Query 026546
Match_columns 237
No_of_seqs 184 out of 944
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 09:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02821 1-hydroxy-2-methyl-2- 100.0 6.2E-86 1.3E-90 626.4 24.4 237 1-237 81-318 (460)
2 PRK13371 4-hydroxy-3-methylbut 100.0 4.3E-77 9.2E-82 558.5 23.6 229 2-236 15-243 (387)
3 COG0761 lytB 4-Hydroxy-3-methy 100.0 1E-64 2.2E-69 457.8 19.8 175 24-237 1-177 (294)
4 PRK12360 4-hydroxy-3-methylbut 100.0 1.2E-62 2.7E-67 446.0 20.2 174 25-236 1-175 (281)
5 PRK01045 ispH 4-hydroxy-3-meth 100.0 2E-61 4.3E-66 441.2 20.5 173 25-236 1-174 (298)
6 TIGR00216 ispH_lytB (E)-4-hydr 100.0 3.6E-61 7.8E-66 436.3 19.8 170 26-236 1-172 (280)
7 PF02401 LYTB: LytB protein; 100.0 4.9E-61 1.1E-65 435.7 13.8 171 27-236 1-173 (281)
8 PRK00087 4-hydroxy-3-methylbut 100.0 6.7E-57 1.5E-61 446.0 20.2 171 25-236 1-172 (647)
9 PF02401 LYTB: LytB protein; 93.1 1.2 2.5E-05 41.3 10.8 137 36-178 94-248 (281)
10 COG1587 HemD Uroporphyrinogen- 88.0 7.3 0.00016 34.4 10.7 140 5-150 12-181 (248)
11 PF02602 HEM4: Uroporphyrinoge 87.7 7.3 0.00016 33.2 10.2 139 7-150 1-174 (231)
12 PF02571 CbiJ: Precorrin-6x re 87.3 3 6.6E-05 37.6 7.9 109 67-181 12-125 (249)
13 PRK01045 ispH 4-hydroxy-3-meth 86.3 3.1 6.8E-05 38.8 7.6 138 36-179 96-250 (298)
14 PRK08057 cobalt-precorrin-6x r 85.1 4.7 0.0001 36.4 8.0 117 58-181 5-124 (248)
15 PF06414 Zeta_toxin: Zeta toxi 82.6 2.6 5.5E-05 35.8 5.0 49 109-157 83-132 (199)
16 PF14542 Acetyltransf_CG: GCN5 81.1 2.1 4.5E-05 31.8 3.4 33 102-135 34-70 (78)
17 PF03446 NAD_binding_2: NAD bi 80.0 9.1 0.0002 31.5 7.3 96 42-148 13-116 (163)
18 TIGR00109 hemH ferrochelatase. 79.8 17 0.00036 33.9 9.7 32 99-141 190-221 (322)
19 COG2861 Uncharacterized protei 79.1 4.3 9.4E-05 37.1 5.4 101 43-163 109-224 (250)
20 PRK11070 ssDNA exonuclease Rec 78.9 13 0.00028 37.7 9.2 137 6-157 20-164 (575)
21 PRK05752 uroporphyrinogen-III 78.4 27 0.00058 30.8 10.2 142 4-151 13-189 (255)
22 TIGR02764 spore_ybaN_pdaB poly 76.4 44 0.00096 27.9 11.1 46 39-84 79-126 (191)
23 COG1023 Gnd Predicted 6-phosph 75.3 37 0.0008 31.6 10.3 125 41-177 11-141 (300)
24 PRK09189 uroporphyrinogen-III 75.0 17 0.00037 31.6 7.9 142 4-151 10-177 (240)
25 TIGR00423 radical SAM domain p 74.6 23 0.00051 32.3 9.0 74 7-83 39-122 (309)
26 COG2099 CobK Precorrin-6x redu 74.3 19 0.0004 33.2 8.1 117 57-181 4-124 (257)
27 TIGR00216 ispH_lytB (E)-4-hydr 72.3 14 0.0003 34.2 7.0 69 110-178 171-247 (280)
28 PRK12435 ferrochelatase; Provi 72.2 31 0.00067 32.1 9.3 81 42-142 124-208 (311)
29 PRK09453 phosphodiesterase; Pr 72.0 30 0.00065 28.8 8.4 45 41-85 14-72 (182)
30 PF02896 PEP-utilizers_C: PEP- 71.5 7.6 0.00016 36.1 5.1 49 34-83 228-276 (293)
31 TIGR00715 precor6x_red precorr 71.0 19 0.00041 32.7 7.4 106 67-180 12-121 (256)
32 PRK05928 hemD uroporphyrinogen 69.4 69 0.0015 27.1 10.3 115 4-123 11-152 (249)
33 KOG2882 p-Nitrophenyl phosphat 68.6 17 0.00038 34.2 6.7 94 54-157 105-229 (306)
34 PRK00035 hemH ferrochelatase; 67.5 60 0.0013 29.9 10.2 66 41-112 138-204 (333)
35 COG4821 Uncharacterized protei 67.5 96 0.0021 28.2 10.8 37 92-128 100-140 (243)
36 TIGR02884 spore_pdaA delta-lac 66.1 49 0.0011 28.9 8.9 74 8-83 80-157 (224)
37 PRK12360 4-hydroxy-3-methylbut 64.9 25 0.00055 32.6 7.0 137 36-178 99-248 (281)
38 PF02254 TrkA_N: TrkA-N domain 64.8 15 0.00034 27.7 4.8 70 100-177 2-74 (116)
39 TIGR03127 RuMP_HxlB 6-phospho 63.9 67 0.0015 26.5 8.9 30 94-123 70-103 (179)
40 COG0276 HemH Protoheme ferro-l 63.2 19 0.00041 34.1 6.0 95 7-114 105-201 (320)
41 cd00861 ProRS_anticodon_short 62.2 12 0.00025 27.4 3.6 52 99-153 4-64 (94)
42 COG0104 PurA Adenylosuccinate 61.4 12 0.00026 36.7 4.4 82 64-151 72-223 (430)
43 TIGR03190 benz_CoA_bzdN benzoy 61.2 54 0.0012 31.1 8.8 112 34-159 201-330 (377)
44 PF00389 2-Hacid_dh: D-isomer 61.1 18 0.0004 28.5 4.8 85 58-149 1-88 (133)
45 PLN02449 ferrochelatase 59.7 72 0.0016 31.9 9.5 18 96-113 275-292 (485)
46 PF01726 LexA_DNA_bind: LexA D 59.0 11 0.00024 27.2 2.9 38 102-146 19-56 (65)
47 PF00762 Ferrochelatase: Ferro 58.8 36 0.00078 31.7 7.0 111 7-142 103-218 (316)
48 PF13580 SIS_2: SIS domain; PD 57.5 15 0.00032 29.6 3.8 30 94-123 101-134 (138)
49 PF15498 Dendrin: Nephrin and 57.4 2.2 4.7E-05 42.3 -1.3 31 99-129 378-408 (657)
50 TIGR00274 N-acetylmuramic acid 57.4 25 0.00053 32.5 5.6 37 94-130 124-164 (291)
51 PRK10838 spr outer membrane li 57.1 29 0.00062 30.4 5.7 72 5-104 66-139 (190)
52 PF13986 DUF4224: Domain of un 56.9 10 0.00023 25.8 2.3 26 70-105 20-45 (47)
53 cd00419 Ferrochelatase_C Ferro 56.7 17 0.00036 29.7 3.9 35 96-141 17-51 (135)
54 PF12850 Metallophos_2: Calcin 56.6 54 0.0012 25.5 6.8 98 43-160 16-125 (156)
55 PF01904 DUF72: Protein of unk 54.1 46 0.00099 29.3 6.6 103 41-151 102-211 (230)
56 PRK10444 UMP phosphatase; Prov 54.1 1E+02 0.0022 27.5 8.8 106 51-174 78-200 (248)
57 COG0041 PurE Phosphoribosylcar 52.9 46 0.001 28.7 6.0 32 100-153 35-66 (162)
58 cd05005 SIS_PHI Hexulose-6-pho 52.7 1.3E+02 0.0029 24.8 8.9 34 94-127 73-110 (179)
59 PF00455 DeoRC: DeoR C termina 52.6 16 0.00034 30.5 3.2 64 94-164 17-82 (161)
60 PF13380 CoA_binding_2: CoA bi 52.5 33 0.00073 27.0 4.9 56 58-131 59-114 (116)
61 PRK10877 protein disulfide iso 52.0 19 0.00041 31.9 3.8 32 122-153 114-145 (232)
62 PF04273 DUF442: Putative phos 51.9 95 0.0021 24.6 7.4 83 57-152 8-94 (110)
63 cd01080 NAD_bind_m-THF_DH_Cycl 51.2 28 0.0006 29.6 4.5 85 43-130 32-120 (168)
64 PF10096 DUF2334: Uncharacteri 50.6 32 0.00069 30.7 5.0 63 101-164 3-87 (243)
65 COG1494 GlpX Fructose-1,6-bisp 50.5 10 0.00023 35.7 2.0 42 67-112 248-289 (332)
66 cd05006 SIS_GmhA Phosphoheptos 50.5 1.3E+02 0.0029 24.8 8.5 22 94-115 99-121 (177)
67 cd02518 GT2_SpsF SpsF is a gly 48.3 53 0.0012 28.1 6.0 44 117-160 88-134 (233)
68 TIGR03590 PseG pseudaminic aci 48.3 1.9E+02 0.0041 25.9 9.7 85 39-126 17-112 (279)
69 cd04951 GT1_WbdM_like This fam 47.9 1.9E+02 0.0041 25.1 9.5 95 25-123 189-290 (360)
70 TIGR03151 enACPred_II putative 47.8 43 0.00094 31.0 5.6 49 97-150 87-135 (307)
71 PTZ00215 ribose 5-phosphate is 47.8 97 0.0021 26.2 7.2 109 109-221 18-142 (151)
72 PRK13371 4-hydroxy-3-methylbut 47.0 87 0.0019 30.5 7.6 61 119-179 263-328 (387)
73 COG1038 PycA Pyruvate carboxyl 46.9 79 0.0017 34.1 7.7 98 61-180 88-186 (1149)
74 cd03108 AdSS Adenylosuccinate 46.9 33 0.00071 33.1 4.7 40 106-151 130-169 (363)
75 KOG0238 3-Methylcrotonyl-CoA c 46.9 53 0.0011 33.6 6.3 169 7-203 11-198 (670)
76 PF01522 Polysacc_deac_1: Poly 46.6 61 0.0013 24.4 5.5 50 108-158 20-70 (123)
77 TIGR02764 spore_ybaN_pdaB poly 45.8 1.8E+02 0.0038 24.2 11.6 94 57-150 36-158 (191)
78 TIGR02884 spore_pdaA delta-lac 45.7 68 0.0015 28.0 6.3 71 5-83 140-219 (224)
79 PRK00087 4-hydroxy-3-methylbut 45.3 74 0.0016 32.5 7.3 138 36-179 96-246 (647)
80 PF01380 SIS: SIS domain SIS d 45.3 35 0.00077 26.0 4.0 44 94-137 51-98 (131)
81 PLN02424 ketopantoate hydroxym 44.6 97 0.0021 29.6 7.4 59 26-84 97-157 (332)
82 cd01979 Pchlide_reductase_N Pc 44.5 2.8E+02 0.0061 26.2 12.5 105 24-129 118-233 (396)
83 PF10087 DUF2325: Uncharacteri 43.9 1.1E+02 0.0024 23.0 6.5 72 68-139 13-95 (97)
84 COG3980 spsG Spore coat polysa 43.8 1.5E+02 0.0032 28.2 8.4 99 25-129 1-105 (318)
85 TIGR01417 PTS_I_fam phosphoeno 43.1 47 0.001 33.5 5.5 50 33-83 474-523 (565)
86 PRK05301 pyrroloquinoline quin 42.8 2.8E+02 0.0061 25.8 11.6 22 58-80 95-116 (378)
87 cd06836 PLPDE_III_ODC_DapDC_li 42.6 83 0.0018 29.6 6.8 72 66-139 38-113 (379)
88 TIGR02726 phenyl_P_delta pheny 42.2 1.8E+02 0.0039 24.6 8.1 84 102-187 55-140 (169)
89 TIGR01290 nifB nitrogenase cof 40.8 1.9E+02 0.0042 28.2 9.1 107 40-146 63-189 (442)
90 TIGR00184 purA adenylosuccinat 40.8 36 0.00078 33.5 4.0 33 106-138 128-162 (425)
91 cd07053 BMC_PduT_repeat1 1,2-p 40.6 39 0.00084 25.2 3.4 26 39-69 50-75 (76)
92 TIGR02873 spore_ylxY probable 40.2 1.2E+02 0.0027 27.5 7.2 21 64-84 185-205 (268)
93 TIGR00290 MJ0570_dom MJ0570-re 40.1 83 0.0018 28.1 6.0 53 102-154 40-95 (223)
94 PRK09484 3-deoxy-D-manno-octul 39.7 1.3E+02 0.0027 25.3 6.8 93 107-203 74-168 (183)
95 PLN02621 nicotinamidase 39.6 1.9E+02 0.0041 24.5 8.0 39 109-152 116-160 (197)
96 PF05706 CDKN3: Cyclin-depende 39.6 32 0.00068 29.8 3.1 42 110-151 91-140 (168)
97 PRK13914 invasion associated s 39.5 67 0.0015 32.1 5.8 70 6-104 366-437 (481)
98 PF00919 UPF0004: Uncharacteri 39.3 1.8E+02 0.0039 22.5 7.5 57 68-151 17-76 (98)
99 cd00738 HGTP_anticodon HGTP an 39.2 63 0.0014 23.1 4.4 42 110-154 22-65 (94)
100 PRK03803 murD UDP-N-acetylmura 39.1 3.5E+02 0.0075 25.7 11.1 107 44-157 20-147 (448)
101 PRK02287 hypothetical protein; 39.1 76 0.0016 27.5 5.4 58 72-142 20-80 (171)
102 PRK04293 adenylosuccinate synt 39.0 46 0.00099 31.8 4.3 83 60-151 71-174 (333)
103 TIGR00408 proS_fam_I prolyl-tR 38.8 78 0.0017 31.1 6.1 56 96-154 282-349 (472)
104 TIGR01452 PGP_euk phosphoglyco 38.4 2.9E+02 0.0062 24.6 9.6 27 54-84 84-110 (279)
105 PRK11657 dsbG disulfide isomer 38.0 40 0.00087 30.2 3.7 29 122-150 124-153 (251)
106 PRK12613 galactose-6-phosphate 37.9 2.4E+02 0.0052 23.6 8.4 109 109-221 16-135 (141)
107 cd03130 GATase1_CobB Type 1 gl 37.8 2.3E+02 0.005 24.2 8.3 44 94-150 38-81 (198)
108 TIGR03006 pepcterm_polyde poly 37.7 3.1E+02 0.0068 24.8 10.1 95 35-129 22-142 (265)
109 PF12146 Hydrolase_4: Putative 37.7 23 0.0005 26.1 1.8 49 99-166 17-65 (79)
110 COG1654 BirA Biotin operon rep 37.7 37 0.0008 25.7 2.9 25 130-154 33-57 (79)
111 cd05008 SIS_GlmS_GlmD_1 SIS (S 37.4 60 0.0013 24.8 4.2 21 95-115 45-66 (126)
112 cd07394 MPP_Vps29 Homo sapiens 37.0 2.5E+02 0.0055 23.5 8.5 84 56-160 31-122 (178)
113 TIGR01120 rpiB ribose 5-phosph 37.0 2.2E+02 0.0047 23.8 7.7 107 109-220 15-136 (143)
114 cd01299 Met_dep_hydrolase_A Me 36.7 3.1E+02 0.0068 24.6 10.2 115 37-153 117-272 (342)
115 cd02513 CMP-NeuAc_Synthase CMP 36.5 2.3E+02 0.0051 23.5 8.0 40 118-157 99-140 (223)
116 PRK09875 putative hydrolase; P 35.9 3.6E+02 0.0077 24.9 12.5 125 7-152 103-243 (292)
117 COG1737 RpiR Transcriptional r 35.9 2E+02 0.0043 26.0 7.9 81 56-137 131-222 (281)
118 PRK06464 phosphoenolpyruvate s 35.3 68 0.0015 33.9 5.3 48 35-83 723-771 (795)
119 PF03435 Saccharop_dh: Sacchar 35.3 1.4E+02 0.0031 27.7 7.0 90 57-151 25-121 (386)
120 PRK15461 NADH-dependent gamma- 34.9 3E+02 0.0065 24.8 8.9 91 44-146 15-115 (296)
121 PRK08811 uroporphyrinogen-III 34.9 64 0.0014 29.1 4.5 78 40-122 78-164 (266)
122 COG0413 PanB Ketopantoate hydr 34.8 3.3E+02 0.0071 25.4 9.0 57 27-84 78-136 (268)
123 PRK02842 light-independent pro 34.8 3.2E+02 0.007 26.2 9.6 105 24-129 129-243 (427)
124 PRK15317 alkyl hydroperoxide r 34.7 3E+02 0.0065 26.9 9.5 52 25-83 120-171 (517)
125 PRK12310 hydroxylamine reducta 34.5 48 0.001 32.7 3.9 60 56-132 125-205 (433)
126 PRK00441 argR arginine repress 34.4 2.7E+02 0.0059 23.2 9.0 31 154-184 113-144 (149)
127 COG1329 Transcriptional regula 34.1 23 0.00051 30.6 1.5 14 95-108 6-19 (166)
128 cd00316 Oxidoreductase_nitroge 34.1 3.8E+02 0.0082 24.7 10.7 103 24-129 111-233 (399)
129 TIGR02494 PFLE_PFLC glycyl-rad 34.1 3.2E+02 0.0068 24.4 8.9 81 57-147 128-217 (295)
130 TIGR03882 cyclo_dehyd_2 bacter 33.7 1.5E+02 0.0031 25.6 6.4 80 69-165 63-159 (193)
131 PRK06559 nicotinate-nucleotide 33.4 4E+02 0.0088 24.9 9.6 101 24-130 168-273 (290)
132 PRK10669 putative cation:proto 33.0 69 0.0015 31.7 4.8 67 97-171 418-487 (558)
133 cd03466 Nitrogenase_NifN_2 Nit 32.9 4.5E+02 0.0098 25.2 11.6 60 23-82 117-185 (429)
134 PRK10329 glutaredoxin-like pro 32.8 2E+02 0.0043 21.1 6.3 71 25-116 3-73 (81)
135 TIGR01119 lacB galactose-6-pho 32.6 2.6E+02 0.0056 24.2 7.6 35 109-143 16-56 (171)
136 TIGR00649 MG423 conserved hypo 32.5 4.4E+02 0.0096 25.0 11.7 122 38-163 229-372 (422)
137 TIGR01118 lacA galactose-6-pho 32.4 3E+02 0.0065 23.0 8.4 108 109-221 16-136 (141)
138 cd00858 GlyRS_anticodon GlyRS 32.4 77 0.0017 24.8 4.1 55 96-154 26-88 (121)
139 TIGR00689 rpiB_lacA_lacB sugar 32.4 2.6E+02 0.0057 23.4 7.4 34 109-142 14-53 (144)
140 TIGR01279 DPOR_bchN light-inde 32.3 4.5E+02 0.0098 25.1 13.1 141 7-156 104-286 (407)
141 PRK10411 DNA-binding transcrip 32.1 51 0.0011 29.3 3.4 66 92-164 89-155 (240)
142 PRK05742 nicotinate-nucleotide 32.0 2.7E+02 0.0058 25.7 8.1 100 24-129 161-264 (277)
143 PRK08621 galactose-6-phosphate 31.8 3.1E+02 0.0067 23.0 8.6 108 109-221 16-136 (142)
144 PRK10537 voltage-gated potassi 31.7 1.1E+02 0.0023 29.6 5.7 74 96-179 240-316 (393)
145 cd01917 ACS_2 Acetyl-CoA synth 31.6 78 0.0017 29.7 4.5 39 114-152 114-162 (287)
146 PRK10886 DnaA initiator-associ 31.3 3.5E+02 0.0076 23.5 9.8 58 94-173 107-165 (196)
147 TIGR03551 F420_cofH 7,8-dideme 31.2 4.3E+02 0.0093 24.5 10.1 73 8-83 74-156 (343)
148 TIGR02144 LysX_arch Lysine bio 31.0 1.6E+02 0.0035 25.6 6.4 59 66-124 11-77 (280)
149 cd06578 HemD Uroporphyrinogen- 30.9 2.2E+02 0.0048 23.6 6.9 65 55-124 78-150 (239)
150 TIGR01670 YrbI-phosphatas 3-de 30.8 2.9E+02 0.0063 22.4 8.0 112 69-203 35-148 (154)
151 PRK12418 cysteinyl-tRNA synthe 30.7 71 0.0015 30.9 4.3 83 57-148 11-123 (384)
152 PF14386 DUF4417: Domain of un 30.6 1.2E+02 0.0025 26.7 5.3 69 68-151 100-175 (200)
153 PRK15428 putative propanediol 30.4 1.2E+02 0.0026 26.2 5.1 61 68-138 11-78 (163)
154 TIGR01418 PEP_synth phosphoeno 30.4 98 0.0021 32.6 5.5 48 35-83 716-764 (782)
155 PF04748 Polysacc_deac_2: Dive 30.0 90 0.0019 27.5 4.5 70 68-158 109-187 (213)
156 TIGR01125 MiaB-like tRNA modif 29.9 75 0.0016 30.4 4.3 10 98-107 38-47 (430)
157 TIGR03278 methan_mark_10 putat 29.8 3.9E+02 0.0085 26.0 9.2 116 39-163 56-190 (404)
158 PF01738 DLH: Dienelactone hyd 29.4 23 0.00051 29.8 0.7 16 32-47 102-117 (218)
159 COG4007 Predicted dehydrogenas 29.2 1.4E+02 0.0029 28.3 5.6 79 38-127 33-117 (340)
160 TIGR00762 DegV EDD domain prot 29.2 2.6E+02 0.0056 25.1 7.5 44 108-152 43-86 (275)
161 COG4015 Predicted dinucleotide 28.9 1.8E+02 0.0039 25.7 6.0 95 23-124 19-139 (217)
162 PRK13936 phosphoheptose isomer 28.9 3.7E+02 0.008 22.9 11.8 57 95-173 110-167 (197)
163 TIGR01703 hybrid_clust hydroxy 28.7 77 0.0017 32.0 4.3 58 57-131 218-296 (522)
164 TIGR01511 ATPase-IB1_Cu copper 28.3 2.6E+02 0.0056 28.0 7.9 44 109-154 433-476 (562)
165 PRK13509 transcriptional repre 28.2 80 0.0017 28.1 4.0 67 91-164 88-155 (251)
166 PRK03562 glutathione-regulated 28.1 1.1E+02 0.0025 31.0 5.5 60 97-164 401-462 (621)
167 COG2242 CobL Precorrin-6B meth 28.1 93 0.002 27.3 4.2 112 30-164 55-173 (187)
168 cd06594 GH31_glucosidase_YihQ 27.9 2E+02 0.0044 26.6 6.7 63 68-146 74-158 (317)
169 cd06578 HemD Uroporphyrinogen- 27.6 1.4E+02 0.0031 24.8 5.2 98 55-154 122-230 (239)
170 PRK08445 hypothetical protein; 27.6 1.9E+02 0.004 27.3 6.5 73 8-83 77-159 (348)
171 TIGR01278 DPOR_BchB light-inde 27.4 4.3E+02 0.0094 26.1 9.2 100 24-123 115-237 (511)
172 PRK12615 galactose-6-phosphate 27.4 3.4E+02 0.0074 23.5 7.5 34 109-142 16-55 (171)
173 TIGR00238 KamA family protein. 27.3 80 0.0017 29.5 3.9 23 135-157 211-233 (331)
174 TIGR03700 mena_SCO4494 putativ 27.1 4.6E+02 0.0099 24.5 9.0 74 7-83 82-165 (351)
175 PRK11177 phosphoenolpyruvate-p 27.1 1.3E+02 0.0028 30.6 5.6 51 32-83 474-524 (575)
176 TIGR01508 rib_reduct_arch 2,5- 26.9 1.7E+02 0.0038 25.2 5.7 53 97-151 90-144 (210)
177 PRK13361 molybdenum cofactor b 26.7 5E+02 0.011 23.8 9.9 59 58-145 96-154 (329)
178 cd03801 GT1_YqgM_like This fam 26.7 3.8E+02 0.0082 22.4 8.4 39 24-62 199-237 (374)
179 COG0449 GlmS Glucosamine 6-pho 26.7 1.8E+02 0.0038 30.0 6.4 66 68-162 106-172 (597)
180 PRK06978 nicotinate-nucleotide 26.6 4.4E+02 0.0095 24.7 8.6 99 24-129 177-280 (294)
181 PRK04280 arginine repressor; P 26.3 3.8E+02 0.0083 22.3 8.4 44 141-184 87-144 (148)
182 PRK06728 aspartate-semialdehyd 26.2 61 0.0013 30.9 2.9 34 94-127 66-100 (347)
183 cd04743 NPD_PKS 2-Nitropropane 26.1 1.4E+02 0.0031 28.2 5.3 46 99-150 84-129 (320)
184 cd01965 Nitrogenase_MoFe_beta_ 26.0 5.8E+02 0.013 24.3 10.2 60 24-83 116-187 (428)
185 PRK07758 hypothetical protein; 25.8 26 0.00057 27.7 0.3 43 70-120 46-92 (95)
186 cd04908 ACT_Bt0572_1 N-termina 25.7 1.1E+02 0.0025 21.0 3.6 47 69-122 17-64 (66)
187 cd01914 HCP Hybrid cluster pro 25.6 77 0.0017 31.2 3.6 59 57-132 119-198 (423)
188 cd03020 DsbA_DsbC_DsbG DsbA fa 25.5 78 0.0017 26.7 3.2 85 55-157 29-120 (197)
189 KOG3327 Thymidylate kinase/ade 25.1 58 0.0013 29.1 2.4 26 117-143 170-195 (208)
190 COG1139 Uncharacterized conser 25.0 2.7E+02 0.0058 27.9 7.1 110 23-145 77-193 (459)
191 PRK08562 rpl32e 50S ribosomal 24.9 1.1E+02 0.0023 25.4 3.8 25 102-126 96-124 (125)
192 PF00702 Hydrolase: haloacid d 24.7 2.5E+02 0.0053 22.8 6.0 67 68-153 133-204 (215)
193 PF00107 ADH_zinc_N: Zinc-bind 24.7 3E+02 0.0064 20.7 6.2 77 56-154 15-92 (130)
194 PRK10658 putative alpha-glucos 24.7 2.4E+02 0.0052 29.2 7.1 63 68-146 328-410 (665)
195 PRK10906 DNA-binding transcrip 24.6 99 0.0021 27.7 3.9 67 91-164 86-154 (252)
196 COG0647 NagD Predicted sugar p 24.5 5.1E+02 0.011 23.8 8.5 67 51-128 87-161 (269)
197 PF01702 TGT: Queuine tRNA-rib 24.3 77 0.0017 27.9 3.1 49 93-151 109-157 (238)
198 TIGR00106 uncharacterized prot 24.2 1.1E+02 0.0024 23.8 3.6 56 3-61 18-73 (97)
199 TIGR02194 GlrX_NrdH Glutaredox 24.2 2.5E+02 0.0055 19.5 5.3 71 25-115 1-71 (72)
200 COG1832 Predicted CoA-binding 24.1 1.8E+02 0.004 24.5 5.1 67 56-123 17-101 (140)
201 PRK02006 murD UDP-N-acetylmura 24.1 3E+02 0.0066 26.7 7.4 72 45-123 22-101 (498)
202 PRK10426 alpha-glucosidase; Pr 24.1 2.8E+02 0.006 28.5 7.4 64 68-147 272-356 (635)
203 cd05014 SIS_Kpsf KpsF-like pro 24.0 2.5E+02 0.0054 21.3 5.7 34 94-127 45-82 (128)
204 cd06599 GH31_glycosidase_Aec37 24.0 3.4E+02 0.0073 25.0 7.4 62 68-145 76-159 (317)
205 PF03698 UPF0180: Uncharacteri 24.0 2.5E+02 0.0054 21.4 5.4 45 69-113 12-72 (80)
206 COG2454 Uncharacterized conser 24.0 4.6E+02 0.01 23.6 7.8 66 39-104 112-188 (211)
207 TIGR01489 DKMTPPase-SF 2,3-dik 23.9 3.7E+02 0.0081 21.4 7.3 19 136-154 153-172 (188)
208 COG3967 DltE Short-chain dehyd 23.9 67 0.0014 29.3 2.6 57 135-207 20-76 (245)
209 PF02579 Nitro_FeMo-Co: Dinitr 23.9 1.8E+02 0.004 20.9 4.6 31 105-135 60-90 (94)
210 PRK05290 hybrid cluster protei 23.8 1.1E+02 0.0023 31.2 4.3 58 57-131 237-315 (546)
211 PRK02472 murD UDP-N-acetylmura 23.5 3.6E+02 0.0077 25.4 7.6 108 44-157 19-147 (447)
212 TIGR01081 mpl UDP-N-acetylmura 23.4 6.5E+02 0.014 24.0 10.1 61 57-123 25-88 (448)
213 PF04914 DltD_C: DltD C-termin 23.4 96 0.0021 25.5 3.3 56 70-156 41-111 (130)
214 TIGR03595 Obg_CgtA_exten Obg f 23.4 77 0.0017 23.1 2.4 8 96-103 56-63 (69)
215 PLN02383 aspartate semialdehyd 23.3 77 0.0017 29.9 3.0 33 97-129 70-103 (344)
216 PRK11061 fused phosphoenolpyru 23.2 1.6E+02 0.0034 30.9 5.5 51 32-83 640-690 (748)
217 PRK15427 colanic acid biosynth 23.1 5.6E+02 0.012 24.1 8.8 97 25-123 223-332 (406)
218 COG0118 HisH Glutamine amidotr 22.9 1.5E+02 0.0032 26.6 4.5 48 69-120 16-63 (204)
219 PRK05613 O-acetylhomoserine am 22.8 5.8E+02 0.013 24.7 9.0 90 35-127 90-194 (437)
220 PRK09525 lacZ beta-D-galactosi 22.6 4.3E+02 0.0093 28.8 8.8 46 108-161 396-457 (1027)
221 TIGR02133 RPI_actino ribose 5- 22.5 4.6E+02 0.01 21.9 9.5 110 109-222 16-141 (148)
222 PF02863 Arg_repressor_C: Argi 22.3 99 0.0022 22.3 2.8 31 154-184 36-67 (70)
223 cd05844 GT1_like_7 Glycosyltra 22.2 5.4E+02 0.012 22.6 8.1 39 25-63 189-227 (367)
224 PF01118 Semialdhyde_dh: Semia 22.1 43 0.00093 26.1 0.9 36 91-126 61-97 (121)
225 PTZ00159 60S ribosomal protein 22.0 1.6E+02 0.0035 24.6 4.3 48 64-129 76-127 (133)
226 COG0482 TrmU Predicted tRNA(5- 21.7 1.3E+02 0.0027 29.1 4.1 79 137-228 20-104 (356)
227 COG1834 N-Dimethylarginine dim 21.5 1.1E+02 0.0023 28.4 3.5 58 68-127 190-252 (267)
228 cd06592 GH31_glucosidase_KIAA1 21.5 1.1E+02 0.0023 28.1 3.5 16 68-83 73-88 (303)
229 PRK10150 beta-D-glucuronidase; 21.3 4.4E+02 0.0095 26.4 8.1 22 104-125 333-355 (604)
230 PF05382 Amidase_5: Bacterioph 21.2 2E+02 0.0043 24.2 4.8 56 46-108 35-90 (145)
231 PRK05571 ribose-5-phosphate is 21.2 5E+02 0.011 21.8 7.5 108 109-221 16-139 (148)
232 PF02645 DegV: Uncharacterised 21.2 5E+02 0.011 23.2 7.8 71 72-151 15-87 (280)
233 PRK09599 6-phosphogluconate de 21.1 4.2E+02 0.009 23.9 7.3 35 44-83 14-48 (301)
234 PF03537 Glyco_hydro_114: Glyc 21.0 1.3E+02 0.0029 22.0 3.3 26 98-123 28-53 (74)
