Query 026545
Match_columns 237
No_of_seqs 125 out of 524
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 09:25:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00391 transport protein par 100.0 3.1E-57 6.7E-62 383.2 16.2 167 25-193 1-167 (168)
2 KOG3315 Transport protein part 100.0 4.9E-56 1.1E-60 373.1 14.4 187 2-194 4-190 (191)
3 PF04051 TRAPP: Transport prot 100.0 2.6E-48 5.5E-53 322.6 15.7 150 29-184 1-151 (152)
4 COG5128 Transport protein part 100.0 1.8E-48 3.9E-53 327.6 11.6 184 10-194 25-208 (208)
5 KOG3316 Transport protein part 100.0 4E-43 8.7E-48 290.3 11.6 147 28-184 5-162 (163)
6 KOG3330 Transport protein part 100.0 8.2E-33 1.8E-37 230.4 8.1 165 18-186 9-174 (183)
7 COG1719 Predicted hydrocarbon 95.1 0.57 1.2E-05 39.4 12.0 112 50-184 46-157 (158)
8 TIGR02019 BchJ bacteriochlorop 85.4 4.7 0.0001 35.2 7.8 134 23-180 42-188 (188)
9 PF02830 V4R: V4R domain; Int 76.5 3.7 8E-05 28.8 3.4 42 138-181 19-61 (62)
10 PF09536 DUF2378: Protein of u 70.7 8.3 0.00018 33.2 4.8 38 139-181 138-176 (178)
11 TIGR02265 Mxa_TIGR02265 Myxoco 62.6 14 0.00031 31.9 4.7 38 139-181 139-177 (179)
12 KOG0037 Ca2+-binding protein, 43.4 82 0.0018 28.3 6.4 76 22-100 108-193 (221)
13 PF06505 XylR_N: Activator of 43.4 69 0.0015 25.3 5.3 42 25-71 25-66 (103)
14 PF05266 DUF724: Protein of un 36.7 1.4E+02 0.0029 26.0 6.7 52 23-74 41-103 (190)
15 PRK14741 spoVM stage V sporula 35.5 25 0.00054 21.1 1.3 14 142-155 10-23 (26)
16 PF11565 PorB: Alpha helical P 32.8 33 0.00072 27.1 2.0 18 140-157 17-34 (98)
17 smart00843 Ftsk_gamma This dom 32.3 1.1E+02 0.0023 22.2 4.4 43 31-73 4-46 (63)
18 PF09413 DUF2007: Domain of un 30.6 43 0.00092 23.3 2.1 23 142-164 9-31 (67)
19 PF09397 Ftsk_gamma: Ftsk gamm 25.4 1.1E+02 0.0024 22.2 3.5 40 33-72 7-46 (65)
20 PF11848 DUF3368: Domain of un 22.9 89 0.0019 20.9 2.5 25 47-71 20-44 (48)
21 COG4009 Uncharacterized protei 22.9 58 0.0012 25.1 1.7 19 46-64 60-78 (88)
22 PF13314 DUF4083: Domain of un 21.5 2E+02 0.0043 20.7 4.1 30 29-58 18-51 (58)
23 TIGR01634 tail_P2_I phage tail 21.3 1.8E+02 0.004 24.1 4.5 37 145-183 78-114 (139)
No 1
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=100.00 E-value=3.1e-57 Score=383.18 Aligned_cols=167 Identities=51% Similarity=0.780 Sum_probs=158.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccc
Q 026545 25 VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVAD 104 (237)
Q Consensus 25 Vs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFgKqaD 104 (237)
||+|+|+|||+|||+|+++++++++|++++|+.+||+||.||+|++..|++..+|+++++++|+|||+++|+.+||||+|
T Consensus 1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~aD 80 (168)
T PTZ00391 1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSSD 80 (168)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchhh
Confidence 79999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecc
Q 026545 105 SLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184 (237)
Q Consensus 105 ~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~ 184 (237)
+| |.+||+|+|||+||+|+|++|+|+|+++++++|++|+||||||||+++||+|+||||+++++..+ .+|+|+|||++
T Consensus 81 ~L-kt~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~-~~t~~likf~~ 158 (168)
T PTZ00391 81 LL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKN-FSTTILIKFYP 158 (168)
T ss_pred hh-cccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCC-CceEEEEEecH
Confidence 99 34468899999999999999999999999999999999999999999999999999999876542 39999999999
Q ss_pred ccccCcccc
