Query 026544
Match_columns 237
No_of_seqs 113 out of 522
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:24:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00101 14_3_3 14-3-3 homol 100.0 3.5E-78 7.6E-83 535.6 21.9 204 5-209 1-206 (244)
2 COG5040 BMH1 14-3-3 family pro 100.0 1.4E-78 2.9E-83 518.6 13.2 208 1-209 1-208 (268)
3 PF00244 14-3-3: 14-3-3 protei 100.0 4.1E-74 9E-79 507.4 19.3 204 5-209 1-204 (236)
4 KOG0841 Multifunctional chaper 100.0 1E-68 2.2E-73 468.3 17.2 205 4-209 1-206 (247)
5 PF13424 TPR_12: Tetratricopep 94.4 0.071 1.5E-06 37.9 4.2 54 147-203 22-75 (78)
6 KOG1840 Kinesin light chain [C 88.9 22 0.00047 35.4 15.6 185 7-207 201-400 (508)
7 TIGR00990 3a0801s09 mitochondr 88.1 9.7 0.00021 37.7 12.7 53 147-202 484-536 (615)
8 PF12862 Apc5: Anaphase-promot 82.9 6.8 0.00015 29.4 6.9 58 147-206 15-73 (94)
9 PF07719 TPR_2: Tetratricopept 79.5 4.6 9.9E-05 23.6 4.0 30 8-37 4-33 (34)
10 PF13374 TPR_10: Tetratricopep 79.0 2 4.4E-05 26.1 2.4 23 147-169 19-41 (42)
11 PF13174 TPR_6: Tetratricopept 76.0 5.8 0.00013 22.9 3.7 30 8-37 3-32 (33)
12 PF13181 TPR_8: Tetratricopept 73.8 6.4 0.00014 23.1 3.6 29 8-36 4-32 (34)
13 PF13428 TPR_14: Tetratricopep 69.9 9.7 0.00021 24.3 4.0 30 8-37 4-33 (44)
14 PF04781 DUF627: Protein of un 68.5 12 0.00026 29.9 4.9 69 118-191 31-103 (111)
15 PF00515 TPR_1: Tetratricopept 68.0 13 0.00028 21.9 4.0 30 8-37 4-33 (34)
16 PF13414 TPR_11: TPR repeat; P 64.1 27 0.00058 23.6 5.6 47 147-202 20-66 (69)
17 PF05010 TACC: Transforming ac 62.6 34 0.00073 30.1 7.1 80 10-106 123-206 (207)
18 COG0233 Frr Ribosome recycling 59.9 23 0.00049 30.9 5.4 73 36-109 105-177 (187)
19 PF01765 RRF: Ribosome recycli 58.6 33 0.00072 28.6 6.2 73 36-109 85-157 (165)
20 KOG4162 Predicted calmodulin-b 58.0 49 0.0011 34.6 8.2 96 122-227 435-538 (799)
21 PF13432 TPR_16: Tetratricopep 57.0 24 0.00052 23.6 4.3 41 10-51 2-42 (65)
22 KOG4759 Ribosome recycling fac 57.0 36 0.00079 31.1 6.4 71 36-109 183-253 (263)
23 PF13176 TPR_7: Tetratricopept 53.2 17 0.00038 22.2 2.7 26 8-33 2-27 (36)
24 smart00028 TPR Tetratricopepti 52.9 32 0.0007 17.8 3.8 29 8-36 4-32 (34)
25 TIGR00496 frr ribosome recycli 51.5 32 0.0007 29.3 5.0 73 36-109 94-166 (176)
26 cd02682 MIT_AAA_Arch MIT: doma 50.2 80 0.0017 23.4 6.3 27 7-33 8-34 (75)
27 TIGR02917 PEP_TPR_lipo putativ 48.4 2.7E+02 0.006 27.2 13.8 29 8-36 468-496 (899)
28 PF13432 TPR_16: Tetratricopep 47.8 37 0.0008 22.7 4.0 32 5-36 31-62 (65)
29 KOG1840 Kinesin light chain [C 47.1 57 0.0012 32.5 6.6 56 147-204 300-355 (508)
30 PF13414 TPR_11: TPR repeat; P 47.0 85 0.0019 21.0 6.6 44 7-51 5-48 (69)
31 cd00520 RRF Ribosome recycling 46.9 43 0.00092 28.6 5.1 73 36-109 99-171 (179)
32 cd02656 MIT MIT: domain contai 46.0 70 0.0015 22.8 5.4 27 7-33 8-34 (75)
33 PRK00083 frr ribosome recyclin 45.1 54 0.0012 28.2 5.4 73 36-109 103-175 (185)
34 PRK14720 transcript cleavage f 42.0 61 0.0013 34.6 6.2 89 103-207 88-182 (906)
35 PF12569 NARP1: NMDA receptor- 40.5 3.9E+02 0.0084 26.7 15.4 62 140-203 156-223 (517)
36 PRK11447 cellulose synthase su 40.3 4.4E+02 0.0095 28.6 12.5 58 8-67 606-663 (1157)
37 PF10083 DUF2321: Uncharacteri 39.2 1.6E+02 0.0036 24.9 7.2 34 23-56 83-116 (158)
38 PRK10049 pgaA outer membrane p 35.8 5.1E+02 0.011 26.7 13.7 27 10-36 88-114 (765)
39 smart00745 MIT Microtubule Int 35.1 1.4E+02 0.003 21.2 5.5 27 7-33 10-36 (77)
40 PF13371 TPR_9: Tetratricopept 34.8 70 0.0015 21.6 3.8 29 8-36 32-60 (73)
41 PF13371 TPR_9: Tetratricopept 34.2 70 0.0015 21.6 3.8 37 12-49 2-38 (73)
42 PF14559 TPR_19: Tetratricopep 32.4 54 0.0012 21.9 2.9 32 6-37 26-57 (68)
43 cd02678 MIT_VPS4 MIT: domain c 32.2 1.4E+02 0.003 21.4 5.2 27 7-33 8-34 (75)
44 PF13424 TPR_12: Tetratricopep 31.1 77 0.0017 21.8 3.6 34 168-203 1-34 (78)
45 COG2250 Uncharacterized conser 29.8 3E+02 0.0064 22.1 9.0 103 6-109 14-129 (132)
46 TIGR02795 tol_pal_ybgF tol-pal 28.7 1.9E+02 0.0041 20.8 5.5 30 7-36 4-33 (119)
47 KOG1917 Membrane-associated he 27.9 40 0.00086 36.0 2.1 48 160-215 497-544 (1125)
48 cd02683 MIT_1 MIT: domain cont 27.5 1.4E+02 0.0031 21.8 4.5 28 6-33 7-34 (77)
49 PRK15179 Vi polysaccharide bio 26.2 6.4E+02 0.014 26.1 10.5 127 8-160 89-218 (694)
50 cd02684 MIT_2 MIT: domain cont 25.8 2.2E+02 0.0048 20.7 5.3 27 7-33 8-34 (75)
51 TIGR02917 PEP_TPR_lipo putativ 24.7 6.7E+02 0.014 24.5 16.0 29 8-36 604-632 (899)
52 PF04212 MIT: MIT (microtubule 24.4 1.9E+02 0.0041 20.1 4.6 27 7-33 7-33 (69)
53 PF02701 zf-Dof: Dof domain, z 23.6 34 0.00073 24.7 0.5 16 208-223 16-31 (63)