235 cd05280 MDR_yhdh_yhfp Yhdh and 20.9 3.7E+02 0.008 23.3 6.7 87 69-158 162-250 (325)
236 cd03063 TRX_Fd_FDH_beta TRX-li 20.8 1.2E+02 0.0026 23.5 3.1 26 7-37 21-46 (92)
237 COG2217 ZntA Cation transport 20.7 3.1E+02 0.0067 28.8 7.0 68 67-154 542-609 (713)
238 PRK14571 D-alanyl-alanine synt 20.7 2.2E+02 0.0048 25.5 5.3 28 96-123 53-83 (299)
239 PRK08385 nicotinate-nucleotide 20.6 6.8E+02 0.015 23.1 9.8 98 25-129 156-262 (278)
240 PF09269 DUF1967: Domain of un 20.6 92 0.002 22.6 2.4 9 95-103 55-63 (69)
241 PF08052 PyrBI_leader: PyrBI o 20.6 24 0.00051 23.8 -0.7 12 30-41 33-44 (44)
242 TIGR02263 benz_CoA_red_C benzo 20.6 2.4E+02 0.0053 26.7 5.9 54 31-84 201-264 (380)
243 PF01591 6PF2K: 6-phosphofruct 20.5 1.8E+02 0.0039 25.9 4.7 63 111-184 87-153 (222)
244 TIGR02493 PFLA pyruvate format 20.5 5.4E+02 0.012 21.9 9.1 79 58-146 70-158 (235)
245 COG0761 lytB 4-Hydroxy-3-methy 20.4 1.8E+02 0.0039 27.4 4.7 72 108-179 173-252 (294)
246 COG2871 NqrF Na+-transporting 20.3 74 0.0016 30.5 2.2 24 57-80 376-399 (410)
247 cd01076 NAD_bind_1_Glu_DH NAD( 20.2 4.4E+02 0.0094 23.3 7.0 75 37-121 12-87 (227)
248 cd07057 BMC_CcmK Carbon dioxid 20.2 1.5E+02 0.0033 22.7 3.6 31 38-69 49-79 (88)
249 TIGR03212 uraD_N-term-dom puta 20.2 1E+02 0.0022 28.6 3.1 49 35-83 71-121 (297)
250 PRK11302 DNA-binding transcrip 20.1 6E+02 0.013 22.3 8.6 70 56-126 129-209 (284)
251 COG4770 Acetyl/propionyl-CoA c 20.1 1.5E+02 0.0032 30.7 4.3 98 61-180 82-180 (645)
252 COG1298 FlhA Flagellar biosynt 20.1 1.3E+02 0.0028 31.5 4.0 47 97-143 450-501 (696)
253 cd01994 Alpha_ANH_like_IV This 20.0 3.3E+02 0.0072 23.4 6.1 51 104-154 42-98 (194)
No 1
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=100.00 E-value=6.2e-86 Score=626.43 Aligned_cols=237 Identities=84% Similarity=1.307 Sum_probs=230.3
Q ss_pred CCccc-chhHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCc
Q 026546 1 MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV 79 (237)
Q Consensus 1 ~~~~~-~s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv 79 (237)
|.++| +|+||++||+|||.|.||+|+|+||+++||||||+|||++|+++++++|+++||++|||||||+|+++|++|||
T Consensus 81 ~~~~y~~s~li~~~r~~~~~~~~g~m~I~LA~~~GFC~GVeRAV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV 160 (460)
T PLN02821 81 MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNV 160 (460)
T ss_pred hhhhhhccHHHHHHHhCCCeEEecceEEEEeCCCCCCccHHHHHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCC
Confidence 46788 99999999999999999999999999999999999999999999988887899999999999999999999999
Q ss_pred EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCccee
Q 026546 80 QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (237)
Q Consensus 80 ~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~ 159 (237)
+|++..++.++++++++||+|||||||+||+++++|++||+.|||||||||+|||+.|+++.++||++|||||++||||+
T Consensus 161 ~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~ 240 (460)
T PLN02821 161 QFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETV 240 (460)
T ss_pred EEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCccee
Confidence 99997777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCeeEEEcChhhHHhhhhhhcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhcC
Q 026546 160 ATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237 (237)
Q Consensus 160 g~~g~a~~~~vv~~~~e~~~~~~~~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i~ 237 (237)
||.|||++++||++++|++++|+||+++++|+|++++++|+++|++++|+||||+.+++|||++|||||+++||++|+
T Consensus 241 gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~ 318 (460)
T PLN02821 241 ATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIG 318 (460)
T ss_pred ecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHH
Confidence 999999989999999999999999999999999999999999999999999999999999999999999999999984
No 2
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=4.3e-77 Score=558.49 Aligned_cols=229 Identities=66% Similarity=1.136 Sum_probs=218.9
Q ss_pred CcccchhHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEE
Q 026546 2 NQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQN 81 (237)
Q Consensus 2 ~~~~~s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~ 81 (237)
..+|||+||++||++|++|.+|+|+|+||+++||||||+|||++|+++++++++++||++|||||||+|+++|+++||++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~m~I~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~vytlG~IIHNp~Vv~~L~~~Gv~~ 94 (387)
T PRK13371 15 ETAYQSSLIQSIRENGYVLQFGDVTIKLARAFGFCWGVERAVAMAYETRRHFPDERIWITNEIIHNPSVNQHLREMGVRF 94 (387)
T ss_pred HHHHhHHHHHHHHhCCCeeeeCCeEEEEeCCCCCCccHHHHHHHHHHHHhhcCCCCeEEecCCcCCHHHHHHHHhCCCEE
Confidence 46899999999999999999999999999999999999999999999987776679999999999999999999999999
Q ss_pred ecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeee
Q 026546 82 IPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT 161 (237)
Q Consensus 82 v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~ 161 (237)
+++.++.++++++++|++|||||||+||+++++|++||+.|||||||+|+|+|++|++++++||+|||||+++||||+||
T Consensus 95 v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~v~~~~~~Gy~iIIiG~~~HpEV~Gi 174 (387)
T PRK13371 95 IPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNTVEKHKKKDFTSIIHGKYKHEETRAT 174 (387)
T ss_pred EcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHHHHHHHhCCCEEEEEcCCCCcceeee
Confidence 98644445689999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCeeEEEcChhhHHhhhhhhcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546 162 ASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI 236 (237)
Q Consensus 162 ~g~a~~~~vv~~~~e~~~~~~~~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i 236 (237)
.||+++++||++++|++++++|+..+ .++.+|+++|..+.|++|||+.+++|++++|||||+.++|.+|
T Consensus 175 ~g~a~~~~VV~~~~e~~~l~~~~~~~------~~~~~~~~~f~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~i 243 (387)
T PRK13371 175 SSFAGTYLVVLDLEEAQYVADYILGG------GDREEFLERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEI 243 (387)
T ss_pred ccccCceEEECCHHHHHHHhhhhccc------cchhhhhhhhhhcccccCCccCCCccEEEEECCCCcHHHHHHH
Confidence 99998889999999999999999998 7899999999999999999999999999999999999999987
No 3
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=100.00 E-value=1e-64 Score=457.80 Aligned_cols=175 Identities=29% Similarity=0.451 Sum_probs=162.4
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEc
Q 026546 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP 103 (237)
Q Consensus 24 ~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIir 103 (237)
+|+|+||+|+||||||+|||++|++++++|+ +|||++||||||++|+++|+++|+.|+++ ++++|+|++||||
T Consensus 1 ~~~I~lA~prGFCaGV~RAI~ive~al~~~g-~pIyv~~eIVHN~~Vv~~L~~~g~~fve~------l~e~p~~~~VIfs 73 (294)
T COG0761 1 MMKILLAKPRGFCAGVDRAIQIVERALEEYG-APIYVRHEIVHNRYVVDRLREKGAIFVEE------LDEVPDGATVIFS 73 (294)
T ss_pred CceEEEecCCccchhHHHHHHHHHHHHHHcC-CCeEEEeccccCHHHHHHHHHcCCEeccc------cccCCCCCEEEEE
Confidence 4899999999999999999999999999986 68999999999999999999999999984 7999999999999
Q ss_pred CCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc-C-eeEEEcChhhHHhhh
Q 026546 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-G-KYIIVKNMKEAEYVC 181 (237)
Q Consensus 104 AHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a-~-~~~vv~~~~e~~~~~ 181 (237)
|||+||++++.|++||++++|||||||+|+|+.|++++++||+||+|||++||||+||+|++ + ..+++++++|++.+.
T Consensus 74 AHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~ 153 (294)
T COG0761 74 AHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLK 153 (294)
T ss_pred CCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999954 4 389999999997651
Q ss_pred hhhcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhcC
Q 026546 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237 (237)
Q Consensus 182 ~~~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i~ 237 (237)
....++++|+||||||++||++|.
T Consensus 154 --------------------------------~~~~~~l~~~tQTTls~ddt~~Iv 177 (294)
T COG0761 154 --------------------------------VQLPDKLAFVTQTTLSVDDTAEIV 177 (294)
T ss_pred --------------------------------cCCcccEEEEeeeecCHHHHHHHH
Confidence 123349999999999999999873
No 4
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=1.2e-62 Score=446.03 Aligned_cols=174 Identities=33% Similarity=0.561 Sum_probs=159.8
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA 104 (237)
|+|+||+++||||||+|||++|++++..+++++||++|||||||+|+++|+++||.++++ ++++++++|++|||||
T Consensus 1 M~I~lA~~~GFC~GV~rAi~~a~~~~~~~~~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v~~----~~~~~v~~~~~ViirA 76 (281)
T PRK12360 1 MKILIAKNAGFCFGVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLEEKGVKTIEE----SEIDSLKEGDVVIIRS 76 (281)
T ss_pred CEEEEeCCCCCCccHHHHHHHHHHHHHhcCCCCeEEecCCcCCHHHHHHHHHCcCEEECc----CchhhCCCCCEEEEeC
Confidence 899999999999999999999999877665679999999999999999999999999943 2478999899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHhhhhh
Q 026546 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (237)
Q Consensus 105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~~~~~ 183 (237)
||+||+++++|++||+.|||||||||+|+|+.|+++.++||+|||+|+++||||+|+.||++ .++||++++|++.+
T Consensus 77 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l--- 153 (281)
T PRK12360 77 HGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVENI--- 153 (281)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEcCCCCceeeEeccCcCCCeEEECCHHHHhhC---
Confidence 99999999999999999999999999999999999999999999999999999999999996 56899999999754
Q ss_pred hcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI 236 (237)
Q Consensus 184 ~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i 236 (237)
| .++++++++||||+.+++.+|
T Consensus 154 -----------------------------~--~~~kv~~vsQTT~~~~~~~~i 175 (281)
T PRK12360 154 -----------------------------P--FLDKACVVAQTTIIPELWEDI 175 (281)
T ss_pred -----------------------------c--cccCEEEEECCCCcHHHHHHH
Confidence 1 126899999999999998876
No 5
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=100.00 E-value=2e-61 Score=441.19 Aligned_cols=173 Identities=29% Similarity=0.468 Sum_probs=159.3
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA 104 (237)
|+|+||+++||||||+|||++|++++.++ +++||++|||||||+|+++|+++||.++++ ++++++|++|||||
T Consensus 1 MkI~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iytlG~iIHN~~vv~~L~~~GV~~v~~------~~~v~~~~~ViirA 73 (298)
T PRK01045 1 MKILLANPRGFCAGVDRAIEIVERALEKY-GAPIYVRHEIVHNRYVVERLEKKGAIFVEE------LDEVPDGAIVIFSA 73 (298)
T ss_pred CEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCeEEEecCccCHHHHHHHHHCCCEEecC------cccCCCCCEEEEeC
Confidence 89999999999999999999999987654 468999999999999999999999999974 78898899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHhhhhh
Q 026546 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (237)
Q Consensus 105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~~~~~ 183 (237)
||+||+++++|++||+.|||||||||+|+|+.|+++.++||+|||+|+++||||+|+.||++ .++|+++++|++.+.
T Consensus 74 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~e~~~l~-- 151 (298)
T PRK01045 74 HGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKLE-- 151 (298)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEEcCHHHHhhcc--
Confidence 99999999999999999999999999999999999999999999999999999999999995 578999999997541
Q ss_pred hcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI 236 (237)
Q Consensus 184 ~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i 236 (237)
..+.+++++++||||+.+++++|
T Consensus 152 ------------------------------~~~~~~v~vvsQTT~~~~~~~~i 174 (298)
T PRK01045 152 ------------------------------VKDPDKLALVTQTTLSVDDTAEI 174 (298)
T ss_pred ------------------------------cCCCCcEEEEEcCCCcHHHHHHH
Confidence 12457899999999999998876
No 6
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=100.00 E-value=3.6e-61 Score=436.31 Aligned_cols=170 Identities=36% Similarity=0.582 Sum_probs=155.5
Q ss_pred EEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCc-EEecCCccccccccccCCCEEEEcC
Q 026546 26 KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV-QNIPVEEGKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 26 ~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv-~~v~~~~~~~~~~~v~~g~~VIirA 104 (237)
+|+||+++||||||+|||++|+++++.. +++||++|||||||+|+++|+++|| .+++ +++++++|++|||||
T Consensus 1 ~I~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~------~~~~v~~~~~ViirA 73 (280)
T TIGR00216 1 DIILAKPRGFCFGVKRAIQMAEEALKES-GKPVYTLGPIVHNPQVVERLRERGVFFFLE------DLDEVAAGDTVIIRA 73 (280)
T ss_pred CEEEccCCCCCccHHHHHHHHHHHHhhc-CCCeEEecCCccCHHHHHHHHHCCCEEeec------CcccCCCCCEEEEeC
Confidence 5899999999999999999999988654 4799999999999999999999996 7776 478999899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHhhhhh
Q 026546 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (237)
Q Consensus 105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~~~~~ 183 (237)
||+||+++++|+++|+.|||||||||+|+|+.|+++.++||+|||+|+++||||+|+.||++ .++||++++|++.+
T Consensus 74 HGv~~~~~~~~~~~gl~viDaTCP~V~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l--- 150 (280)
T TIGR00216 74 HGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENF--- 150 (280)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCcccHHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhC---
Confidence 99999999999999999999999999999999999999999999999999999999999996 46899999998654
Q ss_pred hcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI 236 (237)
Q Consensus 184 ~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i 236 (237)
| ..+++++++||||+.+++++|
T Consensus 151 -----------------------------~--~~~~v~vvsQTT~~~~~~~~i 172 (280)
T TIGR00216 151 -----------------------------K--VEDLLGVVSQTTLSQEDTKEI 172 (280)
T ss_pred -----------------------------C--CCCcEEEEEcCCCcHHHHHHH
Confidence 1 135799999999999999876
No 7
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=100.00 E-value=4.9e-61 Score=435.67 Aligned_cols=171 Identities=36% Similarity=0.594 Sum_probs=141.1
Q ss_pred EEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCC
Q 026546 27 VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 106 (237)
Q Consensus 27 I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHG 106 (237)
|+||+++||||||+|||++|++++++++ ++||++|||||||+|+++|+++||+++++ ++++|+|++|||||||
T Consensus 1 I~lA~~~GfC~GV~rAi~~a~~~~~~~~-~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~------~~~~~~g~~ViirAHG 73 (281)
T PF02401_consen 1 IILAKPAGFCFGVKRAIEIAEEALEEYP-GPVYTLGPIIHNPQVVERLEKRGVKVVDD------IDEVPEGDTVIIRAHG 73 (281)
T ss_dssp EEE-TT-SS-HHHHHHHHHHHHHCCCHS-S-EEECS-SSS-HHHHHHHHHCTEEEESS------GCGS-TTEEEEE-TT-
T ss_pred CEecCCCCcCccHHHHHHHHHHHHHhcC-CCEEEecCcccCHHHHHHHHHCCCEEecC------ccccCCCCEEEEeCCC
Confidence 6899999999999999999999998765 49999999999999999999999999985 6889999999999999
Q ss_pred CCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC--eeEEEcChhhHHhhhhhh
Q 026546 107 AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG--KYIIVKNMKEAEYVCDYI 184 (237)
Q Consensus 107 v~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~--~~~vv~~~~e~~~~~~~~ 184 (237)
+||+++++|+++|+.|||||||||+|+|+.|++++++||+|||+|+++||||+|++||++ .++++++.+|++.+
T Consensus 74 v~~~~~~~l~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~~vv~~~~~~~~l---- 149 (281)
T PF02401_consen 74 VPPEVYEELKERGLEVIDATCPFVKKIHKIVRKYAKEGYQIVIIGDKNHPEVIGILGYAPEEKAIVVESPEDVEKL---- 149 (281)
T ss_dssp --HHHHHHHHHTTEEEEE---HHHHHHHHHHHHHHHCT-EEEEES-TT-HHHHHHHCCHHTS-EEEESSHHHHHHG----
T ss_pred CCHHHHHHHHHcCCEEEECCChhHHHHHHHHHHHHhcCCEEEEECCCCCceEEEecccccCCceEEeCChhhhccc----
Confidence 999999999999999999999999999999999999999999999999999999999997 68999999999654
Q ss_pred cCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546 185 LGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI 236 (237)
Q Consensus 185 ~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i 236 (237)
|..+++++++++||||+.+++++|
T Consensus 150 ----------------------------~~~~~~kv~vvsQTT~~~~~~~~i 173 (281)
T PF02401_consen 150 ----------------------------PISDPKKVAVVSQTTQSVEKFEEI 173 (281)
T ss_dssp ----------------------------GGSSTTCEEEEE-TTS-HHHHHHH
T ss_pred ----------------------------CCCCCCeEEEEEeecccHHHHHHH
Confidence 334567999999999999999886
No 8
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=6.7e-57 Score=445.99 Aligned_cols=171 Identities=29% Similarity=0.529 Sum_probs=158.7
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA 104 (237)
|+|+||+++||||||+|||++|++++.++ +++||++|||||||+|+++|+++||+++++ ++++++|++|||||
T Consensus 1 m~i~~a~~~GfC~GV~rAi~~~~~~~~~~-~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~~------~~~~~~~~~vii~a 73 (647)
T PRK00087 1 MEIILAKKAGFCFGVKRAVDTAIKTAEEL-KGKIYTLGPLIHNNQVVEKLKKKGIKPIED------IDELNEGDTIIIRS 73 (647)
T ss_pred CEEEEeCCCCcCccHHHHHHHHHHHHHhc-CCCEEEeCCCcCCHHHHHHHHHCCCEEeCC------HhhCCCCCEEEEeC
Confidence 89999999999999999999999987765 379999999999999999999999999974 78999899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHhhhhh
Q 026546 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (237)
Q Consensus 105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~~~~~ 183 (237)
||+||+++++|+++|+.|||||||||+|+|+.|++++++||+|||+|+++||||+|+.||++ .++|+++++|++.+
T Consensus 74 HG~~~~~~~~~~~~~~~viDaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~~g~~~~~~~vv~~~~~~~~~--- 150 (647)
T PRK00087 74 HGVPPEVLEELKDKGLKVIDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGINGWCNNSAIIVEDGEEAEKL--- 150 (647)
T ss_pred CCCCHHHHHHHHHCCCeEEECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccccCCCEEEECCHHHHhhC---
Confidence 99999999999999999999999999999999999999999999999999999999999996 47899999999653
Q ss_pred hcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI 236 (237)
Q Consensus 184 ~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i 236 (237)
| ..+++++++||||+.+++++|
T Consensus 151 -----------------------------~--~~~~~~~~~QTT~~~~~~~~~ 172 (647)
T PRK00087 151 -----------------------------P--FDKKICVVSQTTEKQENFEKV 172 (647)
T ss_pred -----------------------------C--CCCCEEEEEcCCCcHHHHHHH
Confidence 1 126899999999999999876
No 9
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=93.15 E-value=1.2 Score=41.27 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=89.4
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHH--h-cCcEEecCCccccccccccC---CCEEEEcCCCCCH
Q 026546 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLE--E-MAVQNIPVEEGKKQFDVVNK---GDVVVLPAFGAAV 109 (237)
Q Consensus 36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~--~-~Gv~~v~~~~~~~~~~~v~~---g~~VIirAHGv~~ 109 (237)
|.=|.++-+++.+..++ +-.|.+.|.-=| |+|..-+- . ..+.++++.+ +++.+|. ....+++==-.+.
T Consensus 94 CP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~~vv~~~~---~~~~l~~~~~~kv~vvsQTT~~~ 167 (281)
T PF02401_consen 94 CPFVKKIHKIVRKYAKE--GYQIVIIGDKNH-PEVIGILGYAPEEKAIVVESPE---DVEKLPISDPKKVAVVSQTTQSV 167 (281)
T ss_dssp -HHHHHHHHHHHHHHHC--T-EEEEES-TT--HHHHHHHCCHHTS-EEEESSHH---HHHHGGGSSTTCEEEEE-TTS-H
T ss_pred ChhHHHHHHHHHHHHhc--CCEEEEECCCCC-ceEEEecccccCCceEEeCChh---hhcccCCCCCCeEEEEEeecccH
Confidence 77778887888777664 347999998555 44544431 1 2455565432 3333432 3466777666665
Q ss_pred ----HHHHHHHhcCCcEE----eCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhH
Q 026546 110 ----EEMVTLNNKNVQIV----DTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEA 177 (237)
Q Consensus 110 ----~v~~~l~~~g~~iv----DaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~ 177 (237)
++.+.|+++.-.+. |+-|+.-..=|..+++++++-.-+|++|.++-.-+.-+.--| .+.+.+++++|+
T Consensus 168 ~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el 247 (281)
T PF02401_consen 168 EKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADEL 247 (281)
T ss_dssp HHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG-
T ss_pred HHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCcccc
Confidence 66777888877776 999999999999999999999999999999998888776543 468999999999
Q ss_pred H
Q 026546 178 E 178 (237)
Q Consensus 178 ~ 178 (237)
.