Q 026545 185 EQKYPSIFL 193 (237)
Q Consensus 185 ~v~~~e~~~ 193 (237)
+|++||..+
T Consensus 159 ~v~~Re~~~ 167 (168)
T PTZ00391 159 EVIEREKSI 167 (168)
T ss_pred HHHHHHhhc
Confidence 999999765
No 2
>KOG3315 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-56 Score=373.08 Aligned_cols=187 Identities=59% Similarity=0.928 Sum_probs=179.4
Q ss_pred CccCCCCCCCccccccCccCcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCcc
Q 026545 2 IGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81 (237)
Q Consensus 2 ~~~~~~~~~~~i~~~~l~~~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~ 81 (237)
+..+.+...++|||++|+++|.|||+|+|+|||+|||+|+++++.++.|++.+|+.+||+||.||+|++.+|||+++|++
T Consensus 4 ~~~s~~~~~s~il~~~L~~~rtEvslS~fA~Lfsemiqy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREt 83 (191)
T KOG3315|consen 4 IKASTMRIPSNILDKSLSKGRTEVSLSAFAFLFSEMIQYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRET 83 (191)
T ss_pred ccccccccccchhhhhhhccCccccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHH
Confidence 44566777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEE
Q 026545 82 RLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVV 161 (237)
Q Consensus 82 ~~ldilkFIck~~Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~V 161 (237)
+++++|.||+.++|+.+|||.+|+|||.+++.++|+|+|++|++++|||+|+|++.+||++|+||||+|+|.+.||||.|
T Consensus 84 kilgiL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckV 163 (191)
T KOG3315|consen 84 KILGILQFIHSTVWKYLFGKEADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKV 163 (191)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCceEEEEEeccccccCccccc
Q 026545 162 TAHFVPVEGQQRPRTTILIKFAEEQKYPSIFLT 194 (237)
Q Consensus 162 ta~~~~~~~~~~p~t~F~IKf~~~v~~~e~~~~ 194 (237)
|||+.| + +|+++|||+++|++||..+.
T Consensus 164 TAh~~P-~-----gt~~~IkF~~~Viare~~l~ 190 (191)
T KOG3315|consen 164 TAHWHP-E-----GTTYLIKFDESVIAREGLLE 190 (191)
T ss_pred eeeecC-C-----CCeEEEEecHHHHhhhhhhc
Confidence 999985 2 69999999999999997653
No 3
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=100.00 E-value=2.6e-48 Score=322.58 Aligned_cols=150 Identities=46% Similarity=0.787 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 026545 29 AFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEK 108 (237)
Q Consensus 29 ~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFgKqaD~Lek 108 (237)
+|+|||+|||+|++++. +.++++++|++|||+||.||+|+++.+.+..+|+++++|+++||||++|+++||||+|+|
T Consensus 1 ~f~~l~~e~V~~~~~~~-~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l-- 77 (152)
T PF04051_consen 1 AFALLFGEMVQYLLRRE-DVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNL-- 77 (152)
T ss_dssp HHHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEE--
T ss_pred CHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCccc--
Confidence 69999999999999944 999999999999999999999999999667899999999999999999999999999999
Q ss_pred ccCC-CCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecc
Q 026545 109 GTEH-EDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184 (237)
Q Consensus 109 ~tn~-~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~ 184 (237)
++|| +|+|+|+|++|+|++|+++|++++.++|++|+||||||||+++||+|+|||+.++. ..|+|+|+|||++
T Consensus 78 ~~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~---~~~~~~f~Ik~~~ 151 (152)
T PF04051_consen 78 KTNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPL---NGPQTTFQIKFEK 151 (152)
T ss_dssp EEETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCC---GTTEEEEEEEEEH
