Query 026545
Match_columns 237
No_of_seqs 125 out of 524
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 16:09:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3w_B ZGC 92866, trafficking 100.0 2.2E-61 7.5E-66 414.1 15.2 185 3-194 2-186 (188)
2 3cue_B Transport protein parti 100.0 9.6E-54 3.3E-58 384.6 12.4 178 10-192 42-280 (283)
3 2c0j_B R32611_2; palmitate; HE 100.0 2.7E-52 9.1E-57 349.5 14.4 150 25-184 3-159 (160)
4 1sz7_A BET3 homolog, trafficki 100.0 1.2E-51 4E-56 356.6 16.0 163 21-188 19-182 (200)
5 2bjn_A TPC6, trafficking prote 100.0 4.2E-51 1.4E-55 342.2 14.1 151 24-184 3-159 (160)
6 3cue_D Transport protein parti 100.0 2.7E-50 9.3E-55 346.5 16.3 163 21-188 21-186 (193)
7 2oso_A Hypothetical protein MJ 95.9 0.011 3.8E-07 48.6 5.4 134 22-185 25-160 (163)
8 3tfg_A ALR2278 protein; heme-b 82.2 2.1 7.2E-05 35.4 5.5 45 140-186 141-185 (189)
9 2kii_A Putative uncharacterize 79.2 4.5 0.00015 33.1 6.5 44 139-184 137-180 (181)
10 3sj5_A Methyl-accepting chemot 60.0 7.9 0.00027 31.9 3.9 46 139-185 136-181 (188)
11 2vqg_A Uncharacterized protein 45.3 11 0.00039 28.5 2.2 21 139-159 16-36 (99)
12 3njc_A YSLB protein; NESG, PSI 33.9 60 0.0021 26.5 5.1 104 57-184 50-154 (158)
13 2bnk_A Early protein GP16.7; D 28.4 1.1E+02 0.0038 21.2 4.9 43 50-97 11-55 (67)
14 1gak_A SP18, fertilization pro 25.6 1E+02 0.0036 24.5 4.9 47 22-71 3-49 (141)
15 1jg5_A GTP cyclohydrolase I fe 21.7 40 0.0014 24.7 1.7 16 47-62 51-66 (83)
16 2ve8_A FTSK, DNA translocase F 21.4 1.1E+02 0.0038 21.8 4.0 42 32-73 10-51 (73)
No 1
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=100.00 E-value=2.2e-61 Score=414.05 Aligned_cols=185 Identities=46% Similarity=0.762 Sum_probs=159.9
Q ss_pred ccCCCCCCCccccccCccCcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccc
Q 026545 3 GVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR 82 (237)
Q Consensus 3 ~~~~~~~~~~i~~~~l~~~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~ 82 (237)
+++..+...+||||||+|++.+||+|+|+|||+|||+|++++.++++|++++|++|||+||.||+|++++|++..+||++
T Consensus 2 ~~~~~~~~~~i~~~~l~~~~~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d 81 (188)
T 2j3w_B 2 EVRFTRGKSAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETK 81 (188)
T ss_dssp -------------------CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCS
T ss_pred CcccCCCCCccccCccccchhHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCC
Confidence 56777788899999999999999999999999999999999999999999999999999999999999999876699999
Q ss_pred hHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEE
Q 026545 83 LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVT 162 (237)
Q Consensus 83 ~ldilkFIck~~Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vt 162 (237)
++|+++||||++|+++||||+|+|++.|||+|+|+|+|++|++++|||+|+++++++|++|+||||||||+++||+|+||
T Consensus 82 ~ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vt 161 (188)
T 2j3w_B 82 VLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVT 161 (188)
T ss_dssp HHHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEE
Confidence 99999999999999999999999975599999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCceEEEEEeccccccCccccc
Q 026545 163 AHFVPVEGQQRPRTTILIKFAEEQKYPSIFLT 194 (237)
Q Consensus 163 a~~~~~~~~~~p~t~F~IKf~~~v~~~e~~~~ 194 (237)
||+ .|+|+|+|||+++|++||..++
T Consensus 162 a~~-------~~~t~f~Ikf~~~v~~re~~~~ 186 (188)
T 2j3w_B 162 VHW-------HKGTTLMIKFDESVIARDKALD 186 (188)
T ss_dssp EEE-------SSSEEEEEEECHHHHHHHHHTC
T ss_pred EEe-------CCCEEEEEEecHHHHHHHHhhc
Confidence 999 3699999999999999998875
No 2
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-54 Score=384.64 Aligned_cols=178 Identities=38% Similarity=0.626 Sum_probs=149.5
Q ss_pred CCccccccCccCcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcC--------------
Q 026545 10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDK-------------- 75 (237)
Q Consensus 10 ~~~i~~~~l~~~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k-------------- 75 (237)
+.+||||+|.+.+.+||+|+|+|||+|||+|+++++++++|++++|+.|||+||.||+|++.+|++
T Consensus 42 ~~~i~~~~l~~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~ 121 (283)