54 PF03635 Vps35: Vacuolar prote 23.0 3.5E+02 0.0076 28.4 8.0 40 146-185 701-741 (762)
55 PF13431 TPR_17: Tetratricopep 22.9 65 0.0014 19.6 1.7 33 152-194 1-33 (34)
56 PF12895 Apc3: Anaphase-promot 22.7 1.4E+02 0.0031 21.0 3.8 22 9-30 62-83 (84)
57 PF09324 DUF1981: Domain of un 22.6 2.8E+02 0.0062 20.5 5.5 36 36-71 28-67 (86)
58 PF09969 DUF2203: Uncharacteri 22.6 4E+02 0.0087 21.2 7.4 65 38-102 3-67 (120)
59 PF10516 SHNi-TPR: SHNi-TPR; 22.6 74 0.0016 20.4 1.9 37 128-167 2-38 (38)
60 KOG2162 Nonsense-mediated mRNA 22.5 30 0.00066 36.6 0.2 97 118-219 121-220 (862)
61 TIGR02795 tol_pal_ybgF tol-pal 22.2 3E+02 0.0065 19.6 7.0 45 7-51 41-87 (119)
62 PRK11189 lipoprotein NlpI; Pro 22.0 1.8E+02 0.0039 26.1 5.1 37 7-43 238-274 (296)
63 PRK15359 type III secretion sy 21.4 1.4E+02 0.003 23.8 3.8 26 9-34 62-87 (144)
64 TIGR02552 LcrH_SycD type III s 21.4 3E+02 0.0066 20.6 5.7 32 6-37 18-49 (135)
65 CHL00033 ycf3 photosystem I as 21.0 3E+02 0.0066 22.0 5.8 70 117-203 32-101 (168)
66 cd05493 Bromo_ALL-1 Bromodomai 21.0 1.1E+02 0.0025 25.0 3.2 37 92-128 75-118 (131)
67 COG2956 Predicted N-acetylgluc 20.7 1.4E+02 0.0029 28.7 4.0 48 9-56 218-265 (389)
68 PF14689 SPOB_a: Sensor_kinase 20.4 96 0.0021 21.7 2.4 20 15-34 33-52 (62)
69 PF12083 DUF3560: Domain of un 20.0 1.2E+02 0.0026 24.7 3.1 28 145-173 21-48 (126)
No 1
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=3.5e-78 Score=535.65 Aligned_cols=204 Identities=67% Similarity=1.035 Sum_probs=198.6
Q ss_pred HhhHHHHHHHHHHhcCHHHHHHHHHHHhhc-C-CCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHHHH
Q 026544 5 REHHVYLARLAEQAERYDEMVEAMKKVAKL-D-VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKR 82 (237)
Q Consensus 5 reel~~~AklaeqaeRy~Dm~~~mK~vi~~-~-~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~~~ 82 (237)
|++++|+|||++||||||||+++||++++. + .+||.||||||||||||+||++|+|||+|+++|++++.+|++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999997 6 59999999999999999999999999999999999887888788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHHHhcCcccchhhccCcchHHHHHHHHHHHHHHHHHHHhc
Q 026544 83 IKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAAS 162 (237)
Q Consensus 83 i~~yk~kIe~EL~~iC~eii~lID~~Lip~~~~~eskVFy~KmKGDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~iA~~ 162 (237)
+++||++|++||..+|++|+++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|++
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~ 160 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHhhh
Q 026544 163 ELPPTHPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQTLIVVIK 209 (237)
Q Consensus 163 ~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~~~i~~~~ 209 (237)
+||||||+||||+||||||||||+++|++ ||++|++||+++|+.|+
T Consensus 161 ~L~pt~PirLgLaLN~SVF~yEI~~~~~~-A~~lAk~afd~Ai~~ld 206 (244)
T smart00101 161 ELPPTHPIRLGLALNFSVFYYEILNSPDR-ACNLAKQAFDEAIAELD 206 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 99999999999999887
No 2
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-78 Score=518.64 Aligned_cols=208 Identities=68% Similarity=1.055 Sum_probs=205.0
Q ss_pred CcchHhhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHH
Q 026544 1 MEKEREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNV 80 (237)
Q Consensus 1 m~~~reel~~~AklaeqaeRy~Dm~~~mK~vi~~~~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~ 80 (237)
|+..|++.+|+|+|+||||||+||++-||.++..+++|+.||||||||||||+||.||+|||++++++||++++++..++
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv 80 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQV 80 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHH
Confidence 78789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHHHhcCcccchhhccCcchHHHHHHHHHHHHHHHHHHH
Q 026544 81 KRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAA 160 (237)
Q Consensus 81 ~~i~~yk~kIe~EL~~iC~eii~lID~~Lip~~~~~eskVFy~KmKGDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~iA 160 (237)
.+|++|+++|+.||..||+||+++|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.++++|+.|.++|
T Consensus 81 ~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA 160 (268)
T COG5040 81 ELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIA 160 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHhhh
Q 026544 161 ASELPPTHPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQTLIVVIK 209 (237)
Q Consensus 161 ~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~~~i~~~~ 209 (237)
..+||||||||||||||||||||||+|+|++ ||.+|+.+|+++|++|.