T ss_pred cccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEecc---CCCCeEEEEEEec
Confidence 7888 99999999999999999999988899999999999999999999999999999843 3379999999975
No 4
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-48 Score=327.56 Aligned_cols=184 Identities=39% Similarity=0.658 Sum_probs=175.0
Q ss_pred CCccccccCccCcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHH
Q 026545 10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSF 89 (237)
Q Consensus 10 ~~~i~~~~l~~~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkF 89 (237)
...||+++|.-.+++|++|+|+|||.||++|+++...+.+|+|.+|.++||+||.||+|++.+|.+..+|+.+++++|+|
T Consensus 25 ~~~vy~qnl~~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rIl~iLq~ 104 (208)
T COG5128 25 GKSVYEQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRILTILQR 104 (208)
T ss_pred chhHHHHhHHHHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhHHHHHHH
Confidence 45799999966669999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHhhcccccccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCC
Q 026545 90 VHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVE 169 (237)
Q Consensus 90 Ick~~Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~ 169 (237)
|+.++|+++||+.+|.|||..+..++|||+||+|++++|||+|+++++++|.+|+||||+|+|.+.||||.||||..|.+
T Consensus 105 ih~~lwsylf~~~~d~leKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh~~P~~ 184 (208)
T COG5128 105 IHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPSE 184 (208)
T ss_pred HHHHHHHHHhccchHHHHHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCceEEEEEeccccccCccccc
Q 026545 170 GQQRPRTTILIKFAEEQKYPSIFLT 194 (237)
Q Consensus 170 ~~~~p~t~F~IKf~~~v~~~e~~~~ 194 (237)
.-++ +|+|+|+|++.|++||..++
T Consensus 185 ~~p~-Rtv~lI~~d~~vi~re~v~g 208 (208)
T COG5128 185 NLPN-RTVFLIRIDDLVIAREEVLG 208 (208)
T ss_pred CCCc-ceEEEEEecHHHHhhhhhcC
Confidence 5444 99999999999999998754
No 5
>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-43 Score=290.25 Aligned_cols=147 Identities=26% Similarity=0.424 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHhhcCC---------hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHh
Q 026545 28 SAFAFLFSELVQYNQTQVDN---------IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVL 98 (237)
Q Consensus 28 s~F~~L~~EiV~y~~~~~~~---------~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~l 98 (237)
-+|++|+.|||.++.+..+| ..+..++||.|||+||++|.|+++ +++.|+.+.||+|||||||+|+.+
T Consensus 5 v~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~Erl~---~e~~rf~deLeimKFiCkDfW~~V 81 (163)
T KOG3316|consen 5 VLFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSERLT---RERNRFKDELEIMKFICKDFWSIV 81 (163)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46999999999998886433 234779999999999999999999 457899999999999999999999
Q ss_pred hcccccccccccCCCCeEEEEcCCcccccceecCCCCCC--cchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 026545 99 FGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGT--FNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT 176 (237)
Q Consensus 99 FgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~--l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t 176 (237)
|+||+||| +|||+|+|||+|+.|+|++.+|-.+++.. ..|++|+||+|||+|.+||++|.|||++. ..|.|
T Consensus 82 F~KQiDNL--rTNhrG~yVlqD~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~-----slPtc 154 (163)
T KOG3316|consen 82 FKKQIDNL--RTNHRGTYVLQDNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVS-----SLPTC 154 (163)