T 3cue_B 42 PSRIYSESLLFKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLS 121 (283)
T ss_dssp -------------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred CCcccccccccCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCcccccccccccc
Confidence 579999999999999999999999999999999999999999999999999999999999998864
Q ss_pred -----------------------------------------------CCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 026545 76 -----------------------------------------------GNRRETRLLGILSFVHSTVWKVLFGKVADSLEK 108 (237)
Q Consensus 76 -----------------------------------------------~~~R~~~~ldilkFIck~~Wk~lFgKqaD~Lek 108 (237)
+++||++++|+++||||++|+++||||+|+||+
T Consensus 122 s~~ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lek 201 (283)
T 3cue_B 122 QNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVK 201 (283)
T ss_dssp -------------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhcc
Confidence 258999999999999999999999999999985
Q ss_pred ccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecccccc
Q 026545 109 GTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQKY 188 (237)
Q Consensus 109 ~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~~v~~ 188 (237)
++++.|+|||+|+++++++|++++ +++|++|+||||||||+++||+|+||||+.+... ..++|+|+|||+++|++
T Consensus 202 tn~~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~-~~~~T~~~IkF~~~v~~ 276 (283)
T 3cue_B 202 SSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGG-HSQRTVYLIQFDRQVLD 276 (283)
T ss_dssp CSSCSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSS-CTTCEEEECCCCHHHHH
T ss_pred ccCCCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEccccc-CCCceEEEEEecHHHHh
Confidence 556779999999999999999973 6899999999999999999999999999876442 33699999999999999
Q ss_pred Cccc
Q 026545 189 PSIF 192 (237)
Q Consensus 189 ~e~~ 192 (237)
||..
T Consensus 277 Re~~ 280 (283)
T 3cue_B 277 REGL 280 (283)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9875
No 3
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=100.00 E-value=2.7e-52 Score=349.52 Aligned_cols=150 Identities=25% Similarity=0.329 Sum_probs=133.9
Q ss_pred ccHHHHHHHHHHHHHHHHhhcCC-----hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 026545 25 VSLSAFAFLFSELVQYNQTQVDN-----IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF 99 (237)
Q Consensus 25 Vs~s~F~~L~~EiV~y~~~~~~~-----~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lF 99 (237)
||+++|+|||+|||+|++++.++ .++++++||+|||+||.||+|+++ | +.+||++++|+++||||++|+++|
T Consensus 3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r--~~~r~~d~ld~l~fI~k~~Wk~~f 79 (160)
T 2c0j_B 3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R--ETLAFREELDVLKFLCKDLWVAVF 79 (160)
T ss_dssp CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G--GGGTTCCHHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h--ccCccCCHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999774 467799999999999999999999 5 579999999999999999999999
Q ss_pred cccccccccccCCCCeEEEEcCCcccccceecCCCCC--CcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 026545 100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT 177 (237)
Q Consensus 100 gKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~--~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~ 177 (237)
|||+|+| +|||+|+|+|+|++|+|++|||+|+++. .++|++|+||||||||+++||+|+||||++ +.|+|+
T Consensus 80 gk~~d~L--~t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~-----~~p~~~ 152 (160)
T 2c0j_B 80 QKQMDSL--RTNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVA-----ALPVCK 152 (160)
T ss_dssp SSCCSEE--EECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEES-----STTCEE
T ss_pred CCcCccc--eeCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeec-----CCCceE
Confidence 9999999 5999999999999999999999999988 789999999999999999999999999996 678999
Q ss_pred EEEEecc
Q 026545 178 ILIKFAE 184 (237)
Q Consensus 178 F~IKf~~ 184 (237)
|+|||.+
T Consensus 153 f~i~~~~ 159 (160)
T 2c0j_B 153 FQVVIPK 159 (160)
T ss_dssp EEEECCC
T ss_pred EEEEeec
Confidence 9999976
No 4
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=100.00 E-value=1.2e-51 Score=356.62 Aligned_cols=163 Identities=20% Similarity=0.366 Sum_probs=151.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhc
Q 026545 21 GKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFG 100 (237)
Q Consensus 21 ~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFg 100 (237)
...+||+|+|+|||+|||+|++++++++++++++|++|||+||.||+|++++|+ ..+||++++++++||||++|+++||
T Consensus 19 ~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~d~le~l~fI~k~~Wk~lFg 97 (200)
T 1sz7_A 19 ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARS-NVGRCHDFRETADVIAKVAFKMYLG 97 (200)
T ss_dssp ---CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCSCCCHHHHHHHHHHTHHHHHHS
T ss_pred ccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHhC
Confidence 358999999999999999999999999999999999999999999999999997 5799999999999999999999999
Q ss_pred ccccccccccCCCCeEEE-EcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEE
Q 026545 101 KVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTIL 179 (237)
Q Consensus 101 KqaD~Lek~tn~~g~Y~L-~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~ 179 (237)
||+|+|+ +||++|+|+| +|++|+.. |+++|++++.++|++|+||||||||+++||+ ||||++++++++.++|+|+
T Consensus 98 k~ad~L~-~t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~--Vta~~~~d~l~g~~~t~~~ 173 (200)
T 1sz7_A 98 ITPSITN-WSPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIR 173 (200)
T ss_dssp CCCEEEC-CCTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE--EEEEEEECGGGTCSSEEEE
T ss_pred CCCccce-ecCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCE--EEEEEEecccCCCCCEEEE
Confidence 9999996 6999999999 89998755 9999999999999999999999999999999 8899999988888899999
Q ss_pred EEecccccc
Q 026545 180 IKFAEEQKY 188 (237)
Q Consensus 180 IKf~~~v~~ 188 (237)
|||.+.|.+
T Consensus 174 Ikf~~~v~~ 182 (200)
T 1sz7_A 174 MRFIRRIED 182 (200)
T ss_dssp EEEEEEC--
T ss_pred EEEhhhhhh
Confidence 999998755
No 5
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=100.00 E-value=4.2e-51 Score=342.15 Aligned_cols=151 Identities=23% Similarity=0.389 Sum_probs=128.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhcCChH----HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 026545 24 EVSLSAFAFLFSELVQYNQTQVDNIA----ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF 99 (237)
Q Consensus 24 eVs~s~F~~L~~EiV~y~~~~~~~~~----ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lF 99 (237)
-||.++|+|||+|||+|++++.++.+ +++++|++|||+||.||+|+++ | +.+||++++|+++||||++|+++|
T Consensus 3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r--~~~r~~~~ld~lkfI~k~~Wk~~f 79 (160)
T 2bjn_A 3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-K--DTARFKDELDIMKFICKDFWTTVF 79 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-h--ccCccCCHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999987654 6899999999999999999999 5 479999999999999999999999
Q ss_pred cccccccccccCCCCeEEEEcCCcccccceecCCCCC--CcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 026545 100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT 177 (237)
Q Consensus 100 gKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~--~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~ 177 (237)
|||+|+| +|||+|+|+|+|++|+|++|||+|+++. .++|++|+||||||||+++||+|+||||+. +.|.|+
T Consensus 80 gk~~d~L--~t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~-----~~p~~~ 152 (160)
T 2bjn_A 80 KKQIDNL--RTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVS-----SMPACK 152 (160)
T ss_dssp SSCCSEE--EEEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEES-----STTCEE
T ss_pred CCCCccc--ccCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEec-----CCCceE
Confidence 9999999 6999999999999999999999999884 789999999999999999999999999996 788999
Q ss_pred EEEEecc
Q 026545 178 ILIKFAE 184 (237)
Q Consensus 178 F~IKf~~ 184 (237)
|+|++.+
T Consensus 153 F~i~~~~ 159 (160)
T 2bjn_A 153 FQVMIQK 159 (160)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 9999976
No 6
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-50 Score=346.52 Aligned_cols=163 Identities=17% Similarity=0.325 Sum_probs=150.6
Q ss_pred CcccccHHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 026545 21 GKQEVSLSAFAFLFSELVQ-YNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF 99 (237)