T Consensus 161 ~teLpPT~PirLGLALNfSVFyYEIlnspdk-AC~lAKqaFDeAI~ELD 208 (268)
T COG5040 161 TTELPPTHPIRLGLALNFSVFYYEILNSPDK-ACHLAKQAFDEAISELD 208 (268)
T ss_pred hccCCCCCchhhhheecceeeeeecccCcHH-HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 99999999999999974
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=4.1e-74 Score=507.36 Aligned_cols=204 Identities=65% Similarity=1.021 Sum_probs=196.1
Q ss_pred HhhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHHHHHH
Q 026544 5 REHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIK 84 (237)
Q Consensus 5 reel~~~AklaeqaeRy~Dm~~~mK~vi~~~~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~~~i~ 84 (237)
|++++||||+++|||||+||+++||++++.+++||.|||||||+||||+||++|+|||+|++++++++.+|++..++.++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHHHhcCcccchhhccCcchHHHHHHHHHHHHHHHHHHHhccC
Q 026544 85 EYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASEL 164 (237)
Q Consensus 85 ~yk~kIe~EL~~iC~eii~lID~~Lip~~~~~eskVFy~KmKGDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~iA~~~L 164 (237)
+||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+||+..|+++++++++|.++|++|+++|+++|
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHhhh
Q 026544 165 PPTHPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQTLIVVIK 209 (237)
Q Consensus 165 ~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~~~i~~~~ 209 (237)
|||||+||||+||||||||||++++++ ||+||++||+++++.++
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~-A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEK-AIEIAKQAFDEAISELD 204 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHH-HHHHHHHHHHHHHHGGG
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999 99999999999999886
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-68 Score=468.30 Aligned_cols=205 Identities=75% Similarity=1.109 Sum_probs=200.6
Q ss_pred hHhhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHHHHH
Q 026544 4 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRI 83 (237)
Q Consensus 4 ~reel~~~AklaeqaeRy~Dm~~~mK~vi~~~~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~~~i 83 (237)
+|+++|++|+++||||||+||+.+||.+++.+.+||.||||||||+|||+||++|+|||+|+++|||++.++++.++..+
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-ChhHHHHHHHhcCcccchhhccCcchHHHHHHHHHHHHHHHHHHHhc
Q 026544 84 KEYRQRVEDELAKICNDILSVIDEHLIPSSTS-GESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAAS 162 (237)
Q Consensus 84 ~~yk~kIe~EL~~iC~eii~lID~~Lip~~~~-~eskVFy~KmKGDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~iA~~ 162 (237)
..|+++|+.||..+|++++.++|++|+|+++. .|++|||+|||||||||+|||.+|++|++++++++++|+.|.++|+.
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~ 160 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKA 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988 78999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHhhh
Q 026544 163 ELPPTHPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQTLIVVIK 209 (237)
Q Consensus 163 ~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~~~i~~~~ 209 (237)
.|+||||||||||||||||||||+|.|++ ||.||+.+|+++|.++-
T Consensus 161 ~l~PthPirLgLaLnfSvf~yeilnsPe~-ac~lak~a~d~ai~eld 206 (247)
T KOG0841|consen 161 ELQPTHPIRLGLALNFSVFYYEILNSPER-ACSLAKQAFDEAIAELD 206 (247)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHcChHH-HHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999 99999999999999864
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.38 E-value=0.071 Score=37.88 Aligned_cols=54 Identities=24% Similarity=0.296 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHHH
Q 026544 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQT 203 (237)
Q Consensus 147 ~~A~~aY~~A~~iA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~~ 203 (237)
+.|.+.|++|+++ .+.+++.||.-.-...|.+..++. +++.++ |.+..+++++-
T Consensus 22 ~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~-A~~~~~~al~i 75 (78)
T PF13424_consen 22 DEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEE-ALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHH-HHHHHHHHHhh
Confidence 5699999999999 567898888777777777776665 599999 99988887763
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=88.93 E-value=22 Score=35.42 Aligned_cols=185 Identities=13% Similarity=0.168 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc-------CCCCCHHHHHHHHhhhhhhccchhhHHHHHH-hHhhhhhhhCch-
Q 026544 7 HHVYLARLAEQAERYDEMVEAMKKVAKL-------DVELTVEERNLVSVGYKNVIGARRASWRILS-SIEQKEEAKGNE- 77 (237)
Q Consensus 7 el~~~AklaeqaeRy~Dm~~~mK~vi~~-------~~eLt~EERnLLSvAyKn~i~~~R~s~R~l~-sieqk~e~~~~~- 77 (237)
.+..+|.+..+.|+|+.++...|+.++. +...=....+-|++.|-+. +..+.|..+.. ++...++..|..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456888888899999999999999865 1222223444567776553 44556666663 333344444433
Q ss_pred -hHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHHHhcCcccchhhccCcchHHHHHHHHHH
Q 026544 78 -QNVKRIKE-----YRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLK 151 (237)
Q Consensus 78 -~~~~~i~~-----yk~kIe~EL~~iC~eii~lID~~Lip~~~~~eskVFy~KmKGDyyRYlaE~~~~~~~~~~~~~A~~ 151 (237)
.....+.+ ++.-=-+|-...|+.+++|..+ ++.+..++-.. .+.|+..-..-..-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~--~~~~~~~~v~~-----------~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK--LLGASHPEVAA-----------QLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--hhccChHHHHH-----------HHHHHHHHHHHhcchhHHHH
Confidence 22222222 2333346888899999999988 34444443222 23443322222233577999
Q ss_pred HHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHh
Q 026544 152 AYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQTLIVV 207 (237)
Q Consensus 152 aY~~A~~iA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~~~i~~ 207 (237)
-|+.|+++....+++.||.-=|+--|+++-|+- +|.-++ |-++.+++++-+..-
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~e-a~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKE-AEELYKKAIQILREL 400 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhH-HHHHHHHHHHHHHhc
Confidence 999999999888999999999999999998775 599999 999999998887554
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=88.08 E-value=9.7 Score=37.70 Aligned_cols=53 Identities=11% Similarity=0.047 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHH
Q 026544 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQ 202 (237)
Q Consensus 147 ~~A~~aY~~A~~iA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~ 202 (237)
+.|...|++|+++.. ..++.++-.++ .+|.+..+|+-.++.++ |..+.+.+++
T Consensus 484 ~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~e-A~~~~~kAl~ 536 (615)
T TIGR00990 484 DEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIE-AENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHH-HHHHHHHHHh
Confidence 567888888877653 23334333222 35555666666677888 7777666554
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.87 E-value=6.8 Score=29.36 Aligned_cols=58 Identities=16% Similarity=0.004 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchhHHHH-HHHHHHHHHHhcCccHHHHHHHHHhHHHHHH
Q 026544 147 DHSLKAYEAATAAAASELPPTHPIRLGLA-LNFSVFYYEILNSPERLTCIFLFLSRQTLIV 206 (237)
Q Consensus 147 ~~A~~aY~~A~~iA~~~L~pt~PirLGLa-LN~SVF~yEIl~~~~~~A~~iA~~~~~~~i~ 206 (237)
..|.+.....++.+..+..+.++..+..+ ||.+.+++.. |++++ |....+++++-+..