T ss_pred Hhhhhhhc--cccCCceEEEecCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecC-----CCCce
Confidence 99999999 99999999999999999999986655432 36999999999999999999999999997 78999
Q ss_pred EEEEEecc
Q 026545 177 TILIKFAE 184 (237)
Q Consensus 177 ~F~IKf~~ 184 (237)
.|+|++.+
T Consensus 155 kFhV~v~~ 162 (163)
T KOG3316|consen 155 KFHVQVQP 162 (163)
T ss_pred EEEEEecC
Confidence 99999875
No 6
>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.2e-33 Score=230.45 Aligned_cols=165 Identities=15% Similarity=0.301 Sum_probs=148.1
Q ss_pred CccCcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH
Q 026545 18 LSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV 97 (237)
Q Consensus 18 l~~~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~ 97 (237)
+-+.-.++|.++|+++|++||.++++++++.++++++|++|||+||.||+|.+++|. ..+||.|+.++...|||..+|+
T Consensus 9 i~~~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks-~vpRC~dfretaevlak~afkm 87 (183)
T KOG3330|consen 9 IAKKSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKS-NVPRCVDFRETAEVLAKVAFKM 87 (183)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhc-CCchhhhHHHHHHHHHHhhhhe
Confidence 333347899999999999999999999999999999999999999999999999996 7899999999999999999999
Q ss_pred hhcccccccccccCCCCeEEEEcCCcccccceecCC-CCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 026545 98 LFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK-DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT 176 (237)
Q Consensus 98 lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~-e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t 176 (237)
++|.++..- .|+.+.++|.|+-.++|+..||+.|. ..+.|+|+++.||+|||||++++++|+|+ |..|.++++..|
T Consensus 88 yLgitpsit-swss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~--f~~d~lrGd~~t 164 (183)
T KOG3330|consen 88 YLGITPSIT-SWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVV--FLSDTLRGDSVT 164 (183)
T ss_pred eeeccccee-eecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheee--eeeehhcCCCce
Confidence 999998766 38888899998766666799997654 56779999999999999999999999998 788888888889
Q ss_pred EEEEEecccc
Q 026545 177 TILIKFAEEQ 186 (237)
Q Consensus 177 ~F~IKf~~~v 186 (237)
.+.|+|.+.+
T Consensus 165 EIrv~f~r~l 174 (183)
T KOG3330|consen 165 EIRVRFLRIL 174 (183)
T ss_pred eeeeeHHHHH
Confidence 9999998754
No 7
>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]
Probab=95.08 E-value=0.57 Score=39.43 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEcCCcccccce
Q 026545 50 ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFI 129 (237)
Q Consensus 50 ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~I 129 (237)
+....+..+|+.+|..++. .....++..|+.- |...++.-.+.- .+...+..+.|..+. -
T Consensus 46 ~~~~~~y~~G~~~G~~l~~-----------~~~~~~~~~f~~~--~~~~~~~v~~~~---~~~~~~v~v~~c~~c----~ 105 (158)
T COG1719 46 GAEPVLYEAGKEIGKALIK-----------EKLIEELENFLEF--WEEVGGGVLEVE---EEEPLVVEVYDCIEC----A 105 (158)
T ss_pred CcHHHHHHHHHHHHHHhcc-----------hhchHHHHHHHHH--HHhhcceEEEcc---cCCCceEEEEcCchh----h
Confidence 4567788899999999886 1122234444433 887777655443 222355556655543 1
Q ss_pred ecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecc
Q 026545 130 SIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184 (237)
Q Consensus 130 S~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~ 184 (237)
-+|. .+-+-+.|.+|+|.|+|+...=+- +.++=+.....+.+.|.|.|+..+