T Consensus 248 ~ 248 (281)
T PF02401_consen 248 D 248 (281)
T ss_dssp -
T ss_pred C
Confidence 5
No 10
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=87.99 E-value=7.3 Score=34.43 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=84.7
Q ss_pred cchhHHHHHHHcCCc-cee-----cc---eEEEEeCCCCCcccH---HHHHHHHHHHHhhCC-----CCceEEecccccC
Q 026546 5 YTSDIIKKLKENGFE-YTW-----GN---VKVKLAESYGFCWGV---ERAVQIAYEARKQFP-----EEKIWITNEIIHN 67 (237)
Q Consensus 5 ~~s~~i~~~~~~~~~-~~~-----g~---m~I~lA~~~GFC~GV---~RAv~~a~~a~~~~~-----~~~vy~lgeiIHN 67 (237)
..+++.+.++..|+. +.+ .+ ++..+..-.+|+|=+ .+|++...+.+.... +.+++..|+
T Consensus 12 ~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~i~aVG~---- 87 (248)
T COG1587 12 QAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKNKKIAAVGE---- 87 (248)
T ss_pred hhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHhhcccccccCeEEEEcH----
Confidence 457888899999862 222 22 333333333455422 556666655544332 368999995
Q ss_pred HHHHHHHHhcCcEEecCCc--c-cc---ccccccCC--CEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcChhhHHHH
Q 026546 68 PTVNKRLEEMAVQNIPVEE--G-KK---QFDVVNKG--DVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPWVSKVW 134 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~--~-~~---~~~~v~~g--~~VIirAHGv~~~v~~~l~~~g~~i-----vDaTCP~V~kv~ 134 (237)
.--+.|++.|++..--.+ . .. .+.+..++ .++++|++|..+...+.|.++|..+ +++.+|... .+
T Consensus 88 -~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~-~~ 165 (248)
T COG1587 88 -KTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLD-EA 165 (248)
T ss_pred -HHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCcc-HH
Confidence 667999999977443211 1 11 22222222 4578888888899999999999988 444444444 55
Q ss_pred HHHHHHhhCCCeEEEE
Q 026546 135 TSVEKHKKGDYTSIIH 150 (237)
Q Consensus 135 ~~v~~~~~~Gy~ivIi 150 (237)
.....+..+++.+|++
T Consensus 166 ~~~~~~~~~~~d~v~f 181 (248)
T COG1587 166 TLIELLKLGEVDAVVF 181 (248)
T ss_pred HHHHHHHhCCCCEEEE
Confidence 5556666666655544
No 11
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=87.69 E-value=7.3 Score=33.16 Aligned_cols=139 Identities=16% Similarity=0.215 Sum_probs=79.6
Q ss_pred hhHHHHHHHcCCcceecc-eEEEE-----------e-----CCCCCcccHHHHHHHHHHHHh-------hCCCCceEEec
Q 026546 7 SDIIKKLKENGFEYTWGN-VKVKL-----------A-----ESYGFCWGVERAVQIAYEARK-------QFPEEKIWITN 62 (237)
Q Consensus 7 s~~i~~~~~~~~~~~~g~-m~I~l-----------A-----~~~GFC~GV~RAv~~a~~a~~-------~~~~~~vy~lg 62 (237)
|++.+++++.|+....=+ +++.- . ..-++.|==.+||+...+.++ ...+.++|+.|
T Consensus 1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG 80 (231)
T PF02602_consen 1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG 80 (231)
T ss_dssp -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence 567788888885554433 23332 1 344455544566666444332 11135799887
Q ss_pred ccccCHHHHHHHHhcCcEE--ecC-Cccccc----cc-cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcC---hhhH
Q 026546 63 EIIHNPTVNKRLEEMAVQN--IPV-EEGKKQ----FD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC---PWVS 131 (237)
Q Consensus 63 eiIHN~~Vv~~L~~~Gv~~--v~~-~~~~~~----~~-~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTC---P~V~ 131 (237)
+..-+.|++.|+.. +.. ....+. +. .+..+.++++++.+..+...+.|+++|+.|.-..| |...
T Consensus 81 -----~~Ta~~l~~~G~~~~~~~~~~~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~ 155 (231)
T PF02602_consen 81 -----PKTAEALREYGFQPDFVPSSEGSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEE 155 (231)
T ss_dssp -----HHHHHHHHHTT-EECEE-TTSSSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHH
T ss_pred -----HHHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeeccccc
Confidence 46678999999997 554 222122 22 23334578899999999999999999988733222 3333
Q ss_pred HHHHHHHHHhhCCCeEEEE
Q 026546 132 KVWTSVEKHKKGDYTSIIH 150 (237)
Q Consensus 132 kv~~~v~~~~~~Gy~ivIi 150 (237)
.--.....+.+..+.+|++
T Consensus 156 ~~~~~~~~l~~~~~~~v~f 174 (231)
T PF02602_consen 156 LSPELKEALDRGEIDAVVF 174 (231)
T ss_dssp HHHHHHHHHHHTTTSEEEE
T ss_pred chHHHHHHHHcCCCCEEEE
Confidence 3344445555555544444
No 12
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=87.30 E-value=3 Score=37.63 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=69.2
Q ss_pred CHHHHHHHHhcCc---EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhh
Q 026546 67 NPTVNKRLEEMAV---QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKK 142 (237)
Q Consensus 67 N~~Vv~~L~~~Gv---~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~~~~ 142 (237)
-+.+.+.|.++|. .++.+..+ +.+..-..+..|.+-..|-..+..+.++++|+.. ||||=||-..+++.+.+.++
T Consensus 12 ~r~la~~L~~~g~v~~sv~t~~g~-~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~ 90 (249)
T PF02571_consen 12 GRKLAERLAEAGYVIVSVATSYGG-ELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACR 90 (249)
T ss_pred HHHHHHHHHhcCCEEEEEEhhhhH-hhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHh
Confidence 3567788888884 44443211 1111111234688888887788888999999986 99999999999999988776
Q ss_pred C-CCeEEEEecCCCcceeeeccccCeeEEEcChhhHHhhh
Q 026546 143 G-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVC 181 (237)
Q Consensus 143 ~-Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~~~e~~~~~ 181 (237)
+ |-.-+=+-.+. ..... .++.+.+.|.+|+-...
T Consensus 91 ~~~ipylR~eRp~---~~~~~--~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 91 ELGIPYLRFERPS---WQPEP--DDNWHYVDSYEEAAELL 125 (249)
T ss_pred hcCcceEEEEcCC---cccCC--CCeEEEeCCHHHHHHHH
Confidence 5 44433333322 11100 23466778888875543
No 13
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=86.31 E-value=3.1 Score=38.78 Aligned_cols=138 Identities=12% Similarity=0.150 Sum_probs=88.1
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc--CcEEecCCccccccccc--cC-CCEEEEcCCCCCHH
Q 026546 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVV--NK-GDVVVLPAFGAAVE 110 (237)
Q Consensus 36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~v--~~-g~~VIirAHGv~~~ 110 (237)
|.=|+++-..+.+..++ +-.|.+.|+==| |.|..-+--- ...++++. ++++.+ +. ..+.+++==-.+.+
T Consensus 96 CP~V~k~~~~v~~~~~~--Gy~vvi~G~~~H-pEv~gi~g~~~~~~~vv~~~---~e~~~l~~~~~~~v~vvsQTT~~~~ 169 (298)
T PRK01045 96 CPLVTKVHKEVARMSRE--GYEIILIGHKGH-PEVEGTMGQAPGGVYLVESP---EDVAKLEVKDPDKLALVTQTTLSVD 169 (298)
T ss_pred CccchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccCcCCCEEEEcCH---HHHhhcccCCCCcEEEEEcCCCcHH
Confidence 66666666666665554 235777776444 3332222111 12233332 133344 22 23445554444444
Q ss_pred ----HHHHHHhcC--CcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhHH
Q 026546 111 ----EMVTLNNKN--VQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE 178 (237)
Q Consensus 111 ----v~~~l~~~g--~~i--vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~~ 178 (237)
+.+.|+++. +.+ .|+-|.....=|+.+++++++=--+|++|.++-.-+.=+..-| .+.+.+++.+|++
T Consensus 170 ~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~ 249 (298)
T PRK01045 170 DTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEID 249 (298)
T ss_pred HHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCc
Confidence 555666554 777 9999999999999999999999999999999999888775443 4678899999986
Q ss_pred h
Q 026546 179 Y 179 (237)
Q Consensus 179 ~ 179 (237)
.
T Consensus 250 ~ 250 (298)
T PRK01045 250 P 250 (298)
T ss_pred H
Confidence 3
No 14
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=85.09 E-value=4.7 Score=36.42 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=68.8
Q ss_pred eEEecccccCHHHHHHHHhcCcEEecCCccc-cccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHHH
Q 026546 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGK-KQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWT 135 (237)
Q Consensus 58 vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~-~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~i-vDaTCP~V~kv~~ 135 (237)
|+++|==---+.+.+.|.++|..++-..-+. .... ..+..|..-..|-..+..+.+++.++.. ||||=||-..+.+
T Consensus 5 IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~~~--~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~ 82 (248)
T PRK08057 5 ILLLGGTSEARALARALAAAGVDIVLSLAGRTGGPA--DLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISA 82 (248)
T ss_pred EEEEechHHHHHHHHHHHhCCCeEEEEEccCCCCcc--cCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHH
Confidence 4443333344566777777777655332110 0111 1133465666666677888888888876 9999999999999
Q ss_pred HHHHHhhC-CCeEEEEecCCCcceeeeccccCeeEEEcChhhHHhhh
Q 026546 136 SVEKHKKG-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVC 181 (237)
Q Consensus 136 ~v~~~~~~-Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~~~e~~~~~ 181 (237)
.+.+..++ |-.-+=+-. |+.. ....+..+.+.|.+|+....
T Consensus 83 ~a~~ac~~~~ipyiR~eR---~~~~--~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 83 NAAAACRALGIPYLRLER---PSWL--PQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred HHHHHHHHhCCcEEEEeC---CCcC--CCCCCCEEEECCHHHHHHHh
Confidence 88887665 444444433 2210 00123456778888875543
No 15
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=82.57 E-value=2.6 Score=35.85 Aligned_cols=49 Identities=14% Similarity=0.025 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 026546 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (237)
Q Consensus 109 ~~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpE 157 (237)
...++.+.+++..+ +|+|+..-.+..+.++.+.+.||+|.|+--.-+||
T Consensus 83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e 132 (199)
T PF06414_consen 83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPE 132 (199)
T ss_dssp HHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HH
T ss_pred HHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHH
Confidence 45667777777766 89999999999999999999999999887665544
No 16
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=81.14 E-value=2.1 Score=31.78 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=24.5
Q ss_pred EcCCCCCHH----HHHHHHhcCCcEEeCcChhhHHHHH
Q 026546 102 LPAFGAAVE----EMVTLNNKNVQIVDTTCPWVSKVWT 135 (237)
Q Consensus 102 irAHGv~~~----v~~~l~~~g~~ivDaTCP~V~kv~~ 135 (237)
+|-.|+... ..+.++++|++|+ .+||||.+--+
T Consensus 34 ~rGqGia~~L~~~~l~~a~~~~~kv~-p~C~y~~~~~~ 70 (78)
T PF14542_consen 34 LRGQGIAKKLVEAALDYARENGLKVV-PTCSYVAKYFR 70 (78)
T ss_dssp SSTTTHHHHHHHHHHHHHHHTT-EEE-ETSHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCEEE-EECHHHHHHHH
Confidence 456677655 4667788999999 99999987653
No 17
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=80.05 E-value=9.1 Score=31.53 Aligned_cols=96 Identities=11% Similarity=0.027 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHH-----
Q 026546 42 AVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLN----- 116 (237)
Q Consensus 42 Av~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~----- 116 (237)
.-.+|...++. +-+|+++. .+|.-.++|.+.|+...++ ..++-++.-|||.+---++++.+-+.
T Consensus 13 G~~~a~~L~~~--g~~v~~~d---~~~~~~~~~~~~g~~~~~s------~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 13 GSAMARNLAKA--GYEVTVYD---RSPEKAEALAEAGAEVADS------PAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp HHHHHHHHHHT--TTEEEEEE---SSHHHHHHHHHTTEEEESS------HHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred HHHHHHHHHhc--CCeEEeec---cchhhhhhhHHhhhhhhhh------hhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 34566666654 24688776 6789999999999998875 34443332366666555566655544
Q ss_pred ---hcCCcEEeCcChhhHHHHHHHHHHhhCCCeEE
Q 026546 117 ---NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (237)
Q Consensus 117 ---~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~iv 148 (237)
.+|-.+||+|=-.....++.++++.++|...|
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 37889999999999999999999999995544
No 18
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=79.76 E-value=17 Score=33.86 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=21.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHh
Q 026546 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHK 141 (237)
Q Consensus 99 ~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~ 141 (237)
.+||+|||+|....++ | .|+..-++..++.+.
T Consensus 190 ~llfSaHglP~~~~~~----G-------d~Y~~~~~~ta~~l~ 221 (322)
T TIGR00109 190 VLLFSAHGLPQSYVDE----G-------DPYPAECEATTRLIA 221 (322)
T ss_pred EEEEeCCCCchhHhhC----C-------CChHHHHHHHHHHHH
Confidence 7999999999877653 3 355555555555444
No 19
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.11 E-value=4.3 Score=37.10 Aligned_cols=101 Identities=19% Similarity=0.157 Sum_probs=62.8
Q ss_pred HHHHHHHHhhCCCC---ceEEecccccCHH----HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 026546 43 VQIAYEARKQFPEE---KIWITNEIIHNPT----VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (237)
Q Consensus 43 v~~a~~a~~~~~~~---~vy~lgeiIHN~~----Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l 115 (237)
.+...++..+.++- .=|+=+-+.-|++ +++.|+++|+-|+|+.. .|+-+++.+ +
T Consensus 109 ~~rl~~a~~~v~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk~r~l~flDs~T----------------~a~S~a~~i---A 169 (250)
T COG2861 109 LRRLRKAMNKVPDAVGLNNHMGSRFTSNEDAMEKLMEALKERGLYFLDSGT----------------IANSLAGKI---A 169 (250)
T ss_pred HHHHHHHHhhCccceeehhhhhhhhcCcHHHHHHHHHHHHHCCeEEEcccc----------------cccchhhhh---H
Confidence 34444455444421 1123344566665 56788999999997521 233333332 2
Q ss_pred HhcCCcE------EeCc--ChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecc
Q 026546 116 NNKNVQI------VDTT--CPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS 163 (237)
Q Consensus 116 ~~~g~~i------vDaT--CP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g 163 (237)
++-|+.. +|.+ --.|.|=-+.+.++++++-+.|-||++ ||+|++...
T Consensus 170 k~~gVp~~~rdvfLD~e~~~~~V~kql~~~~~~Ark~G~ai~IGh~-~~~Tv~vl~ 224 (250)
T COG2861 170 KEIGVPVIKRDVFLDDEDTEAAVLKQLDAAEKLARKNGSAIGIGHP-HKNTVAVLQ 224 (250)
T ss_pred hhcCCceeeeeeeecCcCCHHHHHHHHHHHHHHHHhcCceEEecCC-chhHHHHHH
Confidence 3445554 3333 345777778888999999999999999 999887754
No 20
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=78.89 E-value=13 Score=37.71 Aligned_cols=137 Identities=14% Similarity=0.165 Sum_probs=87.7
Q ss_pred chhHHHHHHHcCCcceecce--EE-EEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeccc-----ccCHHHHHHHHhc
Q 026546 6 TSDIIKKLKENGFEYTWGNV--KV-KLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI-----IHNPTVNKRLEEM 77 (237)
Q Consensus 6 ~s~~i~~~~~~~~~~~~g~m--~I-~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgei-----IHN~~Vv~~L~~~ 77 (237)
-|+++.+|=.++..-..... .+ -|-.|+-+ -+.++|++...++.++. ++|.++|.- -=---..+-|++.
T Consensus 20 l~~l~a~iL~~Rgi~~~~~~~~~l~~l~~P~~l-~~m~~a~~ri~~ai~~~--e~I~I~gDyD~DGitstail~~~L~~~ 96 (575)
T PRK11070 20 LPPLLRRLYASRGVRSAQELERSVKGLLPWQQL-SGIEKAVELLYNALREG--TRIIVVGDFDADGATSTALSVLALRSL 96 (575)
T ss_pred CCHHHHHHHHHCCCCCHHHHhhhhhhcCChHHh-hCHHHHHHHHHHHHHCC--CEEEEEEecCccHHHHHHHHHHHHHHc
Confidence 47788877766632211111 11 13344333 59999999999998863 689988852 1112235667777
Q ss_pred CcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 026546 78 AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (237)
Q Consensus 78 Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpE 157 (237)
|...+.- -+|+- +---||++++..+.+.+.|..+| =||=.-..-+..++...+.|..|||.-|...|+
T Consensus 97 g~~~~~~--------~IP~R---~~eGYGl~~~~i~~~~~~~~~Li-ItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~~~ 164 (575)
T PRK11070 97 GCSNVDY--------LVPNR---FEDGYGLSPEVVDQAHARGAQLI-VTVDNGISSHAGVAHAHALGIPVLVTDHHLPGE 164 (575)
T ss_pred CCCceEE--------EeCCC---CcCCCCCCHHHHHHHHhcCCCEE-EEEcCCcCCHHHHHHHHHCCCCEEEECCCCCCC
Confidence 7632210 01110 11247999999999999887664 455555678888888889999999999876654
No 21
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=78.37 E-value=27 Score=30.81 Aligned_cols=142 Identities=11% Similarity=0.130 Sum_probs=82.1
Q ss_pred ccchhHHHHHHHcCCcceecc-eEEEEe-----------CCCCCcccH---HHHHHHHHHHHhhCC----CCceEEeccc
Q 026546 4 EYTSDIIKKLKENGFEYTWGN-VKVKLA-----------ESYGFCWGV---ERAVQIAYEARKQFP----EEKIWITNEI 64 (237)
Q Consensus 4 ~~~s~~i~~~~~~~~~~~~g~-m~I~lA-----------~~~GFC~GV---~RAv~~a~~a~~~~~----~~~vy~lgei 64 (237)
+..+++..++++.|+....-+ ++|.-. +-..|.|=| .+||+...+.+++.. ..++|..|+
T Consensus 13 ~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~~~~~~~~~aVG~- 91 (255)
T PRK05752 13 EECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQPPQQPWFSVGA- 91 (255)
T ss_pred HHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCCCCcCCEEEEECH-
Confidence 345788999999986544433 233211 112444322 677777666554321 247888884
Q ss_pred ccCHHHHHHHHhcCcEEe--cCCcccccc------cc---ccCCCEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcCh
Q 026546 65 IHNPTVNKRLEEMAVQNI--PVEEGKKQF------DV---VNKGDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCP 128 (237)
Q Consensus 65 IHN~~Vv~~L~~~Gv~~v--~~~~~~~~~------~~---v~~g~~VIirAHGv~~~v~~~l~~~g~~i-----vDaTCP 128 (237)
.--+.|++.|+... +...+.+.+ .. .+...++++|+.+-++...+.|+++|..+ +++.||
T Consensus 92 ----~Ta~al~~~G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~ 167 (255)
T PRK05752 92 ----ATAAILQDYGLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCLP 167 (255)
T ss_pred ----HHHHHHHHcCCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecCC
Confidence 55688899998732 222221111 11 12234678999999999999999999776 555555
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEe
Q 026546 129 WVSKVWTSVEKHKKGDYTSIIHG 151 (237)
Q Consensus 129 ~V~kv~~~v~~~~~~Gy~ivIiG 151 (237)
-... ......+...+...|++-
T Consensus 168 ~~~~-~~~~~~~~~~~~d~v~ft 189 (255)
T PRK05752 168 DYPA-GTLLQRVEAERLNGLVVS 189 (255)
T ss_pred CCCH-HHHHHHHHhCCCCEEEEC
Confidence 4222 222233444455555554
No 22
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=76.39 E-value=44 Score=27.91 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhC-CCC-ceEEecccccCHHHHHHHHhcCcEEecC
Q 026546 39 VERAVQIAYEARKQF-PEE-KIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (237)
Q Consensus 39 V~RAv~~a~~a~~~~-~~~-~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~ 84 (237)
+++-|..+.+++++. +.. +.|-.----.|+.+.+.|++.|..++.-
T Consensus 79 ~~~ei~~~~~~l~~~~g~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~w 126 (191)
T TIGR02764 79 IKKDILRAQEIIEKLTGKKPTLFRPPSGAFNKAVLKAAESLGYTVVHW 126 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEECCCcCCCHHHHHHHHHcCCeEEEe
Confidence 344455555555432 112 3454444468999999999999998763
No 23
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=75.27 E-value=37 Score=31.63 Aligned_cols=125 Identities=9% Similarity=0.028 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCE--EEEcCCCCCHHHHHHHH--
Q 026546 41 RAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDV--VVLPAFGAAVEEMVTLN-- 116 (237)
Q Consensus 41 RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~--VIirAHGv~~~v~~~l~-- 116 (237)
.-.+++.+.++.. -.++.+- +|+.-+++|+..|+.-..+.+ +-+..+++..+ |.+||--++.++.+.|.
T Consensus 11 MG~n~v~rl~~~g--hdvV~yD---~n~~av~~~~~~ga~~a~sl~--el~~~L~~pr~vWlMvPag~it~~vi~~la~~ 83 (300)
T COG1023 11 MGANLVRRLLDGG--HDVVGYD---VNQTAVEELKDEGATGAASLD--ELVAKLSAPRIVWLMVPAGDITDAVIDDLAPL 83 (300)
T ss_pred hhHHHHHHHHhCC--CeEEEEc---CCHHHHHHHHhcCCccccCHH--HHHHhcCCCcEEEEEccCCCchHHHHHHHHhh
Confidence 3456788877742 3577775 899999999999976665421 12334444443 56776559999988876
Q ss_pred -hcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc-CeeEEEcChhhH
Q 026546 117 -NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIVKNMKEA 177 (237)
Q Consensus 117 -~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a-~~~~vv~~~~e~ 177 (237)
+.|=.|||.--..-+-.+++.+.+.++|..-+=.|-++- +.|-- +-++.|-.++++
T Consensus 84 L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG-----~~G~~~G~~lMiGG~~~a 141 (300)
T COG1023 84 LSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGG-----VWGAERGYCLMIGGDEEA 141 (300)
T ss_pred cCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCC-----chhhhcCceEEecCcHHH
Confidence 479999999999999999999999999999998886552 22221 234666555554
No 24
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=75.03 E-value=17 Score=31.61 Aligned_cols=142 Identities=11% Similarity=0.011 Sum_probs=78.5
Q ss_pred ccchhHHHHHHHcCCcceecc-eEEE---------EeCC-CCCcccHHHHHHHHHHH---HhhCCCCceEEecccccCHH
Q 026546 4 EYTSDIIKKLKENGFEYTWGN-VKVK---------LAES-YGFCWGVERAVQIAYEA---RKQFPEEKIWITNEIIHNPT 69 (237)
Q Consensus 4 ~~~s~~i~~~~~~~~~~~~g~-m~I~---------lA~~-~GFC~GV~RAv~~a~~a---~~~~~~~~vy~lgeiIHN~~ 69 (237)
+..+.+.+++++.|+....-+ +++. +... -...|==.+||+...+. .+...+.++|+.|+=
T Consensus 10 ~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~naV~~~~~~~~~~~~~~~~~~~aVG~~----- 84 (240)
T PRK09189 10 PAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAEAVRHLAALGERLLPHLALPLFAVGEA----- 84 (240)
T ss_pred CchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHHHHHHHHhcchhhHHhcCCeEEEEcHH-----
Confidence 355778889999985444432 1221 1111 12223336777765432 121224579999964
Q ss_pred HHHHHHhcCcEEe-cCCccccccc-----cc-cCCCEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcChhhHHHHHHH
Q 026546 70 VNKRLEEMAVQNI-PVEEGKKQFD-----VV-NKGDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPWVSKVWTSV 137 (237)
Q Consensus 70 Vv~~L~~~Gv~~v-~~~~~~~~~~-----~v-~~g~~VIirAHGv~~~v~~~l~~~g~~i-----vDaTCP~V~kv~~~v 137 (237)
--+.|++.|+..+ ......+.|- .. +.+.++++|+-+..+...+.|+++|+.+ +++.||--.. -...
T Consensus 85 Ta~~l~~~G~~~~~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~ 163 (240)
T PRK09189 85 TAEAARELGFRHVIEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVMYSP-ATLS 163 (240)
T ss_pred HHHHHHHcCCCCCcCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCCCCh-HHHH
Confidence 4478999998733 2221111121 11 2345788999999999999999999765 6666653221 1222
Q ss_pred HHHhhCCCeEEEEe
Q 026546 138 EKHKKGDYTSIIHG 151 (237)
Q Consensus 138 ~~~~~~Gy~ivIiG 151 (237)
..+.+.+..+|++-
T Consensus 164 ~~l~~~~~d~i~f~ 177 (240)
T PRK09189 164 AILGGAPFDAVLLY 177 (240)
T ss_pred HHHhcCCCCEEEEe
Confidence 33344444444443
No 25
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=74.57 E-value=23 Score=32.33 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=48.7
Q ss_pred hhHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceE--Eeccccc--------CHHHHHHHHh
Q 026546 7 SDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIW--ITNEIIH--------NPTVNKRLEE 76 (237)
Q Consensus 7 s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy--~lgeiIH--------N~~Vv~~L~~ 76 (237)
.+|++.+++. ...|--+|.+.....+-...++..+++....+.+++-.+. +.+++.| .+++.++|++
T Consensus 39 eeI~~~~~~~---~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~Lke 115 (309)
T TIGR00423 39 EEILEKVKEA---VAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKK 115 (309)
T ss_pred HHHHHHHHHH---HHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3566666653 2346667777765566678888888888887765532332 3344433 4788999999
Q ss_pred cCcEEec
Q 026546 77 MAVQNIP 83 (237)
Q Consensus 77 ~Gv~~v~ 83 (237)
.|+..+.