Q Consensus 21 ~~~eVs~s~F~~L~~EiV~-y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lF 99 (237)
...+||+|+|+|||+|||+ |+++..++.++++++|++|||+||.||+|++++|+ +.+||++++++++||||++|+++|
T Consensus 21 ~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~~~le~l~fI~k~~Wk~lf 99 (193)
T 3cue_D 21 KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLART-ALPRCENLVKTSEVLSKCAFKIFL 99 (193)
T ss_dssp SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCSSHHHHHHHHHHHHHHHHS
T ss_pred chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999 56666666999999999999999999999999997 589999999999999999999999
Q ss_pred cccccccccccCCCCeEEE-EcCCcccccceecCCCC-CCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 026545 100 GKVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDM-GTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT 177 (237)
Q Consensus 100 gKqaD~Lek~tn~~g~Y~L-~D~~~~~~~~IS~p~e~-~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~ 177 (237)
|||+|+|+ +|||+|+|+| +|++|+.. |+++|+++ ..++|++|+||||||||+++|| .||||+++++++++++|+
T Consensus 100 gk~~d~L~-~t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~--~Vta~~~~d~l~g~~~t~ 175 (193)
T 3cue_D 100 NITPNITN-WSHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL--DCDVWFVSDILRGDSQTE 175 (193)
T ss_dssp SCCCCCBC-CCTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC--CCEEEECCCSSSSSSCBC
T ss_pred CCCCccce-ecCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC--EEEEEEeeccCCCCCCEE
Confidence 99999996 6999999999 89998755 99999998 7899999999999999999999 678889999988888999
Q ss_pred EEEEecccccc
Q 026545 178 ILIKFAEEQKY 188 (237)
Q Consensus 178 F~IKf~~~v~~ 188 (237)
|+|||+++|.+
T Consensus 176 ~~Ikf~~~v~d 186 (193)
T 3cue_D 176 IKVKLNRILKD 186 (193)
T ss_dssp EEEECCCCCSC
T ss_pred EEEEEhhhhhc
Confidence 99999998754
No 7
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*
Probab=95.85 E-value=0.011 Score=48.58 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=78.5
Q ss_pred cccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH-hhc
Q 026545 22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV-LFG 100 (237)
Q Consensus 22 ~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~-lFg 100 (237)
...|..+.|.+|+..+-..+.....+.. |.+.||..|..+.+.+. +.+ +++|+. =+|
T Consensus 25 ~~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~~-------------~~l----~~~~~~~G~G 82 (163)
T 2oso_A 25 SKKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKNI-------------EEL----KKIFKLMNFG 82 (163)
T ss_dssp SCCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSSH-------------HHH----HHHHHHHTCC
T ss_pred cCcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHHH-------------HHH----HHHHHHcCce
Confidence 3789999999999877665543222211 99999999998865422 222 466665 223
Q ss_pred c-cccccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEE
Q 026545 101 K-VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTIL 179 (237)
Q Consensus 101 K-qaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~ 179 (237)
. .++..+ ....++.+.|.-.+...-.- ..+-..++|.+|++.|+++.+ +.-.|.+.=+.....+.+.|.|.
T Consensus 83 ~l~i~~~~-~~~~~~~~~i~v~~s~e~~~------~~~~pvC~~~~G~~aG~~s~~-~g~~~~~~E~~C~a~G~~~C~F~ 154 (163)
T 2oso_A 83 DLEIDENK-ILLKNPPYKIKLSNPPYQWV------SKEEPIHDFIAGILAGCLEEI-FYYYFVVNEVECVSQGKDKCVFE 154 (163)
T ss_dssp EEECCHHH-HHHSCSCEEEEEESCSCTTC------CCSSCCCHHHHHHHHHHHHHH-HCSEEEEEEEECGGGTCSSEEEE
T ss_pred EEEEEecc-ccccCCcEEEEEEeCceeec------CCCCceeHHHHHHHHHHHHHH-hCCCeEEEEeEeEcCCCCeEEEE
Confidence 2 111110 00133455554322221211 223467889999999999886 33444444555666688899999
Q ss_pred EEeccc
Q 026545 180 IKFAEE 185 (237)
Q Consensus 180 IKf~~~ 185 (237)
++..++
T Consensus 155 ~~~~~~ 160 (163)
T 2oso_A 155 VKEVDE 160 (163)
T ss_dssp EEEEC-
T ss_pred EEEHHH
Confidence 997664
No 8
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=82.22 E-value=2.1 Score=35.41 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecccc
Q 026545 140 CGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQ 186 (237)
Q Consensus 140 y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~~v 186 (237)
.+.|..|+|+|+-+..|-+.+|+ ..+....+...|+|.|++.+..