T Consensus 15 ~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~-G~~~~-A~~~l~eAi~~Are 73 (94)
T PF12862_consen 15 SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRF-GHYEE-ALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh-CCHHH-HHHHHHHHHHHHHH
Confidence 34788888888888877777754555554 7888876665 99999 99998888887743
No 9
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.47 E-value=4.6 Score=23.59 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCC
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~~~~e 37 (237)
+..++.+..+.|+|+++++++++.+..+|.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999987653
No 10
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.98 E-value=2 Score=26.13 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCCc
Q 026544 147 DHSLKAYEAATAAAASELPPTHP 169 (237)
Q Consensus 147 ~~A~~aY~~A~~iA~~~L~pt~P 169 (237)
+.|...+++|+++.++-++|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 56999999999999888899998
No 11
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.97 E-value=5.8 Score=22.87 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCC
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~~~~e 37 (237)
+..+|.+..+.|+++++++.+++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 567889999999999999999999976553
No 12
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.82 E-value=6.4 Score=23.11 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~~~~ 36 (237)
+..++++..+.|+++.+..+++++++.+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56788999999999999999999988755
No 13
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=69.87 E-value=9.7 Score=24.27 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCC
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~~~~e 37 (237)
...+|+...+.|++++..+..+++++..|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999987664
No 14
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=68.51 E-value=12 Score=29.91 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=46.2
Q ss_pred hHHHHHHHhcCcccchhhccCc-chHHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHH---HHHHHHHhcCccH
Q 026544 118 STVFYYKMKGDYYRYLAEFKGA-DDRKEAADHSLKAYEAATAAAASELPPTHPIRLGLALNF---SVFYYEILNSPER 191 (237)
Q Consensus 118 skVFy~KmKGDyyRYlaE~~~~-~~~~~~~~~A~~aY~~A~~iA~~~L~pt~PirLGLaLN~---SVF~yEIl~~~~~ 191 (237)
+-.|-+...|+.+..+|+...+ +-+....-.|.+||.+|..++ |.-+.-|=..-+- ..||-+.+...++
T Consensus 31 ~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls-----p~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 31 SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS-----PDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC-----hhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3348999999999999998765 456667888999999987654 4334444444444 5555555544444
No 15
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=67.99 E-value=13 Score=21.86 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCC
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~~~~e 37 (237)
+..++.+..+.|+|++.+.+.+++++.+|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456788888999999999999999988764
No 16
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=64.05 E-value=27 Score=23.57 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHH
Q 026544 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQ 202 (237)
Q Consensus 147 ~~A~~aY~~A~~iA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~ 202 (237)
+.|...|++|+++ .|.| -.+..|.+.-++..-++.++ |+.....+++
T Consensus 20 ~~A~~~~~~ai~~-----~p~~---~~~~~~~g~~~~~~~~~~~~-A~~~~~~al~ 66 (69)
T PF13414_consen 20 EEAIEYFEKAIEL-----DPNN---AEAYYNLGLAYMKLGKDYEE-AIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHH-----STTH---HHHHHHHHHHHHHTTTHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhCccHHH-HHHHHHHHHH
Confidence 5699999999876 2444 44778888776665337889 8888777664
No 17
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.56 E-value=34 Score=30.13 Aligned_cols=80 Identities=26% Similarity=0.378 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhccchhhHHHHHH----hHhhhhhhhCchhHHHHHHH
Q 026544 10 YLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILS----SIEQKEEAKGNEQNVKRIKE 85 (237)
Q Consensus 10 ~~AklaeqaeRy~Dm~~~mK~vi~~~~eLt~EERnLLSvAyKn~i~~~R~s~R~l~----sieqk~e~~~~~~~~~~i~~ 85 (237)
|++++..+..||+-|-.....-+ +..++|-.-+-...+.-+...+..+|--. |++...+
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL----~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~Le------------- 185 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL----EKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLE------------- 185 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 56777777778776654443322 24455555556666666666666666541 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026544 86 YRQRVEDELAKICNDILSVID 106 (237)
Q Consensus 86 yk~kIe~EL~~iC~eii~lID 106 (237)
-+.+=..||..||+|+|.-++
T Consensus 186 QK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 186 QKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 111223699999999987553
No 18
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=59.89 E-value=23 Score=30.86 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026544 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (237)
Q Consensus 36 ~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~~~i~~yk~kIe~EL~~iC~eii~lID~~L 109 (237)
|+||.|-|.=|..-.|...-.-|-|.|.+.---. ++.+...+--..-++-..+.++|+..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda~-d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAN-DKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988999998842111 111100000112355667888888888888888888765
No 19
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=58.60 E-value=33 Score=28.60 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026544 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (237)
Q Consensus 36 ~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~~~i~~yk~kIe~EL~~iC~eii~lID~~L 109 (237)
|++|.|-|.-+....|......|.+.|.+..--.+.-.+ .......-++-..+.+++|..+.++.+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999986432221100 0000002345556777888888877777777643
No 20
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=57.97 E-value=49 Score=34.58 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=66.0
Q ss_pred HHHHhcCcccchhhcc-CcchHHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 026544 122 YYKMKGDYYRYLAEFK-GADDRKEAADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERLTCIFLFLS 200 (237)
Q Consensus 122 y~KmKGDyyRYlaE~~-~~~~~~~~~~~A~~aY~~A~~iA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~ 200 (237)
.+.+-|=-|-..|--. ..++|+..-.++.++|++|.+ +.|+|| -...+.|++|-+ .++-+. |...++++
T Consensus 435 ~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp---~~if~lalq~A~-~R~l~s-Al~~~~ea 504 (799)
T KOG4162|consen 435 GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP---LVIFYLALQYAE-QRQLTS-ALDYAREA 504 (799)
T ss_pred HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc---hHHHHHHHHHHH-HHhHHH-HHHHHHHH
Confidence 4566677776666655 456788888999999999974 678999 234555666554 488888 99998888
Q ss_pred HHH-------HHHhhheeeeeccccccccchhhh
Q 026544 201 RQT-------LIVVIKFSFHFNYVFKYGIHVVDY 227 (237)
Q Consensus 201 ~~~-------~i~~~~~~~~~~~~~~~~~~~~~~ 227 (237)
+.- ++.-|-++|=--.=+|-++.|||.