T Consensus 116 AGl~~i~ 122 (309)
T TIGR00423 116 AGLDSMP 122 (309)
T ss_pred cCCCcCC
Confidence 9987663
No 26
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=74.26 E-value=19 Score=33.21 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=71.9
Q ss_pred ceEEecccccCHHHHHHHHhcC-cEEecCCcc-ccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHH
Q 026546 57 KIWITNEIIHNPTVNKRLEEMA-VQNIPVEEG-KKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKV 133 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L~~~G-v~~v~~~~~-~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~i-vDaTCP~V~kv 133 (237)
.|+++|=----....++|...+ ...+.+..+ ...+.+-. + .+.+.-+|-.....+.+++.++.+ ||||=||-..+
T Consensus 4 ~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~-~-~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~i 81 (257)
T COG2099 4 RILLLGGTSDARALAKKLAAAPVDIILSSLTGYGAKLAEQI-G-PVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARI 81 (257)
T ss_pred eEEEEeccHHHHHHHHHhhccCccEEEEEcccccccchhcc-C-CeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHH
Confidence 4555555555566666666665 333332111 11111111 2 277889999999999999999987 99999998888
Q ss_pred HHHHHHHhh-CCCeEEEEecCCCcceeeeccccCeeEEEcChhhHHhhh
Q 026546 134 WTSVEKHKK-GDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVC 181 (237)
Q Consensus 134 ~~~v~~~~~-~Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~~~e~~~~~ 181 (237)
-+-+-+.++ .|-.-+-+-.+.-... .++.+-|.|.+|+-...
T Consensus 82 S~Na~~aake~gipy~r~eRP~~~~~------gd~~~~V~d~~ea~~~~ 124 (257)
T COG2099 82 SQNAARAAKETGIPYLRLERPPWAPN------GDNWIEVADIEEAAEAA 124 (257)
T ss_pred HHHHHHHHHHhCCcEEEEECCccccC------CCceEEecCHHHHHHHH
Confidence 555555444 4655555544332211 24567778888775543
No 27
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=72.35 E-value=14 Score=34.22 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=57.9
Q ss_pred HHHHHHHhcC----CcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhHH
Q 026546 110 EEMVTLNNKN----VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE 178 (237)
Q Consensus 110 ~v~~~l~~~g----~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~~ 178 (237)
++.+.|+++. ..+.|+-|.-...=|+.+++++++=--+|++|.++-.-+.=+.--| ...+.+++.+|++
T Consensus 171 ~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 171 EIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCC
Confidence 4455677766 7889999999999999999999999999999999998888765433 4578899999985
No 28
>PRK12435 ferrochelatase; Provisional
Probab=72.16 E-value=31 Score=32.12 Aligned_cols=81 Identities=10% Similarity=0.121 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCcccccccccc----CCCEEEEcCCCCCHHHHHHHHh
Q 026546 42 AVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN----KGDVVVLPAFGAAVEEMVTLNN 117 (237)
Q Consensus 42 Av~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~----~g~~VIirAHGv~~~v~~~l~~ 117 (237)
..+.+.++.++.+..++-+...-=-+|.-++.|.+.=-.. ++..+ ++..+||+|||+|....+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~---------l~~~~~~~~~~~~llfSaHslP~~~i~---- 190 (311)
T PRK12435 124 YNKRAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKET---------FAQIPEEEREKAVLIVSAHSLPEKIIA---- 190 (311)
T ss_pred HHHHHHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHH---------HHHcCcccccceEEEEecCCCchhHhh----
Confidence 4444444444333234666666666777777776541111 22121 234799999999998775
Q ss_pred cCCcEEeCcChhhHHHHHHHHHHhh
Q 026546 118 KNVQIVDTTCPWVSKVWTSVEKHKK 142 (237)
Q Consensus 118 ~g~~ivDaTCP~V~kv~~~v~~~~~ 142 (237)
+| .|+-.-+...++...+
T Consensus 191 ~G-------DpY~~q~~~t~~~v~~ 208 (311)
T PRK12435 191 AG-------DPYPDQLEETADLIAE 208 (311)
T ss_pred CC-------CCHHHHHHHHHHHHHH
Confidence 33 4888887777666543
No 29
>PRK09453 phosphodiesterase; Provisional
Probab=72.04 E-value=30 Score=28.77 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhCCCCceEEecccccC------------HHHHHHHHhcC--cEEecCC
Q 026546 41 RAVQIAYEARKQFPEEKIWITNEIIHN------------PTVNKRLEEMA--VQNIPVE 85 (237)
Q Consensus 41 RAv~~a~~a~~~~~~~~vy~lgeiIHN------------~~Vv~~L~~~G--v~~v~~~ 85 (237)
.|.+.+.+.+++.+-..|+.+|+|++- +.+.+.|++.| +..|..+
T Consensus 14 ~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GN 72 (182)
T PRK09453 14 PATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGN 72 (182)
T ss_pred HHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccC
Confidence 345555554443333579999999962 45788888886 5566543
No 30
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=71.50 E-value=7.6 Score=36.08 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=41.5
Q ss_pred CCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 026546 34 GFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 34 GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~ 83 (237)
.|-..|-|+|+.+.++.++.+ .+|.+.|++.+||.....|-.+|+.-+.
T Consensus 228 ~~~Pavl~li~~vi~~a~~~g-~~vsvCGe~a~~p~~~~~Ll~lGi~~lS 276 (293)
T PF02896_consen 228 PLHPAVLRLIKQVIDAAHKAG-KPVSVCGEMASDPEAIPLLLGLGIRSLS 276 (293)
T ss_dssp TTSHHHHHHHHHHHHHHHHTT--EEEEESGGGGSHHHHHHHHHHT-SEEE
T ss_pred cchHHHHHHHHHHHHHHhhcC-cEEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 456789999999988888764 7999999999999999999999998764
No 31
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=70.96 E-value=19 Score=32.69 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=58.7
Q ss_pred CHHHHHHHHhcCcEEecCCccccccccccC--CCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhC
Q 026546 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNK--GDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG 143 (237)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~--g~~VIirAHGv~~~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~~~~~ 143 (237)
=..+.+.|.+.|..++-..-+...-..+.. +..|+.-..+- .+..+.+++.++.+ ||||=||-..+.+.+.+..++
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~-~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~ 90 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDP-QELREFLKRHSIDILVDATHPFAAQITTNATAVCKE 90 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCH-HHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHH
Confidence 345667777777655432111100111222 22354444433 23447777777765 999999999998888776654
Q ss_pred -CCeEEEEecCCCcceeeeccccCeeEEEcChhhHHhh
Q 026546 144 -DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (237)
Q Consensus 144 -Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~~~e~~~~ 180 (237)
|-..+=+-.+ +.. -.+..+.+.|.+++..+
T Consensus 91 ~~ipylR~eR~---~~~----~~~~~~~v~~~~ea~~~ 121 (256)
T TIGR00715 91 LGIPYVRFERP---PLA----LGKNIIEVPDIEEATRV 121 (256)
T ss_pred hCCcEEEEECC---CCC----CCCCeEEeCCHHHHHHH
Confidence 5555555332 210 11345667888776543
No 32
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=69.40 E-value=69 Score=27.13 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=70.1
Q ss_pred ccchhHHHHHHHcCCcceecce-EE-------------EEeCCCCCcccHHHHHHHHHHHHh-----hCCCCceEEeccc
Q 026546 4 EYTSDIIKKLKENGFEYTWGNV-KV-------------KLAESYGFCWGVERAVQIAYEARK-----QFPEEKIWITNEI 64 (237)
Q Consensus 4 ~~~s~~i~~~~~~~~~~~~g~m-~I-------------~lA~~~GFC~GV~RAv~~a~~a~~-----~~~~~~vy~lgei 64 (237)
+...++...+++.|.....=++ ++ .+...-++.|==.+|++...+.++ ...+.++|+.|+
T Consensus 11 ~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~- 89 (249)
T PRK05928 11 PKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWPKNKKYAAIGE- 89 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCCCCCEEEEECH-
Confidence 3456788999999855544322 22 233445666666777777666543 122457999985
Q ss_pred ccCHHHHHHHHhcCcEEe--cCCccc----cccccc-cCC-CEEEEcCCCCCHHHHHHHHhcCCcEE
Q 026546 65 IHNPTVNKRLEEMAVQNI--PVEEGK----KQFDVV-NKG-DVVVLPAFGAAVEEMVTLNNKNVQIV 123 (237)
Q Consensus 65 IHN~~Vv~~L~~~Gv~~v--~~~~~~----~~~~~v-~~g-~~VIirAHGv~~~v~~~l~~~g~~iv 123 (237)
..-+.|++.|+... ++.... ..+... ..| .++++|.-+......+.|+++|..++
T Consensus 90 ----~Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~ 152 (249)
T PRK05928 90 ----KTALALKKLGGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVD 152 (249)
T ss_pred ----HHHHHHHHcCCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEe
Confidence 45588999998643 322111 111111 123 45666777777788899999998763
No 33
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=68.63 E-value=17 Score=34.19 Aligned_cols=94 Identities=20% Similarity=0.192 Sum_probs=54.5
Q ss_pred CCCceEEecccccCHHHHHHHHhcCcEEecCCccc-cc--c------ccc-cC-CCEEE-EcCCCCCHHH---HHHHHhc
Q 026546 54 PEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGK-KQ--F------DVV-NK-GDVVV-LPAFGAAVEE---MVTLNNK 118 (237)
Q Consensus 54 ~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~-~~--~------~~v-~~-g~~VI-irAHGv~~~v---~~~l~~~ 118 (237)
.+++||++|+- -..+.|++.|+.......+. +. . ..+ |+ |++|+ +-.|=-=++. ...|++=
T Consensus 105 ~~k~Vyvig~~----gi~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvvg~D~hfsy~KL~kA~~yLqnP 180 (306)
T KOG2882|consen 105 FGKKVYVIGEE----GIREELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVVGYDEHFSYPKLMKALNYLQNP 180 (306)
T ss_pred CCCeEEEecch----hhhHHHHHcCceeecCCCCcccccccccchhhcCCCCCCCEEEEecccccCHHHHHHHHHHhCCC
Confidence 45789999985 46679999999887653221 11 0 011 11 33332 2222222333 3455667
Q ss_pred CCcEE----eCcCh------------hhHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 026546 119 NVQIV----DTTCP------------WVSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (237)
Q Consensus 119 g~~iv----DaTCP------------~V~kv~~~v~~~~~~Gy~ivIiG~~~HpE 157 (237)
+|..+ |+||| +|..|...+ |.+-+++||++-+=
T Consensus 181 ~clflatn~D~~~p~~~~~~ipG~G~~v~av~~~t------~R~P~v~GKP~~~m 229 (306)
T KOG2882|consen 181 GCLFLATNRDATTPPTPGVEIPGAGSFVAAVKFAT------GRQPIVLGKPSTFM 229 (306)
T ss_pred CcEEEeccCccccCCCCCeeccCCccHHHHHHHHh------cCCCeecCCCCHHH
Confidence 77775 99998 555555333 56678899887543
No 34
>PRK00035 hemH ferrochelatase; Reviewed
Probab=67.55 E-value=60 Score=29.91 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCC-CCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHH
Q 026546 41 RAVQIAYEARKQFP-EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEM 112 (237)
Q Consensus 41 RAv~~a~~a~~~~~-~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~ 112 (237)
...+.+.+++++++ ..++.+..++=.+|..++.+.++=-...+. ...-.+++.|+|++||+|....
T Consensus 138 s~~~~i~~~~~~~~~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~~------~~~~~~~~~llfs~HG~P~~~~ 204 (333)
T PRK00035 138 SYFEDLARALAKLRLQPEIRFIRSYYDHPGYIEALAESIREALAK------HGEDPEPDRLLFSAHGLPQRYI 204 (333)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeCCccCCHHHHHHHHHHHHHHHHh------cCcccCCcEEEEecCCCchHHh
Confidence 33444455555543 235666666667777766665432211111 0000035789999999987753
No 35
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=67.53 E-value=96 Score=28.16 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=29.2
Q ss_pred ccccCCCE-EEEcCCC---CCHHHHHHHHhcCCcEEeCcCh
Q 026546 92 DVVNKGDV-VVLPAFG---AAVEEMVTLNNKNVQIVDTTCP 128 (237)
Q Consensus 92 ~~v~~g~~-VIirAHG---v~~~v~~~l~~~g~~ivDaTCP 128 (237)
.++.++|+ +||+--| +|-++-+.++++|+.||=-|--
T Consensus 100 ~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl 140 (243)
T COG4821 100 LQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSL 140 (243)
T ss_pred hcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehh
Confidence 35667887 5678877 4778999999999999987753
No 36
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=66.15 E-value=49 Score=28.86 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=37.3
Q ss_pred hHHHHHHHcCCcceecce---EEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEe-cccccCHHHHHHHHhcCcEEec
Q 026546 8 DIIKKLKENGFEYTWGNV---KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWIT-NEIIHNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 8 ~~i~~~~~~~~~~~~g~m---~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~l-geiIHN~~Vv~~L~~~Gv~~v~ 83 (237)
+++.+|.+.|..+...+. .+.......+..-+.++.+..+++... ..+.|.. ----.|+.+.+-|++.|..++.
T Consensus 80 ~~ir~i~~~GheIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~~~G~--~~~~~fR~P~G~~~~~~~~~l~~~Gy~~v~ 157 (224)
T TIGR02884 80 DLIKRMVDEGHIVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKKVTGQ--KEMKYFRPPRGVFSERTLAYTKELGYYTVF 157 (224)
T ss_pred HHHHHHHHcCCEeeecCccCcCcccCCHHHHHHHHHHHHHHHHHHhCC--CCCCEEeCCCCCcCHHHHHHHHHcCCcEEe
Confidence 455556655543332221 111123333334444444444443321 1133333 2235799999999999999874
No 37
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=64.91 E-value=25 Score=32.56 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=82.4
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHh--cCcEEecCCccccccccccC-CCEEEEcCCCCCHH--
Q 026546 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE-- 110 (237)
Q Consensus 36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~--~Gv~~v~~~~~~~~~~~v~~-g~~VIirAHGv~~~-- 110 (237)
|.=|.++-.++.+..++ +-.|.+.|+==| |+|..-+-. ....++++. ++++.++. ..+.+++==-.+.+
T Consensus 99 CP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~vv~~~---~d~~~l~~~~kv~~vsQTT~~~~~~ 172 (281)
T PRK12360 99 CPFVKKIQNIVEEYYNK--GYSIIIVGDKNH-PEVIGINGWCDNSAYIVNSI---EEVENIPFLDKACVVAQTTIIPELW 172 (281)
T ss_pred CccchHHHHHHHHHHhC--CCEEEEEcCCCC-ceeeEeccCcCCCeEEECCH---HHHhhCccccCEEEEECCCCcHHHH
Confidence 55555555555555543 234666665333 222221111 012233322 12333332 23344433333433
Q ss_pred --HHHHHHhc--CCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhHH
Q 026546 111 --EMVTLNNK--NVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE 178 (237)
Q Consensus 111 --v~~~l~~~--g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~~ 178 (237)
+.+.|+++ .+.+.|+-|.-...=|+.+++++++=--++++|.++-.-+.=+.--| .+.+.+++++|++
T Consensus 173 ~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PRK12360 173 EDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELD 248 (281)
T ss_pred HHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCC
Confidence 34445444 56669999999999999999999999999999999998888665433 4578899999985
No 38
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=64.75 E-value=15 Score=27.73 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=46.6
Q ss_pred EEEcCCCCCHHHHHHHHhcC--CcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC-eeEEEcChhh
Q 026546 100 VVLPAFGAAVEEMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKE 176 (237)
Q Consensus 100 VIirAHGv~~~v~~~l~~~g--~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e 176 (237)
||+-.--++..+.+.|++.+ +.+||.. ++.++++.++|+. ++.|+..+|++---.+... +.+++....+
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d-------~~~~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDRD-------PERVEELREEGVE-VIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHTTSE-EEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEECC-------cHHHHHHHhcccc-cccccchhhhHHhhcCccccCEEEEccCCH
Confidence 45555556778889999977 3446654 6668888899977 7779999999977766543 3445443333
Q ss_pred H
Q 026546 177 A 177 (237)
Q Consensus 177 ~ 177 (237)
.
T Consensus 74 ~ 74 (116)
T PF02254_consen 74 E 74 (116)
T ss_dssp H
T ss_pred H
Confidence 3
No 39
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=63.86 E-value=67 Score=26.50 Aligned_cols=30 Identities=13% Similarity=0.343 Sum_probs=21.2
Q ss_pred ccCCCE-EEEcCCCCCHHHHHH---HHhcCCcEE
Q 026546 94 VNKGDV-VVLPAFGAAVEEMVT---LNNKNVQIV 123 (237)
Q Consensus 94 v~~g~~-VIirAHGv~~~v~~~---l~~~g~~iv 123 (237)
+.++|. |+|+-.|-++++.+. ++++|++||
T Consensus 70 ~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii 103 (179)
T TIGR03127 70 IKKGDLLIAISGSGETESLVTVAKKAKEIGATVA 103 (179)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEE
Confidence 445666 568888999987665 566777665
No 40
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=63.18 E-value=19 Score=34.07 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=49.9
Q ss_pred hhHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCC-CceEEecccccCHHHHHHHHhcCcEEecCC
Q 026546 7 SDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPE-EKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85 (237)
Q Consensus 7 s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~-~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~ 85 (237)
.+.+++|+++|..-.. -+-| -|.-=|+-+--+++-+.+++++.+. .++-+...-=-+|--++.|.+. |.+
T Consensus 105 ~~~v~~l~~~gv~~iv---~~pL-yPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~----I~~- 175 (320)
T COG0276 105 EEAVEELKKDGVERIV---VLPL-YPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADS----IRE- 175 (320)
T ss_pred HHHHHHHHHcCCCeEE---EEEC-CcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHH----HHH-
Confidence 4455666666542111 1122 3444466777777777666654322 2344444444455555544322 111
Q ss_pred cccccccccc-CCCEEEEcCCCCCHHHHHH
Q 026546 86 EGKKQFDVVN-KGDVVVLPAFGAAVEEMVT 114 (237)
Q Consensus 86 ~~~~~~~~v~-~g~~VIirAHGv~~~v~~~ 114 (237)
.+.+.+ +++.+||+|||+|....++
T Consensus 176 ----~~~~~~~~~~~llfSaHglP~~~~~~ 201 (320)
T COG0276 176 ----KLAKHPRDDDVLLFSAHGLPKRYIDE 201 (320)
T ss_pred ----HHHhcCCCCeEEEEecCCCchhhhhc
Confidence 122222 4678999999999866543
No 41
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=62.24 E-value=12 Score=27.35 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=33.4
Q ss_pred EEEEcCCC-------CCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCe-EEEEecC
Q 026546 99 VVVLPAFG-------AAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKY 153 (237)
Q Consensus 99 ~VIirAHG-------v~~~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~~~~~Gy~-ivIiG~~ 153 (237)
++|+|.+. ..-++...|++.|+.+ +|-.- .++-+..+...+.|+. ++|+|+.
T Consensus 4 v~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~---~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 4 VVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRN---ERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCC---CCcccchhHHHhcCCCEEEEECCc
Confidence 46666554 2334566777788888 66542 4666666777788887 6677744
No 42
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=61.43 E-value=12 Score=36.67 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=60.3
Q ss_pred cccCHHH----HHHHHhcCcEEecCCccccccccccCCCEEEEcC---------------------CCCCHHHHHHHHhc
Q 026546 64 IIHNPTV----NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA---------------------FGAAVEEMVTLNNK 118 (237)
Q Consensus 64 iIHN~~V----v~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA---------------------HGv~~~v~~~l~~~ 118 (237)
.|=||++ ++.|+++|+..+.+. --|.+...||++- -|+.|.-.++..++
T Consensus 72 vVvdP~~L~~Ei~~L~~~g~~~~~~r------L~Is~~ahlIlpyH~~lD~~~E~~~~~~kIGTTgrGIGPaY~DKv~R~ 145 (430)
T COG0104 72 VVVDPEVLLKEIEELEERGVDVVRDR------LRISDRAHLILPYHIELDRAREKALGKKKIGTTGRGIGPAYEDKVARR 145 (430)
T ss_pred EEECHHHHHHHHHHHHhcCCcccccc------EEEccCcccccHHHHHHhhhhhhhcCCCcccCCCCccChhhhhhHhhh
Confidence 3445654 688899999866421 0122233344443 48899999999999
Q ss_pred CCcEEeCcC---------------------------------------------hhhHHHHHHHHHHhhCCCeEEEEe
Q 026546 119 NVQIVDTTC---------------------------------------------PWVSKVWTSVEKHKKGDYTSIIHG 151 (237)
Q Consensus 119 g~~ivDaTC---------------------------------------------P~V~kv~~~v~~~~~~Gy~ivIiG 151 (237)
|+++-|--= |++.-++....+..++|.+|++=|
T Consensus 146 giRv~DL~d~~~l~~kle~~~~~~n~~l~~~y~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~a~~~g~~VLfEG 223 (430)
T COG0104 146 GIRVGDLLDPETLREKLERLLEYKNFQLVKYYGAEAVDFEDILDEYYEYAERLKPYVTDVSVLLNDALDAGKRVLFEG 223 (430)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHcCCeEEEEc
Confidence 999977654 999999999999999999999877
No 43
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=61.24 E-value=54 Score=31.06 Aligned_cols=112 Identities=5% Similarity=-0.014 Sum_probs=70.8
Q ss_pred CCcccHHHHHHHHHHHHhh--------CCCCceEEecccccCHHHHHHHHhcCcEEecCCc--ccccccc-ccCCCEEEE
Q 026546 34 GFCWGVERAVQIAYEARKQ--------FPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE--GKKQFDV-VNKGDVVVL 102 (237)
Q Consensus 34 GFC~GV~RAv~~a~~a~~~--------~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~--~~~~~~~-v~~g~~VIi 102 (237)
.| .|.+.++++.++.+++ ..+.+|.++|...-|+.+.+-+++.|..+|-+.. +...+.. +++
T Consensus 201 ~~-~~~~~~~~~l~~l~~el~~~~~~~~~~~ril~tG~~~~~~~i~~~iE~~G~~VV~~e~c~g~r~~~~~v~~------ 273 (377)
T TIGR03190 201 QF-IDKREHNEMLKKVLAALPSRKVERKTGARFMTIGSENDDIAFMAMVESVGATIVIDDQCSGTRYFWNASKP------ 273 (377)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCcHHHHHHHHHCCCEEEEECCCcccccccccCCC------
Confidence 35 7999999887654431 1123688899998888899999999999885421 1111111 111
Q ss_pred cCCCCCHHHHHHHHhcCCcEEeCcCh------hhHHHHHHHHHHhhCCCeEEEEecCC-Cccee
Q 026546 103 PAFGAAVEEMVTLNNKNVQIVDTTCP------WVSKVWTSVEKHKKGDYTSIIHGKYS-HEETV 159 (237)
Q Consensus 103 rAHGv~~~v~~~l~~~g~~ivDaTCP------~V~kv~~~v~~~~~~Gy~ivIiG~~~-HpEv~ 159 (237)
+.+.++.+.++=+..+-++|. ....+.+.++++.-+| ||.+..+. ||...
T Consensus 274 -----~~dpl~alA~~yl~~~~C~~~~~p~~~R~~~i~~lv~~~~~DG--VI~~~~kfC~~~~~ 330 (377)
T TIGR03190 274 -----EDDVIKAIAERYCDRPACPTKDYPVHTRYDHVLGLAKEYNVQG--AIFLQQKFCDPHEG 330 (377)
T ss_pred -----CccHHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHHHHHhCCCE--EEEecccCCCcchh
Confidence 123466666666766667773 2555666777777777 77777665 55433
No 44
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=61.13 E-value=18 Score=28.49 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=49.9
Q ss_pred eEEecccccCHHHHHHHHhcC--cEEecCCccccccccccCCCEEEEcCCC-CCHHHHHHHHhcCCcEEeCcChhhHHHH
Q 026546 58 IWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVNKGDVVVLPAFG-AAVEEMVTLNNKNVQIVDTTCPWVSKVW 134 (237)
Q Consensus 58 vy~lgeiIHN~~Vv~~L~~~G--v~~v~~~~~~~~~~~v~~g~~VIirAHG-v~~~v~~~l~~~g~~ivDaTCP~V~kv~ 134 (237)
|.++++| ++...+.|++ | +.+.+..+..+-...+++=|.+|.+... +++++++.+ .++++|=+.+-=+-++
T Consensus 1 ili~~~~--~~~~~~~l~~-~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~--~~Lk~I~~~~~G~d~i- 74 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEE-GFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA--PNLKLISTAGAGVDNI- 74 (133)
T ss_dssp EEESSS---SHHHHHHHHH-TSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH--TT-SEEEESSSSCTTB-
T ss_pred eEEeccC--CHHHHHHHHC-CceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc--ceeEEEEEcccccCcc-
Confidence 5667777 8899999999 5 4444422111111223333566666666 899999888 7888886666545443
Q ss_pred HHHHHHhhCCCeEEE
Q 026546 135 TSVEKHKKGDYTSII 149 (237)
Q Consensus 135 ~~v~~~~~~Gy~ivI 149 (237)
-.....+.|-.+.-
T Consensus 75 -d~~~a~~~gI~V~n 88 (133)
T PF00389_consen 75 -DLEAAKERGIPVTN 88 (133)
T ss_dssp --HHHHHHTTSEEEE
T ss_pred -cHHHHhhCeEEEEE
Confidence 23445566655443
No 45
>PLN02449 ferrochelatase
Probab=59.68 E-value=72 Score=31.92 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCCHHHHH
Q 026546 96 KGDVVVLPAFGAAVEEMV 113 (237)
Q Consensus 96 ~g~~VIirAHGv~~~v~~ 113 (237)
++..++|+|||+|....+
T Consensus 275 ~~~~LlFSAHGlP~~~v~ 292 (485)
T PLN02449 275 EEVHIFFSAHGVPVSYVE 292 (485)
T ss_pred CCcEEEEecCCChhhhhh
Confidence 457899999999988764
No 46
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=59.04 E-value=11 Score=27.25 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=29.7
Q ss_pred EcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCe
Q 026546 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146 (237)
Q Consensus 102 irAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ 146 (237)
+..||.||.+.+-++.-|+. -...||...+.|.++||-
T Consensus 19 ~~~~G~~Pt~rEIa~~~g~~-------S~~tv~~~L~~Le~kG~I 56 (65)
T PF01726_consen 19 IEENGYPPTVREIAEALGLK-------STSTVQRHLKALERKGYI 56 (65)
T ss_dssp HHHHSS---HHHHHHHHTSS-------SHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHHHHhCCC-------ChHHHHHHHHHHHHCcCc
Confidence 34589999999999998874 358899999999999994
No 47
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=58.82 E-value=36 Score=31.72 Aligned_cols=111 Identities=14% Similarity=0.183 Sum_probs=64.3
Q ss_pred hhHHHHHHHcCCcceecceEEEEe--CCCCCcccHHHHHHHHHHHHhhC-CCCceEEecccccCHHHHHHHHhcCcEEec
Q 026546 7 SDIIKKLKENGFEYTWGNVKVKLA--ESYGFCWGVERAVQIAYEARKQF-PEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 7 s~~i~~~~~~~~~~~~g~m~I~lA--~~~GFC~GV~RAv~~a~~a~~~~-~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~ 83 (237)
.+.+++|++.|+. +|++- -|.-=+..+.-+++.+.+++++. +..++-+..+---+|.-++.+.++=-..++
T Consensus 103 ~~~l~~l~~~g~~------~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~l~ 176 (316)
T PF00762_consen 103 EDALEELKADGVD------RIVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREALE 176 (316)
T ss_dssp HHHHHHHHHTT-S------EEEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCC------eEEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 4456666665432 33332 34444567778888888887763 234688888888889888888765333332
Q ss_pred CCccccccccc--cCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhh
Q 026546 84 VEEGKKQFDVV--NKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142 (237)
Q Consensus 84 ~~~~~~~~~~v--~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~ 142 (237)
.. ++++.+||+|||+|....+ ++| .|+..-++..++..++
T Consensus 177 ---------~~~~~~~~~llfSaHglP~~~~~---~~G-------dpY~~~~~~t~~~i~~ 218 (316)
T PF00762_consen 177 ---------RFPRGEPDHLLFSAHGLPQRYVE---DKG-------DPYPAQCEETARLIAE 218 (316)
T ss_dssp ---------TS-HCCCEEEEEEEE--BHHHHT---CCT--------SHHHHHHHHHHHHHH
T ss_pred ---------hcCCCCCCEEEEccCCCCccccc---cCC-------CChHHHHHHHHHHHHH
Confidence 22 2357899999999987762 222 3777777777766544
No 48
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=57.52 E-value=15 Score=29.61 Aligned_cols=30 Identities=17% Similarity=0.469 Sum_probs=19.8
Q ss_pred ccCCCE-EEEcCCCCCHHHH---HHHHhcCCcEE
Q 026546 94 VNKGDV-VVLPAFGAAVEEM---VTLNNKNVQIV 123 (237)
Q Consensus 94 v~~g~~-VIirAHGv~~~v~---~~l~~~g~~iv 123 (237)
+.+||+ |+|++.|-+|.+. +.++++|+.+|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vI 134 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVI 134 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Confidence 567887 5699999999876 45677888876
No 49
>PF15498 Dendrin: Nephrin and CD2AP-binding protein, Dendrin
Probab=57.42 E-value=2.2 Score=42.31 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=26.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcChh
Q 026546 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 99 ~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
..-=|||=++..-.--+..-|+.||||||-.
