788899999999999977 7888999999999999
Q ss_pred HHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC--CcccccchhhhhhhhcccCCCC
Q 026543 164 KRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL--DSSYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 164 ~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~--~~~~~~~~~~~~~~~~el~~~l 226 (237)
++++ ++|++++||||+.+|+++|++||+++++|.+|.. .......++++++++.|+...+
T Consensus 156 ~~~~---~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~~~l 217 (220)
T COG0546 156 EKLG---LDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELLALL 217 (220)
T ss_pred HHhC---CChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHHHHH
Confidence 9999 9988999999999999999999999999999874 4456778999999999986654
No 6
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=100.00 E-value=8.8e-34 Score=214.13 Aligned_cols=208 Identities=23% Similarity=0.298 Sum_probs=167.8
Q ss_pred ccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHH-hcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Q 026543 10 ITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAK-MMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQT 88 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (237)
+++|+||+||||+++.+.+..++..+++++|.+.+.....+ +.|.+..+.++.+....+.+. ...+.+...+...+..
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADE-AEAQAAFADFEERLAE 79 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999877766655 778888887777777655431 1122233333333333
Q ss_pred hc--CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh--hhcceeeeCCCCCccCCCCCHHHHHHHHH
Q 026543 89 LF--PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF--SLMHHVVRGDDPEVKQGKPSPDIFLAAAK 164 (237)
Q Consensus 89 ~~--~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~--~~f~~~~~~~~~~~~~~kp~~~~~~~~l~ 164 (237)
.. ...+++||+.++|+.|+++|++++|+||+...... ..++.+|+. .+|+.+++++ +....||+|+.|..+++
T Consensus 80 ~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~-~~l~~~~l~~~~~f~~i~~~~--~~~~~KP~p~~~~~a~~ 156 (220)
T TIGR03351 80 AYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAE-RLLEKLGWTVGDDVDAVVCPS--DVAAGRPAPDLILRAME 156 (220)
T ss_pred HhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHH-HHHHHhhhhhhccCCEEEcCC--cCCCCCCCHHHHHHHHH
Confidence 22 24689999999999999999999999997776655 467788998 9999999998 77789999999999999
Q ss_pred HcCCCCCC-CCcEEEEecCHHHHHHHHHcCCeE-EEEcCCCCC--cccccchhhhhhhhcccCC
Q 026543 165 RFEGGPID-SQEILVFEDAPSGVLAAKNAGMSV-VMVPDPRLD--SSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 165 ~~~~~~~~-~~~~~~igD~~~Di~~a~~~G~~~-i~v~~~~~~--~~~~~~~~~~~~~~~el~~ 224 (237)
+++ +. |++|+||||+.+|+++|+++|+.+ +++.++... ......++++++++.|+..
T Consensus 157 ~~~---~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l~~ 217 (220)
T TIGR03351 157 LTG---VQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADLPA 217 (220)
T ss_pred HcC---CCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHHHH
Confidence 999 97 799999999999999999999999 899876553 2234578889999988743
No 7
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=100.00 E-value=6.4e-34 Score=213.91 Aligned_cols=205 Identities=20% Similarity=0.226 Sum_probs=164.7
Q ss_pred CccEEEEecCcccccchhhHHHHHHHHHHHcCCC-CCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 026543 9 PITHVIFDMDGLLLDTEKFYTEVQELILARYNKT-FDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQ 87 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (237)
++++|+||+||||+|+...+..++..++++++.. .+.+.+....|.+..+.++.+.. ...+.+...+...+.
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 74 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKIDE-------SKVEEMITTYREFNH 74 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhcCH-------HHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999998763 56666777778776655543211 122333333443333
Q ss_pred h-hcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHc
Q 026543 88 T-LFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRF 166 (237)
Q Consensus 88 ~-~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~ 166 (237)
+ ......++||+.++|+.|+++|++++|+||+....+. ..++..|+..+|+.+++++ +....||+|..+..+++++
T Consensus 75 ~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~-~~l~~~gl~~~f~~i~~~~--~~~~~Kp~p~~~~~~~~~~ 151 (214)
T PRK13288 75 EHHDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVE-MGLKLTGLDEFFDVVITLD--DVEHAKPDPEPVLKALELL 151 (214)
T ss_pred HhhhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHcCChhceeEEEecC--cCCCCCCCcHHHHHHHHHc
Confidence 2 2345789999999999999999999999997765544 5678889999999999998 7888999999999999999
Q ss_pred CCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCc--ccccchhhhhhhhcccCCCC
Q 026543 167 EGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDS--SYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 167 ~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~--~~~~~~~~~~~~~~el~~~l 226 (237)
+ ++|+++++|||+.+|+++|+++|+.+++|.++.... .....++++++++.|+...+
T Consensus 152 ~---~~~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~i 210 (214)
T PRK13288 152 G---AKPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAIV 210 (214)
T ss_pred C---CCHHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHHH
Confidence 9 999999999999999999999999999998875532 23456889999999886543
No 8
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=8.4e-34 Score=214.95 Aligned_cols=209 Identities=19% Similarity=0.201 Sum_probs=162.2
Q ss_pred CCccEEEEecCcccccchhhHHHHHHHHHHHcCCC-CCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 026543 8 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKT-FDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETL 86 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (237)
.++++|+||+||||+|+...+..++..+++++|.+ .+.+......|.+.....+.+... .. ....+++...+...+
T Consensus 10 ~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~ 86 (229)
T PRK13226 10 RFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPE--LD-AAARDALIPEFLQRY 86 (229)
T ss_pred ccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhcc--CC-hHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999985 455556666666555444333221 11 011223333333333
Q ss_pred Hh-hcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHH
Q 026543 87 QT-LFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKR 165 (237)
Q Consensus 87 ~~-~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~ 165 (237)
.. ......++||+.++|+.|+++|++++|+||+...... ..++..|+..+|+.+++++ ..+..||+|+.+..++++
T Consensus 87 ~~~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~-~~l~~~~l~~~f~~i~~~~--~~~~~KP~p~~~~~~~~~ 163 (229)
T PRK13226 87 EALIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLAR-LILPQLGWEQRCAVLIGGD--TLAERKPHPLPLLVAAER 163 (229)
T ss_pred HHhhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHH-HHHHHcCchhcccEEEecC--cCCCCCCCHHHHHHHHHH
Confidence 33 2345789999999999999999999999997665443 5678889999999999888 777899999999999999
Q ss_pred cCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCC---cccccchhhhhhhhcccCCC
Q 026543 166 FEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLD---SSYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 166 ~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~---~~~~~~~~~~~~~~~el~~~ 225 (237)
+| ++|++|++|||+.+|+++|+++|+++|+|..+... ......++++++++.|+...
T Consensus 164 l~---~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~ 223 (229)
T PRK13226 164 IG---VAPTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLWNP 223 (229)
T ss_pred hC---CChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHHHH
Confidence 99 99999999999999999999999999999887652 22345799999999988543
No 9
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=100.00 E-value=3e-33 Score=210.31 Aligned_cols=204 Identities=21% Similarity=0.274 Sum_probs=165.4
Q ss_pred EEEecCcccccchhhHHHHHHHHHHHcCCC-CCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHH---HHHHHHHHHHHh
Q 026543 13 VIFDMDGLLLDTEKFYTEVQELILARYNKT-FDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAE---DFLVQREETLQT 88 (237)
Q Consensus 13 vifD~DGTL~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 88 (237)
|+||+||||+|+...+..++..+++++|.. .+.+.+....|.+....++.+...++.. ...+ .+.+.+...+.+
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 78 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQE--PDAQRVAELRKLFDRHYEE 78 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccc--cChHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999985 5666666777777777777777665544 3333 223333333333
Q ss_pred hc-CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcC
Q 026543 89 LF-PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFE 167 (237)
Q Consensus 89 ~~-~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~ 167 (237)
.. ....++||+.++|+.|+++|++++|+||+...... ..+++.|+..+|+.+++++ +....||+|+.|..++++++
T Consensus 79 ~~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~-~~l~~~~l~~~f~~~~~~~--~~~~~Kp~p~~~~~~~~~~~ 155 (213)
T TIGR01449 79 VAGELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLAR-PLLELLGLAKYFSVLIGGD--SLAQRKPHPDPLLLAAERLG 155 (213)
T ss_pred hccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHcCcHhhCcEEEecC--CCCCCCCChHHHHHHHHHcC
Confidence 22 34789999999999999999999999997665544 5688889999999999998 78888999999999999999
Q ss_pred CCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCC--cccccchhhhhhhhcccCC
Q 026543 168 GGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLD--SSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 168 ~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~--~~~~~~~~~~~~~~~el~~ 224 (237)
++|++|++|||+.+|+++|+++|+.+++|.++... ......++++++++.|+..
T Consensus 156 ---~~~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~~ 211 (213)
T TIGR01449 156 ---VAPQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELPP 211 (213)
T ss_pred ---CChhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHHHh
Confidence 99999999999999999999999999999887652 2334578999999998754
No 10
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=100.00 E-value=2.8e-33 Score=214.53 Aligned_cols=209 Identities=20% Similarity=0.290 Sum_probs=160.6
Q ss_pred CccEEEEecCcccccch-hhHHHHHHHHHHHcCCCCCHHHH-HHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 026543 9 PITHVIFDMDGLLLDTE-KFYTEVQELILARYNKTFDWSLK-AKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETL 86 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (237)
.+++|+|||||||+|+. ..+..+|..+++++|+....+.. ....|.+....++.+... ... ......+...+...+
T Consensus 23 ~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~-~~~-~~~~~~l~~~~~~~~ 100 (260)
T PLN03243 23 GWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCW-SRD-FLQMKRLAIRKEDLY 100 (260)
T ss_pred CceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhcc-CCC-HHHHHHHHHHHHHHH
Confidence 47999999999999996 56678999999999997666544 567788877766665432 111 011123333333333
Q ss_pred Hhhc-CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHH
Q 026543 87 QTLF-PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKR 165 (237)
Q Consensus 87 ~~~~-~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~ 165 (237)
.... ....++||+.++|+.|+++|++++|+||+...... ..++++|+..+|+.+++++ +....||+|+.|..++++
T Consensus 101 ~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~-~~l~~~gl~~~Fd~ii~~~--d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 101 EYMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLE-RAIEAVGMEGFFSVVLAAE--DVYRGKPDPEMFMYAAER 177 (260)
T ss_pred HHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHH-HHHHHcCCHhhCcEEEecc--cCCCCCCCHHHHHHHHHH
Confidence 3222 34678999999999999999999999997665554 5688889999999999999 888899999999999999
Q ss_pred cCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCCC
Q 026543 166 FEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 166 ~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~l 226 (237)
+| ++|++|+||||+..|+++|+++|+.+|+|. +.........+++++++++|+....
T Consensus 178 l~---~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~-g~~~~~~l~~ad~vi~~~~el~~~~ 234 (260)
T PLN03243 178 LG---FIPERCIVFGNSNSSVEAAHDGCMKCVAVA-GKHPVYELSAGDLVVRRLDDLSVVD 234 (260)
T ss_pred hC---CChHHeEEEcCCHHHHHHHHHcCCEEEEEe-cCCchhhhccCCEEeCCHHHHHHHH
Confidence 99 999999999999999999999999999997 4332222335677777777765443
No 11
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=100.00 E-value=5e-33 Score=215.52 Aligned_cols=212 Identities=21% Similarity=0.208 Sum_probs=163.1
Q ss_pred CCCccEEEEecCcccccchhh-HHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHH----------HHHHhCCCCCCCH
Q 026543 7 KKPITHVIFDMDGLLLDTEKF-YTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQV----------FVEETGISDKLSA 75 (237)
Q Consensus 7 ~~~~~~vifD~DGTL~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 75 (237)
|+++|+|+||+||||+|+... +..++..+++++|.+.+.+......|.+.....+. +...++.. ...
T Consensus 1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~ 78 (267)
T PRK13478 1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRL--PTE 78 (267)
T ss_pred CCceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCC--CCH
Confidence 567899999999999998653 46899999999998777776666777665443332 23344543 333
Q ss_pred HHHHHH---HHHHHH-hhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhc-ceeeeCCCCCcc
Q 026543 76 EDFLVQ---REETLQ-TLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLM-HHVVRGDDPEVK 150 (237)
Q Consensus 76 ~~~~~~---~~~~~~-~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f-~~~~~~~~~~~~ 150 (237)
+..... +...+. .......++||+.++|+.|+++|++++|+||+...... ..++..++..+| +.+++++ +..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~-~~l~~~~l~~~~~d~i~~~~--~~~ 155 (267)
T PRK13478 79 ADVDALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMD-VVVPLAAAQGYRPDHVVTTD--DVP 155 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHH-HHHHHHhhcCCCceEEEcCC--cCC
Confidence 333332 222222 23345789999999999999999999999997666544 467777787774 8999998 788
Q ss_pred CCCCCHHHHHHHHHHcCCCCCC-CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCC------------------------
Q 026543 151 QGKPSPDIFLAAAKRFEGGPID-SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLD------------------------ 205 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~~~~~~~-~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~------------------------ 205 (237)
..||+|+.|..+++++| +. +++|+||||+.+|+++|+++|+.+|+|.++...
T Consensus 156 ~~KP~p~~~~~a~~~l~---~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (267)
T PRK13478 156 AGRPYPWMALKNAIELG---VYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERAR 232 (267)
T ss_pred CCCCChHHHHHHHHHcC---CCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHH
Confidence 88999999999999999 96 699999999999999999999999999987652
Q ss_pred -cccccchhhhhhhhcccCCCC
Q 026543 206 -SSYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 206 -~~~~~~~~~~~~~~~el~~~l 226 (237)
.....+++++++++.|+...+
T Consensus 233 ~~l~~~~a~~vi~~~~~l~~~l 254 (267)
T PRK13478 233 ARLRAAGAHYVIDTIADLPAVI 254 (267)
T ss_pred HHHHHcCCCeehhhHHHHHHHH
Confidence 233567899999999986544
No 12
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=205.94 Aligned_cols=208 Identities=31% Similarity=0.424 Sum_probs=167.3
Q ss_pred CccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Q 026543 9 PITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQT 88 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (237)
++++|+|||||||+||...+.++|.++++++|+..+.+......|.........+.........................
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEAL 80 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999999888887778877777777777765543212233334444444445
Q ss_pred hcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCC
Q 026543 89 LFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEG 168 (237)
Q Consensus 89 ~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~ 168 (237)
.....++.||+.++|+.|+++|+++++.|++...... ..++..|+.++|+.+++++ ++..+||.|+.|..+++++|
T Consensus 81 ~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~-~~L~~~gl~~~f~~~v~~~--dv~~~KP~Pd~yL~Aa~~Lg- 156 (221)
T COG0637 81 ELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAE-RVLARLGLLDYFDVIVTAD--DVARGKPAPDIYLLAAERLG- 156 (221)
T ss_pred hhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHH-HHHHHccChhhcchhccHH--HHhcCCCCCHHHHHHHHHcC-
Confidence 5566899999999999999999999999996665544 5788889999999999998 78888999999999999999
Q ss_pred CCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCC----cccccchhhhhhhhccc
Q 026543 169 GPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLD----SSYHSNADQLLSSLLGF 222 (237)
Q Consensus 169 ~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~----~~~~~~~~~~~~~~~el 222 (237)
++|++|+.|+|+++++++|++|||.+++|..+... .......+....++.++
T Consensus 157 --v~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (221)
T COG0637 157 --VDPEECVVVEDSPAGIQAAKAAGMRVVGVPAGHDRPHLDPLDAHGADTVLLDLAEL 212 (221)
T ss_pred --CChHHeEEEecchhHHHHHHHCCCEEEEecCCCCccccchhhhhhcchhhccHHHH
Confidence 99999999999999999999999999999974331 22234445555555544
No 13
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=100.00 E-value=4.6e-32 Score=204.87 Aligned_cols=207 Identities=18% Similarity=0.350 Sum_probs=166.8
Q ss_pred CCCccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHH-HHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 026543 7 KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSL-KAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREET 85 (237)
Q Consensus 7 ~~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (237)
|+++++|+||+||||+|+...+..++.++++++|.+...+. ...+.+.+....++.+...++.. ...+++...+...
T Consensus 1 ~~~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 78 (221)
T PRK10563 1 MSQIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVT--LAKAELEPVYRAE 78 (221)
T ss_pred CCCCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCC--CCHHHHHHHHHHH
Confidence 34689999999999999999999999999999998776544 45556777788888888888876 5556666555443
Q ss_pred HHh-hcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcc-eeeeCCCCCccCCCCCHHHHHHHH
Q 026543 86 LQT-LFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMH-HVVRGDDPEVKQGKPSPDIFLAAA 163 (237)
Q Consensus 86 ~~~-~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~-~~~~~~~~~~~~~kp~~~~~~~~l 163 (237)
+.. ......++||+.++|+.| +++++|+||+....+. ..++..|+..+|+ .+++++ +.+..||+|+.|..++
T Consensus 79 ~~~~~~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~-~~l~~~~l~~~F~~~v~~~~--~~~~~KP~p~~~~~a~ 152 (221)
T PRK10563 79 VARLFDSELEPIAGANALLESI---TVPMCVVSNGPVSKMQ-HSLGKTGMLHYFPDKLFSGY--DIQRWKPDPALMFHAA 152 (221)
T ss_pred HHHHHHccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHH-HHHHhcChHHhCcceEeeHH--hcCCCCCChHHHHHHH
Confidence 332 234578999999999999 3899999997766555 4678889999996 677887 6788999999999999
Q ss_pred HHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCC
Q 026543 164 KRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 164 ~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~ 224 (237)
+++| ++|++|++|||++.|+++|+++|+.++++..+...+.....++.++.++.||..
T Consensus 153 ~~~~---~~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (221)
T PRK10563 153 EAMN---VNVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQLPE 210 (221)
T ss_pred HHcC---CCHHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHHHH
Confidence 9999 999999999999999999999999999997544433233456677888888754
No 14
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=100.00 E-value=2e-32 Score=216.69 Aligned_cols=207 Identities=19% Similarity=0.243 Sum_probs=165.1
Q ss_pred CccEEEEecCcccccchh-hHHHHHHHHHHHcCCCCCHHH-HHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 026543 9 PITHVIFDMDGLLLDTEK-FYTEVQELILARYNKTFDWSL-KAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETL 86 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~-~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (237)
..++|+|||||||+|+.. .+..+|..+++++|....... .....|.+....++.+....... ...+.+.+.+...+
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~--~~~e~l~~~~~~~y 207 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDP--AELRRMATRKEEIY 207 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCH--HHHHHHHHHHHHHH
Confidence 479999999999999987 556799999999999766553 56778888887777665432111 22233444444444
Q ss_pred Hhhc-CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHH
Q 026543 87 QTLF-PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKR 165 (237)
Q Consensus 87 ~~~~-~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~ 165 (237)
.+.. ....++||+.++|+.|+++|++++|+||+....+. ..++..|+..+|+.+++++ +....||+|+.|..++++
T Consensus 208 ~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~-~~L~~lgL~~yFd~Iv~sd--dv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 208 QALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLE-NAIGSIGIRGFFSVIVAAE--DVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred HHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHcCCHHHceEEEecC--cCCCCCCCHHHHHHHHHH
Confidence 4333 34679999999999999999999999997766555 5688899999999999999 788899999999999999
Q ss_pred cCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCC
Q 026543 166 FEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 166 ~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~ 224 (237)
+| ++|++|+||||+..|+++|+++|+.+|+|..+.... ....++++++++.||..
T Consensus 285 lg---l~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~-~l~~Ad~iI~s~~EL~~ 339 (381)
T PLN02575 285 LN---FIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPIY-ELGAADLVVRRLDELSI 339 (381)
T ss_pred cC---CCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCChh-HhcCCCEEECCHHHHHH
Confidence 99 999999999999999999999999999998653322 23457888999998843
No 15
>PRK11587 putative phosphatase; Provisional
Probab=100.00 E-value=1.6e-32 Score=206.70 Aligned_cols=202 Identities=27% Similarity=0.342 Sum_probs=156.1
Q ss_pred CccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHH---H
Q 026543 9 PITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREE---T 85 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 85 (237)
++++|+||+||||+|+...+..++..+++++|.+. .+......|.+....++.+... ...+.+...+.. +
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 74 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP-DEVLNFIHGKQAITSLRHFMAG------ASEAEIQAEFTRLEQI 74 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH-HHHHHHHcCCCHHHHHHHHhcc------CCcHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999863 2333344576666555544321 223333333322 1
Q ss_pred HHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHH
Q 026543 86 LQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKR 165 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~ 165 (237)
.........++||+.++|+.|+++|++++|+||+...... ..++..++ .+|+.+++++ +....||+|..|..++++
T Consensus 75 ~~~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~-~~l~~~~l-~~~~~i~~~~--~~~~~KP~p~~~~~~~~~ 150 (218)
T PRK11587 75 EATDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVAS-ARHKAAGL-PAPEVFVTAE--RVKRGKPEPDAYLLGAQL 150 (218)
T ss_pred HHhhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHH-HHHHhcCC-CCccEEEEHH--HhcCCCCCcHHHHHHHHH
Confidence 1222345789999999999999999999999997665443 44566676 4578888887 777889999999999999
Q ss_pred cCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCC
Q 026543 166 FEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 166 ~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~ 225 (237)
+| ++|++|++|||+..|+++|+++|+.+++|..+... .....++++++++.|+...
T Consensus 151 ~g---~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~-~~~~~~~~~~~~~~el~~~ 206 (218)
T PRK11587 151 LG---LAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADT-PRLDEVDLVLHSLEQLTVT 206 (218)
T ss_pred cC---CCcccEEEEecchhhhHHHHHCCCEEEEECCCCch-hhhccCCEEecchhheeEE
Confidence 99 99999999999999999999999999999876532 2345689999999998644
No 16
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=100.00 E-value=5.9e-32 Score=204.38 Aligned_cols=205 Identities=20% Similarity=0.251 Sum_probs=150.1
Q ss_pred ccEEEEecCcccccchhhHHHHHHHH---HHHcCCCCCHHHHHHhc-------CCChHHHHHHHHHHhCCCCCCCHHHHH
Q 026543 10 ITHVIFDMDGLLLDTEKFYTEVQELI---LARYNKTFDWSLKAKMM-------GKKAIEAAQVFVEETGISDKLSAEDFL 79 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (237)
+++|+||+||||+++...+..++..+ +..+|.+.+.+...... +.........+....+.. ...+...
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 79 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEE--YNPKLVA 79 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhh--cCHHHHH
Confidence 68999999999999998887777654 45667766554433211 111111111122222211 2223333
Q ss_pred HHHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHH
Q 026543 80 VQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIF 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~ 159 (237)
.....+.........++||+.++|+.|+++|++++|+||+...... ..++..|+..+|+.+++++ +.+..||+|+.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~-~~l~~~~l~~~f~~i~~~~--~~~~~KP~~~~~ 156 (221)
T TIGR02253 80 AFVYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQW-EKLERLGVRDFFDAVITSE--EEGVEKPHPKIF 156 (221)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHH-HHHHhCChHHhccEEEEec--cCCCCCCCHHHH
Confidence 3333333333345789999999999999999999999997765554 4578889999999999998 888899999999
Q ss_pred HHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCCc---ccccchhhhhhhhccc
Q 026543 160 LAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLDS---SYHSNADQLLSSLLGF 222 (237)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~---~~~~~~~~~~~~~~el 222 (237)
..+++++| ++|+++++|||+. +|+.+|+++|+.+|++..+.... .....+++++.++.|+
T Consensus 157 ~~~~~~~~---~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 157 YAALKRLG---VKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred HHHHHHcC---CChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 99999999 9999999999998 89999999999999998876532 2234678888888876
No 17
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=5.8e-32 Score=209.31 Aligned_cols=218 Identities=21% Similarity=0.272 Sum_probs=167.2
Q ss_pred CCccCC---CCCccEEEEecCcccccchhhHHHHHHHHHHHcCCCC-CHHHHHHhcCCChHHHHHHHHHH-h---CCCCC
Q 026543 1 MAAVSS---KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTF-DWSLKAKMMGKKAIEAAQVFVEE-T---GISDK 72 (237)
Q Consensus 1 m~~~~~---~~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~ 72 (237)
|+++.. -+.+++|+|||||||+|+...+..++..+++++|.+. ..+......+.+.......+... + +++.
T Consensus 1 ~~~~~~~~~~~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~- 79 (272)
T PRK13223 1 MSGFEQLFPGRLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDD- 79 (272)
T ss_pred CcchhhhCCCccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCH-
Confidence 555432 2458999999999999999999999999999999875 34455666676655554444321 1 2220
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCC
Q 026543 73 LSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQG 152 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~ 152 (237)
...+.+.+.+...+........++||+.++|+.|+++|++++|+||+...... ..++..++..+|+.+++++ ..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~-~~l~~~~i~~~f~~i~~~d--~~~~~ 156 (272)
T PRK13223 80 ELAEQALALFMEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVA-PLLDQMKIGRYFRWIIGGD--TLPQK 156 (272)
T ss_pred HHHHHHHHHHHHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHH-HHHHHcCcHhhCeEEEecC--CCCCC
Confidence 11223333344444333334678999999999999999999999997665444 5677788999999999998 77889
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCC--cccccchhhhhhhhcccCCC
Q 026543 153 KPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLD--SSYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 153 kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~--~~~~~~~~~~~~~~~el~~~ 225 (237)
||++..+..+++++| ++|++|++|||+.+|+++|+++|+++++|.+|... +.....++++++++.+|...
T Consensus 157 Kp~p~~~~~~~~~~g---~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~~~ 228 (272)
T PRK13223 157 KPDPAALLFVMKMAG---VPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALLPG 228 (272)
T ss_pred CCCcHHHHHHHHHhC---CChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHHHH
Confidence 999999999999999 99999999999999999999999999999887652 22345799999999998643
No 18
>PLN02811 hydrolase
Probab=100.00 E-value=4.3e-31 Score=199.13 Aligned_cols=218 Identities=80% Similarity=1.260 Sum_probs=174.8
Q ss_pred cCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcCCCCCC
Q 026543 17 MDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQTLFPTSELM 96 (237)
Q Consensus 17 ~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (237)
|||||+|+...+..+|..+++++|+..+.+....+.|.+.......+....+++.....+.+......++........++
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTSDLM 80 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 79999999999999999999999998777777778888888878888887776522334555555555555544567889
Q ss_pred ccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcE
Q 026543 97 PGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEI 176 (237)
Q Consensus 97 ~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~ 176 (237)
||+.++|+.|+++|++++|+||.........+.+..++..+|+.++++++.+.+..||+|+.|..++++++...++|++|
T Consensus 81 ~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~ 160 (220)
T PLN02811 81 PGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKV 160 (220)
T ss_pred ccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCccce
Confidence 99999999999999999999997766555455666678899999998873335678999999999999993111899999
Q ss_pred EEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCCCCCCCCCCC
Q 026543 177 LVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPKDWGLPPFED 234 (237)
Q Consensus 177 ~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~l~~l~~~~~ 234 (237)
+||||+..|+++|+++|+.+|+|.++.........++++++++.|+...=++|+++-+
T Consensus 161 v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~~~~~~~~~~~ 218 (220)
T PLN02811 161 LVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKPEEWGLPPFPD 218 (220)
T ss_pred EEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCHHHcCCCCCCC
Confidence 9999999999999999999999988765433345799999999998755566777654
No 19
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=100.00 E-value=7.3e-31 Score=193.58 Aligned_cols=183 Identities=32% Similarity=0.466 Sum_probs=152.7
Q ss_pred CCccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 026543 8 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQ 87 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (237)
.++++|+||+||||+|+...+..++..+++++|.+.+........|.+..+.++.+....+.. ...+.+...+...+.
T Consensus 3 ~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 80 (188)
T PRK10725 3 DRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQAD--LDPHALAREKTEAVK 80 (188)
T ss_pred CcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999877767777778888877777787776655 555555554433333
Q ss_pred h-hcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHc
Q 026543 88 T-LFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRF 166 (237)
Q Consensus 88 ~-~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~ 166 (237)
. ......++|+ .++|..|++. ++++|+||+...... ..++..|+..+|+.+++++ +.+..||+|+.|..+++++
T Consensus 81 ~~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~-~~l~~~~l~~~fd~i~~~~--~~~~~KP~p~~~~~~~~~~ 155 (188)
T PRK10725 81 SMLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAE-ALLAHLGLRRYFDAVVAAD--DVQHHKPAPDTFLRCAQLM 155 (188)
T ss_pred HHHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHH-HHHHhCCcHhHceEEEehh--hccCCCCChHHHHHHHHHc
Confidence 3 2345677886 5899999876 899999996666555 4678889999999999999 8888999999999999999
Q ss_pred CCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEc
Q 026543 167 EGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVP 200 (237)
Q Consensus 167 ~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~ 200 (237)
+ ++|++|++|||+.+|+++|+++|+++|+|.
T Consensus 156 ~---~~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 156 G---VQPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred C---CCHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 9 999999999999999999999999999985
No 20
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=100.00 E-value=7.4e-31 Score=193.08 Aligned_cols=180 Identities=31% Similarity=0.495 Sum_probs=149.4
Q ss_pred ccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHH
Q 026543 10 ITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFL---VQREETL 86 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 86 (237)
+++|+||+||||+++...+..++..+++++|...+........|.+....++.+..+++.. .+.+.+. ..+...+
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 78 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTSLGGLSREDILRAILKLRKPG--LSLETIHQLAERKNELY 78 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHHcCCCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999876655555667788888888888776543 4444433 3333444
Q ss_pred Hhhc--CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHH
Q 026543 87 QTLF--PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAK 164 (237)
Q Consensus 87 ~~~~--~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~ 164 (237)
.+.. ....++||+.++|+.|+++|++++++||+ ... ...++..|+..+|+.+++++ ..+..||++..|..+++
T Consensus 79 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~-~~~l~~~~l~~~f~~v~~~~--~~~~~kp~~~~~~~~~~ 153 (185)
T TIGR02009 79 RELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNA-DRILAKLGLTDYFDAIVDAD--EVKEGKPHPETFLLAAE 153 (185)
T ss_pred HHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhH-HHHHHHcChHHHCCEeeehh--hCCCCCCChHHHHHHHH
Confidence 4332 34789999999999999999999999996 333 35678889999999999998 78889999999999999
Q ss_pred HcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEE
Q 026543 165 RFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMV 199 (237)
Q Consensus 165 ~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 199 (237)
+++ ++|+++++|||+.+|+++|+++|+++++|
T Consensus 154 ~~~---~~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 154 LLG---VSPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred HcC---CCHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 999 99999999999999999999999999875
No 21
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=100.00 E-value=5.3e-31 Score=193.85 Aligned_cols=179 Identities=27% Similarity=0.421 Sum_probs=149.1
Q ss_pred EEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHH---HHHHHh
Q 026543 12 HVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQR---EETLQT 88 (237)
Q Consensus 12 ~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 88 (237)
+|+||+||||+|+...+..++..+++.+|.+.+.+....+.+.+..+.++.+..+.+.. .+.+...+.. ...+.+
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 78 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKK--YSEEEKEELAERKNDYYVE 78 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999987777667777888888888888887765 4444333222 222222
Q ss_pred h---cCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHH
Q 026543 89 L---FPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKR 165 (237)
Q Consensus 89 ~---~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~ 165 (237)
. .....++||+.++|+.|+++|++++|+||+... ...++..|+..+|+.+++++ +.+..||+|+.|..++++
T Consensus 79 ~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~~---~~~l~~~~l~~~f~~~~~~~--~~~~~kp~p~~~~~~~~~ 153 (185)
T TIGR01990 79 LLKELTPADVLPGIKNLLDDLKKNNIKIALASASKNA---PTVLEKLGLIDYFDAIVDPA--EIKKGKPDPEIFLAAAEG 153 (185)
T ss_pred HHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCccH---HHHHHhcCcHhhCcEEEehh--hcCCCCCChHHHHHHHHH
Confidence 2 223578999999999999999999999985432 24678889999999999998 888899999999999999
Q ss_pred cCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEc
Q 026543 166 FEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVP 200 (237)
Q Consensus 166 ~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~ 200 (237)
++ ++|++|++|||+.+|+++|+++|+++|+|.
T Consensus 154 ~~---~~~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 154 LG---VSPSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred cC---CCHHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 99 999999999999999999999999999874
No 22
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=100.00 E-value=1.8e-31 Score=199.26 Aligned_cols=198 Identities=24% Similarity=0.334 Sum_probs=157.1
Q ss_pred EEEecCcccccchhhHHHHHHHHHHHc-CC-CCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhc
Q 026543 13 VIFDMDGLLLDTEKFYTEVQELILARY-NK-TFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQTLF 90 (237)
Q Consensus 13 vifD~DGTL~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (237)
|+|||||||+|+...+..+++.+++++ |. ..+.+.+.+..|.+....+ +.++.+ . ..........+ ...
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~--~--~~~~~~~~~~~-~~~ 71 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDIM----RIMGLP--L--EMEEPFVRESY-RLA 71 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHHH----HHcCCC--H--HHHHHHHHHHH-Hhh
Confidence 689999999999999999999999884 76 3456666677776554443 334433 1 11111222222 234
Q ss_pred CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 91 PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 91 ~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
....++||+.++|+.|+++|++++|+||+...... ..++..|+..+|+.+++++ +....||++..+..++++++
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~-~~l~~~~l~~~f~~i~~~~--~~~~~KP~~~~~~~~~~~~~--- 145 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPRAR-SLLEALGLLPLFDHVIGSD--EVPRPKPAPDIVREALRLLD--- 145 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHH-HHHHHcCChhheeeEEecC--cCCCCCCChHHHHHHHHHcC---
Confidence 56889999999999999999999999997666554 5678889999999999998 77789999999999999999
Q ss_pred CCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCc--ccccchhhhhhhhcccCCC
Q 026543 171 IDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDS--SYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~--~~~~~~~~~~~~~~el~~~ 225 (237)
++|++|+||||+.+|+++|+++|++++++.++.... .....++++++++.|+...
T Consensus 146 ~~~~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~~ 202 (205)
T TIGR01454 146 VPPEDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLAL 202 (205)
T ss_pred CChhheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHHH
Confidence 999999999999999999999999999999887532 3356789999999887543
No 23
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=6.2e-31 Score=199.47 Aligned_cols=211 Identities=21% Similarity=0.230 Sum_probs=168.1
Q ss_pred CCccEEEEecCcccccchhhHHHHHHHHHHHcCCC-CCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHH---HHHH
Q 026543 8 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKT-FDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFL---VQRE 83 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 83 (237)
+++++|+||+||||+++...+..++..+++++|.+ .+...+....+.+.....+..+...+.. .+.+... ..+.
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 81 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGRE--PDEELLEKLRELFD 81 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCC--ccHHHHHHHHHHHH
Confidence 45899999999999999988899999999999985 3555566677777766666665554433 3333333 3333
Q ss_pred HHHHhhc-CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHH
Q 026543 84 ETLQTLF-PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAA 162 (237)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~ 162 (237)
..+.... ....++||+.++++.|+++|++++++||+...... .+++..|+..+|+.+++++ .....||+|..+..+
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~-~~l~~~~l~~~f~~~~~~~--~~~~~kp~~~~~~~~ 158 (226)
T PRK13222 82 RHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVA-PLLEALGIADYFSVVIGGD--SLPNKKPDPAPLLLA 158 (226)
T ss_pred HHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHcCCccCccEEEcCC--CCCCCCcChHHHHHH
Confidence 3343332 35789999999999999999999999997665444 5678889999999999988 777889999999999
Q ss_pred HHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCC--cccccchhhhhhhhcccCCCC
Q 026543 163 AKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLD--SSYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 163 l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~--~~~~~~~~~~~~~~~el~~~l 226 (237)
+++++ +++++|++|||+.+|+++|+++|+.+++|.++... +.....+++++.++.++...+
T Consensus 159 ~~~~~---~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~~l 221 (226)
T PRK13222 159 CEKLG---LDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLPLL 221 (226)
T ss_pred HHHcC---CChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHHHHH
Confidence 99999 99999999999999999999999999999987652 233457889999999986543
No 24
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.98 E-value=1.6e-31 Score=206.07 Aligned_cols=204 Identities=19% Similarity=0.241 Sum_probs=161.4
Q ss_pred CccEEEEecCcccccchhhHHHHHHHHHHHcCCC-CCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 026543 9 PITHVIFDMDGLLLDTEKFYTEVQELILARYNKT-FDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQ 87 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (237)
.+++|+|||||||+|+.+.+..++..+++++|.. .+.+.+.+..+.+... +.+.++.+. ...+++...+...+.
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~----i~~~~~~~~-~~~~~~~~~~~~~~~ 135 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRT----IVRRAGLSP-WQQARLLQRVQRQLG 135 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHH----HHHHcCCCH-HHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999985 5556666666655443 334444331 223344444555555
Q ss_pred hhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcC
Q 026543 88 TLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFE 167 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~ 167 (237)
.......++||+.++|+.|+++|++++|+||+....+. ..++..|+..+|+.+++++ .. ++++..+..++++++
T Consensus 136 ~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~-~~L~~~gl~~~F~~vi~~~--~~---~~k~~~~~~~l~~~~ 209 (273)
T PRK13225 136 DCLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIE-AFLQRQGLRSLFSVVQAGT--PI---LSKRRALSQLVAREG 209 (273)
T ss_pred hhcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHcCChhheEEEEecC--CC---CCCHHHHHHHHHHhC
Confidence 55566789999999999999999999999997766555 5688889999999988776 43 345789999999999
Q ss_pred CCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCc--ccccchhhhhhhhcccCCCC
Q 026543 168 GGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDS--SYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 168 ~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~--~~~~~~~~~~~~~~el~~~l 226 (237)
++|++|++|||+.+|+++|+++|+.+|+|..+.... .....++++++++.||...+
T Consensus 210 ---~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~~~ 267 (273)
T PRK13225 210 ---WQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQAV 267 (273)
T ss_pred ---cChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHHHHH
Confidence 999999999999999999999999999999876633 33567999999999886543
No 25
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.97 E-value=2.9e-30 Score=195.54 Aligned_cols=203 Identities=17% Similarity=0.234 Sum_probs=153.0
Q ss_pred ccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcC-------------CChHH----HHHHHHHHhCCCCC
Q 026543 10 ITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMG-------------KKAIE----AAQVFVEETGISDK 72 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------~~~~~----~~~~~~~~~~~~~~ 72 (237)
+|+|+||+||||+|+...+..++..+++++|...+......+.+ .+... .+..+.+..+..
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTE-- 78 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC--
Confidence 58999999999999999999999999999998654433221111 01111 122233334432
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCC
Q 026543 73 LSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQG 152 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~ 152 (237)
...+.+.+.+.. .......++||+.++|+.|+++ ++++|+||+...... ..++..++..+|+.+++++ +.+..
T Consensus 79 ~~~~~~~~~~~~---~~~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~-~~l~~~~l~~~fd~i~~~~--~~~~~ 151 (224)
T TIGR02254 79 ADEALLNQKYLR---FLEEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQY-KRLRKSGLFPFFDDIFVSE--DAGIQ 151 (224)
T ss_pred CcHHHHHHHHHH---HHhccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHH-HHHHHCCcHhhcCEEEEcC--ccCCC
Confidence 222222222222 2223468999999999999999 999999997766555 5678889999999999998 88889
Q ss_pred CCCHHHHHHHHHHc-CCCCCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCC
Q 026543 153 KPSPDIFLAAAKRF-EGGPIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 153 kp~~~~~~~~l~~~-~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~ 224 (237)
||+|..|..+++++ + ++|++|+||||+. +|+++|+++|+.++++..+.........++++++++.||..
T Consensus 152 KP~~~~~~~~~~~~~~---~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el~~ 222 (224)
T TIGR02254 152 KPDKEIFNYALERMPK---FSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEELYE 222 (224)
T ss_pred CCCHHHHHHHHHHhcC---CCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHHHh
Confidence 99999999999999 9 9999999999998 89999999999999998765543344567888999988754
No 26
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.97 E-value=2.6e-29 Score=184.91 Aligned_cols=215 Identities=47% Similarity=0.776 Sum_probs=192.4
Q ss_pred CCCCccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 026543 6 SKKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREET 85 (237)
Q Consensus 6 ~~~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (237)
.+..+.+++||+||||++++..+.+.+..++.+||...++....+..|....+..+.+..++..+ .+.+++....+..
T Consensus 6 ~~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp--~s~ee~~~e~~~~ 83 (222)
T KOG2914|consen 6 LSLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDP--VSREEFNKEEEEI 83 (222)
T ss_pred cccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCC--CCHHHHHHHHHHH
Confidence 34457899999999999999999999999999999999999999999999999999999877777 9999999888888
Q ss_pred HHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHH
Q 026543 86 LQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKR 165 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~ 165 (237)
.........+.||+.++++.|+.+|++++++|+++...+...+.++.++...|+.++.+++.++..+||.|++|..++++
T Consensus 84 ~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~ 163 (222)
T KOG2914|consen 84 LDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKR 163 (222)
T ss_pred HHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHh
Confidence 88888889999999999999999999999999988887777766666688889988886655888999999999999999
Q ss_pred cCCCCCCC-CcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCC
Q 026543 166 FEGGPIDS-QEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 166 ~~~~~~~~-~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~ 225 (237)
+| .+| +.|++++|+++.+++|+.+||.+|+|++..........++.+++++.++.+.
T Consensus 164 l~---~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (222)
T KOG2914|consen 164 LG---VPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLILESLEDFKPE 221 (222)
T ss_pred cC---CCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceecccccccCcC
Confidence 99 888 9999999999999999999999999999666666778888888888877543
No 27
>PRK09449 dUMP phosphatase; Provisional
Probab=99.97 E-value=9.5e-30 Score=192.63 Aligned_cols=200 Identities=18% Similarity=0.241 Sum_probs=144.6
Q ss_pred CccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHh--cCCC-----------hHHH----HHHHHHHhCCCC
Q 026543 9 PITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKM--MGKK-----------AIEA----AQVFVEETGISD 71 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~-----------~~~~----~~~~~~~~~~~~ 71 (237)
++|+|+||+||||+|.. ...++..+++++|...+.+....+ .+.+ ..+. .+.+.+.++.
T Consensus 2 ~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 77 (224)
T PRK09449 2 KYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFTAEDFQDYQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNV-- 77 (224)
T ss_pred CccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC--
Confidence 58999999999999854 356778888888887655443332 1111 1111 0112222222
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccC
Q 026543 72 KLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQ 151 (237)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~ 151 (237)
....+.+.+ .........++||+.++|+.|+ +|++++|+||+...... ..++..|+..+|+.+++++ +.+.
T Consensus 78 --~~~~~~~~~---~~~~~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~-~~l~~~~l~~~fd~v~~~~--~~~~ 148 (224)
T PRK09449 78 --TPGELNSAF---LNAMAEICTPLPGAVELLNALR-GKVKMGIITNGFTELQQ-VRLERTGLRDYFDLLVISE--QVGV 148 (224)
T ss_pred --CHHHHHHHH---HHHHhhcCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHH-HHHHhCChHHHcCEEEEEC--ccCC
Confidence 122222222 2222234679999999999999 57999999997766554 4578889999999999998 8888
Q ss_pred CCCCHHHHHHHHHHcCCCCCCC-CcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCC
Q 026543 152 GKPSPDIFLAAAKRFEGGPIDS-QEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 152 ~kp~~~~~~~~l~~~~~~~~~~-~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~ 224 (237)
.||+|..|..+++++| +.+ ++|+||||+. +|+++|+++|+.++++..+.........++++++++.||..
T Consensus 149 ~KP~p~~~~~~~~~~~---~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el~~ 220 (224)
T PRK09449 149 AKPDVAIFDYALEQMG---NPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSELEQ 220 (224)
T ss_pred CCCCHHHHHHHHHHcC---CCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHHHH
Confidence 9999999999999999 865 7999999998 79999999999999998644322223467888999988754
No 28
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.97 E-value=1.7e-29 Score=196.65 Aligned_cols=213 Identities=24% Similarity=0.323 Sum_probs=152.2
Q ss_pred CCccEEEEecCcccccch-hhHHHHHHHHHHHcCC-CC--CHHHHHH--hcCCChHHHHHHHHHHhCCC----C--CCCH
Q 026543 8 KPITHVIFDMDGLLLDTE-KFYTEVQELILARYNK-TF--DWSLKAK--MMGKKAIEAAQVFVEETGIS----D--KLSA 75 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~-~~~~~~~~~~~~~~g~-~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~--~~~~ 75 (237)
..+++|+|||||||+|+. ..+..+|..+++++|. .. +.+.+.. ..+.+.......+ ...+.. . ....
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 116 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYF-NENGWPTSTIEKAPKDE 116 (286)
T ss_pred cCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHH-HHcCCCccccccCCccc
Confidence 457999999999999999 9999999999999998 33 2332222 2454544443333 222222 0 0011
Q ss_pred ---HH----HHHHHHHHHHhhcC--CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhh---cceeee
Q 026543 76 ---ED----FLVQREETLQTLFP--TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSL---MHHVVR 143 (237)
Q Consensus 76 ---~~----~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~---f~~~~~ 143 (237)
+. +.......+.+... .+.++||+.++|..|+++|++++|+||+...... .+++..+...+ |+.+ +
T Consensus 117 e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~-~~l~~~~~~~~~~~~~~v-~ 194 (286)
T PLN02779 117 EERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVS-KIVNTLLGPERAQGLDVF-A 194 (286)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHhccccccCceEEE-e
Confidence 11 22222233333322 2589999999999999999999999997766555 34554432333 3444 6
Q ss_pred CCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccC
Q 026543 144 GDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFN 223 (237)
Q Consensus 144 ~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~ 223 (237)
++ +.+..||+|+.|..+++++| ++|++|++|||+.+|+++|+++|+.+|+|.++.........++++++++.|+.
T Consensus 195 ~~--~~~~~KP~p~~~~~a~~~~~---~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~ 269 (286)
T PLN02779 195 GD--DVPKKKPDPDIYNLAAETLG---VDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVP 269 (286)
T ss_pred cc--ccCCCCCCHHHHHHHHHHhC---cChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcc
Confidence 66 67788999999999999999 99999999999999999999999999999887654333357899999999987
Q ss_pred CCCCC
Q 026543 224 PKDWG 228 (237)
Q Consensus 224 ~~l~~ 228 (237)
..-++
T Consensus 270 ~~~~~ 274 (286)
T PLN02779 270 LEDFD 274 (286)
T ss_pred hhhhH
Confidence 55443
No 29
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.97 E-value=8.7e-30 Score=194.02 Aligned_cols=211 Identities=18% Similarity=0.175 Sum_probs=149.2
Q ss_pred CCccCCCCCccEEEEecCcccccchhhHHHHHHHHHHHcCCC------CCHHHHHHhcC---C-------C----hHHHH
Q 026543 1 MAAVSSKKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKT------FDWSLKAKMMG---K-------K----AIEAA 60 (237)
Q Consensus 1 m~~~~~~~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~---~-------~----~~~~~ 60 (237)
|....++.++|+|+||+||||+|+.+.+..++..+++.++.. .....+..+.+ . . ....+
T Consensus 1 ~~~~~~~~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (238)
T PRK10748 1 MRFYRPLGRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAI 80 (238)
T ss_pred CccccCCCCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHH
Confidence 433455667899999999999999999888888776554211 11111111000 0 0 11223
Q ss_pred HHHHHHhCCCCCCCHH-HHHHHHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcc
Q 026543 61 QVFVEETGISDKLSAE-DFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMH 139 (237)
Q Consensus 61 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~ 139 (237)
..+++.++++ .... .........+..+.....++||+.++|+.|+++ ++++++||++.. ++..|+..+|+
T Consensus 81 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~------~~~~gl~~~fd 151 (238)
T PRK10748 81 EQAMLDAGLS--AEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ------PELFGLGDYFE 151 (238)
T ss_pred HHHHHHcCCC--HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch------HHHCCcHHhhc
Confidence 4455666654 2111 111111122333334578999999999999876 999999997654 35678999999
Q ss_pred eeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCCc----ccccchhh
Q 026543 140 HVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLDS----SYHSNADQ 214 (237)
Q Consensus 140 ~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~----~~~~~~~~ 214 (237)
.+++++ +.+..||++..|..+++++| ++|++|+||||+. .|+.+|+++|+.+++|..+.... .....++.
T Consensus 152 ~i~~~~--~~~~~KP~p~~~~~a~~~~~---~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~ 226 (238)
T PRK10748 152 FVLRAG--PHGRSKPFSDMYHLAAEKLN---VPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHI 226 (238)
T ss_pred eeEecc--cCCcCCCcHHHHHHHHHHcC---CChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCE
Confidence 999998 78889999999999999999 9999999999994 99999999999999998765421 11245778
Q ss_pred hhhhhcccCCC
Q 026543 215 LLSSLLGFNPK 225 (237)
Q Consensus 215 ~~~~~~el~~~ 225 (237)
.+.+++||.+.
T Consensus 227 ~i~~l~el~~~ 237 (238)
T PRK10748 227 EISRLASLTSL 237 (238)
T ss_pred EECCHHHHHhh
Confidence 89999887554
No 30
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.97 E-value=1.3e-29 Score=209.90 Aligned_cols=207 Identities=15% Similarity=0.190 Sum_probs=160.6
Q ss_pred CCccEEEEecCcccccchhhHHHHHHHHHHHcC------CCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHH
Q 026543 8 KPITHVIFDMDGLLLDTEKFYTEVQELILARYN------KTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQ 81 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (237)
+++++|+|||||||+|+...+..+|.+++++++ ...+.+.+....|.+..+.++.+....+.. ..+.....
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~---~~~~~~~~ 315 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLE---IREQTDAY 315 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchh---HHHHHHHH
Confidence 347999999999999999999999999998874 223456677778888887777776544322 12233333
Q ss_pred HHHHHHhhc--CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHH
Q 026543 82 REETLQTLF--PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIF 159 (237)
Q Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~ 159 (237)
+...+.... ...+++||+.++|+.|+++|++++|+||+...... ..+++.|+..+|+.+++++ +.. .||+|..+
T Consensus 316 ~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~-~~l~~~~l~~~f~~i~~~d--~v~-~~~kP~~~ 391 (459)
T PRK06698 316 FLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLR-AIVSYYDLDQWVTETFSIE--QIN-SLNKSDLV 391 (459)
T ss_pred HHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHH-HHHHHCCcHhhcceeEecC--CCC-CCCCcHHH
Confidence 333333322 34689999999999999999999999997776655 4678889999999999998 553 46778899
Q ss_pred HHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCCC
Q 026543 160 LAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~l 226 (237)
..++++++ |++|++|||+.+|+++|+++|+.+|++.++.........++++++++.|+...+
T Consensus 392 ~~al~~l~-----~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el~~~l 453 (459)
T PRK06698 392 KSILNKYD-----IKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLELKGIL 453 (459)
T ss_pred HHHHHhcC-----cceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHHHHHH
Confidence 99998876 579999999999999999999999999887653333456899999999886544
No 31
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.97 E-value=5.9e-29 Score=187.46 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=105.0
Q ss_pred CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 91 PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 91 ~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
....++||+.++|+.|+++|++++|+||+....... .++..|+..+|+.+++++ +.+..||+|+.|..+++++|
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~-~l~~~~l~~~fd~iv~s~--~~~~~KP~p~~~~~~~~~~~--- 163 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAV-KLEHTGLDAHLDLLLSTH--TFGYPKEDQRLWQAVAEHTG--- 163 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHH-HHHHCCcHHHCCEEEEee--eCCCCCCCHHHHHHHHHHcC---
Confidence 457899999999999999999999999977666554 467789999999999998 88889999999999999999
Q ss_pred CCCCcEEEEecCHHHHHHHHHcCCe-EEEEcCCCCCccc-ccchhhhhhhhcccCC
Q 026543 171 IDSQEILVFEDAPSGVLAAKNAGMS-VVMVPDPRLDSSY-HSNADQLLSSLLGFNP 224 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~G~~-~i~v~~~~~~~~~-~~~~~~~~~~~~el~~ 224 (237)
++|++|+||||+.+|+++|+++|+. +++|..+...... .......++++.++..
T Consensus 164 ~~p~~~l~igDs~~di~aA~~aG~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
T PRK14988 164 LKAERTLFIDDSEPILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIP 219 (224)
T ss_pred CChHHEEEEcCCHHHHHHHHHcCCeEEEEEeCCCCCccchhccCCCcHHHHHHHhh
Confidence 9999999999999999999999998 5778776553221 2223334455555433
No 32
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.97 E-value=7.9e-29 Score=184.11 Aligned_cols=181 Identities=19% Similarity=0.284 Sum_probs=132.4
Q ss_pred ccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCH-------HH--HHHhcCC--C----hHHHHHHHHHHhCCCCCCC
Q 026543 10 ITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDW-------SL--KAKMMGK--K----AIEAAQVFVEETGISDKLS 74 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~-------~~--~~~~~~~--~----~~~~~~~~~~~~~~~~~~~ 74 (237)
+|+|+||+||||+|+... ...+.+++...+..... .. .....|. + ....++.+...++.. ..
T Consensus 1 ik~viFD~dgTLiD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~--~~ 77 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSV-VERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGRLGLE--DD 77 (198)
T ss_pred CcEEEEeCCCcCccHHHH-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHcCCC--CC
Confidence 479999999999999864 34444433222211100 00 0111221 1 124455566667765 33
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCC
Q 026543 75 AEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKP 154 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp 154 (237)
.+......+ ......++||+.++|+.|+++|++++|+||+...... ..++..|+..+|+.+++++ +.+..||
T Consensus 78 ~~~~~~~~~-----~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~-~~l~~~gl~~~fd~i~~s~--~~~~~KP 149 (198)
T TIGR01428 78 ESAADRLAE-----AYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLK-SLVKHAGLDDPFDAVLSAD--AVRAYKP 149 (198)
T ss_pred HHHHHHHHH-----HHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHCCChhhhheeEehh--hcCCCCC
Confidence 332222221 2234679999999999999999999999998776655 4577889999999999999 8889999
Q ss_pred CHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 155 SPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
++..|..+++++| ++|++|++|||+.+|+++|+++|+.+|+|..+..
T Consensus 150 ~~~~~~~~~~~~~---~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~~~ 196 (198)
T TIGR01428 150 APQVYQLALEALG---VPPDEVLFVASNPWDLGGAKKFGFKTAWVNRPGE 196 (198)
T ss_pred CHHHHHHHHHHhC---CChhhEEEEeCCHHHHHHHHHCCCcEEEecCCCC
Confidence 9999999999999 9999999999999999999999999999987543
No 33
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.97 E-value=2.7e-29 Score=183.03 Aligned_cols=175 Identities=29% Similarity=0.459 Sum_probs=146.6
Q ss_pred EEEecCcccccchhhHHHHHHH-HHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q 026543 13 VIFDMDGLLLDTEKFYTEVQEL-ILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQTLFP 91 (237)
Q Consensus 13 vifD~DGTL~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (237)
|+||+||||+++...+.+.+.. +++.++...+.+...+..+.+..+.++.+..+++.. ...+.+.+.+. ....
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~ 74 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGID----PEEIQELFREY--NLES 74 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHH--HHHG
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchh----HHHHHHHhhhh--hhhh
Confidence 7999999999999988888887 477888776566677777777888888888776533 34444444443 1224
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
...++||+.++|+.|+++|++++++||+....+. ..++..|+..+|+.+++++ +.+..||++..|+.++++++ +
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~-~~l~~~~~~~~f~~i~~~~--~~~~~Kp~~~~~~~~~~~~~---~ 148 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIE-RVLERLGLDDYFDEIISSD--DVGSRKPDPDAYRRALEKLG---I 148 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHH-HHHHHTTHGGGCSEEEEGG--GSSSSTTSHHHHHHHHHHHT---S
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCccccc-ccccccccccccccccccc--hhhhhhhHHHHHHHHHHHcC---C
Confidence 5789999999999999999999999998776555 4678889999999999998 88889999999999999999 9
Q ss_pred CCCcEEEEecCHHHHHHHHHcCCeEEEE
Q 026543 172 DSQEILVFEDAPSGVLAAKNAGMSVVMV 199 (237)
Q Consensus 172 ~~~~~~~igD~~~Di~~a~~~G~~~i~v 199 (237)
+|++|++|||+..|+++|+++|+.+|+|
T Consensus 149 ~p~~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 149 PPEEILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp SGGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred CcceEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 9999999999999999999999999986
No 34
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.97 E-value=1.2e-28 Score=219.79 Aligned_cols=209 Identities=24% Similarity=0.306 Sum_probs=169.7
Q ss_pred CCccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHH-HHHHHH
Q 026543 8 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLV-QREETL 86 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 86 (237)
+++++|+|||||||+|+...+.+++..+++++|++.+.+.+....+.+..+.++.+...+++.. ...++..+ .++.+.
T Consensus 73 ~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~ 151 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKG-FDPDAAKKRFFEIYL 151 (1057)
T ss_pred CCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999887777778888887777777666665532 23333322 233222
Q ss_pred HhhcC--CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh-hhcceeeeCCCCCccCCCCCHHHHHHHH
Q 026543 87 QTLFP--TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF-SLMHHVVRGDDPEVKQGKPSPDIFLAAA 163 (237)
Q Consensus 87 ~~~~~--~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~-~~f~~~~~~~~~~~~~~kp~~~~~~~~l 163 (237)
..+.. ...++||+.++|+.|+++|++++|+||.....+. ..++..|+. .+|+.+++++ +....||+|+.|..++
T Consensus 152 ~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~-~~L~~~gl~~~~Fd~iv~~~--~~~~~KP~Pe~~~~a~ 228 (1057)
T PLN02919 152 EKYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVD-ANLAAAGLPLSMFDAIVSAD--AFENLKPAPDIFLAAA 228 (1057)
T ss_pred HHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHH-HHHHHcCCChhHCCEEEECc--ccccCCCCHHHHHHHH
Confidence 22211 2347999999999999999999999997766555 457778885 7899999999 8888999999999999
Q ss_pred HHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCC-cccccchhhhhhhhcccC
Q 026543 164 KRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLD-SSYHSNADQLLSSLLGFN 223 (237)
Q Consensus 164 ~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~-~~~~~~~~~~~~~~~el~ 223 (237)
++++ ++|++|++|||+..|+++|+++||.+|+|.++... ++...+++++++++.|+.
T Consensus 229 ~~lg---v~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~ 286 (1057)
T PLN02919 229 KILG---VPTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNIS 286 (1057)
T ss_pred HHcC---cCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCC
Confidence 9999 99999999999999999999999999999987542 334567889999999985
No 35
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.96 E-value=1.9e-28 Score=182.79 Aligned_cols=178 Identities=23% Similarity=0.271 Sum_probs=136.8
Q ss_pred cEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHh------------------cCCChHHH----HHHHHHHhC
Q 026543 11 THVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKM------------------MGKKAIEA----AQVFVEETG 68 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~----~~~~~~~~~ 68 (237)
|+|+||+||||+|+...+..++.++++++|...+....... .|.+..+. .+..+...+
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999997654332110 13343322 233333333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc--CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCC
Q 026543 69 ISDKLSAEDFLVQREETLQTLF--PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDD 146 (237)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~ 146 (237)
.. ..+.+......++.... ....++||+.++|+.|+++|++++|+||+... . ...++..|+..+|+.+++++
T Consensus 81 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~-~~~l~~~~l~~~fd~i~~s~- 154 (203)
T TIGR02252 81 VP---DPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-L-RGLLEALGLLEYFDFVVTSY- 154 (203)
T ss_pred CC---CchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-H-HHHHHHCCcHHhcceEEeec-
Confidence 22 22334444444443332 23578999999999999999999999997653 3 34578889999999999998
Q ss_pred CCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHHcCCeEEE
Q 026543 147 PEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKNAGMSVVM 198 (237)
Q Consensus 147 ~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~ 198 (237)
+.+..||+|..|..+++++| ++|++|++|||+. +|+++|+++|+.+|+
T Consensus 155 -~~~~~KP~~~~~~~~~~~~~---~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 155 -EVGAEKPDPKIFQEALERAG---ISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred -ccCCCCCCHHHHHHHHHHcC---CChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 88889999999999999999 9999999999998 899999999999874
No 36
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.95 E-value=7.8e-27 Score=171.36 Aligned_cols=175 Identities=30% Similarity=0.462 Sum_probs=126.4
Q ss_pred EEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHH------HHHH
Q 026543 12 HVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQ------REET 85 (237)
Q Consensus 12 ~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 85 (237)
+|+||+||||+++.+.+..... ..+............. .......+.+...++.. .....+... ....
T Consensus 1 ~vlFDlDgtLv~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 74 (183)
T TIGR01509 1 AILFDLDGVLVDTSSAIEKLVN---REEFPLVPDELGVSAV-GKLELALRRWKEKYGRT--MSAEDFYLLYENADIKQLF 74 (183)
T ss_pred CeeeccCCceechHHHHHHHHH---HHhCCCCcHHHHHHHH-HHHHHHhhccccccCCC--CCcHHHHHHHhHHHHHHHH
Confidence 4899999999999886555211 2222222222222221 22233333444434444 344433322 3344
Q ss_pred HHhhcCC--CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHH
Q 026543 86 LQTLFPT--SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAA 163 (237)
Q Consensus 86 ~~~~~~~--~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l 163 (237)
+...... .+++||+.++|+.|+++|++++++||+.... . ....++|+..+|+.+++++ +.+..||+|..|..++
T Consensus 75 ~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~-~~~~~~~l~~~f~~i~~~~--~~~~~KP~~~~~~~~~ 150 (183)
T TIGR01509 75 YDAILDEEKLKPLPGVEPLLEALRARGKKLALLTNSPRDH-A-VLVQELGLRDLFDVVIFSG--DVGRGKPDPDIYLLAL 150 (183)
T ss_pred HHHHHhccCCccCcCHHHHHHHHHHCCCeEEEEeCCchHH-H-HHHHhcCCHHHCCEEEEcC--CCCCCCCCHHHHHHHH
Confidence 4443333 6899999999999999999999999977765 3 4455589999999999998 7889999999999999
Q ss_pred HHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEE
Q 026543 164 KRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMV 199 (237)
Q Consensus 164 ~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 199 (237)
++++ ++|++|++|||+..|+++|+++|+.+|+|
T Consensus 151 ~~~~---~~~~~~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 151 KKLG---LKPEECLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred HHcC---CCcceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence 9999 99999999999999999999999999875
No 37
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.95 E-value=5.9e-27 Score=175.76 Aligned_cols=181 Identities=23% Similarity=0.303 Sum_probs=125.4
Q ss_pred ccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---
Q 026543 10 ITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETL--- 86 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 86 (237)
+++|+||+||||+++.. ....|...+...|.+ ..+....+.+.+.....+.+. .+ ..+.+++...+.+.+
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~--~g---~~~~~~~~~~~~~~~~~~ 74 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK-DFIVTVNITGPDFNPWARTFE--RG---ELTAEAFDGLFRHEYGLR 74 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc-cHHHHHHhcCCCCChHHHHHH--cC---CCCHHHHHHHHHHHhccc
Confidence 58999999999999976 556666554444543 222233333333222222111 01 022222222221111
Q ss_pred -----------Hhh-cCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHH-HHHHhhhhhhhhhcceeeeCCCCCccCCC
Q 026543 87 -----------QTL-FPTSELMPGASHLIRHLHAKGIPMCVATGSLARHF-ELKTQKHRELFSLMHHVVRGDDPEVKQGK 153 (237)
Q Consensus 87 -----------~~~-~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~-~~~~~~~~gl~~~f~~~~~~~~~~~~~~k 153 (237)
... .....++||+.++|+.|+++|++++|+||+..... ........++..+|+.+++++ +.+..|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~--~~~~~K 152 (211)
T TIGR02247 75 LGHDVRIAPVFPLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESC--LEGLRK 152 (211)
T ss_pred cCCCcCchhhHHHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEee--ecCCCC
Confidence 111 12477899999999999999999999999754331 112233457889999999988 788899
Q ss_pred CCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 154 PSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
|+|..|..+++++| ++|++|+||||+..|+.+|+++|+.+|++.++
T Consensus 153 P~p~~~~~~~~~~g---~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 153 PDPRIYQLMLERLG---VAPEECVFLDDLGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred CCHHHHHHHHHHcC---CCHHHeEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence 99999999999999 99999999999999999999999999999764
No 38
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.95 E-value=2.5e-26 Score=170.39 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=131.7
Q ss_pred EEEEecCcccccchhhHHHHHHHHHHHcC-CCCCHHHHHHhcCCChH--------HHHHHHHHHhCC---CCCCCHHHHH
Q 026543 12 HVIFDMDGLLLDTEKFYTEVQELILARYN-KTFDWSLKAKMMGKKAI--------EAAQVFVEETGI---SDKLSAEDFL 79 (237)
Q Consensus 12 ~vifD~DGTL~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~ 79 (237)
+|+|||||||+|+...+..++..+++++| ...+.+.+....|.+.. ..+..++..... ......+.+.
T Consensus 2 ~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (197)
T TIGR01548 2 ALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAVT 81 (197)
T ss_pred ceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHHH
Confidence 68999999999999999999999999997 56666666666654321 111122221110 1124456666
Q ss_pred HHHHHHHHhhc----------CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCc
Q 026543 80 VQREETLQTLF----------PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEV 149 (237)
Q Consensus 80 ~~~~~~~~~~~----------~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~ 149 (237)
..++..+.... ....+.++..++|+.|+++|++++|+||+...... ..++..|+..+|+.+++++ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~-~~l~~~gl~~~f~~~~~~~--~~ 158 (197)
T TIGR01548 82 AQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAA-KFLTTHGLEILFPVQIWME--DC 158 (197)
T ss_pred HHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHH-HHHHHcCchhhCCEEEeec--CC
Confidence 66666654321 12345566799999999999999999997666555 5688899999999999998 66
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHc
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNA 192 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~ 192 (237)
.. ||+|..+..++++++ +++++|++|||+.+|+++|+++
T Consensus 159 ~~-KP~p~~~~~~~~~~~---~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 159 PP-KPNPEPLILAAKALG---VEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred CC-CcCHHHHHHHHHHhC---cCcccEEEEeCCHHHHHHHHhC
Confidence 66 999999999999999 9999999999999999999875
No 39
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.95 E-value=6.8e-26 Score=168.30 Aligned_cols=178 Identities=17% Similarity=0.240 Sum_probs=130.1
Q ss_pred cEEEEecCcccccchhhHH-HHHHHHHHHcCCCC---------CHHHHHHhc-CCChHHHHHHHHHHhCCCCCCCHHHHH
Q 026543 11 THVIFDMDGLLLDTEKFYT-EVQELILARYNKTF---------DWSLKAKMM-GKKAIEAAQVFVEETGISDKLSAEDFL 79 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~~~~-~~~~~~~~~~g~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (237)
.+|+||+||||++.+.... ..+.. ..+... ......... +.+..+..+.+.+.++.. ...+.+.
T Consensus 1 ~~viFDldgvL~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--~~~~~~~ 75 (199)
T PRK09456 1 MLYIFDLGNVIVDIDFNRVLGVWSD---LSRVPLATLKKRFTMGEAFHQHERGEISDEAFAEALCHEMALS--LSYEQFA 75 (199)
T ss_pred CEEEEeCCCccccCcHHHHHHHHHH---hcCCCHHHHHHHHhcCcHHHHHhcCCCCHHHHHHHHHHHhCCC--CCHHHHH
Confidence 4799999999999864221 11111 111110 000111112 245666677888888876 5545544
Q ss_pred HHHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHH
Q 026543 80 VQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIF 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~ 159 (237)
..+...+ ..++||+.++|+.|+++|++++|+||+.............++..+|+.+++++ +.+..||+|+.|
T Consensus 76 ~~~~~~~------~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~--~~~~~KP~p~~~ 147 (199)
T PRK09456 76 HGWQAVF------VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQ--DLGMRKPEARIY 147 (199)
T ss_pred HHHHHHH------hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEec--ccCCCCCCHHHH
Confidence 4443322 35899999999999999999999999776544432223357888999999999 889999999999
Q ss_pred HHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 160 LAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
..+++++| ++|++|+||||+..|+++|+++|+.++++..+..