T Consensus 505 L~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 505 LALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 876 233355555555556666666664
No 21
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=57.00 E-value=24 Score=23.62 Aligned_cols=41 Identities=29% Similarity=0.273 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhh
Q 026544 10 YLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYK 51 (237)
Q Consensus 10 ~~AklaeqaeRy~Dm~~~mK~vi~~~~eLt~EERnLLSvAyK 51 (237)
.+|...-+.|+|+++...+++++...|. +.+=+..+..++-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILY 42 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 4678888999999999999999987654 4444445554443
No 22
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=57.00 E-value=36 Score=31.08 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026544 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (237)
Q Consensus 36 ~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~~~i~~yk~kIe~EL~~iC~eii~lID~~L 109 (237)
|+.|.|-|.-|+...|......|.|+|-+..---+...+..+ ..-++=..+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999999999999999885432222212111 02245556888999999999999888765
No 23
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=53.22 E-value=17 Score=22.18 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAK 33 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~ 33 (237)
+..+|.+..+.|.|+.++++.++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45789999999999999999999653
No 24
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=52.88 E-value=32 Score=17.79 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~~~~ 36 (237)
+..+|.+..+.++|++.+.+..+.+...|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34677888889999999999998876544
No 25
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=51.47 E-value=32 Score=29.33 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026544 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (237)
Q Consensus 36 ~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~~~i~~yk~kIe~EL~~iC~eii~lID~~L 109 (237)
|+||.|-|.=|....|...-..|.+.|.+..--.+. .+...+.-..-++-..+.++|+..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDK-VKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999888889988884211110 0000000011245556677777777777777777654
No 26
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=50.23 E-value=80 Score=23.39 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 026544 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (237)
Q Consensus 7 el~~~AklaeqaeRy~Dm~~~mK~vi~ 33 (237)
.++-+|--+++.|||++++.+=+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456677788999999999988777765
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=48.40 E-value=2.7e+02 Score=27.23 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~~~~ 36 (237)
...++.+..+.|+++++..++.++++.+|
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 496 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEP 496 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Confidence 34556666666777776666666665544
No 28
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=47.84 E-value=37 Score=22.67 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=26.2
Q ss_pred HhhHHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 026544 5 REHHVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (237)
Q Consensus 5 reel~~~AklaeqaeRy~Dm~~~mK~vi~~~~ 36 (237)
.+-+..++.+..+.|+|++.+....++++..|
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34566889999999999999999999987765
No 29
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=47.11 E-value=57 Score=32.49 Aligned_cols=56 Identities=13% Similarity=-0.018 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHHHH
Q 026544 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQTL 204 (237)
Q Consensus 147 ~~A~~aY~~A~~iA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~~~ 204 (237)
..|...++.|++|.++ +..++|=+++-.|+-.--.+.-++..++ |+.+.+.++.-.
T Consensus 300 ~EA~~~~e~Al~I~~~-~~~~~~~~v~~~l~~~~~~~~~~~~~Ee-a~~l~q~al~i~ 355 (508)
T KOG1840|consen 300 AEAEEYCERALEIYEK-LLGASHPEVAAQLSELAAILQSMNEYEE-AKKLLQKALKIY 355 (508)
T ss_pred HHHHHHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHH
Confidence 4689999999999976 6667788999999999999999999999 999988776543
No 30
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=47.00 E-value=85 Score=20.98 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhh
Q 026544 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYK 51 (237)
Q Consensus 7 el~~~AklaeqaeRy~Dm~~~mK~vi~~~~eLt~EERnLLSvAyK 51 (237)
.+..+|...-+.|+|++++.+.++.++.+|.- .+=..-++.+|.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~ 48 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYM 48 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 45678889999999999999999999887652 333333444433
No 31
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=46.93 E-value=43 Score=28.55 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026544 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (237)
Q Consensus 36 ~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~~~i~~yk~kIe~EL~~iC~eii~lID~~L 109 (237)
|++|.|-|.=|....|...-..|.+.|.+..--.+.- +.....-..-++-..+.++|+..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999998998889988888899888743211110 000000001234445667777777777777777654
No 32
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=46.03 E-value=70 Score=22.76 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 026544 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (237)
Q Consensus 7 el~~~AklaeqaeRy~Dm~~~mK~vi~ 33 (237)
+++-.|--+++.|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355566677889999999999998885
No 33
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=45.14 E-value=54 Score=28.20 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026544 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (237)
Q Consensus 36 ~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~~~i~~yk~kIe~EL~~iC~eii~lID~~L 109 (237)
|+||.|-|.=|....|...-.-|.+.|.+..--.+.-.+ ..+.-..-++-..+.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999899888998888889988884321111000 0000001244455677777777777777777654
No 34
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=42.03 E-value=61 Score=34.60 Aligned_cols=89 Identities=16% Similarity=0.047 Sum_probs=58.5
Q ss_pred HHhhhccCCCCCCChhHHHHHHHhcCccc------chhhccCcchHHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHH
Q 026544 103 SVIDEHLIPSSTSGESTVFYYKMKGDYYR------YLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTHPIRLGLAL 176 (237)
Q Consensus 103 ~lID~~Lip~~~~~eskVFy~KmKGDyyR------YlaE~~~~~~~~~~~~~A~~aY~~A~~iA~~~L~pt~PirLGLaL 176 (237)
+++|. .|...+.....||++..|||+. .+|++-..- .-.++|..+|++++++ .|.||. +|
T Consensus 88 ~~l~~--~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~---g~~~ka~~~yer~L~~-----D~~n~~----aL 153 (906)
T PRK14720 88 NLIDS--FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKL---NENKKLKGVWERLVKA-----DRDNPE----IV 153 (906)
T ss_pred hhhhh--cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHc---CChHHHHHHHHHHHhc-----CcccHH----HH
Confidence 44442 3444445666788888887763 335543221 1235688899988764 378874 55
Q ss_pred HHHHHHHHHhcCccHHHHHHHHHhHHHHHHh
Q 026544 177 NFSVFYYEILNSPERLTCIFLFLSRQTLIVV 207 (237)
Q Consensus 177 N~SVF~yEIl~~~~~~A~~iA~~~~~~~i~~ 207 (237)
|+=-++|.-. |.++ |..++..|.+..|..