T Consensus 378 K~trRaHTlPRssrgpa~geGvFVIDATCVV 408 (657)
T PF15498_consen 378 KETRRAHTLPRSSRGPARGEGVFVIDATCVV 408 (657)
T ss_pred ccccccccCCcccCCCCCCCceEEEeeeEEE
Confidence 4567999999888888889999999999954
No 50
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=57.37 E-value=25 Score=32.50 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=27.7
Q ss_pred ccCCCEE-EEcCCCCCHHHH---HHHHhcCCcEEeCcChhh
Q 026546 94 VNKGDVV-VLPAFGAAVEEM---VTLNNKNVQIVDTTCPWV 130 (237)
Q Consensus 94 v~~g~~V-IirAHGv~~~v~---~~l~~~g~~ivDaTCP~V 130 (237)
+.++|+| +|++-|-+|.+. +.++++|..+|=-||.--
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~ 164 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPK 164 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4567765 699999999774 566788999988888433
No 51
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=57.11 E-value=29 Score=30.36 Aligned_cols=72 Identities=21% Similarity=0.429 Sum_probs=41.9
Q ss_pred cchhHHHHHHH-cCCcceecceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEe
Q 026546 5 YTSDIIKKLKE-NGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82 (237)
Q Consensus 5 ~~s~~i~~~~~-~~~~~~~g~m~I~lA~~~GF-C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v 82 (237)
.++.|++.-+. .|.++.||+. .+.|| |.|.-+ .+++.. ++ |.-|.--......|-. +
T Consensus 66 ~~~~il~~a~~~~G~pY~~GG~-----s~~G~DCSGfv~---~vy~~~--~G----------i~LPr~t~~Q~~~g~~-V 124 (190)
T PRK10838 66 VKSRIMDQYADWKGVRYRLGGS-----TKKGIDCSAFVQ---RTFREQ--FG----------LELPRSTYEQQEMGKS-V 124 (190)
T ss_pred HHHHHHHHHHHHCCCCccCCCC-----CCCCeEcHHHHH---HHHHHh--CC----------CCCCCCHHHHHhcCcC-c
Confidence 35666665544 4789999984 46799 999855 444321 21 1112222233445532 2
Q ss_pred cCCccccccccccCCCEEEEcC
Q 026546 83 PVEEGKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 83 ~~~~~~~~~~~v~~g~~VIirA 104 (237)
+ .+++.+||.|+|+.
T Consensus 125 ~-------~~~lqpGDLVfF~~ 139 (190)
T PRK10838 125 S-------RSKLRTGDLVLFRA 139 (190)
T ss_pred c-------cCCCCCCcEEEECC
Confidence 2 36677899999975
No 52
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=56.88 E-value=10 Score=25.84 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=20.8
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCC
Q 026546 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF 105 (237)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAH 105 (237)
.++.|+++|+.|+.. ++|..++.|+|
T Consensus 20 Q~~~L~~~Gi~~~~~----------~~G~p~V~r~~ 45 (47)
T PF13986_consen 20 QIRWLRRNGIPFVVR----------ADGRPIVTRSH 45 (47)
T ss_pred HHHHHHHCCCeeEEC----------CCCCEEeeHHH
Confidence 458899999999975 45778888876
No 53
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=56.70 E-value=17 Score=29.70 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=22.5
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHh
Q 026546 96 KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHK 141 (237)
Q Consensus 96 ~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~ 141 (237)
+.+.+||+|||+|....+ +| -|+..-+...++...
T Consensus 17 ~~~~llfsaHgiP~~~~~----~g-------d~Y~~~~~~~~~~v~ 51 (135)
T cd00419 17 EKDRLLFSAHGLPVRDIK----KG-------DPYPDQCEETARLVA 51 (135)
T ss_pred CCCEEEEEcCCCHHHHhh----CC-------CCHHHHHHHHHHHHH
Confidence 457799999999977654 22 355555555554443
No 54
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=56.64 E-value=54 Score=25.52 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=57.1
Q ss_pred HHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCcccccccc------c------cCCCEEEEcCCCCCHH
Q 026546 43 VQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV------V------NKGDVVVLPAFGAAVE 110 (237)
Q Consensus 43 v~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~------v------~~g~~VIirAHGv~~~ 110 (237)
++.+.+..+ .+ ..|+.+|.|+....+.+.|++..+.++...-+...+.+ + .-+..-++=.||-+..
T Consensus 16 ~~~~~~~~~-~~-d~vi~~GDi~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~i~~~H~~~~~ 93 (156)
T PF12850_consen 16 LEAVLEYIN-EP-DFVIILGDIFDPEEVLELLRDIPVYVVRGNHDNWAFPNENDEEYLLDALRLTIDGFKILLSHGHPYD 93 (156)
T ss_dssp HHHHHHHHT-TE-SEEEEES-SCSHHHHHHHHHHHEEEEE--CCHSTHHHSEECTCSSHSEEEEEETTEEEEEESSTSSS
T ss_pred HHHHHHHhc-CC-CEEEECCCchhHHHHHHHHhcCCEEEEeCCcccccchhhhhccccccceeeeecCCeEEEECCCCcc
Confidence 334433333 24 47999999999999999998888888865332111111 0 0023344555654333
Q ss_pred HHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceee
Q 026546 111 EMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA 160 (237)
Q Consensus 111 v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g 160 (237)
+. .......+.+...++..++.|+...|.+.-
T Consensus 94 -----------------~~-~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 125 (156)
T PF12850_consen 94 -----------------VQ-WDPAELREILSRENVDLVLHGHTHRPQVFK 125 (156)
T ss_dssp -----------------ST-TTHHHHHHHHHHTTSSEEEESSSSSEEEEE
T ss_pred -----------------cc-cChhhhhhhhcccCCCEEEcCCcccceEEE
Confidence 10 111223356778999999999999998854
No 55
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=54.14 E-value=46 Score=29.32 Aligned_cols=103 Identities=8% Similarity=-0.052 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhCC-CCc--eEEecccccCHHHHHHHHhcCcEEecCCc-c---ccccccccCCCEEEEcCCCCCHHHHH
Q 026546 41 RAVQIAYEARKQFP-EEK--IWITNEIIHNPTVNKRLEEMAVQNIPVEE-G---KKQFDVVNKGDVVVLPAFGAAVEEMV 113 (237)
Q Consensus 41 RAv~~a~~a~~~~~-~~~--vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~-~---~~~~~~v~~g~~VIirAHGv~~~v~~ 113 (237)
..++.....++..+ +-+ |=.+|+=-.++.+.+-|++.|+..+-... . .........++.+.+|-||-+....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~avE~R~~sW~~~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~- 180 (230)
T PF01904_consen 102 ENLERLDAFLDRLPRGFRYAVEFRHPSWFTEEVFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGW- 180 (230)
T ss_dssp HHHHHHHHHHHHTT-TS-EEEE--BGGGGCHHHHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTT-
T ss_pred HHHHHHHHHHhhcccccceEEecCCcchhhHHHHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCccccc-
Confidence 33444555555554 223 33556544589999999999999874311 1 0011111124889999999986511
Q ss_pred HHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEe
Q 026546 114 TLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (237)
Q Consensus 114 ~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG 151 (237)
.-.+=+=+--...-+.++++.++|.+|.++=
T Consensus 181 -------~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~f 211 (230)
T PF01904_consen 181 -------YDYRYSDEELEEWAERIRAWAAQGKEVYVFF 211 (230)
T ss_dssp -------TB----HHHHHHHHHHHHHHHTCSSEEEEEE
T ss_pred -------ccccCCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 0000000223455566777777886665543
No 56
>PRK10444 UMP phosphatase; Provisional
Probab=54.08 E-value=1e+02 Score=27.47 Aligned_cols=106 Identities=13% Similarity=0.137 Sum_probs=56.6
Q ss_pred hhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCC-CCHHHHHHHH---hcCCcEE---
Q 026546 51 KQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG-AAVEEMVTLN---NKNVQIV--- 123 (237)
Q Consensus 51 ~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHG-v~~~v~~~l~---~~g~~iv--- 123 (237)
++.+++++|++|+ +...+.|++.|+...+. +.+.|++..+. .+-+.+.++. ++|...|
T Consensus 78 ~~~~~~~v~~~g~----~~l~~~l~~~g~~~~~~-----------~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~~~i~~n 142 (248)
T PRK10444 78 RRQEGKKAYVIGE----GALIHELYKAGFTITDI-----------NPDFVIVGETRSYNWDMMHKAAYFVANGARFIATN 142 (248)
T ss_pred HhCCCCEEEEEcC----HHHHHHHHHCcCEecCC-----------CCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEEC
Confidence 3333457999998 78899999999875531 22456665543 2333333332 5687775
Q ss_pred -eCcChhh----HHHHHHHHHHhhCCCeEEEEecCCCcceeee----ccc-cCeeEEEcCh
Q 026546 124 -DTTCPWV----SKVWTSVEKHKKGDYTSIIHGKYSHEETVAT----ASF-AGKYIIVKNM 174 (237)
Q Consensus 124 -DaTCP~V----~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~----~g~-a~~~~vv~~~ 174 (237)
|.+||-. -.+-...+.. -|-+.+++||+ ||+..-. .+. ..+.++|.|-
T Consensus 143 ~D~~~~g~~~~~G~~~~~l~~~--~g~~~~~~gKP-~~~~~~~~~~~~~~~~~~~v~IGD~ 200 (248)
T PRK10444 143 PDTHGRGFYPACGALCAGIEKI--SGRKPFYVGKP-SPWIIRAALNKMQAHSEETVIVGDN 200 (248)
T ss_pred CCCCCCCCcCcHHHHHHHHHHH--hCCCccccCCC-CHHHHHHHHHHcCCCcccEEEECCC
Confidence 4444521 1111222221 35556778866 6654322 122 2356677544
No 57
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=52.90 E-value=46 Score=28.67 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=24.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecC
Q 026546 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (237)
Q Consensus 100 VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~ 153 (237)
=|++||=+|....+.+ +...++|+.+||-|--
T Consensus 35 ~VvSAHRTPe~m~~ya----------------------~~a~~~g~~viIAgAG 66 (162)
T COG0041 35 RVVSAHRTPEKMFEYA----------------------EEAEERGVKVIIAGAG 66 (162)
T ss_pred EEEeccCCHHHHHHHH----------------------HHHHHCCCeEEEecCc
Confidence 5799999987776655 5577889998888743
No 58
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=52.74 E-value=1.3e+02 Score=24.84 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=21.6
Q ss_pred ccCCCE-EEEcCCCCCHHHHHH---HHhcCCcEEeCcC
Q 026546 94 VNKGDV-VVLPAFGAAVEEMVT---LNNKNVQIVDTTC 127 (237)
Q Consensus 94 v~~g~~-VIirAHGv~~~v~~~---l~~~g~~ivDaTC 127 (237)
+.++|. ++|+.-|-++++.+. ++++|+++|=-|+
T Consensus 73 ~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~ 110 (179)
T cd05005 73 IGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITS 110 (179)
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence 345666 568889999887654 4555655554444
No 59
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=52.60 E-value=16 Score=30.46 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=49.3
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhc-CCcEEeCcChhhHHHHHHHHHHhhC-CCeEEEEecCCCcceeeeccc
Q 026546 94 VNKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWVSKVWTSVEKHKKG-DYTSIIHGKYSHEETVATASF 164 (237)
Q Consensus 94 v~~g~~VIirAHGv~~~v~~~l~~~-g~~ivDaTCP~V~kv~~~v~~~~~~-Gy~ivIiG~~~HpEv~g~~g~ 164 (237)
+++|++|+|-+-=....+.+.|.++ ++.|| |.. -..+..+.+. +.++++.|=.-+|+..++.|.
T Consensus 17 I~~~~~Ifld~GtT~~~la~~L~~~~~ltVv-Tns------l~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~ 82 (161)
T PF00455_consen 17 IEDGDTIFLDSGTTTLELAKYLPDKKNLTVV-TNS------LPIANELSENPNIEVILLGGEVNPKSLSFVGP 82 (161)
T ss_pred CCCCCEEEEECchHHHHHHHHhhcCCceEEE-ECC------HHHHHHHHhcCceEEEEeCCEEEcCCCcEECc
Confidence 4579989888887888888888888 88888 333 3444555554 899999998888888888774
No 60
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=52.47 E-value=33 Score=27.01 Aligned_cols=56 Identities=11% Similarity=0.149 Sum_probs=35.1
Q ss_pred eEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhH
Q 026546 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (237)
Q Consensus 58 vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~ 131 (237)
+.+.-+--|-+.+++++.++|++.+ +|-+....++..+.+++.|++++---|..|.
T Consensus 59 avv~~~~~~~~~~v~~~~~~g~~~v------------------~~~~g~~~~~~~~~a~~~gi~vigp~C~gv~ 114 (116)
T PF13380_consen 59 AVVCVPPDKVPEIVDEAAALGVKAV------------------WLQPGAESEELIEAAREAGIRVIGPNCLGVV 114 (116)
T ss_dssp EEE-S-HHHHHHHHHHHHHHT-SEE------------------EE-TTS--HHHHHHHHHTT-EEEESS-HHHH
T ss_pred EEEEcCHHHHHHHHHHHHHcCCCEE------------------EEEcchHHHHHHHHHHHcCCEEEeCCcceEE
Confidence 5555556677777777777775432 3333378899999999999999998998764
No 61
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=52.00 E-value=19 Score=31.92 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=28.3
Q ss_pred EEeCcChhhHHHHHHHHHHhhCCCeEEEEecC
Q 026546 122 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (237)
Q Consensus 122 ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~ 153 (237)
..|-.|||=+|.|+.+.++.+.|+++.++-=+
T Consensus 114 FtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P 145 (232)
T PRK10877 114 FTDITCGYCHKLHEQMKDYNALGITVRYLAFP 145 (232)
T ss_pred EECCCChHHHHHHHHHHHHhcCCeEEEEEecc
Confidence 48999999999999999999999999886443
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=51.89 E-value=95 Score=24.58 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=48.2
Q ss_pred ceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEE----eCcChhhHH
Q 026546 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIV----DTTCPWVSK 132 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~iv----DaTCP~V~k 132 (237)
.+++.|.| +|.-++.|++.|++.|=+ -=|++.. +..+-+.++.+.+++.|+..+ +..=+--..
T Consensus 8 ~~~vs~Q~--~~~d~~~la~~GfktVIn--------lRpd~E~---~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~ 74 (110)
T PF04273_consen 8 DLSVSGQP--SPEDLAQLAAQGFKTVIN--------LRPDGEE---PGQPSSAEEAAAAEALGLQYVHIPVDGGAITEED 74 (110)
T ss_dssp TEEEECS----HHHHHHHHHCT--EEEE---------S-TTST---TT-T-HHCHHHHHHHCT-EEEE----TTT--HHH
T ss_pred CeEECCCC--CHHHHHHHHHCCCcEEEE--------CCCCCCC---CCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHH
Confidence 58888887 899999999999998732 1122220 122334457788999999984 434455566
Q ss_pred HHHHHHHHhhCCCeEEEEec
Q 026546 133 VWTSVEKHKKGDYTSIIHGK 152 (237)
Q Consensus 133 v~~~v~~~~~~Gy~ivIiG~ 152 (237)
|....+-+......|++|=+
T Consensus 75 v~~f~~~l~~~~~Pvl~hC~ 94 (110)
T PF04273_consen 75 VEAFADALESLPKPVLAHCR 94 (110)
T ss_dssp HHHHHHHHHTTTTSEEEE-S
T ss_pred HHHHHHHHHhCCCCEEEECC
Confidence 66666667766777877644
No 63
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=51.16 E-value=28 Score=29.57 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCCCCceEEeccc-ccCHHHHHHHHhcCcE--EecCCccccccc-cccCCCEEEEcCCCCCHHHHHHHHhc
Q 026546 43 VQIAYEARKQFPEEKIWITNEI-IHNPTVNKRLEEMAVQ--NIPVEEGKKQFD-VVNKGDVVVLPAFGAAVEEMVTLNNK 118 (237)
Q Consensus 43 v~~a~~a~~~~~~~~vy~lgei-IHN~~Vv~~L~~~Gv~--~v~~~~~~~~~~-~v~~g~~VIirAHGv~~~v~~~l~~~ 118 (237)
++++++......+++|.+.|-= +=-.-+...|.++|+. ++... .+++. .+.+-| |||+|-|.+.-+....-+.
T Consensus 32 v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~--~~~l~~~l~~aD-iVIsat~~~~ii~~~~~~~ 108 (168)
T cd01080 32 LELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK--TKNLKEHTKQAD-IVIVAVGKPGLVKGDMVKP 108 (168)
T ss_pred HHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC--chhHHHHHhhCC-EEEEcCCCCceecHHHccC
Confidence 3444443322345678887751 0012266778888854 23221 11222 233334 8889988876444444466
Q ss_pred CCcEEeCcChhh
Q 026546 119 NVQIVDTTCPWV 130 (237)
Q Consensus 119 g~~ivDaTCP~V 130 (237)
+..+||...|..
T Consensus 109 ~~viIDla~prd 120 (168)
T cd01080 109 GAVVIDVGINRV 120 (168)
T ss_pred CeEEEEccCCCc
Confidence 888899888874
No 64
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=50.57 E-value=32 Score=30.73 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=46.0
Q ss_pred EEcCCCCCH--------HHHHHHHhcCCcEEeCcChh--------------hHHHHHHHHHHhhCCCeEEEEecCCCcce
Q 026546 101 VLPAFGAAV--------EEMVTLNNKNVQIVDTTCPW--------------VSKVWTSVEKHKKGDYTSIIHGKYSHEET 158 (237)
Q Consensus 101 IirAHGv~~--------~v~~~l~~~g~~ivDaTCP~--------------V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv 158 (237)
+||-|.|+| ++.+.|.+.|+...=+.=|. -.+.++..+.+..+|+.|++|| +.|.-.
T Consensus 3 lirleDVsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHG-YtHq~~ 81 (243)
T PF10096_consen 3 LIRLEDVSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHG-YTHQYG 81 (243)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEe-cceecC
Confidence 577777777 66667777887763333332 4678888999999999999999 788875
Q ss_pred eeeccc
Q 026546 159 VATASF 164 (237)
Q Consensus 159 ~g~~g~ 164 (237)
-+..|.
T Consensus 82 ~~~sg~ 87 (243)
T PF10096_consen 82 NSVSGD 87 (243)
T ss_pred CCcccc
Confidence 555543
No 65
>COG1494 GlpX Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]
Probab=50.55 E-value=10 Score=35.69 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=32.4
Q ss_pred CHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHH
Q 026546 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEM 112 (237)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~ 112 (237)
+++...++++||+. ++ ..-.++++-.||-|||.|-||++-.+
T Consensus 248 ~~~e~~R~~~mGid-~~---~vl~ledlv~gd~viFaATGvT~G~l 289 (332)
T COG1494 248 GEEERARCKAMGID-VN---KVLSLEDLVRGDNVIFAATGVTDGDL 289 (332)
T ss_pred cHHHHHHHHHhCCC-hh---heeeHHHhcCCCceEEEeccCcCcch
Confidence 78889999999992 22 22356777788889999999987643
No 66
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=50.51 E-value=1.3e+02 Score=24.78 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=16.8
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH
Q 026546 94 VNKGDV-VVLPAFGAAVEEMVTL 115 (237)
Q Consensus 94 v~~g~~-VIirAHGv~~~v~~~l 115 (237)
+.++|. |+|+.-|-++++.+.+
T Consensus 99 ~~~~Dv~I~iS~SG~t~~~i~~~ 121 (177)
T cd05006 99 GQPGDVLIGISTSGNSPNVLKAL 121 (177)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHH
Confidence 466787 5688889999887665
No 67
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=48.34 E-value=53 Score=28.08 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=30.8
Q ss_pred hcCCcEEeCcChhhHH--HHHHHHHHhhCCCeEEEE-ecCCCcceee
Q 026546 117 NKNVQIVDTTCPWVSK--VWTSVEKHKKGDYTSIIH-GKYSHEETVA 160 (237)
Q Consensus 117 ~~g~~ivDaTCP~V~k--v~~~v~~~~~~Gy~ivIi-G~~~HpEv~g 160 (237)
..++-++++.+||+.. +.+.++.+.+.+..+++. |.++||=..+
T Consensus 88 ~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~g~Pv~~~ 134 (233)
T cd02518 88 ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLPRTYPDGLD 134 (233)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecCCCCCCCCceE
Confidence 3467889999999874 456666666666666664 4578887444
No 68
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=48.31 E-value=1.9e+02 Score=25.91 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec--CCcc-cccccc----cc--CCCEEEEcCCCCCH
Q 026546 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEG-KKQFDV----VN--KGDVVVLPAFGAAV 109 (237)
Q Consensus 39 V~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~--~~~~-~~~~~~----v~--~g~~VIirAHGv~~ 109 (237)
|-|.+.+|++..+.. .+-+|+.-+ +.....+.|++.|..+.. +..+ .++.++ +. ..|.||+-..+++.
T Consensus 17 v~Rcl~LA~~l~~~g-~~v~f~~~~--~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~ 93 (279)
T TIGR03590 17 VMRCLTLARALHAQG-AEVAFACKP--LPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDA 93 (279)
T ss_pred HHHHHHHHHHHHHCC-CEEEEEeCC--CCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCH
Confidence 789999999886543 234555443 455567899999987642 2110 011111 11 24788888889999
Q ss_pred HHHHHHHhcCCcE--EeCc
Q 026546 110 EEMVTLNNKNVQI--VDTT 126 (237)
Q Consensus 110 ~v~~~l~~~g~~i--vDaT 126 (237)
+..+.++.++.++ ||=.
T Consensus 94 ~~~~~~k~~~~~l~~iDD~ 112 (279)
T TIGR03590 94 DWEKLIKEFGRKILVIDDL 112 (279)
T ss_pred HHHHHHHHhCCeEEEEecC
Confidence 9999998888664 6644
No 69
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=47.88 E-value=1.9e+02 Score=25.15 Aligned_cols=95 Identities=11% Similarity=0.132 Sum_probs=53.0
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcC----cEEecCCcccccccc-ccCCCE
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA----VQNIPVEEGKKQFDV-VNKGDV 99 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~G----v~~v~~~~~~~~~~~-v~~g~~ 99 (237)
..++-+....-.-|++..++.+.+..++.++-.+.+.|.=-+-+.+.+.+++.| |.+....+ ++.+ +..-|.
T Consensus 189 ~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~---~~~~~~~~ad~ 265 (360)
T cd04951 189 FVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRD---DIAAYYNAADL 265 (360)
T ss_pred EEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccc---cHHHHHHhhce
Confidence 345555555667899999998887776655446667776444455555555544 44543211 1111 223566
Q ss_pred EEEcCC--CCCHHHHHHHHhcCCcEE
Q 026546 100 VVLPAF--GAAVEEMVTLNNKNVQIV 123 (237)
Q Consensus 100 VIirAH--Gv~~~v~~~l~~~g~~iv 123 (237)
++++++ |.+-...+.+ ..|+.+|
T Consensus 266 ~v~~s~~e~~~~~~~Ea~-a~G~PvI 290 (360)
T cd04951 266 FVLSSAWEGFGLVVAEAM-ACELPVV 290 (360)
T ss_pred EEecccccCCChHHHHHH-HcCCCEE
Confidence 777776 4444444443 4455554
No 70
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=47.84 E-value=43 Score=30.97 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=36.4
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEE
Q 026546 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (237)
Q Consensus 97 g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIi 150 (237)
+-.+|.-++|.|.+..+++++.|+.++ ++|+-+. .+++..+.|-..|++
T Consensus 87 ~v~~v~~~~g~p~~~i~~lk~~g~~v~-~~v~s~~----~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 87 KVPVVTTGAGNPGKYIPRLKENGVKVI-PVVASVA----LAKRMEKAGADAVIA 135 (307)
T ss_pred CCCEEEEcCCCcHHHHHHHHHcCCEEE-EEcCCHH----HHHHHHHcCCCEEEE
Confidence 434455578999999999999999987 5666654 456667778877775
No 71
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=47.76 E-value=97 Score=26.20 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=58.6
Q ss_pred HHHHHHHHh--cCCcEEeCcC------hhhHHHHHHHHHHhhCCC-eEEEEecCCCcceeeeccccC-eeEEEcChhhHH
Q 026546 109 VEEMVTLNN--KNVQIVDTTC------PWVSKVWTSVEKHKKGDY-TSIIHGKYSHEETVATASFAG-KYIIVKNMKEAE 178 (237)
Q Consensus 109 ~~v~~~l~~--~g~~ivDaTC------P~V~kv~~~v~~~~~~Gy-~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~ 178 (237)
..+.+.|++ +|+.|+|-.| .|..-.++.++...+.-+ .-|++--.+--..++..=+.+ .+-++.|+..++
T Consensus 18 ~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGtGiG~siaANK~~GIRAa~~~d~~~A~ 97 (151)
T PTZ00215 18 NEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSGIGISIAANKVKGIRCALCHDHYTAR 97 (151)
T ss_pred HHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 466888999 9999999865 777777777777655432 234433222111111111111 235666766665
Q ss_pred hh-----hhhhc-CCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceE
Q 026546 179 YV-----CDYIL-GGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVG 221 (237)
Q Consensus 179 ~~-----~~~~~-~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~ 221 (237)
.- |+.+. +..+.+ .....+.++.| ++..|++.++..||.