T Consensus 148 ~~~~~~~~---~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~~~ 189 (199)
T PRK09456 148 QHVLQAEG---FSAADAVFFDDNADNIEAANALGITSILVTDKQT 189 (199)
T ss_pred HHHHHHcC---CChhHeEEeCCCHHHHHHHHHcCCEEEEecCCcc
Confidence 99999999 9999999999999999999999999999987544
No 40
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=175.97 Aligned_cols=128 Identities=22% Similarity=0.269 Sum_probs=109.3
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
..++++++.++|+.++++ ++++++||+...... ..++.+|+.++||.++.++ +.+..||++.+|..+++++| +
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~-~~l~~~gl~~~Fd~v~~s~--~~g~~KP~~~~f~~~~~~~g---~ 169 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQE-RKLRQLGLLDYFDAVFISE--DVGVAKPDPEIFEYALEKLG---V 169 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHH-HHHHHcCChhhhheEEEec--ccccCCCCcHHHHHHHHHcC---C
Confidence 478999999999999999 999999997665555 4577778999999999999 89999999999999999999 9
Q ss_pred CCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCCc-ccccchhhhhhhhcccCCCC
Q 026543 172 DSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLDS-SYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 172 ~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~-~~~~~~~~~~~~~~el~~~l 226 (237)
+|++++||||+. ||+.+|+++||.++++..+.... .....++..+.++.++...+
T Consensus 170 ~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l~~~~ 226 (229)
T COG1011 170 PPEEALFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAELLDLL 226 (229)
T ss_pred CcceEEEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHHHHHH
Confidence 999999999999 88899999999999998766522 11256777788887775443
No 41
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.94 E-value=6.2e-26 Score=166.60 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=123.6
Q ss_pred cEEEEecCcccccchhhHHHHHHHHHH-----HcCCCCCHHH-HH----HhcCCChHHHHHHHHHHhCCCCCCCHHHHHH
Q 026543 11 THVIFDMDGLLLDTEKFYTEVQELILA-----RYNKTFDWSL-KA----KMMGKKAIEAAQVFVEETGISDKLSAEDFLV 80 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~~~~~~~~~~~~-----~~g~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (237)
++|+||+||||+|+...+..++.+.+. ++|++..... .. +..|.+.. .+....+ ...+.+..
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~~~~----~~~~~~~----~~~~~~~~ 72 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGTTLA----GLMILHE----IDADEYLR 72 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHchHHH----HHHHhhC----CCHHHHHH
Confidence 479999999999998888888776654 4565332211 11 11222222 2222222 23343333
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccC----CCCCH
Q 026543 81 QREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQ----GKPSP 156 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~----~kp~~ 156 (237)
.+.... .....++++|+.++|+.|+ .+++|+||+...... ..++..|+..+|+.+++++ +.+. .||+|
T Consensus 73 ~~~~~~--~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~-~~l~~~gl~~~fd~i~~~~--~~~~~~~~~KP~p 144 (184)
T TIGR01993 73 YVHGRL--PYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHAR-RALNRLGIEDCFDGIFCFD--TANPDYLLPKPSP 144 (184)
T ss_pred HHhccC--CHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHH-HHHHHcCcHhhhCeEEEee--cccCccCCCCCCH
Confidence 333211 1124678999999999997 579999997776555 5678889999999999998 6665 59999
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEE
Q 026543 157 DIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMV 199 (237)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 199 (237)
+.|..+++++| ++|++++||||+..|+++|+++|+++|+|
T Consensus 145 ~~~~~~~~~~~---~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 145 QAYEKALREAG---VDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred HHHHHHHHHhC---CCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 99999999999 99999999999999999999999999875
No 42
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.94 E-value=2.4e-25 Score=165.28 Aligned_cols=188 Identities=14% Similarity=0.141 Sum_probs=130.5
Q ss_pred ccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-Hh
Q 026543 10 ITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETL-QT 88 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 88 (237)
+|+|+|||||||+|+. .++..+++++|++. +.+....+.+...... ..++. ..+...+.++.+. ..
T Consensus 2 ~k~viFDlDGTLiD~~----~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~ 68 (197)
T PHA02597 2 KPTILTDVDGVLLSWQ----SGLPYFAQKYNIPT--DHILKMIQDERFRDPG---ELFGC----DQELAKKLIEKYNNSD 68 (197)
T ss_pred CcEEEEecCCceEchh----hccHHHHHhcCCCH--HHHHHHHhHhhhcCHH---HHhcc----cHHHHHHHhhhhhHHH
Confidence 6899999999999954 35667778888743 3434443332222221 12221 2233334444433 22
Q ss_pred hcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhh----hcceeeeCCCCCccCCCCCHHHHHHHHH
Q 026543 89 LFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFS----LMHHVVRGDDPEVKQGKPSPDIFLAAAK 164 (237)
Q Consensus 89 ~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~----~f~~~~~~~~~~~~~~kp~~~~~~~~l~ 164 (237)
......++||+.++|+.|++. ++++++||..... .....+.+++.. +|+.+++++ . .||+|+.+..+++
T Consensus 69 ~~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~-~~~~~~~~~l~~~f~~~f~~i~~~~--~---~~~kp~~~~~a~~ 141 (197)
T PHA02597 69 FIRYLSAYDDALDVINKLKED-YDFVAVTALGDSI-DALLNRQFNLNALFPGAFSEVLMCG--H---DESKEKLFIKAKE 141 (197)
T ss_pred HHHhccCCCCHHHHHHHHHhc-CCEEEEeCCccch-hHHHHhhCCHHHhCCCcccEEEEec--c---CcccHHHHHHHHH
Confidence 334577999999999999987 5788888855443 223455556665 456677666 3 3677899999999
Q ss_pred HcCCCCCCCCcEEEEecCHHHHHHHHHc--CCeEEEEcCCCCCcccccchhhhhhhhcccCC
Q 026543 165 RFEGGPIDSQEILVFEDAPSGVLAAKNA--GMSVVMVPDPRLDSSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 165 ~~~~~~~~~~~~~~igD~~~Di~~a~~~--G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~ 224 (237)
++| |++++||||+.+|+.+|+++ |++++++.++.. .....+++.+.|+.|+..
T Consensus 142 ~~~-----~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~~~ 196 (197)
T PHA02597 142 KYG-----DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDIEN 196 (197)
T ss_pred HhC-----CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHHhc
Confidence 997 68899999999999999999 999999988865 334567799999998753
No 43
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=160.64 Aligned_cols=193 Identities=23% Similarity=0.217 Sum_probs=141.8
Q ss_pred CCCCCccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHH------------------hcC-CChHHHHHHH-H
Q 026543 5 SSKKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAK------------------MMG-KKAIEAAQVF-V 64 (237)
Q Consensus 5 ~~~~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------~~~-~~~~~~~~~~-~ 64 (237)
+..+++|+|+||++|||+...+.....+..+.+.+|++........ +.+ .+...+...+ .
T Consensus 2 ~~~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~ 81 (237)
T KOG3085|consen 2 AELMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVE 81 (237)
T ss_pred CcccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHH
Confidence 3456789999999999999888889999999999999744333221 111 1334444422 3
Q ss_pred HHhCCCCCCCHHHHHH-HHHHHHHhhc-CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceee
Q 026543 65 EETGISDKLSAEDFLV-QREETLQTLF-PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVV 142 (237)
Q Consensus 65 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~ 142 (237)
..++.......++... +....+.... ......++..++++.|++.|..+.++||.+... . .++..+|+..+||.++
T Consensus 82 ~~f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~-~-~~l~~~~l~~~fD~vv 159 (237)
T KOG3085|consen 82 STFGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRL-R-LLLLPLGLSAYFDFVV 159 (237)
T ss_pred HHhccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHH-H-HHhhccCHHHhhhhhh
Confidence 3333321111222221 1112222111 235677888899999999999999999955443 3 5677889999999999
Q ss_pred eCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCC
Q 026543 143 RGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 143 ~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~ 204 (237)
.+. +.+..||+|.+|+.++++++ +.|++|++|||+. ||+++|+++||.++.|.....
T Consensus 160 ~S~--e~g~~KPDp~If~~al~~l~---v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~ 217 (237)
T KOG3085|consen 160 ESC--EVGLEKPDPRIFQLALERLG---VKPEECVHIGDLLENDYEGARNLGWHAILVDNSIT 217 (237)
T ss_pred hhh--hhccCCCChHHHHHHHHHhC---CChHHeEEecCccccccHhHHHcCCEEEEEccccc
Confidence 998 89999999999999999999 9999999999999 999999999999999986544
No 44
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.93 E-value=3.9e-24 Score=152.64 Aligned_cols=154 Identities=25% Similarity=0.374 Sum_probs=117.8
Q ss_pred EEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q 026543 12 HVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQTLFP 91 (237)
Q Consensus 12 ~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (237)
+|+||+||||+|+...+..+|..++++++. +.+.+....|.+.... ..+.. .++++.. +..
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~-~~~~~---------------~~~~~~~-~~~ 61 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE--DFQALKALRGLAEELL-YRIAT---------------SFEELLG-YDA 61 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcc--cHHHHHHHHccChHHH-HHHHH---------------HHHHHhC-cch
Confidence 489999999999999999999999999885 3333333333322221 11111 1111111 223
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
....++|+.++++.|+++|++++|+||+...... ..++.. +..+|+.+++++ +.+ .||++..|.+++++++ +
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~-~~~~~~-l~~~f~~i~~~~--~~~-~Kp~~~~~~~~~~~~~---~ 133 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQK-LLLRKH-LGDYFDLILGSD--EFG-AKPEPEIFLAALESLG---L 133 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHH-HHHHHH-HHhcCcEEEecC--CCC-CCcCHHHHHHHHHHcC---C
Confidence 4567899999999999999999999998776655 355665 788999999888 677 8999999999999999 9
Q ss_pred CCCcEEEEecCHHHHHHHHHcC
Q 026543 172 DSQEILVFEDAPSGVLAAKNAG 193 (237)
Q Consensus 172 ~~~~~~~igD~~~Di~~a~~~G 193 (237)
+| +|++|||+..|+++|+++|
T Consensus 134 ~~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 134 PP-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred CC-CEEEEeCCHHHHHHHHHcc
Confidence 99 9999999999999999987
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.92 E-value=3.1e-24 Score=161.95 Aligned_cols=193 Identities=19% Similarity=0.221 Sum_probs=126.7
Q ss_pred CCCccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHH-HHhc-C-CChHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 026543 7 KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLK-AKMM-G-KKAIEAAQVFVEETGISDKLSAEDFLVQRE 83 (237)
Q Consensus 7 ~~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (237)
++++++++|||||||+++. .+..+++.+|........ .... + .+..+..+.....+.- ...+
T Consensus 11 ~~~~k~iiFD~DGTL~~~~-----~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~------- 75 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAE-----TIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKG---LPVE------- 75 (219)
T ss_pred hccCCEEEEeCcccCCCch-----HHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC---CCHH-------
Confidence 4568999999999999985 345666777764332222 1111 1 1222323222222211 2222
Q ss_pred HHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceee-------eCC-CCCccCCCCC
Q 026543 84 ETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVV-------RGD-DPEVKQGKPS 155 (237)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~-------~~~-~~~~~~~kp~ 155 (237)
.+.......++.||+.++++.|+++|++++|+||+...... .+++.+|+..+|+..+ .+. ......++|+
T Consensus 76 -~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~-~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 153 (219)
T TIGR00338 76 -LLKEVRENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAE-HVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYK 153 (219)
T ss_pred -HHHHHHhcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHH-HHHHHcCCCceEeeEEEEECCEEEEEecCcccCCccc
Confidence 12222234679999999999999999999999997665444 5677788887775322 111 0012234678
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhh--hhcccC
Q 026543 156 PDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLS--SLLGFN 223 (237)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~el~ 223 (237)
+..+..++++++ +++++|+||||+.+|+++|+.+|+.+++ . ..+.....++++++ ++.++.
T Consensus 154 ~~~~~~~~~~~~---~~~~~~i~iGDs~~Di~aa~~ag~~i~~-~---~~~~~~~~a~~~i~~~~~~~~~ 216 (219)
T TIGR00338 154 GKTLLILLRKEG---ISPENTVAVGDGANDLSMIKAAGLGIAF-N---AKPKLQQKADICINKKDLTDIL 216 (219)
T ss_pred HHHHHHHHHHcC---CCHHHEEEEECCHHHHHHHHhCCCeEEe-C---CCHHHHHhchhccCCCCHHHHH
Confidence 999999999999 9999999999999999999999997543 2 22334566778766 445543
No 46
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.92 E-value=2.1e-24 Score=157.30 Aligned_cols=161 Identities=14% Similarity=0.236 Sum_probs=119.6
Q ss_pred EEEEecCcccccchhhHHHHHHHHHHHcCCC---C-----CHHHHHHhcC--CChHH----HHHHHHHHhCCCCCCCHHH
Q 026543 12 HVIFDMDGLLLDTEKFYTEVQELILARYNKT---F-----DWSLKAKMMG--KKAIE----AAQVFVEETGISDKLSAED 77 (237)
Q Consensus 12 ~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~---~-----~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~ 77 (237)
+|+||+||||+|+...+..++..++..++.. . .........+ ....+ ..+.+.+++++. ...+.
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~ 78 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLD--AEPKY 78 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCC--CCHHH
Confidence 5899999999999998888888877765431 0 1111122222 12122 466677777776 44432
Q ss_pred HHHHHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHH
Q 026543 78 FLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPD 157 (237)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~ 157 (237)
. + . +........++||+.++|+ +++|+||+...... ..+++.|+..+|+.+++++ +.+..||+|+
T Consensus 79 ~-~---~-~~~~~~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~-~~l~~~~l~~~fd~v~~~~--~~~~~KP~p~ 143 (175)
T TIGR01493 79 G-E---R-LRDAYKNLPPWPDSAAALA-------RVAILSNASHWAFD-QFAQQAGLPWYFDRAFSVD--TVRAYKPDPV 143 (175)
T ss_pred H-H---H-HHHHHhcCCCCCchHHHHH-------HHhhhhCCCHHHHH-HHHHHCCCHHHHhhhccHh--hcCCCCCCHH
Confidence 1 1 1 1122235779999999998 37899998777655 4678889999999999998 8888999999
Q ss_pred HHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHc
Q 026543 158 IFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNA 192 (237)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~ 192 (237)
.|..+++++| ++|++|+||||+..|+.+|+++
T Consensus 144 ~f~~~~~~~~---~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 144 VYELVFDTVG---LPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHHHHHHHHC---CCHHHeEeEecChhhHHHHhcC
Confidence 9999999999 9999999999999999999864
No 47
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.91 E-value=2.9e-22 Score=149.32 Aligned_cols=204 Identities=14% Similarity=0.092 Sum_probs=133.1
Q ss_pred ccEEEEecCcccccchhhH-------HHHHHHHHHHcCCCCCHHHHHHhcCCC-hHHHHHHHHHHhCCCC-CCCHHHHHH
Q 026543 10 ITHVIFDMDGLLLDTEKFY-------TEVQELILARYNKTFDWSLKAKMMGKK-AIEAAQVFVEETGISD-KLSAEDFLV 80 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (237)
+++|++|+.||+.+..-.. .+.+..++..+......+......+.. .....+.+......+- ......+..
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~lk~lqg 80 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFVNDNYESTIVENLRELGKTPEELILLRKLHAEMDKDRKATPLKTLQG 80 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHHhCCCHHHHHHHHhccCCcHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 4799999999999765321 222333333332221122222222221 1333344444433331 122333433
Q ss_pred H-HHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhh---hhhhhcceeeeCCCCCccCCCCCH
Q 026543 81 Q-REETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHR---ELFSLMHHVVRGDDPEVKQGKPSP 156 (237)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~---gl~~~f~~~~~~~~~~~~~~kp~~ 156 (237)
. +...+.......+++||+.++|+.|+++|++++|+||++..... .++++. ++..+|+.++... . ..||++
T Consensus 81 ~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~-~~~~~~~~~~L~~~f~~~fd~~---~-g~KP~p 155 (220)
T TIGR01691 81 LIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQK-LLFGHSDAGNLTPYFSGYFDTT---V-GLKTEA 155 (220)
T ss_pred HHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHhhccccchhhhcceEEEeC---c-ccCCCH
Confidence 3 56666655556789999999999999999999999998766544 344443 5777788776432 2 369999
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCccccc--chhhhhhhhcc
Q 026543 157 DIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHS--NADQLLSSLLG 221 (237)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~--~~~~~~~~~~e 221 (237)
+.|..+++++| ++|++|+||||+..|+++|+++|+.++++.++.+...... ....++.||++
T Consensus 156 ~~y~~i~~~lg---v~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g~~~~~~~~~~~~~~~~~~~~ 219 (220)
T TIGR01691 156 QSYVKIAGQLG---SPPREILFLSDIINELDAARKAGLHTGQLVRPGNDPVVDPSFPVYPQFPDLNA 219 (220)
T ss_pred HHHHHHHHHhC---cChhHEEEEeCCHHHHHHHHHcCCEEEEEECCCCCCCCcccCCCCCeecCccc
Confidence 99999999999 9999999999999999999999999999987665322111 11445666654
No 48
>PLN02954 phosphoserine phosphatase
Probab=99.90 E-value=6.3e-23 Score=155.34 Aligned_cols=196 Identities=16% Similarity=0.174 Sum_probs=128.2
Q ss_pred CCccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHH-HHHhcC--CChHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 026543 8 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSL-KAKMMG--KKAIEAAQVFVEETGISDKLSAEDFLVQREE 84 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (237)
+++|+|+|||||||++++ .+..+++++|....+.. ...+.+ .+..+.+........ ...+.+. .
T Consensus 10 ~~~k~viFDfDGTL~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~----~ 76 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDE-----GIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFK----PSLSQVE----E 76 (224)
T ss_pred ccCCEEEEeCCCcccchH-----HHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcC----CCHHHHH----H
Confidence 457999999999999985 45777888887533333 333333 233333333222221 1222222 2
Q ss_pred HHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh--hhccee--------eeCCCC--CccCC
Q 026543 85 TLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF--SLMHHV--------VRGDDP--EVKQG 152 (237)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~--~~f~~~--------~~~~~~--~~~~~ 152 (237)
..+.. ...++||+.++++.|+++|++++|+|++....+. .+++.+|+. .+|+.. +.+.+. .....
T Consensus 77 ~~~~~--~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~-~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 153 (224)
T PLN02954 77 FLEKR--PPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIA-PVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRS 153 (224)
T ss_pred HHHHc--cCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHH-HHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCC
Confidence 22221 2568999999999999999999999997766554 567888886 345321 111100 11235
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC-CcccccchhhhhhhhcccCC
Q 026543 153 KPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL-DSSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 153 kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~-~~~~~~~~~~~~~~~~el~~ 224 (237)
++++..+..++++++ . +++++|||+.+|+++++++|+.++....+.. .+.....++++++++.|+..
T Consensus 154 ~~K~~~i~~~~~~~~---~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~ 221 (224)
T PLN02954 154 GGKAEAVQHIKKKHG---Y--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDLIE 221 (224)
T ss_pred ccHHHHHHHHHHHcC---C--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHHHH
Confidence 678899999999888 5 5899999999999999988887654433222 22335568999999988754
No 49
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.89 E-value=9.4e-23 Score=151.90 Aligned_cols=176 Identities=18% Similarity=0.158 Sum_probs=112.6
Q ss_pred CccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHH-H-HhcCC-ChHHHHHHHHHHh-CCCCCCCHHHHHHHHHH
Q 026543 9 PITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLK-A-KMMGK-KAIEAAQVFVEET-GISDKLSAEDFLVQREE 84 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 84 (237)
++|+|+|||||||+++... +..+...+|........ . ...|. +..+..+.....+ +.......+.
T Consensus 3 ~~k~viFD~DGTLid~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------- 71 (201)
T TIGR01491 3 MIKLIIFDLDGTLTDVMSS----WEYLHRRLETCGLAKKNAELFFSGRISYEEWARLDASLWKRRSGRLRREE------- 71 (201)
T ss_pred cceEEEEeCCCCCcCCccH----HHHHHHHhCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcccCCCHHH-------
Confidence 5789999999999997643 23333445543222111 1 11222 2222222221111 1100011111
Q ss_pred HHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCC----------CC
Q 026543 85 TLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQG----------KP 154 (237)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~----------kp 154 (237)
+........++||+.++|+.|+++|++++|+||+....+. .+++.+|+..+|+..+..+ +.+.. .+
T Consensus 72 -~~~~~~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~-~~l~~~g~~~~~~~~~~~~--~~g~~~p~~~~~~~~~~ 147 (201)
T TIGR01491 72 -VEEIFKEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAK-KVAEKLNPDYVYSNELVFD--EKGFIQPDGIVRVTFDN 147 (201)
T ss_pred -HHHHHHhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHH-HHHHHhCCCeEEEEEEEEc--CCCeEecceeeEEcccc
Confidence 2222234679999999999999999999999997665444 5678888877776555443 22222 23
Q ss_pred CHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 155 SPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
++..+..++++++ +++++++||||+.+|+++|+.+|+.++..+.+
T Consensus 148 k~~~~~~~~~~~~---~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~ 192 (201)
T TIGR01491 148 KGEAVERLKRELN---PSLTETVAVGDSKNDLPMFEVADISISLGDEG 192 (201)
T ss_pred HHHHHHHHHHHhC---CCHHHEEEEcCCHhHHHHHHhcCCeEEECCCc
Confidence 4468889999999 99999999999999999999999987765543
No 50
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.89 E-value=1.5e-22 Score=147.26 Aligned_cols=126 Identities=20% Similarity=0.243 Sum_probs=96.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhh--------------HHHHHHhhhhhhhhhcceeeeCCC---------CCc
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLAR--------------HFELKTQKHRELFSLMHHVVRGDD---------PEV 149 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~--------------~~~~~~~~~~gl~~~f~~~~~~~~---------~~~ 149 (237)
..++||+.++|+.|+++|++++|+||.... ......+...++. |+.++.+.. ...
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~ 102 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYYCPHHPEGVEEFRQVC 102 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEECCCCCcccccccCCC
Confidence 568999999999999999999999997641 0011122222332 555543210 034
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeE-EEEcCCCCCcc-cccchhhhhhhhcccC
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSV-VMVPDPRLDSS-YHSNADQLLSSLLGFN 223 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~-i~v~~~~~~~~-~~~~~~~~~~~~~el~ 223 (237)
...||+|..|..++++++ +++++|+||||+.+|+++|+++|+.+ ++|.++..... ....++++++++.||.
T Consensus 103 ~~~KP~p~~~~~a~~~~~---~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 103 DCRKPKPGMLLQARKELH---IDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred CCCCCCHHHHHHHHHHcC---cChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence 468999999999999999 99999999999999999999999998 79988765332 2356999999999874
No 51
>PRK06769 hypothetical protein; Validated
Probab=99.89 E-value=8.5e-23 Score=147.77 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=98.5
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhh--------HHHHHHhhhhhhhhhcceee-eCCCCCccCCCCCHHHHHHHH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLAR--------HFELKTQKHRELFSLMHHVV-RGDDPEVKQGKPSPDIFLAAA 163 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~--------~~~~~~~~~~gl~~~f~~~~-~~~~~~~~~~kp~~~~~~~~l 163 (237)
..++||+.++|+.|+++|++++|+||.... .+. ..++..|+..+|.... +++ .....||+|..|..++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~-~~l~~~g~~~~~~~~~~~~~--~~~~~KP~p~~~~~~~ 103 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFV-QELKGFGFDDIYLCPHKHGD--GCECRKPSTGMLLQAA 103 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHH-HHHHhCCcCEEEECcCCCCC--CCCCCCCCHHHHHHHH
Confidence 558999999999999999999999996531 111 2244445544333222 344 4567899999999999
Q ss_pred HHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCc--------ccccchhhhhhhhcccCCC
Q 026543 164 KRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDS--------SYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 164 ~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~--------~~~~~~~~~~~~~~el~~~ 225 (237)
++++ ++|++|+||||+.+|+.+|+++|+.+|+|.++.... .....++++++++.|+...
T Consensus 104 ~~l~---~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~ 170 (173)
T PRK06769 104 EKHG---LDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVNW 170 (173)
T ss_pred HHcC---CCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHHH
Confidence 9999 999999999999999999999999999999875421 2245688999999988554
No 52
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.88 E-value=1.7e-22 Score=147.70 Aligned_cols=129 Identities=22% Similarity=0.191 Sum_probs=98.6
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhh--------------HHHHHHhhhhhhhhhcceeeeCCC---CCccCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLAR--------------HFELKTQKHRELFSLMHHVVRGDD---PEVKQGKPS 155 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~--------------~~~~~~~~~~gl~~~f~~~~~~~~---~~~~~~kp~ 155 (237)
..++||+.++|+.|+++|++++|+||.... ......++..|+ .|+.++.+.+ ...+..||+
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~~i~~~~~~~~~~~~~~KP~ 105 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLDGIYYCPHHPEDGCDCRKPK 105 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcCCCCC
Confidence 568999999999999999999999996521 011122333344 3676664321 035678999
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCc-ccccch--hhhhhhhcccCCCC
Q 026543 156 PDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDS-SYHSNA--DQLLSSLLGFNPKD 226 (237)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~-~~~~~~--~~~~~~~~el~~~l 226 (237)
|..|..++++++ ++|++|+||||+.+|+.+|+++|+.++++.++.... .....+ +++++++.|+...+
T Consensus 106 p~~~~~~~~~l~---~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~~~l 176 (181)
T PRK08942 106 PGMLLSIAERLN---IDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLPQAL 176 (181)
T ss_pred HHHHHHHHHHcC---CChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHHHHHH
Confidence 999999999999 999999999999999999999999999998876532 223445 88999998876543
No 53
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.88 E-value=1.7e-21 Score=153.04 Aligned_cols=187 Identities=17% Similarity=0.200 Sum_probs=122.9
Q ss_pred CCCccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHH--HhcC-CChHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 026543 7 KKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKA--KMMG-KKAIEAAQVFVEETGISDKLSAEDFLVQRE 83 (237)
Q Consensus 7 ~~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (237)
.+++++|+|||||||+.. +++..+++..|......... ...+ ....+.+........- .. +..
T Consensus 107 ~~~~~LvvfDmDGTLI~~-----e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g---~~-~~i----- 172 (322)
T PRK11133 107 LRTPGLLVMDMDSTAIQI-----ECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKG---AD-ANI----- 172 (322)
T ss_pred ccCCCEEEEECCCCCcch-----HHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCC---CC-HHH-----
Confidence 356899999999999944 36677777777744332221 1222 2222322222111110 11 111
Q ss_pred HHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcc-------eeeeCC-CCCccCCCCC
Q 026543 84 ETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMH-------HVVRGD-DPEVKQGKPS 155 (237)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~-------~~~~~~-~~~~~~~kp~ 155 (237)
++......+++||+.++++.|+++|++++|+|++.... ...+.+.+|+...+. ..+.+. ......++||
T Consensus 173 --l~~v~~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~-~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K 249 (322)
T PRK11133 173 --LQQVRENLPLMPGLTELVLKLQALGWKVAIASGGFTYF-ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYK 249 (322)
T ss_pred --HHHHHHhCCCChhHHHHHHHHHHcCCEEEEEECCcchh-HHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccH
Confidence 12222347899999999999999999999999977654 335666777754332 222221 0012346899
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhh
Q 026543 156 PDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLS 217 (237)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~ 217 (237)
++.+..+++++| +++++|++|||+.||++|++.+|+.+++ +..+..+..++..++
T Consensus 250 ~~~L~~la~~lg---i~~~qtIaVGDg~NDl~m~~~AGlgiA~----nAkp~Vk~~Ad~~i~ 304 (322)
T PRK11133 250 ADTLTRLAQEYE---IPLAQTVAIGDGANDLPMIKAAGLGIAY----HAKPKVNEQAQVTIR 304 (322)
T ss_pred HHHHHHHHHHcC---CChhhEEEEECCHHHHHHHHHCCCeEEe----CCCHHHHhhCCEEec
Confidence 999999999999 9999999999999999999999987665 344445667777765
No 54
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=135.09 Aligned_cols=201 Identities=16% Similarity=0.166 Sum_probs=137.3
Q ss_pred CCCccEEEEecCcccccchhhHHHHHH----HH-HHHcCCCCCHHHHHH-hcCCChHHHHHHHHHHhCCCCCCCHHHHHH
Q 026543 7 KKPITHVIFDMDGLLLDTEKFYTEVQE----LI-LARYNKTFDWSLKAK-MMGKKAIEAAQVFVEETGISDKLSAEDFLV 80 (237)
Q Consensus 7 ~~~~~~vifD~DGTL~~~~~~~~~~~~----~~-~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (237)
.+++++++||+|.||+.....+..... ++ .+++|+..+...-.. -........++.+... +.. ....++.+
T Consensus 12 ~~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL~~~-~~~--~d~deY~~ 88 (244)
T KOG3109|consen 12 GPNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGLKAV-GYI--FDADEYHR 88 (244)
T ss_pred CccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHHHHh-ccc--CCHHHHHH
Confidence 457899999999999987765554444 33 356677544322111 0001111222222221 212 33444444
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCC--CC--CccCCCCCH
Q 026543 81 QREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGD--DP--EVKQGKPSP 156 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~--~~--~~~~~kp~~ 156 (237)
+.....- ...++|.+-++++|-.|++++ .+++||+...+.. +.++.+|+.++|+.+++.+ .+ ..-..||.+
T Consensus 89 ~V~~~LP--lq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~-r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~ 163 (244)
T KOG3109|consen 89 FVHGRLP--LQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAI-RILKKLGIEDCFEGIICFETLNPIEKTVVCKPSE 163 (244)
T ss_pred HhhccCc--HhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHH-HHHHHhChHHhccceeEeeccCCCCCceeecCCH
Confidence 3332211 123788999999999998764 8999998887766 5789999999999999875 10 122579999
Q ss_pred HHHHHHHHHcCCCCCC-CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhccc
Q 026543 157 DIFLAAAKRFEGGPID-SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGF 222 (237)
Q Consensus 157 ~~~~~~l~~~~~~~~~-~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el 222 (237)
++|+++.+..| +. |.+++||+||.++|.+|++.||.+++|..... ..+++.++.+..+.
T Consensus 164 ~afE~a~k~ag---i~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~~----~~~~d~~l~~ih~~ 223 (244)
T KOG3109|consen 164 EAFEKAMKVAG---IDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREHK----IKGVDYALEQIHNN 223 (244)
T ss_pred HHHHHHHHHhC---CCCcCceEEEcCchhhHHHHHhccceeEEEEeeec----ccchHHHHHHhhch
Confidence 99999999999 88 99999999999999999999999999977554 35566666666555
No 55
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.87 E-value=5.9e-21 Score=143.31 Aligned_cols=147 Identities=18% Similarity=0.144 Sum_probs=108.2
Q ss_pred EEEEecCcccccchhhHHHHHHHHHHHcCCC-CCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhc
Q 026543 12 HVIFDMDGLLLDTEKFYTEVQELILARYNKT-FDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQTLF 90 (237)
Q Consensus 12 ~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (237)
+|+||+||||+|+.+.+ .+|.. .+.+.+..+.+.. +.+.+.... .
T Consensus 65 aViFDlDgTLlDSs~~~---------~~G~~~~s~~~~~~l~g~~----------------------~w~~~~~~~---~ 110 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGF---------WRGKKTFSPGSEDYLKNQV----------------------FWEKVNNGW---D 110 (237)
T ss_pred EEEEeCCCccccCcHHH---------hCCcccCCHHHhhhhcChH----------------------HHHHHHHhc---c
Confidence 99999999999999765 15554 2333333333321 111111111 1
Q ss_pred CCCCCCccHHHHHHHHHhCCCCEEEEeCCh---hhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcC
Q 026543 91 PTSELMPGASHLIRHLHAKGIPMCVATGSL---ARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFE 167 (237)
Q Consensus 91 ~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~---~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~ 167 (237)
....+.+++.++|+.++++|++++++||.. .......+++.+|+..+|+.+++++ .....||.+. .++++++
T Consensus 111 ~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d--~~~~~Kp~~~---~~l~~~~ 185 (237)
T TIGR01672 111 EFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGD--KPGQYQYTKT---QWIQDKN 185 (237)
T ss_pred cCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCC--CCCCCCCCHH---HHHHhCC
Confidence 235577779999999999999999999973 3335556788899999999999888 6666777764 3567787
Q ss_pred CCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 168 GGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 168 ~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
+ ++||||+.+|+.+|+++|++++.|.++.+
T Consensus 186 ---i----~i~vGDs~~DI~aAk~AGi~~I~V~~g~~ 215 (237)
T TIGR01672 186 ---I----RIHYGDSDNDITAAKEAGARGIRILRASN 215 (237)
T ss_pred ---C----eEEEeCCHHHHHHHHHCCCCEEEEEecCC
Confidence 5 79999999999999999999999988776
No 56
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.86 E-value=2.2e-21 Score=136.91 Aligned_cols=105 Identities=28% Similarity=0.345 Sum_probs=82.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhh--------------HHHHHHhhhhhhhhh--cceee-eCCCCCccCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLAR--------------HFELKTQKHRELFSL--MHHVV-RGDDPEVKQGKPS 155 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~--------------~~~~~~~~~~gl~~~--f~~~~-~~~~~~~~~~kp~ 155 (237)
..++||+.++|+.|+++|++++|+||.... ......++.+|+... |.... +++ ..+..||+
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~--~~~~~KP~ 103 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPAD--NCSCRKPK 103 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCC--CCCCCCCC
Confidence 458999999999999999999999996521 122234556666421 11111 133 44567999
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 156 PDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
++.++.++++++ +++++|+||||+..|+++|+++|+++++|..|
T Consensus 104 ~~~~~~~~~~~~---~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 104 PGLILEALKRLG---VDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHHHcC---CChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 999999999999 99999999999999999999999999999764
No 57
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.85 E-value=4.7e-22 Score=142.30 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=91.8
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh---------hhcceeeeCCCCCccCCCCCHHHHHHH
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF---------SLMHHVVRGDDPEVKQGKPSPDIFLAA 162 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~---------~~f~~~~~~~~~~~~~~kp~~~~~~~~ 162 (237)
...++||+.++|+.|+++|++++|+||+.........++.+++. .+|+.+++++ .....||.+..+..+
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~--~~~~~kp~~~i~~~~ 120 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIY--KPNKAKQLEMILQKV 120 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeecc--CCchHHHHHHHHHHh
Confidence 47899999999999999999999999873444444567888887 9999999988 555667777777777
Q ss_pred HHHc--CCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 163 AKRF--EGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 163 l~~~--~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
.+.+ + ++|++|+||||++.|+++|+++|+.++++.++..
T Consensus 121 ~~~~~~g---l~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~ 161 (174)
T TIGR01685 121 NKVDPSV---LKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMD 161 (174)
T ss_pred hhcccCC---CCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCcc
Confidence 7777 8 9999999999999999999999999999988754
No 58
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.85 E-value=1.2e-20 Score=134.39 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=88.5
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCCh--------------hhHHHHHHhhhhhhhhhccee-ee----CCCCCccCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSL--------------ARHFELKTQKHRELFSLMHHV-VR----GDDPEVKQGK 153 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~--------------~~~~~~~~~~~~gl~~~f~~~-~~----~~~~~~~~~k 153 (237)
+.++||+.++|+.|+++|++++|+||.. .......+++..|+. |+.+ ++ ++ +....|
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~--~~~~~K 103 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDD--NCDCRK 103 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCC--CCCCCC
Confidence 6799999999999999999999999952 122333566777775 7655 44 45 677889
Q ss_pred CCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 154 PSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
|++..+..++++++ +++++++||||+.+|+++|+++|+++++|.++.-
T Consensus 104 P~~~~~~~~~~~~~---~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~~~ 151 (161)
T TIGR01261 104 PKIKLLEPYLKKNL---IDKARSYVIGDRETDMQLAENLGIRGIQYDEEEL 151 (161)
T ss_pred CCHHHHHHHHHHcC---CCHHHeEEEeCCHHHHHHHHHCCCeEEEEChhhc
Confidence 99999999999999 9999999999999999999999999999987643
No 59
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.83 E-value=1.3e-19 Score=136.56 Aligned_cols=190 Identities=13% Similarity=0.171 Sum_probs=120.7
Q ss_pred cEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHH-h--cCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 026543 11 THVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAK-M--MGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQ 87 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (237)
++|+|||||||++++..+ . ++++++. ..++...+ + ...+..+.++..++.+... ..+++.+.+
T Consensus 4 ~~vifDfDgTi~~~d~~~-~----~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~---~~~~~~~~~----- 69 (219)
T PRK09552 4 IQIFCDFDGTITNNDNII-A----IMKKFAP-PEWEELKDDILSQELSIQEGVGQMFQLLPSN---LKEEIIQFL----- 69 (219)
T ss_pred cEEEEcCCCCCCcchhhH-H----HHHHhCH-HHHHHHHHHHHhCCcCHHHHHHHHHHhCCCC---chHHHHHHH-----
Confidence 589999999999988643 2 3344443 22332221 1 1224556666666654322 112222211
Q ss_pred hhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhh--hc--ceeeeCCCCCccCCCCCHHH-----
Q 026543 88 TLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFS--LM--HHVVRGDDPEVKQGKPSPDI----- 158 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~--~f--~~~~~~~~~~~~~~kp~~~~----- 158 (237)
.....++||+.++++.|+++|++++|+|++....+. .+++.. +.. .+ +..+.++ .....||.|..
T Consensus 70 --~~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~-~il~~~-~~~~~i~~n~~~~~~~--~~~~~kp~p~~~~~~~ 143 (219)
T PRK09552 70 --LETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVY-PLLQGL-IPKEQIYCNGSDFSGE--YITITWPHPCDEHCQN 143 (219)
T ss_pred --HhCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHH-HHHHHh-CCcCcEEEeEEEecCC--eeEEeccCCccccccc
Confidence 234789999999999999999999999998765544 566655 432 22 3334444 44555665543
Q ss_pred -----HHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC-Cc-ccccchhhhhhhhcccCCCC
Q 026543 159 -----FLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL-DS-SYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 159 -----~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~-~~-~~~~~~~~~~~~~~el~~~l 226 (237)
+..++++++ .++++|+||||+.+|+++|+.+|+..+ .+.- .. .....+...+++|.|+...+
T Consensus 144 ~~~~~K~~~l~~~~---~~~~~~i~iGDs~~Di~aa~~Ag~~~a---~~~l~~~~~~~~~~~~~~~~f~ei~~~l 212 (219)
T PRK09552 144 HCGCCKPSLIRKLS---DTNDFHIVIGDSITDLEAAKQADKVFA---RDFLITKCEELGIPYTPFETFHDVQTEL 212 (219)
T ss_pred cCCCchHHHHHHhc---cCCCCEEEEeCCHHHHHHHHHCCccee---HHHHHHHHHHcCCCccccCCHHHHHHHH
Confidence 457889999 999999999999999999999998333 2211 11 12334666778888875443
No 60
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.83 E-value=1.8e-19 Score=134.65 Aligned_cols=192 Identities=11% Similarity=0.080 Sum_probs=117.2
Q ss_pred ccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhh
Q 026543 10 ITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQTL 89 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (237)
+++|+|||||||++ +.|..+++++|.+...... .........+..-..... ....+.+++ ...
T Consensus 1 ~~~v~FD~DGTL~~------~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~l~-~~~~~~~~i--------~~~ 63 (205)
T PRK13582 1 MEIVCLDLEGVLVP------EIWIAFAEKTGIPELRATT--RDIPDYDVLMKQRLDILD-EHGLGLADI--------QEV 63 (205)
T ss_pred CeEEEEeCCCCChh------hHHHHHHHHcCChHHHHHh--cCCCCHHHHHHHHHHHHH-HcCCCHHHH--------HHH
Confidence 47999999999993 2455666777764221100 001112222222222111 000223333 222
Q ss_pred cCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCC--ccCCCCCHHHHHHHHHHcC
Q 026543 90 FPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPE--VKQGKPSPDIFLAAAKRFE 167 (237)
Q Consensus 90 ~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~--~~~~kp~~~~~~~~l~~~~ 167 (237)
....+++||+.++++.|+++ ++++|+||+...... .+++.+|+..+|+..+...+.. .+..++.|.....++++++
T Consensus 64 ~~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~-~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~ 141 (205)
T PRK13582 64 IATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAG-PLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALK 141 (205)
T ss_pred HHhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHH-HHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHH
Confidence 33477899999999999999 999999997776555 5778888888876544322001 1122334445567777888
Q ss_pred CCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhh-hhhhhcccCCCC
Q 026543 168 GGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQ-LLSSLLGFNPKD 226 (237)
Q Consensus 168 ~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~-~~~~~~el~~~l 226 (237)
..+.+|+||||+.+|+++++.+|+... +.. ........++. +++++.|+...+
T Consensus 142 ---~~~~~~v~iGDs~~D~~~~~aa~~~v~-~~~--~~~~~~~~~~~~~~~~~~el~~~l 195 (205)
T PRK13582 142 ---SLGYRVIAAGDSYNDTTMLGEADAGIL-FRP--PANVIAEFPQFPAVHTYDELLAAI 195 (205)
T ss_pred ---HhCCeEEEEeCCHHHHHHHHhCCCCEE-ECC--CHHHHHhCCcccccCCHHHHHHHH
Confidence 778999999999999999999997543 322 21122234444 788888875443
No 61
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.83 E-value=7.6e-20 Score=127.01 Aligned_cols=98 Identities=26% Similarity=0.404 Sum_probs=81.2
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCCh--------hhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSL--------ARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAK 164 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~--------~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~ 164 (237)
..++|++.++|+.|+++|++++++||+. ...+. ..++.+++. ++.++... ...||+++.|..+++
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~-~~l~~~~l~--~~~~~~~~----~~~KP~~~~~~~~~~ 96 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVA-RRLEELGVP--IDVLYACP----HCRKPKPGMFLEALK 96 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHH-HHHHHCCCC--EEEEEECC----CCCCCChHHHHHHHH
Confidence 4589999999999999999999999976 43333 456776764 33333222 357999999999999
Q ss_pred Hc-CCCCCCCCcEEEEec-CHHHHHHHHHcCCeEEEEc
Q 026543 165 RF-EGGPIDSQEILVFED-APSGVLAAKNAGMSVVMVP 200 (237)
Q Consensus 165 ~~-~~~~~~~~~~~~igD-~~~Di~~a~~~G~~~i~v~ 200 (237)
++ + ++|++++|||| +.+|+++|+++|+.+|++.
T Consensus 97 ~~~~---~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 97 RFNE---IDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred HcCC---CChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 99 8 99999999999 6899999999999999985
No 62
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.80 E-value=2.7e-19 Score=139.41 Aligned_cols=122 Identities=23% Similarity=0.259 Sum_probs=94.0
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeee---CCCCCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVR---GDDPEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~---~~~~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
.++++.++++.|+++|+ ++|+||.+............++..+|+.+.. .+ ....+||+|..+..++++++ +
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~--~~~~gKP~p~~~~~~~~~~~---~ 217 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQ--PLVVGKPSPYMFECITENFS---I 217 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCc--eeccCCCCHHHHHHHHHHhC---C
Confidence 47789999999998886 7899996653322122334455566665543 34 45578999999999999999 9
Q ss_pred CCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCCcc-c---------ccchhhhhhhhccc
Q 026543 172 DSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLDSS-Y---------HSNADQLLSSLLGF 222 (237)
Q Consensus 172 ~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~-~---------~~~~~~~~~~~~el 222 (237)
+|++|+||||+. .|+++|+++|+++++|.+|..... . ...|+++++++.|+
T Consensus 218 ~~~~~lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 218 DPARTLMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred ChhhEEEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 999999999996 999999999999999999876321 1 23689999988875
No 63
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.80 E-value=5.4e-19 Score=123.36 Aligned_cols=103 Identities=30% Similarity=0.398 Sum_probs=88.4
Q ss_pred CCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCC----------------CC
Q 026543 91 PTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQG----------------KP 154 (237)
Q Consensus 91 ~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~----------------kp 154 (237)
....+++++.++++.|+++|++++++|++...... ..++..++..+++.+++.. ..... ||
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~-~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVL-ELLEELGLDDYFDPVITSN--GAAIYYPKEGLFLGGGPFDIGKP 97 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHH-HHHHHcCCchhhhheeccc--hhhhhcccccccccccccccCCC
Confidence 34789999999999999999999999997766554 4567778877888888766 33333 99
Q ss_pred CHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEE
Q 026543 155 SPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMV 199 (237)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 199 (237)
++..+..++++++ .+++++++|||+.+|+++++.+|+.+++|
T Consensus 98 ~~~~~~~~~~~~~---~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 98 NPDKLLAALKLLG---VDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred CHHHHHHHHHHcC---CChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 9999999999999 99999999999999999999999998875
No 64
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.80 E-value=4.9e-18 Score=125.14 Aligned_cols=159 Identities=15% Similarity=0.173 Sum_probs=100.0
Q ss_pred EEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCC----ChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 026543 12 HVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGK----KAIEAAQVFVEETGISDKLSAEDFLVQREETLQ 87 (237)
Q Consensus 12 ~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (237)
+|+|||||||++.+.. ..+++.++.............. +..+.+.......+ ...+.+.+..
T Consensus 3 ~iiFD~dgTL~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----- 68 (188)
T TIGR01489 3 VVVSDFDGTITLNDSD-----DWITDKFGPPEANRLLDGVLSKTLSIKFMDRRMKGLLPSG----LKEDEILEVL----- 68 (188)
T ss_pred EEEEeCCCcccCCCch-----HHHHHhcCcchhhHHHHHHhhcCCchHHHHHHHHHHhhcC----CCHHHHHHHH-----
Confidence 6899999999998753 2344445432212222222211 11122222222222 2333333322
Q ss_pred hhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCC------------------Cc
Q 026543 88 TLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDP------------------EV 149 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~------------------~~ 149 (237)
...+++||+.++++.|+++|++++|+||+....+. .+++..++..+|+.+++.+.. ..
T Consensus 69 ---~~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~-~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~ 144 (188)
T TIGR01489 69 ---KSAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFID-PVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSC 144 (188)
T ss_pred ---HhCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHH-HHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcC
Confidence 23689999999999999999999999997766555 467888899999998875410 11
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCC
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGM 194 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~ 194 (237)
..+.+|+..++.++++. +++++||||+.+|+++|+.+++
T Consensus 145 ~~g~~K~~~~~~~~~~~------~~~~i~iGD~~~D~~aa~~~d~ 183 (188)
T TIGR01489 145 PCGCCKGKVIHKLSEPK------YQHIIYIGDGVTDVCPAKLSDV 183 (188)
T ss_pred CCCCCHHHHHHHHHhhc------CceEEEECCCcchhchHhcCCc
Confidence 12334555555554331 6799999999999999999974
No 65
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.79 E-value=5.9e-18 Score=125.75 Aligned_cols=172 Identities=20% Similarity=0.279 Sum_probs=114.4
Q ss_pred CCccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHH--HHHHhcCC-ChHHHHHHHHH-HhCCCCCCCHHHHHHHHH
Q 026543 8 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWS--LKAKMMGK-KAIEAAQVFVE-ETGISDKLSAEDFLVQRE 83 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (237)
++.++++|||||||++ ...+..+....|....-. ....+.+. ......+.... -.| .+.+.+....+
T Consensus 3 ~~~~L~vFD~D~TLi~-----~~~~~~~~~~~g~~~~v~~~t~~~~~~~~~~~~~~~~~v~~l~g----~~~~~v~~~~~ 73 (212)
T COG0560 3 RMKKLAVFDLDGTLIN-----AELIDELARGAGVGEEVLAITERAMRGELDFEESLRLRVALLKG----LPVEVLEEVRE 73 (212)
T ss_pred CccceEEEecccchhh-----HHHHHHHHHHhCCHHHHHHHHHHHhcccccHHHHHHHHHHHhCC----CCHHHHHHHHH
Confidence 4568999999999998 334555555555532211 11111111 11222211111 112 44555444444
Q ss_pred HHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCC-----C---ccCCCCC
Q 026543 84 ETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDP-----E---VKQGKPS 155 (237)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~-----~---~~~~kp~ 155 (237)
+. .+++||+.++++.++++|++++|+|++.. ....++.+.+|++..+...+..++. . ....+-|
T Consensus 74 ~~-------~~l~~ga~elv~~lk~~G~~v~iiSgg~~-~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K 145 (212)
T COG0560 74 EF-------LRLTPGAEELVAALKAAGAKVVIISGGFT-FLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGK 145 (212)
T ss_pred hc-------CcCCccHHHHHHHHHHCCCEEEEEcCChH-HHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchH
Confidence 43 78999999999999999999999999666 4555788999988766544333210 1 1123346
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEE
Q 026543 156 PDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMV 199 (237)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 199 (237)
...+..+++++| +++++++++|||.||+.|.+.+|.+.+.-
T Consensus 146 ~~~l~~~~~~~g---~~~~~~~a~gDs~nDlpml~~ag~~ia~n 186 (212)
T COG0560 146 AKALRELAAELG---IPLEETVAYGDSANDLPMLEAAGLPIAVN 186 (212)
T ss_pred HHHHHHHHHHcC---CCHHHeEEEcCchhhHHHHHhCCCCeEeC
Confidence 788889999999 99999999999999999999999876653
No 66
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.79 E-value=1.5e-19 Score=138.94 Aligned_cols=127 Identities=19% Similarity=0.162 Sum_probs=99.1
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCC-CccCCCCCHHHHHHHHHHcCCCCCCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDP-EVKQGKPSPDIFLAAAKRFEGGPIDS 173 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~-~~~~~kp~~~~~~~~l~~~~~~~~~~ 173 (237)
.++++.+.++.|++.+.+++++||.+..... ......|+..+|+.+.+.... ....+||++..|..++++++ ++|
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~-~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~---~~~ 196 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKR-KDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATG---CEP 196 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcC-CCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhC---CCh
Confidence 3568888899999888999999996654332 234556777788776654310 22247999999999999999 999
Q ss_pred CcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCC----cccccchhhhhhhhcccCCC
Q 026543 174 QEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLD----SSYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 174 ~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~----~~~~~~~~~~~~~~~el~~~ 225 (237)
++++||||+. +|+.+|+++|+.+++|.+|... +.....++++++++.|+...
T Consensus 197 ~~~~~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~~~ 253 (257)
T TIGR01458 197 EEAVMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAVDL 253 (257)
T ss_pred hhEEEECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHHHHH
Confidence 9999999996 9999999999999999887531 12345689999999988654
No 67
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.78 E-value=6.9e-17 Score=119.53 Aligned_cols=160 Identities=13% Similarity=0.129 Sum_probs=101.6
Q ss_pred cEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHH---HHHhCCCCCCCHHHHHHHHHHHHH
Q 026543 11 THVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAIEAAQVF---VEETGISDKLSAEDFLVQREETLQ 87 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 87 (237)
++++|||||||++. .|..+..+.|... .............+.+.- .+..| .+.+.+.+.
T Consensus 2 ~la~FDlD~TLi~~------~w~~~~~~~g~~~--~~~~~~~~~~~~~~~~~r~~ll~~~g----~~~~~i~~~------ 63 (203)
T TIGR02137 2 EIACLDLEGVLVPE------IWIAFAEKTGIDA--LKATTRDIPDYDVLMKQRLRILDEHG----LKLGDIQEV------ 63 (203)
T ss_pred eEEEEeCCcccHHH------HHHHHHHHcCCcH--HHHHhcCCcCHHHHHHHHHHHHHHCC----CCHHHHHHH------
Confidence 67999999999964 4677777888521 111111111222222211 11123 334444222
Q ss_pred hhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcce--------eeeCCCCCccCCCCCHHHH
Q 026543 88 TLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHH--------VVRGDDPEVKQGKPSPDIF 159 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~--------~~~~~~~~~~~~kp~~~~~ 159 (237)
...++++||+.++++.++++ .+++|+|++.... ...+++.+|+..+|.. .+.+. .. ..++.+...
T Consensus 64 --~~~i~l~pga~ell~~lk~~-~~~~IVS~~~~~~-~~~il~~lgi~~~~an~l~~~~~g~~tG~--~~-~~~~~K~~~ 136 (203)
T TIGR02137 64 --IATLKPLEGAVEFVDWLRER-FQVVILSDTFYEF-SQPLMRQLGFPTLLCHKLEIDDSDRVVGY--QL-RQKDPKRQS 136 (203)
T ss_pred --HHhCCCCccHHHHHHHHHhC-CeEEEEeCChHHH-HHHHHHHcCCchhhceeeEEecCCeeECe--ee-cCcchHHHH
Confidence 23367999999999999998 4999999976654 4468888999877752 22222 11 234444444
Q ss_pred HHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcC
Q 026543 160 LAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~ 201 (237)
...+++.+ . ++++|||+.||+.+++.+|.+.++.+.
T Consensus 137 l~~l~~~~---~---~~v~vGDs~nDl~ml~~Ag~~ia~~ak 172 (203)
T TIGR02137 137 VIAFKSLY---Y---RVIAAGDSYNDTTMLSEAHAGILFHAP 172 (203)
T ss_pred HHHHHhhC---C---CEEEEeCCHHHHHHHHhCCCCEEecCC
Confidence 44445555 3 899999999999999999988776544
No 68
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.77 E-value=5.4e-18 Score=121.52 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=79.6
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhh-----------HHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLAR-----------HFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAA 163 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~-----------~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l 163 (237)
++||+.++|+.|+++|++++|+||.... .....+++.+|+. ++.+++++ .....||++..+..++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~~~ii~~~--~~~~~KP~p~~~~~~~ 118 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP--IQVLAATH--AGLYRKPMTGMWEYLQ 118 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC--EEEEEecC--CCCCCCCccHHHHHHH
Confidence 6899999999999999999999996542 1223467777774 35666666 5556899999999999
Q ss_pred HHcCCCCCCCCcEEEEecCH--------HHHHHHHHcCCeEEE
Q 026543 164 KRFEGGPIDSQEILVFEDAP--------SGVLAAKNAGMSVVM 198 (237)
Q Consensus 164 ~~~~~~~~~~~~~~~igD~~--------~Di~~a~~~G~~~i~ 198 (237)
++++.. +++++++||||+. +|+++|+++|+++++
T Consensus 119 ~~~~~~-~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 119 SQYNSP-IKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HHcCCC-CCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 999611 6899999999996 799999999998764
No 69
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.76 E-value=4e-17 Score=121.66 Aligned_cols=123 Identities=21% Similarity=0.228 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcce-ee-------eC
Q 026543 73 LSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHH-VV-------RG 144 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~-~~-------~~ 144 (237)
.+.+++....+.++.+... ..++|++.++++.++++|++++|+|++....+. .+++.+|+..+|.. +. .+
T Consensus 67 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~-~~~~~lg~~~~~~~~l~~~~~g~~~g 144 (202)
T TIGR01490 67 LLEEDVRAIVEEFVNQKIE-SILYPEARDLIRWHKAEGHTIVLVSASLTILVK-PLARILGIDNAIGTRLEESEDGIYTG 144 (202)
T ss_pred CCHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHH-HHHHHcCCcceEecceEEcCCCEEeC
Confidence 5677777777777665443 579999999999999999999999997665444 67788888777654 22 12
Q ss_pred C-CCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEc
Q 026543 145 D-DPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVP 200 (237)
Q Consensus 145 ~-~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~ 200 (237)
. ......++++...++.++++.+ +++++|+++|||.+|+++++.+|..++..+
T Consensus 145 ~~~~~~~~g~~K~~~l~~~~~~~~---~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~ 198 (202)
T TIGR01490 145 NIDGNNCKGEGKVHALAELLAEEQ---IDLKDSYAYGDSISDLPLLSLVGHPYVVNP 198 (202)
T ss_pred CccCCCCCChHHHHHHHHHHHHcC---CCHHHcEeeeCCcccHHHHHhCCCcEEeCC
Confidence 1 0011234667778999999999 999999999999999999999998766543
No 70
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.76 E-value=2.2e-17 Score=123.92 Aligned_cols=188 Identities=14% Similarity=0.178 Sum_probs=112.5
Q ss_pred EEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHH-HHh--cCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhh
Q 026543 13 VIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLK-AKM--MGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQTL 89 (237)
Q Consensus 13 vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (237)
|+|||||||++.+.. ..+++.++.+ .+..+ ..+ ...+..+.++..+..+... ..+++. ....
T Consensus 2 ~~fDFDgTit~~d~~-----~~~~~~~~~~-~~~~~~~~~~~g~~~~~e~~~~~~~~~~~~---~~~~~~----~~~~-- 66 (214)
T TIGR03333 2 IICDFDGTITNNDNI-----ISIMKQFAPP-EWEALKDGVLSKTLSIQEGVGRMFGLLPSS---LKEEIT----SFVL-- 66 (214)
T ss_pred EEeccCCCCCcchhH-----HHHHHHhCcH-HHHHHHHHHHcCCccHHHHHHHHHhhCCCc---hHHHHH----HHHH--
Confidence 799999999977742 2222233221 12211 111 2334566666666554322 111222 2111
Q ss_pred cCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhc---ceeeeCCCCCccCCCCCHHHH-------
Q 026543 90 FPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLM---HHVVRGDDPEVKQGKPSPDIF------- 159 (237)
Q Consensus 90 ~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f---~~~~~~~~~~~~~~kp~~~~~------- 159 (237)
...+++||+.++++.|+++|++++|+|++....+. .+++.++....+ +.++.++ .....+|.+..+
T Consensus 67 -~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~-~il~~~~~~~~i~~n~~~~~~~--~~~~~~p~~~~~~~~~~cg 142 (214)
T TIGR03333 67 -ETAEIREGFREFVAFINEHGIPFYVISGGMDFFVY-PLLEGIVEKDRIYCNEADFSNE--YIHIDWPHPCDGTCQNQCG 142 (214)
T ss_pred -hcCcccccHHHHHHHHHHCCCeEEEECCCcHHHHH-HHHHhhCCcccEEeceeEeeCC--eeEEeCCCCCccccccCCC
Confidence 23789999999999999999999999997665444 455554332332 2333334 444556655443
Q ss_pred ---HHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC-Ccc-cccchhhhhhhhcccCCC
Q 026543 160 ---LAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL-DSS-YHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 160 ---~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~-~~~-~~~~~~~~~~~~~el~~~ 225 (237)
..++++++ ..+++++||||+.+|+++|+.||+ .+..+.. ... ....+...+++|.|+...
T Consensus 143 ~~K~~~l~~~~---~~~~~~i~iGDg~~D~~~a~~Ad~---~~ar~~l~~~~~~~~~~~~~~~~f~di~~~ 207 (214)
T TIGR03333 143 CCKPSLIRKLS---EPNDYHIVIGDSVTDVEAAKQSDL---CFARDYLLNECEELGLNHAPFQDFYDVRKE 207 (214)
T ss_pred CCHHHHHHHHh---hcCCcEEEEeCCHHHHHHHHhCCe---eEehHHHHHHHHHcCCCccCcCCHHHHHHH
Confidence 57788888 888999999999999999999996 3333221 111 122245556677666443
No 71
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.75 E-value=5.5e-17 Score=121.82 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=81.1
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCCh---hhHHHHHHhhhhhh--hhhcceeeeCCCCCccCCCCCHHHHHHHHHHc
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSL---ARHFELKTQKHREL--FSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRF 166 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~---~~~~~~~~~~~~gl--~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~ 166 (237)
...+.+|++++|+.|+++|++++++||+. .......+++.+|+ ..+|+.+++++ .. .||.+.. .++++
T Consensus 112 ~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd--~~--~K~~K~~---~l~~~ 184 (237)
T PRK11009 112 FSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGD--KP--GQYTKTQ---WLKKK 184 (237)
T ss_pred cCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCC--CC--CCCCHHH---HHHhc
Confidence 47799999999999999999999999964 23345556666888 88899888887 42 5666543 56677
Q ss_pred CCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 167 EGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 167 ~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
+ + ++||||+.+|+.+|++||+.+|.|.++.+
T Consensus 185 ~---i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~ 215 (237)
T PRK11009 185 N---I----RIFYGDSDNDITAAREAGARGIRILRAAN 215 (237)
T ss_pred C---C----eEEEcCCHHHHHHHHHcCCcEEEEecCCC
Confidence 7 5 89999999999999999999999998776
No 72
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.75 E-value=3e-17 Score=129.89 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=83.8
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCCh--------------hhHHHHHHhhhhhhhhhcceee-e----CCCCCccCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSL--------------ARHFELKTQKHRELFSLMHHVV-R----GDDPEVKQGK 153 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~--------------~~~~~~~~~~~~gl~~~f~~~~-~----~~~~~~~~~k 153 (237)
..++||+.++|..|+++|++++|+||.+ .......+++..++ +|+.++ + ++ +....|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl--~fd~i~i~~~~~sd--~~~~rK 104 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGI--KFDEVLICPHFPED--NCSCRK 104 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCC--ceeeEEEeCCcCcc--cCCCCC
Confidence 6799999999999999999999999941 11122234555566 366554 3 24 556789
Q ss_pred CCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 154 PSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
|++..+..++++++ ++|++++||||+.+|+++|+++|+++|+|+..
T Consensus 105 P~p~~l~~a~~~l~---v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~~ 150 (354)
T PRK05446 105 PKTGLVEEYLAEGA---IDLANSYVIGDRETDVQLAENMGIKGIRYARE 150 (354)
T ss_pred CCHHHHHHHHHHcC---CCcccEEEEcCCHHHHHHHHHCCCeEEEEECC
Confidence 99999999999999 99999999999999999999999999999653
No 73
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.74 E-value=5.1e-17 Score=118.54 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=74.4
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCC-C--------C-CccCCCCCHHHHHH
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGD-D--------P-EVKQGKPSPDIFLA 161 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~-~--------~-~~~~~kp~~~~~~~ 161 (237)
.+++.||+.++++.++++|++++|+|++....+. .+++.+|+..++...+..+ + . ....+..|+..+..
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~-~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~ 149 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGFDFFVE-PVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKE 149 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHH-HHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHH
Confidence 4668999999999999999999999997665444 5677778877665433321 0 0 11223455778888
Q ss_pred HHHHcCCCCCCCCcEEEEecCHHHHHHHHHc
Q 026543 162 AAKRFEGGPIDSQEILVFEDAPSGVLAAKNA 192 (237)
Q Consensus 162 ~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~ 192 (237)
++++++ ++++++++|||+.+|+++++.+
T Consensus 150 ~~~~~~---~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 150 LLEESK---ITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHhC---CCHHHEEEEeCCHHHHHHHhcC
Confidence 899999 9999999999999999998764
No 74
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.74 E-value=3.7e-17 Score=117.98 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=80.1
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
..++|++.++|+.|+++|++++++||+........+.+.+++. ... ...||++..+..++++++ ++
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~------~~~-----~~~KP~p~~~~~~l~~~~---~~ 107 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP------VLP-----HAVKPPGCAFRRAHPEMG---LT 107 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE------EEc-----CCCCCChHHHHHHHHHcC---CC
Confidence 3578899999999999999999999976333333344444432 111 236999999999999999 99
Q ss_pred CCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCC
Q 026543 173 SQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLD 205 (237)
Q Consensus 173 ~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~ 205 (237)
+++++||||+. .|+.+|+++|+.+++|.++...
T Consensus 108 ~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~ 141 (170)
T TIGR01668 108 SEQVAVVGDRLFTDVMGGNRNGSYTILVEPLVHP 141 (170)
T ss_pred HHHEEEECCcchHHHHHHHHcCCeEEEEccCcCC
Confidence 99999999998 7999999999999999987763
No 75
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.73 E-value=8.8e-18 Score=128.64 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=85.9
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHH--HHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFEL--KTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~--~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.++.+...+..|+ +|.+ .++||.+...... .......+...+....+.+ ....+||++..|..++++++ ++
T Consensus 122 ~y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~--~~~~gKP~~~~~~~~~~~~~---~~ 194 (249)
T TIGR01457 122 DYEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLEVATGVK--PVYIGKPNAIIMEKAVEHLG---TE 194 (249)
T ss_pred CHHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCC--ccccCCChHHHHHHHHHHcC---CC
Confidence 3445555566664 4565 7778865543211 1112333444555555666 56678999999999999999 99
Q ss_pred CCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCCcc--cc--cchhhhhhhhccc
Q 026543 173 SQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLDSS--YH--SNADQLLSSLLGF 222 (237)
Q Consensus 173 ~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~--~~--~~~~~~~~~~~el 222 (237)
+++++||||+. +|+.+|+++|+++++|.+|..... .. ..++++++++.|+
T Consensus 195 ~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 195 REETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred cccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhhC
Confidence 99999999997 899999999999999998876322 11 4678888888764
No 76
>PRK10444 UMP phosphatase; Provisional
Probab=99.72 E-value=8.2e-17 Score=122.78 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=62.8
Q ss_pred CccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCCcc-c---ccchhhhhhhhccc
Q 026543 148 EVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLDSS-Y---HSNADQLLSSLLGF 222 (237)
Q Consensus 148 ~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~-~---~~~~~~~~~~~~el 222 (237)
....+||++..+..++++++ +++++|+||||+. +|+.+|+++|+.+++|.+|..... . ...++++++++.|+
T Consensus 169 ~~~~gKP~~~~~~~~~~~~~---~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 169 PFYVGKPSPWIIRAALNKMQ---AHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred ccccCCCCHHHHHHHHHHcC---CCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 44468999999999999999 9999999999997 899999999999999998877422 1 35789999999887
No 77
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.72 E-value=2.9e-17 Score=123.52 Aligned_cols=90 Identities=28% Similarity=0.457 Sum_probs=75.2
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.+++|++.++++.|++.|++++++|+... .....+.+.+|+ ++.++.+. .. +||.+..+..++++++ ++
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~-~~a~~~~~~lgi---~~~~v~a~--~~--~kP~~k~~~~~i~~l~---~~ 194 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNE-STASAIAKQLGI---FDSIVFAR--VI--GKPEPKIFLRIIKELQ---VK 194 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEH-HHHHHHHHHTTS---CSEEEEES--HE--TTTHHHHHHHHHHHHT---CT
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccc-cccccccccccc---cccccccc--cc--ccccchhHHHHHHHHh---cC
Confidence 57899999999999999999999998444 445567777777 44444444 22 6899999999999999 99
Q ss_pred CCcEEEEecCHHHHHHHHHcC
Q 026543 173 SQEILVFEDAPSGVLAAKNAG 193 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G 193 (237)
+++|+||||+.||+.|+++||
T Consensus 195 ~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 195 PGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp GGGEEEEESSGGHHHHHHHSS
T ss_pred CCEEEEEccCHHHHHHHHhCc
Confidence 999999999999999999987
No 78
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.70 E-value=1.2e-16 Score=109.81 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=75.9
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhh-------hhhhcceeeeCCCCCccCCCCCHHHHHHHHHHc
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRE-------LFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRF 166 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~g-------l~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~ 166 (237)
.+++|+.++|+.|+++|++++++||++........++..+ +..+|+.+++++ . +|+|..+..+++++
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~--~----~pkp~~~~~a~~~l 102 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGY--W----LPKSPRLVEIALKL 102 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcC--C----CcHHHHHHHHHHHh
Confidence 5899999999999999999999999734445545677777 788999988876 2 58899999999999
Q ss_pred CCCCCCCCcEEEEecCHHHHHHHHH
Q 026543 167 EGGPIDSQEILVFEDAPSGVLAAKN 191 (237)
Q Consensus 167 ~~~~~~~~~~~~igD~~~Di~~a~~ 191 (237)
| ..++|++|+||||+..|++..+.