T Consensus 154 Nn~AY~~ae~-dL~K-A~~m~~KAV~~~i~~ 182 (906)
T PRK14720 154 KKLATSYEEE-DKEK-AITYLKKAIYRFIKK 182 (906)
T ss_pred HHHHHHHHHh-hHHH-HHHHHHHHHHHHHhh
Confidence 5555555555 9999 999999999998755
No 35
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=40.50 E-value=3.9e+02 Score=26.68 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCC------CCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHHH
Q 026544 140 DDRKEAADHSLKAYEAATAAAASELPP------THPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQT 203 (237)
Q Consensus 140 ~~~~~~~~~A~~aY~~A~~iA~~~L~p------t~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~~ 203 (237)
.++..+++.-...|...++.. ..+++ ..|.-+--++.|---+|+.+++.++ |++...++++-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~-~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~-Al~~Id~aI~h 223 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESN-GSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK-ALEYIDKAIEH 223 (517)
T ss_pred hhHHHHHHHHHHHHHHhhccc-CCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHhc
Confidence 456667777777777766543 23332 3477777788888889999999999 99987766654
No 36
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=40.28 E-value=4.4e+02 Score=28.57 Aligned_cols=58 Identities=19% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhccchhhHHHHHHhH
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSI 67 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~~~~eLt~EERnLLSvAyKn~i~~~R~s~R~l~si 67 (237)
.+.+|.+..+.|++++++.+++++++..|+ +.+=+.-+..+|... +....+...+..+
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~-g~~~eA~~~l~~l 663 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQ-GDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 456788888889999999999999887766 344455555555444 5556666666544
No 37
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.18 E-value=1.6e+02 Score=24.94 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhccc
Q 026544 23 EMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGA 56 (237)
Q Consensus 23 Dm~~~mK~vi~~~~eLt~EERnLLSvAyKn~i~~ 56 (237)
..++..+++++...+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 4567778888888999999999999998887653
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=35.84 E-value=5.1e+02 Score=26.68 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 026544 10 YLARLAEQAERYDEMVEAMKKVAKLDV 36 (237)
Q Consensus 10 ~~AklaeqaeRy~Dm~~~mK~vi~~~~ 36 (237)
.+|.+.-..|++++++..+++++...|
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P 114 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAP 114 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 334444444555555555555544433
No 39
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=35.08 E-value=1.4e+02 Score=21.18 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 026544 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (237)
Q Consensus 7 el~~~AklaeqaeRy~Dm~~~mK~vi~ 33 (237)
+++..|--.|++|+|++++.+.++.++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667677889999999999988875
No 40
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=34.81 E-value=70 Score=21.63 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~~~~ 36 (237)
...+|.+..+.|+|++.++.+.++++.+|
T Consensus 32 ~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 32 WLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34566677777777777777777776554
No 41
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=34.24 E-value=70 Score=21.62 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=26.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHhh
Q 026544 12 ARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVG 49 (237)
Q Consensus 12 AklaeqaeRy~Dm~~~mK~vi~~~~eLt~EERnLLSvA 49 (237)
+.++-+.++|+.+++++..++..+|+ +..-+.....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~ 38 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARC 38 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHH
Confidence 45677899999999999999998776 44433333333
No 42
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=32.42 E-value=54 Score=21.88 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCC
Q 026544 6 EHHVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (237)
Q Consensus 6 eel~~~AklaeqaeRy~Dm~~~mK~vi~~~~e 37 (237)
+-.+.+|++.-+.|+++++.+.+++++..+|+
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 44567888888888888888888888766554
No 43
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=32.24 E-value=1.4e+02 Score=21.40 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 026544 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (237)
Q Consensus 7 el~~~AklaeqaeRy~Dm~~~mK~vi~ 33 (237)
+++..|--.+++|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667677889999999999999885
No 44
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=31.07 E-value=77 Score=21.83 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=27.1
Q ss_pred CchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHHH
Q 026544 168 HPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQT 203 (237)
Q Consensus 168 ~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~~ 203 (237)
||.......|.+..|+ -+++.++ |+...+++++-
T Consensus 1 H~~~a~~~~~la~~~~-~~~~~~~-A~~~~~~al~~ 34 (78)
T PF13424_consen 1 HPDTANAYNNLARVYR-ELGRYDE-ALDYYEKALDI 34 (78)
T ss_dssp -HHHHHHHHHHHHHHH-HTT-HHH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HcCCHHH-HHHHHHHHHHH
Confidence 7888888899988888 4599999 99988888776
No 45
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=29.78 E-value=3e+02 Score=22.14 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHhhc----------C-CCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhh
Q 026544 6 EHHVYLARLAEQAERYDEMVEAMKKVAKL----------D-VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAK 74 (237)
Q Consensus 6 eel~~~AklaeqaeRy~Dm~~~mK~vi~~----------~-~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~ 74 (237)
...+-.|+..-..|.|+.++-.-.|.++. + ++-|..=+.||....+. +.....-++.+..++..--..
T Consensus 14 ~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~l~~Ll~~l~~~-~~~~e~~~~~~~~Le~~yi~s 92 (132)
T COG2250 14 ERDLKLAKRDLELGDYDLACFHAQQAVELALKALLIRLGGEPPKTHSLRELLRELSRE-LEVPEEILECARELEKRYILS 92 (132)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhHh
Confidence 34456677777889999999887877752 3 67788888888888764 444444444444444332111
Q ss_pred CchhH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026544 75 GNEQN--VKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (237)
Q Consensus 75 ~~~~~--~~~i~~yk~kIe~EL~~iC~eii~lID~~L 109 (237)
.-+.. ......|-+...+++......|++++...+
T Consensus 93 rY~d~~~~~p~e~~~~~~ae~~l~~A~~v~e~v~~~l 129 (132)
T COG2250 93 RYPDAEYEGPLELYSKEDAEELLKTAEKVLELVEGLL 129 (132)
T ss_pred cCccccccCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11110 112466777788888889999999887654
No 46
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=28.74 E-value=1.9e+02 Score=20.77 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 026544 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (237)
Q Consensus 7 el~~~AklaeqaeRy~Dm~~~mK~vi~~~~ 36 (237)
.+...|....+.|+|+++++.+.+++...|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 33 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP 33 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 456677778888999999999999987654
No 47
>KOG1917 consensus Membrane-associated hematopoietic protein [General function prediction only]
Probab=27.93 E-value=40 Score=36.05 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=34.7
Q ss_pred HhccCCCCCchhHHHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHhhheeeeec
Q 026544 160 AASELPPTHPIRLGLALNFSVFYYEILNSPERLTCIFLFLSRQTLIVVIKFSFHFN 215 (237)
Q Consensus 160 A~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~iA~~~~~~~i~~~~~~~~~~ 215 (237)
++..+.-..---|++..|-|||+--....-++ +..+|-+.++ ||||+-
T Consensus 497 ~ka~l~l~~h~~la~~mnt~vfhs~mid~lee----~lveTsdlsl----fcfy~~ 544 (1125)
T KOG1917|consen 497 TKALLDLAKHWELALMMNTSVFHSKMIDSLEE----MLVETSDLSL----FCFYNK 544 (1125)
T ss_pred HhhHhhhhhCHHHHHHHHHHHHHHHHHHHHHH----HHHhccchhh----hhhhHH
Confidence 34445555567899999999999999888887 4445555544 888863
No 48
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=27.50 E-value=1.4e+02 Score=21.85 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 026544 6 EHHVYLARLAEQAERYDEMVEAMKKVAK 33 (237)
Q Consensus 6 eel~~~AklaeqaeRy~Dm~~~mK~vi~ 33 (237)
-+++..|--.+++|+|++++.+-.+.++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567778888999999999998887775
No 49
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=26.24 E-value=6.4e+02 Score=26.15 Aligned_cols=127 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHHHHHHHHH
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYR 87 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~~~~eLt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~~~i~~yk 87 (237)
+.-+|.+.++.|||||.......+++..|+. ..|.-+.....+.-=|.=.+++.-+.-...+.......--+
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDS--------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCh---hHHHHHHHhcCcccchhhccCcchHHHHHHHHHHHHHHHHHHH
Q 026544 88 QRVEDELAKICNDILSVIDEHLIPSSTSGE---STVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAA 160 (237)
Q Consensus 88 ~kIe~EL~~iC~eii~lID~~Lip~~~~~e---skVFy~KmKGDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~iA 160 (237)
.+.-.++-..+ +.+.+.++.+-|.+.+++ +.---+|-.|+.-. |..+|++|.+..