T Consensus 106 ~~p~--~~ePvC~~~aG~iag~l~~~~~k~-~~v~Et~C~~~G~~~C~F~i~~~~ 157 (158)
T COG1719 106 GLPG--IGEPVCHLEAGFIAGFLEEILGKK-VEVEETECAAEGDDRCVFEIRLKD 157 (158)
T ss_pred cCCC--CCCcchhHHhhHHHHHHHHHhCCC-eEEEEEEEeecCCCceEEEEEecC
Confidence 2344 234678899999999999865332 222233344557789999999754
No 8
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=85.40 E-value=4.7 Score=35.17 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=71.0
Q ss_pred ccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHH-HHHhhhhcCCCCCccchHHH-------HHHHHHHH
Q 026545 23 QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARV-LELLCHRDKGNRRETRLLGI-------LSFVHSTV 94 (237)
Q Consensus 23 ~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RL-iE~l~~r~k~~~R~~~~ldi-------lkFIck~~ 94 (237)
.=|+.+.|.-|+..+=..+ ..+....-|.+.|++-|.++ ..++.- ...+..+.+.. +.-|.|++
T Consensus 42 ~mv~E~~~~aL~~aL~~el-----G~~aa~~vl~~~G~~ta~y~l~~rIp~---~~q~~Lr~lp~~~~~r~l~~aI~k~a 113 (188)
T TIGR02019 42 GMLPESQFSTLHRWLRDTL-----GETAAARLLRESGLATADYILANRIPP---PAQRLIRALPAGLAARVLLTAIAKHA 113 (188)
T ss_pred hcCCHHHHHHHHHHHHHHh-----CHHHHHHHHHHHhHHHHHHHHHHHhhH---HHHHHHHHCChHHHHHHHHHHHHHHH
Confidence 4467777776666553221 22345566777777666666 344331 11233333333 34458899
Q ss_pred HHHhhcccccccccccCCCCeEEEEcCCcccccceec-CC---CCCCcchhhhhHHHHHHHhhhC-CCCeEEEEEEccCC
Q 026545 95 WKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISI-PK---DMGTFNCGAFVAGIVRGVLDSA-GFPAVVTAHFVPVE 169 (237)
Q Consensus 95 Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~-p~---e~~~l~y~af~cGIIrGaL~~l-G~~a~Vta~~~~~~ 169 (237)
|+.- .-|.|......|+..+ |.- |. .-.+..-++|.+|+++|.++.+ +=++.|. =+...
T Consensus 114 Wtf~-------------G~G~fs~~~~~~l~i~-I~ds~~a~~~~~~~P~C~~~aGife~lFs~lv~~~~~v~--Et~C~ 177 (188)
T TIGR02019 114 WTFA-------------GSGKFRYVSGPPLSFE-IARNPVVAGESSDTPVCHWYAAVFERLLRRLVWPHVAVR--ETACC 177 (188)
T ss_pred Hhhc-------------ccceEEEeeCCCeEEE-EecChhhhcCCCCCceeeeeHHHHHHHHHHHhCCCceEE--eehHh
Confidence 9432 2233444444443211 110 10 0113345789999999999874 4555554 33344
Q ss_pred CCCCCceEEEE
Q 026545 170 GQQRPRTTILI 180 (237)
Q Consensus 170 ~~~~p~t~F~I 180 (237)
..+.+.|.|.+
T Consensus 178 a~G~~~C~F~~ 188 (188)
T TIGR02019 178 AKGAPRCRFEL 188 (188)
T ss_pred hcCCCcceeeC
Confidence 45777999974
No 9
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=76.46 E-value=3.7 Score=28.84 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=26.8
Q ss_pred cchhhhhHHHHHHHhhhC-CCCeEEEEEEccCCCCCCCceEEEEE
Q 026545 138 FNCGAFVAGIVRGVLDSA-GFPAVVTAHFVPVEGQQRPRTTILIK 181 (237)
Q Consensus 138 l~y~af~cGIIrGaL~~l-G~~a~Vta~~~~~~~~~~p~t~F~IK 181 (237)
-.-.+|.+|++.|+++.+ |-+..|+ =+.-...+.+.|.|.|+
T Consensus 19 ~p~C~~~~G~~~G~~~~~~~~~~~v~--E~~C~a~G~~~C~F~i~ 61 (62)
T PF02830_consen 19 EPVCWFTAGYLAGFFSALFGKEVEVE--ETKCQAMGDDHCEFVIR 61 (62)
T ss_dssp S---HHHHHHHHHHHHHHHSSEEEEE--EEE-GGGT-SSEEEEEE
T ss_pred CceEHHHHHHHHHHHHHHhCCceEEE--EeEEEcCCCCeeEEEEE
Confidence 345689999999999654 4444443 34455567889999986
No 10
>PF09536 DUF2378: Protein of unknown function (DUF2378); InterPro: IPR011751 This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus (strain DK 1622). Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=70.71 E-value=8.3 Score=33.21 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=29.4
Q ss_pred chhhhhHHHHHHHhhhCCCCe-EEEEEEccCCCCCCCceEEEEE
Q 026545 139 NCGAFVAGIVRGVLDSAGFPA-VVTAHFVPVEGQQRPRTTILIK 181 (237)
Q Consensus 139 ~y~af~cGIIrGaL~~lG~~a-~Vta~~~~~~~~~~p~t~F~IK 181 (237)
..-.|.+|+++|+|...|-+. .|...-. +...|+|.|.