T Consensus 103 g-~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 103 N-GVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred c-CCCCcceEEEECCCHhHHHHHHh
Confidence 8 22689999999999999877654
No 79
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.70 E-value=3.8e-15 Score=103.67 Aligned_cols=122 Identities=18% Similarity=0.216 Sum_probs=94.2
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHH--hhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKT--QKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGG 169 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~--~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~ 169 (237)
..+++|++.+.+++.++.|.+++|.|.++......-+ .....|..+|++.+-.. .-.|-....|.+++...|
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDtt----iG~KrE~~SY~kIa~~iG-- 174 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTT----IGKKRESQSYAKIAGDIG-- 174 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeecc----ccccccchhHHHHHHhcC--
Confidence 4689999999999999999999999998876544211 12334556666665322 224667788999999999
Q ss_pred CCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhc
Q 026543 170 PIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLL 220 (237)
Q Consensus 170 ~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~ 220 (237)
++|.+++|+.|.++.+.+|+.+|+.++.+.++.+.+........+++||+
T Consensus 175 -l~p~eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~d~~~~~~~~sf~ 224 (229)
T COG4229 175 -LPPAEILFLSDNPEELKAAAGVGLATGLAVRPGNAPVPDGQGFLVYKSFE 224 (229)
T ss_pred -CCchheEEecCCHHHHHHHHhcchheeeeecCCCCCCCCCcCceeeechh
Confidence 99999999999999999999999999999887665444444555666665
No 80
>PLN02645 phosphoglycolate phosphatase
Probab=99.70 E-value=1.4e-17 Score=131.61 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=87.2
Q ss_pred HHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCC-CCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEe
Q 026543 102 LIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDD-PEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFE 180 (237)
Q Consensus 102 ~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~-~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~ig 180 (237)
....|+.++-..+|+||.+........+...|...+|+.+.+... .....+||+|..|..++++++ +++++++|||
T Consensus 178 a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~---~~~~~~~~VG 254 (311)
T PLN02645 178 ATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFG---IEKSQICMVG 254 (311)
T ss_pred HHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcC---CCcccEEEEc
Confidence 344554433458888886553211122344566677777766541 012246999999999999999 9999999999
Q ss_pred cCH-HHHHHHHHcCCeEEEEcCCCCCccc------ccchhhhhhhhcccCCC
Q 026543 181 DAP-SGVLAAKNAGMSVVMVPDPRLDSSY------HSNADQLLSSLLGFNPK 225 (237)
Q Consensus 181 D~~-~Di~~a~~~G~~~i~v~~~~~~~~~------~~~~~~~~~~~~el~~~ 225 (237)
|+. +|+.+|+++|+++++|.+|...... ...++++++++.++...
T Consensus 255 D~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~ 306 (311)
T PLN02645 255 DRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTL 306 (311)
T ss_pred CCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHH
Confidence 997 9999999999999999888763221 24689999999988554
No 81
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.69 E-value=3.8e-16 Score=107.52 Aligned_cols=95 Identities=20% Similarity=0.326 Sum_probs=76.9
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQ 174 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~ 174 (237)
..|.+++-+..++.+|+++.|+||+....+. .+.+.+|+ +.+.. ..||.+..+.+++++++ ++++
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~-~~~~~l~v----~fi~~-------A~KP~~~~fr~Al~~m~---l~~~ 111 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVA-RAAEKLGV----PFIYR-------AKKPFGRAFRRALKEMN---LPPE 111 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHH-hhhhhcCC----ceeec-------ccCccHHHHHHHHHHcC---CChh
Confidence 4555666777889999999999996665544 45565554 34432 46999999999999999 9999
Q ss_pred cEEEEecCH-HHHHHHHHcCCeEEEEcCCCC
Q 026543 175 EILVFEDAP-SGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 175 ~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~ 204 (237)
+|+||||.. +|+.++..+|+.+|.|.+=..
T Consensus 112 ~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~ 142 (175)
T COG2179 112 EVVMVGDQLFTDVLGGNRAGMRTILVEPLVA 142 (175)
T ss_pred HEEEEcchhhhhhhcccccCcEEEEEEEecc
Confidence 999999999 999999999999999975333
No 82
>PRK11590 hypothetical protein; Provisional
Probab=99.66 E-value=6.9e-15 Score=110.12 Aligned_cols=180 Identities=9% Similarity=-0.005 Sum_probs=104.9
Q ss_pred CccEEEEecCcccccchhhHHHHHHHHH-HHcCCCCCH-HHHHHhcCCChHHHHHH-------HHHHhCCCCCCCHHHHH
Q 026543 9 PITHVIFDMDGLLLDTEKFYTEVQELIL-ARYNKTFDW-SLKAKMMGKKAIEAAQV-------FVEETGISDKLSAEDFL 79 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 79 (237)
+.|+++|||||||++.. ....+..++ +++|..... .......|.+.....+. +....... .+.+++.
T Consensus 5 ~~k~~iFD~DGTL~~~d--~~~~~~~~~~~~~g~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g--~~~~~~~ 80 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD--MFGSFLRYLLRRQPLNLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFG--HSEARLQ 80 (211)
T ss_pred cceEEEEecCCCCcccc--hHHHHHHHHHHhcchhhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcC--CCHHHHH
Confidence 35799999999999333 455555555 778764332 44444555444332211 11111111 3345555
Q ss_pred HHHHHHHHhhcCCCCCCccHHHHH-HHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCC----C--CccCC
Q 026543 80 VQREETLQTLFPTSELMPGASHLI-RHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDD----P--EVKQG 152 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~----~--~~~~~ 152 (237)
...+.+.+.+.....++||+.++| +.++++|++++|+||+.... ...+++.+|+.. .+.+++.+. + ..+..
T Consensus 81 ~~~~~f~~~~~~~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~-~~~il~~l~~~~-~~~~i~t~l~~~~tg~~~g~~ 158 (211)
T PRK11590 81 ALEADFVRWFRDNVTAFPVVQERLTTYLLSSDADVWLITGSPQPL-VEQVYFDTPWLP-RVNLIASQMQRRYGGWVLTLR 158 (211)
T ss_pred HHHHHHHHHHHHhCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHH-HHHHHHHccccc-cCceEEEEEEEEEccEECCcc
Confidence 544444333322356799999999 56888899999999966544 445666666422 223333220 0 11110
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEE
Q 026543 153 KPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVV 197 (237)
Q Consensus 153 kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i 197 (237)
---.+-...+.+.++ .+...+.+.|||.+|+++...+|-+.+
T Consensus 159 c~g~~K~~~l~~~~~---~~~~~~~aY~Ds~~D~pmL~~a~~~~~ 200 (211)
T PRK11590 159 CLGHEKVAQLERKIG---TPLRLYSGYSDSKQDNPLLYFCQHRWR 200 (211)
T ss_pred CCChHHHHHHHHHhC---CCcceEEEecCCcccHHHHHhCCCCEE
Confidence 001122333444557 677889999999999999999997644
No 83
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.66 E-value=5.9e-17 Score=115.06 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=76.5
Q ss_pred HHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEec
Q 026543 102 LIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFED 181 (237)
Q Consensus 102 ~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD 181 (237)
.++.|+++|++++|+||....... ..++.+|+..+|+ + .+|++..+..++++++ +++++|+||||
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~-~~l~~~gi~~~~~----~-------~~~k~~~~~~~~~~~~---~~~~~~~~vGD 100 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVE-DRCKTLGITHLYQ----G-------QSNKLIAFSDILEKLA---LAPENVAYIGD 100 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHH-HHHHHcCCCEEEe----c-------ccchHHHHHHHHHHcC---CCHHHEEEECC
Confidence 789999999999999997766544 5677777766553 1 2678999999999999 99999999999
Q ss_pred CHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhh
Q 026543 182 APSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSS 218 (237)
Q Consensus 182 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~ 218 (237)
+.+|+++++.+|+. +.+.... +.....+++++.+
T Consensus 101 s~~D~~~~~~ag~~-~~v~~~~--~~~~~~a~~i~~~ 134 (154)
T TIGR01670 101 DLIDWPVMEKVGLS-VAVADAH--PLLIPRADYVTRI 134 (154)
T ss_pred CHHHHHHHHHCCCe-EecCCcC--HHHHHhCCEEecC
Confidence 99999999999987 5554432 2234445554443
No 84
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.64 E-value=9e-16 Score=119.60 Aligned_cols=118 Identities=13% Similarity=0.089 Sum_probs=74.3
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChh----hHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLA----RHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~----~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
++++.+++..++..+..+.++++... ......+.+..++.........-+ ....+..++.+++++++++| +
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~e--i~~~~~~K~~~l~~l~~~~g---i 213 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVD--IARKGNSKGKRLTQWVEAQG---W 213 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEE--EecCCCChHHHHHHHHHHcC---C
Confidence 45666777777666666666665322 112223333333221100000012 22234457889999999999 9
Q ss_pred CCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcc
Q 026543 172 DSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLG 221 (237)
Q Consensus 172 ~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~e 221 (237)
+++++++|||+.||++|++.+|+ +|++++..+..+..|++++++-.+
T Consensus 214 ~~~e~i~~GD~~NDi~m~~~ag~---~vamgna~~~lk~~Ad~v~~~n~~ 260 (272)
T PRK10530 214 SMKNVVAFGDNFNDISMLEAAGL---GVAMGNADDAVKARADLVIGDNTT 260 (272)
T ss_pred CHHHeEEeCCChhhHHHHHhcCc---eEEecCchHHHHHhCCEEEecCCC
Confidence 99999999999999999999995 566666655556778887765443
No 85
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.63 E-value=2.9e-16 Score=114.72 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=74.3
Q ss_pred HHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEec
Q 026543 102 LIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFED 181 (237)
Q Consensus 102 ~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD 181 (237)
.++.|+++|++++|+||.....+. .+++.+|+..+|+ +. ++++..+..+++++| +++++++||||
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~-~~l~~lgl~~~f~----g~-------~~k~~~l~~~~~~~g---l~~~ev~~VGD 120 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVE-DRMTTLGITHLYQ----GQ-------SNKLIAFSDLLEKLA---IAPEQVAYIGD 120 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHH-HHHHHcCCceeec----CC-------CcHHHHHHHHHHHhC---CCHHHEEEECC
Confidence 556677899999999997665544 5677777765554 22 456899999999999 99999999999
Q ss_pred CHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhh
Q 026543 182 APSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLS 217 (237)
Q Consensus 182 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~ 217 (237)
+.+|+++++++|+.++ +. ...+.....++++++
T Consensus 121 s~~D~~~a~~aG~~~~-v~--~~~~~~~~~a~~v~~ 153 (183)
T PRK09484 121 DLIDWPVMEKVGLSVA-VA--DAHPLLLPRADYVTR 153 (183)
T ss_pred CHHHHHHHHHCCCeEe-cC--ChhHHHHHhCCEEec
Confidence 9999999999999844 43 233333455666664
No 86
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.7e-15 Score=114.11 Aligned_cols=76 Identities=26% Similarity=0.367 Sum_probs=66.4
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCCcc----cccchhhhhhhhcccCC
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLDSS----YHSNADQLLSSLLGFNP 224 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~----~~~~~~~~~~~~~el~~ 224 (237)
-.+||++.+|+.++++++ .++++++||||+. +||.+|.++|+.+++|.+|..... ....++++++|+.++..
T Consensus 187 ~~GKP~~~i~~~al~~~~---~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~~~ 263 (269)
T COG0647 187 VIGKPSPAIYEAALEKLG---LDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAELIT 263 (269)
T ss_pred ccCCCCHHHHHHHHHHhC---CCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHHHh
Confidence 578999999999999999 9999999999999 999999999999999999988322 24678999999999876
Q ss_pred CCCC
Q 026543 225 KDWG 228 (237)
Q Consensus 225 ~l~~ 228 (237)
.+..
T Consensus 264 ~~~~ 267 (269)
T COG0647 264 ALKE 267 (269)
T ss_pred hhhc
Confidence 5543
No 87
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.60 E-value=7.9e-14 Score=104.26 Aligned_cols=174 Identities=13% Similarity=0.136 Sum_probs=115.3
Q ss_pred EEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHH-HHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhc
Q 026543 12 HVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLK-AKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQTLF 90 (237)
Q Consensus 12 ~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (237)
+|+||||+||++.+.. ..+++.++.......+ ..+......+.++.++..++..+ .+.+++.+. .
T Consensus 2 LvvfDFD~TIvd~dsd-----~~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~g-vt~~~I~~~--------l 67 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSD-----DWVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQG-VTPEDIRDA--------L 67 (234)
T ss_pred EEEEeCCCCccCCccH-----HHHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcC-CCHHHHHHH--------H
Confidence 6899999999977642 2344555544332232 22222344566666666653221 334444333 3
Q ss_pred CCCCCCccHHHHHHHH--HhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCC-----C-----------C--Ccc
Q 026543 91 PTSELMPGASHLIRHL--HAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGD-----D-----------P--EVK 150 (237)
Q Consensus 91 ~~~~~~~~~~~~l~~l--~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~-----~-----------~--~~~ 150 (237)
..+++.||+.++++.+ ++.|+.++|+|+++.-.+. .++++.|+...|+.|++.. + . ..+
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~-~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~ 146 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIE-TILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCP 146 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHH-HHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCC
Confidence 4589999999999999 4578999999997665444 6889999999998887642 0 0 001
Q ss_pred CCCCCHHHHHHHHHHc---CCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCC
Q 026543 151 QGKPSPDIFLAAAKRF---EGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~---~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~ 203 (237)
...-|...++.+++.. | +..++++||||+.||+-.+...+-.-+..++..
T Consensus 147 ~NmCK~~il~~~~~~~~~~g---~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~ 199 (234)
T PF06888_consen 147 PNMCKGKILERLLQEQAQRG---VPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKG 199 (234)
T ss_pred CccchHHHHHHHHHHHhhcC---CCcceEEEECCCCCCcCcccccCCCCEEecCCC
Confidence 1123566777777663 5 788999999999999999998876544444433
No 88
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.59 E-value=4.7e-15 Score=113.40 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=78.8
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhccee--eeCCCCCccCCCCCHHHHHHHHHHcCCCCCC-
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHV--VRGDDPEVKQGKPSPDIFLAAAKRFEGGPID- 172 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~--~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~- 172 (237)
++++.++++.+.++|+++ |+||.+..... ......+...++..+ .+++ ....+||++..|..++++++ ..
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~-~~~~~~~~g~~~~~i~~~g~~--~~~~gKP~~~~~~~~~~~~~---~~~ 212 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQ-HGIYRYGAGYYAELIKQLGGK--VIYSGKPYPAIFHKALKECS---NIP 212 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccC-CCceEecccHHHHHHHHhCCc--EecCCCCCHHHHHHHHHHcC---CCC
Confidence 688999999998889987 88996665443 234455555566644 4555 55589999999999999998 75
Q ss_pred CCcEEEEecC-HHHHHHHHHcCCeEEEEcC
Q 026543 173 SQEILVFEDA-PSGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 173 ~~~~~~igD~-~~Di~~a~~~G~~~i~v~~ 201 (237)
+++|+||||+ .+|+.+|+++|+.+++|.+
T Consensus 213 ~~~~~~vGD~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 213 KNRMLMVGDSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred cccEEEECCCcHHHHHHHHHCCCeEEEEeC
Confidence 5789999999 5999999999999999853
No 89
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.58 E-value=4.1e-15 Score=92.43 Aligned_cols=69 Identities=26% Similarity=0.404 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCCcEEEEecC-HHHHHHHHHcCCeEEEEcCCCCCccc----ccchhhhhhhhccc
Q 026543 151 QGKPSPDIFLAAAKRFEGGPIDSQEILVFEDA-PSGVLAAKNAGMSVVMVPDPRLDSSY----HSNADQLLSSLLGF 222 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~-~~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~~~el 222 (237)
++||+|.++..++++++ ++++++++|||+ ..|+++|+++|+.+++|.+|...... ...+++++++|.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~---~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLG---VDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHT---SGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcC---CCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 57999999999999999 999999999999 79999999999999999998874432 36899999999874
No 90
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.57 E-value=2.3e-14 Score=113.16 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=91.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhh-hcceeeeCCCC-----CccCCCCCHHHHHHHHHHc
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFS-LMHHVVRGDDP-----EVKQGKPSPDIFLAAAKRF 166 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~-~f~~~~~~~~~-----~~~~~kp~~~~~~~~l~~~ 166 (237)
..++|++.++++.|+++|++++++||..... ....++.+++.. +|+.+++.+.. +....||+|..+..+++++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~-~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~ 264 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVC-EEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK 264 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhh-HHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence 4688999999999999999999999966654 446788888886 89988877610 1335799999999999999
Q ss_pred CCCCC-CCCcEEEEecCHHHHHHHHHcCCeEEEEcCCC
Q 026543 167 EGGPI-DSQEILVFEDAPSGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 167 ~~~~~-~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~ 203 (237)
+ . ++++|++|||+.+|+++|+++|+.+++|.+|.
T Consensus 265 ~---~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g~ 299 (300)
T PHA02530 265 I---APKYDVLLAVDDRDQVVDMWRRIGLECWQVAPGD 299 (300)
T ss_pred h---ccCceEEEEEcCcHHHHHHHHHhCCeEEEecCCC
Confidence 8 8 67999999999999999999999999998764
No 91
>PRK08238 hypothetical protein; Validated
Probab=99.55 E-value=1.6e-13 Score=113.47 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=75.6
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.+..|++.++++.++++|++++++|++...... .+.+++|+ ||.+++++ +....||++.. ..+.+.++
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~-~i~~~lGl---Fd~Vigsd--~~~~~kg~~K~-~~l~~~l~----- 138 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQ-AVAAHLGL---FDGVFASD--GTTNLKGAAKA-AALVEAFG----- 138 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHHcCC---CCEEEeCC--CccccCCchHH-HHHHHHhC-----
Confidence 568899999999999999999999997665444 56777776 89999998 55555555432 33445555
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCC
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~ 203 (237)
.++++++||+.+|+++++.+| ..+.|+.+.
T Consensus 139 ~~~~~yvGDS~~Dlp~~~~A~-~av~Vn~~~ 168 (479)
T PRK08238 139 ERGFDYAGNSAADLPVWAAAR-RAIVVGASP 168 (479)
T ss_pred ccCeeEecCCHHHHHHHHhCC-CeEEECCCH
Confidence 356899999999999999999 556676544
No 92
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.54 E-value=2.4e-14 Score=113.64 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=60.0
Q ss_pred cCCCCCHHHHHHHHHHc--------CCC--CCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCCcc---cccchhhh
Q 026543 150 KQGKPSPDIFLAAAKRF--------EGG--PIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLDSS---YHSNADQL 215 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~--------~~~--~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~---~~~~~~~~ 215 (237)
..+||++..|+.+++.+ +.. ..++++++||||++ +||.+|+++||.+++|.+|..... ....++++
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~v 309 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLI 309 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEE
Confidence 45999999999988887 300 02457999999998 999999999999999998754221 13458899
Q ss_pred hhhhcccCCCC
Q 026543 216 LSSLLGFNPKD 226 (237)
Q Consensus 216 ~~~~~el~~~l 226 (237)
++|+.|+...+
T Consensus 310 v~~l~e~~~~i 320 (321)
T TIGR01456 310 VNDVFDAVTKI 320 (321)
T ss_pred ECCHHHHHHHh
Confidence 99999886544
No 93
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.54 E-value=6.2e-14 Score=106.66 Aligned_cols=50 Identities=32% Similarity=0.495 Sum_probs=46.2
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcE-EEEecCH-HHHHHHHHcCCeEEEEcCC
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEI-LVFEDAP-SGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~-~~igD~~-~Di~~a~~~G~~~i~v~~~ 202 (237)
..+||++..|+.++++++ ++++++ +||||+. +|+.+|+++|+++++|.+|
T Consensus 185 ~~~KP~~~~~~~~~~~~~---~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 185 VVGKPSPAIYRAALNLLQ---ARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred eecCCCHHHHHHHHHHhC---CCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 367999999999999999 998887 9999998 8999999999999999764
No 94
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.53 E-value=4.1e-13 Score=95.82 Aligned_cols=128 Identities=23% Similarity=0.273 Sum_probs=91.1
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChh---hH--------HHHHHhhhh-hhhhhcceeeeCC-CC--CccCCCCCHH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLA---RH--------FELKTQKHR-ELFSLMHHVVRGD-DP--EVKQGKPSPD 157 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~---~~--------~~~~~~~~~-gl~~~f~~~~~~~-~~--~~~~~kp~~~ 157 (237)
..+.+|+.+.+..+++.|++++++||-+. .+ .+..+++.+ .....|+.++... .+ ...+.||++.
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~g 109 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPG 109 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChH
Confidence 45889999999999999999999999211 01 111111111 1112466665543 11 2568999999
Q ss_pred HHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCC-cccccchhhhhhhhcccC
Q 026543 158 IFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLD-SSYHSNADQLLSSLLGFN 223 (237)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~-~~~~~~~~~~~~~~~el~ 223 (237)
++..++++++ +++.+.++|||+.+|+++|.++|++.+.+.++... .......+++.+++.++.
T Consensus 110 m~~~~~~~~~---iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (181)
T COG0241 110 MLLSALKEYN---IDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEFA 173 (181)
T ss_pred HHHHHHHHhC---CCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHHH
Confidence 9999999999 99999999999999999999999998888776552 122224566666666654
No 95
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.52 E-value=6.7e-14 Score=111.16 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=78.5
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhh----hhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKH----RELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~----~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
+++++.++|..|+++|+.++|+|++...... ..++. +++.++|+.+..+ .||++..+..+++++|
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~-~~l~~~~~~~~~~~~f~~~~~~-------~~pk~~~i~~~~~~l~--- 100 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAK-KVFERRKDFILQAEDFDARSIN-------WGPKSESLRKIAKKLN--- 100 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHH-HHHHhCccccCcHHHeeEEEEe-------cCchHHHHHHHHHHhC---
Confidence 5889999999999999999999997765544 45666 7888889887544 3799999999999999
Q ss_pred CCCCcEEEEecCHHHHHHHHHcCCe
Q 026543 171 IDSQEILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~G~~ 195 (237)
+.+++++||||++.|+.+++.++..
T Consensus 101 i~~~~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 101 LGTDSFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred CCcCcEEEECCCHHHHHHHHHHCCC
Confidence 9999999999999999999998754
No 96
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.50 E-value=2.9e-14 Score=100.61 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=81.1
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhh-hcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFS-LMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~-~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
.+.++||+.++|..|++ +++++|+|++....+. .+++.+++.. +|+.+++++ +....||. |.+.+++++
T Consensus 43 ~v~l~pG~~e~L~~L~~-~~~l~I~Ts~~~~~~~-~il~~l~~~~~~f~~i~~~~--d~~~~KP~---~~k~l~~l~--- 112 (148)
T smart00577 43 YVKKRPGVDEFLKRASE-LFELVVFTAGLRMYAD-PVLDLLDPKKYFGYRRLFRD--ECVFVKGK---YVKDLSLLG--- 112 (148)
T ss_pred EEEECCCHHHHHHHHHh-ccEEEEEeCCcHHHHH-HHHHHhCcCCCEeeeEEECc--cccccCCe---EeecHHHcC---
Confidence 36789999999999984 6999999998877666 4677778755 469999998 77778886 899999999
Q ss_pred CCCCcEEEEecCHHHHHHHHHcCCe
Q 026543 171 IDSQEILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~G~~ 195 (237)
.+|++|++|||+.+|++++.++|+.
T Consensus 113 ~~p~~~i~i~Ds~~~~~aa~~ngI~ 137 (148)
T smart00577 113 RDLSNVIIIDDSPDSWPFHPENLIP 137 (148)
T ss_pred CChhcEEEEECCHHHhhcCccCEEE
Confidence 9999999999999999999999944
No 97
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.50 E-value=7.2e-13 Score=101.25 Aligned_cols=97 Identities=19% Similarity=0.326 Sum_probs=73.8
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhccee------eeCCCCCccCCCCCH---------
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHV------VRGDDPEVKQGKPSP--------- 156 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~------~~~~~~~~~~~kp~~--------- 156 (237)
.+.+.||+.++++.|+++|++++|+|++....+. ..++..|+...+..+ +..+ ....++|.|
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie-~vL~~lgl~~~~~~IvSN~L~f~~d--GvltG~~~P~i~~~~K~~ 195 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLE-EVLRQAGVYHPNVKVVSNFMDFDED--GVLKGFKGPLIHTFNKNH 195 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHH-HHHHHcCCCCcCceEEeeeEEECCC--CeEeCCCCCcccccccHH
Confidence 5889999999999999999999999998876555 567767776556566 3333 333455555
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHc
Q 026543 157 DIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNA 192 (237)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~ 192 (237)
..++...+.++. ..++++|++|||+.+|+.||.-+
T Consensus 196 ~v~~~~~~~~~~-~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 196 DVALRNTEYFNQ-LKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred HHHHHHHHHhCc-cCCcceEEEECcChhhhhHhcCC
Confidence 556567777752 15789999999999999998766
No 98
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.50 E-value=1.1e-14 Score=110.60 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=53.2
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhh
Q 026543 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSL 219 (237)
Q Consensus 149 ~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~ 219 (237)
...+..|+.++++++++++ ++++++++|||+.||++|++.+|+. |..++..+..+..+++++.+.
T Consensus 152 ~~~~~~Kg~al~~l~~~~~---i~~~~~i~~GD~~NDi~m~~~ag~~---vam~Na~~~vk~~a~~v~~~n 216 (230)
T PRK01158 152 KSPGVNKGTGLKKLAELMG---IDPEEVAAIGDSENDLEMFEVAGFG---VAVANADEELKEAADYVTEKS 216 (230)
T ss_pred eeCCCChHHHHHHHHHHhC---CCHHHEEEECCchhhHHHHHhcCce---EEecCccHHHHHhcceEecCC
Confidence 3456678999999999999 9999999999999999999999954 555667666667777776553
No 99
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.49 E-value=8.1e-14 Score=98.99 Aligned_cols=103 Identities=19% Similarity=0.327 Sum_probs=73.7
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh----------hhcceeeeCCCCCccCCCCCHHHHHH
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF----------SLMHHVVRGDDPEVKQGKPSPDIFLA 161 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~----------~~f~~~~~~~~~~~~~~kp~~~~~~~ 161 (237)
.+.++|++.++|+.|+.+|++++++|-.+.......+++.+++. ++|+..--+. + .+...++.
T Consensus 43 ~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~------g-sK~~Hf~~ 115 (169)
T PF12689_consen 43 EVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYP------G-SKTTHFRR 115 (169)
T ss_dssp EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESS------S--HHHHHHH
T ss_pred EEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheec------C-chHHHHHH
Confidence 47899999999999999999999999766666777889988888 7776643222 2 56889999
Q ss_pred HHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 162 AAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 162 ~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
+.++.| +++++++||+|...+++.....|+.++.|..|..
T Consensus 116 i~~~tg---I~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt 155 (169)
T PF12689_consen 116 IHRKTG---IPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLT 155 (169)
T ss_dssp HHHHH------GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--
T ss_pred HHHhcC---CChhHEEEecCchhcceeeEecCcEEEEeCCCCC
Confidence 999999 9999999999999999999999999999998766
No 100
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.49 E-value=3.4e-13 Score=95.15 Aligned_cols=192 Identities=15% Similarity=0.171 Sum_probs=113.3
Q ss_pred CccEEEEecCcccccchhhHHHHHHHHHHHcCCCC--CHHHHHHhcCC-ChHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 026543 9 PITHVIFDMDGLLLDTEKFYTEVQELILARYNKTF--DWSLKAKMMGK-KAIEAAQVFVEETGISDKLSAEDFLVQREET 85 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (237)
.-++|+||+|-|++..+. +..+.+..|... ...+.+.+.|. +..+.++.-+.-+.. ...+.. .+
T Consensus 15 ~~~aVcFDvDSTvi~eEg-----IdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp----~~~qv~----~~ 81 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEG-----IDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQP----LQVQVE----QF 81 (227)
T ss_pred hcCeEEEecCcchhHHhh-----HHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcc----cHHHHH----HH
Confidence 358999999999997663 344444444421 11222222221 222222222221110 111111 11
Q ss_pred HHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhh--hc--------ceeeeCCCC--CccCCC
Q 026543 86 LQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFS--LM--------HHVVRGDDP--EVKQGK 153 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~--~f--------~~~~~~~~~--~~~~~k 153 (237)
. ....+++.||+++++..|+++|.+++++|++....+. .....+|+.. .+ ++-+.+.+. ....+-
T Consensus 82 v--~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~-~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsg 158 (227)
T KOG1615|consen 82 V--IKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIE-PVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSG 158 (227)
T ss_pred H--hcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHH-HHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCC
Confidence 1 1234789999999999999999999999998887555 4566677654 22 222222110 111222
Q ss_pred CCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC--CcccccchhhhhhhhcccCC
Q 026543 154 PSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL--DSSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~--~~~~~~~~~~~~~~~~el~~ 224 (237)
-+++.+..+.+ + .+.+.++||||+.+|+++...+. .++..+.. .+..+..+.+.+++|..|.-
T Consensus 159 gKa~~i~~lrk--~---~~~~~~~mvGDGatDlea~~pa~---afi~~~g~~~r~~vk~nak~~~~~f~~L~~ 223 (227)
T KOG1615|consen 159 GKAEVIALLRK--N---YNYKTIVMVGDGATDLEAMPPAD---AFIGFGGNVIREGVKANAKWYVTDFYVLGG 223 (227)
T ss_pred ccHHHHHHHHh--C---CChheeEEecCCccccccCCchh---hhhccCCceEcHhhHhccHHHHHHHHHHcc
Confidence 35667777766 7 78999999999999999988733 33333333 44457788899988887743
No 101
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.48 E-value=2.5e-12 Score=95.90 Aligned_cols=121 Identities=6% Similarity=-0.033 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCccHHHHHH-HHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCC----CC
Q 026543 73 LSAEDFLVQREETLQTLFPTSELMPGASHLIR-HLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGD----DP 147 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~----~~ 147 (237)
.+.+++.+..+.+.+.......++|++.++|+ .++++|++++|+||+.... ...+.+..++... +.+++.+ +.
T Consensus 73 ~~~~~l~~~~~~f~~~~~~~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~-~~~ia~~~~~~~~-~~~i~t~le~~~g 150 (210)
T TIGR01545 73 HREAHLQDLEADFVAAFRDKVTAFPLVAERLRQYLESSDADIWLITGSPQPL-VEAVYFDSNFIHR-LNLIASQIERGNG 150 (210)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHH-HHHHHHhcccccc-CcEEEEEeEEeCC
Confidence 44666666666655554444568999999996 7888999999999965544 4456655443222 2333332 00
Q ss_pred -C-ccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEE
Q 026543 148 -E-VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVM 198 (237)
Q Consensus 148 -~-~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~ 198 (237)
. .+..---.+-...+-+.++ .+.+.+.+.|||.+|+++...+|-+.+.
T Consensus 151 g~~~g~~c~g~~Kv~rl~~~~~---~~~~~~~aYsDS~~D~pmL~~a~~~~~V 200 (210)
T TIGR01545 151 GWVLPLRCLGHEKVAQLEQKIG---SPLKLYSGYSDSKQDNPLLAFCEHRWRV 200 (210)
T ss_pred ceEcCccCCChHHHHHHHHHhC---CChhheEEecCCcccHHHHHhCCCcEEE
Confidence 0 0000001122333444456 5677889999999999999999977543
No 102
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.48 E-value=6.9e-14 Score=100.10 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=76.2
Q ss_pred HHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEec
Q 026543 102 LIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFED 181 (237)
Q Consensus 102 ~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD 181 (237)
-+..|+++|++++|+||....... ..++.+|+..+|+. .||+|..+..++++++ ++++++++|||
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~-~~l~~lgi~~~f~~-----------~kpkp~~~~~~~~~l~---~~~~ev~~iGD 106 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVR-HRAEELKIKRFHEG-----------IKKKTEPYAQMLEEMN---ISDAEVCYVGD 106 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHH-HHHHHCCCcEEEec-----------CCCCHHHHHHHHHHcC---cCHHHEEEECC
Confidence 346678889999999996665544 57888888766652 1688999999999999 99999999999
Q ss_pred CHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhh
Q 026543 182 APSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLS 217 (237)
Q Consensus 182 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~ 217 (237)
+.||+++++.+|+.. ...+..+..+..+++++.
T Consensus 107 ~~nDi~~~~~ag~~~---am~nA~~~lk~~A~~I~~ 139 (169)
T TIGR02726 107 DLVDLSMMKRVGLAV---AVGDAVADVKEAAAYVTT 139 (169)
T ss_pred CHHHHHHHHHCCCeE---ECcCchHHHHHhCCEEcC
Confidence 999999999999654 444554444555555543
No 103
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.48 E-value=1.4e-11 Score=97.19 Aligned_cols=107 Identities=16% Similarity=0.093 Sum_probs=83.8
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhh-h-------hhhhcceeeeCCC---------------CC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHR-E-------LFSLMHHVVRGDD---------------PE 148 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~-g-------l~~~f~~~~~~~~---------------~~ 148 (237)
.+...||+.++|+.|+++|++++|+||+....+. .+++.+ | +.++||.++++.. ..
T Consensus 182 yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~-~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTD-KGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred HhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCC
Confidence 3677999999999999999999999997776655 456664 6 8999999987651 00
Q ss_pred ccCCCCCH------------HHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHH-HcCCeEEEEcCC
Q 026543 149 VKQGKPSP------------DIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAK-NAGMSVVMVPDP 202 (237)
Q Consensus 149 ~~~~kp~~------------~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~-~~G~~~i~v~~~ 202 (237)
.+..++.. .....+.+.++ +++++++||||+. .|+..++ .+||.+++|...
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~---~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pE 325 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLK---WRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPE 325 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHC---CCCCcEEEECCcchHHHHhhHHhcCcEEEEEchh
Confidence 11111111 22567888899 9999999999999 9999998 899999999763
No 104
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.44 E-value=1.2e-12 Score=108.88 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=76.5
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhh-----------HHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLAR-----------HFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAA 163 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~-----------~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l 163 (237)
++||+.+.|+.|+++|++++|+||-..- .....+++.+|+. |+.+++.+ .....||++.++..++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdviia~~--~~~~RKP~pGm~~~a~ 273 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVFIAIG--AGFYRKPLTGMWDHLK 273 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEEEeCC--CCCCCCCCHHHHHHHH
Confidence 6899999999999999999999995441 1123456666663 88888777 6678899999999999
Q ss_pred HHcCC-CCCCCCcEEEEecCHHHHHHHHHcCC
Q 026543 164 KRFEG-GPIDSQEILVFEDAPSGVLAAKNAGM 194 (237)
Q Consensus 164 ~~~~~-~~~~~~~~~~igD~~~Di~~a~~~G~ 194 (237)
++++. ..+++++++||||+..|+++++.+|-
T Consensus 274 ~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 274 EEANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred HhcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 99830 01899999999999988888777764
No 105
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.43 E-value=1.8e-13 Score=106.14 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=52.9
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhh
Q 026543 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSS 218 (237)
Q Consensus 149 ~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~ 218 (237)
...+..|..+++.+++++| ++++++++|||+.||++|.+.+| .+|.+++..+..+..++++..+
T Consensus 184 ~~~g~~K~~al~~l~~~lg---i~~~~v~afGD~~ND~~Ml~~ag---~gvam~Na~~~~k~~A~~vt~~ 247 (264)
T COG0561 184 TPKGVSKGYALQRLAKLLG---IKLEEVIAFGDSTNDIEMLEVAG---LGVAMGNADEELKELADYVTTS 247 (264)
T ss_pred ecCCCchHHHHHHHHHHhC---CCHHHeEEeCCccccHHHHHhcC---eeeeccCCCHHHHhhCCcccCC
Confidence 3456677899999999999 99999999999999999999999 6677778866666667655444
No 106
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.2e-12 Score=98.95 Aligned_cols=76 Identities=24% Similarity=0.283 Sum_probs=65.8
Q ss_pred CccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCC--------cccccchhhhhhh
Q 026543 148 EVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLD--------SSYHSNADQLLSS 218 (237)
Q Consensus 148 ~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~--------~~~~~~~~~~~~~ 218 (237)
..-.+||++.++..++++++ ++|++++||||+. +||.-++++|+++++|-+|... ......||+.+++
T Consensus 219 P~v~GKP~~~m~~~l~~~~~---i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~ 295 (306)
T KOG2882|consen 219 PIVLGKPSTFMFEYLLEKFN---IDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADS 295 (306)
T ss_pred CeecCCCCHHHHHHHHHHcC---CCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhh
Confidence 45578999999999999999 9999999999999 9999999999999999998772 1234458999999
Q ss_pred hcccCCCC
Q 026543 219 LLGFNPKD 226 (237)
Q Consensus 219 ~~el~~~l 226 (237)
+.++.+.+
T Consensus 296 l~d~~~~~ 303 (306)
T KOG2882|consen 296 LGDLLPLL 303 (306)
T ss_pred HHHHhhhc
Confidence 99886543
No 107
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.41 E-value=6.8e-14 Score=105.98 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=54.4
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhc
Q 026543 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLL 220 (237)
Q Consensus 149 ~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~ 220 (237)
...+.+|..++.++++++| ++++++++|||+.||++|++.+|+ .|.+++..+..+..+++++.+..
T Consensus 144 ~~~~~~K~~~i~~l~~~~~---i~~~~~i~~GD~~NDi~m~~~ag~---~vam~Na~~~~k~~A~~vt~~~~ 209 (225)
T TIGR01482 144 LPQGVNKGVAVKKLKEKLG---IKPGETLVCGDSENDIDLFEVPGF---GVAVANAQPELKEWADYVTESPY 209 (225)
T ss_pred eeCCCCHHHHHHHHHHHhC---CCHHHEEEECCCHhhHHHHHhcCc---eEEcCChhHHHHHhcCeecCCCC
Confidence 3456678899999999999 999999999999999999999994 56667776666777887765543
No 108
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.38 E-value=1.6e-13 Score=106.94 Aligned_cols=60 Identities=8% Similarity=0.043 Sum_probs=50.1
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhh
Q 026543 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQ 214 (237)
Q Consensus 149 ~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~ 214 (237)
...+..|..+++++++++| ++++++++|||+.||++|.+.+| ..|+++++.+..+..|++
T Consensus 183 ~~~g~sKg~al~~l~~~~g---i~~~~v~afGD~~NDi~Ml~~ag---~~vAm~Na~~~vK~~A~~ 242 (272)
T PRK15126 183 LPVGCNKGAALAVLSQHLG---LSLADCMAFGDAMNDREMLGSVG---RGFIMGNAMPQLRAELPH 242 (272)
T ss_pred ecCCCChHHHHHHHHHHhC---CCHHHeEEecCCHHHHHHHHHcC---CceeccCChHHHHHhCCC
Confidence 3445567999999999999 99999999999999999999999 566667776666666654
No 109
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.38 E-value=1.6e-12 Score=97.71 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=52.7
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhh
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSL 219 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~ 219 (237)
..+..+..+++++++++| ++++++++|||+.||++|++.+|+ .|.+++..+..+..+++++.+-
T Consensus 143 ~~~~~K~~~i~~l~~~~~---i~~~~~i~iGDs~ND~~ml~~ag~---~vam~na~~~~k~~A~~v~~~~ 206 (215)
T TIGR01487 143 KKGVDKGVGVEKLKELLG---IKPEEVAAIGDSENDIDLFRVVGF---KVAVANADDQLKEIADYVTSNP 206 (215)
T ss_pred cCCCChHHHHHHHHHHhC---CCHHHEEEECCCHHHHHHHHhCCC---eEEcCCccHHHHHhCCEEcCCC
Confidence 345667889999999999 999999999999999999999994 4555677666677778777643
No 110
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.37 E-value=1.5e-13 Score=107.01 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=55.8
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhc
Q 026543 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLL 220 (237)
Q Consensus 149 ~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~ 220 (237)
...+..|..+++++++++| ++++++++|||+.||++|.+.+| ..|+++++.+..+..|++++.+..
T Consensus 191 ~~~gvsKg~al~~l~~~~g---i~~~~v~afGD~~NDi~Ml~~ag---~~vAm~NA~~~vK~~A~~vt~~n~ 256 (270)
T PRK10513 191 LDKRVNKGTGVKSLAEHLG---IKPEEVMAIGDQENDIAMIEYAG---VGVAMGNAIPSVKEVAQFVTKSNL 256 (270)
T ss_pred eCCCCChHHHHHHHHHHhC---CCHHHEEEECCchhhHHHHHhCC---ceEEecCccHHHHHhcCeeccCCC
Confidence 3455677999999999999 99999999999999999999999 566667887777888888876543
No 111
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.34 E-value=1.8e-12 Score=92.56 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=64.2
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCCCc----ccccchhhhhhhhcccCC
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRLDS----SYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~----~~~~~~~~~~~~~~el~~ 224 (237)
..+||++..|+.+++.+| ++|++++||||.. .|+-.|+.+||..|.|.+|...+ .....|+..+++|.|...
T Consensus 178 vvGKP~~~fFe~al~~~g---v~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~AVd 254 (262)
T KOG3040|consen 178 VVGKPSPFFFESALQALG---VDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADAVD 254 (262)
T ss_pred EecCCCHHHHHHHHHhcC---CChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHHHH
Confidence 468999999999999999 9999999999998 89999999999999999987732 245668889999988765
Q ss_pred CC
Q 026543 225 KD 226 (237)
Q Consensus 225 ~l 226 (237)
++
T Consensus 255 ~I 256 (262)
T KOG3040|consen 255 LI 256 (262)
T ss_pred HH
Confidence 54
No 112
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.33 E-value=7.1e-11 Score=85.27 Aligned_cols=176 Identities=11% Similarity=0.109 Sum_probs=109.8
Q ss_pred CccEEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHh-cCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 026543 9 PITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKM-MGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQ 87 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (237)
+-.+++||||-|+++.+.. ..+...++........... -..-..+.+.+++++++-. +...+++.+..
T Consensus 12 ~ril~~FDFD~TIid~dSD-----~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheq-gv~~~~ik~~~----- 80 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSD-----NWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQ-GVRIAEIKQVL----- 80 (256)
T ss_pred CcEEEEEecCceeecCCcc-----hHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHc-CCCHHHHHHHH-----
Confidence 4468999999999976532 2223334433332222222 2223556677777776622 24455544443
Q ss_pred hhcCCCCCCccHHHHHHHHHhCCC-CEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCC--------------CCCccC-
Q 026543 88 TLFPTSELMPGASHLIRHLHAKGI-PMCVATGSLARHFELKTQKHRELFSLMHHVVRGD--------------DPEVKQ- 151 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~l~~~g~-~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~--------------~~~~~~- 151 (237)
..++..||+.++++.+++.|. .+.|+|.++.- +...++++.|+.++|+.|++.. +....+
T Consensus 81 ---r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsf-FIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~ 156 (256)
T KOG3120|consen 81 ---RSIPIVPGMVRLIKSAAKLGCFELIIVSDANSF-FIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCN 156 (256)
T ss_pred ---hcCCCCccHHHHHHHHHhCCCceEEEEecCchh-HHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccC
Confidence 348999999999999999985 99999986554 4557899999999999887632 000000
Q ss_pred CCC----CHHHHHHHHH---HcCCCCCCCCcEEEEecCHHHHHHHHHc-CCeEEEEcCC
Q 026543 152 GKP----SPDIFLAAAK---RFEGGPIDSQEILVFEDAPSGVLAAKNA-GMSVVMVPDP 202 (237)
Q Consensus 152 ~kp----~~~~~~~~l~---~~~~~~~~~~~~~~igD~~~Di~~a~~~-G~~~i~v~~~ 202 (237)
.-| |...+..+.. +-| +..++.+||||+.||+...... +..+++...+
T Consensus 157 ~CPsNmCKg~Vl~~~~~s~~~~g---v~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkg 212 (256)
T KOG3120|consen 157 LCPSNMCKGLVLDELVASQLKDG---VRYERLIYVGDGANDFCPVLRLRACDVAMPRKG 212 (256)
T ss_pred cCchhhhhhHHHHHHHHHHhhcC---CceeeEEEEcCCCCCcCcchhcccCceecccCC
Confidence 111 2233333322 234 7888999999999999776665 4444444433
No 113
>PRK10976 putative hydrolase; Provisional
Probab=99.32 E-value=4.3e-13 Score=104.15 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=52.0
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchh--hhhhh
Q 026543 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNAD--QLLSS 218 (237)
Q Consensus 149 ~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~--~~~~~ 218 (237)
...+..|..+++++++++| ++++++++|||+.||++|.+.+|. .|+++++.+..+..|+ +++.+
T Consensus 185 ~~~gvsKg~al~~l~~~lg---i~~~~viafGD~~NDi~Ml~~ag~---~vAm~NA~~~vK~~A~~~~v~~~ 250 (266)
T PRK10976 185 MAGGVSKGHALEAVAKKLG---YSLKDCIAFGDGMNDAEMLSMAGK---GCIMGNAHQRLKDLLPELEVIGS 250 (266)
T ss_pred EcCCCChHHHHHHHHHHcC---CCHHHeEEEcCCcccHHHHHHcCC---CeeecCCcHHHHHhCCCCeeccc
Confidence 3345567999999999999 999999999999999999999994 5666777666666665 45544
No 114
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.31 E-value=3.8e-11 Score=85.09 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=61.5
Q ss_pred CCccHHHHHHHHHhCCC--CEEEEeCCh------hhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHc
Q 026543 95 LMPGASHLIRHLHAKGI--PMCVATGSL------ARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRF 166 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~--~v~i~s~~~------~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~ 166 (237)
+.|.+.+.++.+++.+. +++|+||+. .......+.+.+|+ . ++.. ...|| ..+..+++.+
T Consensus 60 i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgI----p-vl~h-----~~kKP--~~~~~i~~~~ 127 (168)
T PF09419_consen 60 IPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGI----P-VLRH-----RAKKP--GCFREILKYF 127 (168)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCC----c-EEEe-----CCCCC--ccHHHHHHHH
Confidence 33444455566666654 599999963 12222234444443 1 1211 12455 5666777777
Q ss_pred CCC--CCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCC
Q 026543 167 EGG--PIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 167 ~~~--~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~ 202 (237)
+.. ...|+++++|||.. +|+-+|...|+.+|+|..|
T Consensus 128 ~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g 166 (168)
T PF09419_consen 128 KCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG 166 (168)
T ss_pred hhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence 610 02499999999999 9999999999999999876
No 115
>PTZ00445 p36-lilke protein; Provisional
Probab=99.30 E-value=2.1e-11 Score=88.28 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=82.2
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhH--------------HHHHHhhhhhhhhhcceeeeCC--------C-CCcc
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARH--------------FELKTQKHRELFSLMHHVVRGD--------D-PEVK 150 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~--------------~~~~~~~~~gl~~~f~~~~~~~--------~-~~~~ 150 (237)
.+.|..+.++..|++.|++++|+|-++... .....++..+...-...+++.. + ...+
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~g 154 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLG 154 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhc
Confidence 478889999999999999999999866643 2223344333333344555332 0 0246
Q ss_pred CCCCCHHH--H--HHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCC
Q 026543 151 QGKPSPDI--F--LAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 151 ~~kp~~~~--~--~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~ 203 (237)
..||+|.. | +.+++++| +.|++|+||+|+..++++|++.|+.++.+..+.
T Consensus 155 l~KPdp~iK~yHle~ll~~~g---l~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~e 208 (219)
T PTZ00445 155 LDAPMPLDKSYHLKQVCSDFN---VNPDEILFIDDDMNNCKNALKEGYIALHVTGNE 208 (219)
T ss_pred ccCCCccchHHHHHHHHHHcC---CCHHHeEeecCCHHHHHHHHHCCCEEEEcCChH
Confidence 77999998 8 99999999 999999999999999999999999999997643
No 116
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.29 E-value=2.3e-11 Score=89.81 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCC--CC-------ccCCC--CCHHHHHHH---
Q 026543 97 PGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDD--PE-------VKQGK--PSPDIFLAA--- 162 (237)
Q Consensus 97 ~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~--~~-------~~~~k--p~~~~~~~~--- 162 (237)
+++.++++.++++|++++|+|++.. .+...+++.+|+.... +++... .. ..... -|...++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~-~~i~~~~~~~~i~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~ 168 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPD-EIIEPIAERLGIDDDN--VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIR 168 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEH-HHHHHHHHHTTSSEGG--EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcH-HHHHHHHHHcCCCceE--EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHH
Confidence 6777999999999999999999755 4455677777765421 222110 00 00000 145555555
Q ss_pred HHHcCCCCCCCCcEEEEecCHHHHHHHH
Q 026543 163 AKRFEGGPIDSQEILVFEDAPSGVLAAK 190 (237)
Q Consensus 163 l~~~~~~~~~~~~~~~igD~~~Di~~a~ 190 (237)
..+ + ..+.++++||||.+|+.+++
T Consensus 169 ~~~-~---~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 169 DEE-D---IDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHH-T---HTCCEEEEEESSGGGHHHHH
T ss_pred hhc-C---CCCCeEEEEECCHHHHHHhC
Confidence 334 7 88999999999999999975
No 117
>PLN02887 hydrolase family protein
Probab=99.28 E-value=8.5e-13 Score=111.22 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=56.2
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhc
Q 026543 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLL 220 (237)
Q Consensus 149 ~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~ 220 (237)
...+..|..++.++++++| ++++++++|||+.||++|.+.+| .+|+++++.+..+..|++++.+..
T Consensus 502 ~p~gvSKG~ALk~L~e~lG---I~~eeviAFGDs~NDIeMLe~AG---~gVAMgNA~eeVK~~Ad~VT~sNd 567 (580)
T PLN02887 502 VPPGTSKGNGVKMLLNHLG---VSPDEIMAIGDGENDIEMLQLAS---LGVALSNGAEKTKAVADVIGVSND 567 (580)
T ss_pred ecCCCCHHHHHHHHHHHcC---CCHHHEEEEecchhhHHHHHHCC---CEEEeCCCCHHHHHhCCEEeCCCC
Confidence 3455667999999999999 99999999999999999999999 567778887777888888776543
No 118
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.25 E-value=2.4e-12 Score=87.84 Aligned_cols=95 Identities=20% Similarity=0.258 Sum_probs=69.8
Q ss_pred HHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecC
Q 026543 103 IRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDA 182 (237)
Q Consensus 103 l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~ 182 (237)
++.|.+.|++++|+|+.....+..+ .+.+|+.. ++-+. +.+...+..++++++ +.++++.||||.
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~R-a~~LGI~~----~~qG~-------~dK~~a~~~L~~~~~---l~~e~~ayiGDD 108 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKR-AKDLGIKH----LYQGI-------SDKLAAFEELLKKLN---LDPEEVAYVGDD 108 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHH-HHHcCCce----eeech-------HhHHHHHHHHHHHhC---CCHHHhhhhcCc
Confidence 4567888999999999877766655 56667643 33332 235789999999999 999999999999
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCcccccchhhh
Q 026543 183 PSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQL 215 (237)
Q Consensus 183 ~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~ 215 (237)
.+|+....++|..++ .....+.....++++
T Consensus 109 ~~Dlpvm~~vGls~a---~~dAh~~v~~~a~~V 138 (170)
T COG1778 109 LVDLPVMEKVGLSVA---VADAHPLLKQRADYV 138 (170)
T ss_pred cccHHHHHHcCCccc---ccccCHHHHHhhHhh
Confidence 999999999996544 333333334444444
No 119
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.25 E-value=2.3e-10 Score=87.57 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=64.7
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhH--HHHHHhhhhhhhhh-cceeeeCCCCCccCCCCCHHHHHHHHHHcCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARH--FELKTQKHRELFSL-MHHVVRGDDPEVKQGKPSPDIFLAAAKRFEG 168 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~--~~~~~~~~~gl~~~-f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~ 168 (237)
...++||+.++++.|+++|++++++||+.... .....++..|+... ++.++..+ . .++++.....+.+.++
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~--~---~~~K~~rr~~I~~~y~- 189 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKK--D---KSSKESRRQKVQKDYE- 189 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCC--C---CCCcHHHHHHHHhcCC-
Confidence 46799999999999999999999999976433 22345667788654 45666554 2 2456777777878777
Q ss_pred CCCCCCcEEEEecCHHHHHHH
Q 026543 169 GPIDSQEILVFEDAPSGVLAA 189 (237)
Q Consensus 169 ~~~~~~~~~~igD~~~Di~~a 189 (237)
+ +++|||+.+|+..+
T Consensus 190 --I----vl~vGD~~~Df~~~ 204 (266)
T TIGR01533 190 --I----VLLFGDNLLDFDDF 204 (266)
T ss_pred --E----EEEECCCHHHhhhh
Confidence 6 89999999999653
No 120
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.25 E-value=2.8e-10 Score=88.68 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHcCCCCCCC-CcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCc
Q 026543 154 PSPDIFLAAAKRFEGGPIDS-QEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDS 206 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~~-~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~ 206 (237)
.+..+++++++++| +++ +++++|||+.||++|++.+|+. |.++++.+
T Consensus 190 ~Kg~al~~l~~~~~---i~~~~~v~~~GDs~NDi~m~~~ag~~---vam~NA~~ 237 (273)
T PRK00192 190 DKGKAVRWLKELYR---RQDGVETIALGDSPNDLPMLEAADIA---VVVPGPDG 237 (273)
T ss_pred CHHHHHHHHHHHHh---ccCCceEEEEcCChhhHHHHHhCCee---EEeCCCCC
Confidence 67889999999999 999 9999999999999999999954 44555543
No 121
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.23 E-value=3.4e-11 Score=93.74 Aligned_cols=44 Identities=7% Similarity=0.018 Sum_probs=39.4
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCC---CCCcEEEEecCHHHHHHHHHcCCe
Q 026543 149 VKQGKPSPDIFLAAAKRFEGGPI---DSQEILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 149 ~~~~kp~~~~~~~~l~~~~~~~~---~~~~~~~igD~~~Di~~a~~~G~~ 195 (237)
...+..|..+++.+++++| + +++++++|||+.||++|.+.+|+.
T Consensus 182 ~~~g~sKg~al~~l~~~lg---i~~~~~~~viafGDs~NDi~Ml~~ag~g 228 (271)
T PRK03669 182 LDASAGKDQAANWLIATYQ---QLSGTRPTTLGLGDGPNDAPLLDVMDYA 228 (271)
T ss_pred ecCCCCHHHHHHHHHHHHH---hhcCCCceEEEEcCCHHHHHHHHhCCEE
Confidence 3455667899999999999 9 999999999999999999999954
No 122
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.20 E-value=3.8e-11 Score=85.41 Aligned_cols=98 Identities=23% Similarity=0.326 Sum_probs=63.9
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChh-------h---HHHH---HHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLA-------R---HFEL---KTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLA 161 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~-------~---~~~~---~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~ 161 (237)
..+++.+.|+.|.+.|+.++|+||-.. . .+.. .+++.+++. +...++.. .....||++.++..
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip--~~~~~a~~--~d~~RKP~~GM~~~ 105 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP--IQVYAAPH--KDPCRKPNPGMWEF 105 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS---EEEEECGC--SSTTSTTSSHHHHH
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc--eEEEecCC--CCCCCCCchhHHHH
Confidence 345799999999999999999998311 1 1111 222223322 22333333 34689999999999
Q ss_pred HHHHcCC-CCCCCCcEEEEecC-----------HHHHHHHHHcCCeE
Q 026543 162 AAKRFEG-GPIDSQEILVFEDA-----------PSGVLAAKNAGMSV 196 (237)
Q Consensus 162 ~l~~~~~-~~~~~~~~~~igD~-----------~~Di~~a~~~G~~~ 196 (237)
++++++. ..++.++++||||. ..|..-|.++|++.
T Consensus 106 ~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 106 ALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp HCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred HHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 9999971 11489999999996 68999999999864
No 123
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=2.1e-09 Score=75.58 Aligned_cols=156 Identities=16% Similarity=0.183 Sum_probs=93.4
Q ss_pred EEEEecCcccccchhhHHHHHHHHHHHcCCCCCHHHHHHhc--CCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhh
Q 026543 12 HVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMM--GKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQTL 89 (237)
Q Consensus 12 ~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (237)
.|+.|+|||+.-.+. ..-+...+|............ ..+..+.+.+++...+.+ .++.... .
T Consensus 5 vi~sDFDGTITl~Ds-----~~~itdtf~~~e~k~l~~~vls~tiS~rd~~g~mf~~i~~s----~~Eile~-------l 68 (220)
T COG4359 5 VIFSDFDGTITLNDS-----NDYITDTFGPGEWKALKDGVLSKTISFRDGFGRMFGSIHSS----LEEILEF-------L 68 (220)
T ss_pred EEEecCCCceEecch-----hHHHHhccCchHHHHHHHHHhhCceeHHHHHHHHHHhcCCC----HHHHHHH-------H
Confidence 566699999984331 123334444432222222222 234556666777766644 3333322 2
Q ss_pred cCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhc-----------------ceeeeCCCCCccCC
Q 026543 90 FPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLM-----------------HHVVRGDDPEVKQG 152 (237)
Q Consensus 90 ~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f-----------------~~~~~~~~~~~~~~ 152 (237)
...+...||.++++++++.++++++|+|+|....+. .+++..+-.+.. +.+...++...++.
T Consensus 69 lk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~-~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~d 147 (220)
T COG4359 69 LKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIY-PLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHD 147 (220)
T ss_pred HhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHH-HHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCC
Confidence 234789999999999999999999999997665544 455543311111 12222221123333
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcC
Q 026543 153 KPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAG 193 (237)
Q Consensus 153 kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G 193 (237)
| +. +...+. -+++.++|.|||..|+.+|+...
T Consensus 148 K--~~----vI~~l~---e~~e~~fy~GDsvsDlsaaklsD 179 (220)
T COG4359 148 K--SS----VIHELS---EPNESIFYCGDSVSDLSAAKLSD 179 (220)
T ss_pred c--ch----hHHHhh---cCCceEEEecCCcccccHhhhhh
Confidence 3 33 444555 55667999999999999999987
No 124
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.16 E-value=2.2e-09 Score=81.05 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEE
Q 026543 152 GKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVV 197 (237)
Q Consensus 152 ~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i 197 (237)
+..|+.++.++++++| ++++++++|||+.||++|.+.+|..++
T Consensus 177 ~~~Kg~al~~l~~~lg---i~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 177 SSSKGKAANWLKATYN---QPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred CCCHHHHHHHHHHHhC---CCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 3446778999999999 999999999999999999999997654
No 125
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.16 E-value=3.3e-11 Score=93.07 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=51.5
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhc
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLL 220 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~ 220 (237)
..+..|..+++.++++++ ++++++++|||+.||++|++.+|+.+++ ++..+..+..+++++.+..
T Consensus 184 ~~~~~K~~~i~~~~~~~~---~~~~~~~~~GD~~nD~~m~~~~~~~~a~---~na~~~~k~~a~~~~~~n~ 248 (256)
T TIGR00099 184 AKGVSKGSALQSLAEALG---ISLEDVIAFGDGMNDIEMLEAAGYGVAM---GNADEELKALADYVTDSNN 248 (256)
T ss_pred CCCCChHHHHHHHHHHcC---CCHHHEEEeCCcHHhHHHHHhCCceeEe---cCchHHHHHhCCEEecCCC
Confidence 345667999999999999 9999999999999999999999976443 4554455666777766543
No 126
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.11 E-value=1.3e-10 Score=98.52 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=84.7
Q ss_pred CCCCCccHHHHHHHHHhCCC-CEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 92 TSELMPGASHLIRHLHAKGI-PMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~-~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
..+++||+.++++.|+++|+ +++++||... .....+++.+|+..+|..+. | +....++++++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~-~~a~~i~~~lgi~~~f~~~~-----------p--~~K~~~i~~l~--- 422 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRR-AVAERVARELGIDEVHAELL-----------P--EDKLEIVKELR--- 422 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCH-HHHHHHHHHcCChhhhhccC-----------c--HHHHHHHHHHH---
Confidence 35789999999999999999 9999999544 45557788889877664332 1 12245677777
Q ss_pred CCCCcEEEEecCHHHHHHHHHcCCeEEEEcCC-CCCcccccchhhhh--hhhcccC
Q 026543 171 IDSQEILVFEDAPSGVLAAKNAGMSVVMVPDP-RLDSSYHSNADQLL--SSLLGFN 223 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~-~~~~~~~~~~~~~~--~~~~el~ 223 (237)
..+++++||||+.||+++++.+| ++++.+ ...+.....+|.++ +++.++.
T Consensus 423 ~~~~~v~~vGDg~nD~~al~~A~---vgia~g~~~~~~~~~~ad~vl~~~~l~~l~ 475 (536)
T TIGR01512 423 EKYGPVAMVGDGINDAPALAAAD---VGIAMGASGSDVAIETADVVLLNDDLSRLP 475 (536)
T ss_pred hcCCEEEEEeCCHHHHHHHHhCC---EEEEeCCCccHHHHHhCCEEEECCCHHHHH
Confidence 67789999999999999999999 567766 33444455677777 6777764
No 127
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=99.10 E-value=4e-10 Score=83.11 Aligned_cols=171 Identities=18% Similarity=0.212 Sum_probs=89.9
Q ss_pred cE-EEEecCcccccchhhHHHHHHHHHHHcCCC--CCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 026543 11 TH-VIFDMDGLLLDTEKFYTEVQELILARYNKT--FDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQ 87 (237)
Q Consensus 11 ~~-vifD~DGTL~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (237)
++ |++||||||.|..+.+...+. +.++.. .+.+....+ ...+.++.. ..+......+.+..
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n---~~~~~~~~~~~~~~~~~----------~~~~~~g~~---~~e~~~~~~~~~~~ 65 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFN---EEFGKNPELTPEDITGY----------WDWEKWGIT---EPEFYEKLWRFYEE 65 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHH---HHTTTS----GGGGTSS----------SHHHHHHHH---STTHHHHHHHHHTS
T ss_pred CcEEEEECCCCCcccHHHHHHHHH---HHcCCCCCCCHHHhhhh----------hHHHHhCCC---CHHHHHHHHHHHhC
Confidence 45 899999999999876555544 455554 333322100 011112111 01111222222211
Q ss_pred -hhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhh------HHHHHHhhh-hhhhhhcceeeeCCCCCccCCCCCHHHH
Q 026543 88 -TLFPTSELMPGASHLIRHLHAKGIPMCVATGSLAR------HFELKTQKH-RELFSLMHHVVRGDDPEVKQGKPSPDIF 159 (237)
Q Consensus 88 -~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~------~~~~~~~~~-~gl~~~f~~~~~~~~~~~~~~kp~~~~~ 159 (237)
.++...++.||+.++++.|.+.|..++++|.+... .....+++. ++...+-+.+++++ |
T Consensus 66 ~~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~-------K------ 132 (191)
T PF06941_consen 66 PGFFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD-------K------ 132 (191)
T ss_dssp TTTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS-------G------
T ss_pred hhhhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC-------C------
Confidence 24567899999999999999998777777765433 223344443 23222224444433 2
Q ss_pred HHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCC
Q 026543 160 LAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~ 224 (237)
..++ .+ ++|+|++..+..+...|+++|++..+.+.... ....+.++.|+..
T Consensus 133 ----~~v~---~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~ei~~ 183 (191)
T PF06941_consen 133 ----TLVG---GD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEEIED 183 (191)
T ss_dssp ----GGC-----S----EEEESSSHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTSHHH
T ss_pred ----CeEe---cc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHHHHH
Confidence 0234 33 89999999999999999999999887664322 4556677776543
No 128
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.08 E-value=5e-10 Score=85.62 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=48.7
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCH
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSP 156 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~ 156 (237)
.||+.++|+.|+++|++++|+|++...... ..++.+|+..+|+.+++++ +....||++
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~-~~L~~lGLd~YFdvIIs~G--dv~~~kp~~ 205 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVV-ESMRKVKLDRYFDIIISGG--HKAEEYSTM 205 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHH-HHHHHcCCCcccCEEEECC--ccccCCCCc
Confidence 488999999999999999999998887766 5788899999999999887 555555555
No 129
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.06 E-value=2.6e-10 Score=87.02 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=48.1
Q ss_pred CccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchh
Q 026543 148 EVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNAD 213 (237)
Q Consensus 148 ~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~ 213 (237)
..+.+++|+.+++.++++++ ++++++++|||+.||++|++.+|.. |..++..+..+..++
T Consensus 153 i~~~~~~K~~al~~l~~~~g---~~~~~~i~~GD~~nD~~ml~~~~~~---iav~na~~~~k~~a~ 212 (236)
T TIGR02471 153 VLPLRASKGLALRYLSYRWG---LPLEQILVAGDSGNDEEMLRGLTLG---VVVGNHDPELEGLRH 212 (236)
T ss_pred EeeCCCChHHHHHHHHHHhC---CCHHHEEEEcCCccHHHHHcCCCcE---EEEcCCcHHHHHhhc
Confidence 44567789999999999999 9999999999999999999999854 344555444444455
No 130
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.05 E-value=1.9e-11 Score=93.98 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=53.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcc
Q 026543 151 QGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLG 221 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~e 221 (237)
.+..|..+++.+++.+| ++++++++|||+.||++|.+.+| ..|.++++.+..+..|++++.+-.+
T Consensus 183 ~~vsK~~ai~~l~~~~~---i~~~~~~~~GD~~ND~~Ml~~~~---~~~am~na~~~~k~~a~~i~~~~~~ 247 (254)
T PF08282_consen 183 KGVSKGSAIKYLLEYLG---ISPEDIIAFGDSENDIEMLELAG---YSVAMGNATPELKKAADYITPSNND 247 (254)
T ss_dssp TTSSHHHHHHHHHHHHT---TSGGGEEEEESSGGGHHHHHHSS---EEEEETTS-HHHHHHSSEEESSGTC
T ss_pred CCCCHHHHHHHHhhhcc---cccceeEEeecccccHhHHhhcC---eEEEEcCCCHHHHHhCCEEecCCCC
Confidence 44567899999999999 99999999999999999999999 5566677777777777777666554
No 131
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.05 E-value=2.8e-10 Score=97.10 Aligned_cols=111 Identities=19% Similarity=0.168 Sum_probs=82.4
Q ss_pred CCCCCccHHHHHHHHHhCC-CCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 92 TSELMPGASHLIRHLHAKG-IPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g-~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
..+++||+.++++.|+++| ++++++||.... ....+++.+|+..+|..+. |+....++++++
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~-~a~~i~~~lgi~~~f~~~~-------------p~~K~~~v~~l~--- 444 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRS-AAEAVAAELGIDEVHAELL-------------PEDKLAIVKELQ--- 444 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHH-HHHHHHHHhCCCeeeccCC-------------HHHHHHHHHHHH---
Confidence 3679999999999999999 999999995554 4556788888866665431 122345667776
Q ss_pred CCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhh--hhccc
Q 026543 171 IDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLS--SLLGF 222 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~el 222 (237)
..+.+++||||+.||+++++++| ++++++...+.....+|+++. ++..+
T Consensus 445 ~~~~~v~~vGDg~nD~~al~~A~---vgia~g~~~~~~~~~Ad~vi~~~~~~~l 495 (556)
T TIGR01525 445 EEGGVVAMVGDGINDAPALAAAD---VGIAMGAGSDVAIEAADIVLLNDDLSSL 495 (556)
T ss_pred HcCCEEEEEECChhHHHHHhhCC---EeEEeCCCCHHHHHhCCEEEeCCCHHHH
Confidence 66779999999999999999999 667766544444556777766 44443
No 132
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.02 E-value=3.6e-09 Score=81.35 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=43.6
Q ss_pred CccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcC
Q 026543 148 EVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 148 ~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~ 201 (237)
....+.+|..++++++++++ ++++++++|||+.||++|++.++..++.+..