T Consensus 98 ~ar~hNnaNVL~lGar~ig-~~~a~~iv~~f---L~t~F~ggrh~~Rv~ 142 (151)
T PTZ00215 98 MSRQHNNANVLAFGGRTTG-IEVAKEIIDTF---LSTPFEGGRHTERID 142 (151)
T ss_pred HHHHhcCCcEEEECccccC-HHHHHHHHHHH---HcCCCCCccHHHHHH
Confidence 43 22222 222221 12334555555 667788777776654
No 72
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=47.00 E-value=87 Score=30.52 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=50.1
Q ss_pred CCcEEeCcChhhHHHHHHHHHHhh-CCCeEEEEecCCCcceeeecccc----CeeEEEcChhhHHh
Q 026546 119 NVQIVDTTCPWVSKVWTSVEKHKK-GDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY 179 (237)
Q Consensus 119 g~~ivDaTCP~V~kv~~~v~~~~~-~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~~~ 179 (237)
++.+.|+-|.-...=|+.+++++. +=--+|++|.++-.=+.=+.--| ...+.+++.+|+..
T Consensus 263 ~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~~ 328 (387)
T PRK13371 263 HFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERILS 328 (387)
T ss_pred cccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcCC
Confidence 678899999999999999999976 68899999999887776554322 45788999999864
No 73
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=46.92 E-value=79 Score=34.13 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=74.4
Q ss_pred ecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHH
Q 026546 61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKH 140 (237)
Q Consensus 61 lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~ 140 (237)
+|=|--|++..++-.+.|+.|+--. .+ .++..|=-..-+..+.+.|+.+|=+|-|.+.-+....+-.
T Consensus 88 YGfLSEn~efA~~c~eaGI~FIGP~-----~e--------~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa 154 (1149)
T COG1038 88 YGFLSENPEFARACAEAGITFIGPK-----PE--------VLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFA 154 (1149)
T ss_pred cccccCCHHHHHHHHHcCCEEeCCC-----HH--------HHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHH
Confidence 6778899999999999999999531 11 1334444457788899999999999999999887766666
Q ss_pred hhCCCeEEEEecCCCcceeeeccccCe-eEEEcChhhHHhh
Q 026546 141 KKGDYTSIIHGKYSHEETVATASFAGK-YIIVKNMKEAEYV 180 (237)
Q Consensus 141 ~~~Gy~ivIiG~~~HpEv~g~~g~a~~-~~vv~~~~e~~~~ 180 (237)
.+.||.++| +|..|-.++ --+|.+.+|+..-
T Consensus 155 ~~~gyPvmi---------KA~~GGGGRGMR~vr~~~~l~~~ 186 (1149)
T COG1038 155 EEYGYPVMI---------KAAAGGGGRGMRVVRSEADLAEA 186 (1149)
T ss_pred HhcCCcEEE---------EEccCCCccceeeecCHHHHHHH
Confidence 677999886 455555444 4688888887654
No 74
>cd03108 AdSS Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Probab=46.90 E-value=33 Score=33.11 Aligned_cols=40 Identities=8% Similarity=0.103 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEe
Q 026546 106 GAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (237)
Q Consensus 106 Gv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG 151 (237)
|+.|...+++.++|+++-|. -+.....+..++|.+|++=|
T Consensus 130 GIGpay~dk~~R~gir~~Dl------d~~~~l~~a~~~gk~vLfEG 169 (363)
T cd03108 130 GIGPAYEDKAARRGIRVGDL------DTSYLINEAIQAGKKVLFEG 169 (363)
T ss_pred cchHHHHHhhhccCCeEEeC------cHHHHHHHHHHcCCcEEEEc
Confidence 67788899999999999987 33455566777899999877
No 75
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=46.88 E-value=53 Score=33.56 Aligned_cols=169 Identities=19% Similarity=0.177 Sum_probs=110.2
Q ss_pred hhHHHHHHHcCC-------cceecceEEEEeCCCCCcccH----------HHHHHHHHHHHhhCCCCceE-EecccccCH
Q 026546 7 SDIIKKLKENGF-------EYTWGNVKVKLAESYGFCWGV----------ERAVQIAYEARKQFPEEKIW-ITNEIIHNP 68 (237)
Q Consensus 7 s~~i~~~~~~~~-------~~~~g~m~I~lA~~~GFC~GV----------~RAv~~a~~a~~~~~~~~vy-~lgeiIHN~ 68 (237)
+++|.-.|+-|. ..+.-.|.+.+|.. -+|.|= ++-++.|.++.. +-|. =+|=|--|.
T Consensus 11 cRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADe-av~ig~a~~~~SYL~~~~I~~aa~~tga----qaihPGYGFLSEn~ 85 (670)
T KOG0238|consen 11 CRVIRTAKKMGIRTVAVYSDADRNSLHVKMADE-AVCIGPAPAAQSYLRMDKIIDAAKRTGA----QAIHPGYGFLSENA 85 (670)
T ss_pred ehhhhHHHHhCCeEEEEEccCccccceeecccc-eeecCCCchhhhhhhHHHHHHHHHhcCC----ceecCCccccccch
Confidence 456666666662 23345688888865 477773 333444433221 1122 367788899
Q ss_pred HHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEE
Q 026546 69 TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (237)
Q Consensus 69 ~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~iv 148 (237)
...+.+++.|+.|+- |+.+ .||.-|.--.-++.+++.|+.+|-.--..........+...+=||.|.
T Consensus 86 ~Fae~c~~~Gi~FiG-----------P~~~--aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvM 152 (670)
T KOG0238|consen 86 EFAELCEDAGITFIG-----------PPPS--AIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVM 152 (670)
T ss_pred HHHHHHHHcCCeEEC-----------CCHH--HHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEE
Confidence 999999999999995 2222 377777776777777788999987777777777777777778899988
Q ss_pred EEecCCCcceeeeccccCee-EEEcChhhHHhhhhhhcCCccCCCCchHHHHHHHH
Q 026546 149 IHGKYSHEETVATASFAGKY-IIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203 (237)
Q Consensus 149 IiG~~~HpEv~g~~g~a~~~-~vv~~~~e~~~~~~~~~~~q~~~~~~~~~~f~~~f 203 (237)
| +++.|-.++. -++.+.+|.+..-+-... +-..|-+|-.-|+|||
T Consensus 153 i---------Ka~~GGGGkGMria~~~~ef~~~~~~ak~-Ea~~sFGdd~~llEkf 198 (670)
T KOG0238|consen 153 I---------KATAGGGGKGMRIAWSEEEFEEGLESAKQ-EAAKSFGDDGMLLEKF 198 (670)
T ss_pred E---------EeccCCCCcceEeecChHHHHHHHHHHHH-HHHhhcCcchhhHHHh
Confidence 6 6677766554 677888887654211111 1122234556788888
No 76
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=46.62 E-value=61 Score=24.39 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=34.7
Q ss_pred CHHHHHHHHhcCCcEEe-CcChhhHHHHHHHHHHhhCCCeEEEEecCCCcce
Q 026546 108 AVEEMVTLNNKNVQIVD-TTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEET 158 (237)
Q Consensus 108 ~~~v~~~l~~~g~~ivD-aTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv 158 (237)
.+.+++.|++.|+...= .++-++.+-++.++++.++|+.|-.|| ..|+..
T Consensus 20 ~~~~~~~l~~~~i~at~fv~~~~~~~~~~~l~~l~~~G~ei~~H~-~~H~~~ 70 (123)
T PF01522_consen 20 YDRLLPLLKKYGIPATFFVIGSWVERYPDQLRELAAAGHEIGNHG-WSHPNL 70 (123)
T ss_dssp HHHHHHHHHHTT--EEEEE-HHHHHHHHHHHHHHHHTT-EEEEE--SSSSCG
T ss_pred HHHHHHHHHhcccceeeeecccccccccccchhHHHHHHHHHhcC-Cccccc
Confidence 36788999999988722 233457777899999999999999999 456654
No 77
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=45.78 E-value=1.8e+02 Score=24.24 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=58.1
Q ss_pred ceEEecccc-cCHHHHHHHHhcCcEEecCCccc-------------------cccccccCCCEEEE--cCCCCCHHHHHH
Q 026546 57 KIWITNEII-HNPTVNKRLEEMAVQNIPVEEGK-------------------KQFDVVNKGDVVVL--PAFGAAVEEMVT 114 (237)
Q Consensus 57 ~vy~lgeiI-HN~~Vv~~L~~~Gv~~v~~~~~~-------------------~~~~~v~~g~~VIi--rAHGv~~~v~~~ 114 (237)
-.|+.|.-+ -||.++.++.+.|..+-...-.- +.+.++.......| |.-..++..++.
T Consensus 36 TfFv~g~~~~~~~~~~~~i~~~Gheig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~~fr~P~G~~~~~~~~~ 115 (191)
T TIGR02764 36 TFFLSGSWAERHPELVKEIVKDGHEIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLTGKKPTLFRPPSGAFNKAVLKA 115 (191)
T ss_pred EEEeccHHHHHCHHHHHHHHhCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCCEEECCCcCCCHHHHHH
Confidence 577777776 57788888888886554321100 01112211122233 333467888999
Q ss_pred HHhcCCcEEeC-------cChhhHHHHHHHHHHhhCCCeEEEE
Q 026546 115 LNNKNVQIVDT-------TCPWVSKVWTSVEKHKKGDYTSIIH 150 (237)
Q Consensus 115 l~~~g~~ivDa-------TCP~V~kv~~~v~~~~~~Gy~ivIi 150 (237)
+++.|+.+++- .+|-+.++.+.+.+..+.|.-|++|
T Consensus 116 l~~~G~~~v~w~~~~~D~~~~~~~~i~~~~~~~~~~g~Iil~H 158 (191)
T TIGR02764 116 AESLGYTVVHWSVDSRDWKNPGVESIVDRVVKNTKPGDIILLH 158 (191)
T ss_pred HHHcCCeEEEecCCCCccCCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 99999998653 3566777777777777888766666
No 78
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=45.73 E-value=68 Score=27.97 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=44.0
Q ss_pred cchhHHHHHHHcCCcceecceEEEEeCCCCCc----ccHHHHHHHHHHHHhhCCCCceEEecccc-----cCHHHHHHHH
Q 026546 5 YTSDIIKKLKENGFEYTWGNVKVKLAESYGFC----WGVERAVQIAYEARKQFPEEKIWITNEII-----HNPTVNKRLE 75 (237)
Q Consensus 5 ~~s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC----~GV~RAv~~a~~a~~~~~~~~vy~lgeiI-----HN~~Vv~~L~ 75 (237)
|...+++.+++.||.+..-.+. +..++ .|.+.+++.+.+.+ .+ +.|.++|..- .-|.+++.|+
T Consensus 140 ~~~~~~~~l~~~Gy~~v~w~v~-----~~Dw~~~~~~~~~~~~~~v~~~~--~~-g~IiLlHd~~~~t~~aL~~ii~~lk 211 (224)
T TIGR02884 140 FSERTLAYTKELGYYTVFWSLA-----FKDWKVDEQPGWQYAYKQIMKKI--HP-GAILLLHAVSKDNAEALDKIIKDLK 211 (224)
T ss_pred cCHHHHHHHHHcCCcEEecccc-----CcccCCCCCCCHHHHHHHHHhcC--CC-CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 5566788888888766443321 22222 24455554443322 23 5799998742 3477889999
Q ss_pred hcCcEEec
Q 026546 76 EMAVQNIP 83 (237)
Q Consensus 76 ~~Gv~~v~ 83 (237)
++|..|+.
T Consensus 212 ~~Gy~fvt 219 (224)
T TIGR02884 212 EQGYTFKS 219 (224)
T ss_pred HCCCEEEE
Confidence 99999995
No 79
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=45.30 E-value=74 Score=32.48 Aligned_cols=138 Identities=17% Similarity=0.125 Sum_probs=87.9
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc--CcEEecCCccccccccccC-CCEEEEcCCCCCHH--
Q 026546 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE-- 110 (237)
Q Consensus 36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~v~~-g~~VIirAHGv~~~-- 110 (237)
|.=|.++=..|.+..++ +-.|.+.|+==| |.|..-+-.- .+.++++. ++++.++. ..+.+++==-.+.+
T Consensus 96 CP~V~k~~~~~~~~~~~--g~~ivi~G~~~H-pEv~g~~g~~~~~~~vv~~~---~~~~~~~~~~~~~~~~QTT~~~~~~ 169 (647)
T PRK00087 96 CPFVKNIQKLAKKYYEE--GYQIVIVGDKNH-PEVIGINGWCNNSAIIVEDG---EEAEKLPFDKKICVVSQTTEKQENF 169 (647)
T ss_pred CcCchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccccCCCEEEECCH---HHHhhCCCCCCEEEEEcCCCcHHHH
Confidence 66677776677666654 235777776444 3232222111 13333332 13333432 23344444444444
Q ss_pred --HHHHHHhc--CCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhHHh
Q 026546 111 --EMVTLNNK--NVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY 179 (237)
Q Consensus 111 --v~~~l~~~--g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~~~ 179 (237)
+.+.|++| .+.+.|+-|.-...=|+.+++++++=--++++|.++-.-+.=+.--| .+++.+++++|++.
T Consensus 170 ~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~ 246 (647)
T PRK00087 170 EKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPE 246 (647)
T ss_pred HHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCH
Confidence 45556654 56679999999999999999999999999999999998888665433 46788999999864
No 80
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=45.26 E-value=35 Score=25.96 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=31.2
Q ss_pred ccCCCE-EEEcCCCCCHHHH---HHHHhcCCcEEeCcChhhHHHHHHH
Q 026546 94 VNKGDV-VVLPAFGAAVEEM---VTLNNKNVQIVDTTCPWVSKVWTSV 137 (237)
Q Consensus 94 v~~g~~-VIirAHGv~~~v~---~~l~~~g~~ivDaTCP~V~kv~~~v 137 (237)
+.++|. ++|+..|-+++.. +.|+++|+.+|--||.--..+.+.+
T Consensus 51 ~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 51 LDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp CSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred ccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 345564 6788899998764 4667788888888877666665444
No 81
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=44.59 E-value=97 Score=29.58 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=44.5
Q ss_pred EEEEe-CCCC-CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecC
Q 026546 26 KVKLA-ESYG-FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (237)
Q Consensus 26 ~I~lA-~~~G-FC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~ 84 (237)
-+++| =|+| |.-..+.|++-|.+..++.+-.-|.+-|-..+.-..++.|.+.||-++-.
T Consensus 97 a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gH 157 (332)
T PLN02424 97 PLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGH 157 (332)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEe
Confidence 34553 4777 77789999999999876543346888877666668889999999998843
No 82
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=44.49 E-value=2.8e+02 Score=26.24 Aligned_cols=105 Identities=12% Similarity=0.203 Sum_probs=55.6
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHH----hh--CCCCceEEecccc--cCHHHHHHHHhcCcEEecCCcccccccccc
Q 026546 24 NVKVKLAESYGFCWGVERAVQIAYEAR----KQ--FPEEKIWITNEII--HNPTVNKRLEEMAVQNIPVEEGKKQFDVVN 95 (237)
Q Consensus 24 ~m~I~lA~~~GFC~GV~RAv~~a~~a~----~~--~~~~~vy~lgeiI--HN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~ 95 (237)
+..|+-....||-.....+.+.+.+++ .+ -+...|-+.|++- -..+...-|+++|+.++.-..+ .++++++
T Consensus 118 ~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d-~~~~~~~ 196 (396)
T cd01979 118 GVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPP-RRYTDLP 196 (396)
T ss_pred CCcEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCC-CChHHhh
Confidence 357888888898643444444443322 11 1224688888631 1134555678899987622111 1355555
Q ss_pred C--CCEEEEcCCCCCHHHHHHHHh-cCCcEEeCcChh
Q 026546 96 K--GDVVVLPAFGAAVEEMVTLNN-KNVQIVDTTCPW 129 (237)
Q Consensus 96 ~--g~~VIirAHGv~~~v~~~l~~-~g~~ivDaTCP~ 129 (237)
. ...+++..+......-+.|++ .|...+...-|+
T Consensus 197 ~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~ 233 (396)
T cd01979 197 VIGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPI 233 (396)
T ss_pred ccCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCc
Confidence 3 234555554443445566654 477565544443
No 83
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.92 E-value=1.1e+02 Score=23.05 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCcEEecC--Ccc--ccc--cc-cccCCCEEEEc----CCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHH
Q 026546 68 PTVNKRLEEMAVQNIPV--EEG--KKQ--FD-VVNKGDVVVLP----AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTS 136 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~--~~~--~~~--~~-~v~~g~~VIir----AHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~ 136 (237)
++..+.|++.|..++-- .++ ... ++ .+..-|.||+. +|+....+.+.+++.|+.++=+-..-+..+.+.
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~ 92 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERA 92 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 45556677888876654 111 111 22 34445777654 789999999999999999987765555555555
Q ss_pred HHH
Q 026546 137 VEK 139 (237)
Q Consensus 137 v~~ 139 (237)
..+
T Consensus 93 l~~ 95 (97)
T PF10087_consen 93 LER 95 (97)
T ss_pred HHh
Confidence 444
No 84
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=43.78 E-value=1.5e+02 Score=28.18 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=59.4
Q ss_pred eEEEEeCCCCCccc---HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEE
Q 026546 25 VKVKLAESYGFCWG---VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV 101 (237)
Q Consensus 25 m~I~lA~~~GFC~G---V~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VI 101 (237)
|+|.+---.|.-.| |.|-..+|.+..+. +..-+|..++.+-+ +.-. ...|..+..-.. ..++-+. +.|.||
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~-~~~~~fl~k~~~e~--~~~~-~~~~f~~~~~~~-~n~ik~~-k~d~lI 74 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKR-GFACLFLTKQDIEA--IIHK-VYEGFKVLEGRG-NNLIKEE-KFDLLI 74 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhc-CceEEEecccchhh--hhhh-hhhhccceeeec-ccccccc-cCCEEE
Confidence 44444333344444 89999999887764 23468877766544 1111 122333322110 0122233 378999
Q ss_pred EcCCCCCHHHHHHHH-hcCCcE--EeCcChh
Q 026546 102 LPAFGAAVEEMVTLN-NKNVQI--VDTTCPW 129 (237)
Q Consensus 102 irAHGv~~~v~~~l~-~~g~~i--vDaTCP~ 129 (237)
|-+-|++.+..+.++ +.|.++ +|.-|+.
T Consensus 75 ~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~ 105 (318)
T COG3980 75 FDSYGLNADDFKLIKEEAGSKILIFDDENAK 105 (318)
T ss_pred EeccCCCHHHHHHHHHHhCCcEEEecCCCcc
Confidence 999999999999998 555554 8999975
No 85
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=43.09 E-value=47 Score=33.52 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=43.7
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 026546 33 YGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 33 ~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~ 83 (237)
..+--.|.++|+.+.++.++. ++++-+.|++.-+|.....|-.+|+.++.
T Consensus 474 ~~~hPaV~~~i~~vi~~a~~~-g~~v~vCGe~a~~p~~~~~l~~~G~~~ls 523 (565)
T TIGR01417 474 QPYNPAVLRLIKLVIDAAKAE-GIWVGMCGEMAGDERAIPLLLGLGLRELS 523 (565)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCeEEEeCCcCCCHHHHHHHHHCCCCEEE
Confidence 345679999999998888765 47899999999999999999999999885
No 86
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=42.81 E-value=2.8e+02 Score=25.78 Aligned_cols=22 Identities=5% Similarity=0.058 Sum_probs=11.2
Q ss_pred eEEecccccCHHHHHHHHhcCcE
Q 026546 58 IWITNEIIHNPTVNKRLEEMAVQ 80 (237)
Q Consensus 58 vy~lgeiIHN~~Vv~~L~~~Gv~ 80 (237)
+.|.|-++ ++...+.|.+.|+.
T Consensus 95 i~TNG~ll-~~~~~~~L~~~g~~ 116 (378)
T PRK05301 95 LITSGVGL-TEARLAALKDAGLD 116 (378)
T ss_pred EECCCccC-CHHHHHHHHHcCCC
Confidence 44555544 34445666655543
No 87
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=42.59 E-value=83 Score=29.60 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=47.4
Q ss_pred cCHHHHHHHHhcCcEEecC-Ccccc-ccc-cccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHH
Q 026546 66 HNPTVNKRLEEMAVQNIPV-EEGKK-QFD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEK 139 (237)
Q Consensus 66 HN~~Vv~~L~~~Gv~~v~~-~~~~~-~~~-~v~~g~~VIirAHGv~~~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~ 139 (237)
-||.+++.|.+.|..+-=. ..+.+ -+. .+ +++.+++...+-+++.++.+.+.|+.| +|.-.-+ .++.+.+++
T Consensus 38 ~~~~il~~l~~~G~g~DvaS~~El~~al~~G~-~~~~Ii~~gp~K~~~~L~~ai~~gv~i~iDS~~El-~~i~~~a~~ 113 (379)
T cd06836 38 PLVPVLRLLAEAGAGAEVASPGELELALAAGF-PPERIVFDSPAKTRAELREALELGVAINIDNFQEL-ERIDALVAE 113 (379)
T ss_pred CCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCC-ChhhEEEeCCCCCHHHHHHHHHCCCEEEECCHHHH-HHHHHHHHH
Confidence 5777999999999875211 11100 011 12 356799999999999999999999865 5554433 455555544
No 88
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=42.18 E-value=1.8e+02 Score=24.56 Aligned_cols=84 Identities=7% Similarity=-0.010 Sum_probs=57.1
Q ss_pred EcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccCeeEEE-cChhhHHh
Q 026546 102 LPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIV-KNMKEAEY 179 (237)
Q Consensus 102 irAHGv~~~v~~~l~~~g~~-ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~~~~vv-~~~~e~~~ 179 (237)
|=+-+-.+.....++..|+. +.+..-|.-.-+....+++.-..-.++.+||... -+.+.. .++-.+.+ ...++++.
T Consensus 55 IiT~k~~~~~~~~l~~lgi~~~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~n-Di~~~~-~ag~~~am~nA~~~lk~ 132 (169)
T TIGR02726 55 IITSKKSGAVRHRAEELKIKRFHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDLV-DLSMMK-RVGLAVAVGDAVADVKE 132 (169)
T ss_pred EEECCCcHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHHcCcCHHHEEEECCCHH-HHHHHH-HCCCeEECcCchHHHHH
Confidence 33344566777788888885 5788778877788888887666678999999863 333322 23333444 44678888
Q ss_pred hhhhhcCC
Q 026546 180 VCDYILGG 187 (237)
Q Consensus 180 ~~~~~~~~ 187 (237)
.++|++..
T Consensus 133 ~A~~I~~~ 140 (169)
T TIGR02726 133 AAAYVTTA 140 (169)
T ss_pred hCCEEcCC
Confidence 89998753
No 89
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=40.83 E-value=1.9e+02 Score=28.21 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhCCC-CceEEe--cccccCH----HHHHHHHhc--CcEEecCCccc---cccccccC-C-CEEEEcCC
Q 026546 40 ERAVQIAYEARKQFPE-EKIWIT--NEIIHNP----TVNKRLEEM--AVQNIPVEEGK---KQFDVVNK-G-DVVVLPAF 105 (237)
Q Consensus 40 ~RAv~~a~~a~~~~~~-~~vy~l--geiIHN~----~Vv~~L~~~--Gv~~v~~~~~~---~~~~~v~~-g-~~VIirAH 105 (237)
+.+++.+.+..+..++ ..|.+. ||-..|| .....++++ |+.+.=+++|. +.++++.+ | |.|.|+-+
T Consensus 63 ee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islk 142 (442)
T TIGR01290 63 EQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITIN 142 (442)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEecc
Confidence 4667777666654331 224444 4555554 344555665 77654344442 23444433 2 68999999
Q ss_pred CCCHHHHHHH------HhcCCcEEeCcChhhHHHHHHHHHHhhCCCe
Q 026546 106 GAAVEEMVTL------NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146 (237)
Q Consensus 106 Gv~~~v~~~l------~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ 146 (237)
++.|+..+++ +.+.+.-.++.-.+..++.+-++.+.+.|..
T Consensus 143 a~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~ 189 (442)
T TIGR01290 143 AIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGIL 189 (442)
T ss_pred CCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCe
Confidence 9999998765 1222333444444455566666666666654
No 90
>TIGR00184 purA adenylosuccinate synthase. Alternate name IMP--aspartate ligase.
Probab=40.80 E-value=36 Score=33.50 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHhcCCcEEeCcCh--hhHHHHHHHH
Q 026546 106 GAAVEEMVTLNNKNVQIVDTTCP--WVSKVWTSVE 138 (237)
Q Consensus 106 Gv~~~v~~~l~~~g~~ivDaTCP--~V~kv~~~v~ 138 (237)
|+.|...+++.++|+++-|.-.| |-.|+....+
T Consensus 128 GIGPaY~dK~~R~giR~~Dl~~~~~~~~kl~~~~~ 162 (425)
T TIGR00184 128 GIGPAYEDKVARSGLRVGDLLDDEAFAEKAKNILE 162 (425)
T ss_pred CcHHHHHHHhhccccchhhhcCHHHHHHHHHHHHH
Confidence 67788888999999999999998 5666654433
No 91
>cd07053 BMC_PduT_repeat1 1,2-propanediol utilization protein T (PduT), Bacterial Micro-Compartment (BMC) domain repeat 1. PduT proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles which are involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduT might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles at present no experimental evidence directly supports this view. PduT proteins contain two tandem BMC domains repeats. This CD contains repeat 1 (the first BMC domain of PduT) as well as carboxysome shell protein sequence homolog, EutM protein, are also included in this CD. They too might exist as hexamers and might play similar functional roles in the construction of the eut organelle outer shell which still remains poorly understood.