T Consensus 138 ~~p~f~~G~l~~~L~~~Ga~~~~V~~~~~-----~~~~~~y~i~ 176 (178)
T PF09536_consen 138 MPPAFHEGVLEAALEAAGARGPRVRVRER-----GGDDAEYRIR 176 (178)
T ss_pred CChHHHHHHHHHHHHHcCCCCCEEEEEec-----CCCceEEEEE
Confidence 366799999999999999994 7764432 3348999885
No 11
>TIGR02265 Mxa_TIGR02265 Myxococcus xanthus paralogous family TIGR02265. This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus DK 1622. Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=62.61 E-value=14 Score=31.92 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=28.2
Q ss_pred chhhhhHHHHHHHhhhCC-CCeEEEEEEccCCCCCCCceEEEEE
Q 026545 139 NCGAFVAGIVRGVLDSAG-FPAVVTAHFVPVEGQQRPRTTILIK 181 (237)
Q Consensus 139 ~y~af~cGIIrGaL~~lG-~~a~Vta~~~~~~~~~~p~t~F~IK 181 (237)
....|.+|+++|+|+..| -...|...-. +...|+|.|.
T Consensus 139 ~~~~f~~G~l~~aLe~~Ga~~~~V~~~~~-----g~~~~~y~i~ 177 (179)
T TIGR02265 139 MPPAYHEGVLHAALRAVGARDVRVRGRAF-----GGLDATYRLS 177 (179)
T ss_pred CchHHHHHHHHHHHHHcCCCCCEEEEEec-----CCCCceEEEE
Confidence 347899999999999999 4456654433 3348999885
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=43.37 E-value=82 Score=28.33 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=53.7
Q ss_pred cccccHHHHHHHHHHHHHH--HHhhcC-------ChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCc-cchHHHHHHHH
Q 026545 22 KQEVSLSAFAFLFSELVQY--NQTQVD-------NIAELERRLEDAGYAVGARVLELLCHRDKGNRRE-TRLLGILSFVH 91 (237)
Q Consensus 22 ~~eVs~s~F~~L~~EiV~y--~~~~~~-------~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~-~~~ldilkFIc 91 (237)
..+|+-.-|..|+.-|=+| +.++++ +..|+.+.|..|||++--.+.+.+..|- .+. ...+..-+||.
T Consensus 108 ~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~ky---d~~~~g~i~FD~FI~ 184 (221)
T KOG0037|consen 108 SGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKY---DRFGGGRIDFDDFIQ 184 (221)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHh---ccccCCceeHHHHHH
Confidence 3568999999999988776 333332 4579999999999999999999998552 222 44455566666
Q ss_pred HHHHHHhhc
Q 026545 92 STVWKVLFG 100 (237)
Q Consensus 92 k~~Wk~lFg 100 (237)
=-+|-.-+-
T Consensus 185 ccv~L~~lt 193 (221)
T KOG0037|consen 185 CCVVLQRLT 193 (221)
T ss_pred HHHHHHHHH
Confidence 666655433
No 13
>PF06505 XylR_N: Activator of aromatic catabolism; InterPro: IPR010523 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to IPR004096 from INTERPRO.