T Consensus 161 i~~~~~~K~~al~~l~~~~~---i~~~~~i~~GD~~ND~~ml~~~~~~~va~~n 211 (249)
T TIGR01485 161 ILPQGSGKGQALQYLLQKLA---MEPSQTLVCGDSGNDIELFEIGSVRGVIVSN 211 (249)
T ss_pred EEeCCCChHHHHHHHHHHcC---CCccCEEEEECChhHHHHHHccCCcEEEECC
Confidence 34567889999999999999 9999999999999999999996655566643
No 133
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.97 E-value=3.4e-08 Score=76.29 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=42.4
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCC--CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCC
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPID--SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLD 205 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~--~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~ 205 (237)
+.+..|..++++++++++ ++ .+++++|||+.||++|.+.+| ..|.++++.
T Consensus 172 ~~~~~Kg~ai~~l~~~~~---i~~~~~~~~a~GD~~ND~~Ml~~ag---~~vam~Na~ 223 (256)
T TIGR01486 172 GAGSDKGKAANALKQFYN---QPGGAIKVVGLGDSPNDLPLLEVVD---LAVVVPGPN 223 (256)
T ss_pred cCCCCHHHHHHHHHHHHh---hcCCCceEEEEcCCHhhHHHHHHCC---EEEEeCCCC
Confidence 345667889999999999 99 999999999999999999999 455555553
No 134
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.96 E-value=4.8e-08 Score=71.27 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=87.2
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhh---hhh----hhhcceeeeCCCCCccCCCCCHHHHHHHHHH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKH---REL----FSLMHHVVRGDDPEVKQGKPSPDIFLAAAKR 165 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~---~gl----~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~ 165 (237)
.+.++++...++..+..|++++|.|.++...... +..+ ..+ ..|||.-+ + .|-....|..+.+.
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKl-lfg~s~~gdl~~y~~gyfDt~i-------G-~K~e~~sy~~I~~~ 192 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKL-LFGYSDAGDLRKYISGYFDTTI-------G-LKVESQSYKKIGHL 192 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHH-HHcccCcchHHHHhhhhhhccc-------c-ceehhHHHHHHHHH
Confidence 4789999999999999999999999977764432 2222 122 33444432 2 35567889999999
Q ss_pred cCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccch--hhhhhhhccc
Q 026543 166 FEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNA--DQLLSSLLGF 222 (237)
Q Consensus 166 ~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~--~~~~~~~~el 222 (237)
++ .++.+++|+-|-.....+|+.+|+.+..+.++.+........ --++.+|+.+
T Consensus 193 Ig---~s~~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l 248 (254)
T KOG2630|consen 193 IG---KSPREILFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEIL 248 (254)
T ss_pred hC---CChhheEEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhh
Confidence 99 999999999999999999999999998888877744322222 3455666554
No 135
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.93 E-value=2.5e-09 Score=91.25 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=78.5
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.+++|++.++++.|+++|++++++|+.... ....+.+.+|+. ++ .+ . + |+....+++++. .+
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~-~a~~ia~~lgi~-----~~-~~--~----~--p~~K~~~v~~l~---~~ 465 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRK-TAKAVAKELGIN-----VR-AE--V----L--PDDKAALIKELQ---EK 465 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHH-HHHHHHHHcCCc-----EE-cc--C----C--hHHHHHHHHHHH---Hc
Confidence 568999999999999999999999995554 455678888874 22 22 1 1 223345666666 66
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhh--hhhccc
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLL--SSLLGF 222 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~el 222 (237)
+++|+||||+.||+++++++|+ ++.++...+.....+|.++ +++.++
T Consensus 466 ~~~v~~VGDg~nD~~al~~A~v---gia~g~g~~~a~~~Advvl~~~~l~~l 514 (562)
T TIGR01511 466 GRVVAMVGDGINDAPALAQADV---GIAIGAGTDVAIEAADVVLMRNDLNDV 514 (562)
T ss_pred CCEEEEEeCCCccHHHHhhCCE---EEEeCCcCHHHHhhCCEEEeCCCHHHH
Confidence 7899999999999999999994 5666655444455677666 355544
No 136
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.91 E-value=2.4e-09 Score=80.88 Aligned_cols=43 Identities=7% Similarity=0.114 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHcCCCCC--CCCcEEEEecCHHHHHHHHHcCCeEE
Q 026543 152 GKPSPDIFLAAAKRFEGGPI--DSQEILVFEDAPSGVLAAKNAGMSVV 197 (237)
Q Consensus 152 ~kp~~~~~~~~l~~~~~~~~--~~~~~~~igD~~~Di~~a~~~G~~~i 197 (237)
+-.++.+...+++.++ + ++.++++|||+.||++|.+.+|+.++
T Consensus 179 ~~sK~~al~~l~~~~~---~~~~~~~~i~~GD~~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYK---LRPGAIESVGLGDSENDFPMFEVVDLAFL 223 (225)
T ss_pred CCCHHHHHHHHHHHhc---cccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence 4445788888888887 5 67799999999999999999997644
No 137
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.91 E-value=7e-10 Score=79.34 Aligned_cols=99 Identities=6% Similarity=0.064 Sum_probs=81.3
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhh-hcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFS-LMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~-~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
.+...||+.++|..|.+. +.++|.|++...+.. .+++.++... +|+.+++.+ .....+++ +.+.++.+|
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~-~il~~ldp~~~~f~~~l~r~--~~~~~~~~---~~K~L~~l~--- 109 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYAD-PVLDILDRGGKVISRRLYRE--SCVFTNGK---YVKDLSLVG--- 109 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHH-HHHHHHCcCCCEEeEEEEcc--ccEEeCCC---EEeEchhcC---
Confidence 377999999999999988 999999997776555 5778777665 888888887 44444444 677888899
Q ss_pred CCCCcEEEEecCHHHHHHHHHcCCeEEEEc
Q 026543 171 IDSQEILVFEDAPSGVLAAKNAGMSVVMVP 200 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~ 200 (237)
.+++++++|||++.++.++..+|+.+....
T Consensus 110 ~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 110 KDLSKVIIIDNSPYSYSLQPDNAIPIKSWF 139 (162)
T ss_pred CChhhEEEEeCChhhhccCccCEeecCCCC
Confidence 999999999999999999999997655554
No 138
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.90 E-value=2.3e-09 Score=96.06 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=93.7
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCc----------------cCCCCCH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEV----------------KQGKPSP 156 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~----------------~~~kp~~ 156 (237)
.++.|++.+.++.|++.|++++++|+ +.......+.+.+|+...++.++++. +. -.....|
T Consensus 527 Dp~r~~~~~~i~~l~~~Gi~v~miTG-D~~~tA~~ia~~~Gi~~~~~~~v~g~--~l~~~~~~~l~~~~~~~~Vfar~~P 603 (884)
T TIGR01522 527 DPPRPGVKEAVTTLITGGVRIIMITG-DSQETAVSIARRLGMPSKTSQSVSGE--KLDAMDDQQLSQIVPKVAVFARASP 603 (884)
T ss_pred CcchhHHHHHHHHHHHCCCeEEEECC-CCHHHHHHHHHHcCCCCCCCceeEhH--HhHhCCHHHHHHHhhcCeEEEECCH
Confidence 37899999999999999999999999 44445556788889877666665554 22 2334677
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCC-CCcccccchhhhh--hhhcccCC
Q 026543 157 DIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPR-LDSSYHSNADQLL--SSLLGFNP 224 (237)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~-~~~~~~~~~~~~~--~~~~el~~ 224 (237)
+....+.+.+. -..+.+.|+||+.||+.+++.|+ ++|+.|. ..+..+..+|.++ ++++.+..
T Consensus 604 ~~K~~iv~~lq---~~g~~v~mvGDGvND~pAl~~Ad---VGia~g~~g~~va~~aaDivl~dd~~~~i~~ 668 (884)
T TIGR01522 604 EHKMKIVKALQ---KRGDVVAMTGDGVNDAPALKLAD---IGVAMGQTGTDVAKEAADMILTDDDFATILS 668 (884)
T ss_pred HHHHHHHHHHH---HCCCEEEEECCCcccHHHHHhCC---eeEecCCCcCHHHHHhcCEEEcCCCHHHHHH
Confidence 78888888887 67789999999999999999999 6777764 3444456778877 55766543
No 139
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.89 E-value=9.1e-09 Score=68.23 Aligned_cols=121 Identities=13% Similarity=0.230 Sum_probs=93.5
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
-.+++.+.+.++.|+.. ++++|.|+ ++.-....+++..|+. .+.++.+. .++....+++.++ -+
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASg-Dr~gsl~~lae~~gi~--~~rv~a~a---------~~e~K~~ii~eLk---k~ 92 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASG-DRKGSLVQLAEFVGIP--VERVFAGA---------DPEMKAKIIRELK---KR 92 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecC-CcchHHHHHHHHcCCc--eeeeeccc---------CHHHHHHHHHHhc---CC
Confidence 46889999999999999 99999998 4444444566665542 34555444 4677889999999 77
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCCCCCC
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPKDWGL 229 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~l~~l 229 (237)
.+.++||||+.||+.+.+++....+-+.....++.....+|.++.+..|+...+..+
T Consensus 93 ~~k~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e~ldl~~~~ 149 (152)
T COG4087 93 YEKVVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEILDLLKDT 149 (152)
T ss_pred CcEEEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHHHHHHhhcc
Confidence 799999999999999999998877777665556555678999999998887665443
No 140
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.82 E-value=2.3e-08 Score=76.68 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=65.3
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCC---------------------------C
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDP---------------------------E 148 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~---------------------------~ 148 (237)
.|++.++|+.|+++|++++|+||+...... ..++..|+..+|+.++++++. +
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~-~~Le~lgL~~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~ 228 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVV-HSLKETKLEGYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVT 228 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHH-HHHHHcCCCccccEEEECCCcccccccceeecccceeEEecCceeEeCC
Confidence 488889999999999999999998777665 578889999999988876510 0
Q ss_pred c--cCCCCCHHHHHHHHHHcCCCCCCC-CcEEEEecCH-HHH
Q 026543 149 V--KQGKPSPDIFLAAAKRFEGGPIDS-QEILVFEDAP-SGV 186 (237)
Q Consensus 149 ~--~~~kp~~~~~~~~l~~~~~~~~~~-~~~~~igD~~-~Di 186 (237)
. .-+| +|....+.|++.| +.. +.+..|+|=. ||+
T Consensus 229 ~~~~lPK-SprvVl~yL~~~g---vn~~KtiTLVDDl~~Nn~ 266 (303)
T PHA03398 229 DVKNLPK-SPRVVLWYLRKKG---VNYFKTITLVDDLKSNNY 266 (303)
T ss_pred cccCCCC-CCeehHHHHHHcC---cceeccEEEeccCcccCc
Confidence 0 1112 5677888999999 775 5677778776 554
No 141
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.80 E-value=1.3e-08 Score=78.01 Aligned_cols=93 Identities=20% Similarity=0.321 Sum_probs=74.4
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHH-HHHhhhhhhhh-hcceeeeCCCCCccCCCCCHHHHHHHHHHcCCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFE-LKTQKHRELFS-LMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGG 169 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~-~~~~~~~gl~~-~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~ 169 (237)
...++||+.++|+.|+++|++++++||+...... ...++.+|+.. +|+.++++. ... ...+...+++++
T Consensus 22 ~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~--~~~-----~~~l~~~~~~~~-- 92 (242)
T TIGR01459 22 GNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSG--EIA-----VQMILESKKRFD-- 92 (242)
T ss_pred CCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccH--HHH-----HHHHHhhhhhcc--
Confidence 4668999999999999999999999997665432 14578889987 899999887 332 245666778888
Q ss_pred CCCCCcEEEEecCHHHHHHHHHcCC
Q 026543 170 PIDSQEILVFEDAPSGVLAAKNAGM 194 (237)
Q Consensus 170 ~~~~~~~~~igD~~~Di~~a~~~G~ 194 (237)
.+++++++|||+..|++....+|.
T Consensus 93 -~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 93 -IRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred -CCCceEEEeCCcccchhhhcCCCc
Confidence 899999999999999887766554
No 142
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.76 E-value=6.7e-07 Score=76.30 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCCcEEEE--ecCHHHHHHHHHcCCeEEE
Q 026543 151 QGKPSPDIFLAAAKRFEGGPIDSQEILVF--EDAPSGVLAAKNAGMSVVM 198 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~~~~~~~~~~~~~i--gD~~~Di~~a~~~G~~~i~ 198 (237)
.+..|..+++++++.++ ++.++++.| ||+.||++|.+.+|..+++
T Consensus 610 ~gvdKG~AL~~L~e~~g---I~~~eViafalGDs~NDisMLe~Ag~gVAM 656 (694)
T PRK14502 610 GGNDKGKAIKILNELFR---LNFGNIHTFGLGDSENDYSMLETVDSPILV 656 (694)
T ss_pred CCCCHHHHHHHHHHHhC---CCccceEEEEcCCcHhhHHHHHhCCceEEE
Confidence 35567899999999999 999999999 9999999999999987555
No 143
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.74 E-value=4.1e-08 Score=65.15 Aligned_cols=93 Identities=13% Similarity=0.171 Sum_probs=68.3
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCC---
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEG--- 168 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~--- 168 (237)
.+.+++.+++++.+++..|+.+..+|=+.... ..+.++.+++..+|+.++.-. . +. +..++.+++.+++.
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k-A~~aLral~~~~yFhy~VieP--h--P~--K~~ML~~llr~i~~er~ 111 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDK-AIKALRALDLLQYFHYIVIEP--H--PY--KFLMLSQLLREINTERN 111 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHH-HHHHHHHhchhhhEEEEEecC--C--Ch--hHHHHHHHHHHHHHhhc
Confidence 47899999999999999999999998644443 335688889999999988554 1 11 24556666665541
Q ss_pred CCCCCCcEEEEecCHHHHHHHHH
Q 026543 169 GPIDSQEILVFEDAPSGVLAAKN 191 (237)
Q Consensus 169 ~~~~~~~~~~igD~~~Di~~a~~ 191 (237)
..+.|.+++|++|+.-.+.-...
T Consensus 112 ~~ikP~~Ivy~DDR~iH~~~Iwe 134 (164)
T COG4996 112 QKIKPSEIVYLDDRRIHFGNIWE 134 (164)
T ss_pred cccCcceEEEEecccccHHHHHH
Confidence 23899999999999855544443
No 144
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.73 E-value=3.1e-08 Score=88.55 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=79.2
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.+++|++.+.++.|++.|++++++|+.... ....+.+.+|+..+|..+ .|+....++++++ ..
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~-~a~~ia~~lgi~~~~~~~-------------~p~~K~~~i~~l~---~~ 711 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPT-TANAIAKEAGIDEVIAGV-------------LPDGKAEAIKRLQ---SQ 711 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHH-HHHHHHHHcCCCEEEeCC-------------CHHHHHHHHHHHh---hc
Confidence 478999999999999999999999995544 444678888875433221 1334566888888 78
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccch--hhhhhhhccc
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNA--DQLLSSLLGF 222 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~--~~~~~~~~el 222 (237)
+++++||||+.||+++++.+|+ +|.+++..+.....+ ....++++++
T Consensus 712 ~~~v~~vGDg~nD~~al~~Agv---gia~g~g~~~a~~~ad~vl~~~~~~~i 760 (834)
T PRK10671 712 GRQVAMVGDGINDAPALAQADV---GIAMGGGSDVAIETAAITLMRHSLMGV 760 (834)
T ss_pred CCEEEEEeCCHHHHHHHHhCCe---eEEecCCCHHHHHhCCEEEecCCHHHH
Confidence 8899999999999999999995 666665543333333 3344555554
No 145
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.72 E-value=1.3e-07 Score=62.04 Aligned_cols=85 Identities=18% Similarity=0.204 Sum_probs=53.6
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhHH--HHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARHF--ELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~--~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
.+.||+.++++.|+++|.+++++||++.... ....++.+|+....+.++++. ......+++..
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~-----------~~~~~~l~~~~---- 78 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSG-----------MAAAEYLKEHK---- 78 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHH-----------HHHHHHHHHHT----
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChH-----------HHHHHHHHhcC----
Confidence 4899999999999999999999999764331 122346677776666676554 23444444422
Q ss_pred CCCcEEEEecCHHHHHHHHHcCC
Q 026543 172 DSQEILVFEDAPSGVLAAKNAGM 194 (237)
Q Consensus 172 ~~~~~~~igD~~~Di~~a~~~G~ 194 (237)
...+++++|-. ...+.++.+|+
T Consensus 79 ~~~~v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 79 GGKKVYVLGSD-GLREELREAGF 100 (101)
T ss_dssp TSSEEEEES-H-HHHHHHHHTTE
T ss_pred CCCEEEEEcCH-HHHHHHHHcCC
Confidence 35678888755 55566666664
No 146
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.70 E-value=2.8e-07 Score=65.54 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=58.3
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHH--HHHhhhh---hhhhhcceeeeCCCCCc-------cCCCC---CHHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFE--LKTQKHR---ELFSLMHHVVRGDDPEV-------KQGKP---SPDIF 159 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~--~~~~~~~---gl~~~f~~~~~~~~~~~-------~~~kp---~~~~~ 159 (237)
..|++.++++.++++|++++++|++...... ..+++.+ |..-....+++.+.... ...+| +...+
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l 107 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIACL 107 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHHHHH
Confidence 4689999999999999999999997765542 2344431 11111124444431111 12233 33344
Q ss_pred HHHHHHcCCCCCCCCcE-EEEecCHHHHHHHHHcCCe
Q 026543 160 LAAAKRFEGGPIDSQEI-LVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 160 ~~~l~~~~~~~~~~~~~-~~igD~~~Di~~a~~~G~~ 195 (237)
..+.+.+. -..-.. ..+||+.+|+++=+++|+.
T Consensus 108 ~~i~~~~~---~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 108 RDIKSLFP---PQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHhcC---CCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 45554443 222233 3478889999999999986
No 147
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.70 E-value=2.5e-08 Score=77.28 Aligned_cols=66 Identities=11% Similarity=-0.001 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHc----CCeEEEEcCCCCCcccccchhhhhhhhcccCCCC
Q 026543 151 QGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNA----GMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~----G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~l 226 (237)
.+..|..++++++++++ +..+++++|||+.||..|.+.+ | ..|..++. ...|.+.+++..++..+|
T Consensus 171 ~g~~Kg~al~~ll~~~~---~~~~~v~~~GD~~nD~~mf~~~~~~~g---~~vavg~a----~~~A~~~l~~~~~v~~~L 240 (266)
T PRK10187 171 RGTNKGEAIAAFMQEAP---FAGRTPVFVGDDLTDEAGFAVVNRLGG---ISVKVGTG----ATQASWRLAGVPDVWSWL 240 (266)
T ss_pred CCCCHHHHHHHHHHhcC---CCCCeEEEEcCCccHHHHHHHHHhcCC---eEEEECCC----CCcCeEeCCCHHHHHHHH
Confidence 44567899999999999 9999999999999999999998 5 33444444 233455555555554443
No 148
>PLN02382 probable sucrose-phosphatase
Probab=98.68 E-value=1.6e-07 Score=77.04 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHc---CCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCC
Q 026543 151 QGKPSPDIFLAAAKRF---EGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLD 205 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~---~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~ 205 (237)
.+-.|..+++.+++++ | ++++++++|||+.||++|.+.+|...+.+ +++.
T Consensus 172 ~g~sKg~Al~~L~~~~~~~g---i~~~~~iafGDs~NDleMl~~ag~~gvam--~NA~ 224 (413)
T PLN02382 172 QGAGKGQALAYLLKKLKAEG---KAPVNTLVCGDSGNDAELFSVPDVYGVMV--SNAQ 224 (413)
T ss_pred CCCCHHHHHHHHHHHhhhcC---CChhcEEEEeCCHHHHHHHhcCCCCEEEE--cCCc
Confidence 4455789999999999 8 99999999999999999999999533333 4443
No 149
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.67 E-value=9.4e-08 Score=67.00 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=67.7
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhHH---HHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARHF---ELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~---~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
.+-+-+++++....++|-.++.+|+++...+ ...+.+.+.+....-.++.++ .+||.....-.+++..+
T Consensus 114 IPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gd-----k~k~~qy~Kt~~i~~~~--- 185 (237)
T COG3700 114 IPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGD-----KPKPGQYTKTQWIQDKN--- 185 (237)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccC-----CCCcccccccHHHHhcC---
Confidence 3555678899999999999999999776543 334445555544444556665 22433334445666666
Q ss_pred CCCCcEEEEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 171 IDSQEILVFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
+ -++.|||.+||-+|+.+|++.|-+-+.
T Consensus 186 ~----~IhYGDSD~Di~AAkeaG~RgIRilRA 213 (237)
T COG3700 186 I----RIHYGDSDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred c----eEEecCCchhhhHHHhcCccceeEEec
Confidence 3 489999999999999999998877553
No 150
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.67 E-value=1.1e-06 Score=65.69 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=64.1
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhH--HHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARH--FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGG 169 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~--~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~ 169 (237)
..++.|++.++++.++++|+.|+++|++.... .....+...|+..+ +.++-.. .....++.........+++-
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~--~~d~~~~~~~yKs~~R~~l~-- 192 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLILRG--LEDSNKTVVTYKSEVRKSLM-- 192 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-CeeeecC--CCCCCchHhHHHHHHHHHHH--
Confidence 46899999999999999999999999987544 23344555676654 4443322 11122322222233333332
Q ss_pred CCCCC-cEEEEecCHHHHHHHHHcCCeEEEEcCCC
Q 026543 170 PIDSQ-EILVFEDAPSGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 170 ~~~~~-~~~~igD~~~Di~~a~~~G~~~i~v~~~~ 203 (237)
-..- =+..|||..+|+.+ ..+|.++..++.+.
T Consensus 193 -~~GYrIv~~iGDq~sDl~G-~~~~~RtFKLPNPm 225 (229)
T TIGR01675 193 -EEGYRIWGNIGDQWSDLLG-SPPGRRTFKLPNPM 225 (229)
T ss_pred -hCCceEEEEECCChHHhcC-CCccCceeeCCCCc
Confidence 2223 35668999999955 45666666665543
No 151
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.60 E-value=5.2e-08 Score=73.59 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=61.6
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhH--HHHHHhhhhhhhhhcceeeeCCCCCccCC----CCCHHHHHHHHHH-
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARH--FELKTQKHRELFSLMHHVVRGDDPEVKQG----KPSPDIFLAAAKR- 165 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~--~~~~~~~~~gl~~~f~~~~~~~~~~~~~~----kp~~~~~~~~l~~- 165 (237)
.++.|++.++++.++++|+.|+++||+.... ....-++..|...+-..++.+. ..... .-+..-...+.++
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~--~~~~~~~~~~yK~~~r~~i~~~G 191 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPD--KDPSKKSAVEYKSERRKEIEKKG 191 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEE--SSTSS------SHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccc--cccccccccccchHHHHHHHHcC
Confidence 4789999999999999999999999976553 2333455566554433333333 11111 1133334444444
Q ss_pred cCCCCCCCCcEEEEecCHHHHHHHHHc---CCeEEEEcCC
Q 026543 166 FEGGPIDSQEILVFEDAPSGVLAAKNA---GMSVVMVPDP 202 (237)
Q Consensus 166 ~~~~~~~~~~~~~igD~~~Di~~a~~~---G~~~i~v~~~ 202 (237)
+. =+++|||..+|+..++.. |-+.+.++.+
T Consensus 192 y~-------Ii~~iGD~~~D~~~~~~~~~~~~r~f~lPNp 224 (229)
T PF03767_consen 192 YR-------IIANIGDQLSDFSGAKTAGARAERWFKLPNP 224 (229)
T ss_dssp EE-------EEEEEESSGGGCHCTHHHHHHHTTEEE-TTS
T ss_pred Cc-------EEEEeCCCHHHhhcccccccccceEEEcCCC
Confidence 33 378899999999985443 3445555443
No 152
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.60 E-value=3.7e-06 Score=70.40 Aligned_cols=173 Identities=15% Similarity=0.038 Sum_probs=85.0
Q ss_pred ccEEEEecCcccccchhhHHHHHHHHHHHcCC-------C-CCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHH
Q 026543 10 ITHVIFDMDGLLLDTEKFYTEVQELILARYNK-------T-FDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQ 81 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (237)
-+.++||+||||+.++..+...+.-+++.-+. . ...-..... +.+.....+.+....=.. ...+++...
T Consensus 22 ~~~~~FDfDGTLt~~~s~f~~Fll~A~~~~~~~r~lllll~~P~~~l~~~-~~~~~~~~~~l~~~~f~G--~~~~el~~~ 98 (497)
T PLN02177 22 NQTVAADLDGTLLISRSAFPYYLLVALEAGSLLRALILLLSVPFVYFTYL-FISESLAIKTFVFIAFAG--LKIRDIELV 98 (497)
T ss_pred ccEEEEecCCcccCCCCccHHHHHHHcccchHHHHHHHHHHhHHHHHHHh-cCCchhHHHHHHHHHHcC--CCHHHHHHH
Confidence 46799999999998664433222211111110 0 011111111 223333333333332111 456666555
Q ss_pred HHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhh-hhhhhhc--------ceeeeCCCCCccCC
Q 026543 82 REETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKH-RELFSLM--------HHVVRGDDPEVKQG 152 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~-~gl~~~f--------~~~~~~~~~~~~~~ 152 (237)
.+....+.... .+.+.+.+. ++++|. .+|+|.+... +...+++. +|++... ++.++|. -.+..
T Consensus 99 ~r~~l~~f~~~-~l~~~a~~~---~~~~g~-~vvVSASp~~-~Vepfa~~~LGid~VIgTeLev~~~G~~TG~--i~g~~ 170 (497)
T PLN02177 99 SRSVLPKFYAE-DVHPETWRV---FNSFGK-RYIITASPRI-MVEPFVKTFLGADKVLGTELEVSKSGRATGF--MKKPG 170 (497)
T ss_pred HHHHHHHHHHH-hcCHHHHHH---HHhCCC-EEEEECCcHH-HHHHHHHHcCCCCEEEecccEECcCCEEeee--ecCCC
Confidence 54444443322 255555554 455664 5899985544 44467754 6654321 2333332 11110
Q ss_pred CCCH-HHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEE
Q 026543 153 KPSP-DIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVV 197 (237)
Q Consensus 153 kp~~-~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i 197 (237)
--.. +-...+.+.++ .+... +++|||.+|.++...|+-..+
T Consensus 171 ~c~Ge~Kv~rl~~~~g---~~~~~-~aYgDS~sD~plL~~a~e~y~ 212 (497)
T PLN02177 171 VLVGDHKRDAVLKEFG---DALPD-LGLGDRETDHDFMSICKEGYM 212 (497)
T ss_pred CCccHHHHHHHHHHhC---CCCce-EEEECCccHHHHHHhCCccEE
Confidence 0011 12333335566 44444 899999999999999996533
No 153
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.57 E-value=1.8e-07 Score=84.36 Aligned_cols=124 Identities=14% Similarity=0.111 Sum_probs=86.5
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhc----ceeeeCCCC--------------CccCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLM----HHVVRGDDP--------------EVKQGKP 154 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f----~~~~~~~~~--------------~~~~~kp 154 (237)
.++.+++.+.++.|++.|++++++|+... .....+.+..|+...- ...+.+..- ..-..+.
T Consensus 536 Dplr~~v~e~I~~l~~aGI~v~miTGD~~-~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~ 614 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAGIRVIMITGDNK-ETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRV 614 (917)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEecCCCH-HHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEec
Confidence 46899999999999999999999998443 4444677777774311 112222100 0112334
Q ss_pred CHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhh--hcccC
Q 026543 155 SPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSS--LLGFN 223 (237)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~--~~el~ 223 (237)
.|+-...+++.++ -..+.+.|+||+.||+.|.+.|+ ++|+.+...+..+..+|+++.+ |..+.
T Consensus 615 ~P~~K~~iV~~lq---~~g~~va~iGDG~ND~~alk~Ad---VGia~g~g~~~ak~aAD~vl~dd~f~~i~ 679 (917)
T TIGR01116 615 EPSHKSELVELLQ---EQGEIVAMTGDGVNDAPALKKAD---IGIAMGSGTEVAKEASDMVLADDNFATIV 679 (917)
T ss_pred CHHHHHHHHHHHH---hcCCeEEEecCCcchHHHHHhCC---eeEECCCCcHHHHHhcCeEEccCCHHHHH
Confidence 5666677888887 66778999999999999999999 5666665555556678888766 66554
No 154
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.56 E-value=1.2e-05 Score=61.74 Aligned_cols=110 Identities=13% Similarity=0.208 Sum_probs=75.2
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHH--HHHhhhhhhhh--h-c--ceee-----eC---------CCCCcc
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFE--LKTQKHRELFS--L-M--HHVV-----RG---------DDPEVK 150 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~--~~~~~~~gl~~--~-f--~~~~-----~~---------~~~~~~ 150 (237)
....-+++.++++.|+.+|+++..+|........ .+.++.+|+.- . | +..+ .. +..-..
T Consensus 79 ~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft 158 (252)
T PF11019_consen 79 MELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFT 158 (252)
T ss_pred eEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEe
Confidence 3456778999999999999999999987755433 33344455421 0 0 0000 00 000112
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHH----cCCeEEEEcCCCC
Q 026543 151 QGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKN----AGMSVVMVPDPRL 204 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~----~G~~~i~v~~~~~ 204 (237)
.+-++..++..++.+.| ..|+.+|||+|+..++..... .|+..+++.....
T Consensus 159 ~~~~KG~~L~~fL~~~~---~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~~ 213 (252)
T PF11019_consen 159 GGQDKGEVLKYFLDKIN---QSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTGA 213 (252)
T ss_pred CCCccHHHHHHHHHHcC---CCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcch
Confidence 34567899999999999 999999999999988876554 5888888876544
No 155
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.52 E-value=2.8e-07 Score=79.52 Aligned_cols=104 Identities=15% Similarity=0.099 Sum_probs=79.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.++.|++++.++.|++.|+++.++|+ +.......+.+.+|+.++ ++. -.|+-...+.+.++ -.
T Consensus 440 Dp~R~~a~e~I~~Lr~~GI~vvMiTG-Dn~~TA~aIA~elGI~~v----~A~---------~~PedK~~iV~~lQ---~~ 502 (673)
T PRK14010 440 DVIKDGLVERFRELREMGIETVMCTG-DNELTAATIAKEAGVDRF----VAE---------CKPEDKINVIREEQ---AK 502 (673)
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEECC-CCHHHHHHHHHHcCCceE----EcC---------CCHHHHHHHHHHHH---hC
Confidence 47899999999999999999999998 555566678888888542 221 14666677777776 55
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhh
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLL 216 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~ 216 (237)
.+-+.|+||+.||..+.++|. ++++++...+..+..+|.+.
T Consensus 503 G~~VaMtGDGvNDAPALa~AD---VGIAMgsGTdvAkeAADiVL 543 (673)
T PRK14010 503 GHIVAMTGDGTNDAPALAEAN---VGLAMNSGTMSAKEAANLID 543 (673)
T ss_pred CCEEEEECCChhhHHHHHhCC---EEEEeCCCCHHHHHhCCEEE
Confidence 567999999999999999999 77777755544455555543
No 156
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.49 E-value=3e-07 Score=79.58 Aligned_cols=102 Identities=20% Similarity=0.187 Sum_probs=77.0
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.++.|++++.++.|++.|+++.++|+ +.......+.+.+|+++++..+. |+-.....+++. -.
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTG-Dn~~~A~~iA~~lGId~v~Aell-------------PedK~~~V~~l~---~~ 598 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTG-DNRRTAEAIAKELGIDEVRAELL-------------PEDKAEIVRELQ---AE 598 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHHcChHhheccCC-------------cHHHHHHHHHHH---hc
Confidence 67899999999999999999999998 55566667888899866544443 333455666666 45
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhh
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQ 214 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~ 214 (237)
...+.||||+.||..+...+. +++..|.........+|.
T Consensus 599 g~~VamVGDGINDAPALA~Ad---VGiAmG~GtDvA~eaADv 637 (713)
T COG2217 599 GRKVAMVGDGINDAPALAAAD---VGIAMGSGTDVAIEAADV 637 (713)
T ss_pred CCEEEEEeCCchhHHHHhhcC---eeEeecCCcHHHHHhCCE
Confidence 579999999999999999998 667776654333444444
No 157
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.48 E-value=1.2e-05 Score=62.04 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 152 GKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 152 ~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
..+|..+.+.+.+.+.... .+-.++.+|||+||+.|.+.+.++++ |..+..
T Consensus 206 ~~dKg~A~~~L~~~y~~~~-~~~~tiaLGDspND~~mLe~~D~~vv-i~~~~~ 256 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHL-GPIKALGIGCSPPDLAFLRWSEQKVV-LPSPIA 256 (302)
T ss_pred CCCHHHHHHHHHHHHHhcc-CCceEEEecCChhhHHHHHhCCeeEE-ecCCCC
Confidence 4467889999999887211 24489999999999999999998755 444433
No 158
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.48 E-value=6.1e-07 Score=79.11 Aligned_cols=101 Identities=17% Similarity=0.072 Sum_probs=71.9
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.+++|++.+.++.|++.|++++++|+ +.......+.+.+|+..+ .+ . .|+-...++++++ -
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTG-d~~~~a~~ia~~lgi~~~------~~--~------~p~~K~~~v~~l~---~- 627 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTG-DNPRAAAAIAGELGIDFR------AG--L------LPEDKVKAVTELN---Q- 627 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcC-CCHHHHHHHHHHcCCCee------cC--C------CHHHHHHHHHHHh---c-
Confidence 57899999999999999999999999 444555577888887421 11 1 1233444666666 3
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhh
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQL 215 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~ 215 (237)
+.+++||||+.||..+++.++ ++|+.+.........+|.+
T Consensus 628 ~~~v~mvGDgiNDapAl~~A~---vgia~g~~~~~a~~~adiv 667 (741)
T PRK11033 628 HAPLAMVGDGINDAPAMKAAS---IGIAMGSGTDVALETADAA 667 (741)
T ss_pred CCCEEEEECCHHhHHHHHhCC---eeEEecCCCHHHHHhCCEE
Confidence 368999999999999999999 6666665533333334443
No 159
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.48 E-value=3.5e-06 Score=64.17 Aligned_cols=107 Identities=11% Similarity=0.165 Sum_probs=61.7
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhH--HHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARH--FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGG 169 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~--~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~ 169 (237)
..++.|++.++.+.++++|++|+++||+.... .....++..|+..+ +..+-... .....+..........+++-
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~-~~LiLR~~-~D~~~~~av~yKs~~R~~li-- 218 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTW-EKLILKDP-QDNSAENAVEYKTAARAKLI-- 218 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCc-ceeeecCC-CCCccchhHHHHHHHHHHHH--
Confidence 47799999999999999999999999987543 23344555566544 33333220 11112222222222222222
Q ss_pred CCC-CCcEEEEecCHHHHHHHHHcCCeEEEEcCCC
Q 026543 170 PID-SQEILVFEDAPSGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 170 ~~~-~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~ 203 (237)
-+ ..=+..|||..+|+.+....+-++..++.+.
T Consensus 219 -~eGYrIv~~iGDq~sDl~G~~~g~~RtFKLPNP~ 252 (275)
T TIGR01680 219 -QEGYNIVGIIGDQWNDLKGEHRGAIRSFKLPNPC 252 (275)
T ss_pred -HcCceEEEEECCCHHhccCCCccCcceecCCCcc
Confidence 11 2345778999999955442234566665543
No 160
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.47 E-value=3.7e-07 Score=78.91 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=77.9
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.++.|++++.++.|++.|+++.++|+ +.......+.+.+|+++ +++.- .|+-...+.++++ -.
T Consensus 444 D~~R~~~~eai~~Lr~~GI~vvMiTG-Dn~~TA~aIA~elGId~----v~A~~---------~PedK~~iV~~lQ---~~ 506 (679)
T PRK01122 444 DIVKPGIKERFAELRKMGIKTVMITG-DNPLTAAAIAAEAGVDD----FLAEA---------TPEDKLALIRQEQ---AE 506 (679)
T ss_pred ccCchhHHHHHHHHHHCCCeEEEECC-CCHHHHHHHHHHcCCcE----EEccC---------CHHHHHHHHHHHH---Hc
Confidence 46799999999999999999999998 55556667888888854 22221 3566677777776 55
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhh
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLL 216 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~ 216 (237)
.+-+.|+||+.||..+.+.|. ++++++...+..+..+|.++
T Consensus 507 G~~VaMtGDGvNDAPALa~AD---VGIAMgsGTdvAkeAADiVL 547 (679)
T PRK01122 507 GRLVAMTGDGTNDAPALAQAD---VGVAMNSGTQAAKEAGNMVD 547 (679)
T ss_pred CCeEEEECCCcchHHHHHhCC---EeEEeCCCCHHHHHhCCEEE
Confidence 567999999999999999999 66777655444445555443
No 161
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.43 E-value=4.7e-07 Score=78.16 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=73.5
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.++.|++++.++.|++.|++++++|+ +.......+.+.+|+.++ ++.- .|+-...+++++. -.
T Consensus 445 D~~Rp~a~eaI~~l~~~Gi~v~miTG-D~~~ta~~iA~~lGI~~v----~a~~---------~PedK~~~v~~lq---~~ 507 (675)
T TIGR01497 445 DIVKGGIKERFAQLRKMGIKTIMITG-DNRLTAAAIAAEAGVDDF----IAEA---------TPEDKIALIRQEQ---AE 507 (675)
T ss_pred ccchhHHHHHHHHHHHCCCEEEEEcC-CCHHHHHHHHHHcCCCEE----EcCC---------CHHHHHHHHHHHH---Hc
Confidence 47899999999999999999999998 444555577888887543 3221 2444555555555 44
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhh
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQL 215 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~ 215 (237)
...+.|+||+.||..+.+.++ ++++.+...+..+..+|.+
T Consensus 508 g~~VamvGDG~NDapAL~~Ad---vGiAm~~gt~~akeaadiv 547 (675)
T TIGR01497 508 GKLVAMTGDGTNDAPALAQAD---VGVAMNSGTQAAKEAANMV 547 (675)
T ss_pred CCeEEEECCCcchHHHHHhCC---EeEEeCCCCHHHHHhCCEE
Confidence 557999999999999999999 5565554443334444443
No 162
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.40 E-value=6.7e-07 Score=68.57 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcC
Q 026543 151 QGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~ 201 (237)
..--|..+++.++++++ +++++++++|||.||+.|. ..+...|.|..
T Consensus 162 ~~a~K~~Al~~L~~~~~---~~~~~vl~aGDSgND~~mL-~~~~~~vvV~N 208 (247)
T PF05116_consen 162 KGASKGAALRYLMERWG---IPPEQVLVAGDSGNDLEML-EGGDHGVVVGN 208 (247)
T ss_dssp TT-SHHHHHHHHHHHHT-----GGGEEEEESSGGGHHHH-CCSSEEEE-TT
T ss_pred CCCCHHHHHHHHHHHhC---CCHHHEEEEeCCCCcHHHH-cCcCCEEEEcC
Confidence 34446899999999999 9999999999999999999 66667777754
No 163
>PTZ00174 phosphomannomutase; Provisional
Probab=98.39 E-value=5.2e-08 Score=74.81 Aligned_cols=44 Identities=16% Similarity=0.094 Sum_probs=35.6
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcEEEEec----CHHHHHHHHHcCCeEEEEc
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEILVFED----APSGVLAAKNAGMSVVMVP 200 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD----~~~Di~~a~~~G~~~i~v~ 200 (237)
..+..|..++++++++. +++++||| +.||++|.+.++...+.|.
T Consensus 184 ~~gvsKg~al~~L~~~~-------~eviafGD~~~~~~NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 184 PKGWDKTYCLRHLENDF-------KEIHFFGDKTFEGGNDYEIYNDPRTIGHSVK 231 (247)
T ss_pred eCCCcHHHHHHHHHhhh-------hhEEEEcccCCCCCCcHhhhhcCCCceEEeC
Confidence 34556678888887773 59999999 8899999999888777776
No 164
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.36 E-value=7e-07 Score=80.87 Aligned_cols=118 Identities=15% Similarity=0.086 Sum_probs=81.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCC--------------CccCCCCCHHH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDP--------------EVKQGKPSPDI 158 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~--------------~~~~~kp~~~~ 158 (237)
.++.+++.+.++.|++.|++++++|+ +.......+.+.+|+...-..++.+.+- ..-...-.|+-
T Consensus 578 Dplr~~~~~aI~~l~~aGI~v~miTG-D~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~ 656 (941)
T TIGR01517 578 DPLRPGVREAVQECQRAGITVRMVTG-DNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLD 656 (941)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEECC-CChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHH
Confidence 37889999999999999999999998 5555565778888875322233333200 01122345666
Q ss_pred HHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCC-CCCcccccchhhhhh
Q 026543 159 FLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDP-RLDSSYHSNADQLLS 217 (237)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~-~~~~~~~~~~~~~~~ 217 (237)
...+.+.+. -....+.|+||+.||..+.+.|. |+|+.+ ...+..+..+|.++.
T Consensus 657 K~~iV~~lq---~~g~vVam~GDGvNDapALk~Ad---VGIAmg~~gtdvAk~aADivL~ 710 (941)
T TIGR01517 657 KQLLVLMLK---DMGEVVAVTGDGTNDAPALKLAD---VGFSMGISGTEVAKEASDIILL 710 (941)
T ss_pred HHHHHHHHH---HCCCEEEEECCCCchHHHHHhCC---cceecCCCccHHHHHhCCEEEe
Confidence 677777776 45568999999999999999999 666666 344444555666654
No 165
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.34 E-value=9.8e-07 Score=79.15 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=80.1
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCC--------------CccCCCCCHHH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDP--------------EVKQGKPSPDI 158 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~--------------~~~~~kp~~~~ 158 (237)
.++.|++++.++.|++.|+++.++|+ +.......+.+.+|+.. +.++.+.+- ..-...-.|+-
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTG-D~~~tA~aIA~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~ 590 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTG-DNEIVTARICQEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQ 590 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcC-CCHHHHHHHHHHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHH
Confidence 46789999999999999999999998 55556667888888852 123332200 01112235666
Q ss_pred HHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhh
Q 026543 159 FLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLL 216 (237)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~ 216 (237)
...+.+.+. -....+.|+||+.||..+.+.|. ++++.+.+.+..+..+|.++
T Consensus 591 K~~iV~~lq---~~G~vVam~GDGvNDapALk~Ad---VGIAmg~gtdvAk~aADiVL 642 (867)
T TIGR01524 591 KSRIIGLLK---KAGHTVGFLGDGINDAPALRKAD---VGISVDTAADIAKEASDIIL 642 (867)
T ss_pred HHHHHHHHH---hCCCEEEEECCCcccHHHHHhCC---EEEEeCCccHHHHHhCCEEE
Confidence 666667666 45567999999999999999999 66666655444455566554
No 166
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.34 E-value=9.5e-07 Score=79.44 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=82.4
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCC--------------CccCCCCCHHH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDP--------------EVKQGKPSPDI 158 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~--------------~~~~~kp~~~~ 158 (237)
.++.|++++.++.|++.|+++.++|+ +.......+.+.+|+.. +.++.+.+- ..-...-.|+-
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTG-D~~~tA~aIA~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~ 625 (903)
T PRK15122 549 DPPKESAAPAIAALRENGVAVKVLTG-DNPIVTAKICREVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQ 625 (903)
T ss_pred CccHHHHHHHHHHHHHCCCeEEEECC-CCHHHHHHHHHHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHH
Confidence 47889999999999999999999998 55556667888888842 223333200 01122335677
Q ss_pred HHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhh
Q 026543 159 FLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLL 216 (237)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~ 216 (237)
...+.+.+. -..+.+.|+||+.||..+.+.|. |+|+.+...+..+..+|.++
T Consensus 626 K~~iV~~Lq---~~G~vVamtGDGvNDaPALk~AD---VGIAmg~gtdvAkeaADiVL 677 (903)
T PRK15122 626 KSRVLKALQ---ANGHTVGFLGDGINDAPALRDAD---VGISVDSGADIAKESADIIL 677 (903)
T ss_pred HHHHHHHHH---hCCCEEEEECCCchhHHHHHhCC---EEEEeCcccHHHHHhcCEEE
Confidence 777777777 56678999999999999999999 66766655444456666655
No 167
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.32 E-value=9.1e-07 Score=79.50 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=82.1
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCC--------------CccCCCCCHHH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDP--------------EVKQGKPSPDI 158 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~--------------~~~~~kp~~~~ 158 (237)
.++.|++.+.++.|++.|+++.++|+ +.......+.+.+|+.. +.++.+.+- ..-...-.|+-
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTG-D~~~tA~~IA~~lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~ 625 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTG-DSELVAAKVCHEVGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMH 625 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcC-CCHHHHHHHHHHcCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHH
Confidence 46789999999999999999999998 55556667888888842 233333200 01122345667
Q ss_pred HHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhh
Q 026543 159 FLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLL 216 (237)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~ 216 (237)
...+.+.+. -....+.|+||+.||..+.+.|. |+|+.+...+..+..+|.++
T Consensus 626 K~~IV~~Lq---~~G~vVam~GDGvNDaPALk~AD---VGIAmg~gtdvAkeaADiVL 677 (902)
T PRK10517 626 KERIVTLLK---REGHVVGFMGDGINDAPALRAAD---IGISVDGAVDIAREAADIIL 677 (902)
T ss_pred HHHHHHHHH---HCCCEEEEECCCcchHHHHHhCC---EEEEeCCcCHHHHHhCCEEE
Confidence 777777776 55667999999999999999999 66776655444455666654
No 168
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.30 E-value=4.5e-06 Score=68.83 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=69.8
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhh-h--------hhhhhcceeeeCCC---------------CC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKH-R--------ELFSLMHHVVRGDD---------------PE 148 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~-~--------gl~~~f~~~~~~~~---------------~~ 148 (237)
+...|.+..+|+.|+++|.++.++||+....+.. .++. + .+.++||.|++... .+
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~-~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~ 260 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNA-VMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTE 260 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHH-HHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETT
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhh-hhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECC
Confidence 4567899999999999999999999988776653 3443 2 46789999986530 01
Q ss_pred ccC---------CCC----CHHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHHc-CCeEEEEcCCC
Q 026543 149 VKQ---------GKP----SPDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKNA-GMSVVMVPDPR 203 (237)
Q Consensus 149 ~~~---------~kp----~~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~~-G~~~i~v~~~~ 203 (237)
.+. .++ .......+.+.+| ...++++||||+. .||...+.. ||.|+.|-...
T Consensus 261 ~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~---~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~EL 327 (448)
T PF05761_consen 261 TGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLG---WRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPEL 327 (448)
T ss_dssp TSSEECS---SS--TC-EEEE--HHHHHHHCT-----GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTH
T ss_pred CCccccccccccccCCCEeecCCHHHHHHHHc---cCCCeEEEECCchhhhhhhhccccceEEEEEehhh
Confidence 111 011 1123667788888 8999999999999 999988887 99999996543
No 169
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.30 E-value=9.4e-07 Score=78.17 Aligned_cols=113 Identities=14% Similarity=0.056 Sum_probs=77.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCC----C----------------ccCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDP----E----------------VKQG 152 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~----~----------------~~~~ 152 (237)
.++.|++++.++.|++.|+++.++|+ +.......+.+.+|+... ++.++.. + ....
T Consensus 441 Dp~R~~a~~aI~~l~~aGI~v~miTG-D~~~tA~~IA~~lGI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfA 516 (755)
T TIGR01647 441 DPPRHDTKETIERARHLGVEVKMVTG-DHLAIAKETARRLGLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFA 516 (755)
T ss_pred CCChhhHHHHHHHHHHCCCeEEEECC-CCHHHHHHHHHHcCCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEE
Confidence 47899999999999999999999998 554556677888888531 1111100 0 0122
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhh
Q 026543 153 KPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQL 215 (237)
Q Consensus 153 kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~ 215 (237)
+-.|+-...+.+.+. -....+.|+||+.||..+.+.|. ++++.+...+..+..+|.+
T Consensus 517 r~~Pe~K~~iV~~lq---~~G~~VamvGDGvNDapAL~~Ad---VGIAm~~gtdvAkeaADiv 573 (755)
T TIGR01647 517 EVFPEHKYEIVEILQ---KRGHLVGMTGDGVNDAPALKKAD---VGIAVAGATDAARSAADIV 573 (755)
T ss_pred ecCHHHHHHHHHHHH---hcCCEEEEEcCCcccHHHHHhCC---eeEEecCCcHHHHHhCCEE
Confidence 335666777777776 56678999999999999999999 5555554433334444443
No 170
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=98.24 E-value=2e-06 Score=78.49 Aligned_cols=116 Identities=13% Similarity=0.071 Sum_probs=80.8
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhh----------cceeeeCCCCCc-------------
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSL----------MHHVVRGDDPEV------------- 149 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~----------f~~~~~~~~~~~------------- 149 (237)
.++.+++.+.++.|++.|++++++|+ +.......+.+.+|+... -+.++.|. +.
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTG-D~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~--~l~~l~~~~l~~~~~ 721 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTG-DFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGS--QFDALSDEEVDDLKA 721 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHcCCCCccccccccccccceeeehH--HhhhcCHHHHHHHhh
Confidence 47899999999999999999999998 444455567888888432 12344443 11
Q ss_pred ---cCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCC-CCCcccccchhhhhh
Q 026543 150 ---KQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDP-RLDSSYHSNADQLLS 217 (237)
Q Consensus 150 ---~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~-~~~~~~~~~~~~~~~ 217 (237)
-...-.|+-...+.+.+. -....+.|+||+.||..+.+.|. ++|++| ...+..+..+|.++.
T Consensus 722 ~~~V~ar~sP~~K~~iV~~lq---~~g~~Vam~GDGvNDapaLk~Ad---VGIAmg~~gt~vak~aADivl~ 787 (1053)
T TIGR01523 722 LCLVIARCAPQTKVKMIEALH---RRKAFCAMTGDGVNDSPSLKMAN---VGIAMGINGSDVAKDASDIVLS 787 (1053)
T ss_pred cCeEEEecCHHHHHHHHHHHH---hcCCeeEEeCCCcchHHHHHhCC---ccEecCCCccHHHHHhcCEEEe
Confidence 123345666667777776 55567999999999999999999 666665 233334556666653
No 171
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=3.5e-05 Score=53.77 Aligned_cols=112 Identities=22% Similarity=0.232 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHH--HHHhhhhhhhhhcceeeeCCCCCcc
Q 026543 73 LSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFE--LKTQKHRELFSLMHHVVRGDDPEVK 150 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~--~~~~~~~gl~~~f~~~~~~~~~~~~ 150 (237)
.+.+++.+++++......++.....++...|..++++ .+++.+|........ ..++..- ...+|.+.-.. .
T Consensus 51 i~~ee~~k~~e~~ea~l~ke~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q--~ih~~~l~i~g----~ 123 (194)
T COG5663 51 ITTEEFWKWMEQTEAWLYKEALLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQ--NIHYDHLEIVG----L 123 (194)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHh--ccchhhhhhhc----c
Confidence 4456666666555444444566778888899999988 577778774443322 1122111 11233322111 1
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCC
Q 026543 151 QGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~ 204 (237)
..| -...+.++ ++ +++.|+. |-.+.|+++|++++.+.+..+
T Consensus 124 h~K------V~~vrth~---id----lf~ed~~~na~~iAk~~~~~vilins~yn 165 (194)
T COG5663 124 HHK------VEAVRTHN---ID----LFFEDSHDNAGQIAKNAGIPVILINSPYN 165 (194)
T ss_pred ccc------chhhHhhc---cC----ccccccCchHHHHHHhcCCcEEEecCccc
Confidence 122 22455666 55 8899998 888889999999999998776
No 172
>PLN02645 phosphoglycolate phosphatase
Probab=98.06 E-value=4.2e-05 Score=60.83 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=67.4
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhH---HHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARH---FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~---~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
++||+.++++.|+++|++++++||+.... ... .++.+|+...++.++++. ......+++.+ .
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~-~l~~lGi~~~~~~I~ts~-----------~~~~~~l~~~~---~ 109 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGK-KFESLGLNVTEEEIFSSS-----------FAAAAYLKSIN---F 109 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH-HHHHCCCCCChhhEeehH-----------HHHHHHHHhhc---c
Confidence 67999999999999999999999977332 232 245677776667776554 24566677766 6
Q ss_pred CCCcEEEEecCHHHHHHHHHcCCeEEE
Q 026543 172 DSQEILVFEDAPSGVLAAKNAGMSVVM 198 (237)
Q Consensus 172 ~~~~~~~igD~~~Di~~a~~~G~~~i~ 198 (237)
.....++++++..+.+.++.+|+..+.
T Consensus 110 ~~~~~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 110 PKDKKVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred CCCCEEEEEcCHHHHHHHHHCCCEEec
Confidence 555678898999999999999987654
No 173
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.04 E-value=3.9e-05 Score=56.89 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=55.1
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhH-H--HHHHhhhhhhhhhcc-eeeeCCCCCccCCCCCHHHHHHHHHHcC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARH-F--ELKTQKHRELFSLMH-HVVRGDDPEVKQGKPSPDIFLAAAKRFE 167 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~-~--~~~~~~~~gl~~~f~-~~~~~~~~~~~~~kp~~~~~~~~l~~~~ 167 (237)
...+.||+.+++...-++|..|+.+||+..+. . ...-++..|+..... .++.-. ..+++..-++.+-+.+
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk-----~~k~Ke~R~~~v~k~~- 193 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKK-----DKKSKEVRRQAVEKDY- 193 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEee-----CCCcHHHHHHHHhhcc-
Confidence 36799999999999999999999999987765 1 222355556655433 222112 2344444444444433
Q ss_pred CCCCCCCcEEEEecCHHHHH
Q 026543 168 GGPIDSQEILVFEDAPSGVL 187 (237)
Q Consensus 168 ~~~~~~~~~~~igD~~~Di~ 187 (237)
+-++.|||+..|.-
T Consensus 194 ------~iVm~vGDNl~DF~ 207 (274)
T COG2503 194 ------KIVMLVGDNLDDFG 207 (274)
T ss_pred ------ceeeEecCchhhhc
Confidence 46899999997753
No 174
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.02 E-value=1.2e-05 Score=72.64 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=75.0
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhc--ceeeeCCC--------------CCccCCCCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLM--HHVVRGDD--------------PEVKQGKPS 155 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f--~~~~~~~~--------------~~~~~~kp~ 155 (237)
..++.+++++.++.|+++|++++++|+ +.......+.+.+|+..-- +.++.|.. ......+-.
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTG-D~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvs 623 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITG-DHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVS 623 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECC-CCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcC
Confidence 368999999999999999999999998 5556666788888865543 23554430 001223446
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeE
Q 026543 156 PDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSV 196 (237)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~ 196 (237)
|+-...+.+.+. -...-+.|.||+.||+.|.+.|.+..
T Consensus 624 P~qK~~IV~~lq---~~g~vVamtGDGvNDapALk~ADVGI 661 (917)
T COG0474 624 PEQKARIVEALQ---KSGHVVAMTGDGVNDAPALKAADVGI 661 (917)
T ss_pred HHHHHHHHHHHH---hCCCEEEEeCCCchhHHHHHhcCccE
Confidence 667777777776 55678999999999999999999543
No 175
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=98.02 E-value=1e-05 Score=69.78 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=81.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcc----eeeeCCCCCc----------------cCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMH----HVVRGDDPEV----------------KQG 152 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~----~~~~~~~~~~----------------~~~ 152 (237)
.+|++++++.++.|++.|++|.++|+ +.......+.+..|+...-+ ..++|. +. -..
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITG-D~~~TA~AI~r~iGi~~~~ed~~~~~~TG~--efD~ls~~~~~~~~~~~~vFa 659 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITG-DNKETAEAIAREIGIFSEDEDVSSMALTGS--EFDDLSDEELDDAVRRVLVFA 659 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcC-CCHHHHHHHHHHhCCCcCCccccccccchh--hhhcCCHHHHHHHhhcceEEE
Confidence 57899999999999999999999998 55556667888888755444 334443 11 012
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCC-CCCcccccchhhh
Q 026543 153 KPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDP-RLDSSYHSNADQL 215 (237)
Q Consensus 153 kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~-~~~~~~~~~~~~~ 215 (237)
+-.|....++.+.++ -..+=+.|-||+.||..+.+.|. |+|++| ......+..+|.+
T Consensus 660 R~~P~HK~kIVeaLq---~~geivAMTGDGVNDApALK~Ad---IGIAMG~~GTdVaKeAsDMV 717 (972)
T KOG0202|consen 660 RAEPQHKLKIVEALQ---SRGEVVAMTGDGVNDAPALKKAD---IGIAMGISGTDVAKEASDMV 717 (972)
T ss_pred ecCchhHHHHHHHHH---hcCCEEEecCCCccchhhhhhcc---cceeecCCccHhhHhhhhcE
Confidence 335666777777777 56677889999999999999999 777777 3333334444443
No 176
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.00 E-value=3e-06 Score=64.96 Aligned_cols=66 Identities=11% Similarity=-0.110 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHc-------CCeEEEEcCCCCCcccccchhhhhhhhcccCCCC
Q 026543 154 PSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNA-------GMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~-------G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~l 226 (237)
.|...+.+++++++ ++++++++|||+.+|+.+++.+ |..++.|..+. ....+++++++..++...|
T Consensus 167 ~Kg~a~~~~~~~~~---~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g~----~~~~A~~~~~~~~~v~~~L 239 (244)
T TIGR00685 167 NKGEIVKRLLWHQP---GSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSGS----KKTVAKFHLTGPQQVLEFL 239 (244)
T ss_pred CHHHHHHHHHHhcc---cCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecCC----cCCCceEeCCCHHHHHHHH
Confidence 34689999999999 9999999999999999999999 66667675342 3567888888888876554
No 177
>PLN02423 phosphomannomutase
Probab=98.00 E-value=8.6e-07 Score=67.92 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=35.5
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcEEEEec----CHHHHHHHHHcCCeEEEEcCC
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEILVFED----APSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD----~~~Di~~a~~~G~~~i~v~~~ 202 (237)
..+..|..+++.++ +++++++||| +.||++|.+.-|+.++-|..+
T Consensus 185 ~~gvnKg~al~~L~--------~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~ 233 (245)
T PLN02423 185 PQGWDKTYCLQFLE--------DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSP 233 (245)
T ss_pred eCCCCHHHHHHHhc--------CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCH
Confidence 34455566666665 5789999999 689999999999998888664
No 178
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.95 E-value=1.7e-05 Score=72.47 Aligned_cols=119 Identities=19% Similarity=0.152 Sum_probs=78.6
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhc------------------------ceeeeCCCC-
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLM------------------------HHVVRGDDP- 147 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f------------------------~~~~~~~~~- 147 (237)
.++.+++.+.++.|+++|++++++|+..... ...+.+.+|+...- ..++.|..-
T Consensus 567 Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~t-a~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~ 645 (997)
T TIGR01106 567 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLK 645 (997)
T ss_pred CCChHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhh
Confidence 3678999999999999999999999965554 44566766763210 123333200
Q ss_pred ---------------CccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC-Ccccccc
Q 026543 148 ---------------EVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL-DSSYHSN 211 (237)
Q Consensus 148 ---------------~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~-~~~~~~~ 211 (237)
..-..+-.|+-...+.+.+. -...-+.|+||+.||+.|.+.|. ++|+.|.. .+..+..
T Consensus 646 ~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq---~~g~vv~~~GDG~ND~paLk~Ad---VGiamg~~G~~vak~a 719 (997)
T TIGR01106 646 DMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQ---RQGAIVAVTGDGVNDSPALKKAD---IGVAMGIAGSDVSKQA 719 (997)
T ss_pred hCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHH---HCCCEEEEECCCcccHHHHhhCC---cceecCCcccHHHHHh
Confidence 00223345666666666665 44567999999999999999999 66766643 3334555
Q ss_pred hhhhhhh
Q 026543 212 ADQLLSS 218 (237)
Q Consensus 212 ~~~~~~~ 218 (237)
+|+++.+
T Consensus 720 ADivL~d 726 (997)
T TIGR01106 720 ADMILLD 726 (997)
T ss_pred hceEEec
Confidence 6666544
No 179
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.94 E-value=2.6e-05 Score=67.97 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=64.5
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
..+.|++...+..|++.|++++++|+ +.........+..| ++.+++.- + |+-.....+++. -.
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTG-Dn~~aA~svA~~VG----i~~V~aev-------~--P~~K~~~Ik~lq---~~ 784 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTG-DNDAAARSVAQQVG----IDNVYAEV-------L--PEQKAEKIKEIQ---KN 784 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcC-CCHHHHHHHHHhhC----cceEEecc-------C--chhhHHHHHHHH---hc
Confidence 57899999999999999999999998 55555666777777 56666443 2 223344555555 45
Q ss_pred CCcEEEEecCHHHHHHHHHcCCe
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~ 195 (237)
...+.||||+.||-.+...+.+.
T Consensus 785 ~~~VaMVGDGINDaPALA~AdVG 807 (951)
T KOG0207|consen 785 GGPVAMVGDGINDAPALAQADVG 807 (951)
T ss_pred CCcEEEEeCCCCccHHHHhhccc
Confidence 56899999999999999988733
No 180
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.85 E-value=0.00016 Score=55.16 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=64.8
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCC---------------------------C
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDD---------------------------P 147 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~---------------------------~ 147 (237)
..|.+.+.|..|++.|..+++=|-|+.+++... ++.+++.++||.++++.. .
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~s-l~~~~L~~~Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv 221 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHS-LKELKLEGYFDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDV 221 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHH-HHHhCCccccEEEEeCCccCCcCCccceeecccceEEeccceEEeC
Confidence 455666788899999999999999999988864 677899999999997640 0
Q ss_pred Ccc--CCCCCHHHHHHHHHHcCCCCCCC-CcEEEEecCH-HHH
Q 026543 148 EVK--QGKPSPDIFLAAAKRFEGGPIDS-QEILVFEDAP-SGV 186 (237)
Q Consensus 148 ~~~--~~kp~~~~~~~~l~~~~~~~~~~-~~~~~igD~~-~Di 186 (237)
+.. -+| +|....+.|++.| +.. +.+..|+|=. ||+
T Consensus 222 ~~~~~LPK-SPrVVL~yL~k~g---vny~KtiTLVDDL~~Nn~ 260 (297)
T PF05152_consen 222 TNVNNLPK-SPRVVLWYLRKKG---VNYFKTITLVDDLKSNNY 260 (297)
T ss_pred CcCCCCCC-CCeehHHHHHHcC---CceeeeEEEeccCcccCc
Confidence 000 122 5678889999999 775 5567778776 554
No 181
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.83 E-value=2.5e-05 Score=58.19 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=41.6
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEE
Q 026543 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVV 197 (237)
Q Consensus 149 ~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i 197 (237)
.+.+.+|+.+++.++++++ ++++++++|||+.||+.+++.+|+..+
T Consensus 158 ~p~~~~K~~~~~~~~~~~~---~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 158 LPAGVDKGSALQALLKELN---GKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred ecCCCChHHHHHHHHHHhC---CCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 3457888999999999999 999999999999999999999997654
No 182
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.81 E-value=5.1e-05 Score=53.84 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=61.8
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh-hhc-ceeeeCCCCCccCCCCCHHHHHHHH-HHcCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF-SLM-HHVVRGDDPEVKQGKPSPDIFLAAA-KRFEG 168 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~-~~f-~~~~~~~~~~~~~~kp~~~~~~~~l-~~~~~ 168 (237)
.+.++||+.++|+.+++. +.++|+|++...+.. .+++.++.. .+| +.+++.+ +.. .+ +.+-+ .-++
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~-~vl~~ldp~~~~F~~ri~~rd--~~~--~~----~~KdL~~i~~- 124 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQ-AIAKLIDPDGKYFGDRIISRD--ESG--SP----HTKSLLRLFP- 124 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHH-HHHHHhCcCCCeeccEEEEec--cCC--CC----ccccHHHHcC-
Confidence 377899999999999976 999999998777655 578888877 478 6777766 322 11 11223 3357
Q ss_pred CCCCCCcEEEEecCHHHHHHH
Q 026543 169 GPIDSQEILVFEDAPSGVLAA 189 (237)
Q Consensus 169 ~~~~~~~~~~igD~~~Di~~a 189 (237)
.+.+.+++|+|++.-...-
T Consensus 125 --~d~~~vvivDd~~~~~~~~ 143 (156)
T TIGR02250 125 --ADESMVVIIDDREDVWPWH 143 (156)
T ss_pred --CCcccEEEEeCCHHHhhcC
Confidence 7889999999999544443
No 183
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.76 E-value=5.2e-05 Score=69.88 Aligned_cols=128 Identities=17% Similarity=0.154 Sum_probs=77.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcc---------------------------------
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMH--------------------------------- 139 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~--------------------------------- 139 (237)
.++.+++.+.++.|++.|++++++|+... .....+.+..|+...-.
T Consensus 630 D~lq~~v~etI~~L~~AGIkv~mlTGD~~-~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 708 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAGIKIWVLTGDKV-ETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNN 708 (1057)
T ss_pred hhhhhccHHHHHHHHHCCCeEEEEcCCcH-HHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhh
Confidence 57899999999999999999999998443 34434444444422110
Q ss_pred --------eeeeCCC-------------------C-CccCCCCCHHHHHHHHHHcCCCCCC-CCcEEEEecCHHHHHHHH
Q 026543 140 --------HVVRGDD-------------------P-EVKQGKPSPDIFLAAAKRFEGGPID-SQEILVFEDAPSGVLAAK 190 (237)
Q Consensus 140 --------~~~~~~~-------------------~-~~~~~kp~~~~~~~~l~~~~~~~~~-~~~~~~igD~~~Di~~a~ 190 (237)
.++.|+. . .....+-.|.-...+.+.+. -. ...++++||+.||+.|.+
T Consensus 709 ~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk---~~~~~~vl~iGDG~ND~~mlk 785 (1057)
T TIGR01652 709 LGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVK---KSTGKTTLAIGDGANDVSMIQ 785 (1057)
T ss_pred hccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHH---hcCCCeEEEEeCCCccHHHHh
Confidence 1222220 0 00112223333444444443 22 467999999999999999
Q ss_pred HcCCeEEEEcCCCCCcccccchhhhhhhhcccCCCC
Q 026543 191 NAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 191 ~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~l 226 (237)
.|.+.. ++.... .......+|+++.+|..+...+
T Consensus 786 ~AdVGI-gi~g~e-g~qA~~aaD~~i~~F~~L~~ll 819 (1057)
T TIGR01652 786 EADVGV-GISGKE-GMQAVMASDFAIGQFRFLTKLL 819 (1057)
T ss_pred hcCeee-EecChH-HHHHHHhhhhhhhhHHHHHHHH
Confidence 998442 333221 1123557899998888765443
No 184
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.67 E-value=0.00083 Score=47.27 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=55.0
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhH--HHHHHhhhh-----hhhhhcceeeeCCC-------CCccCCCCCHHHH
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARH--FELKTQKHR-----ELFSLMHHVVRGDD-------PEVKQGKPSPDIF 159 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~--~~~~~~~~~-----gl~~~f~~~~~~~~-------~~~~~~kp~~~~~ 159 (237)
...+|+.++++.+.++||++..+|.+.... ....++... ++.. ..++.+.+ -++. .++|+.|
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~--Gpv~~sP~~l~~al~rEvi--~~~p~~f 102 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPD--GPVLLSPDSLFSALHREVI--SKDPEEF 102 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCC--CCEEECCcchhhhhhcccc--ccChHHH
Confidence 367899999999999999999999876433 233444433 2211 12222210 0111 2234333
Q ss_pred HH-HHHHcCCCCCC-CCc--EEEEecCHHHHHHHHHcCCe
Q 026543 160 LA-AAKRFEGGPID-SQE--ILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 160 ~~-~l~~~~~~~~~-~~~--~~~igD~~~Di~~a~~~G~~ 195 (237)
.. .|+.+.. ..+ ... ...+|++.+|+.+=+++|++
T Consensus 103 K~~~L~~l~~-~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 103 KIACLRDLRA-LFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHHH-hcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 32 3333320 011 122 34579999999999999986
No 185
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.62 E-value=0.00045 Score=46.92 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=24.6
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhH
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARH 123 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~ 123 (237)
.+.+++.+.++.++++|+.++++|++....