T Consensus 161 a~~l~~~g~~~-~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~-----------------A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSE-QADACFERLSRQHPEFENGYVGWAQSLTRRGALWR-----------------ARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH-----------------HHHHHHHHHHhh
No 50
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=25.83 E-value=2.2e+02 Score=20.67 Aligned_cols=27 Identities=11% Similarity=-0.063 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 026544 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (237)
Q Consensus 7 el~~~AklaeqaeRy~Dm~~~mK~vi~ 33 (237)
+++-.|--.+.+|+|++++.++.+.++
T Consensus 8 ~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 8 ALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456666666889999999999988875
No 51
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=24.73 E-value=6.7e+02 Score=24.54 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 026544 8 HVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (237)
Q Consensus 8 l~~~AklaeqaeRy~Dm~~~mK~vi~~~~ 36 (237)
...++.+..+.|+|++++...+++++.+|
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQP 632 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33455555556666666666666655433
No 52
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=24.38 E-value=1.9e+02 Score=20.09 Aligned_cols=27 Identities=26% Similarity=0.323 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 026544 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (237)
Q Consensus 7 el~~~AklaeqaeRy~Dm~~~mK~vi~ 33 (237)
+++..|--+|+.|+|++++++=++.++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788888999999999998888774
No 53
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=23.65 E-value=34 Score=24.72 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=12.3
Q ss_pred hheeeeeccccccccc
Q 026544 208 IKFSFHFNYVFKYGIH 223 (237)
Q Consensus 208 ~~~~~~~~~~~~~~~~ 223 (237)
-+||+||||-..|-=|
T Consensus 16 TKFcYyNNy~~~QPR~ 31 (63)
T PF02701_consen 16 TKFCYYNNYNLSQPRY 31 (63)
T ss_pred CEEEeecCCCCCCcch
Confidence 4799999998776443
No 54
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=23.04 E-value=3.5e+02 Score=28.36 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchhHHH-HHHHHHHHHHH
Q 026544 146 ADHSLKAYEAATAAAASELPPTHPIRLGL-ALNFSVFYYEI 185 (237)
Q Consensus 146 ~~~A~~aY~~A~~iA~~~L~pt~PirLGL-aLN~SVF~yEI 185 (237)
-++.++|-|+|+.+|...+.|.-.+-|=+ +||..+|||+-
T Consensus 701 ~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 701 GKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEK 741 (762)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhc
Confidence 36799999999999988887544443333 89999999954
No 55
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=22.87 E-value=65 Score=19.57 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=21.6
Q ss_pred HHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHhcCccHHHH
Q 026544 152 AYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERLTC 194 (237)
Q Consensus 152 aY~~A~~iA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~ 194 (237)
+|++|++ +.|.|| ..-.|++++|+.. |+.++ |.
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~~-g~~~~-A~ 33 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLNQ-GDYEE-AI 33 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHHC-cCHHh-hc
Confidence 3666665 346665 4467888877754 88888 75
No 56
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=22.73 E-value=1.4e+02 Score=20.95 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHH
Q 026544 9 VYLARLAEQAERYDEMVEAMKK 30 (237)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mK~ 30 (237)
...|+...+.|+|+++++.+++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 3446666667777777666654
No 57
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=22.65 E-value=2.8e+02 Score=20.47 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHhhhhhhcc----chhhHHHHHHhHhhhh
Q 026544 36 VELTVEERNLVSVGYKNVIG----ARRASWRILSSIEQKE 71 (237)
Q Consensus 36 ~eLt~EERnLLSvAyKn~i~----~~R~s~R~l~sieqk~ 71 (237)
..-+.+-|.+...+..+++. ..|++|+++-++-...