Probab=40.56 E-value=39 Score=25.23 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhCCCCceEEecccccCHH
Q 026546 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPT 69 (237)
Q Consensus 39 V~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~ 69 (237)
|+-|++.+.+...+ -++...+|+||+
T Consensus 50 V~~Av~a~~~~~~~-----~~v~~~vI~~p~ 75 (76)
T cd07053 50 VQAAVDAGKEIGGK-----YVVDSFVLPNVH 75 (76)
T ss_pred HHHHHHHHHHHhCC-----cEEEEEEeCCCC
Confidence 77777777765532 378888888885
No 92
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=40.19 E-value=1.2e+02 Score=27.49 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=17.9
Q ss_pred cccCHHHHHHHHhcCcEEecC
Q 026546 64 IIHNPTVNKRLEEMAVQNIPV 84 (237)
Q Consensus 64 iIHN~~Vv~~L~~~Gv~~v~~ 84 (237)
=-.|+.+.+.|+++|...+.-
T Consensus 185 G~~n~~~~~~l~~~G~~~v~W 205 (268)
T TIGR02873 185 GSFNDNVVQIAADLQMGTIMW 205 (268)
T ss_pred CCCCHHHHHHHHHCCCeEEEe
Confidence 357999999999999998863
No 93
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=40.07 E-value=83 Score=28.12 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=41.4
Q ss_pred EcCCCCCHHHH-HHHHhcCCcEEe--CcChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 026546 102 LPAFGAAVEEM-VTLNNKNVQIVD--TTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (237)
Q Consensus 102 irAHGv~~~v~-~~l~~~g~~ivD--aTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~ 154 (237)
+..|+++.+.. ..++..|+.++- ..|+.-..+....+-+.+.|.+.|+.|+-.
T Consensus 40 ~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~ 95 (223)
T TIGR00290 40 YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIY 95 (223)
T ss_pred ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcc
Confidence 47799999887 566779998765 778776677666666677799999999864
No 94
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=39.72 E-value=1.3e+02 Score=25.26 Aligned_cols=93 Identities=9% Similarity=-0.032 Sum_probs=54.3
Q ss_pred CCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccCeeEEEcChh-hHHhhhhhh
Q 026546 107 AAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMK-EAEYVCDYI 184 (237)
Q Consensus 107 v~~~v~~~l~~~g~~-ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~~~-e~~~~~~~~ 184 (237)
-.+.+...+++.|+. +.++..|....+.+..+++.-+.-.++.+||..+-- .+.. .++-.+.+.+.. .++..++|+
T Consensus 74 ~~~~v~~~l~~lgl~~~f~g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~-~~a~-~aG~~~~v~~~~~~~~~~a~~v 151 (183)
T PRK09484 74 KSKLVEDRMTTLGITHLYQGQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDW-PVME-KVGLSVAVADAHPLLLPRADYV 151 (183)
T ss_pred CcHHHHHHHHHcCCceeecCCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHH-HHHH-HCCCeEecCChhHHHHHhCCEE
Confidence 445666677777775 566666777777777777766667899999985432 2221 122223444443 345567777
Q ss_pred cCCccCCCCchHHHHHHHH
Q 026546 185 LGGELNGSSSTKEAFLEKF 203 (237)
Q Consensus 185 ~~~q~~~~~~~~~~f~~~f 203 (237)
+.. .+..+...++.+.+
T Consensus 152 ~~~--~~g~g~~~el~~~i 168 (183)
T PRK09484 152 TRI--AGGRGAVREVCDLL 168 (183)
T ss_pred ecC--CCCCCHHHHHHHHH
Confidence 642 12224555555544
No 95
>PLN02621 nicotinamidase
Probab=39.63 E-value=1.9e+02 Score=24.52 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCcE-----EeCc-ChhhHHHHHHHHHHhhCCCeEEEEec
Q 026546 109 VEEMVTLNNKNVQI-----VDTT-CPWVSKVWTSVEKHKKGDYTSIIHGK 152 (237)
Q Consensus 109 ~~v~~~l~~~g~~i-----vDaT-CP~V~kv~~~v~~~~~~Gy~ivIiG~ 152 (237)
.+..+.|+++|+.- +.|. | |...+....+.||+++++-+
T Consensus 116 t~L~~~L~~~gi~~lvi~Gv~T~~C-----V~~Ta~~a~~~gy~v~v~~D 160 (197)
T PLN02621 116 TRLEERLRKIGVKEVIVTGVMTNLC-----CETTAREAFVRGFRVFFSTD 160 (197)
T ss_pred CcHHHHHHHCCCCEEEEEecccchh-----HHHHHHHHHHCCCEEEEecc
Confidence 46677788888763 2332 3 45567888899999999875
No 96
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=39.58 E-value=32 Score=29.80 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCc-----EEeCcChhhHHHHHHHHH---HhhCCCeEEEEe
Q 026546 110 EEMVTLNNKNVQ-----IVDTTCPWVSKVWTSVEK---HKKGDYTSIIHG 151 (237)
Q Consensus 110 ~v~~~l~~~g~~-----ivDaTCP~V~kv~~~v~~---~~~~Gy~ivIiG 151 (237)
+..+.++++|+. |.|-..|-....|+...+ .-++|.+|+||=
T Consensus 91 ~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC 140 (168)
T PF05706_consen 91 DLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHC 140 (168)
T ss_dssp THHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-
T ss_pred cHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEC
Confidence 455667777765 478888877766665544 446799999985
No 97
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=39.49 E-value=67 Score=32.15 Aligned_cols=70 Identities=23% Similarity=0.338 Sum_probs=44.8
Q ss_pred chhHHH-HHHHcCCcceecceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 026546 6 TSDIIK-KLKENGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 6 ~s~~i~-~~~~~~~~~~~g~m~I~lA~~~GF-C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~ 83 (237)
.+.||+ ..+--|.+|.||+. .+.|| |.|.-+ .+++. ++ |+-|..-......|..+-
T Consensus 366 ~~~iv~~A~~~lG~PY~wGG~-----sp~gfDCSGlV~---~vy~~---~G----------I~LPR~s~~Q~~~G~~Vs- 423 (481)
T PRK13914 366 ASAIIAEAQKHLGKAYSWGGN-----GPTTFDCSGYTK---YVFAK---AG----------ISLPRTSGAQYASTTRIS- 423 (481)
T ss_pred HHHHHHHHHHHcCCcccCCCC-----CCCCcccHHHHH---HHHHH---cC----------CCCCCChHHHHhcCcccc-
Confidence 345665 44455899999974 56799 999854 56543 32 444544455556664432
Q ss_pred CCccccccccccCCCEEEEcC
Q 026546 84 VEEGKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 84 ~~~~~~~~~~v~~g~~VIirA 104 (237)
.+++.+||.|+|..
T Consensus 424 -------~selqpGDLVFF~~ 437 (481)
T PRK13914 424 -------ESQAKPGDLVFFDY 437 (481)
T ss_pred -------cccCCCCCEEEeCC
Confidence 46778899998863
No 98
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=39.32 E-value=1.8e+02 Score=22.46 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCC---
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD--- 144 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~G--- 144 (237)
..+...|.++|...+++. .+-|.+||.+=+|..+-.+ |+++.++++.+..
T Consensus 17 e~i~~~l~~~G~~~~~~~---------e~AD~iiiNTC~V~~~Ae~------------------k~~~~i~~l~~~~~~~ 69 (98)
T PF00919_consen 17 ERIASILQAAGYEIVDDP---------EEADVIIINTCTVRESAEQ------------------KSRNRIRKLKKLKKPG 69 (98)
T ss_pred HHHHHHHHhcCCeeeccc---------ccCCEEEEEcCCCCcHHHH------------------HHHHHHHHHHHhcCCC
Confidence 346678899999988642 3457899988888765554 3445555555544
Q ss_pred CeEEEEe
Q 026546 145 YTSIIHG 151 (237)
Q Consensus 145 y~ivIiG 151 (237)
-.|++.|
T Consensus 70 ~~ivv~G 76 (98)
T PF00919_consen 70 AKIVVTG 76 (98)
T ss_pred CEEEEEe
Confidence 6666666
No 99
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=39.21 E-value=63 Score=23.10 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCe-EEEEecCC
Q 026546 110 EEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (237)
Q Consensus 110 ~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~~~~~Gy~-ivIiG~~~ 154 (237)
++.+.|++.|+.+ +|-.. .+..++.++..+.|+. ++++|+..
T Consensus 22 ~~~~~Lr~~g~~v~~~~~~---~~~~k~~~~a~~~g~~~~iiig~~e 65 (94)
T cd00738 22 KLLNALLANGIRVLYDDRE---RKIGKKFREADLRGVPFAVVVGEDE 65 (94)
T ss_pred HHHHHHHHCCCEEEecCCC---cCHhHHHHHHHhCCCCEEEEECCCh
Confidence 3567788888877 55543 5777777777788865 78888644
No 100
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.12 E-value=3.5e+02 Score=25.74 Aligned_cols=107 Identities=9% Similarity=0.086 Sum_probs=61.0
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHhc--CcEEecCCccccccccccCCCEEEEcCCCCCH--HHHHHHHhcC
Q 026546 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--EEMVTLNNKN 119 (237)
Q Consensus 44 ~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~--~v~~~l~~~g 119 (237)
.+|.-+.+. + -.|.. -+.-.++...+.|+++ |+.+..... +.+.+.+-|.||++. |+|+ ..+..++++|
T Consensus 20 s~a~~L~~~-G-~~v~~-~D~~~~~~~~~~l~~~~~g~~~~~~~~---~~~~~~~~d~vV~sp-~i~~~~p~~~~a~~~~ 92 (448)
T PRK03803 20 SVVRFLARQ-G-IPFAV-MDSREQPPGLDTLAREFPDVELRCGGF---DCELLVQASEIIISP-GLALDTPALRAAAAMG 92 (448)
T ss_pred HHHHHHHhC-C-CeEEE-EeCCCCchhHHHHHhhcCCcEEEeCCC---ChHHhcCCCEEEECC-CCCCCCHHHHHHHHCC
Confidence 344444443 2 23443 3333355455678874 988764211 123344456677766 9985 4677788899
Q ss_pred CcEEe---C-----cChhh---------HHHHHHHHHHhhCCCeEEEEecCCCcc
Q 026546 120 VQIVD---T-----TCPWV---------SKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (237)
Q Consensus 120 ~~ivD---a-----TCP~V---------~kv~~~v~~~~~~Gy~ivIiG~~~HpE 157 (237)
+.|+. . .+|.| +-..-.+.-+.+.|+++.+-|.-+.|-
T Consensus 93 i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~ 147 (448)
T PRK03803 93 IEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA 147 (448)
T ss_pred CcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence 98863 0 12222 233334455667889888888866664
No 101
>PRK02287 hypothetical protein; Provisional
Probab=39.11 E-value=76 Score=27.55 Aligned_cols=58 Identities=14% Similarity=0.353 Sum_probs=40.8
Q ss_pred HHHHhcCcEEecCCccccccccccCCCEEEEcCCC---CCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhh
Q 026546 72 KRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG---AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142 (237)
Q Consensus 72 ~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHG---v~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~ 142 (237)
.+|.+.|....-.. ...+|.| .||+.-+| +||+..+...+.|+.+||++ |+++++...
T Consensus 20 ~KL~r~g~~~~~~~-----~~~~~~g-~IvL~P~a~~~lSp~D~~~~~~~Gi~vlDcS-------W~~~~~~~~ 80 (171)
T PRK02287 20 RKLVRFGLARLVRS-----IRKIPRG-SIVLNPFAEKALSPADRDIVEKRGIVALDCS-------WNEAERVFF 80 (171)
T ss_pred HHHHhCCceeEecc-----cccCCCC-eEEECCCCCcCcCHHHHHhhhhCCEEEEECC-------HHHHhhhhh
Confidence 57888898755321 2233433 37777776 57999999999999999998 666665543
No 102
>PRK04293 adenylosuccinate synthetase; Provisional
Probab=38.95 E-value=46 Score=31.78 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=56.5
Q ss_pred EecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCC-------------------CCCHHHHHHHHhcCC
Q 026546 60 ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF-------------------GAAVEEMVTLNNKNV 120 (237)
Q Consensus 60 ~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAH-------------------Gv~~~v~~~l~~~g~ 120 (237)
-.|-.||-+...++++..|+. +. =-+.+...||+|.| |+.|...+++.++|+
T Consensus 71 G~GvVv~p~~L~~Ei~~L~~~--~r-------L~Is~ra~li~p~H~~~D~~~E~~~~~IGTT~rGIGpaY~dk~~R~gi 141 (333)
T PRK04293 71 GAGVLVDPEVLLKEVEELNVG--GR-------VFVDYRCGIIEEKHVEEDRSDEHLSKKIGSTGTGCGPANADRVLRRLK 141 (333)
T ss_pred CCcEEECHHHHHHHHHHhCCC--CC-------EEEcCCCccCCHHHHHHhHHhHHhCCCCCCCCCcccHhhHHHHhhhhh
Confidence 445566666777888777741 10 01122344555555 788999999999999
Q ss_pred cEEeCc--ChhhHHHHHHHHHHhhCCCeEEEEe
Q 026546 121 QIVDTT--CPWVSKVWTSVEKHKKGDYTSIIHG 151 (237)
Q Consensus 121 ~ivDaT--CP~V~kv~~~v~~~~~~Gy~ivIiG 151 (237)
++.|.. =|+|.-+.....+..++|.+|++=|
T Consensus 142 r~~~~~~l~~~v~d~~~~l~~al~~gk~vLfEG 174 (333)
T PRK04293 142 LAKDVEELEKYLTDVPEEVNEALDRGENVLIEG 174 (333)
T ss_pred hccchhhhccceecHHHHHHHHHHCCCeEEEEe
Confidence 997732 3567777777788888898888866
No 103
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=38.75 E-value=78 Score=31.08 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=37.7
Q ss_pred CCCEEEEcC-CC---------CCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCe-EEEEecCC
Q 026546 96 KGDVVVLPA-FG---------AAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (237)
Q Consensus 96 ~g~~VIirA-HG---------v~~~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~~~~~Gy~-ivIiG~~~ 154 (237)
+-+++|++- ++ ...++.+.|++.|+.+ +|..- .++-++.++..+.|.. +|++|...
T Consensus 282 P~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~---~s~gkk~k~Ae~~GvP~~IiIG~~E 349 (472)
T TIGR00408 282 PIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRD---NRPGRKFYQWEIKGIPLRIEVGPND 349 (472)
T ss_pred cceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC---CCHHHHHHHHHHCCCCEEEEECcch
Confidence 345778875 22 2345677888899988 77653 2666666777788876 67777653
No 104
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=38.37 E-value=2.9e+02 Score=24.59 Aligned_cols=27 Identities=7% Similarity=0.219 Sum_probs=21.5
Q ss_pred CCCceEEecccccCHHHHHHHHhcCcEEecC
Q 026546 54 PEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (237)
Q Consensus 54 ~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~ 84 (237)
++++||++|+ +...+.|++.|+..+..
T Consensus 84 ~~~~v~~iG~----~~~~~~l~~~g~~~~~~ 110 (279)
T TIGR01452 84 APKAVYVIGE----EGLRAELDAAGIRLAGD 110 (279)
T ss_pred CCCEEEEEcC----HHHHHHHHHCCCEEecC
Confidence 3467999996 56788999999998754
No 105
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=37.99 E-value=40 Score=30.22 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=24.3
Q ss_pred EEeCcChhhHHHHHHHHHHhhCC-CeEEEE
Q 026546 122 IVDTTCPWVSKVWTSVEKHKKGD-YTSIIH 150 (237)
Q Consensus 122 ivDaTCP~V~kv~~~v~~~~~~G-y~ivIi 150 (237)
..|-+|||=+|.|..+..+.+.| .++..+
T Consensus 124 FtDp~CpyC~kl~~~l~~~~~~g~V~v~~i 153 (251)
T PRK11657 124 FADPNCPYCKQFWQQARPWVDSGKVQLRHI 153 (251)
T ss_pred EECCCChhHHHHHHHHHHHhhcCceEEEEE
Confidence 37999999999999999998888 555444
No 106
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=37.92 E-value=2.4e+02 Score=23.59 Aligned_cols=109 Identities=16% Similarity=0.225 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCcEEeCcC---hhhHHHHHHHHHHhhC-CCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHhh---
Q 026546 109 VEEMVTLNNKNVQIVDTTC---PWVSKVWTSVEKHKKG-DYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYV--- 180 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDaTC---P~V~kv~~~v~~~~~~-Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~~--- 180 (237)
..+.+.|+++|+.|+|-.| .|..-.++.++...+. ...=|++.-.+--.-++..=+.+ .+-++.|+..++.-
T Consensus 16 ~~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaANKv~GIRaA~~~d~~~A~~ar~h 95 (141)
T PRK12613 16 ELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLKGMVAAEVSDERSAYMTRGH 95 (141)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHHH
Confidence 4568899999999999885 5555555555555332 22333333222111111111111 24566777666543
Q ss_pred --hhhhc-CCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceE
Q 026546 181 --CDYIL-GGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVG 221 (237)
Q Consensus 181 --~~~~~-~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~ 221 (237)
++.+. +..+.+ .....+.++.| ++..|+..++..||.
T Consensus 96 NnaNVl~lG~r~ig-~~~a~~iv~~f---L~t~f~ggrh~~Rv~ 135 (141)
T PRK12613 96 NNARMITMGAEIVG-PELAKNIAKGF---VTGPYDGGRHQIRVD 135 (141)
T ss_pred cCCcEEEECccccC-HHHHHHHHHHH---HcCCCCCccHHHHHH
Confidence 23332 222222 23334555555 667777666766653
No 107
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=37.83 E-value=2.3e+02 Score=24.16 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=26.3
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEE
Q 026546 94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (237)
Q Consensus 94 v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIi 150 (237)
+++=|.||||- |-+...++.|.+. ....+.++++.++|-.|+-|
T Consensus 38 l~~~D~lilPG-G~~~~~~~~L~~~------------~~~~~~i~~~~~~g~pilgI 81 (198)
T cd03130 38 LPDADGLYLGG-GYPELFAEELSAN------------QSMRESIRAFAESGGPIYAE 81 (198)
T ss_pred CCCCCEEEECC-CchHHHHHHHHhh------------HHHHHHHHHHHHcCCCEEEE
Confidence 34447899999 8766555566431 23455666666666554433
No 108
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=37.75 E-value=3.1e+02 Score=24.84 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=60.2
Q ss_pred CcccHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHhcCcEEecCCcccc-------------------cccc
Q 026546 35 FCWGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEGKK-------------------QFDV 93 (237)
Q Consensus 35 FC~GV~RAv~~a~~a~~~~~-~~~vy~lgeiI-HN~~Vv~~L~~~Gv~~v~~~~~~~-------------------~~~~ 93 (237)
+-.+|+.-+..+.+++++++ ....|+.|.++ ++|.+++++.+.|-.+....-.-. -+++
T Consensus 22 ~~~rv~~nt~riL~lL~~~gikATFFv~g~~~e~~p~lir~i~~~GhEIgsHg~sH~~l~~ls~ee~~~eI~~s~~~Le~ 101 (265)
T TIGR03006 22 LPCRVERNTDRILDLLDRHGVKATFFTLGWVAERYPELVRRIVAAGHELASHGYGHERVTTQTPEAFRADIRRSKALLED 101 (265)
T ss_pred ccchHHHhHHHHHHHHHHcCCcEEEEEeccchhhCHHHHHHHHHcCCEeeeccccCcCchhCCHHHHHHHHHHHHHHHHH
Confidence 33455555556666666654 23689999988 899999999999977654321100 1222
Q ss_pred ccCCCEEEEcCCCCC-----HHHHHHHHhcCCcEEeCcChh
Q 026546 94 VNKGDVVVLPAFGAA-----VEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 94 v~~g~~VIirAHGv~-----~~v~~~l~~~g~~ivDaTCP~ 129 (237)
+....+.-+||-+-+ +...+.|++.|+...=..||.
T Consensus 102 itG~~~~gfRaP~~s~~~~t~~a~~iL~e~Gy~YdsS~~p~ 142 (265)
T TIGR03006 102 LSGQPVRGYRAPSFSIGKKNLWALDVLAEAGYRYSSSIYPV 142 (265)
T ss_pred HhCCCceEEECCCCCCCCCcHHHHHHHHHCCCEEEEeeccC
Confidence 222234568877632 344788999999876555665
No 109
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=37.69 E-value=23 Score=26.14 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=37.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccC
Q 026546 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG 166 (237)
Q Consensus 99 ~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~ 166 (237)
.+|+=.||.....- +-...++.++++||.|+.+=.++|-...|..|+.+
T Consensus 17 ~~v~i~HG~~eh~~-------------------ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~ 65 (79)
T PF12146_consen 17 AVVVIVHGFGEHSG-------------------RYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHID 65 (79)
T ss_pred EEEEEeCCcHHHHH-------------------HHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccC
Confidence 46666798854332 33456899999999999999999999988777654
No 110
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=37.65 E-value=37 Score=25.72 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCC
Q 026546 130 VSKVWTSVEKHKKGDYTSIIHGKYS 154 (237)
Q Consensus 130 V~kv~~~v~~~~~~Gy~ivIiG~~~ 154 (237)
=+.||+.++++.+.||+|-...+++
T Consensus 33 RtaVwK~Iq~Lr~~G~~I~s~~~kG 57 (79)
T COG1654 33 RTAVWKHIQQLREEGVDIESVRGKG 57 (79)
T ss_pred HHHHHHHHHHHHHhCCceEecCCCc
Confidence 3689999999999999998887544
No 111
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=37.42 E-value=60 Score=24.79 Aligned_cols=21 Identities=10% Similarity=0.416 Sum_probs=15.5
Q ss_pred cCCCE-EEEcCCCCCHHHHHHH
Q 026546 95 NKGDV-VVLPAFGAAVEEMVTL 115 (237)
Q Consensus 95 ~~g~~-VIirAHGv~~~v~~~l 115 (237)
.++|. ++|+-.|-++++.+.+
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~ 66 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAAL 66 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHH
Confidence 34564 6789999999886655
No 112
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=37.02 E-value=2.5e+02 Score=23.54 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=48.7
Q ss_pred CceEEecccccCHHHHHHHHhcC--cEEecCCccccccccccC------CCEEEEcCCCCCHHHHHHHHhcCCcEEeCcC
Q 026546 56 EKIWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (237)
Q Consensus 56 ~~vy~lgeiIHN~~Vv~~L~~~G--v~~v~~~~~~~~~~~v~~------g~~VIirAHGv~~~v~~~l~~~g~~ivDaTC 127 (237)
..|+.+|+++. +.+.+.|++.+ +..|..+.+. ...+|. ++.=|+=.||-+..
T Consensus 31 d~iih~GDi~~-~~~~~~l~~~~~~~~~V~GN~D~--~~~lp~~~~~~~~g~~i~l~HG~~~~----------------- 90 (178)
T cd07394 31 QHVLCTGNLCS-KETYDYLKTIAPDVHIVRGDFDE--NLNYPETKVITVGQFKIGLIHGHQVV----------------- 90 (178)
T ss_pred CEEEECCCCCC-HHHHHHHHhhCCceEEEECCCCc--cccCCCcEEEEECCEEEEEEECCcCC-----------------
Confidence 37999999976 88889998854 6677653321 012333 22234456774310
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEEecCCCcceee
Q 026546 128 PWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA 160 (237)
Q Consensus 128 P~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g 160 (237)
|+- .-....+...+.++.+++.||...|...=
T Consensus 91 ~~~-~~~~~~~~~~~~~~dvii~GHTH~p~~~~ 122 (178)
T cd07394 91 PWG-DPDSLAALQRQLDVDILISGHTHKFEAFE 122 (178)
T ss_pred CCC-CHHHHHHHHHhcCCCEEEECCCCcceEEE
Confidence 100 00111222335678999999999997753
No 113
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=37.02 E-value=2.2e+02 Score=23.83 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCcEEeCcC------hhhHHHHHHHHHHhhC--CCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHh
Q 026546 109 VEEMVTLNNKNVQIVDTTC------PWVSKVWTSVEKHKKG--DYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEY 179 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDaTC------P~V~kv~~~v~~~~~~--Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~ 179 (237)
..+.+.|+++|+.|+|-.| .|..-.++.++...+. .+-|+|=| .+---.++..-+.+ .+-++.|+..++.
T Consensus 15 ~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCG-tGiG~siaANK~~GIraa~~~d~~~A~~ 93 (143)
T TIGR01120 15 EEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICG-TGIGMSIAANKFAGIRAALCSEPYMAQM 93 (143)
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcC-CcHHHHHHHhcCCCeEEEEECCHHHHHH
Confidence 4567889999999999766 6776667666666443 23333333 22111111111111 2356677766654
Q ss_pred h-----hhhhc-CCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcce
Q 026546 180 V-----CDYIL-GGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKV 220 (237)
Q Consensus 180 ~-----~~~~~-~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v 220 (237)
- ++.+. +..+.+ .....+.++.| ++..|+..++..||
T Consensus 94 ar~hNnaNvl~lG~r~~g-~~~a~~iv~~f---l~t~f~ggrh~~Rv 136 (143)
T TIGR01120 94 SRLHNDANVLCLGERVVG-LELAKSIVDAW---LGTQFEGGRHQQRV 136 (143)
T ss_pred HHHhcCCcEEEECcceeC-HHHHHHHHHHH---HcCCCCCCccHHHH
Confidence 3 22222 222221 12233445555 66777766666655
No 114
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=36.71 E-value=3.1e+02 Score=24.56 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=64.4
Q ss_pred ccHHHHHHHHHHHHhhCCCC-ceEEecccc----------cCH----HHHHHHHhcCcEEecCCccccccccc-cCCCEE
Q 026546 37 WGVERAVQIAYEARKQFPEE-KIWITNEII----------HNP----TVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVV 100 (237)
Q Consensus 37 ~GV~RAv~~a~~a~~~~~~~-~vy~lgeiI----------HN~----~Vv~~L~~~Gv~~v~~~~~~~~~~~v-~~g~~V 100 (237)
-+.+.+.+.+.+..+...+. ++|..|... -.+ .+++..++.|+.+.-...+...+... ..|-..
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~G~~~ 196 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRAGVDT 196 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCE
Confidence 34555566666655543221 577766321 122 34555677787765432221111111 113223
Q ss_pred EEcCCCCCHHHHHHHHhcCCcEEeCcChhhHH-------------------------HHHHHHHHhhCCCeEEEEecC
Q 026546 101 VLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSK-------------------------VWTSVEKHKKGDYTSIIHGKY 153 (237)
Q Consensus 101 IirAHGv~~~v~~~l~~~g~~ivDaTCP~V~k-------------------------v~~~v~~~~~~Gy~ivIiG~~ 153 (237)
|.=+..++++.++.++++|+.++ +||.... ....++++.+.|-.+.+--|.