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 367778888899999999999999876553
No 186
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.62 E-value=0.00033 Score=64.67 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=34.2
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
.++.|++.+.++.|+++|++++++|+. .......+.+..|+.
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTGD-~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITGD-NPLTAVHVARECGIV 696 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECCC-CHHHHHHHHHHcCCC
Confidence 478999999999999999999999984 444555567777774
No 187
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=97.61 E-value=0.0063 Score=45.64 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=50.0
Q ss_pred hhhhhhcc--eeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 132 RELFSLMH--HVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 132 ~gl~~~f~--~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
.+|..+|. .|+++- . .+ +...|+++.+++| -+...-++|||+...-.+|+..+|+++-|.....
T Consensus 196 y~L~~~f~ieNIYSa~--k--vG--K~~cFe~I~~Rfg---~p~~~f~~IGDG~eEe~aAk~l~wPFw~I~~h~D 261 (274)
T TIGR01658 196 FRLDTIFRIENVYSSI--K--VG--KLQCFKWIKERFG---HPKVRFCAIGDGWEECTAAQAMNWPFVKIDLHPD 261 (274)
T ss_pred hccCCccccccccchh--h--cc--hHHHHHHHHHHhC---CCCceEEEeCCChhHHHHHHhcCCCeEEeecCCC
Confidence 45666553 455444 2 23 4789999999999 7778899999999999999999999999977544
No 188
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.54 E-value=0.00031 Score=56.97 Aligned_cols=100 Identities=14% Similarity=0.041 Sum_probs=77.9
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhh-HHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLAR-HFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDS 173 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~-~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~ 173 (237)
+.....++.+.+.+++.+|.++|+-.-+ .+...++-..|.+..--.++.+. +....|-+...|..+++.-+ ++|
T Consensus 100 pn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~--e~rl~KnSg~LFk~Vlk~En---Vd~ 174 (635)
T COG5610 100 PNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSS--EFRLKKNSGNLFKAVLKLEN---VDP 174 (635)
T ss_pred ccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecc--eeehhcccchHHHHHHhhcC---CCh
Confidence 3445568899999999999999985432 23444555555544444566666 67778888899999999999 999
Q ss_pred CcEEEEecCH-HHHHHHHHcCCeEEEE
Q 026543 174 QEILVFEDAP-SGVLAAKNAGMSVVMV 199 (237)
Q Consensus 174 ~~~~~igD~~-~Di~~a~~~G~~~i~v 199 (237)
..++++||.. .|..++++.|+.|...
T Consensus 175 ~~w~H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 175 KKWIHCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred hheEEecCchhhhhcCccccchhHHHH
Confidence 9999999998 9999999999877654
No 189
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.48 E-value=0.0012 Score=48.54 Aligned_cols=95 Identities=9% Similarity=0.097 Sum_probs=55.5
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhh--cceeeeCCCC--------Ccc--CCCCCHHHHH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSL--MHHVVRGDDP--------EVK--QGKPSPDIFL 160 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~--f~~~~~~~~~--------~~~--~~kp~~~~~~ 160 (237)
....|++.+||+.+.+. +.++|.|.+...++. ..++.+++... +...+.-+.. ..+ .-|+ +.
T Consensus 44 ~~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~-~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~ 117 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYED-YDIVIWSATSMKWIE-IKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LG 117 (195)
T ss_pred EEeCCCHHHHHHHHHhC-CEEEEEecCCHHHHH-HHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cH
Confidence 45789999999999996 999999997776655 45555543211 1111100100 011 1222 22
Q ss_pred HHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCC
Q 026543 161 AAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGM 194 (237)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~ 194 (237)
.+-++++. ..+.+++++|+|++....+=-..|+
T Consensus 118 ~lw~~l~~-~~~~~ntiiVDd~p~~~~~~P~N~i 150 (195)
T TIGR02245 118 VIWALLPE-FYSMKNTIMFDDLRRNFLMNPQNGL 150 (195)
T ss_pred Hhhhhccc-CCCcccEEEEeCCHHHHhcCCCCcc
Confidence 23334540 0377999999999976655444563
No 190
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.00093 Score=51.55 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=54.8
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhH---HHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARH---FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGG 169 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~---~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~ 169 (237)
..++||+.++|+.|+++|.+++++||++... ...++...++++...+.++++. ......+++..
T Consensus 23 ~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~-----------~at~~~l~~~~-- 89 (269)
T COG0647 23 NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSG-----------DATADYLAKQK-- 89 (269)
T ss_pred CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHH-----------HHHHHHHHhhC--
Confidence 4589999999999999999999999986543 3334444355656667776554 22333333332
Q ss_pred CCCCCcEEEEecCHHHHHHHHHcCCe
Q 026543 170 PIDSQEILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 170 ~~~~~~~~~igD~~~Di~~a~~~G~~ 195 (237)
++..|++|| ...+.+....+|+.
T Consensus 90 --~~~kv~viG-~~~l~~~l~~~G~~ 112 (269)
T COG0647 90 --PGKKVYVIG-EEGLKEELEGAGFE 112 (269)
T ss_pred --CCCEEEEEC-CcchHHHHHhCCcE
Confidence 235666666 33444555555643
No 191
>PLN03190 aminophospholipid translocase; Provisional
Probab=97.43 E-value=0.00017 Score=66.69 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=36.2
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCCC
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPKD 226 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~l 226 (237)
..-+++|||+.||+.|.+.|.+.. ++....+. .....+|+.+..|..|...|
T Consensus 871 ~~vtlaIGDGaNDv~mIq~AdVGI-GIsG~EG~-qA~~aSDfaI~~Fr~L~rLL 922 (1178)
T PLN03190 871 SDMTLAIGDGANDVSMIQMADVGV-GISGQEGR-QAVMASDFAMGQFRFLVPLL 922 (1178)
T ss_pred CcEEEEECCCcchHHHHHhcCeee-eecCchhH-HHHHhhccchhhhHHHHHHH
Confidence 356899999999999999998443 44332221 23557888888888765443
No 192
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00048 Score=54.02 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=70.7
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhh--hhhhhhcceeeeCCC-CCc--cCCCCCH-----------
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKH--RELFSLMHHVVRGDD-PEV--KQGKPSP----------- 156 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~--~gl~~~f~~~~~~~~-~~~--~~~kp~~----------- 156 (237)
+.-.|....+++.|+++|.++.++||++...+...+.-. -.+.+.||.|+...+ +.. ...+|-.
T Consensus 239 i~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~w 318 (510)
T KOG2470|consen 239 IERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLW 318 (510)
T ss_pred hhccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhh
Confidence 456678889999999999999999997776554322111 236788998875320 000 0111111
Q ss_pred --------------HHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHH-HcCCeEEEEcC
Q 026543 157 --------------DIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAK-NAGMSVVMVPD 201 (237)
Q Consensus 157 --------------~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~-~~G~~~i~v~~ 201 (237)
..+...++--+ ....+++++||.. +|+.... ..||.+-.+-.
T Consensus 319 dkv~klekgkiYy~G~l~~flelt~---WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 319 DKVDKLEKGKIYYQGNLKSFLELTG---WRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred hhhhhcccCceeeeccHHHHHHHhc---cCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 01233455556 8899999999999 9998877 88998776643
No 193
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.29 E-value=0.0015 Score=55.56 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=62.8
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.++.+++.+.++.|++.|++++++|+... .....+.+.+|+ + +. -.|+....+.+++. -.
T Consensus 346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~-~~a~~ia~~lgi-------~-~~--------~~p~~K~~~v~~l~---~~ 405 (499)
T TIGR01494 346 DPLRDDAKETISELREAGIRVIMLTGDNV-LTAKAIAKELGI-------F-AR--------VTPEEKAALVEALQ---KK 405 (499)
T ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHcCc-------e-ec--------cCHHHHHHHHHHHH---HC
Confidence 57899999999999999999999998444 445456666664 1 11 23555556666665 45
Q ss_pred CCcEEEEecCHHHHHHHHHcCCe
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~ 195 (237)
...+.|+||+.||..+.+.+++.
T Consensus 406 g~~v~~vGDg~nD~~al~~Advg 428 (499)
T TIGR01494 406 GRVVAMTGDGVNDAPALKKADVG 428 (499)
T ss_pred CCEEEEECCChhhHHHHHhCCCc
Confidence 57899999999999999999854
No 194
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=97.16 E-value=0.0094 Score=49.73 Aligned_cols=174 Identities=10% Similarity=0.042 Sum_probs=84.5
Q ss_pred CccEEEEecCcccccchhhHHHHHHHHHHHcCCC-------CCHHH-HHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHH
Q 026543 9 PITHVIFDMDGLLLDTEKFYTEVQELILARYNKT-------FDWSL-KAKMMGKKAIEAAQVFVEETGISDKLSAEDFLV 80 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (237)
..+.++||+||||+.+...+...+.-+++.-|.. ..+.. .....+... ...+.+....=.. ...+++..
T Consensus 7 ~~~~~~fD~DGTLlrs~ssFpyFmlva~eagG~~R~~~LL~l~P~l~ll~~~~~~~-~~lK~mi~v~f~G--l~~~die~ 83 (498)
T PLN02499 7 TSYSVVSELEGTLLKDADPFSYFMLVAFEASGLIRFALLLFLWPIIRLLDMLGMGD-AALKLMIFVATAG--VHESEIES 83 (498)
T ss_pred ccceEEEecccceecCCCccHHHHHHHHHhccHHHHHHHHHHhHHHHHHHhcCCch-HHHHHHHHHHhCC--CCHHHHHH
Confidence 3578999999999986665544444333333321 01111 111112122 2222232221111 44566655
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhh-hhhhhhcc--------eeeeCCCCCccC
Q 026543 81 QREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKH-RELFSLMH--------HVVRGDDPEVKQ 151 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~-~gl~~~f~--------~~~~~~~~~~~~ 151 (237)
..+....+.+.+. +.+. .++..++.| +++++|....- +.+.+++. +|.+.... +.++|. - .
T Consensus 84 vaRavlpkf~~~d-v~~e---~~~~~~~~g-~~vVVTAsPrv-mVEpFake~LG~D~VvGTEL~v~~~G~~TG~--~--~ 153 (498)
T PLN02499 84 VARAVLPKFYMDD-VDME---AWKVFSSCD-KRVVVTRMPRV-MVERFAKEHLRADEVIGSELVVNRFGFATGF--I--R 153 (498)
T ss_pred HHHHHhhHHHHhh-CCHH---HHHHHHcCC-eEEEEeCCHHH-HHHHHHHHhcCCceEEeeeEEEeeccEEEEE--E--e
Confidence 5555544433221 2222 556667777 89999985554 44467775 66533211 122221 1 1
Q ss_pred CCCCHHH-HHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcC
Q 026543 152 GKPSPDI-FLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 152 ~kp~~~~-~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~ 201 (237)
++...+. ...+.+.++ +....+-+||+..|-.-..-+ +.++|.+
T Consensus 154 G~n~~ek~~~rl~~~~g----~~~~~vg~~~~~~~~~f~~~c--k~~~~~~ 198 (498)
T PLN02499 154 GTDVDQSVANRVANLFV----DERPQLGLGRISASSSFLSLC--KEQIHPP 198 (498)
T ss_pred cCccHHHHHHHHHHHhC----ccCceecccCCcccchhhhhC--ceEEecC
Confidence 1222333 344445566 234578888888666655553 4555544
No 195
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.15 E-value=0.0027 Score=49.73 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=57.0
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHH--HHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFEL--KTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~--~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
++||+.++|+.|+++|++++++||+....... ..++.+|+....+.++++. ......+++.. ..
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~-----------~~~~~~l~~~~---~~ 84 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSA-----------LCAARLLRQPP---DA 84 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHH-----------HHHHHHHHhhC---cC
Confidence 77889999999999999999999965332221 2245566644444444332 34555666654 45
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEE
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVV 197 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i 197 (237)
..+++++|+.. -.+.++..|+..+
T Consensus 85 ~~~v~~iG~~~-~~~~l~~~g~~~~ 108 (279)
T TIGR01452 85 PKAVYVIGEEG-LRAELDAAGIRLA 108 (279)
T ss_pred CCEEEEEcCHH-HHHHHHHCCCEEe
Confidence 57799999753 3445567787643
No 196
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.97 E-value=0.065 Score=39.94 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=28.4
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhh
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHREL 134 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl 134 (237)
.++.||+.+.++.+.+. ..-+|+|.+...+ ..++.+..|+
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy-~~r~a~~ig~ 121 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSYTQY-LRRTASMIGV 121 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccHHHH-HHHHHHhcCC
Confidence 67999999999999887 5666777645444 4455666554
No 197
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.92 E-value=0.013 Score=43.39 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=17.2
Q ss_pred cEEEEecCHHHHHHHHHcCCe
Q 026543 175 EILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 175 ~~~~igD~~~Di~~a~~~G~~ 195 (237)
-++.+||++||+.+..-....
T Consensus 211 ~t~~~GDg~nD~Pl~ev~d~A 231 (274)
T COG3769 211 TTLGLGDGPNDAPLLEVMDYA 231 (274)
T ss_pred EEEecCCCCCcccHHHhhhhh
Confidence 489999999999988766543
No 198
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.89 E-value=0.0075 Score=41.72 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=31.2
Q ss_pred CCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCC
Q 026543 171 IDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 171 ~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~ 204 (237)
..+++++||||++ .||-+|...|.-++|...|..
T Consensus 137 ~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~ 171 (190)
T KOG2961|consen 137 CTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVR 171 (190)
T ss_pred CChhHeEEEccchhhhHhhhhhccceeEEeccccc
Confidence 5789999999999 999999999999999988765
No 199
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=96.88 E-value=0.0047 Score=48.08 Aligned_cols=54 Identities=28% Similarity=0.346 Sum_probs=39.3
Q ss_pred cCCCCCHHHHHHHH-------HHcCCCCCCCCcEEEEecCH-HHHHHHH---------------HcCCeEEEEcCCCC
Q 026543 150 KQGKPSPDIFLAAA-------KRFEGGPIDSQEILVFEDAP-SGVLAAK---------------NAGMSVVMVPDPRL 204 (237)
Q Consensus 150 ~~~kp~~~~~~~~l-------~~~~~~~~~~~~~~~igD~~-~Di~~a~---------------~~G~~~i~v~~~~~ 204 (237)
..+||.+-.|..+- +..+ ..-+++...+|||.+ .|+..|. +-||..|.|.+|-.
T Consensus 268 t~GKPt~ltY~~A~~vl~~~ak~~~-~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV~ 344 (389)
T KOG1618|consen 268 TLGKPTKLTYDYAEDVLRRQAKRRG-GAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGVY 344 (389)
T ss_pred ccCCCceehHHhHHHHHHHHHHhhc-ccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeeee
Confidence 46788887666532 1222 125678899999999 9999996 66888999987655
No 200
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.0082 Score=45.20 Aligned_cols=129 Identities=15% Similarity=0.127 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHhCCCC------CCCHHHHHHHHHHHHHhhcCCCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHh
Q 026543 56 AIEAAQVFVEETGISD------KLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQ 129 (237)
Q Consensus 56 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~ 129 (237)
..+....+.++++.+. +.+...+.+...+. .+.+..|+.+++..|.++++++.|+|.+-...+..-+.
T Consensus 100 ieEKvp~MeeWW~kSH~Lliq~~f~k~~I~~~Va~s------~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~ 173 (298)
T KOG3128|consen 100 IEEKVPHMEEWWTKSHELLIQGGFSKNAIDDIVAES------NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTR 173 (298)
T ss_pred hhhhchHHHHHHhcccceeecCCcCHHHHHHHHHHh------hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHH
Confidence 3444555556655432 23444444444332 25578899999999999999999999988877766555
Q ss_pred hhhhhhhhcceeeeCC-----CC-CccCCC-------CCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHc
Q 026543 130 KHRELFSLMHHVVRGD-----DP-EVKQGK-------PSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNA 192 (237)
Q Consensus 130 ~~~gl~~~f~~~~~~~-----~~-~~~~~k-------p~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~ 192 (237)
+..++.. +..+++-. +. -.+..+ .+...++...+.+.. .-...++++.|||..|+.||.-+
T Consensus 174 q~~~~~p-n~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~~s~yf~~-~~~~~nVillGdsigdl~ma~gv 247 (298)
T KOG3128|consen 174 QKLVLHP-NVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQNESEYFHQ-LAGRVNVILLGDSIGDLHMADGV 247 (298)
T ss_pred HHhccCc-cHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHHhhhHHHhh-ccCCceEEEeccccccchhhcCC
Confidence 5555433 22222110 00 001111 122334444444441 13567899999999999998765
No 201
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.0028 Score=52.56 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
...-||+++-+.+|++-|++.+.+|+ +.+.....+.+..|++++... .+|+-...+.++.+ ..
T Consensus 446 DivK~Gi~ERf~elR~MgIkTvM~TG-DN~~TAa~IA~EAGVDdfiAe-------------atPEdK~~~I~~eQ---~~ 508 (681)
T COG2216 446 DIVKPGIKERFAELRKMGIKTVMITG-DNPLTAAAIAAEAGVDDFIAE-------------ATPEDKLALIRQEQ---AE 508 (681)
T ss_pred hhcchhHHHHHHHHHhcCCeEEEEeC-CCHHHHHHHHHHhCchhhhhc-------------CChHHHHHHHHHHH---hc
Confidence 35688999999999999999999998 554555566666676553221 13555667777777 67
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
.+=+-|.||+.||..+..++. +++.+...
T Consensus 509 grlVAMtGDGTNDAPALAqAd---Vg~AMNsG 537 (681)
T COG2216 509 GRLVAMTGDGTNDAPALAQAD---VGVAMNSG 537 (681)
T ss_pred CcEEEEcCCCCCcchhhhhcc---hhhhhccc
Confidence 778899999999999999998 44554433
No 202
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=96.76 E-value=0.015 Score=44.15 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=51.2
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeee------------CCCCCccCCCC-CHHH
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVR------------GDDPEVKQGKP-SPDI 158 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~------------~~~~~~~~~kp-~~~~ 158 (237)
.+.+++|+.++++.|.++++++.|+|+|-.+.+...+.+. +....-=.|++ +-.....+.-- +...
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~-~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~ 166 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA-GVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESA 166 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT-T--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc-CCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccc
Confidence 4789999999999999999999999998887766554443 33211111221 11001111110 1112
Q ss_pred H--HHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHc
Q 026543 159 F--LAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNA 192 (237)
Q Consensus 159 ~--~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~ 192 (237)
+ ....+++. ...+++.+|||..|+.|+..+
T Consensus 167 l~~~~~~~~~~----~R~NvlLlGDslgD~~Ma~G~ 198 (246)
T PF05822_consen 167 LEDSPYFKQLK----KRTNVLLLGDSLGDLHMADGV 198 (246)
T ss_dssp HTTHHHHHCTT----T--EEEEEESSSGGGGTTTT-
T ss_pred ccCchHHHHhc----cCCcEEEecCccCChHhhcCC
Confidence 2 11223343 578999999999999998766
No 203
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=96.75 E-value=0.014 Score=44.31 Aligned_cols=76 Identities=17% Similarity=0.107 Sum_probs=48.6
Q ss_pred CCCEEEEeCChhhHHHHHHhhhh-hhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHH
Q 026543 110 GIPMCVATGSLARHFELKTQKHR-ELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLA 188 (237)
Q Consensus 110 g~~v~i~s~~~~~~~~~~~~~~~-gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~ 188 (237)
.++++++|.++...-. +.++.+ .+.-.+|..+.-. +.+| ..+|+.++ --||++|....++.
T Consensus 186 piRtalVTAR~apah~-RvI~TLr~Wgv~vDEafFLg------G~~K----~~vL~~~~-------phIFFDDQ~~H~~~ 247 (264)
T PF06189_consen 186 PIRTALVTARSAPAHE-RVIRTLRSWGVRVDEAFFLG------GLPK----GPVLKAFR-------PHIFFDDQDGHLES 247 (264)
T ss_pred ceEEEEEEcCCCchhH-HHHHHHHHcCCcHhHHHHhC------CCch----hHHHHhhC-------CCEeecCchhhhhH
Confidence 4889999987665433 333321 2222344333222 1223 33677777 45999999999999
Q ss_pred HHHcCCeEEEEcCCCC
Q 026543 189 AKNAGMSVVMVPDPRL 204 (237)
Q Consensus 189 a~~~G~~~i~v~~~~~ 204 (237)
|. .++++..|+.|..
T Consensus 248 a~-~~vps~hVP~gv~ 262 (264)
T PF06189_consen 248 AS-KVVPSGHVPYGVA 262 (264)
T ss_pred hh-cCCCEEeccCCcC
Confidence 99 8889999987754
No 204
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=96.73 E-value=0.037 Score=44.22 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCC
Q 026543 155 SPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~ 203 (237)
+...|+++.+++| ....-++|||+...-.+|++..|++.-+....
T Consensus 410 KescFerI~~RFg----~K~~yvvIgdG~eee~aAK~ln~PfwrI~~h~ 454 (468)
T KOG3107|consen 410 KESCFERIQSRFG----RKVVYVVIGDGVEEEQAAKALNMPFWRISSHS 454 (468)
T ss_pred HHHHHHHHHHHhC----CceEEEEecCcHHHHHHHHhhCCceEeeccCc
Confidence 3678999999999 46677889999999999999999998886543
No 205
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0031 Score=55.26 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=62.0
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcc--eeeeCCCCCc------------------cCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMH--HVVRGDDPEV------------------KQG 152 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~--~~~~~~~~~~------------------~~~ 152 (237)
.+.+||+++.++.|++.|+.|..+|+.+. .....+....|+...-+ ..+.|. +. ...
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI-~TAkAIA~eCGILt~~~d~~~lEG~--eFr~~s~ee~~~i~pkl~VlARS 722 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNI-NTAKAIARECGILTPGGDFLALEGK--EFRELSQEERDKIWPKLRVLARS 722 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcH-HHHHHHHHHcccccCCCccceecch--hhhhcCHHHHHhhhhhheeeecC
Confidence 57899999999999999999999998443 44445666666643322 112111 10 011
Q ss_pred CC-CHHHHHHHHHHcCCCCCCCCcEEEE-ecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 153 KP-SPDIFLAAAKRFEGGPIDSQEILVF-EDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 153 kp-~~~~~~~~l~~~~~~~~~~~~~~~i-gD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
-| +...+-+.+++.| ++++| ||+.||-.+.+.|. |++++|-.
T Consensus 723 SP~DK~lLVk~L~~~g-------~VVAVTGDGTNDaPALkeAD---VGlAMGIa 766 (1034)
T KOG0204|consen 723 SPNDKHLLVKGLIKQG-------EVVAVTGDGTNDAPALKEAD---VGLAMGIA 766 (1034)
T ss_pred CCchHHHHHHHHHhcC-------cEEEEecCCCCCchhhhhcc---cchhcccc
Confidence 11 1122223334444 66666 99999999999999 55555544
No 206
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.56 E-value=0.003 Score=44.97 Aligned_cols=96 Identities=16% Similarity=0.260 Sum_probs=59.1
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhh-hhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHREL-FSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl-~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
+...||+.++|+.+.+. +.++|.|.+...+.. .+++.+.- ..+|+.+++.+ .....+. .+.+-++.++ -
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~-~v~~~ldp~~~~~~~~~~r~--~~~~~~~---~~~KdL~~l~---~ 104 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSASEEYAE-PVLDALDPNGKLFSRRLYRD--DCTFDKG---SYIKDLSKLG---R 104 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHH-HHHHHHTTTTSSEEEEEEGG--GSEEETT---EEE--GGGSS---S
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEeehhhhhh-HHHHhhhhhccccccccccc--ccccccc---ccccchHHHh---h
Confidence 66899999999999776 999999998776655 45666554 45688888766 3221111 1125677777 7
Q ss_pred CCCcEEEEecCHHHHHHHHHcCCeEEEEcC
Q 026543 172 DSQEILVFEDAPSGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 172 ~~~~~~~igD~~~Di~~a~~~G~~~i~v~~ 201 (237)
+.+++++|+|++.-...-...+ +.|..
T Consensus 105 ~~~~vvivDD~~~~~~~~~~N~---i~v~~ 131 (159)
T PF03031_consen 105 DLDNVVIVDDSPRKWALQPDNG---IPVPP 131 (159)
T ss_dssp -GGGEEEEES-GGGGTTSGGGE---EE---
T ss_pred ccccEEEEeCCHHHeeccCCce---EEecc
Confidence 8999999999997544334444 55544
No 207
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=96.42 E-value=0.056 Score=49.93 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=26.1
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCCh
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSL 120 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~ 120 (237)
+.++.+|+.+.++.|+++|++++++|+..
T Consensus 649 EDkLQdgVPetI~~L~~AGIKIWVLTGDK 677 (1151)
T KOG0206|consen 649 EDKLQDGVPETIAKLAQAGIKIWVLTGDK 677 (1151)
T ss_pred echhccCchHHHHHHHHcCCEEEEEcCcH
Confidence 46789999999999999999999999833
No 208
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.0055 Score=52.68 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=34.2
Q ss_pred CCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCC
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~ 225 (237)
.+++.+|||+-||+.|.+.|.+. |++....+.+ ..-.||+-+..|..+...
T Consensus 781 ~krvc~IGDGGNDVsMIq~A~~G-iGI~gkEGkQ-ASLAADfSItqF~Hv~rL 831 (1051)
T KOG0210|consen 781 GKRVCAIGDGGNDVSMIQAADVG-IGIVGKEGKQ-ASLAADFSITQFSHVSRL 831 (1051)
T ss_pred CceEEEEcCCCccchheeecccc-eeeecccccc-cchhccccHHHHHHHHHH
Confidence 47899999999999999988644 4444333322 234577777777665433
No 209
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=96.12 E-value=0.05 Score=41.90 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=37.7
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCCh---hhHHHHHHhhhhhhhhhcceeeeC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSL---ARHFELKTQKHRELFSLMHHVVRG 144 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~---~~~~~~~~~~~~gl~~~f~~~~~~ 144 (237)
..+.|++.++++.|+++|++++++||+. ..... ..++.+|+....+.++++
T Consensus 16 ~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~-~~l~~~g~~~~~~~iit~ 69 (249)
T TIGR01457 16 KERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVA-EMLASFDIPATLETVFTA 69 (249)
T ss_pred CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHH-HHHHHcCCCCChhhEeeH
Confidence 3467899999999999999999999844 33333 345667777666677665
No 210
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.01 E-value=0.0029 Score=56.39 Aligned_cols=66 Identities=12% Similarity=-0.061 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCC
Q 026543 151 QGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~ 225 (237)
.+..|..+..++++ + ++++.+++|||+.||..|.+.++.....|..|+. ...|++.+++.+|+...
T Consensus 654 ~~vnKG~al~~ll~--~---~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~----~s~A~~~l~~~~eV~~~ 719 (726)
T PRK14501 654 AGVNKGRAVRRLLE--A---GPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG----ESRARYRLPSQREVREL 719 (726)
T ss_pred CCCCHHHHHHHHHh--c---CCCCEEEEECCCCChHHHHHhcccCceEEEECCC----CCcceEeCCCHHHHHHH
Confidence 34456888888888 6 7789999999999999999997533345555554 45667777776665443
No 211
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.00 E-value=0.065 Score=44.41 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=71.3
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCC--CCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDD--PEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~--~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
+++...++++..|+++|+-++|+|-+........+.++ -|+++--++ .......|+.+.++++++++| +
T Consensus 255 ~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~kh------p~MiLkeedfa~~~iNW~~K~eNirkIAkklN---l 325 (574)
T COG3882 255 EAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKH------PDMILKEEDFAVFQINWDPKAENIRKIAKKLN---L 325 (574)
T ss_pred hhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhC------CCeEeeHhhhhhheecCCcchhhHHHHHHHhC---C
Confidence 45667889999999999999999986666555544332 355554331 012356789999999999999 9
Q ss_pred CCCcEEEEecCHHHHHHHHHcCC
Q 026543 172 DSQEILVFEDAPSGVLAAKNAGM 194 (237)
Q Consensus 172 ~~~~~~~igD~~~Di~~a~~~G~ 194 (237)
-.+..+|++|++...+-.+.-+-
T Consensus 326 g~dSmvFiDD~p~ErE~vk~~~~ 348 (574)
T COG3882 326 GLDSMVFIDDNPAERELVKRELP 348 (574)
T ss_pred CccceEEecCCHHHHHHHHhcCc
Confidence 99999999999999998888875
No 212
>PRK10444 UMP phosphatase; Provisional
Probab=95.25 E-value=0.17 Score=38.95 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=35.2
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHH--HHHhhhhhhhhhcceeeeC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFE--LKTQKHRELFSLMHHVVRG 144 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~--~~~~~~~gl~~~f~~~~~~ 144 (237)
+.|++.++++.|+++|.+++++||+...... ...++.+|+.--.+.++++
T Consensus 18 ~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts 69 (248)
T PRK10444 18 AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTS 69 (248)
T ss_pred eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecH
Confidence 6899999999999999999999998764332 1224445664334555544
No 213
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.015 Score=39.73 Aligned_cols=88 Identities=18% Similarity=0.267 Sum_probs=52.9
Q ss_pred cCCCCCCccHHHHHHHHHhCCCCEEEEeCC--hhhHHHHHH---hhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHH
Q 026543 90 FPTSELMPGASHLIRHLHAKGIPMCVATGS--LARHFELKT---QKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAK 164 (237)
Q Consensus 90 ~~~~~~~~~~~~~l~~l~~~g~~v~i~s~~--~~~~~~~~~---~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~ 164 (237)
++...+.|+++..++.|.+. +.|+|+|.. .......+. .+.+.+..+-..++|+. |
T Consensus 64 FRnL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn-------K----------- 124 (180)
T COG4502 64 FRNLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN-------K----------- 124 (180)
T ss_pred hhhcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC-------C-----------
Confidence 34578999999999999998 999999986 222222221 12222233334566665 1
Q ss_pred HcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 165 RFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 165 ~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
| + .+-=++|+|++-.++.+. |.+...-+..+.
T Consensus 125 --n---i-vkaDilIDDnp~nLE~F~--G~kIlFdA~HN~ 156 (180)
T COG4502 125 --N---I-VKADILIDDNPLNLENFK--GNKILFDAHHNK 156 (180)
T ss_pred --C---e-EEeeEEecCCchhhhhcc--CceEEEeccccc
Confidence 1 1 112278999999988776 555444333333
No 214
>PLN02580 trehalose-phosphatase
Probab=95.06 E-value=0.012 Score=47.78 Aligned_cols=70 Identities=14% Similarity=-0.024 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCCc---EEEEecCHHHHHHHHHc-----CCeEEEEcCCCCCcccccchhhhhhhhcccC
Q 026543 152 GKPSPDIFLAAAKRFEGGPIDSQE---ILVFEDAPSGVLAAKNA-----GMSVVMVPDPRLDSSYHSNADQLLSSLLGFN 223 (237)
Q Consensus 152 ~kp~~~~~~~~l~~~~~~~~~~~~---~~~igD~~~Di~~a~~~-----G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~ 223 (237)
+..|..++..++++++ ++..+ .++|||..||..|.+.+ |+. |.|..+.. ...|.+.+++..|+.
T Consensus 299 g~~KG~Av~~Ll~~~g---~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~-I~Vgn~~~----~t~A~y~L~dp~eV~ 370 (384)
T PLN02580 299 DWNKGKAVEFLLESLG---LSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYG-ILVSSVPK----ESNAFYSLRDPSEVM 370 (384)
T ss_pred CCCHHHHHHHHHHhcC---CCcccceeEEEECCCchHHHHHHhhhccCCceE-EEEecCCC----CccceEEcCCHHHHH
Confidence 4567899999999999 87653 38999999999999963 533 33432222 456677777777776
Q ss_pred CCCCCC
Q 026543 224 PKDWGL 229 (237)
Q Consensus 224 ~~l~~l 229 (237)
.+|..|
T Consensus 371 ~~L~~L 376 (384)
T PLN02580 371 EFLKSL 376 (384)
T ss_pred HHHHHH
Confidence 665433
No 215
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=94.69 E-value=0.23 Score=33.41 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=59.7
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh---------hhcceeeeCCCCCccCCCCCHHHHHHH
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF---------SLMHHVVRGDDPEVKQGKPSPDIFLAA 162 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~---------~~f~~~~~~~~~~~~~~kp~~~~~~~~ 162 (237)
.+..+++++..|..|+++|+.++++|++....+....++.+.+. ..|+.+..++ . .+-..+..+
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~--g-----sklghfke~ 114 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGD--G-----SKLGHFKEF 114 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecC--c-----ccchhHHHH
Confidence 37799999999999999999999999988887776666654332 2344444444 1 123345566
Q ss_pred HHHcCCCCCCCCcEEEEecCHHH
Q 026543 163 AKRFEGGPIDSQEILVFEDAPSG 185 (237)
Q Consensus 163 l~~~~~~~~~~~~~~~igD~~~D 185 (237)
-+..+ +..++..+++|-..+
T Consensus 115 ~n~s~---~~~k~~~~fdDesrn 134 (144)
T KOG4549|consen 115 TNNSN---SIEKNKQVFDDESRN 134 (144)
T ss_pred hhccC---cchhceeeecccccC
Confidence 66666 888888888887643
No 216
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=94.62 E-value=0.38 Score=36.73 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=52.4
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhH---HHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARH---FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGG 169 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~---~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~ 169 (237)
..++|++.+.++.++++|+++.++||+.... ....+.+.+|+.-..+.++.+. ......+++..
T Consensus 13 ~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~-----------~~~~~~l~~~~-- 79 (236)
T TIGR01460 13 HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSG-----------SVTKDLLRQRF-- 79 (236)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHH-----------HHHHHHHHHhC--
Confidence 4578999999999999999999999866322 3334444356655555665443 22333333322
Q ss_pred CCCCCcEEEEecCHHHHHHHHHcCC
Q 026543 170 PIDSQEILVFEDAPSGVLAAKNAGM 194 (237)
Q Consensus 170 ~~~~~~~~~igD~~~Di~~a~~~G~ 194 (237)
+.+.++++|.. ...+.++..|+
T Consensus 80 --~~~~v~v~G~~-~~~~~l~~~g~ 101 (236)
T TIGR01460 80 --EGEKVYVIGVG-ELRESLEGLGF 101 (236)
T ss_pred --CCCEEEEECCH-HHHHHHHHcCC
Confidence 22457777753 34445556664
No 217
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=94.60 E-value=0.015 Score=52.46 Aligned_cols=72 Identities=17% Similarity=-0.029 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHH---cCCCCCCCCcEEEEecCHHHHHHHHHcCCe-----------EEEEcCCCCCcccccchhhhh
Q 026543 151 QGKPSPDIFLAAAKR---FEGGPIDSQEILVFEDAPSGVLAAKNAGMS-----------VVMVPDPRLDSSYHSNADQLL 216 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~---~~~~~~~~~~~~~igD~~~Di~~a~~~G~~-----------~i~v~~~~~~~~~~~~~~~~~ 216 (237)
.+..|..++..++++ +| +.++.+++|||+.||..|.+.++-. .+.|..|.. ...|.+.+
T Consensus 759 ~gvnKG~Al~~Ll~~~~~~g---~~~d~vl~~GDD~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~~----~S~A~y~L 831 (854)
T PLN02205 759 QGVSKGLVAKRLLSIMQERG---MLPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTVGQK----PSKAKYYL 831 (854)
T ss_pred CCCCHHHHHHHHHHHHHhcC---CCcccEEEEcCCccHHHHHHHhhhhccCCcccccccceeEEECCC----CccCeEec
Confidence 344567888888754 57 8999999999999999999988621 123333332 45556666
Q ss_pred hhhcccCCCCCCC
Q 026543 217 SSLLGFNPKDWGL 229 (237)
Q Consensus 217 ~~~~el~~~l~~l 229 (237)
++..|+..+|..|
T Consensus 832 ~d~~eV~~lL~~L 844 (854)
T PLN02205 832 DDTAEIVRLMQGL 844 (854)
T ss_pred CCHHHHHHHHHHH
Confidence 6666665555443
No 218
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=94.38 E-value=0.025 Score=41.99 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=16.8
Q ss_pred EEEEecCcccccch-hhHHHHHHHHHH
Q 026543 12 HVIFDMDGLLLDTE-KFYTEVQELILA 37 (237)
Q Consensus 12 ~vifD~DGTL~~~~-~~~~~~~~~~~~ 37 (237)
+|+||+||||+++. ........+++.
T Consensus 1 li~~D~DgTL~~~~~~~~~~~~~~~l~ 27 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAHELSPETIEALE 27 (204)
T ss_pred CEEEeCcCCCcCCCCCcCCHHHHHHHH
Confidence 47899999999875 333333334333
No 219
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=94.36 E-value=0.077 Score=42.68 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=57.3
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhH--------HHHHH---hhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARH--------FELKT---QKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAA 163 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~--------~~~~~---~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l 163 (237)
+++.+..=++.+.+.|+.++|.||..... +..++ ...+++ . ..+.+.+......||...+++..+
T Consensus 105 l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~v--P--i~~~~A~~~~~yRKP~tGMwe~~~ 180 (422)
T KOG2134|consen 105 LFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGV--P--IQLLAAIIKGKYRKPSTGMWEFLK 180 (422)
T ss_pred eccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCC--c--eEEeeeccCCcccCcchhHHHHHH
Confidence 34444455677889999999999843221 11111 111111 1 111222113347899999999998
Q ss_pred HHcCC-CCCCCCcEEEEec---------------CHHHHHHHHHcCCe
Q 026543 164 KRFEG-GPIDSQEILVFED---------------APSGVLAAKNAGMS 195 (237)
Q Consensus 164 ~~~~~-~~~~~~~~~~igD---------------~~~Di~~a~~~G~~ 195 (237)
+..+. ..+.-+.++|+|| |..|+.-|.++|++
T Consensus 181 ~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvk 228 (422)
T KOG2134|consen 181 RLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVK 228 (422)
T ss_pred HHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCc
Confidence 77762 2255566667776 34789999999965
No 220
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=94.25 E-value=0.025 Score=40.76 Aligned_cols=18 Identities=44% Similarity=0.719 Sum_probs=15.6
Q ss_pred CCccEEEEecCcccccch
Q 026543 8 KPITHVIFDMDGLLLDTE 25 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~ 25 (237)
+.+|+++||+||||+|..
T Consensus 5 ~~i~~~v~d~dGv~tdg~ 22 (169)
T TIGR02726 5 KNIKLVILDVDGVMTDGR 22 (169)
T ss_pred ccCeEEEEeCceeeECCe
Confidence 458999999999999864
No 221
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=93.98 E-value=0.072 Score=41.24 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=35.6
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHH--HHHHhhhhhhhhhcceeeeC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHF--ELKTQKHRELFSLMHHVVRG 144 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~--~~~~~~~~gl~~~f~~~~~~ 144 (237)
+.|++.++++.|+++|++++++||++.... ....++.+|+.--.+.++++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTP 73 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcH
Confidence 788999999999999999999999765532 22335556665434455543
No 222
>PLN02580 trehalose-phosphatase
Probab=93.68 E-value=0.19 Score=41.12 Aligned_cols=32 Identities=6% Similarity=0.173 Sum_probs=26.0
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFE 125 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~ 125 (237)
..+.+++.++|+.|.+. .+++|+|++....+.
T Consensus 140 A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~ 171 (384)
T PLN02580 140 ALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVY 171 (384)
T ss_pred ccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHH
Confidence 44667888999999988 689999998877654
No 223
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=93.20 E-value=0.48 Score=38.00 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=57.8
Q ss_pred CCCCCccHHHHHHHHHhC----CCCEEEEeCChh---hHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHH
Q 026543 92 TSELMPGASHLIRHLHAK----GIPMCVATGSLA---RHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAK 164 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~----g~~v~i~s~~~~---~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~ 164 (237)
...+.+++.++++.|+.+ |+++.++||+.. ......+.+.+|+.--.+.++.+. .....+++
T Consensus 14 g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~-----------~~~~~ll~ 82 (321)
T TIGR01456 14 GKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH-----------SPYKSLVN 82 (321)
T ss_pred CccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh-----------HHHHHHHH
Confidence 355799999999999998 999999999763 333333335566543333443322 13345555
Q ss_pred HcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEE
Q 026543 165 RFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVM 198 (237)
Q Consensus 165 ~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~ 198 (237)
+++ ..+++||.+. -.+.++.+|+..+.
T Consensus 83 ~~~------~~v~viG~~~-~~~~l~~~G~~~vv 109 (321)
T TIGR01456 83 KYE------KRILAVGTGS-VRGVAEGYGFQNVV 109 (321)
T ss_pred HcC------CceEEEeChH-HHHHHHHcCCcccc
Confidence 544 2678888764 56777789987653
No 224
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=93.12 E-value=0.24 Score=44.42 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=24.7
Q ss_pred CCccHHHHHHHHHh-CCCCEEEEeCChhhHHH
Q 026543 95 LMPGASHLIRHLHA-KGIPMCVATGSLARHFE 125 (237)
Q Consensus 95 ~~~~~~~~l~~l~~-~g~~v~i~s~~~~~~~~ 125 (237)
+.+.+.+.|+.|.+ .|+.++|+|++......
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~ 546 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGRDRDTLE 546 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHH
Confidence 45677888899988 48999999998776554
No 225
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=92.94 E-value=0.25 Score=40.12 Aligned_cols=106 Identities=18% Similarity=0.131 Sum_probs=74.2
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhh--hhhhhcceeeeCC---------------C------------
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHR--ELFSLMHHVVRGD---------------D------------ 146 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~--gl~~~f~~~~~~~---------------~------------ 146 (237)
.+-+..++..++..|.+..++||+.......-....+ ++..+|+.++... .
T Consensus 200 d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~ 279 (424)
T KOG2469|consen 200 DGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNT 279 (424)
T ss_pred cCccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccC
Confidence 4444458999999999999999987776553333333 4667888776441 0
Q ss_pred -CCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHH-HHcCCeEEEEcCCCC
Q 026543 147 -PEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAA-KNAGMSVVMVPDPRL 204 (237)
Q Consensus 147 -~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a-~~~G~~~i~v~~~~~ 204 (237)
+....+++++.....+++.++ ....+++++||.. .|+--- +.-|+.++.|.....
T Consensus 280 ~p~e~~~~ySggs~~~~~~~l~---~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~peL~ 337 (424)
T KOG2469|consen 280 GPLEQGGVYSGGSLKTVETSMK---VKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPELE 337 (424)
T ss_pred CcchhcccCCcchHHHHHHHhc---ccccceeecccceeeeEEecceecceEEEEEehhhh
Confidence 011134556677888899999 8889999999998 666544 455999888876554
No 226
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=92.80 E-value=1.4 Score=30.43 Aligned_cols=102 Identities=16% Similarity=0.210 Sum_probs=51.4
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHH-hhhhhh---hhhcceeeeCCCCCc-----cCCCCCHHHHHHHHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKT-QKHREL---FSLMHHVVRGDDPEV-----KQGKPSPDIFLAAAKR 165 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~-~~~~gl---~~~f~~~~~~~~~~~-----~~~kp~~~~~~~~l~~ 165 (237)
....+.+++....++|-+++++-|+........+ .+..++ .......+.... .. ...-..+.....+++.
T Consensus 20 ~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (138)
T PF13580_consen 20 AIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALND-DALTAISNDLEYDEGFARQLLAL 98 (138)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTS-THHHHHHHHTTGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCccccccccccc-chHhhhhcccchhhHHHHHHHHH
Confidence 4455666777777788899999987664432222 222222 222222222210 10 0111123445667778
Q ss_pred cCCCCCCCCcEEEE----ecCHHHHHHH---HHcCCeEEEEc
Q 026543 166 FEGGPIDSQEILVF----EDAPSGVLAA---KNAGMSVVMVP 200 (237)
Q Consensus 166 ~~~~~~~~~~~~~i----gD~~~Di~~a---~~~G~~~i~v~ 200 (237)
++ +.|.+++++ |.+++=++++ ++.|+++|.++
T Consensus 99 ~~---~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 99 YD---IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp TT-----TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred cC---CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 77 889888877 6777666555 45599999875
No 227
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=92.77 E-value=0.28 Score=44.61 Aligned_cols=31 Identities=6% Similarity=0.121 Sum_probs=22.0
Q ss_pred CCccHHHHHHHH-HhCCCCEEEEeCChhhHHH
Q 026543 95 LMPGASHLIRHL-HAKGIPMCVATGSLARHFE 125 (237)
Q Consensus 95 ~~~~~~~~l~~l-~~~g~~v~i~s~~~~~~~~ 125 (237)
+.+++.++|+.| ++.|..++|+|++......
T Consensus 617 p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~ 648 (854)
T PLN02205 617 PSSKSIDILNTLCRDKNNMVFIVSARSRKTLA 648 (854)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHH
Confidence 445677788887 5567889999987666544
No 228
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=91.41 E-value=0.029 Score=49.50 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=28.9
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhh
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRE 133 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~g 133 (237)
.+|...+.+.+..++..|++++.+|+... .....+.+..|
T Consensus 589 dPPR~~vP~Av~~CrsAGIkvimVTgdhp-iTAkAiA~~vg 628 (1019)
T KOG0203|consen 589 DPPRAAVPDAVGKCRSAGIKVIMVTGDHP-ITAKAIAKSVG 628 (1019)
T ss_pred CCCcccCchhhhhhhhhCceEEEEecCcc-chhhhhhhhee
Confidence 46788889999999999999999998433 33333444434
No 229
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=91.37 E-value=0.1 Score=37.07 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=12.6
Q ss_pred cEEEEecCcccccchh
Q 026543 11 THVIFDMDGLLLDTEK 26 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~ 26 (237)
|+++||+||||+.+..
T Consensus 1 k~LVlDLD~TLv~~~~ 16 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSS 16 (159)
T ss_dssp EEEEEE-CTTTEEEES
T ss_pred CEEEEeCCCcEEEEee
Confidence 5899999999997653
No 230
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=90.82 E-value=2.7 Score=39.15 Aligned_cols=48 Identities=6% Similarity=0.010 Sum_probs=36.4
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcE-EEEecCHH-HHHHHHHcCCeEEEEc
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEI-LVFEDAPS-GVLAAKNAGMSVVMVP 200 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~-~~igD~~~-Di~~a~~~G~~~i~v~ 200 (237)
+..-.+..+++.+..+.| ++.+++ +|+|||-| |++....--.++|.+.
T Consensus 952 P~~ASKgqAlRyL~~rwg---i~l~~v~VfaGdSGntD~e~Ll~G~~~tvi~~ 1001 (1050)
T TIGR02468 952 PLLASRSQALRYLFVRWG---IELANMAVFVGESGDTDYEGLLGGLHKTVILK 1001 (1050)
T ss_pred eCCCCHHHHHHHHHHHcC---CChHHeEEEeccCCCCCHHHHhCCceeEEEEe
Confidence 344456899999999999 999999 55999998 9887744333455553
No 231
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=90.18 E-value=5.7 Score=31.28 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=53.0
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHH--hhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKT--QKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~--~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
..+.||+.+.+..|++.|..+.++||++........ .+.+|+.. +..+ ++ -.........+++..
T Consensus 37 ~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-----v~e~--~i---~ssa~~~a~ylk~~~--- 103 (306)
T KOG2882|consen 37 EKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-----VKEE--NI---FSSAYAIADYLKKRK--- 103 (306)
T ss_pred CCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-----cCcc--cc---cChHHHHHHHHHHhC---
Confidence 458999999999999999999999998765443222 22334331 1111 11 111223333444443
Q ss_pred CCCCcEEEEecCHHHHHHHHHcCCeEEEEcC
Q 026543 171 IDSQEILVFEDAPSGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~ 201 (237)
...+.+..+|-..- -+-..++|+...+...
T Consensus 104 ~~~k~Vyvig~~gi-~~eL~~aG~~~~g~~~ 133 (306)
T KOG2882|consen 104 PFGKKVYVIGEEGI-REELDEAGFEYFGGGP 133 (306)
T ss_pred cCCCeEEEecchhh-hHHHHHcCceeecCCC
Confidence 34566676764431 1345566665555443
No 232
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=89.47 E-value=1.9 Score=31.99 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=33.2
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHH--HHHhhhhhhhhhcceee
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFE--LKTQKHRELFSLMHHVV 142 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~--~~~~~~~gl~~~f~~~~ 142 (237)
..||+.+.+++|+.++.+|-.+||.+.+.-. ..-++++|+.-.-+.|+
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~ 73 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIF 73 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhc
Confidence 7899999999999999999999997654422 22344555543333444
No 233
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=89.11 E-value=1.3 Score=38.38 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHhCCCCEEEEeCChhhH--HHHHHhhhhhhhh--hcc-eeeeCCC-------CCccCCCCCH---HHHHH
Q 026543 97 PGASHLIRHLHAKGIPMCVATGSLARH--FELKTQKHRELFS--LMH-HVVRGDD-------PEVKQGKPSP---DIFLA 161 (237)
Q Consensus 97 ~~~~~~l~~l~~~g~~v~i~s~~~~~~--~~~~~~~~~gl~~--~f~-~~~~~~~-------~~~~~~kp~~---~~~~~ 161 (237)
.|+.++...++++||++..+|.+...+ ..+..++.+.=+. +-+ .++.+.+ -++...||.. ..+..
T Consensus 561 ~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~D 640 (738)
T KOG2116|consen 561 TGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTD 640 (738)
T ss_pred hhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHH
Confidence 466777788899999999998754322 2333343321111 011 1222210 0222334322 11222
Q ss_pred HHHHcCCCCCCCCc--EEEEecCHHHHHHHHHcCCe
Q 026543 162 AAKRFEGGPIDSQE--ILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 162 ~l~~~~~~~~~~~~--~~~igD~~~Di~~a~~~G~~ 195 (237)
+.+.+. +-.+ -..||++.+|+-.=+++|++
T Consensus 641 Ik~LF~----p~~nPFYAgFGNR~TDviSY~~VgVP 672 (738)
T KOG2116|consen 641 IKNLFP----PSGNPFYAGFGNRITDVISYRQVGVP 672 (738)
T ss_pred HHHhcC----CCCCceeeecCCCcccceeeeeecCC
Confidence 222222 2233 34478999999999999986
No 234
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=89.02 E-value=1.7 Score=39.00 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=25.9
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCCh
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSL 120 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~ 120 (237)
..++.+++++.++.|.+.+.+++.+|+.+
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDn 701 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITGDN 701 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeCCC
Confidence 36889999999999999999999999843
No 235
>PLN03017 trehalose-phosphatase
Probab=87.97 E-value=0.4 Score=38.98 Aligned_cols=69 Identities=9% Similarity=-0.155 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCC---CcEEEEecCHHHHHHHHHcC-C---eEEEEcCCCCCcccccchhhhhhhhcccCCC
Q 026543 153 KPSPDIFLAAAKRFEGGPIDS---QEILVFEDAPSGVLAAKNAG-M---SVVMVPDPRLDSSYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 153 kp~~~~~~~~l~~~~~~~~~~---~~~~~igD~~~Di~~a~~~G-~---~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~ 225 (237)
.-|..+.+.+++.++ ... .-.+||||..+|-.+++.+. . -+|.|..... ...|.+.+++.+|+..+
T Consensus 282 ~dKG~Av~~LL~~l~---~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG~~~k----~T~A~y~L~dp~eV~~f 354 (366)
T PLN03017 282 WDKGKALEFLLESLG---FGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVSKFPK----DTDASYSLQDPSEVMDF 354 (366)
T ss_pred CCHHHHHHHHHHhcc---cccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEECCCCC----CCcceEeCCCHHHHHHH
Confidence 456889999999998 553 35899999999988888662 1 2455542111 45677777777777665
Q ss_pred CCC
Q 026543 226 DWG 228 (237)
Q Consensus 226 l~~ 228 (237)
|..
T Consensus 355 L~~ 357 (366)
T PLN03017 355 LAR 357 (366)
T ss_pred HHH
Confidence 543
No 236
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=87.93 E-value=0.31 Score=37.43 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.8
Q ss_pred ccEEEEecCcccccc
Q 026543 10 ITHVIFDMDGLLLDT 24 (237)
Q Consensus 10 ~~~vifD~DGTL~~~ 24 (237)
-++++||+||||++.
T Consensus 3 ~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI 17 (244)
T ss_pred cEEEEEecCccccCC
Confidence 378999999999964
No 237
>PLN02151 trehalose-phosphatase
Probab=87.73 E-value=0.25 Score=39.95 Aligned_cols=67 Identities=12% Similarity=-0.094 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCCC---cEEEEecCHHHHHHHHHc-----CCeEEEEcCCCCCcccccchhhhhhhhcccCC
Q 026543 153 KPSPDIFLAAAKRFEGGPIDSQ---EILVFEDAPSGVLAAKNA-----GMSVVMVPDPRLDSSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 153 kp~~~~~~~~l~~~~~~~~~~~---~~~~igD~~~Di~~a~~~-----G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~ 224 (237)
..|..+...++++++ .... -.+||||..+|-.+++.+ |+ .|.|..+.. ...|.+.+++.+|+..
T Consensus 268 ~dKG~Av~~Ll~~~~---~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~-gI~Vg~~~k----~T~A~y~L~dp~eV~~ 339 (354)
T PLN02151 268 WDKGKALEFLLESLG---YANCTDVFPIYIGDDRTDEDAFKILRDKKQGL-GILVSKYAK----ETNASYSLQEPDEVME 339 (354)
T ss_pred CCHHHHHHHHHHhcc---cccCCCCeEEEEcCCCcHHHHHHHHhhcCCCc-cEEeccCCC----CCcceEeCCCHHHHHH
Confidence 356889999999988 5533 389999999998888755 32 344443221 4567777777777765
Q ss_pred CCC
Q 026543 225 KDW 227 (237)
Q Consensus 225 ~l~ 227 (237)
+|.
T Consensus 340 ~L~ 342 (354)
T PLN02151 340 FLE 342 (354)
T ss_pred HHH
Confidence 553
No 238
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=87.19 E-value=0.49 Score=27.55 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=17.5
Q ss_pred HHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHH
Q 026543 158 IFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKN 191 (237)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~ 191 (237)
-.+++++++| -.+++||+..|+++...
T Consensus 6 DVqQLLK~fG-------~~IY~gdr~~DielM~~ 32 (62)
T PF06014_consen 6 DVQQLLKKFG-------IIIYVGDRLWDIELMEI 32 (62)
T ss_dssp HHHHHHHTTS------------S-HHHHHHHHHH
T ss_pred HHHHHHHHCC-------EEEEeCChHHHHHHHHH
Confidence 3678899999 67999999999998753
No 239
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=86.84 E-value=9.5 Score=29.38 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=65.2
Q ss_pred CCCccHHHHH---HHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 94 ELMPGASHLI---RHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 94 ~~~~~~~~~l---~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
.+.|+..+++ +.|-+.|+.|.-+++.+.- ...+ +...|.... +-.++. ...+.+-.++..++.++++..
T Consensus 118 ~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v-~a~r-Led~Gc~aV--MPlgsP-IGSg~Gl~n~~~l~~i~e~~~--- 189 (267)
T CHL00162 118 YLLPDPIGTLKAAEFLVKKGFTVLPYINADPM-LAKH-LEDIGCATV--MPLGSP-IGSGQGLQNLLNLQIIIENAK--- 189 (267)
T ss_pred ccCCChHHHHHHHHHHHHCCCEEeecCCCCHH-HHHH-HHHcCCeEE--eeccCc-ccCCCCCCCHHHHHHHHHcCC---
Confidence 4667666666 5667889999999984443 3333 443443221 111111 012356678999999988877
Q ss_pred CCCCcEEEEecC---HHHHHHHHHcCCeEEEEcCCCC
Q 026543 171 IDSQEILVFEDA---PSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 171 ~~~~~~~~igD~---~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
++ +.+|-+ ++|+..|-+.|+..++++++-.
T Consensus 190 vp----VivdAGIgt~sDa~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 190 IP----VIIDAGIGTPSEASQAMELGASGVLLNTAVA 222 (267)
T ss_pred Cc----EEEeCCcCCHHHHHHHHHcCCCEEeecceee
Confidence 54 666644 4999999999999999988655
No 240
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=86.73 E-value=9.5 Score=29.01 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=57.9
Q ss_pred CCCCccHHHHH---HHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCC
Q 026543 93 SELMPGASHLI---RHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGG 169 (237)
Q Consensus 93 ~~~~~~~~~~l---~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~ 169 (237)
-.+.|+..+++ +.|-+.|+.|.-+++.+.- ...+ +...|.... +-.++.- ..+.+--++..++.++++.+
T Consensus 103 ~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v-~akr-L~d~Gcaav--MPlgsPI-GSg~Gi~n~~~l~~i~~~~~-- 175 (247)
T PF05690_consen 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPV-LAKR-LEDAGCAAV--MPLGSPI-GSGRGIQNPYNLRIIIERAD-- 175 (247)
T ss_dssp TT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HH-HHHH-HHHTT-SEB--EEBSSST-TT---SSTHHHHHHHHHHGS--
T ss_pred CCcCCChhHHHHHHHHHHHCCCEEeecCCCCHH-HHHH-HHHCCCCEE--Eeccccc-ccCcCCCCHHHHHHHHHhcC--
Confidence 34567776666 5667889999999984443 3333 343443221 1122210 22355678999999999998
Q ss_pred CCCCCcEEEEecC---HHHHHHHHHcCCeEEEEcCC
Q 026543 170 PIDSQEILVFEDA---PSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 170 ~~~~~~~~~igD~---~~Di~~a~~~G~~~i~v~~~ 202 (237)
++ +.|+-+ ++|...|-+.|+..+++++.
T Consensus 176 -vP----vIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 176 -VP----VIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp -SS----BEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred -Cc----EEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 76 566644 59999999999999999764
No 241
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=86.38 E-value=1.5 Score=33.98 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=30.1
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
+.+...+.++.++++|++++++|++...... .+++.+++.
T Consensus 21 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~-~~~~~l~~~ 60 (270)
T PRK10513 21 ISPAVKQAIAAARAKGVNVVLTTGRPYAGVH-RYLKELHME 60 (270)
T ss_pred cCHHHHHHHHHHHHCCCEEEEecCCChHHHH-HHHHHhCCC
Confidence 3455668889999999999999998877655 355656654
No 242
>PTZ00445 p36-lilke protein; Provisional
Probab=86.37 E-value=0.62 Score=34.64 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=14.3
Q ss_pred CCccEEEEecCccccc
Q 026543 8 KPITHVIFDMDGLLLD 23 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~ 23 (237)
..+|+|++|+|.||+.
T Consensus 41 ~GIk~Va~D~DnTlI~ 56 (219)
T PTZ00445 41 CGIKVIASDFDLTMIT 56 (219)
T ss_pred cCCeEEEecchhhhhh
Confidence 3589999999999997
No 243
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=85.94 E-value=1.5 Score=33.42 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHcCCCCCC---CCcEEEEecCHHHHHHHHHcCCe-----EEEEcCCCCCcccccchhhhhhh
Q 026543 154 PSPDIFLAAAKRFEGGPID---SQEILVFEDAPSGVLAAKNAGMS-----VVMVPDPRLDSSYHSNADQLLSS 218 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~---~~~~~~igD~~~Di~~a~~~G~~-----~i~v~~~~~~~~~~~~~~~~~~~ 218 (237)
.|..+.+.++++++ .. +.-++|+||..+|-.+.+.+.-. .+.|..... ......|.+.++|
T Consensus 165 ~KG~av~~ll~~~~---~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~~~-~~~~t~A~y~l~~ 233 (235)
T PF02358_consen 165 NKGSAVRRLLEELP---FAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSVSV-GEKPTAASYRLDD 233 (235)
T ss_dssp -HHHHHHHHHTTS------------EEEEESSHHHHHHHHTTTTS----EEEEES------------------
T ss_pred ChHHHHHHHHHhcC---ccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEeecc-ccccccccccccc
Confidence 36788999999998 65 78999999999999999887542 455544322 2234566666554
No 244
>PLN03017 trehalose-phosphatase
Probab=85.82 E-value=0.44 Score=38.71 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=10.8
Q ss_pred cEEEEecCcccc
Q 026543 11 THVIFDMDGLLL 22 (237)
Q Consensus 11 ~~vifD~DGTL~ 22 (237)
.+|++|+||||+
T Consensus 112 ~llflD~DGTL~ 123 (366)
T PLN03017 112 IVMFLDYDGTLS 123 (366)
T ss_pred eEEEEecCCcCc
Confidence 578889999999
No 245
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.65 E-value=1.4 Score=40.07 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=12.6
Q ss_pred ccEEEEecCcccccc
Q 026543 10 ITHVIFDMDGLLLDT 24 (237)
Q Consensus 10 ~~~vifD~DGTL~~~ 24 (237)
-++++||+||||...
T Consensus 507 ~rll~LDyDGTL~~~ 521 (797)
T PLN03063 507 NRLLILGFYGTLTEP 521 (797)
T ss_pred CeEEEEecCccccCC
Confidence 378999999999953
No 246
>PLN02151 trehalose-phosphatase
Probab=85.28 E-value=0.66 Score=37.57 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=10.9
Q ss_pred cEEEEecCcccc
Q 026543 11 THVIFDMDGLLL 22 (237)
Q Consensus 11 ~~vifD~DGTL~ 22 (237)
.++++|+||||.
T Consensus 99 ~ll~lDyDGTL~ 110 (354)
T PLN02151 99 IVMFLDYDGTLS 110 (354)
T ss_pred eEEEEecCccCC
Confidence 578889999999
No 247
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=85.26 E-value=1.5 Score=34.15 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=31.3
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhh
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSL 137 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~ 137 (237)
.+.+.++++.|+++|++++++|++....+. .+++.+|+..+
T Consensus 23 ~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~-~~~~~l~l~~~ 63 (273)
T PRK00192 23 YEPAKPALKALKEKGIPVIPCTSKTAAEVE-VLRKELGLEDP 63 (273)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHcCCCCC
Confidence 355778899999999999999998776655 45666676543
No 248
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=84.77 E-value=0.83 Score=33.53 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=20.5
Q ss_pred cEEEEecCcccccchhhHHHHHHHHHHH
Q 026543 11 THVIFDMDGLLLDTEKFYTEVQELILAR 38 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~~~~~~~~~~~~~ 38 (237)
-+++||+||||.........-+.+.+..
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~ 39 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFLQK 39 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHHHH
Confidence 4789999999998876655555555544
No 249
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=84.72 E-value=1.8 Score=32.82 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=30.6
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhh
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFS 136 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~ 136 (237)
.+...++++.|+++|++++++|++....+. .+++.+|+..
T Consensus 17 ~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~-~~~~~lg~~~ 56 (225)
T TIGR02461 17 PGPAREALEELKDLGFPIVFVSSKTRAEQE-YYREELGVEP 56 (225)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHHcCCCC
Confidence 345789999999999999999998776655 3566666543
No 250
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=84.57 E-value=3.3 Score=36.28 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=50.1
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh-hhc-ceeeeCCCCCccCCCCCHHHHHHHHHHcCCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF-SLM-HHVVRGDDPEVKQGKPSPDIFLAAAKRFEGG 169 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~-~~f-~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~ 169 (237)
.+++.|++.+||+.+.+. +.++|+|-+.+.+.. .+.+.+.-. .+| |.|++.+ +.+..| .+.-....
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~-~i~~liDP~~~lF~dRIisrd--e~~~~k--------t~dL~~~~ 266 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYAL-EIAKLIDPEGKYFGDRIISRD--ESPFFK--------TLDLVLLF 266 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHH-HHHHHhCCCCccccceEEEec--CCCccc--------ccccccCC
Confidence 378999999999999987 999999998887654 334432211 234 5777777 433222 22222200
Q ss_pred CCCCCcEEEEecCH
Q 026543 170 PIDSQEILVFEDAP 183 (237)
Q Consensus 170 ~~~~~~~~~igD~~ 183 (237)
+..++.++.|+|+.
T Consensus 267 p~g~smvvIIDDr~ 280 (635)
T KOG0323|consen 267 PCGDSMVVIIDDRS 280 (635)
T ss_pred CCCCccEEEEeCcc
Confidence 13344488888876
No 251
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=84.04 E-value=6.6 Score=31.31 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=54.0
Q ss_pred CCCCCccHHHHHHHHHhCC-CCEEEEeCChhhHHHHHHhhhhh-------------hhhhcceeeeCCCCCccCCCCCHH
Q 026543 92 TSELMPGASHLIRHLHAKG-IPMCVATGSLARHFELKTQKHRE-------------LFSLMHHVVRGDDPEVKQGKPSPD 157 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g-~~v~i~s~~~~~~~~~~~~~~~g-------------l~~~f~~~~~~~~~~~~~~kp~~~ 157 (237)
.-.++||+..+.+.|.+.| .++..+||+.-..+. .+-+.++ +...++.++.+. ... +..
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~-~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sg----a~r--K~~ 266 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFP-TLQEFITNRNFPYGPLLLRRWGGVLDNIIESG----AAR--KGQ 266 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHH-HHHHHHhcCCCCCCchhHhhcCCcccccccch----hhh--ccc
Confidence 3679999999999999987 899999996654433 1222211 112234444332 111 344
Q ss_pred HHHHHHHHcCCCCCCCCcEEEEecCH-HHHHH
Q 026543 158 IFLAAAKRFEGGPIDSQEILVFEDAP-SGVLA 188 (237)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~ 188 (237)
.+..++.++. ..+.+.|||+- .|.+.
T Consensus 267 ~l~nil~~~p-----~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 267 SLRNILRRYP-----DRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHHHHHHhCC-----CceEEEecCCCCcCHHH
Confidence 5666777776 56899999996 77653
No 252
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=83.83 E-value=1.8 Score=32.41 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=30.1
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
+.+...+.++.|+++|++++++|++...... .+.+.+++.
T Consensus 19 i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~-~~~~~l~~~ 58 (215)
T TIGR01487 19 ISERAIEAIRKAEKKGIPVSLVTGNTVPFAR-ALAVLIGTS 58 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCcchhHH-HHHHHhCCC
Confidence 5566778899999999999999998776654 345555543
No 253
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=82.78 E-value=2.1 Score=32.28 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=30.1
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFS 136 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~ 136 (237)
+.+...+.++.++++|++++++|++...... .+.+.+++..
T Consensus 21 i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~-~~~~~l~~~~ 61 (230)
T PRK01158 21 LSLKAVEAIRKAEKLGIPVILATGNVLCFAR-AAAKLIGTSG 61 (230)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHH-HHHHHhCCCC
Confidence 4456678888999999999999998776554 3455566543
No 254
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=82.68 E-value=2.7 Score=33.16 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=29.9
Q ss_pred CCCCCccHHHHHHHHHhCC-CCEEEEeCChhhHHH
Q 026543 92 TSELMPGASHLIRHLHAKG-IPMCVATGSLARHFE 125 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g-~~v~i~s~~~~~~~~ 125 (237)
++.++|.+-++++.+++.| .+++++||+....+.
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~ 124 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVL 124 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHHHH
Confidence 5789999999999999999 799999998885444
No 255
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=82.65 E-value=4.5 Score=29.64 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCEEEEeCChhhHHHHHHhhhh----hhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcE
Q 026543 101 HLIRHLHAKGIPMCVATGSLARHFELKTQKHR----ELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEI 176 (237)
Q Consensus 101 ~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~----gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~ 176 (237)
.++..++++|++++++.+.-.........+.. .+...||.+...+ +.-..-+.++| ++++++
T Consensus 109 nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs-----------~~da~r~~~lG---~~~~~v 174 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQS-----------EADAERFRKLG---APPERV 174 (186)
T ss_dssp HHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESS-----------HHHHHHHHTTT----S--SE
T ss_pred HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECC-----------HHHHHHHHHcC---CCcceE
Confidence 67888899999999998754433221111111 2446678887765 23455677899 999999
Q ss_pred EEEecCHHHH
Q 026543 177 LVFEDAPSGV 186 (237)
Q Consensus 177 ~~igD~~~Di 186 (237)
...||-.-|.