Probab=43.36 E-value=69 Score=25.25 Aligned_cols=42 Identities=31% Similarity=0.270 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhh
Q 026545 25 VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71 (237)
Q Consensus 25 Vs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~ 71 (237)
+..+++..|.-|+|..+ ..+....-|-++||.-|.|-+|.+.
T Consensus 25 ~~~~alg~LRkELi~~l-----G~~~AR~iltR~Gy~~G~~DAe~~~ 66 (103)
T PF06505_consen 25 MHASALGALRKELIETL-----GEERARGILTRMGYASGWRDAELAR 66 (103)
T ss_pred EchhHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999764 3345678899999999999999986
No 14
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.66 E-value=1.4e+02 Score=26.04 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=36.0
Q ss_pred ccccHHHHHHHHHHHHHHHHhhc-CC-hH------HHHHHHHHhhhhhh---HHHHHHhhhhc
Q 026545 23 QEVSLSAFAFLFSELVQYNQTQV-DN-IA------ELERRLEDAGYAVG---ARVLELLCHRD 74 (237)
Q Consensus 23 ~eVs~s~F~~L~~EiV~y~~~~~-~~-~~------ev~~kLe~mGy~VG---~RLiE~l~~r~ 74 (237)
++-.+.-.-++|..+|.-+.+-. +| .. ..-..||.+||+|+ .||-+++..++
T Consensus 41 REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~ 103 (190)
T PF05266_consen 41 REGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD 103 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 45566667778888877655543 22 22 33488999999999 48888888775
No 15
>PRK14741 spoVM stage V sporulation protein M; Provisional
Probab=35.48 E-value=25 Score=21.13 Aligned_cols=14 Identities=50% Similarity=0.802 Sum_probs=11.9
Q ss_pred hhhHHHHHHHhhhC
Q 026545 142 AFVAGIVRGVLDSA 155 (237)
Q Consensus 142 af~cGIIrGaL~~l 155 (237)
-|+.|+||++|.++
T Consensus 10 kflgg~vra~l~~f 23 (26)
T PRK14741 10 KFLGGIVRAMLGSF 23 (26)
T ss_pred HHHHHHHHHHHHHh
Confidence 47899999999875
No 16
>PF11565 PorB: Alpha helical Porin B; InterPro: IPR021114 This entry represents the putative cell wall channel-forming proteins porin B and porin C from Corynebacterium sp. Porin B from Corynebacterium glutamicum (Brevibacterium flavum) allows the exchange of material across the mycolic acid layer, which is the protective nonpolar barrier. Porin B has an alpha helical core structure consisting of four alpha-helices surrounding a nonpolar interior. There is a disulphide bridge between helices 1 and 4 to form a stable covalently bound ring []. The channel of PorB is oligomeric [].; PDB: 2VQG_G 2VQL_C 2VQK_A 2VQH_A.
Probab=32.83 E-value=33 Score=27.09 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=16.0
Q ss_pred hhhhhHHHHHHHhhhCCC
Q 026545 140 CGAFVAGIVRGVLDSAGF 157 (237)
Q Consensus 140 y~af~cGIIrGaL~~lG~ 157 (237)
+.++-||++|++|...|+
T Consensus 17 i~~~dC~~lr~~L~~~Gl 34 (98)
T PF11565_consen 17 IDNADCGILRTGLKATGL 34 (98)
T ss_dssp GSHHHHHHHHHHHHHTT-
T ss_pred cCcccccHHHhhhhhhcc
Confidence 788999999999999984
No 17
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=32.31 E-value=1.1e+02 Score=22.23 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhh
Q 026545 31 AFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73 (237)
Q Consensus 31 ~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r 73 (237)
+-||-+.+++......-....-++=-++||+=..||+|.+-..