T Consensus 141 l~~~~~Gli~~~A~~f~~~v~i~--~~~~~~~~~~h~~f~i~~~~~~ 185 (189)
T 3tfg_A 141 LAPMVLGLLHGLGKRFQTKVEVT--QTAFRETGEDHDIFSIKYEDSN 185 (189)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEE--EEECTTTTSSSEEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHhCCCeEEE--EEeccCCCCCeEEEEEEECCCC
Confidence 67899999999999865555554 5554444556899999998763
No 9
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=79.18 E-value=4.5 Score=33.14 Aligned_cols=44 Identities=7% Similarity=0.067 Sum_probs=33.5
Q ss_pred chhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecc
Q 026545 139 NCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184 (237)
Q Consensus 139 ~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~ 184 (237)
....|..|+|+|+-+.+|-+.+|+-... ..++...+.|.|+++.
T Consensus 137 ~l~~~~~Gli~~~A~~f~~~v~i~~~~~--~~~~~~h~~f~i~~~~ 180 (181)
T 2kii_A 137 RLCFCAEGLLFGAAQHFQQKIQISHDTC--MHTGADHCMLIIELQN 180 (181)
T ss_dssp CCHHHHHHHHHHHHHHTTCCEEEEEEEC--GGGTCSSEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHhCCCeEEEEEee--ccCCCCEEEEEEEecC
Confidence 3678999999999999998888873222 2224569999999864
No 10
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=60.02 E-value=7.9 Score=31.94 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=34.0
Q ss_pred chhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEeccc
Q 026545 139 NCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185 (237)
Q Consensus 139 ~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~~ 185 (237)
.++.|+.|+|+||-+-.|-+.+|+-.-..+.+ ..-..+|.|+|+..
T Consensus 136 gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~-~~~~~~~rl~f~~~ 181 (188)
T 3sj5_A 136 KMYDYFLGLIEGSSKFFKEEISVEEVERGEKD-GFSRLKVRIKFKNP 181 (188)
T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEET-TEEEEEEEEEESSC
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecccCCC-CceEEEEEEEeeCh
Confidence 46789999999999999999998733322222 12277999999876
No 11
>2vqg_A Uncharacterized protein CGL0972; transmembrane, membrane protein, porin, membrane, transport, transport; HET: GVT; 1.82A {Corynebacterium glutamicum} PDB: 2vqh_A 2vqk_A 2vql_A
Probab=45.32 E-value=11 Score=28.54 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=17.9
Q ss_pred chhhhhHHHHHHHhhhCCCCe
Q 026545 139 NCGAFVAGIVRGVLDSAGFPA 159 (237)
Q Consensus 139 ~y~af~cGIIrGaL~~lG~~a 159 (237)
++-++-||++||+|...|+.-
T Consensus 16 ~~dwv~Cgiv~t~L~~~gl~~ 36 (99)
T 2vqg_A 16 QYNWVACGILEGGLKAAGVLE 36 (99)
T ss_dssp GGSHHHHHHHHHHHHHTTCCC
T ss_pred ccCcccccHHHHHHHHhhcCC
Confidence 477888999999999998753
No 12
>3njc_A YSLB protein; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium, unknown function; 1.69A {Bacillus subtilis subsp}
Probab=33.87 E-value=60 Score=26.53 Aligned_cols=104 Identities=12% Similarity=0.174 Sum_probs=62.3
Q ss_pred HhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEcCCcccccceecCCCCC
Q 026545 57 DAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG 136 (237)
Q Consensus 57 ~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~ 136 (237)
.+=|..|.+|+..+. ..++-|++.|-.+-.|-.| ..+ +....+-.|-| +.+++..++..-
T Consensus 50 ~ILYWAGK~LARk~p--------l~s~edli~FF~~agwG~L-----~i~-kek~~~~~~eL--sG~~v~~Rl~~~---- 109 (158)
T 3njc_A 50 SMMYWAGKHLARKFP--------LESWEEFPAFFEEAGWGTL-----TNV-SAKKQELEFEL--EGPIISNRLKHQ---- 109 (158)
T ss_dssp HHHHHHHHHHHHHSC--------CSSGGGHHHHHHHTTSCEE-----EEE-EEETTEEEEEE--ECHHHHHHHHHS----
T ss_pred ceeeeccHHHHHhCC--------CCCHHHHHHHHHHhCCcEE-----EEe-ecccceEEEEe--cCchHHhHhhcC----
Confidence 356888888887753 4556688888877777554 222 12222233544 333333333221
Q ss_pred CcchhhhhHHHHHHHhhh-CCCCeEEEEEEccCCCCCCCceEEEEEecc
Q 026545 137 TFNCGAFVAGIVRGVLDS-AGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184 (237)
Q Consensus 137 ~l~y~af~cGIIrGaL~~-lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~ 184 (237)
.-.+..+=||+|.+.++. .|..|+...+..+ ....++|.|+++.