T Consensus 175 ~v~GnlKfd~ 184 (186)
T PF04413_consen 175 HVTGNLKFDQ 184 (186)
T ss_dssp EE---GGG--
T ss_pred EEeCcchhcc
Confidence 9999987664
No 256
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=82.02 E-value=2.4 Score=31.76 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 99 ASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 99 ~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
..+.++.++++|++++++||+....+. .+.+.+++.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~-~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVE-YLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHH-HHHHHcCCC
Confidence 568889999999999999998877655 456666664
No 257
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=80.96 E-value=12 Score=32.38 Aligned_cols=88 Identities=10% Similarity=-0.062 Sum_probs=49.1
Q ss_pred cHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEE
Q 026543 98 GASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEIL 177 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~ 177 (237)
++...|..+++.+-++++++......-...+.+.+++. +..+...+ .+-....++++. -.. --+
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~--i~~~~~~~----------~~e~~~~~~~l~---~~G-~~~ 148 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD--IVQRSYVT----------EEDARSCVNDLR---ARG-IGA 148 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecC----------HHHHHHHHHHHH---HCC-CCE
Confidence 44555555566677899998754443333344433332 12221111 222333333332 111 337
Q ss_pred EEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 178 VFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 178 ~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
+|||... ...|+++|+..+.+.++
T Consensus 149 viG~~~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 149 VVGAGLI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred EECChHH-HHHHHHcCCceEEEecH
Confidence 7899975 57899999999999875
No 258
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=80.92 E-value=1.1 Score=37.01 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=18.5
Q ss_pred CCCCcEE-EEecCHHHHHHHHHcCCe
Q 026543 171 IDSQEIL-VFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 171 ~~~~~~~-~igD~~~Di~~a~~~G~~ 195 (237)
+.+..-. -||+...|+.+-++.|++
T Consensus 491 ~e~~PFyAGFGNriTDvisY~~vgIp 516 (580)
T COG5083 491 IEFDPFYAGFGNRITDVISYSNVGIP 516 (580)
T ss_pred CcCChhhccccccchhheeeccccCC
Confidence 4555433 678889999998888875
No 259
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=80.92 E-value=2.8 Score=32.26 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=29.5
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
+.+...+.+++++++|++++++|++....+. .+.+.+++.
T Consensus 17 i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~-~~~~~~~~~ 56 (256)
T TIGR00099 17 ISPSTKEALAKLREKGIKVVLATGRPYKEVK-NILKELGLD 56 (256)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHcCCC
Confidence 4456678889999999999999998876554 345555543
No 260
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=80.70 E-value=3.3 Score=32.71 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFS 136 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~ 136 (237)
..+.+.+.|+.|+++|++++++|+.....+. .+.+.+++..
T Consensus 19 ~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~-~l~~~Lgl~~ 59 (302)
T PRK12702 19 SYGAARQALAALERRSIPLVLYSLRTRAQLE-HLCRQLRLEH 59 (302)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHhCCCC
Confidence 4455778899999999999999998776655 3566667654
No 261
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=80.32 E-value=2.7 Score=32.75 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=30.4
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
+.+..++.++.++++|++++++|++...... .+++.+++.
T Consensus 20 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~-~~~~~l~~~ 59 (272)
T PRK15126 20 LGEKTLSTLARLRERDITLTFATGRHVLEMQ-HILGALSLD 59 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHH-HHHHHcCCC
Confidence 4555678889999999999999998777655 455656654
No 262
>PRK10976 putative hydrolase; Provisional
Probab=80.10 E-value=2.7 Score=32.53 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=29.8
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
+.+...+.++.++++|++++++|++...... .+.+.+++.
T Consensus 20 is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~-~~~~~l~~~ 59 (266)
T PRK10976 20 LSPYAKETLKLLTARGIHFVFATGRHHVDVG-QIRDNLEIK 59 (266)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCChHHHH-HHHHhcCCC
Confidence 4455678889999999999999998776654 355555654
No 263
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=79.52 E-value=1.2 Score=34.64 Aligned_cols=47 Identities=11% Similarity=-0.069 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcC---CeEEEEcCCC
Q 026543 154 PSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAG---MSVVMVPDPR 203 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G---~~~i~v~~~~ 203 (237)
.+...+..++++.. ....-+++.||...|=.++..+. -.++.+..+.
T Consensus 182 ~KG~a~~~i~~~~~---~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~~~ 231 (266)
T COG1877 182 SKGAAIKYIMDELP---FDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVGVGS 231 (266)
T ss_pred chHHHHHHHHhcCC---CCCCcceecCCCCccHHHHHhhccCCCceEEecCCc
Confidence 36778888888888 66667999999998877877775 4455555443
No 264
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=79.41 E-value=5.3 Score=30.02 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeee
Q 026543 99 ASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVR 143 (237)
Q Consensus 99 ~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~ 143 (237)
+.++|..|++. +.|+++|+++...+...+. ...+...||.+++
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl~-~~~~~~~fdy~f~ 43 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQLG-GDDVLDNFDYVFP 43 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHHS-TTTHHHH-SEEEE
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHHc-ccchHhhCCeeec
Confidence 36788999987 9999999999888777654 1134556776664
No 265
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=79.30 E-value=26 Score=26.76 Aligned_cols=82 Identities=21% Similarity=0.193 Sum_probs=52.1
Q ss_pred CCCCEEEEeCChh---hHHHHHHhhhh-hhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-
Q 026543 109 KGIPMCVATGSLA---RHFELKTQKHR-ELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP- 183 (237)
Q Consensus 109 ~g~~v~i~s~~~~---~~~~~~~~~~~-gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~- 183 (237)
.++.+.+++.+.. +.........+ .+. .|.++... . ...-|-|..-+..++..| + .|+.|||.+
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~--pDf~i~is--P-N~a~PGP~~ARE~l~~~~---i---P~IvI~D~p~ 98 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWK--PDFVIVIS--P-NPAAPGPKKAREILKAAG---I---PCIVIGDAPG 98 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhC--CCEEEEEC--C-CCCCCCchHHHHHHHhcC---C---CEEEEcCCCc
Confidence 3788888887643 22221111110 122 34443322 1 235677888899999998 6 699999998
Q ss_pred -HHHHHHHHcCCeEEEEcC
Q 026543 184 -SGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 184 -~Di~~a~~~G~~~i~v~~ 201 (237)
-+-......|+..|.+..
T Consensus 99 ~K~~d~l~~~g~GYIivk~ 117 (277)
T PRK00994 99 KKVKDAMEEQGLGYIIVKA 117 (277)
T ss_pred cchHHHHHhcCCcEEEEec
Confidence 566888889999888864
No 266
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=79.09 E-value=7.7 Score=31.69 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=13.3
Q ss_pred CccEEEEecCcccccch
Q 026543 9 PITHVIFDMDGLLLDTE 25 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~ 25 (237)
..++|.||=|+||++..
T Consensus 146 ~L~LvTFDgDvTLY~DG 162 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDG 162 (408)
T ss_pred CceEEEEcCCcccccCC
Confidence 57888888888888543
No 267
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=78.79 E-value=4.4 Score=30.60 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=31.4
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
+.+...+.++.++++|++++++|++....+. .++..+++.
T Consensus 16 i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~-~~~~~~~~~ 55 (254)
T PF08282_consen 16 ISPETIEALKELQEKGIKLVIATGRSYSSIK-RLLKELGID 55 (254)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEECSSTHHHHH-HHHHHTTHC
T ss_pred eCHHHHHHHHhhcccceEEEEEccCcccccc-cccccccch
Confidence 6678889999999999999999998777654 455555554
No 268
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=78.73 E-value=3.7 Score=31.63 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=28.6
Q ss_pred cHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 98 GASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
...+.++.++++|++++++|++....+. .+++.+|+.
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~-~~~~~~~~~ 56 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVE-YLRKELGLE 56 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHH-HHHHHcCCC
Confidence 3678889999999999999998777655 456666653
No 269
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=78.73 E-value=1.4 Score=30.82 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=13.3
Q ss_pred cEEEEecCcccccch
Q 026543 11 THVIFDMDGLLLDTE 25 (237)
Q Consensus 11 ~~vifD~DGTL~~~~ 25 (237)
..+++|+||||+.+.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 579999999999875
No 270
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=78.38 E-value=3.9 Score=35.88 Aligned_cols=98 Identities=14% Similarity=0.060 Sum_probs=61.9
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhh--hcceeeeCC--C-------------CCccCCCCCH
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFS--LMHHVVRGD--D-------------PEVKQGKPSP 156 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~--~f~~~~~~~--~-------------~~~~~~kp~~ 156 (237)
++..+..+.+++...-|..|-++|+ ++-.+...-.+++|... |-..-..+. + ...+..--.|
T Consensus 492 pprhdsa~tirral~lGv~Vkmitg-dqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfp 570 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITG-DQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFP 570 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecc-hHHHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCH
Confidence 4577888899988899999999998 55544444444444221 110011110 0 0011222245
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCe
Q 026543 157 DIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~ 195 (237)
+..-.+.+++. -....|-|.||+.||..+.+.|...
T Consensus 571 ehKy~iV~~Lq---~r~hi~gmtgdgvndapaLKkAdig 606 (942)
T KOG0205|consen 571 EHKYEIVKILQ---ERKHIVGMTGDGVNDAPALKKADIG 606 (942)
T ss_pred HHHHHHHHHHh---hcCceecccCCCcccchhhcccccc
Confidence 55566777787 6777899999999999999999743
No 271
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=78.26 E-value=9.9 Score=30.35 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=53.8
Q ss_pred CCCCccHHHHHHHHHhC----CCCEEEEeCChhhHH---HHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHH
Q 026543 93 SELMPGASHLIRHLHAK----GIPMCVATGSLARHF---ELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKR 165 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~----g~~v~i~s~~~~~~~---~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~ 165 (237)
-.+.+++.+.++.|.++ .++.+.+||+..-.- ...+.+.+|+.-.-|.++-+. ..|+.+. +
T Consensus 50 ~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSH-----------sP~r~l~-~ 117 (389)
T KOG1618|consen 50 HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSH-----------SPFRLLV-E 117 (389)
T ss_pred CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhc-----------ChHHHHh-h
Confidence 45889999999999988 699999999764321 122233333332223333221 1234343 3
Q ss_pred cCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEE
Q 026543 166 FEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVM 198 (237)
Q Consensus 166 ~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~ 198 (237)
+ ..++++++|+.. -.+.|+..|++-+.
T Consensus 118 ~-----~~k~vLv~G~~~-vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 118 Y-----HYKRVLVVGQGS-VREVAEGYGFKNVV 144 (389)
T ss_pred h-----hhceEEEecCCc-HHHHhhccCcccee
Confidence 3 357999999654 44678888988554
No 272
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=77.16 E-value=17 Score=29.18 Aligned_cols=62 Identities=18% Similarity=0.108 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHhhcC-------CCCCCccHHHHHHHHHhCCC-CEEEEeCChhhHHHHHHhhhhhh
Q 026543 73 LSAEDFLVQREETLQTLFP-------TSELMPGASHLIRHLHAKGI-PMCVATGSLARHFELKTQKHREL 134 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~l~~~g~-~v~i~s~~~~~~~~~~~~~~~gl 134 (237)
++.+++........+-... ++.+.+++.++++.+++.++ .+.+-||+..-.-...-++..|+
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl 112 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGL 112 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCC
Confidence 4567777776666653222 47789999999999998754 46677787643333333555555
No 273
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=77.12 E-value=4 Score=31.65 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=29.3
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
+.+...+.++.++++|+.++++|++...... ...+.+++.
T Consensus 21 i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~-~~~~~l~~~ 60 (272)
T PRK10530 21 ILPESLEALARAREAGYKVIIVTGRHHVAIH-PFYQALALD 60 (272)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCChHHHH-HHHHhcCCC
Confidence 4445678889999999999999998776554 345555554
No 274
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=77.02 E-value=1.5 Score=31.38 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=13.1
Q ss_pred cEEEEecCcccccch
Q 026543 11 THVIFDMDGLLLDTE 25 (237)
Q Consensus 11 ~~vifD~DGTL~~~~ 25 (237)
+.+++|+|+||+.+.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 579999999999775
No 275
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=76.51 E-value=4.3 Score=30.41 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=27.7
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHREL 134 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl 134 (237)
+.+...+.++.++++|++++++|++....... +.+.+++
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~-~~~~l~~ 54 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSVQFARA-LAKLIGT 54 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHH-HHHHhCC
Confidence 34455677888999999999999977765543 4555553
No 276
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=76.28 E-value=33 Score=26.40 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=61.0
Q ss_pred CCCCccHHHHHHHHHhC---CCCEEEEeCChhhHHHHHHhhhhhhhhhcc--eeeeCCCCCccCCCCCHHHHHHHHHHcC
Q 026543 93 SELMPGASHLIRHLHAK---GIPMCVATGSLARHFELKTQKHRELFSLMH--HVVRGDDPEVKQGKPSPDIFLAAAKRFE 167 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~---g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~--~~~~~~~~~~~~~kp~~~~~~~~l~~~~ 167 (237)
-.+.|+..++++..+.- |+.+.-+++.+... ..+ +..+|.....- .-+++ +.+..+++.+..+.+..+
T Consensus 103 ~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~-ar~-l~~~G~~~vmPlg~pIGs-----g~Gi~~~~~I~~I~e~~~ 175 (248)
T cd04728 103 KTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVL-AKR-LEDAGCAAVMPLGSPIGS-----GQGLLNPYNLRIIIERAD 175 (248)
T ss_pred cccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHH-HHHcCCCEeCCCCcCCCC-----CCCCCCHHHHHHHHHhCC
Confidence 34688888888777765 99888444434432 223 33334322200 11221 234446888887777655
Q ss_pred CCCCCCCcEEEEe---cCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 168 GGPIDSQEILVFE---DAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 168 ~~~~~~~~~~~ig---D~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
++ +++| .++.|+..|.+.|...++|.++-.
T Consensus 176 ---vp----VI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 176 ---VP----VIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred ---Cc----EEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 43 5555 446999999999999999988655
No 277
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=76.04 E-value=4.9 Score=31.07 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=31.8
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFS 136 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~ 136 (237)
..+...+.++.++++|++++++|++...... .+.+.+++..
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~-~~~~~l~~~~ 61 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVL-SILEELGLDG 61 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChHHHH-HHHHHcCCCc
Confidence 6667788889999999999999998775444 5666666654
No 278
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=75.54 E-value=2.1 Score=30.41 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=14.6
Q ss_pred CccEEEEecCcccccchh
Q 026543 9 PITHVIFDMDGLLLDTEK 26 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~ 26 (237)
+-..+++|+|.||+.+..
T Consensus 5 ~kl~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTK 22 (156)
T ss_pred CceEEEEeCCCCcccccc
Confidence 346799999999998764
No 279
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=75.21 E-value=31 Score=25.56 Aligned_cols=107 Identities=8% Similarity=0.110 Sum_probs=52.9
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhh--hh---hhhcceeeeCCCCC----ccCCCCCHHHHHHHHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHR--EL---FSLMHHVVRGDDPE----VKQGKPSPDIFLAAAKR 165 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~--gl---~~~f~~~~~~~~~~----~~~~kp~~~~~~~~l~~ 165 (237)
....+.+.+..+..++-++.++-||........+...+ ++ ..-+..+..+++.. ....-.-...|.+-++.
T Consensus 26 ~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~ 105 (196)
T PRK10886 26 AISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRA 105 (196)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHH
Confidence 34455566666666778999998876544332222211 01 00111221111000 00111123445555555
Q ss_pred cCCCCCCCCcEE-EEe---cCH---HHHHHHHHcCCeEEEEcCCCCC
Q 026543 166 FEGGPIDSQEIL-VFE---DAP---SGVLAAKNAGMSVVMVPDPRLD 205 (237)
Q Consensus 166 ~~~~~~~~~~~~-~ig---D~~---~Di~~a~~~G~~~i~v~~~~~~ 205 (237)
+. ++.+++ +|. .+. .=++.|+..|+++|.++.....
T Consensus 106 ~~----~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s 148 (196)
T PRK10886 106 LG----HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_pred cC----CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 54 455544 453 333 3366778889999999875553
No 280
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=75.03 E-value=22 Score=30.91 Aligned_cols=88 Identities=14% Similarity=-0.011 Sum_probs=48.6
Q ss_pred cHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEE
Q 026543 98 GASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEIL 177 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~ 177 (237)
++...|...++.+-++++++-.....-...+.+.+++. +..+.... .-+......-+++.| + -+
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~--i~~~~~~~-------~~e~~~~v~~lk~~G---~----~~ 158 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR--IEQRSYVT-------EEDARGQINELKANG---I----EA 158 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecC-------HHHHHHHHHHHHHCC---C----CE
Confidence 45555555566677899998754443333344433331 11111111 001122223333444 3 36
Q ss_pred EEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 178 VFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 178 ~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
+|||+.. ...|.++|+..+++.++
T Consensus 159 vvG~~~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 159 VVGAGLI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred EEcCchH-HHHHHHhCCceEEecCH
Confidence 7899886 68999999999998754
No 281
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=74.62 E-value=43 Score=26.97 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=63.5
Q ss_pred CCCCccHHHHHHHHHhC---CCCEEEEeCChhhHHHHHHhhhhhhhhhcceeee-CCCCCccCCCCCHHHHHHHHHHcCC
Q 026543 93 SELMPGASHLIRHLHAK---GIPMCVATGSLARHFELKTQKHRELFSLMHHVVR-GDDPEVKQGKPSPDIFLAAAKRFEG 168 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~---g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~-~~~~~~~~~kp~~~~~~~~l~~~~~ 168 (237)
..+.|+..++++..+.- |+.+.++++.+..... + +..+|.. .+-. +.....+.+..+|+.++.+.+...
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~-~-l~~~g~~----avmPl~~pIGsg~gv~~p~~i~~~~e~~~- 249 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAK-R-LEDAGAV----AVMPLGAPIGSGLGIQNPYTIRLIVEGAT- 249 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH-H-HHhcCCE----EEeeccccccCCCCCCCHHHHHHHHHcCC-
Confidence 45678888888777766 9999566653443322 3 3333431 1111 220011234458999999988866
Q ss_pred CCCCCCcEEEEecC---HHHHHHHHHcCCeEEEEcCCCC
Q 026543 169 GPIDSQEILVFEDA---PSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 169 ~~~~~~~~~~igD~---~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
++ +++|-+ +.|+..|-..|+..++++++-.
T Consensus 250 --vp----VivdAGIg~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 250 --VP----VLVDAGVGTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred --Cc----EEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence 54 677755 4999999999999999988765
No 282
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=74.18 E-value=2.7 Score=31.95 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=7.4
Q ss_pred EEecCcccccch
Q 026543 14 IFDMDGLLLDTE 25 (237)
Q Consensus 14 ifD~DGTL~~~~ 25 (237)
+||+||||.+..
T Consensus 1 ~lDyDGTL~p~~ 12 (235)
T PF02358_consen 1 FLDYDGTLAPIV 12 (235)
T ss_dssp EEE-TTTSS---
T ss_pred CcccCCccCCCC
Confidence 689999999644
No 283
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=73.28 E-value=9.7 Score=27.54 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=48.1
Q ss_pred CCCccHHHHHHHHHh---CCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 94 ELMPGASHLIRHLHA---KGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~---~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
.......++++.|.+ .+-++++++....-.-...+.+.+|+ -+..... . +++-+...++++.
T Consensus 58 ~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~--~i~~~~~-~---------~~~e~~~~i~~~~--- 122 (176)
T PF06506_consen 58 EIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGV--DIKIYPY-D---------SEEEIEAAIKQAK--- 122 (176)
T ss_dssp EE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT---EEEEEEE-S---------SHHHHHHHHHHHH---
T ss_pred EECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCC--ceEEEEE-C---------CHHHHHHHHHHHH---
Confidence 344445555555544 46688888864443222233444333 1111111 1 2445666666653
Q ss_pred CCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCC
Q 026543 171 IDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~ 203 (237)
-+ .--++||++.. ...|++.|++++.+.++.
T Consensus 123 ~~-G~~viVGg~~~-~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 123 AE-GVDVIVGGGVV-CRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HT-T--EEEESHHH-HHHHHHTTSEEEESS--H
T ss_pred Hc-CCcEEECCHHH-HHHHHHcCCcEEEEEecH
Confidence 22 24477999875 688999999999987654
No 284
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=72.87 E-value=6.5 Score=30.61 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 97 PGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 97 ~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
+...+.++.++++|++++++|++....+. .+.+.+|+.
T Consensus 27 ~~~~~ai~~l~~~Gi~~viaTGR~~~~i~-~~~~~l~~~ 64 (271)
T PRK03669 27 QPAAPWLTRLREAQVPVILCSSKTAAEML-PLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHH-HHHHHhCCC
Confidence 44667889999999999999998877655 456666653
No 285
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=71.83 E-value=11 Score=29.70 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=13.8
Q ss_pred ccEEEEecCcccccch
Q 026543 10 ITHVIFDMDGLLLDTE 25 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~ 25 (237)
.++++||+||||.+..
T Consensus 158 ~~~~~~D~dgtl~~~~ 173 (300)
T PHA02530 158 PKAVIFDIDGTLAKMG 173 (300)
T ss_pred CCEEEEECCCcCcCCC
Confidence 5799999999999754
No 286
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=71.41 E-value=22 Score=28.25 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=27.5
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhh
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHR 132 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~ 132 (237)
.+|+..+-+.|++-|.++.++|+...........+..
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~ 98 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAA 98 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHH
Confidence 4689999999999999999999865544444444433
No 287
>PRK00208 thiG thiazole synthase; Reviewed
Probab=71.34 E-value=45 Score=25.72 Aligned_cols=96 Identities=13% Similarity=0.171 Sum_probs=59.7
Q ss_pred CCCccHHHHHHHHHhC---CCCEE-EEeCChhhHHHHHHhhhhhhhhhcc--eeeeCCCCCccCCCCCHHHHHHHHHHcC
Q 026543 94 ELMPGASHLIRHLHAK---GIPMC-VATGSLARHFELKTQKHRELFSLMH--HVVRGDDPEVKQGKPSPDIFLAAAKRFE 167 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~---g~~v~-i~s~~~~~~~~~~~~~~~gl~~~f~--~~~~~~~~~~~~~kp~~~~~~~~l~~~~ 167 (237)
.+.|+..++++..+.- |+.+. ++++ +..... + +..+|..-..- .-+++ +.+..+++.++.+.+..+
T Consensus 104 ~llpd~~~tv~aa~~L~~~Gf~vlpyc~~-d~~~ak-~-l~~~G~~~vmPlg~pIGs-----g~gi~~~~~i~~i~e~~~ 175 (250)
T PRK00208 104 TLLPDPIETLKAAEILVKEGFVVLPYCTD-DPVLAK-R-LEEAGCAAVMPLGAPIGS-----GLGLLNPYNLRIIIEQAD 175 (250)
T ss_pred CCCcCHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHH-H-HHHcCCCEeCCCCcCCCC-----CCCCCCHHHHHHHHHhcC
Confidence 4578888888777665 99888 5554 443322 3 33334322200 11222 234446777777777655
Q ss_pred CCCCCCCcEEEEec---CHHHHHHHHHcCCeEEEEcCCCC
Q 026543 168 GGPIDSQEILVFED---APSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 168 ~~~~~~~~~~~igD---~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
++ +++|- ++.|+..+.+.|+..++|.++-.
T Consensus 176 ---vp----VIveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 176 ---VP----VIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred ---Ce----EEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 43 55653 46999999999999999988665
No 288
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.49 E-value=6.7 Score=23.00 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=22.5
Q ss_pred HHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHH
Q 026543 159 FLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKN 191 (237)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~ 191 (237)
.+++++++| -++++||+..|+++.+.
T Consensus 7 VqQlLK~~G-------~ivyfg~r~~~iemm~~ 32 (68)
T COG4483 7 VQQLLKKFG-------IIVYFGKRLYDIEMMQI 32 (68)
T ss_pred HHHHHHHCC-------eeeecCCHHHHHHHHHH
Confidence 578899999 57999999999998764
No 289
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=70.16 E-value=41 Score=26.50 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 154 PSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
.+..-+..+.++.| . .++.| |+..||....-.|..+++|+.|..
T Consensus 225 SNs~rL~eiA~~~g---~---~aylI-d~~~ei~~~w~~~~~~VGvTAGAS 268 (294)
T COG0761 225 SNSNRLAEIAKRHG---K---PAYLI-DDAEEIDPEWLKGVKTVGVTAGAS 268 (294)
T ss_pred ccHHHHHHHHHHhC---C---CeEEe-CChHhCCHHHhcCccEEEEecCCC
Confidence 45667888888998 4 34444 678899988888999999998755
No 290
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=69.82 E-value=47 Score=25.36 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=65.5
Q ss_pred CCCCccHHHHH---HHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCC
Q 026543 93 SELMPGASHLI---RHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGG 169 (237)
Q Consensus 93 ~~~~~~~~~~l---~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~ 169 (237)
-.+.|+..+++ +.|-+.|+.|.-+++.+. ....+ +...|.....- .++. ...+.+--++..++.++++..
T Consensus 110 ~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~-v~arr-Lee~GcaavMP--l~aP-IGSg~G~~n~~~l~iiie~a~-- 182 (262)
T COG2022 110 KTLLPDPIETLKAAEQLVKEGFVVLPYTTDDP-VLARR-LEEAGCAAVMP--LGAP-IGSGLGLQNPYNLEIIIEEAD-- 182 (262)
T ss_pred cccCCChHHHHHHHHHHHhCCCEEeeccCCCH-HHHHH-HHhcCceEecc--cccc-ccCCcCcCCHHHHHHHHHhCC--
Confidence 45677777766 456678999999998443 33333 33334322111 1111 012345668999999999998
Q ss_pred CCCCCcEEEEecC---HHHHHHHHHcCCeEEEEcCCCC
Q 026543 170 PIDSQEILVFEDA---PSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 170 ~~~~~~~~~igD~---~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
++ +.|+-+ ++|...|-+.|+..+++++.-.
T Consensus 183 -VP----viVDAGiG~pSdAa~aMElG~DaVL~NTAiA 215 (262)
T COG2022 183 -VP----VIVDAGIGTPSDAAQAMELGADAVLLNTAIA 215 (262)
T ss_pred -CC----EEEeCCCCChhHHHHHHhcccceeehhhHhh
Confidence 76 666654 5999999999999999976543
No 291
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.72 E-value=2.7 Score=35.33 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=12.7
Q ss_pred ccEEEEecCccccc
Q 026543 10 ITHVIFDMDGLLLD 23 (237)
Q Consensus 10 ~~~vifD~DGTL~~ 23 (237)
.|++++|+|+|||-
T Consensus 222 kK~LVLDLDNTLWG 235 (574)
T COG3882 222 KKALVLDLDNTLWG 235 (574)
T ss_pred cceEEEecCCcccc
Confidence 58999999999994
No 292
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=68.89 E-value=7 Score=33.00 Aligned_cols=20 Identities=35% Similarity=0.306 Sum_probs=13.6
Q ss_pred CCCccEEEEecCcccccchh
Q 026543 7 KKPITHVIFDMDGLLLDTEK 26 (237)
Q Consensus 7 ~~~~~~vifD~DGTL~~~~~ 26 (237)
+..+++|-||+|-||..-..
T Consensus 9 l~~i~~iGFDmDyTLa~Y~~ 28 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYKS 28 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-C
T ss_pred cccCCEEEECcccchhhcCH
Confidence 56799999999999996554
No 293
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=68.37 E-value=9.8 Score=30.63 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=27.1
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
++.+.|.+.++++.++++|+.+.+.||+...
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 4557889999999999999999999998664
No 294
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=68.22 E-value=26 Score=29.17 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=22.6
Q ss_pred CCCCcEEEEecCH--HHHHHHHHcCCeEEEEcC
Q 026543 171 IDSQEILVFEDAP--SGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 171 ~~~~~~~~igD~~--~Di~~a~~~G~~~i~v~~ 201 (237)
++|++++|-|... .+++.|.+.|+.++-|.+
T Consensus 94 ~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS 126 (394)
T COG0019 94 FPPERIVFSGPAKSEEEIAFALELGIKLINVDS 126 (394)
T ss_pred CChhhEEECCCCCCHHHHHHHHHcCCcEEEeCC
Confidence 7888888877665 777778888877666543
No 295
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=68.21 E-value=44 Score=25.62 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=48.7
Q ss_pred CCCCEEEEeCChhhH---HHHHHhhhh-hhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-
Q 026543 109 KGIPMCVATGSLARH---FELKTQKHR-ELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP- 183 (237)
Q Consensus 109 ~g~~v~i~s~~~~~~---~~~~~~~~~-gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~- 183 (237)
.++.+.+++.+..-. ......+.+ .+..-|-.+++.+ ...|-|..-+.+++..+ + .|+.|||.+
T Consensus 29 edI~vrv~gsGaKm~pe~~e~~~~~~~~~~~pdf~I~isPN-----~~~PGP~~ARE~l~~~~---i---P~IvI~D~p~ 97 (276)
T PF01993_consen 29 EDIDVRVVGSGAKMGPEDVEEVVTKMLKEWDPDFVIVISPN-----AAAPGPTKAREMLSAKG---I---PCIVISDAPT 97 (276)
T ss_dssp SSEEEEEEEEET--SHHHHHHHHHHHHHHH--SEEEEE-S------TTSHHHHHHHHHHHHSS---S----EEEEEEGGG
T ss_pred CCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCC-----CCCCCcHHHHHHHHhCC---C---CEEEEcCCCc
Confidence 367788888754321 222111211 2333333334333 45677888888988888 5 599999998
Q ss_pred -HHHHHHHHcCCeEEEEcC
Q 026543 184 -SGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 184 -~Di~~a~~~G~~~i~v~~ 201 (237)
-.-......|+..|.+..
T Consensus 98 ~k~kd~l~~~g~GYIivk~ 116 (276)
T PF01993_consen 98 KKAKDALEEEGFGYIIVKA 116 (276)
T ss_dssp GGGHHHHHHTT-EEEEETT
T ss_pred hhhHHHHHhcCCcEEEEec
Confidence 456788889999998864
No 296
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=68.04 E-value=9 Score=31.18 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=44.5
Q ss_pred HHHhC-CCC-EEEEeCChh-hHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHH---HHHHHHHcCCCCCCCCcEEE
Q 026543 105 HLHAK-GIP-MCVATGSLA-RHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDI---FLAAAKRFEGGPIDSQEILV 178 (237)
Q Consensus 105 ~l~~~-g~~-v~i~s~~~~-~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~---~~~~l~~~~~~~~~~~~~~~ 178 (237)
.|+++ ++. ..|+|+... ......+.+.+++ ...+..+..+ .....+--... +..++++. +|+-+++
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i-~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-----~Pd~Vlv 73 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGI-PKPDYLLDSD--SQSMAKSTGLAIIELADVLERE-----KPDAVLV 73 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT---SEEEE--ST--TS-HHHHHHHHHHHHHHHHHHH-----T-SEEEE
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCC-CCCCcccccc--cchHHHHHHHHHHHHHHHHHhc-----CCCEEEE
Confidence 34554 443 456666542 3344445555555 4556665544 21111111222 33344444 4899999
Q ss_pred EecCHHHHH---HHHHcCCeEEEEcCC
Q 026543 179 FEDAPSGVL---AAKNAGMSVVMVPDP 202 (237)
Q Consensus 179 igD~~~Di~---~a~~~G~~~i~v~~~ 202 (237)
.||+..=+. +|...+++.+.+.-|
T Consensus 74 ~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 74 LGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp ETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred EcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 999985544 555669999999887
No 297
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=66.71 E-value=59 Score=25.26 Aligned_cols=99 Identities=10% Similarity=0.040 Sum_probs=52.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEE-EEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCC-CCCH---HHHHHHHHHcC
Q 026543 93 SELMPGASHLIRHLHAKGIPMC-VATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQG-KPSP---DIFLAAAKRFE 167 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~-i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~-kp~~---~~~~~~l~~~~ 167 (237)
..+.+...++++.++++|...+ +++-.+.......+.+ ...-|-.+++... ..+.. .-.+ +.+..+.+..+
T Consensus 123 Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~---~~~gfiy~vs~~G-~TG~~~~~~~~~~~~i~~lr~~~~ 198 (256)
T TIGR00262 123 DLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAE---KSQGFVYLVSRAG-VTGARNRAASALNELVKRLKAYSA 198 (256)
T ss_pred CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHH---hCCCCEEEEECCC-CCCCcccCChhHHHHHHHHHhhcC
Confidence 3455778899999999998865 4544333222222333 2232334443320 11111 1112 22222322223
Q ss_pred CCCCCCCcEEEEec---CHHHHHHHHHcCCeEEEEcCC
Q 026543 168 GGPIDSQEILVFED---APSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 168 ~~~~~~~~~~~igD---~~~Di~~a~~~G~~~i~v~~~ 202 (237)
. -+++|= +..++..+..+|...+.|.+.
T Consensus 199 ---~----pi~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 199 ---K----PVLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred ---C----CEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 2 366664 357999999999998888654
No 298
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.76 E-value=63 Score=26.95 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=34.5
Q ss_pred hhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHH
Q 026543 136 SLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAK 190 (237)
Q Consensus 136 ~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~ 190 (237)
+-||.|+.- ..+..+-....+....+--+. +.|+++++|=|..-.-.+..
T Consensus 182 e~fdvIIvD---TSGRh~qe~sLfeEM~~v~~a--i~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 182 ENFDVIIVD---TSGRHKQEASLFEEMKQVSKA--IKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred cCCcEEEEe---CCCchhhhHHHHHHHHHHHhh--cCCCeEEEEEeccccHhHHH
Confidence 346666543 456777788888887765543 78999999999875544443
No 299
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=65.16 E-value=14 Score=26.00 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGD 145 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~ 145 (237)
..+.+.++++.+++.|+++.+.||+........+ ...+|.++-+.
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~i------l~~iD~l~~g~ 117 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPKDIPLEL------VQHLDYLKTGR 117 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH------HHhCCEEEECh
Confidence 3456889999999999999999986554332222 34456666543
No 300
>PTZ00174 phosphomannomutase; Provisional
Probab=64.94 E-value=12 Score=28.77 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFE 125 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~ 125 (237)
+.+...+.++.++++|+.++++|++....+.
T Consensus 23 is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~ 53 (247)
T PTZ00174 23 ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIK 53 (247)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 3445678889999999999999997766543
No 301
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=63.23 E-value=61 Score=24.21 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=57.4
Q ss_pred cHHHHHHHHHhCCCCEEEEeCChhhHHHHHHh-hhhhhhhhcceeeeCCCCCccCC--------CCCHHHHHHHHHHcCC
Q 026543 98 GASHLIRHLHAKGIPMCVATGSLARHFELKTQ-KHRELFSLMHHVVRGDDPEVKQG--------KPSPDIFLAAAKRFEG 168 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~-~~~gl~~~f~~~~~~~~~~~~~~--------kp~~~~~~~~l~~~~~ 168 (237)
.+.+++..--.++-++.++..+........+. +..||.. ...|++.. -+-.. ......-...+.+++
T Consensus 26 kaa~lVAesi~n~g~i~~FG~GHShm~aeEv~yRAGGLa~-~~pIL~~p--lMLhega~ass~lErieg~~~~~l~~~~- 101 (243)
T COG4821 26 KAAKLVAESIMNDGRIYVFGSGHSHMLAEEVFYRAGGLAP-IKPILMEP--LMLHEGAVASSYLERIEGYAKLFLHRLQ- 101 (243)
T ss_pred HHHHHHHHHHhcCCEEEEecCchHHHHHHHHHhhcCCccc-cccccCCh--hhhcccccccchhHhhhhHHHHHHHHhc-
Confidence 44566666666777788887666555444333 3344432 23333322 11111 111223455788899
Q ss_pred CCCCCCcEEEE----ecCHHHHHHHH---HcCCeEEEEcCCCC
Q 026543 169 GPIDSQEILVF----EDAPSGVLAAK---NAGMSVVMVPDPRL 204 (237)
Q Consensus 169 ~~~~~~~~~~i----gD~~~Di~~a~---~~G~~~i~v~~~~~ 204 (237)
+.+.++++| |-.+.-+++|. +-|++.|.+++=..
T Consensus 102 --i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl~y 142 (243)
T COG4821 102 --IRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSLDY 142 (243)
T ss_pred --CCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehhhh
Confidence 999998887 44455666654 45999999876443
No 302
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=62.52 E-value=12 Score=29.91 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEE
Q 026543 100 SHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVF 179 (237)
Q Consensus 100 ~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~i 179 (237)
.++|++|+++|+.++.+|= ....- -.+-....+.-+...=++ ....++ + -..+++.-. -...+++.|
T Consensus 189 ~~LL~kLk~kGv~~afvTL-HVGaG---TF~pV~~~~i~eH~MH~E--~~~v~~---e-ta~~i~~~k---~~GgRIiaV 255 (348)
T COG0809 189 EELLEKLKAKGVEIAFVTL-HVGAG---TFRPVKVENIEEHKMHSE--YYEVPQ---E-TADAINAAK---ARGGRIIAV 255 (348)
T ss_pred HHHHHHHHHCCceEEEEEE-Eeccc---ccccceeccccccccchh--heecCH---H-HHHHHHHHH---HcCCeEEEE
Confidence 6899999999999988883 11100 000000111111222111 111111 1 122222222 334699999
Q ss_pred ecCH-HHHHHHHHc-------CCeEEEEcCCCCCcccccchhhhhhhhc
Q 026543 180 EDAP-SGVLAAKNA-------GMSVVMVPDPRLDSSYHSNADQLLSSLL 220 (237)
Q Consensus 180 gD~~-~Di~~a~~~-------G~~~i~v~~~~~~~~~~~~~~~~~~~~~ 220 (237)
|-+. .-++.|... |+..|.+..|+. ....|..+++|.
T Consensus 256 GTTs~R~LEsa~~~~~~~~~sg~T~IFI~PGy~----~~~vD~LiTNFH 300 (348)
T COG0809 256 GTTSVRTLESAAREAGLKAFSGWTDIFIYPGYR----FKVVDALITNFH 300 (348)
T ss_pred cchhHHHHHHHhcccCcCcCcCcccEEEcCCCc----ceeeeeeeecCc
Confidence 9887 888888764 466777777765 334444444443
No 303
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=62.34 E-value=26 Score=25.99 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=50.6
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH--HHHHHHHH-cCCeEEEEcCCCCCcccccchhhhhhhhcccCC
Q 026543 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP--SGVLAAKN-AGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNP 224 (237)
Q Consensus 149 ~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~--~Di~~a~~-~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~ 224 (237)
.+.+| ...+.++++.+. -..+=++.-||-. +|-+..++ .|.+++.|.+|.... ..+......++++..
T Consensus 22 ~GSGK--TaLie~~~~~L~---~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH---~da~m~~~ai~~l~~ 92 (202)
T COG0378 22 PGSGK--TALIEKTLRALK---DEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCH---LDASMNLEAIEELVL 92 (202)
T ss_pred CCcCH--HHHHHHHHHHHH---hhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccC---CcHHHHHHHHHHHhh
Confidence 45555 888999999997 5666777789976 79999999 999999999987652 344455555555543
No 304
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=60.97 E-value=73 Score=26.31 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHhhc-------CCCCCCccHHHHHHHHHhC-CCC-EEEEeCChh
Q 026543 73 LSAEDFLVQREETLQTLF-------PTSELMPGASHLIRHLHAK-GIP-MCVATGSLA 121 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l~~~-g~~-v~i~s~~~~ 121 (237)
++.+++............ -++.+.+++.++++.+++. |+. +.+.||+..
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~~gi~~i~itTNG~l 147 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT 147 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCceEEEeeCcch
Confidence 445555555444333222 2456688899999999886 775 888999754
No 305
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=60.93 E-value=57 Score=26.51 Aligned_cols=99 Identities=16% Similarity=0.080 Sum_probs=49.7
Q ss_pred HHHHHHHHHhC-CC-CEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcE
Q 026543 99 ASHLIRHLHAK-GI-PMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEI 176 (237)
Q Consensus 99 ~~~~l~~l~~~-g~-~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~ 176 (237)
+..+++.|+++ ++ ...++|+.... ....+.+.+++...++..+.+. .....+-....+..+.+-+.. ..|+=+
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~-~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~--~~pDiv 90 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHRE-MLDQVLDLFHLPPDYDLNIMSP--GQTLGEITSNMLEGLEELLLE--EKPDIV 90 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHH-HHHHHHHhcCCCCCeeeecCCC--CCCHHHHHHHHHHHHHHHHHH--cCCCEE
Confidence 35677888775 33 35677775543 3334454455542222222221 111111112222222222221 347777
Q ss_pred EEEecCHHH---HHHHHHcCCeEEEEcCC
Q 026543 177 LVFEDAPSG---VLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 177 ~~igD~~~D---i~~a~~~G~~~i~v~~~ 202 (237)
+..||+..- ..+|...|++.+.+..+
T Consensus 91 ~~~gd~~~~la~a~aa~~~~ipv~h~~~g 119 (365)
T TIGR00236 91 LVQGDTTTTLAGALAAFYLQIPVGHVEAG 119 (365)
T ss_pred EEeCCchHHHHHHHHHHHhCCCEEEEeCC
Confidence 778997643 45667779998877544
No 306
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=57.17 E-value=5.9 Score=36.66 Aligned_cols=45 Identities=4% Similarity=-0.037 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHcCCC---CCCCCcEEEEecC---HHHHHHHHHcCCe
Q 026543 151 QGKPSPDIFLAAAKRFEGG---PIDSQEILVFEDA---PSGVLAAKNAGMS 195 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~~~~---~~~~~~~~~igD~---~~Di~~a~~~G~~ 195 (237)
.+..|..+...+++++... .-+++=++++||. ..|+=.+.....+
T Consensus 765 ~gvnKG~Av~~ll~~~~~~~~~~~~~DFvlc~GDd~~~DEdmF~~l~~~~~ 815 (934)
T PLN03064 765 VGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDIYTFFEPELP 815 (934)
T ss_pred CCCCHHHHHHHHHHhhhhccccCCCCCEEEEeCCCCCCcHHHHHHHhccCC
Confidence 3445688888888876310 0346779999994 3555555554444
No 307
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=56.86 E-value=12 Score=28.69 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=25.9
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
+.+.+++.++++.+++.|+++.+.||+...
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 445678999999999999999999998764
No 308
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=56.85 E-value=14 Score=30.21 Aligned_cols=43 Identities=23% Similarity=0.198 Sum_probs=29.6
Q ss_pred HHHHHHHHHHc----CCCCCCCCcEEEEecCH-----HHHHHHHHcCCeEEEEcCCC
Q 026543 156 PDIFLAAAKRF----EGGPIDSQEILVFEDAP-----SGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 156 ~~~~~~~l~~~----~~~~~~~~~~~~igD~~-----~Di~~a~~~G~~~i~v~~~~ 203 (237)
..+...+.+-+ + +.++++++|||-. ||. .|+.+| .++||+++.
T Consensus 351 s~GV~~lQ~y~~~~~~---i~~~~tLHVGDQF~s~GaNDf-kaR~a~-~t~WIasP~ 402 (408)
T PF06437_consen 351 SLGVRALQKYFDPEGG---IKPSETLHVGDQFLSAGANDF-KARLAC-TTAWIASPQ 402 (408)
T ss_pred HHhHHHHHHHHHhccC---CCccceeeehhhhhccCCcch-hhhhhc-eeeEecCHH
Confidence 44555555555 5 9999999999964 675 455555 568887653
No 309
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=55.56 E-value=10 Score=29.43 Aligned_cols=93 Identities=11% Similarity=0.158 Sum_probs=55.7
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhh-hhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHREL-FSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl-~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
+.-+|++.++|....+. +.+.+.|.+...+ ..+++..+.- ...+...+.-+.+... ...|-+-+..++ -
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Y-a~~v~D~LD~~~~i~~~RlyR~~C~~~-----~g~yvKdls~~~---~ 199 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVY-ADPLLDILDPDRKIISHRLYRDSCTLK-----DGNYVKDLSVLG---R 199 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHH-HHHHHHHccCCCCeeeeeecccceEeE-----CCcEEEEcceec---c
Confidence 56788899999888887 7888888754443 3344444221 1112222222200000 111222335677 7
Q ss_pred CCCcEEEEecCHHHHHHHHHcCCe
Q 026543 172 DSQEILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 172 ~~~~~~~igD~~~Di~~a~~~G~~ 195 (237)
+.++++.|+|++.-..+=-+.|++
T Consensus 200 dL~~viIiDNsP~sy~~~p~NgIp 223 (262)
T KOG1605|consen 200 DLSKVIIVDNSPQSYRLQPENGIP 223 (262)
T ss_pred CcccEEEEcCChHHhccCccCCCc
Confidence 888999999999998888888844
No 310
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=55.12 E-value=21 Score=27.33 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhh
Q 026543 97 PGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHREL 134 (237)
Q Consensus 97 ~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl 134 (237)
|.+.++++.++++|+.++++|++....+. .+.+.+++
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~-~~~~~~~~ 60 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYK-ELQKQKPL 60 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHH-HHHhcCCC
Confidence 44556777788888889999987766554 34444444
No 311
>PRK08005 epimerase; Validated
Probab=55.10 E-value=88 Score=23.51 Aligned_cols=100 Identities=10% Similarity=0.049 Sum_probs=58.8
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeee--CCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVR--GDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~--~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
.+..+...++++.+++.|.+.++.=|..... . .+.. +....|.+.. .+ +..+-.+-.+..+.++.+-..
T Consensus 89 ~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~-~-~i~~---~l~~vD~VlvMsV~-PGf~GQ~f~~~~~~KI~~l~~--- 159 (210)
T PRK08005 89 AESVQNPSEILADIRAIGAKAGLALNPATPL-L-PYRY---LALQLDALMIMTSE-PDGRGQQFIAAMCEKVSQSRE--- 159 (210)
T ss_pred ccCccCHHHHHHHHHHcCCcEEEEECCCCCH-H-HHHH---HHHhcCEEEEEEec-CCCccceecHHHHHHHHHHHH---
Confidence 3444567889999999999999998854432 2 1122 2334565432 22 012223344556666554333
Q ss_pred CCCCcEEEEecCH--HHHHHHHHcCCeEEEEcC
Q 026543 171 IDSQEILVFEDAP--SGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 171 ~~~~~~~~igD~~--~Di~~a~~~G~~~i~v~~ 201 (237)
..++.-+.|+-+. ..+....++|...+.+.+
T Consensus 160 ~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~Gs 192 (210)
T PRK08005 160 HFPAAECWADGGITLRAARLLAAAGAQHLVIGR 192 (210)
T ss_pred hcccCCEEEECCCCHHHHHHHHHCCCCEEEECh
Confidence 2222237776655 778888999999776654
No 312
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=54.67 E-value=1.5e+02 Score=26.00 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCCcEEEEecCH-HHHHHHHHc----CCeEEEEcCC
Q 026543 172 DSQEILVFEDAP-SGVLAAKNA----GMSVVMVPDP 202 (237)
Q Consensus 172 ~~~~~~~igD~~-~Di~~a~~~----G~~~i~v~~~ 202 (237)
..+-++.||-+. .|+..+..+ |++.|.|++.
T Consensus 269 r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPTT 304 (542)
T PRK14021 269 RSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPTS 304 (542)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCCh
Confidence 345567798865 999888774 9999999873
No 313
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=54.39 E-value=1e+02 Score=23.96 Aligned_cols=100 Identities=9% Similarity=0.121 Sum_probs=53.6
Q ss_pred HHHHHHhCCCCEEEEeCChhhHHHH----HHhhhhhhh-hhcceeeeCCCCC----ccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 102 LIRHLHAKGIPMCVATGSLARHFEL----KTQKHRELF-SLMHHVVRGDDPE----VKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 102 ~l~~l~~~g~~v~i~s~~~~~~~~~----~~~~~~gl~-~~f~~~~~~~~~~----~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
+.+.++ +|-+++++..+....... .....+|.. ..+..++.+.+.. ......+++.....+...+ +.
T Consensus 42 ~~~~l~-~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~---l~ 117 (257)
T cd05007 42 AAERLR-AGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAIN---LT 117 (257)
T ss_pred HHHHHH-cCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcC---CC
Confidence 444444 456787777765544331 112222331 2233444333100 1122234556666777777 77
Q ss_pred CCcEEEE----ecCH---HHHHHHHHcCCeEEEEcCCCCC
Q 026543 173 SQEILVF----EDAP---SGVLAAKNAGMSVVMVPDPRLD 205 (237)
Q Consensus 173 ~~~~~~i----gD~~---~Di~~a~~~G~~~i~v~~~~~~ 205 (237)
+++++++ |.++ .=++.|++.|++++.++.....
T Consensus 118 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s 157 (257)
T cd05007 118 ERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGS 157 (257)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 7776644 3444 5567778889999999875543
No 314
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=54.24 E-value=84 Score=23.00 Aligned_cols=91 Identities=18% Similarity=0.137 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHhC--CCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCC
Q 026543 97 PGASHLIRHLHAK--GIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQ 174 (237)
Q Consensus 97 ~~~~~~l~~l~~~--g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~ 174 (237)
..+..+++.|+++ +.++.+-|...... . ...+. +.+.....+. +-..+......+++.. |+
T Consensus 35 ~a~~~Li~~l~~~~p~~~illT~~T~tg~-~-~~~~~--~~~~v~~~~~--------P~D~~~~~~rfl~~~~-----P~ 97 (186)
T PF04413_consen 35 NAARPLIKRLRKQRPDLRILLTTTTPTGR-E-MARKL--LPDRVDVQYL--------PLDFPWAVRRFLDHWR-----PD 97 (186)
T ss_dssp HHHHHHHHHHTT---TS-EEEEES-CCHH-H-HHHGG---GGG-SEEE-----------SSHHHHHHHHHHH-------S
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCchH-H-HHHHh--CCCCeEEEEe--------CccCHHHHHHHHHHhC-----CC
Confidence 3566788888876 67777666633322 1 11222 1222222221 2235778899999887 88
Q ss_pred cEEEEecCH--HHHHHHHHcCCeEEEEcCCCC
Q 026543 175 EILVFEDAP--SGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 175 ~~~~igD~~--~Di~~a~~~G~~~i~v~~~~~ 204 (237)
-+++++-.. |=+..+++.|++.++|+-...
T Consensus 98 ~~i~~EtElWPnll~~a~~~~ip~~LvNarls 129 (186)
T PF04413_consen 98 LLIWVETELWPNLLREAKRRGIPVVLVNARLS 129 (186)
T ss_dssp EEEEES----HHHHHH-----S-EEEEEE---
T ss_pred EEEEEccccCHHHHHHHhhcCCCEEEEeeeec
Confidence 999998775 888999999999999975443
No 315
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=54.20 E-value=98 Score=23.75 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=51.6
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhhH-HHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCC
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLARH-FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQ 174 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~~-~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~ 174 (237)
.+...++++.++++|.+.+++-+..... ....+++ ..+.|=. .+... ..+. + ........++++.. ..++
T Consensus 115 ~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~---~~~~~l~-msv~~-~~g~-~-~~~~~~~~i~~lr~--~~~~ 185 (244)
T PRK13125 115 PDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK---LSPLFIY-YGLRP-ATGV-P-LPVSVERNIKRVRN--LVGN 185 (244)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH---hCCCEEE-EEeCC-CCCC-C-chHHHHHHHHHHHH--hcCC
Confidence 3577889999999999988888754322 1122222 1221111 12220 1111 2 22222222222221 2223
Q ss_pred cEEEEecCH---HHHHHHHHcCCeEEEEcCC
Q 026543 175 EILVFEDAP---SGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 175 ~~~~igD~~---~Di~~a~~~G~~~i~v~~~ 202 (237)
..+.+|=+. .++..+..+|...+.+.+.
T Consensus 186 ~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSa 216 (244)
T PRK13125 186 KYLVVGFGLDSPEDARDALSAGADGVVVGTA 216 (244)
T ss_pred CCEEEeCCcCCHHHHHHHHHcCCCEEEECHH
Confidence 346776544 7888888999998888653
No 316
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=54.18 E-value=30 Score=25.16 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=25.6
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
+.+.+.+.++++.+++.|+.+.+.||+...
T Consensus 73 Pll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 73 PTLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred ccCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 556677899999999999999999998754
No 317
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=53.61 E-value=1.1e+02 Score=24.19 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=25.2
Q ss_pred CCCCCccHHHHHHHHHhCCC-CEEEEeCChh
Q 026543 92 TSELMPGASHLIRHLHAKGI-PMCVATGSLA 121 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~-~v~i~s~~~~ 121 (237)
++.+.+++.++++.+++.|+ .+.+.||+..
T Consensus 66 EPll~~~l~~iv~~l~~~g~~~v~i~TNG~l 96 (302)
T TIGR02668 66 EPLLRKDLIEIIRRIKDYGIKDVSMTTNGIL 96 (302)
T ss_pred ccccccCHHHHHHHHHhCCCceEEEEcCchH
Confidence 35678889999999999888 8999999754
No 318
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=53.51 E-value=19 Score=29.26 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCCCCCCcEEEEecCHHHHHH
Q 026543 159 FLAAAKRFEGGPIDSQEILVFEDAPSGVLA 188 (237)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~igD~~~Di~~ 188 (237)
+..++++++ |+.+++|.|+..|=..
T Consensus 90 ld~vl~~~~-----~~~~i~VsDGaeDE~v 114 (344)
T PF04123_consen 90 LDEVLSKFD-----PDSAIVVSDGAEDERV 114 (344)
T ss_pred HHHHHHhCC-----CCEEEEEecChhhhhh
Confidence 566777776 7799999999988443
No 319
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=53.02 E-value=8.6 Score=31.65 Aligned_cols=19 Identities=37% Similarity=0.260 Sum_probs=16.0
Q ss_pred CCCccEEEEecCcccccch
Q 026543 7 KKPITHVIFDMDGLLLDTE 25 (237)
Q Consensus 7 ~~~~~~vifD~DGTL~~~~ 25 (237)
+.++.+|.||||+||..-.
T Consensus 24 l~~i~~~GfdmDyTL~~Y~ 42 (424)
T KOG2469|consen 24 LENIGIVGFDMDYTLARYN 42 (424)
T ss_pred hhcCcEEeeccccchhhhc
Confidence 4678999999999999644
No 320
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=53.02 E-value=12 Score=27.41 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.4
Q ss_pred cEEEEecCcccccch
Q 026543 11 THVIFDMDGLLLDTE 25 (237)
Q Consensus 11 ~~vifD~DGTL~~~~ 25 (237)
+.|-||+|||+....
T Consensus 59 ~~v~~D~~GT~m~iP 73 (271)
T PF06901_consen 59 HTVTFDFQGTKMVIP 73 (271)
T ss_pred eeEEEeccceEEEee
Confidence 679999999998543
No 321
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=52.86 E-value=60 Score=26.27 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.7
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
-.|-+..+.+.|+++|++++|+|-+...
T Consensus 50 KTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 50 KTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred chHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 3677888999999999999999986654
No 322
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=52.85 E-value=1.1e+02 Score=24.84 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=21.1
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChh
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLA 121 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~ 121 (237)
.|=+..+.+.|+++|++++|+|-+..
T Consensus 65 TP~v~~L~~~l~~~g~~~~ilsRGYg 90 (325)
T PRK00652 65 TPVVIALAEQLQARGLKPGVVSRGYG 90 (325)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 55677788889999999999997654
No 323
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=52.29 E-value=43 Score=24.30 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHcCC--CCCCCCcEEEEecCHH------H----HHHHHHcCCeEEEEcCCCCC--cc--c--ccchhhhh
Q 026543 155 SPDIFLAAAKRFEG--GPIDSQEILVFEDAPS------G----VLAAKNAGMSVVMVPDPRLD--SS--Y--HSNADQLL 216 (237)
Q Consensus 155 ~~~~~~~~l~~~~~--~~~~~~~~~~igD~~~------D----i~~a~~~G~~~i~v~~~~~~--~~--~--~~~~~~~~ 216 (237)
-..++..+.+.+.. ..-.++-++++-|+.+ + +..++..|+....|.-|... .+ . .....+..
T Consensus 90 ~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~~~~~~~~~ 169 (186)
T cd01480 90 TDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIACDGKSALYR 169 (186)
T ss_pred HHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHcCCcchhhh
Confidence 34566666655531 1133566888888853 1 34466789885555544432 11 1 12224788
Q ss_pred hhhcccCCCCC
Q 026543 217 SSLLGFNPKDW 227 (237)
Q Consensus 217 ~~~~el~~~l~ 227 (237)
+++.++.+.++
T Consensus 170 ~~~~~l~~~~~ 180 (186)
T cd01480 170 ENFAELLWSFF 180 (186)
T ss_pred cchhhhccccc
Confidence 88888877553
No 324
>PF13700 DUF4158: Domain of unknown function (DUF4158)
Probab=51.54 E-value=86 Score=22.33 Aligned_cols=80 Identities=13% Similarity=-0.042 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcCCCCCCccHHHHHHHHHhCC
Q 026543 31 VQELILARYNKTFDWSLKAKMMGKKAIEAAQVFVEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKG 110 (237)
Q Consensus 31 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g 110 (237)
.+.-+.+++|++...-..+...+.+.....+.+.+.+|+.. .+........+...........+..-+..++.+|+++.
T Consensus 71 ~i~~va~ql~~~~~~~~~y~~r~~T~~~h~~~I~~~lg~r~-~~~~~~~~L~~~l~~~a~~~~~~~~l~~~~~~~L~~~r 149 (166)
T PF13700_consen 71 DIEYVAKQLGLPPSDLSSYAQRSRTRYRHRAEIREYLGYRP-FDESDRAELEEWLREAARTTDDPDDLFNALIEWLRQRR 149 (166)
T ss_pred HHHHHHHHhCCchHHHHhhhhhhhHHHHHHHHHHHHhCccc-CchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 44445555666433211122234566667777888888764 22222222222222222222334445566777777764
Q ss_pred C
Q 026543 111 I 111 (237)
Q Consensus 111 ~ 111 (237)
+
T Consensus 150 I 150 (166)
T PF13700_consen 150 I 150 (166)
T ss_pred e
Confidence 3
No 325
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=50.91 E-value=1.3e+02 Score=24.30 Aligned_cols=37 Identities=5% Similarity=-0.020 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcC
Q 026543 156 PDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~ 201 (237)
-.-+..++++.. ++||....-+-+|...|.+++.+=.
T Consensus 252 L~el~ali~~a~---------l~I~nDTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 252 LEQAVILIAACK---------AIVTNDSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred HHHHHHHHHhCC---------EEEecCChHHHHHHHhCCCEEEEEC
Confidence 334444555555 7888777777888899999887743
No 326
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=50.48 E-value=29 Score=27.06 Aligned_cols=32 Identities=6% Similarity=0.070 Sum_probs=26.2
Q ss_pred CCCccHHHHHHHHHh-CCCCEEEEeCChhhHHH
Q 026543 94 ELMPGASHLIRHLHA-KGIPMCVATGSLARHFE 125 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~-~g~~v~i~s~~~~~~~~ 125 (237)
.+.+...+.|+.|++ .|+.++|+|++....+.
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~ 68 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRSMVELD 68 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHH
Confidence 356788888999987 68999999998877654
No 327
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=50.41 E-value=1.3e+02 Score=24.14 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQ 174 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~ 174 (237)
-.|--.++++.+++.|.++-+++.++........... .-.|..++.. +-|..-.-..+++-+| -+-.
T Consensus 165 dRpRH~~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~----s~vD~~~GiG------GaPEGVlaAaAlkclG---G~mq 231 (319)
T PRK09479 165 DRPRHEELIAEIREAGARVKLISDGDVAGAIATAFPD----TGVDILMGIG------GAPEGVLAAAALKCLG---GEMQ 231 (319)
T ss_pred cCchHHHHHHHHHHcCCeEEEeccccHHHHHHHhcCC----CCeeEEEEcC------cChHHHHHHHHHHhcC---ceeE
Confidence 4677789999999999999999998876544332222 2345555433 2223333333445555 2211
Q ss_pred cEEEEecCHHHHHHHHHcCC
Q 026543 175 EILVFEDAPSGVLAAKNAGM 194 (237)
Q Consensus 175 ~~~~igD~~~Di~~a~~~G~ 194 (237)
--+ +-.+..+.+.++..|+
T Consensus 232 gRL-~~~~~~e~~r~~~~Gi 250 (319)
T PRK09479 232 GRL-LPRNEEERARAKKMGI 250 (319)
T ss_pred EeE-CCCCHHHHHHHHHcCC
Confidence 111 2234455555666665
No 328
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=49.34 E-value=68 Score=22.95 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=17.5
Q ss_pred EEEEecCcccccchhhHHHHHHHHHHHcCC
Q 026543 12 HVIFDMDGLLLDTEKFYTEVQELILARYNK 41 (237)
Q Consensus 12 ~vifD~DGTL~~~~~~~~~~~~~~~~~~g~ 41 (237)
+|+.|.|++.-..-......+...+..+|.
T Consensus 26 AvfID~~Nv~~~~~~~d~~~i~~~ls~~G~ 55 (160)
T TIGR00288 26 GLLVDGPNMLRKEFNIDLDEIREILSEYGD 55 (160)
T ss_pred EEEEeCCccChhhhccCHHHHHHHHHhcCC
Confidence 677799999743222224455555666663
No 329
>PLN02887 hydrolase family protein
Probab=49.19 E-value=32 Score=30.28 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=31.7
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhh
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHREL 134 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl 134 (237)
.+.+...+.++.++++|+.++++|++....+. .+++.+++
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~-~~l~~L~l 364 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVI-DILKMVDL 364 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHH-HHHHHhCc
Confidence 46778899999999999999999998776655 34555554
No 330
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=47.87 E-value=50 Score=27.40 Aligned_cols=84 Identities=8% Similarity=0.102 Sum_probs=53.9
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
+.-.|++..++..+.+- +++++.|.....+.. .++..++-...|...+... .+.-+.+. |.+-+...+ .+
T Consensus 251 v~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~-~v~d~l~~~k~~~~~lfr~----sc~~~~G~-~ikDis~i~---r~ 320 (390)
T COG5190 251 VSKRPELDYFLGKLSKI-HELVYFTASVKRYAD-PVLDILDSDKVFSHRLFRE----SCVSYLGV-YIKDISKIG---RS 320 (390)
T ss_pred EcCChHHHHHHhhhhhh-EEEEEEecchhhhcc-hHHHhccccceeehhhhcc----cceeccCc-hhhhHHhhc---cC
Confidence 45688999999999887 899999985444333 3555433323333322222 12223344 556777888 88
Q ss_pred CCcEEEEecCHHHH
Q 026543 173 SQEILVFEDAPSGV 186 (237)
Q Consensus 173 ~~~~~~igD~~~Di 186 (237)
...+++|.+++.-.
T Consensus 321 l~~viiId~~p~SY 334 (390)
T COG5190 321 LDKVIIIDNSPASY 334 (390)
T ss_pred CCceEEeeCChhhh
Confidence 89999999999554
No 331
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=47.02 E-value=4.2 Score=31.56 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=14.5
Q ss_pred CccEEEEecCcccccch
Q 026543 9 PITHVIFDMDGLLLDTE 25 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~ 25 (237)
+-|.++.|+|+||+.+.
T Consensus 88 ~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 88 GRKTLVLDLDETLVHSS 104 (262)
T ss_pred CCceEEEeCCCcccccc
Confidence 45899999999998665
No 332
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=47.01 E-value=48 Score=25.91 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCC--------CC-
Q 026543 100 SHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEG--------GP- 170 (237)
Q Consensus 100 ~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~--------~~- 170 (237)
+++.+.+.++|+.|..+.-. .......+.+..++--.-..+++.- .....+-....+..+++++|. ..
T Consensus 41 ~~lve~l~~~gv~V~ll~~~-~~~Pd~VFt~D~~~v~~~~avl~r~--~~p~R~gE~~~~~~~~~~lgi~i~~~~~~~~~ 117 (267)
T COG1834 41 EALVEALEKNGVEVHLLPPI-EGLPDQVFTRDPGLVTGEGAVLARM--GAPERRGEEEAIKETLESLGIPIYPRVEAGVF 117 (267)
T ss_pred HHHHHHHHHCCCEEEEcCcc-cCCCcceEeccceeEecccEEEecc--CChhhccCHHHHHHHHHHcCCcccccccCCCc
Confidence 35667778888888888731 1100000111111100001112211 222334456778888888882 00
Q ss_pred -------CCCCcEEEEecCH-HHHHHHHHc------CCeEEEEcC
Q 026543 171 -------IDSQEILVFEDAP-SGVLAAKNA------GMSVVMVPD 201 (237)
Q Consensus 171 -------~~~~~~~~igD~~-~Di~~a~~~------G~~~i~v~~ 201 (237)
+...++++||.|. +|.++++.. |..+..+.-
T Consensus 118 eG~GD~l~~~~~~v~iG~s~RTn~egi~~l~~~L~~~~~v~~~~~ 162 (267)
T COG1834 118 EGAGDVLMDGGDTVYIGYSFRTNLEGIEQLQAWLEEGYEVSLVRL 162 (267)
T ss_pred cccccEEEeCCcEEEEEeccccchHHHHHHHHHhccCcEEEEEec
Confidence 1127788889888 888777664 455555543
No 333
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=46.97 E-value=32 Score=18.59 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCCEEEEeCChhhHHHHHHhh
Q 026543 100 SHLIRHLHAKGIPMCVATGSLARHFELKTQK 130 (237)
Q Consensus 100 ~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~ 130 (237)
.++.+.|.+.|++.+=+|..++..+..++.+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~ 39 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRK 39 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHH
Confidence 4677889999999888888777666655443
No 334
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=46.88 E-value=16 Score=22.62 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=14.0
Q ss_pred cEEEEecCcccccchh
Q 026543 11 THVIFDMDGLLLDTEK 26 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~ 26 (237)
-.++++-|||.++++.
T Consensus 40 ~~lvLeeDGT~Vd~Ee 55 (81)
T cd06537 40 LTLVLEEDGTAVDSED 55 (81)
T ss_pred eEEEEecCCCEEccHH
Confidence 5789999999998875
No 335
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=46.63 E-value=36 Score=27.04 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=25.6
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFE 125 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~ 125 (237)
-.|--.++++.+++.|.++-++|.++.....
T Consensus 162 dRpRH~~lI~eiR~~Gari~Li~DGDV~~ai 192 (309)
T cd01516 162 DRPRHAALIEEIREAGARIKLIPDGDVAAAI 192 (309)
T ss_pred cCchHHHHHHHHHHcCCeEEEeccccHHHHH
Confidence 4677789999999999999999998775443
No 336
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=45.77 E-value=17 Score=22.10 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=14.2
Q ss_pred ccEEEEecCcccccchh
Q 026543 10 ITHVIFDMDGLLLDTEK 26 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~ 26 (237)
.-.|+++-|||.++++.
T Consensus 38 ~~~l~L~eDGT~VddEe 54 (74)
T smart00266 38 PVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CcEEEEecCCcEEccHH
Confidence 35788999999998875
No 337
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.76 E-value=17 Score=22.33 Aligned_cols=18 Identities=33% Similarity=0.791 Sum_probs=14.7
Q ss_pred ccEEEEecCcccccchhh
Q 026543 10 ITHVIFDMDGLLLDTEKF 27 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~ 27 (237)
.-.++++-|||.++++..
T Consensus 40 ~~~lvL~eDGT~Vd~Eey 57 (78)
T cd06539 40 LVTLVLEEDGTVVDTEEF 57 (78)
T ss_pred CcEEEEeCCCCEEccHHH
Confidence 357889999999988753
No 338
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=45.56 E-value=75 Score=25.88 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCCh
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSL 120 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~ 120 (237)
++.+.+++.++++.+++.|+.+.+.||+.