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~a 67 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAA 67 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 34567788888888777776 6799999997665443
No 58
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=22.59 E-value=4e+02 Score=21.24 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=39.4
Q ss_pred CCHHHHHHHHhhhhhhccchhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026544 38 LTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDIL 102 (237)
Q Consensus 38 Lt~EERnLLSvAyKn~i~~~R~s~R~l~sieqk~e~~~~~~~~~~i~~yk~kIe~EL~~iC~eii 102 (237)
+|.+|-|-+--..+.++...+...+.+..+++..............+.-.+.+..++...++++-
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 67 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIE 67 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 57788887777788888888888888877655432221111223334444556666666666543
No 59
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=22.57 E-value=74 Score=20.38 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=25.5
Q ss_pred CcccchhhccCcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026544 128 DYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPT 167 (237)
Q Consensus 128 DyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~iA~~~L~pt 167 (237)
|.|-=++|+.-..++- +.|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 3344467776554443 468888999999987777763
No 60
>KOG2162 consensus Nonsense-mediated mRNA decay protein [RNA processing and modification]
Probab=22.55 E-value=30 Score=36.61 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=64.3
Q ss_pred hHHHHHHH---hcCcccchhhccCcchHHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHhcCccHHHH
Q 026544 118 STVFYYKM---KGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERLTC 194 (237)
Q Consensus 118 skVFy~Km---KGDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~iA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~ 194 (237)
+++-+++. .||.-||..++..++..- -.+.+...|.+|..+.=+--.|. -+||...|+..+.|.-+ -.-+-+
T Consensus 121 a~~~~h~~~~~lgdl~ry~~~~~~~~~~~-~~~~~~~~y~ea~~~~p~~g~p~--~ql~~l~~~~~~~~~~~--y~~~~~ 195 (862)
T KOG2162|consen 121 ARRLCHRCLYYLGDLSRYQTQLAIADTDL-EWESGSPYYLEAASLYPQSGMPH--NQLGILANYKNDEFLST--YHYLRS 195 (862)
T ss_pred HHHHHhhheeecchHHHHHHHHhhccccc-chhhcChHHHHHHHhccccCChH--HHHHHHhhhhhHHHHHH--HHHHHH
Confidence 44444444 699999999999887655 45667888888877653322232 38999999998877651 111122
Q ss_pred HHHHHhHHHHHHhhheeeeeccccc
Q 026544 195 IFLFLSRQTLIVVIKFSFHFNYVFK 219 (237)
Q Consensus 195 ~iA~~~~~~~i~~~~~~~~~~~~~~ 219 (237)
......|-.++.-++..|=.|.-++
T Consensus 196 l~~~~~f~~a~~Nl~~~f~k~~~~~ 220 (862)
T KOG2162|consen 196 LLVEISFKGASENLKKLFDKNRLSS 220 (862)
T ss_pred HHhhcccchhhhHHHHHHHHHhhcc
Confidence 2333467777777888877776664
No 61
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=22.23 E-value=3e+02 Score=19.64 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcCCC--CCHHHHHHHHhhhh
Q 026544 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVE--LTVEERNLVSVGYK 51 (237)
Q Consensus 7 el~~~AklaeqaeRy~Dm~~~mK~vi~~~~e--Lt~EERnLLSvAyK 51 (237)
-...++.+..+.|+|++++...+.++...|. ...+=...+..++.
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 4567899999999999999999999876554 33344444455544
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=22.02 E-value=1.8e+02 Score=26.07 Aligned_cols=37 Identities=27% Similarity=0.199 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCHHHH
Q 026544 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEER 43 (237)
Q Consensus 7 el~~~AklaeqaeRy~Dm~~~mK~vi~~~~eLt~EER 43 (237)
-..+++++.++.|++++++.+.++++..+|.=..|-|
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4568899999999999999999999987764333333
No 63
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=21.39 E-value=1.4e+02 Score=23.76 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhc
Q 026544 9 VYLARLAEQAERYDEMVEAMKKVAKL 34 (237)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mK~vi~~ 34 (237)
..+|.+..+.|+|++++.+..+++..
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34445555555555555555555544
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=21.36 E-value=3e+02 Score=20.55 Aligned_cols=32 Identities=31% Similarity=0.268 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCC
Q 026544 6 EHHVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (237)
Q Consensus 6 eel~~~AklaeqaeRy~Dm~~~mK~vi~~~~e 37 (237)
+....+|...-+.|+|++....++++++.+|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 49 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY 49 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 44667888888899999999999998876554
No 65
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=21.02 E-value=3e+02 Score=21.96 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=41.9
Q ss_pred hhHHHHHHHhcCcccchhhccCcchHHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHhcCccHHHHHH
Q 026544 117 ESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERLTCIF 196 (237)
Q Consensus 117 eskVFy~KmKGDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~iA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~~A~~i 196 (237)
+.+..++-..|-.+.-. + + .+.|...|++|+.+. |.++.......|.++. |..+++.++ |...
T Consensus 32 ~~~a~~~~~~g~~~~~~-----g-~----~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~-~~~~g~~~e-A~~~ 94 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSE-----G-E----YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLI-HTSNGEHTK-ALEY 94 (168)
T ss_pred hHHHHHHHHHHHHHHHc-----C-C----HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHH-HHHcCCHHH-HHHH
Confidence 34555555556555433 1 1 246888888888763 2233333345565544 455699999 9998
Q ss_pred HHHhHHH
Q 026544 197 LFLSRQT 203 (237)
Q Consensus 197 A~~~~~~ 203 (237)
...++..
T Consensus 95 ~~~Al~~ 101 (168)
T CHL00033 95 YFQALER 101 (168)
T ss_pred HHHHHHh
Confidence 8777753
No 66
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=21.00 E-value=1.1e+02 Score=25.04 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCC-------hhHHHHHHHhcC
Q 026544 92 DELAKICNDILSVIDEHLIPSSTSG-------ESTVFYYKMKGD 128 (237)
Q Consensus 92 ~EL~~iC~eii~lID~~Lip~~~~~-------eskVFy~KmKGD 128 (237)
+=+.++|+||+.+|...|......+ -.|-||+|.-=+
T Consensus 75 ~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 75 TSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred ehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 3567799999999988885433333 256788876433
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=20.74 E-value=1.4e+02 Score=28.73 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhccc
Q 026544 9 VYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGA 56 (237)
Q Consensus 9 ~~~AklaeqaeRy~Dm~~~mK~vi~~~~eLt~EERnLLSvAyKn~i~~ 56 (237)
+-+.++.-+-|.|+-+++....+.+.++++..|--..|..||..+=.+
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 567788888899999999999999999999999999999999876544
No 68
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=20.38 E-value=96 Score=21.65 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=15.9
Q ss_pred HHHhcCHHHHHHHHHHHhhc
Q 026544 15 AEQAERYDEMVEAMKKVAKL 34 (237)
Q Consensus 15 aeqaeRy~Dm~~~mK~vi~~ 34 (237)
.=|.|+|+++.+|+++++..
T Consensus 33 llqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 33 LLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 35789999999999998753
No 69
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=20.02 E-value=1.2e+02 Score=24.71 Aligned_cols=28 Identities=46% Similarity=0.584 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHH
Q 026544 145 AADHSLKAYEAATAAAASELPPTHPIRLG 173 (237)
Q Consensus 145 ~~~~A~~aY~~A~~iA~~~L~pt~PirLG 173 (237)
....|..+|+.+-+++ +.+|+.-||-.|
T Consensus 21 a~~~s~~~~~~a~~~~-~~ip~GQPIlVG 48 (126)
T PF12083_consen 21 AAARSEAAYEAANRMA-EAIPFGQPILVG 48 (126)
T ss_pred HHHHHHHHHHHHHHHH-hccCCCCCeecc
Confidence 4567888999999988 579999999888
Done!