T Consensus 110 ~~~~F~LEAGFIAe~iq~q~~~~aEa~~~~~~----k~~~V~i~V~~D~ 154 (158)
T 3njc_A 110 KEPCFQLEAGFIAEQIQLMNDQIAESYEQVKK----RADKVVLTVKWDM 154 (158)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTEEEEEEEEEE----CSSCEEEEEEEEE
T ss_pred CCCcEEEehHHHHHHHHHHhCcceEEEEeecc----cCCeEEEEEEecC
Confidence 124556778888888875 5677776655433 2348999999874
No 13
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=28.44 E-value=1.1e+02 Score=21.18 Aligned_cols=43 Identities=21% Similarity=0.409 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHH--HHHHHHH
Q 026545 50 ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFV--HSTVWKV 97 (237)
Q Consensus 50 ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFI--ck~~Wk~ 97 (237)
++-..-|+-|-+|-.-++|.+. ..+.....++|.|| ++.+||-
T Consensus 11 ~vLDlYe~SnIrIP~DIIEdl~-----~~~L~te~EVmnYiEnqR~~WKL 55 (67)
T 2bnk_A 11 AVLDLYEQSNIRIPSDIIEDLV-----NQRLQSEQEVLNYIETQRTYWKL 55 (67)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHH-----TTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCcHHHHHHHH-----HHhhhhHHHHHHHHHhhHhHHhh
Confidence 3445667789999999999998 45777788899998 4678984
No 14
>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A {Haliotis fulgens} SCOP: a.19.1.1
Probab=25.60 E-value=1e+02 Score=24.46 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=34.8
Q ss_pred cccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhh
Q 026545 22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71 (237)
Q Consensus 22 ~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~ 71 (237)
+..||.+--+..-..||.|+-.+. ..+.++.+.|||++|.-..-.+.
T Consensus 3 k~~Vsken~aamki~m~~fLD~~~---~kfkkr~~~m~~~l~p~~~~~l~ 49 (141)
T 1gak_A 3 DVVVSRQEQSYVQRGMVNFLDEEM---HKLVKRFRDMRWNLGPGFVFLLK 49 (141)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cceeehhhHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCCCchHHHHHH
Confidence 345777777788888888876643 35789999999999776655444
No 15
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=21.70 E-value=40 Score=24.74 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHhhhhh
Q 026545 47 NIAELERRLEDAGYAV 62 (237)
Q Consensus 47 ~~~ev~~kLe~mGy~V 62 (237)
...-+-++||.+||+|
T Consensus 51 pPr~VLnKLE~~G~rV 66 (83)
T 1jg5_A 51 PPRIVLDKLECRGFRV 66 (83)
T ss_dssp CHHHHHHHHHHTTCEE
T ss_pred ChHHHHHHHhccCeEE
Confidence 3457889999999986
No 16
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=21.41 E-value=1.1e+02 Score=21.79 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhh
Q 026545 32 FLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73 (237)
Q Consensus 32 ~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r 73 (237)
-||-+.|++...........-++=-++||+=..||+|.+-..
T Consensus 10 ~Ly~~A~~~V~~~~~aS~S~lQR~lrIGYnRAArlid~lE~~ 51 (73)
T 2ve8_A 10 PLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMA 51 (73)
T ss_dssp TTHHHHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHccChHHHHHHHHHHHHC
Confidence 477788888777654334455555689999999999998743
Done!