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 45678899999999999999999999985
No 339
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=45.08 E-value=44 Score=20.13 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=23.8
Q ss_pred cEEEEecCcccccchhhHHHHHHHHHHHcC
Q 026543 11 THVIFDMDGLLLDTEKFYTEVQELILARYN 40 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~~~~~~~~~~~~~~g 40 (237)
+-|.+||+|+-.-+.....+++-.+..+++
T Consensus 18 ~~V~lDF~gv~~~~ssFl~eafg~l~~~~~ 47 (74)
T PF14213_consen 18 EKVVLDFEGVESITSSFLNEAFGQLVREFG 47 (74)
T ss_pred CeEEEECCCcccccHHHHHHHHHHHHHHcC
Confidence 459999999977777777777877777776
No 340
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=44.81 E-value=78 Score=23.68 Aligned_cols=51 Identities=12% Similarity=0.196 Sum_probs=36.8
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCC
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGD 145 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~ 145 (237)
+.+..|.+.++|+.|++. +.+.++-+++.......+- -.+.+.||.+++-+
T Consensus 26 r~~~~~e~~~~l~~lr~~-v~ig~VggsDl~k~~eqlG--~~Vl~~fDY~F~EN 76 (252)
T KOG3189|consen 26 RQKVTPEMLEFLQKLRKK-VTIGFVGGSDLSKQQEQLG--DNVLEEFDYVFSEN 76 (252)
T ss_pred cccCCHHHHHHHHHHhhh-eEEEEeecHHHHHHHHHhc--hhHHhhhcccccCC
Confidence 456788999999999887 8899998866665554431 23566788887643
No 341
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=44.24 E-value=36 Score=30.51 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=28.8
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhh
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHREL 134 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl 134 (237)
.+...+.++.++++|++++++|++....+. .+.+.+++
T Consensus 435 ~~~t~eAL~~L~ekGI~~VIATGRs~~~i~-~l~~~Lgl 472 (694)
T PRK14502 435 YSTALDALRLLKDKELPLVFCSAKTMGEQD-LYRNELGI 472 (694)
T ss_pred CHHHHHHHHHHHHcCCeEEEEeCCCHHHHH-HHHHHcCC
Confidence 345678899999999999999998776544 34555554
No 342
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=44.01 E-value=25 Score=32.66 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=30.9
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhc
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLM 138 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f 138 (237)
-++-+..+..++.|.+++++.+++|+. .-.......+..|+-+..
T Consensus 704 NkLK~~T~~VI~eL~~AnIRtVMcTGD-NllTaisVakeCgmi~p~ 748 (1140)
T KOG0208|consen 704 NKLKEETKRVIDELNRANIRTVMCTGD-NLLTAISVAKECGMIEPQ 748 (1140)
T ss_pred cccccccHHHHHHHHhhcceEEEEcCC-chheeeehhhcccccCCC
Confidence 467788899999999999999999983 323333344455544333
No 343
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=43.93 E-value=1.2e+02 Score=21.80 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=45.1
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhc-ceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLM-HHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDS 173 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f-~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~ 173 (237)
-..=+.++++.+.+++.+++++.+. ..... ..... +...+ ...+.+. ..+.- ++.....+++..+ -..
T Consensus 33 g~dl~~~l~~~~~~~~~~ifllG~~-~~~~~-~~~~~--l~~~yP~l~ivg~--~~g~f--~~~~~~~i~~~I~---~~~ 101 (172)
T PF03808_consen 33 GSDLFPDLLRRAEQRGKRIFLLGGS-EEVLE-KAAAN--LRRRYPGLRIVGY--HHGYF--DEEEEEAIINRIN---ASG 101 (172)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCC-HHHHH-HHHHH--HHHHCCCeEEEEe--cCCCC--ChhhHHHHHHHHH---HcC
Confidence 3344467777788888999999763 33322 23332 22222 3333332 12211 4566777777777 666
Q ss_pred CcEEEEecCH
Q 026543 174 QEILVFEDAP 183 (237)
Q Consensus 174 ~~~~~igD~~ 183 (237)
-++++||=+.
T Consensus 102 pdiv~vglG~ 111 (172)
T PF03808_consen 102 PDIVFVGLGA 111 (172)
T ss_pred CCEEEEECCC
Confidence 6899998765
No 344
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=43.83 E-value=82 Score=25.93 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=25.5
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCCh
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSL 120 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~ 120 (237)
++.+.+++.++++.+++.|+.+.+.||+.
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 45678899999999999999999999985
No 345
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=43.58 E-value=42 Score=26.80 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=24.1
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFE 125 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~ 125 (237)
-.|--.++++.+++.|.++.+++.++.....
T Consensus 162 dRpRH~~lI~eiR~~GarI~Li~DGDVa~ai 192 (321)
T PRK12388 162 DKPRLSAAIEEATQLGVKVFALPDGDVAASV 192 (321)
T ss_pred cCchHHHHHHHHHHcCCeEEEeccccHHHHH
Confidence 4667778889999999999999987775433
No 346
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=42.95 E-value=31 Score=23.09 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=24.4
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARH 123 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~ 123 (237)
-.+.+.+.++.++++|.+++.+|+.....
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 46788899999999999999999965553
No 347
>PRK12415 fructose 1,6-bisphosphatase II; Reviewed
Probab=42.31 E-value=42 Score=26.90 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=25.2
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFE 125 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~ 125 (237)
-.|--.++++.+++.|.++-+++.++.....
T Consensus 163 dRpRH~~lI~eir~~Gari~Li~DGDV~~ai 193 (322)
T PRK12415 163 ERERHQDIIDRVRAKGARVKLFGDGDVGASI 193 (322)
T ss_pred cCchHHHHHHHHHHcCCeEEEeccccHHHHH
Confidence 4667788999999999999999988775433
No 348
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=42.18 E-value=1.7e+02 Score=22.94 Aligned_cols=104 Identities=9% Similarity=-0.006 Sum_probs=50.7
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChh-hHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLA-RHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~-~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
.+.+...++++.++++|+..+.+-+... ......+.+ ...-|=.+++... -.+....-+..+...+++... ..+
T Consensus 128 LP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~---~a~gFIY~vS~~G-vTG~~~~~~~~~~~~i~~ir~-~t~ 202 (263)
T CHL00200 128 LPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIAR---AAPGCIYLVSTTG-VTGLKTELDKKLKKLIETIKK-MTN 202 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH---hCCCcEEEEcCCC-CCCCCccccHHHHHHHHHHHH-hcC
Confidence 4567888899999999876555544332 222222222 2221222222210 111111222334444444431 022
Q ss_pred CCcEEEEe-cCHHHHHHHHHcCCeEEEEcCC
Q 026543 173 SQEILVFE-DAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 173 ~~~~~~ig-D~~~Di~~a~~~G~~~i~v~~~ 202 (237)
.-=++=+| .+..+++.+..+|...+.|.+.
T Consensus 203 ~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 203 KPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred CCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 22333444 3357888888888888888553
No 349
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=41.30 E-value=2e+02 Score=23.69 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=53.0
Q ss_pred CccHHH--HHHHHHhCCCCEEEEeCChhhHH-HHHHhhhhhhhhhc-ceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 96 MPGASH--LIRHLHAKGIPMCVATGSLARHF-ELKTQKHRELFSLM-HHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 96 ~~~~~~--~l~~l~~~g~~v~i~s~~~~~~~-~~~~~~~~gl~~~f-~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
-+|+.+ .+..+.. +.+++++|+...... ...+...+.-..+. ..++..+ ....| +-+.+..+.+.+-+.++
T Consensus 18 g~gl~~~~~l~~~~~-~~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~---GE~~K-sl~~~~~i~~~ll~~~~ 92 (360)
T COG0337 18 GSGLLSDAELAELLA-GRKVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPD---GEEYK-SLETLEKIYDALLEAGL 92 (360)
T ss_pred eCCcccchhhhhhcc-CCeEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCC---Ccccc-cHHHHHHHHHHHHHcCC
Confidence 344443 3334433 359999999766543 33333322111111 1222222 12233 23455554443322116
Q ss_pred CC-CcEEEEecCH-HHHHHHHHc----CCeEEEEcC
Q 026543 172 DS-QEILVFEDAP-SGVLAAKNA----GMSVVMVPD 201 (237)
Q Consensus 172 ~~-~~~~~igD~~-~Di~~a~~~----G~~~i~v~~ 201 (237)
+. +-++.+|-+. .|+..+..+ |+..|.|++
T Consensus 93 ~R~s~iialGGGvigDlaGF~Aaty~RGv~fiqiPT 128 (360)
T COG0337 93 DRKSTLIALGGGVIGDLAGFAAATYMRGVRFIQIPT 128 (360)
T ss_pred CCCcEEEEECChHHHHHHHHHHHHHHcCCCeEeccc
Confidence 55 4477788888 999888776 888888865
No 350
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=41.05 E-value=1.7e+02 Score=22.63 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEE
Q 026543 100 SHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVF 179 (237)
Q Consensus 100 ~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~i 179 (237)
.++++...++|++++++.+ ... +.....+.+. ..| ...+.+. ..+.-. ++-...++++.+ ....++++|
T Consensus 95 ~~ll~~~~~~~~~v~llG~-~~~-v~~~a~~~l~-~~y-~l~i~g~--~~Gyf~--~~e~~~i~~~I~---~s~~dil~V 163 (243)
T PRK03692 95 EALMARAGKEGTPVFLVGG-KPE-VLAQTEAKLR-TQW-NVNIVGS--QDGYFT--PEQRQALFERIH---ASGAKIVTV 163 (243)
T ss_pred HHHHHHHHhcCCeEEEECC-CHH-HHHHHHHHHH-HHh-CCEEEEE--eCCCCC--HHHHHHHHHHHH---hcCCCEEEE
Confidence 4566666778899999965 333 3333344322 123 3333332 223332 444567888888 778899999
Q ss_pred ecCH--HHHHHHH
Q 026543 180 EDAP--SGVLAAK 190 (237)
Q Consensus 180 gD~~--~Di~~a~ 190 (237)
|=+. .+.=+.+
T Consensus 164 glG~PkQE~~~~~ 176 (243)
T PRK03692 164 AMGSPKQEIFMRD 176 (243)
T ss_pred ECCCcHHHHHHHH
Confidence 9774 4444433
No 351
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=40.93 E-value=2.1e+02 Score=23.83 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=6.7
Q ss_pred HHHHHHhCCCCEEEEe
Q 026543 102 LIRHLHAKGIPMCVAT 117 (237)
Q Consensus 102 ~l~~l~~~g~~v~i~s 117 (237)
+++.+.+.|..+=++|
T Consensus 51 il~~l~~~G~g~DvaS 66 (394)
T cd06831 51 VLEILAALGTGFACSS 66 (394)
T ss_pred HHHHHHHcCCCeEeCC
Confidence 3444444444443333
No 352
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=40.66 E-value=64 Score=26.45 Aligned_cols=82 Identities=10% Similarity=0.067 Sum_probs=49.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
..-.||+.-++..+.+. +.++++|. ........+++.+.-..+...-+..+ .. ... ++.. -+=+..+| -+
T Consensus 213 f~kRPgvD~FL~~~a~~-yEIVi~ss-e~gmt~~pl~d~lDP~g~IsYkLfr~--~t-~y~-~G~H-vKdls~LN---Rd 282 (393)
T KOG2832|consen 213 FKKRPGVDYFLGHLAKY-YEIVVYSS-EQGMTVFPLLDALDPKGYISYKLFRG--AT-KYE-EGHH-VKDLSKLN---RD 282 (393)
T ss_pred eccCchHHHHHHhhccc-ceEEEEec-CCccchhhhHhhcCCcceEEEEEecC--cc-ccc-Cccc-hhhhhhhc---cc
Confidence 34688999999999855 99999997 44444545666544333333322222 10 000 0111 12367888 89
Q ss_pred CCcEEEEecCHH
Q 026543 173 SQEILVFEDAPS 184 (237)
Q Consensus 173 ~~~~~~igD~~~ 184 (237)
+.++++|+=..+
T Consensus 283 l~kVivVd~d~~ 294 (393)
T KOG2832|consen 283 LQKVIVVDFDAN 294 (393)
T ss_pred cceeEEEEcccc
Confidence 999999985554
No 353
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=40.30 E-value=1.5e+02 Score=25.06 Aligned_cols=26 Identities=12% Similarity=-0.034 Sum_probs=11.6
Q ss_pred cCcccccchhhHHHHHHHHHHHcCCC
Q 026543 17 MDGLLLDTEKFYTEVQELILARYNKT 42 (237)
Q Consensus 17 ~DGTL~~~~~~~~~~~~~~~~~~g~~ 42 (237)
+|+++...+......+...+++.|++
T Consensus 69 iD~Vv~g~E~~l~~glad~~~~~Gip 94 (426)
T PRK13789 69 FDLIVVGPEDPLVAGFADWAAELGIP 94 (426)
T ss_pred CCEEEECCchHHHHHHHHHHHHcCCC
Confidence 34444443333334444445555554
No 354
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.24 E-value=41 Score=22.35 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=23.0
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
-.+.+.+.++.++++|.+++.+|+....
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3557888899999999999999996554
No 355
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=40.02 E-value=35 Score=27.44 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=26.4
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChh
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLA 121 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~ 121 (237)
++.+.|++.++++.++++|..+.+.||+..
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 466789999999999999999999999864
No 356
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=39.47 E-value=39 Score=23.18 Aligned_cols=22 Identities=5% Similarity=0.069 Sum_probs=12.1
Q ss_pred cHHHHHHHHHhCCCCEEEEeCC
Q 026543 98 GASHLIRHLHAKGIPMCVATGS 119 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~ 119 (237)
...++++...+.+..++++|+.
T Consensus 41 s~e~~v~aa~e~~adii~iSsl 62 (132)
T TIGR00640 41 TPEEIARQAVEADVHVVGVSSL 62 (132)
T ss_pred CHHHHHHHHHHcCCCEEEEcCc
Confidence 3445555555555666665553
No 357
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=39.38 E-value=25 Score=21.70 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.1
Q ss_pred ccEEEEecCcccccchh
Q 026543 10 ITHVIFDMDGLLLDTEK 26 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~ 26 (237)
.-.|+++-|||.++++.
T Consensus 40 ~~~lvL~eDGTeVddEe 56 (78)
T cd01615 40 PVTLVLEEDGTEVDDEE 56 (78)
T ss_pred CeEEEEeCCCcEEccHH
Confidence 34689999999998875
No 358
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=39.36 E-value=1.9e+02 Score=28.35 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=55.2
Q ss_pred HHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEE
Q 026543 99 ASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILV 178 (237)
Q Consensus 99 ~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~ 178 (237)
+.-+|+.|+..|.++.|+|- -.. +...+...+....|.-.-+ + +--..+--+.+++++| .++.=..|
T Consensus 1265 LAiLLqQLk~eghRvLIfTQ-Mtk-mLDVLeqFLnyHgylY~RL--D------g~t~vEqRQaLmerFN---aD~RIfcf 1331 (1958)
T KOG0391|consen 1265 LAILLQQLKSEGHRVLIFTQ-MTK-MLDVLEQFLNYHGYLYVRL--D------GNTSVEQRQALMERFN---ADRRIFCF 1331 (1958)
T ss_pred HHHHHHHHHhcCceEEehhH-HHH-HHHHHHHHHhhcceEEEEe--c------CCccHHHHHHHHHHhc---CCCceEEE
Confidence 44577999999999999986 222 2222222222222222222 1 1223566788999999 88777777
Q ss_pred EecCHHHHHHHHHcCCeEEEEcC
Q 026543 179 FEDAPSGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 179 igD~~~Di~~a~~~G~~~i~v~~ 201 (237)
|=-+.+.--+....|..++.+-+
T Consensus 1332 ILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1332 ILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred EEeccCCccccccccCceEEEec
Confidence 76666555567777887666543
No 359
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=39.33 E-value=25 Score=21.82 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=13.7
Q ss_pred cEEEEecCcccccchh
Q 026543 11 THVIFDMDGLLLDTEK 26 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~ 26 (237)
-.|+++-|||.++++.
T Consensus 43 ~~lvL~eDGT~VddEe 58 (80)
T cd06536 43 ITLVLAEDGTIVEDED 58 (80)
T ss_pred eEEEEecCCcEEccHH
Confidence 4688999999998875
No 360
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=38.73 E-value=66 Score=21.06 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=22.1
Q ss_pred cEEEEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 175 EILVFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 175 ~~~~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
++.+||| ...+-.++.+|+..+.+...
T Consensus 5 kIaVIGD-~dtv~GFrLaGi~~~~v~~~ 31 (104)
T PRK01395 5 KIGVVGD-KDSILPFKALGIDVFPVIDE 31 (104)
T ss_pred eEEEEEC-HHHHHHHHHcCCeeEEecCh
Confidence 5788999 88888999999987777554
No 361
>PRK02947 hypothetical protein; Provisional
Probab=38.65 E-value=1.8e+02 Score=22.36 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=25.0
Q ss_pred HHHHcCCCCCCCCcEEEE-e---cCH---HHHHHHHHcCCeEEEEcCCC
Q 026543 162 AAKRFEGGPIDSQEILVF-E---DAP---SGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 162 ~l~~~~~~~~~~~~~~~i-g---D~~---~Di~~a~~~G~~~i~v~~~~ 203 (237)
...... +.+++++++ . -+. .=++.|++.|+++|.++...
T Consensus 98 ~~~~~~---~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 98 ILDRYD---IRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred HHHHcC---CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 344556 777775555 3 223 33556777899999998754
No 362
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=38.64 E-value=42 Score=27.27 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCCEEEEe
Q 026543 100 SHLIRHLHAKGIPMCVAT 117 (237)
Q Consensus 100 ~~~l~~l~~~g~~v~i~s 117 (237)
.++++.|+++|+.++-+|
T Consensus 187 ~~ll~~L~~kGv~~a~vT 204 (342)
T PRK00147 187 EELLEKLKAKGVEIAFVT 204 (342)
T ss_pred HHHHHHHHHCCCcEEEEE
Confidence 688999999999998888
No 363
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=38.62 E-value=2.1e+02 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=22.1
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
.|=+..+.+.|+++|++++|+|-+...
T Consensus 44 TP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 44 TPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 567788889999999999999975543
No 364
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=38.57 E-value=1.1e+02 Score=25.40 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=27.3
Q ss_pred ecCcccccchhhHHHHHHHHHHHcCCCC---CHHHHHHhcCCChHHHHHHHHHHhCCC
Q 026543 16 DMDGLLLDTEKFYTEVQELILARYNKTF---DWSLKAKMMGKKAIEAAQVFVEETGIS 70 (237)
Q Consensus 16 D~DGTL~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (237)
++|++++.++......+...++..|+.. +.+. .+. .......+.++++.+++
T Consensus 27 ~id~vi~g~E~~l~~~~~d~l~~~Gi~~~g~s~~a-~~l--~~dK~~~k~~l~~~gIp 81 (379)
T PRK13790 27 NVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQA-AQI--EGSKLFAKKIMEKYNIP 81 (379)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhCCCcEECCCHHH-HHH--hCCHHHHHHHHHHCCCC
Confidence 4556666555544555566677777632 2122 111 22344455667777766
No 365
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=38.50 E-value=2.6e+02 Score=24.20 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=24.6
Q ss_pred CCCcEEEEecCHHHHHHHHHc---CCeEEEEcC
Q 026543 172 DSQEILVFEDAPSGVLAAKNA---GMSVVMVPD 201 (237)
Q Consensus 172 ~~~~~~~igD~~~Di~~a~~~---G~~~i~v~~ 201 (237)
...+++.||-++..+.+|..+ |.+++.+..
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 356899999999999988775 888888754
No 366
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=38.32 E-value=31 Score=26.02 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=28.1
Q ss_pred HHHHHHcCCCCCCCCcEEEEecCH----HHHHHHHHcCCeEEEEcCC
Q 026543 160 LAAAKRFEGGPIDSQEILVFEDAP----SGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~igD~~----~Di~~a~~~G~~~i~v~~~ 202 (237)
...++++.. ...+++.||||.. ||.+.....+...+-|..+
T Consensus 164 ty~Lr~l~~--~~~~~I~FfGDkt~pGGNDyei~~~~rt~g~~V~~p 208 (220)
T PF03332_consen 164 TYCLRHLED--EGFDEIHFFGDKTFPGGNDYEIFEDPRTIGHTVTSP 208 (220)
T ss_dssp GGGGGGTTT--TT-SEEEEEESS-STTSTTHHHHHSTTSEEEE-SSH
T ss_pred HHHHHHHHh--cccceEEEEehhccCCCCCceeeecCCccEEEeCCH
Confidence 334555541 2268999999986 9999999988877777654
No 367
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=37.86 E-value=2.5e+02 Score=23.77 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=52.3
Q ss_pred cHHHHHHHHHhCCCCEEEEeCC-------hhh-HHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCC
Q 026543 98 GASHLIRHLHAKGIPMCVATGS-------LAR-HFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGG 169 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~-------~~~-~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~ 169 (237)
.+.++++.|.++|+++.+++.. ..+ .....+.+.+. ..-...+-.+ ..++.-+..++.++.
T Consensus 261 ~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~--~~~~~~vi~~-------~~~~~e~~~iIs~~d-- 329 (426)
T PRK10017 261 AFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS--DPARYHVVMD-------ELNDLEMGKILGACE-- 329 (426)
T ss_pred HHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc--cccceeEecC-------CCChHHHHHHHhhCC--
Confidence 3456778888889999999852 111 11222222221 1001111112 112334446666666
Q ss_pred CCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCCC
Q 026543 170 PIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 170 ~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~ 203 (237)
++||-+..-.-.|..+|++++.++...
T Consensus 330 -------l~ig~RlHa~I~a~~~gvP~i~i~Y~~ 356 (426)
T PRK10017 330 -------LTVGTRLHSAIISMNFGTPAIAINYEH 356 (426)
T ss_pred -------EEEEecchHHHHHHHcCCCEEEeeehH
Confidence 899999999999999999999998743
No 368
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=37.63 E-value=42 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=24.9
Q ss_pred CCCCcc-HHHHHHHHHhCCCCEEEEeCChhh
Q 026543 93 SELMPG-ASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 93 ~~~~~~-~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
+.+.++ +.++++.+++.|+.+++.||+...
T Consensus 49 Pllq~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 49 VLMQAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred HHcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 445666 589999999999999999998664
No 369
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=37.62 E-value=95 Score=26.06 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHH----HHHHcCCeEEEEcCCCC
Q 026543 155 SPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVL----AAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~----~a~~~G~~~i~v~~~~~ 204 (237)
...-...+.+++| --.+-+++|||+..|+- ++...|+.+..|..+..
T Consensus 207 E~~~Va~~Akk~g---kGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGgPF 257 (505)
T PF10113_consen 207 EMEEVAELAKKYG---KGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGGPF 257 (505)
T ss_pred HHHHHHHHHHHhC---CCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 3445667888998 67789999999997764 45556777777765443
No 370
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=37.19 E-value=30 Score=20.71 Aligned_cols=22 Identities=9% Similarity=-0.006 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCCCCCCCcEEEEecC
Q 026543 158 IFLAAAKRFEGGPIDSQEILVFEDA 182 (237)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~igD~ 182 (237)
.+...|++.| +.+.+++.|||-
T Consensus 44 Gv~~~L~~~G---~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 44 GVEKALRKAG---AKEGDTVRIGDY 65 (69)
T ss_dssp THHHHHHTTT-----TT-EEEETTE
T ss_pred CHHHHHHHcC---CCCCCEEEEcCE
Confidence 3556777888 999999999984
No 371
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=37.10 E-value=2e+02 Score=23.19 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHhhc-------CCCCCCccHHHHHHHHHhCCC--CEEEEeCChh
Q 026543 73 LSAEDFLVQREETLQTLF-------PTSELMPGASHLIRHLHAKGI--PMCVATGSLA 121 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l~~~g~--~v~i~s~~~~ 121 (237)
++.+++............ -++.+.+++.++++.+++.+. .+.+.||+..
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~l 102 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSR 102 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhH
Confidence 445555554444333222 246678899999999998764 6889999754
No 372
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=37.09 E-value=1.7e+02 Score=27.76 Aligned_cols=91 Identities=12% Similarity=0.178 Sum_probs=52.5
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHH---hhhhhhhh---hcceeeeCCCCCccCCCCCHHHHHHHHHHcC
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARHFELKT---QKHRELFS---LMHHVVRGDDPEVKQGKPSPDIFLAAAKRFE 167 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~---~~~~gl~~---~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~ 167 (237)
.+..+..+.++....+|+++..+....-......- +++-.+.. +...++-.+ ..|+.......-|.+.+
T Consensus 647 tvP~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVmeN-----kLK~~T~~VI~eL~~An 721 (1140)
T KOG0208|consen 647 TVPADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVMEN-----KLKEETKRVIDELNRAN 721 (1140)
T ss_pred cCCccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEeec-----ccccccHHHHHHHHhhc
Confidence 34568888889999999998777643222211000 11111111 112222222 45666555555555555
Q ss_pred CCCCCCCcEEEEecCH-HHHHHHHHcCC
Q 026543 168 GGPIDSQEILVFEDAP-SGVLAAKNAGM 194 (237)
Q Consensus 168 ~~~~~~~~~~~igD~~-~Di~~a~~~G~ 194 (237)
...++.-||+. .-+..|+++|+
T Consensus 722 -----IRtVMcTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 722 -----IRTVMCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred -----ceEEEEcCCchheeeehhhcccc
Confidence 34566669998 99999999997
No 373
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=37.04 E-value=58 Score=26.00 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=23.8
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHF 124 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~ 124 (237)
-.|--.++++.+++.|.++.+++.++....
T Consensus 162 dRpRH~~lI~eiR~~Gari~Li~DGDVa~a 191 (321)
T TIGR00330 162 AKPRHDAVIAEMQQLGVRVFAIPDGDVAAS 191 (321)
T ss_pred cCchHHHHHHHHHHcCCeEEEeccccHHHH
Confidence 466777888999999999999998776543
No 374
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=36.75 E-value=1.8e+02 Score=23.82 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=25.7
Q ss_pred CCCCcEEEEecCHH---HHHHHHHcCCeEEEEcCCCC
Q 026543 171 IDSQEILVFEDAPS---GVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 171 ~~~~~~~~igD~~~---Di~~a~~~G~~~i~v~~~~~ 204 (237)
..|+-++..||+.. -..+|...|++++.+..|..
T Consensus 92 ~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~r 128 (365)
T TIGR03568 92 LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEV 128 (365)
T ss_pred hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCcc
Confidence 45889999999974 44556667999998877755
No 375
>PLN02591 tryptophan synthase
Probab=36.17 E-value=2.1e+02 Score=22.26 Aligned_cols=102 Identities=9% Similarity=0.003 Sum_probs=53.2
Q ss_pred CCccHHHHHHHHHhCCCCEEE-EeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCV-ATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDS 173 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i-~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~ 173 (237)
+.+...++...++++|+..+. +|-.+.......+.+. ..-|=..++... ..+.....+..+...+++.. -..
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~---~~gFIY~Vs~~G-vTG~~~~~~~~~~~~i~~vk---~~~ 188 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEA---SEGFVYLVSSTG-VTGARASVSGRVESLLQELK---EVT 188 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh---CCCcEEEeeCCC-CcCCCcCCchhHHHHHHHHH---hcC
Confidence 456788899999999865544 4443333222233332 222223333220 11211122334445444444 112
Q ss_pred CcEEEEecC---HHHHHHHHHcCCeEEEEcCCC
Q 026543 174 QEILVFEDA---PSGVLAAKNAGMSVVMVPDPR 203 (237)
Q Consensus 174 ~~~~~igD~---~~Di~~a~~~G~~~i~v~~~~ 203 (237)
+--+++|=+ ..|++.+...|...+.|.+..
T Consensus 189 ~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 189 DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 334555533 579999999999999887643
No 376
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=35.37 E-value=19 Score=24.44 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=13.3
Q ss_pred CCccEEEEecCccccc
Q 026543 8 KPITHVIFDMDGLLLD 23 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~ 23 (237)
+.+..|.||+.+||-.
T Consensus 43 ~~P~iV~FDmK~Tld~ 58 (128)
T PRK13717 43 NAPVTAAFNMKQTVDA 58 (128)
T ss_pred CCCeEEEEehHHHHHH
Confidence 4578999999999953
No 377
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=35.29 E-value=31 Score=21.32 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=13.7
Q ss_pred cEEEEecCcccccchh
Q 026543 11 THVIFDMDGLLLDTEK 26 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~ 26 (237)
-.|+++-|||.++++.
T Consensus 40 ~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 40 SSLVLDEDGTGVDTEE 55 (79)
T ss_pred cEEEEecCCcEEccHH
Confidence 4689999999998875
No 378
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=35.27 E-value=72 Score=24.81 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHc---CCeEEEEcCCCC
Q 026543 154 PSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNA---GMSVVMVPDPRL 204 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~---G~~~i~v~~~~~ 204 (237)
.+...+...|..+| ++-.+...|||.+.+|..+.+. -...+.++.|-.
T Consensus 21 tNa~~la~~L~~~G---~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 21 TNAAFLADELTELG---VDLARITTVGDNPDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred chHHHHHHHHHhcC---ceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 45677888888999 9999999999999887766553 255666665554
No 379
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=35.22 E-value=1.7e+02 Score=23.78 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=23.8
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
-.|=+..+.+.|+++|++++++|-+...
T Consensus 62 KTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 62 KTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred cCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 3677899999999999999999976654
No 380
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=34.70 E-value=14 Score=28.60 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEecC------HHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCCCC
Q 026543 157 DIFLAAAKRFEGGPIDSQEILVFEDA------PSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPKDW 227 (237)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~~~~igD~------~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~l~ 227 (237)
+.=..++++++ + ++++-=|| ..=+++|++.|+++++|.++.. ..+..++.+++|+..++.
T Consensus 187 e~n~al~~~~~---i---~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~-----~~~~~~~~~~~el~~~l~ 252 (256)
T TIGR00715 187 ELEKALLREYR---I---DAVVTKASGEQGGELEKVKAAEALGINVIRIARPQT-----IPGVAIFDDISQLNQFVA 252 (256)
T ss_pred HHHHHHHHHcC---C---CEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC-----CCCCccCCCHHHHHHHHH
Confidence 34455677777 4 33433222 5778999999999999987643 222345566666655543
No 381
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=34.69 E-value=15 Score=22.35 Aligned_cols=9 Identities=67% Similarity=1.006 Sum_probs=8.2
Q ss_pred EEecCcccc
Q 026543 14 IFDMDGLLL 22 (237)
Q Consensus 14 ifD~DGTL~ 22 (237)
=|||+|.++
T Consensus 4 RFdf~G~l~ 12 (73)
T PF08620_consen 4 RFDFDGNLL 12 (73)
T ss_pred cccCCCCEe
Confidence 499999999
No 382
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=34.57 E-value=2.8e+02 Score=23.38 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCccH-HHHHHHHHhCCCCEEEEeCChhh
Q 026543 72 KLSAEDFLVQREETLQTLFPTSELMPGA-SHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
+.+.+.+.+..+...++...-+.+.-|+ ++.+..+++.+-.+.|+|-+..-
T Consensus 139 ~mt~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~ 190 (431)
T PRK13352 139 DMTEDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSF 190 (431)
T ss_pred hCCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHH
Confidence 4777788888777777777777777774 77888888887778888875543
No 383
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=34.19 E-value=60 Score=21.58 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=23.9
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhH
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARH 123 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~ 123 (237)
.-.....+.++.++++|.+++.+|+.....
T Consensus 64 g~~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 64 GETRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp STTHHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred ccchhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 345678888899999999999999855553
No 384
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=33.92 E-value=72 Score=20.74 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHH
Q 026543 156 PDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKN 191 (237)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~ 191 (237)
...+.++++.+. ..+.|.||||- .|.+.-..
T Consensus 52 ~~~i~~i~~~fP-----~~kfiLIGDsgq~DpeiY~~ 83 (100)
T PF09949_consen 52 RDNIERILRDFP-----ERKFILIGDSGQHDPEIYAE 83 (100)
T ss_pred HHHHHHHHHHCC-----CCcEEEEeeCCCcCHHHHHH
Confidence 444555555443 56788888876 66654433
No 385
>PRK14129 heat shock protein HspQ; Provisional
Probab=33.86 E-value=41 Score=21.96 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=14.1
Q ss_pred CccEEEEecCcccccchh
Q 026543 9 PITHVIFDMDGLLLDTEK 26 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~ 26 (237)
.++.|+||+|-+--.+..
T Consensus 18 ~yrGVV~DVDP~fs~~e~ 35 (105)
T PRK14129 18 GYLGVVVDIDPEYSLEEP 35 (105)
T ss_pred CCCeEEEeeCCCcCCCch
Confidence 478999999988876653
No 386
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=33.66 E-value=58 Score=21.68 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=23.3
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
-.+.+.+.++.++++|.+++.+|+....
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 4568888999999999999999985554
No 387
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=33.06 E-value=64 Score=19.28 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=17.4
Q ss_pred HHHHHHHcCCCCCCCCcEEEEecC
Q 026543 159 FLAAAKRFEGGPIDSQEILVFEDA 182 (237)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~igD~ 182 (237)
+...|++.| +.+.+++.|||-
T Consensus 45 v~~~L~~~G---~~~GD~V~Ig~~ 65 (69)
T TIGR03595 45 VEDALRKAG---AKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHHcC---CCCCCEEEEccE
Confidence 566788888 999999999974
No 388
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=32.94 E-value=20 Score=30.73 Aligned_cols=18 Identities=28% Similarity=0.635 Sum_probs=15.0
Q ss_pred ccEEEEecCcccccchhh
Q 026543 10 ITHVIFDMDGLLLDTEKF 27 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~~~ 27 (237)
-+.+++|+||||+.+...
T Consensus 50 ~~t~v~d~~g~Ll~s~s~ 67 (525)
T PLN02588 50 NHTLIFNVEGALLKSNSL 67 (525)
T ss_pred cceEEEecccceeccCCC
Confidence 367999999999987754
No 389
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=32.44 E-value=60 Score=23.33 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=23.9
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARH 123 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~ 123 (237)
-.+.+.++++.++++|.+++.+|+.....
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 45678888999999999999999865554
No 390
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=32.32 E-value=81 Score=23.82 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=19.3
Q ss_pred HHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 106 LHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 106 l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
++++|++++++|++....+.. +++.+++.
T Consensus 26 ~~~~gi~~viaTGR~~~~v~~-~~~~l~l~ 54 (236)
T TIGR02471 26 GSGDAVGFGIATGRSVESAKS-RYAKLNLP 54 (236)
T ss_pred hcCCCceEEEEeCCCHHHHHH-HHHhCCCC
Confidence 466788899999877766553 44444443
No 391
>PF03320 FBPase_glpX: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; InterPro: IPR004464 Gluconeogenesis is an important metabolic pathway, which produces glucose from noncarbohydrate precursors such as organic acids, fatty acids, amino acids, or glycerol. Fructose-1,6-bisphosphatase, a key enzyme of gluconeogenesis, is found in all organisms, and five different classes of these enzymes have been identified. This entry represents the class 2 fructose-1,6-bisphosphatases, which include GlpX and YggF of Escherichia coli (strain K12), which show different catalytic properties. The crystal structure of GlpX has been determined in a free state and in the complex with a substrate (fructose 1,6-bisphosphate) or inhibitor (phosphate). The crystal structure of the ligand-free GlpX revealed a compact, globular shape with two alpha/beta-sandwich domains. The core fold of GlpX is structurally similar to that of Li+-sensitive phosphatases suggesting that they have a common evolutionary origin and catalytic mechanism. The structure of the GlpX complex with fructose 1,6-bisphosphate revealed that the active site is located between two domains and accommodates several conserved residues coordinating two metal ions and the substrate. A third metal ion is bound to phosphate 6 of the substrate. Inorganic phosphate strongly inhibited activity of both GlpX and YggF, and the crystal structure of the GlpX complex with phosphate demonstrated that the inhibitor molecule binds to the active site. Alanine replacement mutagenesis of GlpX identifies 12 conserved residues important for activity and suggested that Thr(90) is the primary catalytic residue []. A number of the proteins in this entry, particularly those from algae are bi functional and can catalyzes the hydrolysis of fructose 1,6-bisphosphate and sedoheptulose 1,7-bisphosphate to fructose 6-phosphate and sedoheptulose 7-phosphate, respectively. ; GO: 0006071 glycerol metabolic process; PDB: 3RPL_C 3ROJ_A 3D1R_A 2R8T_A 3BIH_A 3BIG_A 1NI9_A.
Probab=32.29 E-value=19 Score=28.52 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=24.2
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFEL 126 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~ 126 (237)
-.|--.++++.+++.|.++-+++.++..-...
T Consensus 162 dRpRH~~lI~eiR~~Garv~Li~DGDVa~ai~ 193 (309)
T PF03320_consen 162 DRPRHEELIEEIREAGARVKLISDGDVAGAIA 193 (309)
T ss_dssp -SGGGHHHHHHHHHCT-EEEEESS-HHHHHHH
T ss_pred cCchHHHHHHHHHHcCCeEEEeCcCcHHHHHH
Confidence 46777899999999999999999987765443
No 392
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=31.78 E-value=2e+02 Score=22.04 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhh
Q 026543 97 PGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHREL 134 (237)
Q Consensus 97 ~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl 134 (237)
..+.++.+.++++++++.+............+.+..|+
T Consensus 186 ~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~ 223 (256)
T PF01297_consen 186 KDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGV 223 (256)
T ss_dssp HHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-
T ss_pred HHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCC
Confidence 35677778889999988888765555555555555554
No 393
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=31.74 E-value=2.1e+02 Score=21.02 Aligned_cols=26 Identities=4% Similarity=0.086 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHcCCCCCCCCcEEEEecCH
Q 026543 155 SPDIFLAAAKRFEGGPIDSQEILVFEDAP 183 (237)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~igD~~ 183 (237)
+...+..+++... -...+++++||..
T Consensus 106 ~~~~~~~ll~~~~---~~~~klilvGD~~ 131 (196)
T PF13604_consen 106 DSRQLARLLRLAK---KSGAKLILVGDPN 131 (196)
T ss_dssp BHHHHHHHHHHS----T-T-EEEEEE-TT
T ss_pred CHHHHHHHHHHHH---hcCCEEEEECCcc
Confidence 3455666777766 5566788888854
No 394
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=31.67 E-value=1.4e+02 Score=20.86 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHc-----CCeEEEEcCC
Q 026543 154 PSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNA-----GMSVVMVPDP 202 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~-----G~~~i~v~~~ 202 (237)
.+...+...+++.| .+....-.+.|....+..+.+. +...+..+.|
T Consensus 20 ~n~~~l~~~l~~~G---~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG 70 (152)
T cd00886 20 RSGPALVELLEEAG---HEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGG 70 (152)
T ss_pred chHHHHHHHHHHcC---CeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 35567888899999 9888899999999888776442 5555544433
No 395
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=31.37 E-value=39 Score=27.50 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCCEEEEe
Q 026543 100 SHLIRHLHAKGIPMCVAT 117 (237)
Q Consensus 100 ~~~l~~l~~~g~~v~i~s 117 (237)
.++|+.|+++|+.++-+|
T Consensus 188 ~~ll~~l~~kGv~~a~vT 205 (344)
T TIGR00113 188 EELLEKLKAKGVQYAFIT 205 (344)
T ss_pred HHHHHHHHHCCCeEEEEE
Confidence 688999999999998888
No 396
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=31.13 E-value=2e+02 Score=20.63 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEE
Q 026543 99 ASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILV 178 (237)
Q Consensus 99 ~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~ 178 (237)
+.++++.+.+++.+++++.+ ...... ...+.+. ..+....+.+. ..+.-. ...-..+++..+ ...-++++
T Consensus 35 ~~~ll~~~~~~~~~v~llG~-~~~~~~-~~~~~l~-~~yp~l~i~g~--~~g~~~--~~~~~~i~~~I~---~~~pdiv~ 104 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGA-KPEVLE-KAAERLR-ARYPGLKIVGY--HHGYFG--PEEEEEIIERIN---ASGADILF 104 (171)
T ss_pred HHHHHHHHHHcCCeEEEECC-CHHHHH-HHHHHHH-HHCCCcEEEEe--cCCCCC--hhhHHHHHHHHH---HcCCCEEE
Confidence 45677888888899999965 333333 3333221 12223333331 112222 122233677777 66678888
Q ss_pred EecCH
Q 026543 179 FEDAP 183 (237)
Q Consensus 179 igD~~ 183 (237)
||=+.
T Consensus 105 vglG~ 109 (171)
T cd06533 105 VGLGA 109 (171)
T ss_pred EECCC
Confidence 88664
No 397
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.01 E-value=84 Score=19.43 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHhCCCCEEEEeCChh
Q 026543 97 PGASHLIRHLHAKGIPMCVATGSLA 121 (237)
Q Consensus 97 ~~~~~~l~~l~~~g~~v~i~s~~~~ 121 (237)
....++++.|+++|+++.+.|++..
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~~ 77 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDEL 77 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCHH
Confidence 3478899999999999988887444
No 398
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.97 E-value=1.3e+02 Score=23.69 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhh
Q 026543 97 PGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELF 135 (237)
Q Consensus 97 ~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~ 135 (237)
..+.++++.++++++++.+............+.+..|+.
T Consensus 213 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~gv~ 251 (287)
T cd01137 213 KQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKETGAK 251 (287)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHhCCc
Confidence 355777788888889887776655555555566666653
No 399
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=30.93 E-value=3.4e+02 Score=23.17 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=50.4
Q ss_pred CCCccHHHHHHHHHhC-CCCEEEEe-CChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCC
Q 026543 94 ELMPGASHLIRHLHAK-GIPMCVAT-GSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPI 171 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~-g~~v~i~s-~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~ 171 (237)
...|++.+-|+.|..+ |++++-.. +.++-.+...-++..- ...+|.++. + ..+...-+.+.+..+.+-... +
T Consensus 138 ~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak-~~~~DvvIv-D--TAGRl~ide~Lm~El~~Ik~~--~ 211 (451)
T COG0541 138 TYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK-EEGYDVVIV-D--TAGRLHIDEELMDELKEIKEV--I 211 (451)
T ss_pred cCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH-HcCCCEEEE-e--CCCcccccHHHHHHHHHHHhh--c
Confidence 4566666666666554 34433331 1111112222222211 223455543 2 344444566666666554443 7
Q ss_pred CCCcEEEEecCHHHHHHH---HH----cCCeEEEEc
Q 026543 172 DSQEILVFEDAPSGVLAA---KN----AGMSVVMVP 200 (237)
Q Consensus 172 ~~~~~~~igD~~~Di~~a---~~----~G~~~i~v~ 200 (237)
.|+++++|=|+...=.+. +. .|+..+.++
T Consensus 212 ~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 212 NPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred CCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEE
Confidence 899999999887333222 22 366666665
No 400
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=30.53 E-value=54 Score=18.70 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHhCCCCEEEEeC
Q 026543 97 PGASHLIRHLHAKGIPMCVATG 118 (237)
Q Consensus 97 ~~~~~~l~~l~~~g~~v~i~s~ 118 (237)
|+-++-|+.|.+.|++|.|.+-
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~ 23 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTY 23 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--H
T ss_pred cHHHHHHHHHHHCCCeEEecCc
Confidence 4567889999999999999873
No 401
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=30.44 E-value=98 Score=18.79 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCC
Q 026543 152 GKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGM 194 (237)
Q Consensus 152 ~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~ 194 (237)
.-|....+..++++++ +++..+..|-+.--.|-.++.+|-
T Consensus 25 ~aPftAvlkfaAEeFk---v~~~TsAiiTndGvGINP~qtAGn 64 (82)
T cd01766 25 STPFTAVLKFAAEEFK---VPAATSAIITNDGIGINPAQTAGN 64 (82)
T ss_pred cCchHHHHHHHHHhcC---CCccceeEEecCccccChhhcccc
Confidence 4577888999999999 999988888777777778888873
No 402
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=30.39 E-value=2.9e+02 Score=23.58 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=26.2
Q ss_pred CCCCCccHHHHHHHHHhCCC-CEEEEeCChhh
Q 026543 92 TSELMPGASHLIRHLHAKGI-PMCVATGSLAR 122 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~-~v~i~s~~~~~ 122 (237)
++.+..++.+++...++.|+ .|-+.||+-..
T Consensus 120 EPTvr~DL~eiv~~a~e~g~~hVqinTnGirl 151 (475)
T COG1964 120 EPTLRDDLIEIIKIAREEGYDHVQLNTNGIRL 151 (475)
T ss_pred CccchhhHHHHHHHHhhcCccEEEEccCceee
Confidence 46788999999999999998 78888987543
No 403
>KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair]
Probab=30.19 E-value=1.9e+02 Score=28.94 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.3
Q ss_pred ccEEEEecCcccccch
Q 026543 10 ITHVIFDMDGLLLDTE 25 (237)
Q Consensus 10 ~~~vifD~DGTL~~~~ 25 (237)
.|-.+|+.||+|..-.
T Consensus 928 KRYAVFN~DGsLAELK 943 (2173)
T KOG1798|consen 928 KRYAVFNEDGSLAELK 943 (2173)
T ss_pred heeEEecCCCchhhhc
Confidence 4789999999998644
No 404
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.89 E-value=66 Score=19.48 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.1
Q ss_pred CCccHHHHHHHHHhCCCCEEEEe
Q 026543 95 LMPGASHLIRHLHAKGIPMCVAT 117 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s 117 (237)
-.+.+.++++.++++|.+++.+|
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 59 RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEe
Confidence 35778899999999999999988
No 405
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=29.89 E-value=2.3e+02 Score=21.00 Aligned_cols=88 Identities=9% Similarity=0.129 Sum_probs=45.7
Q ss_pred cHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCC-C-CccCCCCCHHHHH---HHHHHcCCCCCC
Q 026543 98 GASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDD-P-EVKQGKPSPDIFL---AAAKRFEGGPID 172 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~-~-~~~~~kp~~~~~~---~~l~~~~~~~~~ 172 (237)
.+.++++.|++.|+++++---+...... ..+..+. +|.+--... . ...........+. .+++.+| +
T Consensus 134 ~~~~~i~~l~~~G~~ialddfg~~~~~~-~~l~~l~----~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~- 204 (241)
T smart00052 134 SAVATLQRLRELGVRIALDDFGTGYSSL-SYLKRLP----VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLG---L- 204 (241)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCcHHHH-HHHHhCC----CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCC---C-
Confidence 3448899999999999876432222211 2233221 343321110 0 0101111222333 3444455 3
Q ss_pred CCcEEEEe-cCHHHHHHHHHcCCeE
Q 026543 173 SQEILVFE-DAPSGVLAAKNAGMSV 196 (237)
Q Consensus 173 ~~~~~~ig-D~~~Di~~a~~~G~~~ 196 (237)
.+++=| ++..+.+.++..|+..
T Consensus 205 --~via~gVe~~~~~~~l~~~Gi~~ 227 (241)
T smart00052 205 --QVVAEGVETPEQLDLLRSLGCDY 227 (241)
T ss_pred --eEEEecCCCHHHHHHHHHcCCCE
Confidence 566666 7779999999999763
No 406
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=29.84 E-value=3.4e+02 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.4
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEE-eCCh
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVA-TGSL 120 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~-s~~~ 120 (237)
+..++.+.++++.+++.|+++++. ||+.
T Consensus 85 pl~~~~l~eLl~~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 85 VSCYPELEELTKGLSDLGLPIHLGYTSGK 113 (404)
T ss_pred cccCHHHHHHHHHHHhCCCCEEEeCCCCc
Confidence 567899999999999999999995 9864
No 407
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=28.98 E-value=2e+02 Score=23.02 Aligned_cols=58 Identities=10% Similarity=0.160 Sum_probs=34.0
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCe---EEEEcCCCCCcccccchhhhhhhhccc
Q 026543 149 VKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMS---VVMVPDPRLDSSYHSNADQLLSSLLGF 222 (237)
Q Consensus 149 ~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~---~i~v~~~~~~~~~~~~~~~~~~~~~el 222 (237)
+...-|+++..+..++.+. ..++.+...|+. .+.+..|.........-+.++.++.++
T Consensus 115 inL~S~~~ev~e~Si~~L~----------------~~~~~~~~lG~~~~~~vViHpG~~~~~ke~al~r~~~~l~~l 175 (303)
T PRK02308 115 VVLNSPKPEVVENSIKDLE----------------YHAKLLDLMGIDDSSKINIHVGGAYGDKEKALERFIENIKKL 175 (303)
T ss_pred hcCCCCCHHHHHHHHHHHH----------------HHHHHHHHCCCCCCCEEEECCCccCCCHHHHHHHHHHHHHHh
Confidence 3345577888777766666 666777777777 666666554222233344445555544
No 408
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=28.96 E-value=2.5e+02 Score=20.95 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=50.0
Q ss_pred CCCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCC---------CccCCCCCHHHHHHH
Q 026543 92 TSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDP---------EVKQGKPSPDIFLAA 162 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~---------~~~~~kp~~~~~~~~ 162 (237)
..+...|+..+++.|++.++.+-....... +.++-+...-....|.|+.++.. ..-..|+.|..++.+
T Consensus 27 s~~y~~GAd~Ll~~Lr~g~~dv~yMpAH~~---q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~li 103 (254)
T COG5426 27 SVTYHEGADPLLKALRGGEYDVTYMPAHDA---QEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLI 103 (254)
T ss_pred ceecccCchHHHHHHhCCCcceEEechHHH---HHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHH
Confidence 466778999999999999999888875322 22222222223345777665410 112346667666655
Q ss_pred HHHcCCCCCCCCcEEEEecCH
Q 026543 163 AKRFEGGPIDSQEILVFEDAP 183 (237)
Q Consensus 163 l~~~~~~~~~~~~~~~igD~~ 183 (237)
.+-.+ +..-.+|||--.
T Consensus 104 kdyV~----~GGGLLMiGGY~ 120 (254)
T COG5426 104 KDYVE----NGGGLLMIGGYL 120 (254)
T ss_pred HHHHh----cCCcEEEEccEE
Confidence 44433 445677777543
No 409
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=28.93 E-value=2e+02 Score=21.98 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEE
Q 026543 100 SHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVF 179 (237)
Q Consensus 100 ~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~i 179 (237)
..+++.+.+.|+.+-+.|. .+. . .....|+.. -+.++++. .| ..+.+..+++. + ...++
T Consensus 33 ~~vl~~l~~~g~g~dv~S~--~El-~--~a~~~g~~~-~~Ii~~gp------~k-~~~~l~~a~~~-~-------~~~i~ 91 (251)
T PF02784_consen 33 PAVLKILAEEGCGFDVASP--GEL-E--LALKAGFPP-DRIIFTGP------GK-SDEELEEAIEN-G-------VATIN 91 (251)
T ss_dssp HHHHHHHHHTTCEEEESSH--HHH-H--HHHHTTTTG-GGEEEECS------S---HHHHHHHHHH-T-------ESEEE
T ss_pred HHHHHHHHHcCCceEEecc--cch-H--HHHhhhccc-cceeEecC------cc-cHHHHHHHHhC-C-------ceEEE
Confidence 5677778888765555543 322 2 122223322 12344443 33 34455666554 3 22556
Q ss_pred ecCHHHHHHHHHc
Q 026543 180 EDAPSGVLAAKNA 192 (237)
Q Consensus 180 gD~~~Di~~a~~~ 192 (237)
=||..+++.....
T Consensus 92 vDs~~el~~l~~~ 104 (251)
T PF02784_consen 92 VDSLEELERLAEL 104 (251)
T ss_dssp ESSHHHHHHHHHH
T ss_pred eCCHHHHHHHhcc
Confidence 6888887766654
No 410
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=28.89 E-value=1.7e+02 Score=18.97 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=16.4
Q ss_pred CcEEEEecCHHHHHHHHHcCCeEEE
Q 026543 174 QEILVFEDAPSGVLAAKNAGMSVVM 198 (237)
Q Consensus 174 ~~~~~igD~~~Di~~a~~~G~~~i~ 198 (237)
.+++..-++....+.++.+|+..+.
T Consensus 90 ~~ii~~~~~~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 90 IRIIARVNDPENAELLRQAGADHVI 114 (116)
T ss_dssp SEEEEEESSHHHHHHHHHTT-SEEE
T ss_pred CeEEEEECCHHHHHHHHHCCcCEEE
Confidence 5666667777777777777776554
No 411
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.83 E-value=1.8e+02 Score=19.38 Aligned_cols=86 Identities=8% Similarity=-0.010 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCCEEEEeCChh-hHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEE
Q 026543 101 HLIRHLHAKGIPMCVATGSLA-RHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVF 179 (237)
Q Consensus 101 ~~l~~l~~~g~~v~i~s~~~~-~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~i 179 (237)
-+...++.+|+.+..+..... +.+.... . ..--+.+.-+. ......+....+...+++.+ .+ +-.+++
T Consensus 18 ~~~~~l~~~G~~vi~lG~~vp~e~~~~~a-~----~~~~d~V~iS~--~~~~~~~~~~~~~~~L~~~~---~~-~i~i~~ 86 (122)
T cd02071 18 VIARALRDAGFEVIYTGLRQTPEEIVEAA-I----QEDVDVIGLSS--LSGGHMTLFPEVIELLRELG---AG-DILVVG 86 (122)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHH-H----HcCCCEEEEcc--cchhhHHHHHHHHHHHHhcC---CC-CCEEEE
Confidence 344557778887766654222 2222111 1 11234443332 12222222223333344444 32 445666
Q ss_pred ec-CH-HHHHHHHHcCCeEE
Q 026543 180 ED-AP-SGVLAAKNAGMSVV 197 (237)
Q Consensus 180 gD-~~-~Di~~a~~~G~~~i 197 (237)
|= .+ .+.+.++++|+..+
T Consensus 87 GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 87 GGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred ECCCCHHHHHHHHHCCCCEE
Confidence 63 33 55777888997644
No 412
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.70 E-value=2.8e+02 Score=21.60 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=54.0
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCC-------------CccCCCCCH-HHH
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDP-------------EVKQGKPSP-DIF 159 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~-------------~~~~~kp~~-~~~ 159 (237)
...+...++.+.+++.+-+|.+.++ ...... +.+......++-.++...+. .+...-|.. +.=
T Consensus 112 ~~V~d~~ea~~~~~~~~~rVflt~G-~~~l~~--f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n 188 (257)
T COG2099 112 IEVADIEEAAEAAKQLGRRVFLTTG-RQNLAH--FVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDN 188 (257)
T ss_pred EEecCHHHHHHHHhccCCcEEEecC-ccchHH--HhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHH
Confidence 3456788888888888766666665 332211 22222222233333321100 011111222 333
Q ss_pred HHHHHHcCCCCCCCCcEEEEecC------HHHHHHHHHcCCeEEEEcCC
Q 026543 160 LAAAKRFEGGPIDSQEILVFEDA------PSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~igD~------~~Di~~a~~~G~~~i~v~~~ 202 (237)
..++++++ + +++.-=|| ..=+++|...|+++|+|.++
T Consensus 189 ~all~q~~---i---d~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 189 KALLEQYR---I---DVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHHhC---C---CEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 44667777 4 34444333 45699999999999999988
No 413
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=28.54 E-value=1.2e+02 Score=19.58 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=19.1
Q ss_pred cEEEEecCHHHHHHHHHcCCeEEEEc
Q 026543 175 EILVFEDAPSGVLAAKNAGMSVVMVP 200 (237)
Q Consensus 175 ~~~~igD~~~Di~~a~~~G~~~i~v~ 200 (237)
++.+||| ..-+-+++.+|+..+.+.
T Consensus 2 kIaVIGD-~dtv~GFrLaGi~~~~~~ 26 (100)
T PRK02228 2 EIAVIGS-PEFTTGFRLAGIRKVYEV 26 (100)
T ss_pred EEEEEeC-HHHHHHHHHcCCceEEee
Confidence 4678899 777788999998866543
No 414
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=28.42 E-value=3.2e+02 Score=22.03 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=24.1
Q ss_pred CCCCCccHHHHHHHHHh-CCC-CEEEEeCChh
Q 026543 92 TSELMPGASHLIRHLHA-KGI-PMCVATGSLA 121 (237)
Q Consensus 92 ~~~~~~~~~~~l~~l~~-~g~-~v~i~s~~~~ 121 (237)
++.+.+++.++++.+++ .|+ .+.+.||+..
T Consensus 69 EPll~~~l~~li~~i~~~~gi~~v~itTNG~l 100 (334)
T TIGR02666 69 EPLLRKDLVELVARLAALPGIEDIALTTNGLL 100 (334)
T ss_pred cccccCCHHHHHHHHHhcCCCCeEEEEeCchh
Confidence 35577899999999987 477 7999999754
No 415
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=28.40 E-value=2.7e+02 Score=21.19 Aligned_cols=102 Identities=10% Similarity=0.089 Sum_probs=57.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceee--eCCCCCccCCCCCHHHHHHHHH--Hc-C
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVV--RGDDPEVKQGKPSPDIFLAAAK--RF-E 167 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~--~~~~~~~~~~kp~~~~~~~~l~--~~-~ 167 (237)
.+..+...++++.+++.|.+.++.=|..... . .+.. +....|.+. +.+ +..+-.+-.+..+.++.+ ++ .
T Consensus 93 ~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~-~-~i~~---~l~~vD~VlvMtV~-PGf~GQ~fi~~~l~KI~~l~~~~~ 166 (223)
T PRK08745 93 PEASRHVHRTIQLIKSHGCQAGLVLNPATPV-D-ILDW---VLPELDLVLVMSVN-PGFGGQAFIPSALDKLRAIRKKID 166 (223)
T ss_pred ccCcccHHHHHHHHHHCCCceeEEeCCCCCH-H-HHHH---HHhhcCEEEEEEEC-CCCCCccccHHHHHHHHHHHHHHH
Confidence 3444567899999999999999999854432 2 1122 234456553 222 011222333444444322 22 1
Q ss_pred CCCCCCCcEEEEecCH--HHHHHHHHcCCeEEEEcCC
Q 026543 168 GGPIDSQEILVFEDAP--SGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 168 ~~~~~~~~~~~igD~~--~Di~~a~~~G~~~i~v~~~ 202 (237)
+ -..+--+.|+=+. ..+.....+|...+.+.+.
T Consensus 167 ~--~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 167 A--LGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred h--cCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChh
Confidence 0 1223446675554 7788889999987777554
No 416
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=28.29 E-value=1.3e+02 Score=23.31 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=47.3
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID 172 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~ 172 (237)
-..+..+.+.+..++.-|..+++--+ -.+..+...++..||..|-+.+-.+. +.|.+++..-
T Consensus 150 k~~fk~IlE~ikevr~MgmEvCvTLG-Mv~~qQAkeLKdAGLTAYNHNlDTSR-----------EyYskvItTR------ 211 (380)
T KOG2900|consen 150 KSAFKRILEMIKEVRDMGMEVCVTLG-MVDQQQAKELKDAGLTAYNHNLDTSR-----------EYYSKVITTR------ 211 (380)
T ss_pred hhHHHHHHHHHHHHHcCCceeeeeec-cccHHHHHHHHhccceecccCccchh-----------hhhcccceec------
Confidence 34566777888888888876655443 44444445566667766655443332 3344332221
Q ss_pred CCcEEEEecCHHHHHHHHHcCCe
Q 026543 173 SQEILVFEDAPSGVLAAKNAGMS 195 (237)
Q Consensus 173 ~~~~~~igD~~~Di~~a~~~G~~ 195 (237)
-.+|+.+-+.-.+.+|++
T Consensus 212 -----tYDdRL~Ti~nvr~aGik 229 (380)
T KOG2900|consen 212 -----TYDDRLQTIKNVREAGIK 229 (380)
T ss_pred -----chHHHHHHHHHHHHhcce
Confidence 135777778888888844
No 417
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=28.28 E-value=79 Score=23.77 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=25.9
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARH 123 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~ 123 (237)
+...+++.+++..+++.|+++.+=||++...
T Consensus 82 P~~~~~l~~Ll~~l~~~g~~~~lETngti~~ 112 (212)
T COG0602 82 PLLQPNLLELLELLKRLGFRIALETNGTIPV 112 (212)
T ss_pred CCCcccHHHHHHHHHhCCceEEecCCCCccc
Confidence 3345689999999999999999999877654
No 418
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=28.21 E-value=84 Score=19.37 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=18.5
Q ss_pred CCCcEEEEecCH-HH----HHHHHHcCCeEEEEcCC
Q 026543 172 DSQEILVFEDAP-SG----VLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 172 ~~~~~~~igD~~-~D----i~~a~~~G~~~i~v~~~ 202 (237)
-|++++.||-|. .. |.+|-.+|..+++|...
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 368999999886 44 34455678889999753
No 419
>PLN00135 malate dehydrogenase
Probab=28.00 E-value=2e+02 Score=23.15 Aligned_cols=61 Identities=7% Similarity=0.074 Sum_probs=36.2
Q ss_pred CCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcE---EEEecC
Q 026543 111 IPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEI---LVFEDA 182 (237)
Q Consensus 111 ~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~---~~igD~ 182 (237)
..+.++|| +.+.....+.+..|+.. ..++++. . .-....+...+.++++ ++++++ +++|-.
T Consensus 102 aivivvsN-PvDv~t~~~~~~sg~~~--~~vig~g--t---~LDsaR~r~~la~~l~---v~~~~V~~~~VlGeH 165 (309)
T PLN00135 102 CKVLVVAN-PANTNALILKEFAPSIP--EKNITCL--T---RLDHNRALGQISERLG---VPVSDVKNVIIWGNH 165 (309)
T ss_pred eEEEEeCC-cHHHHHHHHHHHcCCCC--ccEEEee--e---hHHHHHHHHHHHHHhC---cChhhceeeEEEEcC
Confidence 56888887 55555544555544422 3455433 1 1224456667778999 999887 566653
No 420
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=27.99 E-value=3.5e+02 Score=22.75 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCccH-HHHHHHHHhCCCCEEEEeCChh
Q 026543 73 LSAEDFLVQREETLQTLFPTSELMPGA-SHLIRHLHAKGIPMCVATGSLA 121 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~g~~v~i~s~~~~ 121 (237)
.+.+.+.+..+...++...-+.+.-|+ ++.+..+++.+-.+.|+|-+..
T Consensus 137 mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs 186 (423)
T TIGR00190 137 MDEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGA 186 (423)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHH
Confidence 667777777777777776667777774 6788888888777888887554
No 421
>PLN02423 phosphomannomutase
Probab=27.86 E-value=1e+02 Score=23.70 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=21.3
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHF 124 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~ 124 (237)
+.+...+++++|+++ +.++++|++.....
T Consensus 25 i~~~~~~ai~~l~~~-i~fviaTGR~~~~~ 53 (245)
T PLN02423 25 ATPEMLEFMKELRKV-VTVGVVGGSDLSKI 53 (245)
T ss_pred CCHHHHHHHHHHHhC-CEEEEECCcCHHHH
Confidence 345667788888876 99999998755443
No 422
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=46 Score=21.68 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=16.0
Q ss_pred CCccEEEEecCcccccchhh
Q 026543 8 KPITHVIFDMDGLLLDTEKF 27 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~~~~~ 27 (237)
-+++.|+||+|-.-.++...
T Consensus 26 fpfrGVV~DvDPeyanteew 45 (116)
T COG3785 26 FPFRGVVFDVDPEYANTEEW 45 (116)
T ss_pred cccceEEEecCcccccCccC
Confidence 35789999999988887753
No 423
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=27.71 E-value=2.6e+02 Score=20.76 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=46.7
Q ss_pred cHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCC-C-CccCCCCCHHHHH---HHHHHcCCCCCC
Q 026543 98 GASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDD-P-EVKQGKPSPDIFL---AAAKRFEGGPID 172 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~-~-~~~~~kp~~~~~~---~~l~~~~~~~~~ 172 (237)
.+.++++.+++.|+++++---+...... ..+..+. +|.+--... . ......-....+. ..++.+|
T Consensus 133 ~~~~~~~~l~~~G~~l~ld~~g~~~~~~-~~l~~~~----~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~----- 202 (240)
T cd01948 133 EALATLRRLRALGVRIALDDFGTGYSSL-SYLKRLP----VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLG----- 202 (240)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCcHhhH-HHHHhCC----CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCC-----
Confidence 3788999999999999885432222211 1222211 333321110 0 0000011122333 3344444
Q ss_pred CCcEEEEe-cCHHHHHHHHHcCCeE
Q 026543 173 SQEILVFE-DAPSGVLAAKNAGMSV 196 (237)
Q Consensus 173 ~~~~~~ig-D~~~Di~~a~~~G~~~ 196 (237)
-.+++=| ++..+.+.++..|+..
T Consensus 203 -~~via~gVe~~~~~~~~~~~gi~~ 226 (240)
T cd01948 203 -LKVVAEGVETEEQLELLRELGCDY 226 (240)
T ss_pred -CeEEEEecCCHHHHHHHHHcCCCe
Confidence 3677777 8889999999999753
No 424
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=27.33 E-value=2.1e+02 Score=19.77 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHc---CCeEEEEcCC
Q 026543 155 SPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNA---GMSVVMVPDP 202 (237)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~---G~~~i~v~~~ 202 (237)
+...+...++++| +.......++|...++..+.+. +...+.++.|
T Consensus 28 n~~~l~~~l~~~G---~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG 75 (144)
T TIGR00177 28 NGPLLAALLEEAG---FNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGG 75 (144)
T ss_pred cHHHHHHHHHHCC---CeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCC
Confidence 4567888899999 8888888999999887765432 4555555543
No 425
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=27.12 E-value=3.4e+02 Score=21.96 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCCEEEEeCChhhHHHHHHhh--hhhhhhh---cceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCC
Q 026543 100 SHLIRHLHAKGIPMCVATGSLARHFELKTQK--HRELFSL---MHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQ 174 (237)
Q Consensus 100 ~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~--~~gl~~~---f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~ 174 (237)
..+++...++|++++-+-++..-.....+.. ...+..+ -..++.+. -. ....+++.++++++.+.. ..-+
T Consensus 20 ~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~Lgts--R~-~~~~~~~~~~~~~~~l~~--~~Id 94 (317)
T cd00763 20 RGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSA--RF-PEFKDEEGQAKAIEQLKK--HGID 94 (317)
T ss_pred HHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccC--CC-CccCCHHHHHHHHHHHHH--cCCC
Confidence 3444555566788877777655332211111 0011111 11223222 11 111245666666555442 3345
Q ss_pred cEEEEe-cC-HHHHHHHHHcCCeEEEEcCC
Q 026543 175 EILVFE-DA-PSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 175 ~~~~ig-D~-~~Di~~a~~~G~~~i~v~~~ 202 (237)
..++|| |+ ........+.|+++|+++..
T Consensus 95 ~Li~IGGdgs~~~a~~L~e~~i~vigiPkT 124 (317)
T cd00763 95 ALVVIGGDGSYMGAMRLTEHGFPCVGLPGT 124 (317)
T ss_pred EEEEECCchHHHHHHHHHHcCCCEEEeccc
Confidence 788886 44 36666667779999999753
No 426
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=27.07 E-value=2.7e+02 Score=20.82 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC--CCcE
Q 026543 99 ASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID--SQEI 176 (237)
Q Consensus 99 ~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~--~~~~ 176 (237)
+..+++.|++. +++++++|--........+... .....-.+-++. ++ .-+..+....++++. .. .-+.