T Consensus 4 D~ly~~a~~~V~~~~~~S~S~lQR~~~IGynrAariid~lE~~ 46 (63)
T smart00843 4 DELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEE 46 (63)
T ss_pred cHHHHHHHHHHHHhCCCChHHHHHHHhcchhHHHHHHHHHHHC
Confidence 3478888888877654333344445579999999999998743
No 18
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=30.62 E-value=43 Score=23.32 Aligned_cols=23 Identities=30% Similarity=0.666 Sum_probs=16.1
Q ss_pred hhhHHHHHHHhhhCCCCeEEEEE
Q 026545 142 AFVAGIVRGVLDSAGFPAVVTAH 164 (237)
Q Consensus 142 af~cGIIrGaL~~lG~~a~Vta~ 164 (237)
.+-|.+|++.|+.-|++|.|.-+
T Consensus 9 ~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 9 PIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp HHHHHHHHHHHHHTT--EE--S-
T ss_pred HHHHHHHHHHHHhCCCcEEEECC
Confidence 56789999999999999998633
No 19
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=25.40 E-value=1.1e+02 Score=22.23 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhh
Q 026545 33 LFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCH 72 (237)
Q Consensus 33 L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~ 72 (237)
||-+.+++......-....-++=-++||+=..||+|.+-.
T Consensus 7 ly~~a~~~V~~~~~~S~S~lQR~~rIGynrAariid~LE~ 46 (65)
T PF09397_consen 7 LYEEAVEFVIEEGKASISLLQRKFRIGYNRAARIIDQLEE 46 (65)
T ss_dssp THHHHHHHHHHCTCECHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6777888877754433344455568999999999999874
No 20
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=22.89 E-value=89 Score=20.91 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHhhhhhhHHHHHHhh
Q 026545 47 NIAELERRLEDAGYAVGARVLELLC 71 (237)
Q Consensus 47 ~~~ev~~kLe~mGy~VG~RLiE~l~ 71 (237)
+..++-++|...||+|+.++++.++
T Consensus 20 ~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred hHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4566778899999999999999887
No 21
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.86 E-value=58 Score=25.06 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHhhhhhhH
Q 026545 46 DNIAELERRLEDAGYAVGA 64 (237)
Q Consensus 46 ~~~~ev~~kLe~mGy~VG~ 64 (237)
++++|+++.|++||..|-+
T Consensus 60 ~s~eev~~ele~mga~in~ 78 (88)
T COG4009 60 ESEEEVERELEDMGAEINR 78 (88)
T ss_pred CCHHHHHHHHHHhCchhcc
Confidence 4678999999999988753
No 22
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=21.54 E-value=2e+02 Score=20.67 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhc----CChHHHHHHHHHh
Q 026545 29 AFAFLFSELVQYNQTQV----DNIAELERRLEDA 58 (237)
Q Consensus 29 ~F~~L~~EiV~y~~~~~----~~~~ev~~kLe~m 58 (237)
+|-+.|+-+++.+...+ .+.+++|++|+++
T Consensus 18 l~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrI 51 (58)
T PF13314_consen 18 LFGASFTLFIRRILINSNAKKQDVDSMEQKLDRI 51 (58)
T ss_pred HHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 34455555666655543 3556899999864
No 23
>TIGR01634 tail_P2_I phage tail protein, P2 protein I family. This model represents the family of phage P2 protein I and related tail proteins from a number of temperate phage of Gram-negative bacteria. This alignment is built as a fragment model and identifies some phage tail proteins with strong but local similarity to members of the seed alignment.
Probab=21.35 E-value=1.8e+02 Score=24.08 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=25.5
Q ss_pred HHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEec
Q 026545 145 AGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFA 183 (237)
Q Consensus 145 cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~ 183 (237)
.+.||-+|..+|...+|+ ++-.....+.|. +|.|.+.
T Consensus 78 ~~avr~~l~~lg~~~~i~-EW~e~~p~g~P~-tF~i~~~ 114 (139)
T TIGR01634 78 IGAVRRVVEPFGGIVNIT-EWWQTGPPGPPG-TFELTLT 114 (139)
T ss_pred HHHHHHHHHHcCCCeEEe-ehhccCCCCCCe-EEEEEEE
Confidence 467788999999999986 554433223443 7887754
Done!