T Consensus 30 ie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~-~g~~i~~v~TG~----~C-H~da~m~~~ai~~l~---~~~~~~Dl 99 (202)
T COG0378 30 IEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL-PGEPIIGVETGK----GC-HLDASMNLEAIEELV---LDFPDLDL 99 (202)
T ss_pred HHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC-CCCeeEEeccCC----cc-CCcHHHHHHHHHHHh---hcCCcCCE
Confidence 34567778877 9999999954443333333331 112222333333 22 245677788888887 33 2488
Q ss_pred EEEecCH
Q 026543 177 LVFEDAP 183 (237)
Q Consensus 177 ~~igD~~ 183 (237)
++|...-
T Consensus 100 l~iEs~G 106 (202)
T COG0378 100 LFIESVG 106 (202)
T ss_pred EEEecCc
Confidence 9987655
No 427
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=26.68 E-value=32 Score=26.59 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=62.6
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhh-hhhhhhhcceeeeCCCCC--------cc-CCCCCHHHHHHH
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQK-HRELFSLMHHVVRGDDPE--------VK-QGKPSPDIFLAA 162 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~-~~gl~~~f~~~~~~~~~~--------~~-~~kp~~~~~~~~ 162 (237)
+....+..++.+.+.+.+..-+++|-|...... +.+ ...-..++-.+....+.. .. .+--+.+.-..+
T Consensus 112 ~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~~--f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~al 189 (249)
T PF02571_consen 112 WHYVDSYEEAAELLKELGGGRIFLTTGSKNLPP--FVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRAL 189 (249)
T ss_pred EEEeCCHHHHHHHHhhcCCCCEEEeCchhhHHH--HhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHHH
Confidence 455678888888887777444444443443222 211 111122222332221000 00 111123445567
Q ss_pred HHHcCCCCCCCCcEEEEecC-----HHHHHHHHHcCCeEEEEcCCCCCcccccchhhhhhhhcccCCC
Q 026543 163 AKRFEGGPIDSQEILVFEDA-----PSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGFNPK 225 (237)
Q Consensus 163 l~~~~~~~~~~~~~~~igD~-----~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el~~~ 225 (237)
+++++ ++ +++-=|| ..=+++|+..|++.+++.++..+ ....++++++|+..+
T Consensus 190 ~~~~~---i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~-----~~~~~~~~~~e~l~~ 246 (249)
T PF02571_consen 190 FRQYG---ID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEP-----YGDPVVETIEELLDW 246 (249)
T ss_pred HHHcC---CC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC-----CCCcccCCHHHHHHH
Confidence 88888 53 4444333 26689999999999999887553 222235666665443
No 428
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=26.65 E-value=82 Score=20.99 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=21.9
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
.+...++++.++++|.+++++|+....
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 456788889999999999999985443
No 429
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=26.62 E-value=1.6e+02 Score=20.99 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=26.4
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhh-hhhcceeee
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHREL-FSLMHHVVR 143 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl-~~~f~~~~~ 143 (237)
....+.++|..++++|.++++...+.... .++..+|+ .+.++.++-
T Consensus 53 ~~~~l~~~L~~~~~~gk~I~~yGA~~kg~---tlln~~g~~~~~I~~vvD 99 (160)
T PF08484_consen 53 SKAELREFLEKLKAEGKRIAGYGAGAKGN---TLLNYFGLDNDLIDYVVD 99 (160)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE---SHHH---HHHHHHT--TTTS--EEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcchHHH---HHHHHhCCCcceeEEEEe
Confidence 34456789999999999999998755543 35667777 345666663
No 430
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=26.52 E-value=2.2e+02 Score=23.67 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=52.4
Q ss_pred HHHHHHHHhCC-C-CEEEEeCChhh-HHHHHHhhhhhhh-hhcceeee--CCCCCccCCCCCH---HHHHHHHHHcCCCC
Q 026543 100 SHLIRHLHAKG-I-PMCVATGSLAR-HFELKTQKHRELF-SLMHHVVR--GDDPEVKQGKPSP---DIFLAAAKRFEGGP 170 (237)
Q Consensus 100 ~~~l~~l~~~g-~-~v~i~s~~~~~-~~~~~~~~~~gl~-~~f~~~~~--~~~~~~~~~kp~~---~~~~~~l~~~~~~~ 170 (237)
..+++.+.+++ + ...|+|+-..+ ......++.+++. .-++.-+. ++ . ..+-.. ..+..++++
T Consensus 20 apli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~--t--l~~~t~~~i~~~~~vl~~----- 90 (383)
T COG0381 20 APLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQ--T--LGEITGNIIEGLSKVLEE----- 90 (383)
T ss_pred hHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCC--C--HHHHHHHHHHHHHHHHHh-----
Confidence 45677787775 3 45667765553 3444556655655 33333332 11 1 111111 223344443
Q ss_pred CCCCcEEEEecCHHHHHHHHHc---CCeEEEEcCCCC
Q 026543 171 IDSQEILVFEDAPSGVLAAKNA---GMSVVMVPDPRL 204 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~---G~~~i~v~~~~~ 204 (237)
..|+-+++-||+..=+.+|..| .+++..|.-|..
T Consensus 91 ~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlR 127 (383)
T COG0381 91 EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLR 127 (383)
T ss_pred hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccc
Confidence 5689888889999766644443 667777765555
No 431
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=26.29 E-value=50 Score=20.39 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=13.0
Q ss_pred cEEEEecCcccccchh
Q 026543 11 THVIFDMDGLLLDTEK 26 (237)
Q Consensus 11 ~~vifD~DGTL~~~~~ 26 (237)
-.++++=|||.++.+.
T Consensus 41 ~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 41 VRLVLEEDGTEVDDEE 56 (78)
T ss_dssp CEEEETTTTCBESSCH
T ss_pred cEEEEeCCCcEEccHH
Confidence 4578899999998764
No 432
>PRK13937 phosphoheptose isomerase; Provisional
Probab=26.20 E-value=90 Score=22.79 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=24.2
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
--.+.+.+.++.++++|.+++.+|+....
T Consensus 117 G~t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 117 GNSPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 34678899999999999999999985544
No 433
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=26.19 E-value=2.8e+02 Score=20.80 Aligned_cols=47 Identities=11% Similarity=0.021 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHcCCCCC-CCCcEEEEecCH-HHHHHHHHcCCeEEEEcCC
Q 026543 152 GKPSPDIFLAAAKRFEGGPI-DSQEILVFEDAP-SGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 152 ~kp~~~~~~~~l~~~~~~~~-~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~ 202 (237)
.+|++.... .+.++. . +..+++.+|.+. .|.......|+.+++|...
T Consensus 17 ~~p~~~l~~-~~~~l~---~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S 65 (213)
T TIGR03840 17 SEVNPLLVK-HWPALG---LPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELS 65 (213)
T ss_pred CCCCHHHHH-HHHhhC---CCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCC
Confidence 456665444 444443 3 446899999988 8888888889998888653
No 434
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=26.12 E-value=71 Score=24.37 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCCCccH-HHHHHHHHhCCCCEEEEeCChh
Q 026543 93 SELMPGA-SHLIRHLHAKGIPMCVATGSLA 121 (237)
Q Consensus 93 ~~~~~~~-~~~l~~l~~~g~~v~i~s~~~~ 121 (237)
+.+.++. .++++.+++.|+++.+.||+..
T Consensus 81 Pll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 81 AILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred HhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4456674 5899999999999999999874
No 435
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=25.97 E-value=1.3e+02 Score=23.57 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=26.2
Q ss_pred CCCCccHHHHHHHHHhC-CCCEEEEeCChhhHHH
Q 026543 93 SELMPGASHLIRHLHAK-GIPMCVATGSLARHFE 125 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~-g~~v~i~s~~~~~~~~ 125 (237)
..+.+++.++|+.|.++ ...++|+|+.+.....
T Consensus 39 a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~ 72 (266)
T COG1877 39 AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELE 72 (266)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHH
Confidence 66889999999999988 2349999997776544
No 436
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=25.95 E-value=4.4e+02 Score=22.87 Aligned_cols=30 Identities=37% Similarity=0.606 Sum_probs=24.6
Q ss_pred CCCCcEEEEecCHHHHHHHHHc---CCeEEEEc
Q 026543 171 IDSQEILVFEDAPSGVLAAKNA---GMSVVMVP 200 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~---G~~~i~v~ 200 (237)
..+.+++.||-++..+.+|..+ |.+++.+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 4567899999999999888775 78887774
No 437
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=25.92 E-value=2.9e+02 Score=20.86 Aligned_cols=102 Identities=8% Similarity=0.076 Sum_probs=54.6
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeee--CCCCCccCCCCCHHHHHH---HHHHcC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVR--GDDPEVKQGKPSPDIFLA---AAKRFE 167 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~--~~~~~~~~~kp~~~~~~~---~l~~~~ 167 (237)
.+..+...++++.+++.|.+.++.-|..... . .+.. +....|.+.. .+ +..+-.+--+..+.+ +.+...
T Consensus 89 ~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~-~-~i~~---~l~~~D~vlvMtV~-PGfgGq~fi~~~lekI~~l~~~~~ 162 (220)
T PRK08883 89 VEASEHVDRTLQLIKEHGCQAGVVLNPATPL-H-HLEY---IMDKVDLILLMSVN-PGFGGQSFIPHTLDKLRAVRKMID 162 (220)
T ss_pred ccCcccHHHHHHHHHHcCCcEEEEeCCCCCH-H-HHHH---HHHhCCeEEEEEec-CCCCCceecHhHHHHHHHHHHHHH
Confidence 4445678899999999999999998854432 2 1222 2334554432 22 011112223333333 222222
Q ss_pred CCCCCCC-cEEEEe-cCHHHHHHHHHcCCeEEEEcCC
Q 026543 168 GGPIDSQ-EILVFE-DAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 168 ~~~~~~~-~~~~ig-D~~~Di~~a~~~G~~~i~v~~~ 202 (237)
. -..+ .+.+.| =+..++....++|...+.+.+.
T Consensus 163 ~--~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 163 E--SGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred h--cCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 0 0111 133333 2348899999999998877654
No 438
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=25.82 E-value=3e+02 Score=20.85 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=46.9
Q ss_pred eeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCH-HHHHHHHHcCCeEEEEcCCCC-C-cccccchhh-h
Q 026543 140 HVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAP-SGVLAAKNAGMSVVMVPDPRL-D-SSYHSNADQ-L 215 (237)
Q Consensus 140 ~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~-~-~~~~~~~~~-~ 215 (237)
.|++-+ ......|+. .+..++++.. .|.+.+|-+=|. .|...|.++|+..|+=+-..+ . ......+|+ .
T Consensus 100 ~IIA~D--aT~R~RP~~-~~~~~i~~~k----~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~l 172 (229)
T COG3010 100 DIIAFD--ATDRPRPDG-DLEELIARIK----YPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQL 172 (229)
T ss_pred cEEEee--cccCCCCcc-hHHHHHHHhh----cCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHH
Confidence 555555 455667776 6777777644 456666666444 999999999999988765444 2 122344554 3
Q ss_pred hhhhcc
Q 026543 216 LSSLLG 221 (237)
Q Consensus 216 ~~~~~e 221 (237)
+..+.+
T Consensus 173 vk~l~~ 178 (229)
T COG3010 173 VKQLSD 178 (229)
T ss_pred HHHHHh
Confidence 344444
No 439
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=25.80 E-value=1.1e+02 Score=20.64 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGS 119 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~ 119 (237)
.+.+|-+.++++.++++|+++++++-+
T Consensus 58 ~~~~~~l~~~~~~a~e~GVk~yvCe~s 84 (120)
T COG2044 58 HPNFPPLEELIKQAIEAGVKIYVCEQS 84 (120)
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEEcch
Confidence 356799999999999999999999863
No 440
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=25.75 E-value=2e+02 Score=20.68 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHc---CCeEEEEcCCCC
Q 026543 155 SPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNA---GMSVVMVPDPRL 204 (237)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~---G~~~i~v~~~~~ 204 (237)
+...+...++++| ++...+..++|....|..+... ....|.++.|..
T Consensus 20 n~~~l~~~L~~~G---~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G 69 (170)
T cd00885 20 NAAFLAKELAELG---IEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG 69 (170)
T ss_pred HHHHHHHHHHHCC---CEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 4557788899999 8888899999999887766543 455555554433
No 441
>PLN02257 phosphoribosylamine--glycine ligase
Probab=25.42 E-value=2.6e+02 Score=23.76 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=6.7
Q ss_pred HHHHHHHHHhCCC
Q 026543 58 EAAQVFVEETGIS 70 (237)
Q Consensus 58 ~~~~~~~~~~~~~ 70 (237)
...+.++.+++++
T Consensus 104 ~~~K~~l~~~GIp 116 (434)
T PLN02257 104 NFMKDLCDKYKIP 116 (434)
T ss_pred HHHHHHHHHcCCC
Confidence 3344555555555
No 442
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=25.27 E-value=1e+02 Score=20.35 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=8.6
Q ss_pred HHHHHcCCeEEEEcCCCC
Q 026543 187 LAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 187 ~~a~~~G~~~i~v~~~~~ 204 (237)
+.|+.+|+..+.++....
T Consensus 51 ~~a~~~Gl~y~~iPv~~~ 68 (110)
T PF04273_consen 51 AAAEALGLQYVHIPVDGG 68 (110)
T ss_dssp HHHHHCT-EEEE----TT
T ss_pred HHHHHcCCeEEEeecCCC
Confidence 467777877777765443
No 443
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=25.19 E-value=92 Score=22.40 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=23.8
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARH 123 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~ 123 (237)
-.+.+.++++.++++|.+++.+|+.....
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 45678889999999999999999865553
No 444
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=24.80 E-value=80 Score=24.59 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=26.2
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhhHH
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLARHF 124 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~ 124 (237)
...+.+.++++.+++.|+.+++.||+....-
T Consensus 96 ~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~ 126 (260)
T COG1180 96 LQAEFALDLLRAAKERGLHVALDTNGFLPPE 126 (260)
T ss_pred hhHHHHHHHHHHHHHCCCcEEEEcCCCCCHH
Confidence 3467788999999999999999999877653
No 445
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=24.75 E-value=1e+02 Score=22.33 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=17.5
Q ss_pred CCCcEEEEecCHHH------HHHHHHcCCeEEEEc
Q 026543 172 DSQEILVFEDAPSG------VLAAKNAGMSVVMVP 200 (237)
Q Consensus 172 ~~~~~~~igD~~~D------i~~a~~~G~~~i~v~ 200 (237)
+.++++.|....+| ++.....|++.++|+
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 56899999877766 444455699999998
No 446
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=24.68 E-value=3.7e+02 Score=21.51 Aligned_cols=84 Identities=12% Similarity=0.046 Sum_probs=44.7
Q ss_pred cHHHHHHHHHhCCCCEEEEeCChhhH-HHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcE
Q 026543 98 GASHLIRHLHAKGIPMCVATGSLARH-FELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEI 176 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~~~~~-~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~ 176 (237)
...++++.+.+.|++++++.+ ..+. ....+.+.. . ..++ + -.++.+-.-+..++++..
T Consensus 195 ~~~~li~~l~~~~~~ivl~G~-~~e~~~~~~i~~~~--~---~~~~--~----l~g~~sL~el~ali~~a~--------- 253 (334)
T TIGR02195 195 HYAELAKRLIDQGYQVVLFGS-AKDHPAGNEIEALL--P---GELR--N----LAGETSLDEAVDLIALAK--------- 253 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEEC-hhhHHHHHHHHHhC--C---cccc--c----CCCCCCHHHHHHHHHhCC---------
Confidence 556777777766766655543 3221 111121110 0 1111 1 112334444555666665
Q ss_pred EEEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 177 LVFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 177 ~~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
++||....-+-.|...|.+++.+=.+
T Consensus 254 l~I~~DSGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 254 AVVTNDSGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred EEEeeCCHHHHHHHHcCCCEEEEECC
Confidence 77876666677888899998877443
No 447
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=24.65 E-value=3e+02 Score=20.52 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=51.3
Q ss_pred cHHHHHHHHHhC-CCCEEEEeCChhhHHH---HHHhhhhhhhhhcceeeeCCCCCccCCCC----CHHHHHHHHHHcCCC
Q 026543 98 GASHLIRHLHAK-GIPMCVATGSLARHFE---LKTQKHRELFSLMHHVVRGDDPEVKQGKP----SPDIFLAAAKRFEGG 169 (237)
Q Consensus 98 ~~~~~l~~l~~~-g~~v~i~s~~~~~~~~---~~~~~~~gl~~~f~~~~~~~~~~~~~~kp----~~~~~~~~l~~~~~~ 169 (237)
.+.++.+.-.++ .--.+++|++....+. .+++..-+|. ||.++... ..+...+ |...+..++..+.
T Consensus 58 ~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~--Fd~v~LKp--~~~~~~sTm~fK~~~l~~ll~~Y~-- 131 (197)
T PF10307_consen 58 NIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLE--FDAVCLKP--ENQRFSSTMDFKQAFLEDLLHTYK-- 131 (197)
T ss_pred HHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCC--ccEEEeCc--ccccCccccHHHHHHHHHHHHhcC--
Confidence 344444433333 4556788987644433 2334443443 78777654 2111222 2344555666665
Q ss_pred CCCCCcEEEEecCHHHHHHHHHc
Q 026543 170 PIDSQEILVFEDAPSGVLAAKNA 192 (237)
Q Consensus 170 ~~~~~~~~~igD~~~Di~~a~~~ 192 (237)
..+++.+.+|+..-+++++..
T Consensus 132 --~~~eI~IYeDR~~hvk~Fr~F 152 (197)
T PF10307_consen 132 --NAEEIRIYEDRPKHVKGFRDF 152 (197)
T ss_pred --CCCEEEEEcCCHHHHHHHHHH
Confidence 678999999999999998874
No 448
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=24.44 E-value=3.5e+02 Score=21.14 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=44.1
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcc-eeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCC
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMH-HVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQ 174 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~-~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~ 174 (237)
.+=+..+++...+.+.+|+++-+ ...... ..... +...+- ..+.+. ..+.-+|..+ +.++++.+ -..-
T Consensus 94 ~Dl~~~Ll~~a~~~~~~vfllGg-kp~V~~-~a~~~--l~~~~p~l~ivg~--h~GYf~~~e~--~~i~~~I~---~s~p 162 (253)
T COG1922 94 TDLVEALLKRAAEEGKRVFLLGG-KPGVAE-QAAAK--LRAKYPGLKIVGS--HDGYFDPEEE--EAIVERIA---ASGP 162 (253)
T ss_pred HHHHHHHHHHhCccCceEEEecC-CHHHHH-HHHHH--HHHHCCCceEEEe--cCCCCChhhH--HHHHHHHH---hcCC
Confidence 33345566666666789999976 443333 22222 233332 333333 3355555555 57777777 6667
Q ss_pred cEEEEecCH
Q 026543 175 EILVFEDAP 183 (237)
Q Consensus 175 ~~~~igD~~ 183 (237)
++++||=+.
T Consensus 163 dil~VgmG~ 171 (253)
T COG1922 163 DILLVGMGV 171 (253)
T ss_pred CEEEEeCCC
Confidence 899999775
No 449
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=24.43 E-value=89 Score=22.42 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=24.1
Q ss_pred CCCccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 94 ELMPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 94 ~~~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
--.+.+.+.++.++++|.+++.+|+....
T Consensus 112 G~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 112 GNSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 34678899999999999999999985444
No 450
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.39 E-value=1.3e+02 Score=17.42 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.0
Q ss_pred cHHHHHHHHHhCCCCEEEEeCCh
Q 026543 98 GASHLIRHLHAKGIPMCVATGSL 120 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~~ 120 (237)
...++++.++++|+..+.+|+..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 46789999999999999999854
No 451
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=24.06 E-value=1.3e+02 Score=19.33 Aligned_cols=33 Identities=6% Similarity=0.159 Sum_probs=21.4
Q ss_pred HHHHHHhCCCCEEEEe-CChhhHHHHHHhhhhhh
Q 026543 102 LIRHLHAKGIPMCVAT-GSLARHFELKTQKHREL 134 (237)
Q Consensus 102 ~l~~l~~~g~~v~i~s-~~~~~~~~~~~~~~~gl 134 (237)
.+..+++++.++++-. ++....+...+++.+|.
T Consensus 13 ~~~~~~~~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 13 ILEAIKKSGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp HHHHHHHTTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred chhhcccCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 3456677888888854 44455566677777776
No 452
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=23.99 E-value=3.8e+02 Score=21.48 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=50.5
Q ss_pred HHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeee-CCCCCccC--CCCCHHHHHHHHHHcCCCCCCCCcEE
Q 026543 101 HLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVR-GDDPEVKQ--GKPSPDIFLAAAKRFEGGPIDSQEIL 177 (237)
Q Consensus 101 ~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~-~~~~~~~~--~kp~~~~~~~~l~~~~~~~~~~~~~~ 177 (237)
++++.+++.|+++..... +.+... . +...| .|.++. +.+ ..++ ..+....+..+.+..+ ++ ++
T Consensus 100 ~~i~~lk~~g~~v~~~v~-s~~~a~-~-a~~~G----aD~Ivv~g~e-agGh~g~~~~~~ll~~v~~~~~---iP---vi 165 (307)
T TIGR03151 100 KYIPRLKENGVKVIPVVA-SVALAK-R-MEKAG----ADAVIAEGME-SGGHIGELTTMALVPQVVDAVS---IP---VI 165 (307)
T ss_pred HHHHHHHHcCCEEEEEcC-CHHHHH-H-HHHcC----CCEEEEECcc-cCCCCCCCcHHHHHHHHHHHhC---CC---EE
Confidence 477777777766544322 232221 1 22223 455543 210 1111 2234566677777666 54 77
Q ss_pred EEecC--HHHHHHHHHcCCeEEEEcCCCC
Q 026543 178 VFEDA--PSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 178 ~igD~--~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
.-|+- ..|+..+...|...+++.+...
T Consensus 166 aaGGI~~~~~~~~al~~GA~gV~iGt~f~ 194 (307)
T TIGR03151 166 AAGGIADGRGMAAAFALGAEAVQMGTRFL 194 (307)
T ss_pred EECCCCCHHHHHHHHHcCCCEeecchHHh
Confidence 77754 3889999999999888876443
No 453
>COG4275 Uncharacterized conserved protein [Function unknown]
Probab=23.97 E-value=37 Score=23.07 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=23.6
Q ss_pred CccEEEEecCcccccchhhHHHHHHHHHHHcCCCC
Q 026543 9 PITHVIFDMDGLLLDTEKFYTEVQELILARYNKTF 43 (237)
Q Consensus 9 ~~~~vifD~DGTL~~~~~~~~~~~~~~~~~~g~~~ 43 (237)
.+.++=||+||+-+.... -.-.+..+++++|+..
T Consensus 44 ~fgAvpfdi~gv~~th~~-e~~sFd~~l~~fgLd~ 77 (143)
T COG4275 44 EFGAVPFDIDGVELTHVG-ERCSFDTMLAKFGLDG 77 (143)
T ss_pred hcCCcceeecceeEEeee-eeecHHHHHHHhCCCc
Confidence 467889999999885443 2345666777777754
No 454
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=23.89 E-value=3.9e+02 Score=21.61 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHhCCCCEEEEeCChhhHH--HHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCC
Q 026543 97 PGASHLIRHLHAKGIPMCVATGSLARHF--ELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQ 174 (237)
Q Consensus 97 ~~~~~~l~~l~~~g~~v~i~s~~~~~~~--~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~ 174 (237)
+...++++.|.++|++++++.+...... ...+.+... -..++ + -.++-+-.-+..++++..
T Consensus 202 e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~----~~~~~--~----l~g~~sL~el~ali~~a~------- 264 (352)
T PRK10422 202 DKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQ----TPPVT--A----LAGKTTFPELGALIDHAQ------- 264 (352)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcC----CCccc--c----ccCCCCHHHHHHHHHhCC-------
Confidence 3566777777777777666544221111 111211100 00111 0 112333444555666665
Q ss_pred cEEEEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 175 EILVFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 175 ~~~~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
++||....-+-.|..+|.+++.+=.+
T Consensus 265 --l~v~nDSGp~HlAaA~g~P~v~lfGp 290 (352)
T PRK10422 265 --LFIGVDSAPAHIAAAVNTPLICLFGA 290 (352)
T ss_pred --EEEecCCHHHHHHHHcCCCEEEEECC
Confidence 78887777777888899998877443
No 455
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=23.85 E-value=2.1e+02 Score=20.35 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHH-----cCCeEEEEcCCCC
Q 026543 155 SPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKN-----AGMSVVMVPDPRL 204 (237)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~-----~G~~~i~v~~~~~ 204 (237)
+...+...+++.| ++....-.|.|....+..+-+ .++..+..+.|..
T Consensus 23 n~~~l~~~L~~~G---~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 23 SGQYLVERLTEAG---HRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred cHHHHHHHHHHCC---CeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 4567888899999 988888899999988877642 2466665554433
No 456
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=23.85 E-value=1.7e+02 Score=22.33 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=20.5
Q ss_pred CCccEEEEecCc---ccccchhhHHHHHHHHHHHcCC
Q 026543 8 KPITHVIFDMDG---LLLDTEKFYTEVQELILARYNK 41 (237)
Q Consensus 8 ~~~~~vifD~DG---TL~~~~~~~~~~~~~~~~~~g~ 41 (237)
..++.++||+|= +=+..--.....++++++++|+
T Consensus 96 e~PD~lvfDLDP~~~~~f~~v~~~A~~vr~~L~~lgL 132 (227)
T cd04861 96 ERPDRLVFDLDPGPGVPFEDVVEAALLLRELLDELGL 132 (227)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 457899999983 2222222234455667777776
No 457
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=23.74 E-value=2.4e+02 Score=25.13 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=18.5
Q ss_pred HHcCCCCCCCCcEEEEecCH-HHHHHHH
Q 026543 164 KRFEGGPIDSQEILVFEDAP-SGVLAAK 190 (237)
Q Consensus 164 ~~~~~~~~~~~~~~~igD~~-~Di~~a~ 190 (237)
+.+| ...++++++|||. .++.+..
T Consensus 462 allG---~TgEriv~aGDSAGgNL~~~V 486 (880)
T KOG4388|consen 462 ALLG---STGERIVLAGDSAGGNLCFTV 486 (880)
T ss_pred HHhC---cccceEEEeccCCCcceeehh
Confidence 5678 8999999999998 5554433
No 458
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=23.71 E-value=3.7e+02 Score=21.68 Aligned_cols=71 Identities=10% Similarity=-0.012 Sum_probs=40.2
Q ss_pred HHHHHHHhCC---CCEEEEeCChhhHHHHHH-hhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcE
Q 026543 101 HLIRHLHAKG---IPMCVATGSLARHFELKT-QKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEI 176 (237)
Q Consensus 101 ~~l~~l~~~g---~~v~i~s~~~~~~~~~~~-~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~ 176 (237)
++...+.+.+ ..+.++|| +.+...... .+..|+... +++.. ..-........+.++++ ++|+++
T Consensus 91 ~i~~~i~~~a~~~~ivivvtN-PvDv~t~v~~~~~sg~p~~---vig~g-----t~LDsaR~r~~la~~l~---v~~~~V 158 (313)
T TIGR01756 91 ATGEALSEYAKPTVKVLVIGN-PVNTNCLVAMLHAPKLSAE---NFSSL-----CMLDHNRAVSRIASKLK---VPVDHI 158 (313)
T ss_pred HHHHHHHhhCCCCeEEEEeCC-chHHHHHHHHHHcCCCCHH---HEEec-----ccHHHHHHHHHHHHHhC---cChhhe
Confidence 3344454443 45778887 555555433 355555442 44332 11223456677888999 999987
Q ss_pred ---EEEecCH
Q 026543 177 ---LVFEDAP 183 (237)
Q Consensus 177 ---~~igD~~ 183 (237)
+++|..-
T Consensus 159 ~~~~V~GeHG 168 (313)
T TIGR01756 159 YHVVVWGNHA 168 (313)
T ss_pred eeeEEEECCC
Confidence 3567543
No 459
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=23.69 E-value=72 Score=23.32 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=19.7
Q ss_pred HHHHHHHHH---cCCCCCCCCcEEEEecCHHH
Q 026543 157 DIFLAAAKR---FEGGPIDSQEILVFEDAPSG 185 (237)
Q Consensus 157 ~~~~~~l~~---~~~~~~~~~~~~~igD~~~D 185 (237)
.++++++++ ++ .++++++++|||...
T Consensus 54 ~a~~~l~~~~~~~~---~d~~~i~l~G~SAGg 82 (211)
T PF07859_consen 54 AAYRWLLKNADKLG---IDPERIVLIGDSAGG 82 (211)
T ss_dssp HHHHHHHHTHHHHT---EEEEEEEEEEETHHH
T ss_pred cceeeecccccccc---ccccceEEeeccccc
Confidence 345555555 78 899999999999833
No 460
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=23.63 E-value=2.3e+02 Score=24.20 Aligned_cols=72 Identities=7% Similarity=-0.017 Sum_probs=42.0
Q ss_pred HHHHHHHHh-C--CCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcE
Q 026543 100 SHLIRHLHA-K--GIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEI 176 (237)
Q Consensus 100 ~~~l~~l~~-~--g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~ 176 (237)
++....+.+ . ...+.++|| +.+.......+..|+.. ..+++.- ..-....+...+.++++ ++++++
T Consensus 206 k~i~~~I~~~a~p~~ivIVVsN-PvDv~t~v~~k~sg~~~--~rViGtg-----T~LDsaR~r~~LA~~l~---V~~~~V 274 (444)
T PLN00112 206 AEQGKALNEVASRNVKVIVVGN-PCNTNALICLKNAPNIP--AKNFHAL-----TRLDENRAKCQLALKAG---VFYDKV 274 (444)
T ss_pred HHHHHHHHHhcCCCeEEEEcCC-cHHHHHHHHHHHcCCCC--cceEEee-----ccHHHHHHHHHHHHHhC---cCHHHc
Confidence 344455555 2 356888887 55555544445444433 4555443 11224556677888999 999877
Q ss_pred ---EEEecC
Q 026543 177 ---LVFEDA 182 (237)
Q Consensus 177 ---~~igD~ 182 (237)
+++|..
T Consensus 275 ~~~~V~GeH 283 (444)
T PLN00112 275 SNVTIWGNH 283 (444)
T ss_pred ccceEEecC
Confidence 677754
No 461
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=23.61 E-value=93 Score=21.84 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=23.6
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
-.+.+.+.++.++++|.+++.+|+....
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4678889999999999999999985554
No 462
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=23.56 E-value=3.2e+02 Score=20.82 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCC-CCcEEEEecCH-HHHHHHHHcCCeEEEEcCC
Q 026543 151 QGKPSPDIFLAAAKRFEGGPID-SQEILVFEDAP-SGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 151 ~~kp~~~~~~~~l~~~~~~~~~-~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~ 202 (237)
..+|++....++ .++. .+ ..++++.|-+. .|+.-....|+.+++|.-.
T Consensus 25 ~~~pnp~L~~~~-~~l~---~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS 74 (226)
T PRK13256 25 QESPNEFLVKHF-SKLN---INDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELS 74 (226)
T ss_pred cCCCCHHHHHHH-HhcC---CCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecC
Confidence 346777655554 4455 43 46889999998 9999999999999998653
No 463
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=23.51 E-value=1.5e+02 Score=23.85 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=61.1
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeee-CCCCCccCCCCCHHHHHHHHHHcCC---CC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVR-GDDPEVKQGKPSPDIFLAAAKRFEG---GP 170 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~-~~~~~~~~~kp~~~~~~~~l~~~~~---~~ 170 (237)
...|-.+++..|++++ +-+++||+-+..+.....+. +|.++. .. .+...+.+.+-++...+.-|. +.
T Consensus 272 yttgp~~li~llrqr~-RpylFSnslppavV~~a~ka------~dllm~s~~--~i~~~~a~~qrfr~~me~aGftIsg~ 342 (417)
T KOG1359|consen 272 YTTGPKPLISLLRQRS-RPYLFSNSLPPAVVGMAAKA------YDLLMVSSK--EIQSRQANTQRFREFMEAAGFTISGA 342 (417)
T ss_pred CccCChhHHHHHHhcC-CceeecCCCChhhhhhhHHH------HHHHHhhHH--HHHHHHHHHHHHHHHHHhcCceecCC
Confidence 4556778888888884 67789997665443222222 222222 22 223334445556666666662 11
Q ss_pred CCCCcEEEEecCHHHHHHHHHc---CCeEEEEcCCCC
Q 026543 171 IDSQEILVFEDAPSGVLAAKNA---GMSVVMVPDPRL 204 (237)
Q Consensus 171 ~~~~~~~~igD~~~Di~~a~~~---G~~~i~v~~~~~ 204 (237)
-.|-.-+++||-.--..+|... |+-+++++.+.-
T Consensus 343 ~hPI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvV 379 (417)
T KOG1359|consen 343 SHPICPVMLGDARLASKMADELLKRGIYVIGFSYPVV 379 (417)
T ss_pred CCCccceecccHHHHHHHHHHHHhcCceEEeecCCcC
Confidence 2366789999998777777664 888888876554
No 464
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=23.29 E-value=2.6e+02 Score=19.81 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHH------------------HHHHHHcCCeEEEEcCCCC
Q 026543 153 KPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSG------------------VLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 153 kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~D------------------i~~a~~~G~~~i~v~~~~~ 204 (237)
-|-..++..+.+.+....-.++-+++|.|+..+ ++.+...|+....|.-+..
T Consensus 84 T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~ 153 (174)
T cd01454 84 TRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRD 153 (174)
T ss_pred CcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCc
Confidence 455677777777775221345668888888732 4556777988655554443
No 465
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=23.23 E-value=1.8e+02 Score=22.23 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=21.0
Q ss_pred CCCccEEEEecCc---ccccchhhHHHHHHHHHHHcCC
Q 026543 7 KKPITHVIFDMDG---LLLDTEKFYTEVQELILARYNK 41 (237)
Q Consensus 7 ~~~~~~vifD~DG---TL~~~~~~~~~~~~~~~~~~g~ 41 (237)
...++-++||+|= +=+..--.....+++.++++|+
T Consensus 95 ~e~PD~lvfDLDP~~~~~f~~v~~~A~~~r~~L~~lgL 132 (227)
T cd04862 95 LERPDRIVFDLDPGPGVPWKAVVEAALLVRELLDELGL 132 (227)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3457899999984 2222222234455667777776
No 466
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=23.20 E-value=4e+02 Score=21.60 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEEe-cC-HHHHHHHHHcCCeEEEEcCC
Q 026543 157 DIFLAAAKRFEGGPIDSQEILVFE-DA-PSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~~~~ig-D~-~~Di~~a~~~G~~~i~v~~~ 202 (237)
+.++++++.+.. ...+-.++|| |. ........+.|+++|+|+..
T Consensus 81 ~~~~~~~~~l~~--~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkT 126 (324)
T TIGR02483 81 DGDDKIVANLKE--LGLDALIAIGGDGTLGIARRLADKGLPVVGVPKT 126 (324)
T ss_pred HHHHHHHHHHHH--cCCCEEEEECCchHHHHHHHHHhcCCCEEeeccc
Confidence 456665555532 3356788886 33 35555556679999999753
No 467
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=23.20 E-value=86 Score=24.72 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=24.2
Q ss_pred CCCCccH-HHHHHHHHhCCCCEEEEeCChh
Q 026543 93 SELMPGA-SHLIRHLHAKGIPMCVATGSLA 121 (237)
Q Consensus 93 ~~~~~~~-~~~l~~l~~~g~~v~i~s~~~~ 121 (237)
+.+.++. .++++.+++.|+.+.+.||+..
T Consensus 136 Pll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 136 PLLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred hhchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 4566775 6899999999999999999864
No 468
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=23.17 E-value=1.3e+02 Score=18.99 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=18.8
Q ss_pred EEEEecCHHHHHHHHHcCCeEEEEc
Q 026543 176 ILVFEDAPSGVLAAKNAGMSVVMVP 200 (237)
Q Consensus 176 ~~~igD~~~Di~~a~~~G~~~i~v~ 200 (237)
+.+|||. .-+.+++.+|+....+.
T Consensus 1 IavIGd~-~~v~gFrLaGv~~~~~~ 24 (95)
T PF01990_consen 1 IAVIGDR-DTVLGFRLAGVEGVYVN 24 (95)
T ss_dssp EEEEE-H-HHHHHHHHTTSEEEEES
T ss_pred CEEEeCH-HHHHHHHHcCCCCccCC
Confidence 4678888 66779999999988886
No 469
>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]
Probab=23.05 E-value=57 Score=24.85 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=13.6
Q ss_pred CCccEEEEecCccccc
Q 026543 8 KPITHVIFDMDGLLLD 23 (237)
Q Consensus 8 ~~~~~vifD~DGTL~~ 23 (237)
..++.++-|+|||++.
T Consensus 29 ~sid~~vaDFDgv~yh 44 (301)
T KOG2826|consen 29 ESIDVTVADFDGVLYH 44 (301)
T ss_pred cceeEEEeccCceEEE
Confidence 4578999999999994
No 470
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.00 E-value=4.4e+02 Score=21.86 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=52.7
Q ss_pred cHHHHHHHHHhCCCCEEEEeCC-hhhHHHHHHhhhhhhhhhcceeeeCC---CCCccCCCCCHHHHHHHHHHcCCCCCCC
Q 026543 98 GASHLIRHLHAKGIPMCVATGS-LARHFELKTQKHRELFSLMHHVVRGD---DPEVKQGKPSPDIFLAAAKRFEGGPIDS 173 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~-~~~~~~~~~~~~~gl~~~f~~~~~~~---~~~~~~~kp~~~~~~~~l~~~~~~~~~~ 173 (237)
-+.++++.+++.++.+.+-.+. ........ +. ..-.|.++... +........++..+.+.+++.+ ++
T Consensus 119 l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~-l~----eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~---ip- 189 (368)
T PRK08649 119 LITERIAEIRDAGVIVAVSLSPQRAQELAPT-VV----EAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELD---VP- 189 (368)
T ss_pred HHHHHHHHHHhCeEEEEEecCCcCHHHHHHH-HH----HCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCC---CC-
Confidence 3477888888877655443321 12222222 22 22235554311 0011222335677788888877 65
Q ss_pred CcEEEEecC--HHHHHHHHHcCCeEEEEcCCCC
Q 026543 174 QEILVFEDA--PSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 174 ~~~~~igD~--~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
++.|+- ..+.+.+..+|+..|.|..+..
T Consensus 190 ---VIaG~V~t~e~A~~l~~aGAD~V~VG~G~G 219 (368)
T PRK08649 190 ---VIVGGCVTYTTALHLMRTGAAGVLVGIGPG 219 (368)
T ss_pred ---EEEeCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 333554 4788888889999998876543
No 471
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=22.95 E-value=1.9e+02 Score=22.37 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=35.1
Q ss_pred hhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHH
Q 026543 136 SLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGV 186 (237)
Q Consensus 136 ~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di 186 (237)
..||.|+|-+ +-...|+|+.+...|.++ +.|.-++++..=....
T Consensus 123 ~~FDvV~cmE---VlEHv~dp~~~~~~c~~l----vkP~G~lf~STinrt~ 166 (243)
T COG2227 123 GQFDVVTCME---VLEHVPDPESFLRACAKL----VKPGGILFLSTINRTL 166 (243)
T ss_pred CCccEEEEhh---HHHccCCHHHHHHHHHHH----cCCCcEEEEeccccCH
Confidence 6899999986 555689999999999998 7899888887654433
No 472
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=22.88 E-value=1.8e+02 Score=22.53 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=20.9
Q ss_pred CCccEEEEecCc---ccccchhhHHHHHHHHHHHcCC
Q 026543 8 KPITHVIFDMDG---LLLDTEKFYTEVQELILARYNK 41 (237)
Q Consensus 8 ~~~~~vifD~DG---TL~~~~~~~~~~~~~~~~~~g~ 41 (237)
..++-++||+|= +=+..--.....++++++++|+
T Consensus 112 ~~PD~lvfDLDP~~~~~f~~v~~~A~~~r~~L~~lgL 148 (245)
T TIGR02778 112 EKPDRIVFDLDPGPGVAWKLVVEAAQLIRELLDELGL 148 (245)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 457899999984 2222222234456667777776
No 473
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=22.78 E-value=69 Score=26.19 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCCEEEEe
Q 026543 100 SHLIRHLHAKGIPMCVAT 117 (237)
Q Consensus 100 ~~~l~~l~~~g~~v~i~s 117 (237)
.++++.|+++|+.++-+|
T Consensus 209 ~~ll~~L~~kGv~~a~vT 226 (366)
T PRK01424 209 KDILDKLKAKGIQTAFLT 226 (366)
T ss_pred HHHHHHHHHCCCeEEEEE
Confidence 689999999999998888
No 474
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=22.66 E-value=3.5e+02 Score=20.59 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=58.9
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeee--CCCCCccCCCCCHHHHHHHHHHcCCCC
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVR--GDDPEVKQGKPSPDIFLAAAKRFEGGP 170 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~--~~~~~~~~~kp~~~~~~~~l~~~~~~~ 170 (237)
.+..+...++++.+++.|++.+++=|..... . . ++ .+.+..|.+.- .+ +..+-.|--+..+.++.+-....
T Consensus 92 ~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~-~-~-i~--~~l~~vD~VllMsVn-PGfgGQ~Fi~~~l~Ki~~lr~~~- 164 (220)
T COG0036 92 AEATEHIHRTIQLIKELGVKAGLVLNPATPL-E-A-LE--PVLDDVDLVLLMSVN-PGFGGQKFIPEVLEKIRELRAMI- 164 (220)
T ss_pred eccCcCHHHHHHHHHHcCCeEEEEECCCCCH-H-H-HH--HHHhhCCEEEEEeEC-CCCcccccCHHHHHHHHHHHHHh-
Confidence 5578889999999999999999998854432 2 1 11 13344565542 21 12222344455555543322200
Q ss_pred CCC-CcEEEEecCH--HHHHHHHHcCCeEEEEcC
Q 026543 171 IDS-QEILVFEDAP--SGVLAAKNAGMSVVMVPD 201 (237)
Q Consensus 171 ~~~-~~~~~igD~~--~Di~~a~~~G~~~i~v~~ 201 (237)
-.. +-.+-|+-+. +.+..+..+|...+...+
T Consensus 165 ~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 165 DERLDILIEVDGGINLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred cccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence 111 2345555444 778888889998776655
No 475
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=22.50 E-value=1.1e+02 Score=20.32 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=21.2
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCC
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGS 119 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~ 119 (237)
-.+.+.+.++.++++|.+++.+|+.
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567888899999999999999963
No 476
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=22.44 E-value=1.7e+02 Score=21.33 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=36.5
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceee-eCCCCCccCCCCCHHHHHHHHH
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVV-RGDDPEVKQGKPSPDIFLAAAK 164 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~-~~~~~~~~~~kp~~~~~~~~l~ 164 (237)
....+.++++.|...|+..+|+|. ... +..+...+.-.-+. ..|+ -++ ......|+.+.|...++
T Consensus 176 itaqvv~iikel~~tgitqvivth-ev~-va~k~as~vvyme~-g~ive~g~--a~~ft~p~te~f~~yls 241 (242)
T COG4161 176 ITAQIVSIIKELAETGITQVIVTH-EVE-VARKTASRVVYMEN-GHIVEQGD--ASCFTEPQTEAFKNYLS 241 (242)
T ss_pred HHHHHHHHHHHHHhcCceEEEEEe-ehh-HHHhhhhheEeeec-CeeEeecc--hhhccCccHHHHHHHhc
Confidence 344677889999999999999996 332 22233222101011 1222 233 33345677887777654
No 477
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=22.35 E-value=2.9e+02 Score=19.46 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=15.2
Q ss_pred CCCcEEEEecCHHHHHH-HHHcCCeEEEEc
Q 026543 172 DSQEILVFEDAPSGVLA-AKNAGMSVVMVP 200 (237)
Q Consensus 172 ~~~~~~~igD~~~Di~~-a~~~G~~~i~v~ 200 (237)
...++++|-|...-+.. |...+.....+.
T Consensus 108 ~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~ 137 (158)
T cd05015 108 LAKHFVAITDNGSGLLKKAGIEGLNTFEIP 137 (158)
T ss_pred ccceEEEEcCCChHHHHHcCCCcceeeeCC
Confidence 44577777775444444 344444444443
No 478
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=22.27 E-value=1.9e+02 Score=22.10 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=20.7
Q ss_pred CCccEEEEecCc---ccccchhhHHHHHHHHHHHcCC
Q 026543 8 KPITHVIFDMDG---LLLDTEKFYTEVQELILARYNK 41 (237)
Q Consensus 8 ~~~~~vifD~DG---TL~~~~~~~~~~~~~~~~~~g~ 41 (237)
..++-++||+|= +=+..--.....++++++++|+
T Consensus 97 e~PD~lvfDLDP~~~~~f~~v~~~A~~vr~~L~~lgL 133 (228)
T cd04865 97 DHPDELVIDLDPQPGTSFEDVVEVALLVREVLDELGL 133 (228)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 457899999983 2222222234456667777776
No 479
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=22.25 E-value=4.7e+02 Score=21.87 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=49.0
Q ss_pred CCCEEEEeCChhhHH----HHHHhhhh---hhh-hhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCC-CCcEEEEe
Q 026543 110 GIPMCVATGSLARHF----ELKTQKHR---ELF-SLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPID-SQEILVFE 180 (237)
Q Consensus 110 g~~v~i~s~~~~~~~----~~~~~~~~---gl~-~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~-~~~~~~ig 180 (237)
+-++.++|+...... ...+.+.+ |+. ..|+.++... .....||.++.+..+.+.+.....+ .+-++.||
T Consensus 42 ~~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~--~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiG 119 (389)
T PRK06203 42 PKKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVP--GGEAAKNDPALVEALHAAINRHGIDRHSYVLAIG 119 (389)
T ss_pred CCeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEcc--CCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeC
Confidence 357888987544321 12222221 221 1144443323 2335677755555555444310044 45788888
Q ss_pred cCH-HHHHHHHHc----CCeEEEEcCC
Q 026543 181 DAP-SGVLAAKNA----GMSVVMVPDP 202 (237)
Q Consensus 181 D~~-~Di~~a~~~----G~~~i~v~~~ 202 (237)
-+. -|+..+..+ |++.|.|++-
T Consensus 120 GGsv~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 120 GGAVLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred CcHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 776 998766643 8888888874
No 480
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=22.24 E-value=4.5e+02 Score=21.66 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=57.4
Q ss_pred cHHHHHHHHH---hCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCC
Q 026543 98 GASHLIRHLH---AKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQ 174 (237)
Q Consensus 98 ~~~~~l~~l~---~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~ 174 (237)
|+-..+..|. ++...|+..|.++..+-.....+.+|+ ..++.- ++-.|.......+.+| .
T Consensus 59 GA~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi----~a~IvM-------P~~tp~~Kv~a~r~~G---a--- 121 (347)
T COG1171 59 GAYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGI----KATIVM-------PETTPKIKVDATRGYG---A--- 121 (347)
T ss_pred hHHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCC----CEEEEe-------cCCCcHHHHHHHHhcC---C---
Confidence 3334444454 123457777776665544444666665 233322 2345666777888888 4
Q ss_pred cEEEEecCHHHHHHH-----HHcCCeEEEEcCCCCCcccccchhhhhhhhccc
Q 026543 175 EILVFEDAPSGVLAA-----KNAGMSVVMVPDPRLDSSYHSNADQLLSSLLGF 222 (237)
Q Consensus 175 ~~~~igD~~~Di~~a-----~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~el 222 (237)
+++..|++..|-..+ ++-|+ .+|..-..+.....+...-.+=++|+
T Consensus 122 eVil~g~~~dda~~~a~~~a~~~G~--~~i~pfD~p~viAGQGTi~lEileq~ 172 (347)
T COG1171 122 EVILHGDNFDDAYAAAEELAEEEGL--TFVPPFDDPDVIAGQGTIALEILEQL 172 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHHHcCC--EEeCCCCCcceeecccHHHHHHHHhc
Confidence 999999998765443 33465 44444333333444444444434443
No 481
>smart00455 RBD Raf-like Ras-binding domain.
Probab=22.00 E-value=1e+02 Score=18.44 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.9
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCcEEEE
Q 026543 150 KQGKPSPDIFLAAAKRFEGGPIDSQEILVF 179 (237)
Q Consensus 150 ~~~kp~~~~~~~~l~~~~~~~~~~~~~~~i 179 (237)
..+++-.+++..+|++.| +.|+.+..+
T Consensus 17 rpg~tl~e~L~~~~~kr~---l~~~~~~v~ 43 (70)
T smart00455 17 RPGKTVRDALAKALKKRG---LNPECCVVR 43 (70)
T ss_pred CCCCCHHHHHHHHHHHcC---CCHHHEEEE
Confidence 356777899999999999 999887766
No 482
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=21.80 E-value=2.7e+02 Score=22.51 Aligned_cols=55 Identities=9% Similarity=-0.014 Sum_probs=31.4
Q ss_pred CCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcE
Q 026543 111 IPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEI 176 (237)
Q Consensus 111 ~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~ 176 (237)
..+.++|| +.+.......+..|... ..+++.. ..-........+.++++ ++++++
T Consensus 119 ~iiivvsN-PvDv~t~v~~~~sg~~~--~~vig~g-----t~LDs~R~r~~la~~l~---v~~~~V 173 (324)
T TIGR01758 119 CKVLVVGN-PANTNALVLSNYAPSIP--PKNFSAL-----TRLDHNRALAQVAERAG---VPVSDV 173 (324)
T ss_pred eEEEEeCC-cHHHHHHHHHHHcCCCC--cceEEEe-----eehHHHHHHHHHHHHhC---CChhhc
Confidence 56777887 55555544444443222 1244332 11224556667888999 999987
No 483
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.66 E-value=3.3e+02 Score=19.82 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEEE
Q 026543 99 ASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEILV 178 (237)
Q Consensus 99 ~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~~ 178 (237)
+.++++...+++.+++++.+ .... .....+.+. ..|-...+.+. .+.-. ++.-..++++.+ -...++++
T Consensus 37 ~~~l~~~~~~~~~~vfllG~-~~~v-~~~~~~~l~-~~yP~l~i~g~---~g~f~--~~~~~~i~~~I~---~s~~dil~ 105 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLYGG-KPDV-LQQLKVKLI-KEYPKLKIVGA---FGPLE--PEERKAALAKIA---RSGAGIVF 105 (177)
T ss_pred HHHHHHHHHHcCCeEEEECC-CHHH-HHHHHHHHH-HHCCCCEEEEE---CCCCC--hHHHHHHHHHHH---HcCCCEEE
Confidence 35667777778899999965 3332 223333321 11222222222 11122 333455677777 66678899
Q ss_pred EecCH
Q 026543 179 FEDAP 183 (237)
Q Consensus 179 igD~~ 183 (237)
||=+.
T Consensus 106 VglG~ 110 (177)
T TIGR00696 106 VGLGC 110 (177)
T ss_pred EEcCC
Confidence 98664
No 484
>PLN02334 ribulose-phosphate 3-epimerase
Probab=21.51 E-value=3.6e+02 Score=20.33 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=52.6
Q ss_pred CccHHHHHHHHHhCCCCEEEEeCChh-hHHHHHHhhhhhhhhhcceeeeCC-CCCccCCCCCHHHHHHHHHHcCCCCC-C
Q 026543 96 MPGASHLIRHLHAKGIPMCVATGSLA-RHFELKTQKHRELFSLMHHVVRGD-DPEVKQGKPSPDIFLAAAKRFEGGPI-D 172 (237)
Q Consensus 96 ~~~~~~~l~~l~~~g~~v~i~s~~~~-~~~~~~~~~~~gl~~~f~~~~~~~-~~~~~~~kp~~~~~~~~l~~~~~~~~-~ 172 (237)
.......++.+++.|..+++..+... ......++...| .|.+..+. .+.....+..+..+..+-+-.. . .
T Consensus 101 ~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~----~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~---~~~ 173 (229)
T PLN02334 101 TIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGL----VDMVLVMSVEPGFGGQSFIPSMMDKVRALRK---KYP 173 (229)
T ss_pred chhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccC----CCEEEEEEEecCCCccccCHHHHHHHHHHHH---hCC
Confidence 34557888999999999999887322 222212222100 23332111 0001112223444444332211 1 1
Q ss_pred CCcEEEE-ecCHHHHHHHHHcCCeEEEEcCC
Q 026543 173 SQEILVF-EDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 173 ~~~~~~i-gD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
...++++ |=+..++....++|...+.+.+.
T Consensus 174 ~~~I~a~GGI~~e~i~~l~~aGad~vvvgsa 204 (229)
T PLN02334 174 ELDIEVDGGVGPSTIDKAAEAGANVIVAGSA 204 (229)
T ss_pred CCcEEEeCCCCHHHHHHHHHcCCCEEEEChH
Confidence 2245566 46679999999999998887654
No 485
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.48 E-value=4.2e+02 Score=20.99 Aligned_cols=26 Identities=12% Similarity=-0.089 Sum_probs=19.6
Q ss_pred EEEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 177 LVFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 177 ~~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
++||....-+-.|..+|.+++.+=.+
T Consensus 257 l~I~~DSgp~HlAaa~g~P~i~lfg~ 282 (319)
T TIGR02193 257 AVVGVDTGLTHLAAALDKPTVTLYGA 282 (319)
T ss_pred EEEeCCChHHHHHHHcCCCEEEEECC
Confidence 77776666677888889998877543
No 486
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.47 E-value=1.9e+02 Score=22.33 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=39.2
Q ss_pred cHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceee--eCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCc
Q 026543 98 GASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVV--RGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQE 175 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~--~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~ 175 (237)
.-..+|+.+.+.|.++.+-|+...-.-.....+.+.-...-+.++ |...|......-+-..+..+-++++ -
T Consensus 101 ~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-------~ 173 (241)
T PF03102_consen 101 TNLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-------V 173 (241)
T ss_dssp T-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST-------S
T ss_pred cCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-------C
Confidence 346789999999999888887544322222233220011112221 2221122222223345666666777 3
Q ss_pred EEEEecCHHHHH---HHHHcCCeEE
Q 026543 176 ILVFEDAPSGVL---AAKNAGMSVV 197 (237)
Q Consensus 176 ~~~igD~~~Di~---~a~~~G~~~i 197 (237)
.+-+.|...++. +|...|...|
T Consensus 174 ~vG~SDHt~g~~~~~~AvalGA~vI 198 (241)
T PF03102_consen 174 PVGYSDHTDGIEAPIAAVALGARVI 198 (241)
T ss_dssp EEEEEE-SSSSHHHHHHHHTT-SEE
T ss_pred CEEeCCCCCCcHHHHHHHHcCCeEE
Confidence 456777764433 4445575543
No 487
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.38 E-value=3.7e+02 Score=23.40 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=60.4
Q ss_pred cHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhh----hhhhhhcceeeeCCCCCccCCCCCH---HHHHHHHHHcCCCC
Q 026543 98 GASHLIRHLHAKGIPMCVATGSLARHFELKTQKH----RELFSLMHHVVRGDDPEVKQGKPSP---DIFLAAAKRFEGGP 170 (237)
Q Consensus 98 ~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~----~gl~~~f~~~~~~~~~~~~~~kp~~---~~~~~~l~~~~~~~ 170 (237)
=+++.++..+++|+.|+++....+.+-..+++.. ..+. ..|.|+... +.-.+-... .-|...+.... ++
T Consensus 454 vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~-~pd~i~~vg--ealvg~dsv~q~~~fn~al~~~~-~~ 529 (587)
T KOG0781|consen 454 VAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVN-KPDLILFVG--EALVGNDSVDQLKKFNRALADHS-TP 529 (587)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcC-CCceEEEeh--hhhhCcHHHHHHHHHHHHHhcCC-Cc
Confidence 3577889999999999988765543322233222 1222 235554333 222222222 22444444432 00
Q ss_pred CCCCcEE-----EEecCH-HHHHHHHHcCCeEEEEcCCCC-Ccccccchhhhhhhh
Q 026543 171 IDSQEIL-----VFEDAP-SGVLAAKNAGMSVVMVPDPRL-DSSYHSNADQLLSSL 219 (237)
Q Consensus 171 ~~~~~~~-----~igD~~-~Di~~a~~~G~~~i~v~~~~~-~~~~~~~~~~~~~~~ 219 (237)
-..+-++ -|||.. .-+.|....|.+.++|..|.. ..+..-...++|.+|
T Consensus 530 r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~l 585 (587)
T KOG0781|consen 530 RLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATL 585 (587)
T ss_pred cccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHh
Confidence 0111222 245554 455666677888888877765 344455666666654
No 488
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=21.20 E-value=2.9e+02 Score=19.05 Aligned_cols=90 Identities=11% Similarity=-0.003 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCCCEEEEeCCh-hhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHHHHHHHHHcCCCCCCCCcEE
Q 026543 99 ASHLIRHLHAKGIPMCVATGSL-ARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQEIL 177 (237)
Q Consensus 99 ~~~~l~~l~~~g~~v~i~s~~~-~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~~~~~l~~~~~~~~~~~~~~ 177 (237)
..-+...|+.+|+.+.-+-... .+.+.... ...-.+.+..+. ......+....+...+++.+ .+ +-.+
T Consensus 20 ~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a-----~~~~~d~V~lS~--~~~~~~~~~~~~~~~L~~~~---~~-~~~i 88 (137)
T PRK02261 20 NKILDRALTEAGFEVINLGVMTSQEEFIDAA-----IETDADAILVSS--LYGHGEIDCRGLREKCIEAG---LG-DILL 88 (137)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----HHcCCCEEEEcC--ccccCHHHHHHHHHHHHhcC---CC-CCeE
Confidence 3334456778888877765422 22222221 122235554443 22222222223333344444 32 3446
Q ss_pred EEecCH--------HHHHHHHHcCCeEEEE
Q 026543 178 VFEDAP--------SGVLAAKNAGMSVVMV 199 (237)
Q Consensus 178 ~igD~~--------~Di~~a~~~G~~~i~v 199 (237)
++|=+. .+.+.+++.|+..++-
T Consensus 89 ~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 89 YVGGNLVVGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred EEECCCCCCccChHHHHHHHHHcCCCEEEC
Confidence 666543 4667888999776653
No 489
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=21.09 E-value=3.6e+02 Score=22.02 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCCCCHHH-----HHHHHHHcCCCCCCC
Q 026543 99 ASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDI-----FLAAAKRFEGGPIDS 173 (237)
Q Consensus 99 ~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~kp~~~~-----~~~~l~~~~~~~~~~ 173 (237)
.+.++..|.++|+.|.|.+- ...... .+++..|+ +.+.-|........|-.... +..++++ .+|
T Consensus 16 Fk~~I~eL~~~GheV~it~R-~~~~~~-~LL~~yg~----~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~-----~~p 84 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITAR-DKDETE-ELLDLYGI----DYIVIGKHGDSLYGKLLESIERQYKLLKLIKK-----FKP 84 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEe-ccchHH-HHHHHcCC----CeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh-----hCC
Confidence 45778899999998877775 444333 45665543 54444431011111100000 1111122 234
Q ss_pred CcEEEEecCHHHHHHHHHcCCeEEEEcCCCC
Q 026543 174 QEILVFEDAPSGVLAAKNAGMSVVMVPDPRL 204 (237)
Q Consensus 174 ~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 204 (237)
+=++ -..|+.-...|.-.|++.|.+.+...
T Consensus 85 Dv~i-s~~s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 85 DVAI-SFGSPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred CEEE-ecCcHHHHHHHHHhCCCeEEEecCch
Confidence 3333 34455555688889999998876543
No 490
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=21.07 E-value=4.4e+02 Score=21.16 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 153 KPSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 153 kp~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
+.+-.-+..++++.. ++||....-+-.|...|.+++.+=.+
T Consensus 248 ~~sL~el~ali~~a~---------l~Vs~DSGp~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 248 KLTLPQLAALIDHAR---------LFIGVDSVPMHMAAALGTPLVALFGP 288 (344)
T ss_pred CCCHHHHHHHHHhCC---------EEEecCCHHHHHHHHcCCCEEEEECC
Confidence 334444555666555 77877777778888999998877443
No 491
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=20.77 E-value=1.3e+02 Score=22.70 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=23.1
Q ss_pred CCCCcc-HHHHHHHHHhCCCCEEEEeCCh
Q 026543 93 SELMPG-ASHLIRHLHAKGIPMCVATGSL 120 (237)
Q Consensus 93 ~~~~~~-~~~~l~~l~~~g~~v~i~s~~~ 120 (237)
+.+.++ +.++++.+++.|+++.+.||+.
T Consensus 76 Pll~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 76 PLLQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 455677 4589999999999999999984
No 492
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.68 E-value=1.4e+02 Score=21.99 Aligned_cols=28 Identities=21% Similarity=0.149 Sum_probs=23.5
Q ss_pred CCccHHHHHHHHHhCCCCEEEEeCChhh
Q 026543 95 LMPGASHLIRHLHAKGIPMCVATGSLAR 122 (237)
Q Consensus 95 ~~~~~~~~l~~l~~~g~~v~i~s~~~~~ 122 (237)
-.+.+.+.++.++++|.+++.+|+....
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s 150 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGG 150 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4678889999999999999999985544
No 493
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=20.58 E-value=78 Score=23.58 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=52.1
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChhhHHHHHHhhhhhhhhhcceeee--CCCCCccCC-CCCHHHHHHH------H
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVR--GDDPEVKQG-KPSPDIFLAA------A 163 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~~~~~~~~~~~~gl~~~f~~~~~--~~~~~~~~~-kp~~~~~~~~------l 163 (237)
.+..+...++++.++++|.+.++.=|.... .. .+. .+....|.+.- .+ ....+ +-.+..+.++ .
T Consensus 88 ~E~~~~~~~~i~~ik~~g~k~GialnP~T~-~~-~~~---~~l~~vD~VlvMsV~--PG~~Gq~f~~~~~~KI~~l~~~~ 160 (201)
T PF00834_consen 88 AEATEDPKETIKYIKEAGIKAGIALNPETP-VE-ELE---PYLDQVDMVLVMSVE--PGFGGQKFIPEVLEKIRELRKLI 160 (201)
T ss_dssp GGGTTTHHHHHHHHHHTTSEEEEEE-TTS--GG-GGT---TTGCCSSEEEEESS---TTTSSB--HGGHHHHHHHHHHHH
T ss_pred ccchhCHHHHHHHHHHhCCCEEEEEECCCC-ch-HHH---HHhhhcCEEEEEEec--CCCCcccccHHHHHHHHHHHHHH
Confidence 445678889999999999999998874432 11 122 23445665542 22 11111 1122333332 2
Q ss_pred HHcCCCCCCCCcEEEEecCH--HHHHHHHHcCCeEEEEc
Q 026543 164 KRFEGGPIDSQEILVFEDAP--SGVLAAKNAGMSVVMVP 200 (237)
Q Consensus 164 ~~~~~~~~~~~~~~~igD~~--~Di~~a~~~G~~~i~v~ 200 (237)
.+.| ..--+.|+=+. ..+....++|+..+.+.
T Consensus 161 ~~~~-----~~~~I~vDGGI~~~~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 161 PENG-----LDFEIEVDGGINEENIKQLVEAGADIFVAG 194 (201)
T ss_dssp HHHT-----CGSEEEEESSESTTTHHHHHHHT--EEEES
T ss_pred HhcC-----CceEEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 2222 33556675554 78888999999877653
No 494
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=20.47 E-value=1.2e+02 Score=23.52 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCCCCC--CcEEEEecCH-HHHHHHHHcCCeEEE
Q 026543 156 PDIFLAAAKRFEGGPIDS--QEILVFEDAP-SGVLAAKNAGMSVVM 198 (237)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~--~~~~~igD~~-~Di~~a~~~G~~~i~ 198 (237)
.+.|..-|+.+| ++| .++-||.|.- +-..+|.-.||.+..
T Consensus 88 QelYL~SL~~lG---id~~~hDIRFVEDnWEsPTLGAwGLGWEVWl 130 (279)
T cd00733 88 QELYLESLEALG---INPKEHDIRFVEDNWESPTLGAWGLGWEVWL 130 (279)
T ss_pred HHHHHHHHHHhC---CCccccCeeEeecCCCCCcccccccccEEEE
Confidence 466778899999 877 5699999997 888899999987544
No 495
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=20.39 E-value=1.2e+02 Score=23.55 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=24.7
Q ss_pred CCCCccHHHHHHHHHhCCCCEEEEeCChh
Q 026543 93 SELMPGASHLIRHLHAKGIPMCVATGSLA 121 (237)
Q Consensus 93 ~~~~~~~~~~l~~l~~~g~~v~i~s~~~~ 121 (237)
.+-+|+.+++++.|+++|+++.+..+...
T Consensus 62 ~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 62 AGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 34688999999999999999999887554
No 496
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.37 E-value=80 Score=20.96 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=15.2
Q ss_pred CCccEEEEecCcccc-cchh
Q 026543 8 KPITHVIFDMDGLLL-DTEK 26 (237)
Q Consensus 8 ~~~~~vifD~DGTL~-~~~~ 26 (237)
..-++-+||=||+|+ ||..
T Consensus 17 t~~RARlyd~dG~Ll~DSr~ 36 (112)
T PF13756_consen 17 TRTRARLYDPDGNLLADSRV 36 (112)
T ss_pred CCceEEEECCCCCEEeeccc
Confidence 356899999999999 5553
No 497
>PRK08508 biotin synthase; Provisional
Probab=20.28 E-value=2.4e+02 Score=22.12 Aligned_cols=100 Identities=12% Similarity=0.011 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHhCCCCEEE-EeCChhhHHHHHHhhhhhhhhhcceeeeCCCCCccCCC-C--CHHH---HHHHHHHcCCC
Q 026543 97 PGASHLIRHLHAKGIPMCV-ATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGK-P--SPDI---FLAAAKRFEGG 169 (237)
Q Consensus 97 ~~~~~~l~~l~~~g~~v~i-~s~~~~~~~~~~~~~~~gl~~~f~~~~~~~~~~~~~~k-p--~~~~---~~~~l~~~~~~ 169 (237)
+.+.++++.+++++..+.+ .|++....-....++..|++.+...+=+++ ..-..+ + +..- ..+.+++.|
T Consensus 75 e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~--~~~~~i~~~~~~~~~l~~i~~a~~~G-- 150 (279)
T PRK08508 75 EYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSK--EFFPKICTTHTWEERFQTCENAKEAG-- 150 (279)
T ss_pred HHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchH--HHhcCCCCCCCHHHHHHHHHHHHHcC--
Confidence 4556777888877544443 455444332333454556644433222222 111111 1 1111 112356778
Q ss_pred CCCCCcEEEEe--cCHHH----HHHHHHcCCeEEEEcC
Q 026543 170 PIDSQEILVFE--DAPSG----VLAAKNAGMSVVMVPD 201 (237)
Q Consensus 170 ~~~~~~~~~ig--D~~~D----i~~a~~~G~~~i~v~~ 201 (237)
+.....+++| ++..| +...++.+..++.+..
T Consensus 151 -i~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~ 187 (279)
T PRK08508 151 -LGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINF 187 (279)
T ss_pred -CeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCC
Confidence 8777777775 55443 4456667777666643
No 498
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=20.15 E-value=5.2e+02 Score=21.58 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCCCEEEEeC
Q 026543 99 ASHLIRHLHAKGIPMCVATG 118 (237)
Q Consensus 99 ~~~~l~~l~~~g~~v~i~s~ 118 (237)
...+++.+.+.|..+.+.|-
T Consensus 62 ~~~vl~~l~~~G~g~dvaS~ 81 (417)
T TIGR01048 62 NLALLRLLAELGSGFDVVSG 81 (417)
T ss_pred CHHHHHHHHHcCCcEEEeCH
Confidence 56788888888876655553
No 499
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=20.13 E-value=3.8e+02 Score=20.05 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHcCCCCCCCCcEEEEecCHHHHHHHHHcCCeEEEEcCC
Q 026543 154 PSPDIFLAAAKRFEGGPIDSQEILVFEDAPSGVLAAKNAGMSVVMVPDP 202 (237)
Q Consensus 154 p~~~~~~~~l~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 202 (237)
.++.-+..++.+.. ++||.+....-.|...|++++.+...
T Consensus 246 ~~~~~~~~~~~~~~---------~~Is~RlH~~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 246 LSPDELLELISQAD---------LVISMRLHGAILALSLGVPVIAISYD 285 (286)
T ss_pred CCHHHHHHHHhcCC---------EEEecCCHHHHHHHHcCCCEEEEecC
Confidence 45566666666665 88999999999999999999998764
Done!