T Consensus 197 i~H~~~~~~~~~~~l~~~g~~~~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD~ 272 (342)
T cd01299 197 IEHGFLIDDETIELMKEKGIFLV--PTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDA 272 (342)
T ss_pred EeecCCCCHHHHHHHHHCCcEEe--CcHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 43233368999999999999885 8887532 234567888999877765443
No 115
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=36.54 E-value=2.3e+02 Score=23.48 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=27.5
Q ss_pred cCCcEEeCcChhhH--HHHHHHHHHhhCCCeEEEEecCCCcc
Q 026546 118 KNVQIVDTTCPWVS--KVWTSVEKHKKGDYTSIIHGKYSHEE 157 (237)
Q Consensus 118 ~g~~ivDaTCP~V~--kv~~~v~~~~~~Gy~ivIiG~~~HpE 157 (237)
..+-+++++|||++ -+.+.++.+.+.++..++--.+.++.
T Consensus 99 d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~ 140 (223)
T cd02513 99 DIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRF 140 (223)
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcC
Confidence 35778999999986 45667777766677666655444443
No 116
>PRK09875 putative hydrolase; Provisional
Probab=35.93 E-value=3.6e+02 Score=24.95 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=77.5
Q ss_pred hhHHHHHHHc--CCcceecceEE-EEeCCCC-CcccHHHHHHHHHHHHhhCCCCceEEecccc-cCHHHHHHHHhcCc--
Q 026546 7 SDIIKKLKEN--GFEYTWGNVKV-KLAESYG-FCWGVERAVQIAYEARKQFPEEKIWITNEII-HNPTVNKRLEEMAV-- 79 (237)
Q Consensus 7 s~~i~~~~~~--~~~~~~g~m~I-~lA~~~G-FC~GV~RAv~~a~~a~~~~~~~~vy~lgeiI-HN~~Vv~~L~~~Gv-- 79 (237)
..+|..|.+. ++....|- | .++...| +.--.++.++.|-++..+- +-||.+--+.= .=..+++-|++.|+
T Consensus 103 ~~~i~ei~~Gi~gt~ikaGv--IGeiG~~~~~it~~E~kvl~Aaa~a~~~T-G~pi~~Ht~~~~~g~e~l~il~e~Gvd~ 179 (292)
T PRK09875 103 QEMVDEIEQGIDGTELKAGI--IAEIGSSEGKITPLEEKVFIAAALAHNQT-GRPISTHTSFSTMGLEQLALLQAHGVDL 179 (292)
T ss_pred HHHHHHHHHhhccCCCcccE--EEEEecCCCCCCHHHHHHHHHHHHHHHHH-CCcEEEcCCCccchHHHHHHHHHcCcCc
Confidence 3455555553 34444443 4 4565554 7777888888887776654 35777652221 23356788888888
Q ss_pred -EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeC-----cChhhHHHHHHHHHHhhCCC--eEEEE
Q 026546 80 -QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDT-----TCPWVSKVWTSVEKHKKGDY--TSIIH 150 (237)
Q Consensus 80 -~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~i-vDa-----TCP~V~kv~~~v~~~~~~Gy--~ivIi 150 (237)
+++= .-. +. ..+++...++.++|+.+ .|+ -+|.- +.-+.++.+.++|| +|++-
T Consensus 180 ~rvvi--------~H~--d~-------~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~-~r~~~i~~L~~~Gy~drilLS 241 (292)
T PRK09875 180 SRVTV--------GHC--DL-------KDNLDNILKMIDLGAYVQFDTIGKNSYYPDE-KRIAMLHALRDRGLLNRVMLS 241 (292)
T ss_pred ceEEE--------eCC--CC-------CCCHHHHHHHHHcCCEEEeccCCCcccCCHH-HHHHHHHHHHhcCCCCeEEEe
Confidence 2221 111 00 15788999999999999 685 46765 44677788888885 56664
Q ss_pred ec
Q 026546 151 GK 152 (237)
Q Consensus 151 G~ 152 (237)
+|
T Consensus 242 ~D 243 (292)
T PRK09875 242 MD 243 (292)
T ss_pred CC
Confidence 44
No 117
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=35.88 E-value=2e+02 Score=25.97 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=47.9
Q ss_pred CceEEecccccCHHHH----HHHHhcCcEEecCCcc-c--cccccccCCCEE-EEcCCCCCHHHHH---HHHhcCCcEEe
Q 026546 56 EKIWITNEIIHNPTVN----KRLEEMAVQNIPVEEG-K--KQFDVVNKGDVV-VLPAFGAAVEEMV---TLNNKNVQIVD 124 (237)
Q Consensus 56 ~~vy~lgeiIHN~~Vv----~~L~~~Gv~~v~~~~~-~--~~~~~v~~g~~V-IirAHGv~~~v~~---~l~~~g~~ivD 124 (237)
++||..| +=-.--|- .+|...|+.+.--.+. . ..+..+.++|+| +|+--|-++++.+ .++++|.+||=
T Consensus 131 ~rI~~~G-~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIa 209 (281)
T COG1737 131 RRIYFFG-LGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIA 209 (281)
T ss_pred CeEEEEE-echhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEE
Confidence 4688777 33333332 3455567665432111 1 123455678875 5899999988765 55667888877
Q ss_pred CcChhhHHHHHHH
Q 026546 125 TTCPWVSKVWTSV 137 (237)
Q Consensus 125 aTCP~V~kv~~~v 137 (237)
=|..+.+-+-+.+
T Consensus 210 iT~~~~spla~~A 222 (281)
T COG1737 210 ITDSADSPLAKLA 222 (281)
T ss_pred EcCCCCCchhhhh
Confidence 7776666655444
No 118
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=35.30 E-value=68 Score=33.85 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=42.6
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccC-HHHHHHHHhcCcEEec
Q 026546 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHN-PTVNKRLEEMAVQNIP 83 (237)
Q Consensus 35 FC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN-~~Vv~~L~~~Gv~~v~ 83 (237)
+.-.|.+||+.+.++.++. ++++-+.|++..+ |.....|-.+|+.++.
T Consensus 723 ~hPav~~ai~~vi~aa~~~-g~~vgicge~a~~~p~~~~~l~~~G~~~ls 771 (795)
T PRK06464 723 RNPAVKKLISMAIKAAKKA-GKYVGICGQAPSDHPDFAEWLVEEGIDSIS 771 (795)
T ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEcCCCCCCcHHHHHHHHHCCCCEEE
Confidence 4568999999999888876 4799999999998 9999999999999885
No 119
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=35.27 E-value=1.4e+02 Score=27.74 Aligned_cols=90 Identities=21% Similarity=0.246 Sum_probs=51.0
Q ss_pred ceEEecccccCHHHHHHHHh----cCcEEecC-CccccccccccCCCEEEEcCCC--CCHHHHHHHHhcCCcEEeCcChh
Q 026546 57 KIWITNEIIHNPTVNKRLEE----MAVQNIPV-EEGKKQFDVVNKGDVVVLPAFG--AAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L~~----~Gv~~v~~-~~~~~~~~~v~~g~~VIirAHG--v~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
.|.+-| .|+.-.++|.+ ..+.++.- ..+.+++.++-.+.-|||.+=| ....+.+.+.+.|+..|| ||-+
T Consensus 25 ~v~va~---r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD-~~~~ 100 (386)
T PF03435_consen 25 EVTVAD---RNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYVD-TSYV 100 (386)
T ss_dssp EEEEEE---SSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEE-SS-H
T ss_pred cEEEEE---CCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCeec-cchh
Confidence 456655 56666666654 24444432 1111123333233335565544 467899999999999999 6666
Q ss_pred hHHHHHHHHHHhhCCCeEEEEe
Q 026546 130 VSKVWTSVEKHKKGDYTSIIHG 151 (237)
Q Consensus 130 V~kv~~~v~~~~~~Gy~ivIiG 151 (237)
.....+.-++..++|-+ +|+|
T Consensus 101 ~~~~~~l~~~a~~~g~~-~l~~ 121 (386)
T PF03435_consen 101 TEEMLALDEEAKEAGVT-ALPG 121 (386)
T ss_dssp HHHHHHCHHHHHHTTSE-EE-S
T ss_pred HHHHHHHHHHHHhhCCE-EEeC
Confidence 77777666666677754 4444
No 120
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=34.94 E-value=3e+02 Score=24.84 Aligned_cols=91 Identities=10% Similarity=0.061 Sum_probs=47.8
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH-------
Q 026546 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL------- 115 (237)
Q Consensus 44 ~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v-~~g~~VIirAHGv~~~v~~~l------- 115 (237)
.++...++. +-+|++.. .|+...+.|.+.|+....+ ..++ .+-|+||+--- -+..+..-+
T Consensus 15 ~mA~~l~~~--G~~V~v~d---~~~~~~~~~~~~g~~~~~s------~~~~~~~aDvVi~~vp-~~~~~~~vl~~~~~i~ 82 (296)
T PRK15461 15 PMASNLLKQ--GHQLQVFD---VNPQAVDALVDKGATPAAS------PAQAAAGAEFVITMLP-NGDLVRSVLFGENGVC 82 (296)
T ss_pred HHHHHHHHC--CCeEEEEc---CCHHHHHHHHHcCCcccCC------HHHHHhcCCEEEEecC-CHHHHHHHHcCcccHh
Confidence 344444443 13566654 4778888888888765543 2222 23354443321 111122111
Q ss_pred --HhcCCcEEeCcChhhHHHHHHHHHHhhCCCe
Q 026546 116 --NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146 (237)
Q Consensus 116 --~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ 146 (237)
..+|..+||++--......+.++.+.++|..
T Consensus 83 ~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 83 EGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 1345667777777766666666666666544
No 121
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=34.93 E-value=64 Score=29.10 Aligned_cols=78 Identities=15% Similarity=0.107 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHh--hCCCCceEEecccccCHHHHHHHHhcCcEE--ecCCcccccccc-----ccCCCEEEEcCCCCCHH
Q 026546 40 ERAVQIAYEARK--QFPEEKIWITNEIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDV-----VNKGDVVVLPAFGAAVE 110 (237)
Q Consensus 40 ~RAv~~a~~a~~--~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~--v~~~~~~~~~~~-----v~~g~~VIirAHGv~~~ 110 (237)
.+||+......+ ...+.++|..|+ .--+.|++.|+.. +++..+.+.|-+ .+.+.++|+|+.|-.+.
T Consensus 78 ~NAV~~~~~~~~~~~~~~~~~~AVG~-----~TA~aL~~~G~~~~~~P~~~~se~Ll~l~~~~~~g~~vLi~rg~~gr~~ 152 (266)
T PRK08811 78 PAAVRAAHRLLPLQRPARAHWLSVGE-----GTARALQACGIDEVVRPTRMDSEGLLALPLAQAPLQAVGLITAPGGRGL 152 (266)
T ss_pred HHHHHHHHHHhcccCccCCeEEEECH-----HHHHHHHHcCCCceeCCCCCCcHHHHhChhhhCCCCEEEEEeCCCcHHH
Confidence 455555443222 112347888885 4558899999853 333222222222 22234577999999999
Q ss_pred HHHHHHhcCCcE
Q 026546 111 EMVTLNNKNVQI 122 (237)
Q Consensus 111 v~~~l~~~g~~i 122 (237)
..+.|.++|..|
T Consensus 153 L~~~L~~~G~~V 164 (266)
T PRK08811 153 LAPTLQQRGARI 164 (266)
T ss_pred HHHHHHHCCCEE
Confidence 999999999777
No 122
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=34.84 E-value=3.3e+02 Score=25.38 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=44.2
Q ss_pred EEEe-CCCC-CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecC
Q 026546 27 VKLA-ESYG-FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (237)
Q Consensus 27 I~lA-~~~G-FC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~ 84 (237)
++++ -||| |-.+.+.|++-|.+..++-+..-|++-|- .+--..+++|.++||.+.-.
T Consensus 78 ~vv~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG-~~~~~~i~~L~~~gIPV~gH 136 (268)
T COG0413 78 FVVADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGG-EEMAETIKRLTERGIPVMGH 136 (268)
T ss_pred eEEeCCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCC-HHHHHHHHHHHHcCCceEEE
Confidence 3444 4777 66789999999999888644456888886 56677889999999998854
No 123
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=34.78 E-value=3.2e+02 Score=26.20 Aligned_cols=105 Identities=10% Similarity=0.144 Sum_probs=58.2
Q ss_pred ceEEEEeCCCCCcc----cHHHHHHHHHHHHhhC--CCCceEEecccccC--HHHHHHHHhcCcEEecCCcc--cccccc
Q 026546 24 NVKVKLAESYGFCW----GVERAVQIAYEARKQF--PEEKIWITNEIIHN--PTVNKRLEEMAVQNIPVEEG--KKQFDV 93 (237)
Q Consensus 24 ~m~I~lA~~~GFC~----GV~RAv~~a~~a~~~~--~~~~vy~lgeiIHN--~~Vv~~L~~~Gv~~v~~~~~--~~~~~~ 93 (237)
+..|+-+..-||.. |.+.|++...+...+. ..+.|-+.|++--. .++..-|+++|+.++.-..+ ..++..
T Consensus 129 ~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~~~~~d~~~ 208 (427)
T PRK02842 129 GVPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPARRFTELPA 208 (427)
T ss_pred CCeEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCCccHHHHhh
Confidence 35788888999853 3555555444333321 12468888984222 33666778999986522111 123333
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChh
Q 026546 94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 94 v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
.+.+..++. .+......-+.|+++|...+-..-|+
T Consensus 209 ~~~~~~~~~-~~~~~~~~A~~L~~~GiP~~~~~~P~ 243 (427)
T PRK02842 209 IGPGTVVAL-AQPFLSDTARALRERGAKVLTAPFPL 243 (427)
T ss_pred cCcCcEEEE-eCHHHHHHHHHHHHcCCccccCCCCc
Confidence 333444432 22222246667788898887666654
No 124
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=34.69 E-value=3e+02 Score=26.90 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=31.4
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~ 83 (237)
+++.......||..+.+|.+ +....+|.=..-+. +.-|+|+..+++ ++.-|+
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~---~~a~~~~~i~~~~i-d~~~~~~~~~~~---~v~~VP 171 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALN---LMAVLNPNITHTMI-DGALFQDEVEAR---NIMAVP 171 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHH---HHHHhCCCceEEEE-EchhCHhHHHhc---CCcccC
Confidence 67899999999987766664 43333442112222 555777666654 555554
No 125
>PRK12310 hydroxylamine reductase; Provisional
Probab=34.48 E-value=48 Score=32.69 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=41.8
Q ss_pred CceEEecccccCHHHHHHHHh----cCcEEecCCccccccccccCCCEEEEcCCCCCH-----------------HHHHH
Q 026546 56 EKIWITNEIIHNPTVNKRLEE----MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV-----------------EEMVT 114 (237)
Q Consensus 56 ~~vy~lgeiIHN~~Vv~~L~~----~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~-----------------~v~~~ 114 (237)
..|.+.| |||...+.|-+ +||.+.. .+. ++++||+|. +..+.
T Consensus 125 ~nIlV~G---Hd~~~~e~ll~q~ga~GInvyT------------~~E--mL~~hg~p~l~k~~hl~Gn~g~aw~~Qe~ef 187 (433)
T PRK12310 125 KAILVTG---HNLKALEELLKQTEGKGINVYT------------HSE--MLPAHGYPELKKYKHLKGNIGKAWYDQRKLF 187 (433)
T ss_pred CEEEEEC---CChHHHHHHHHHhcCCCeEEEe------------Ccc--hHhhccCccccccCccccCchhHHHhhHHHH
Confidence 3578888 99999888843 5666653 234 577999998 22334
Q ss_pred HHhcCCcEEeCcChhhHH
Q 026546 115 LNNKNVQIVDTTCPWVSK 132 (237)
Q Consensus 115 l~~~g~~ivDaTCP~V~k 132 (237)
+.--|..++|+-|-+-.+
T Consensus 188 ~~~tGaiv~~~nCi~p~~ 205 (433)
T PRK12310 188 EKFPGAILGTTNCVMPPK 205 (433)
T ss_pred HhCCCCEEEeccCCCCCh
Confidence 555799999999955443
No 126
>PRK00441 argR arginine repressor; Provisional
Probab=34.43 E-value=2.7e+02 Score=23.18 Aligned_cols=31 Identities=10% Similarity=0.204 Sum_probs=21.5
Q ss_pred CCcceeeeccccCeeEEE-cChhhHHhhhhhh
Q 026546 154 SHEETVATASFAGKYIIV-KNMKEAEYVCDYI 184 (237)
Q Consensus 154 ~HpEv~g~~g~a~~~~vv-~~~~e~~~~~~~~ 184 (237)
++||+.||.+=-+..+|+ ++.++++.+++.+
T Consensus 113 ~~~eI~GTiAGdDTilvi~~~~~~a~~l~~~l 144 (149)
T PRK00441 113 NFDGIAGTIAGDNTIFVLVRSEEKAQEIVEKI 144 (149)
T ss_pred CCCCeEEEEecCCEEEEEECCHHHHHHHHHHH
Confidence 569999998644455444 8888887776444
No 127
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=34.14 E-value=23 Score=30.59 Aligned_cols=14 Identities=50% Similarity=0.759 Sum_probs=12.4
Q ss_pred cCCCEEEEcCCCCC
Q 026546 95 NKGDVVVLPAFGAA 108 (237)
Q Consensus 95 ~~g~~VIirAHGv~ 108 (237)
..||.||.|+||+.
T Consensus 6 k~Gd~VVYP~HGvG 19 (166)
T COG1329 6 KIGDHVVYPAHGVG 19 (166)
T ss_pred cCCCEEEecCCCce
Confidence 45999999999996
No 128
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=34.10 E-value=3.8e+02 Score=24.73 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=57.2
Q ss_pred ceEEEEeCCCCCcc----cHHHHHHHHHHHHhh----C--CCCceEEeccccc---C-HHHHHHHHhcCcEEecCCcc--
Q 026546 24 NVKVKLAESYGFCW----GVERAVQIAYEARKQ----F--PEEKIWITNEIIH---N-PTVNKRLEEMAVQNIPVEEG-- 87 (237)
Q Consensus 24 ~m~I~lA~~~GFC~----GV~RAv~~a~~a~~~----~--~~~~vy~lgeiIH---N-~~Vv~~L~~~Gv~~v~~~~~-- 87 (237)
+..|+....-||.. |...|.....+.... . ..+.|=++|..-= | ..+.+-|+++|+.++.-...
T Consensus 111 ~~~vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~ 190 (399)
T cd00316 111 GIPVVPASTPGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGT 190 (399)
T ss_pred CCceEEeeCCCCcccHHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCC
Confidence 45677778888884 555555555444322 1 1235888886532 3 45566679999998654322
Q ss_pred -ccccccccCCC-EEEEcC-CCCCHHHHHHHHhc-CCcEEeCcChh
Q 026546 88 -KKQFDVVNKGD-VVVLPA-FGAAVEEMVTLNNK-NVQIVDTTCPW 129 (237)
Q Consensus 88 -~~~~~~v~~g~-~VIirA-HGv~~~v~~~l~~~-g~~ivDaTCP~ 129 (237)
.+++..+++-. .+++.. +|. ..-+.|+++ |...+-.. |+
T Consensus 191 s~~~i~~~~~A~~nlv~~~~~g~--~~a~~l~~~~g~p~~~~~-p~ 233 (399)
T cd00316 191 TVEELRELGNAKLNLVLCRESGL--YLARYLEEKYGIPYILIN-PI 233 (399)
T ss_pred CHHHHHhhccCcEEEEecHhHHH--HHHHHHHHHhCCCeEEeC-Cc
Confidence 23344444332 344444 554 445556655 77776543 44
No 129
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=34.05 E-value=3.2e+02 Score=24.40 Aligned_cols=81 Identities=9% Similarity=0.049 Sum_probs=50.2
Q ss_pred ceEEec--ccccCHH---HHHHHHhcCcEEecCCccc---ccccccc-CCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcC
Q 026546 57 KIWITN--EIIHNPT---VNKRLEEMAVQNIPVEEGK---KQFDVVN-KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (237)
Q Consensus 57 ~vy~lg--eiIHN~~---Vv~~L~~~Gv~~v~~~~~~---~~~~~v~-~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTC 127 (237)
.|...| |+.|-+. +++.++++|+.+.=..+|. +.++++. .-|.+.|+-+|.+++.++++.. .
T Consensus 128 ~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g--~------- 198 (295)
T TIGR02494 128 GVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPYVDLFLFDIKHLDDERHKEVTG--V------- 198 (295)
T ss_pred cEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhhCCEEEEeeccCChHHHHHHhC--C-------
Confidence 355555 6666553 4678888997543333331 2233332 2567889999999999887743 2
Q ss_pred hhhHHHHHHHHHHhhCCCeE
Q 026546 128 PWVSKVWTSVEKHKKGDYTS 147 (237)
Q Consensus 128 P~V~kv~~~v~~~~~~Gy~i 147 (237)
...++.+-++.+.+.|..+
T Consensus 199 -~~~~vl~~i~~l~~~~~~~ 217 (295)
T TIGR02494 199 -DNEPILENLEALAAAGKNV 217 (295)
T ss_pred -ChHHHHHHHHHHHhCCCcE
Confidence 1266777777787777543
No 130
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=33.72 E-value=1.5e+02 Score=25.62 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=53.8
Q ss_pred HHHHHHHhcCcEEecCCccc---------------cccccccCCCEEEEcCCCC-CHH-HHHHHHhcCCcEEeCcChhhH
Q 026546 69 TVNKRLEEMAVQNIPVEEGK---------------KQFDVVNKGDVVVLPAFGA-AVE-EMVTLNNKNVQIVDTTCPWVS 131 (237)
Q Consensus 69 ~Vv~~L~~~Gv~~v~~~~~~---------------~~~~~v~~g~~VIirAHGv-~~~-v~~~l~~~g~~ivDaTCP~V~ 131 (237)
+++++|.++|+..-...... .....+ ....|-++.||. +.+ ....|...|+.++.
T Consensus 63 ~~L~~L~~~G~l~~~~~~~~~~~~~f~~~~g~~~~~a~~~l-~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------- 134 (193)
T TIGR03882 63 YALDRLERRGYLVEDAPELPPAAAAFWSGLGVDPAAALERL-RQLTVTVLSFGEGGAAALAAALAAAGIRIAP------- 134 (193)
T ss_pred HHHHHHHHCCCEeccCCCCCHHHHHHHHHcCCCHHHHHHHH-hcCcEEEEecCCCcHHHHHHHHHHcCCCccC-------
Confidence 67889999998864321000 000111 134688899995 556 88889999999986
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCcceeeecccc
Q 026546 132 KVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA 165 (237)
Q Consensus 132 kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a 165 (237)
.+.+-++|+-=++-+||..++.-++
T Consensus 135 ---------~~a~l~vVl~~Dyl~p~L~~~n~~~ 159 (193)
T TIGR03882 135 ---------SEADLTVVLTDDYLDPELAAINQRA 159 (193)
T ss_pred ---------CCCCEEEEEeCCCCChHHHHHHHHH
Confidence 3356788888888899988875443
No 131
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.42 E-value=4e+02 Score=24.87 Aligned_cols=101 Identities=7% Similarity=0.010 Sum_probs=68.8
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec--CCc--ccc-ccccccCCC
Q 026546 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEE--GKK-QFDVVNKGD 98 (237)
Q Consensus 24 ~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~--~~~--~~~-~~~~v~~g~ 98 (237)
+|-.+..+|.-||-|+..||+.+.+... + .++|-+-- .|.......-+.|+-.+. +-+ ..+ -.+-+ .+.
T Consensus 168 D~iLIkdNHi~~~g~i~~av~~~r~~~~-~-~~kIeVEv---~tleea~~a~~agaDiImLDnmspe~l~~av~~~-~~~ 241 (290)
T PRK06559 168 DAIMLKDNHIAAVGSVQKAIAQARAYAP-F-VKMVEVEV---ESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLI-AGR 241 (290)
T ss_pred ceEEEcHHHHHhhccHHHHHHHHHHhCC-C-CCeEEEEC---CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh-cCc
Confidence 4667778898899899999998876553 1 24676664 466555666667776654 211 011 11112 345
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcChhh
Q 026546 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV 130 (237)
Q Consensus 99 ~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V 130 (237)
+.+--|=|++++-.....+-|+.+|.+.+|+-
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEEeCcccc
Confidence 66777779999999999999999999988764
No 132
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=32.99 E-value=69 Score=31.71 Aligned_cols=67 Identities=12% Similarity=0.214 Sum_probs=48.5
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc-CeeEEE
Q 026546 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIV 171 (237)
Q Consensus 97 g~~VIirAHGv~~~v~~~l~~~g~~i--vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a-~~~~vv 171 (237)
+.+||+-+--+...+.+.|+++|..+ ||.- .++++++.+.|+. +++||..+||+---.|-. .+.+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d-------~~~~~~~~~~g~~-~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETS-------RTRVDELRERGIR-AVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHCCCe-EEEcCCCCHHHHHhcCccccCEEEE
Confidence 56788888888999999999988655 6653 3455666677875 789999999987555532 234444
No 133
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=32.94 E-value=4.5e+02 Score=25.24 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=36.5
Q ss_pred cceEEEEeCCCCCc----ccHHHHHHHHHHHHhhC--CCCceEEeccccc---CHHHHHHHHhcCcEEe
Q 026546 23 GNVKVKLAESYGFC----WGVERAVQIAYEARKQF--PEEKIWITNEIIH---NPTVNKRLEEMAVQNI 82 (237)
Q Consensus 23 g~m~I~lA~~~GFC----~GV~RAv~~a~~a~~~~--~~~~vy~lgeiIH---N~~Vv~~L~~~Gv~~v 82 (237)
.+..|+-...-||. .|-++|++...+..... +...|=++|.... .....+-|+++|+.++
T Consensus 117 ~~~~vi~v~t~gF~g~~~~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~~ 185 (429)
T cd03466 117 SEPKIIPASTPGYGGTHVEGYDTAVRSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEYI 185 (429)
T ss_pred CCCcEEEEECCCCcccHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCeE
Confidence 34678888888997 45555555444332211 1235888875422 2455566789999975
No 134
>PRK10329 glutaredoxin-like protein; Provisional
Probab=32.83 E-value=2e+02 Score=21.09 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=48.6
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA 104 (237)
++++-....+||..++++++. . +-=|..-++=.+|...+.|+..|...++.. --|+.++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~~~~~~~g~~~vPvv---------~i~~~~~~-- 62 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAAETLRAQGFRQLPVV---------IAGDLSWS-- 62 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHHHHHHHcCCCCcCEE---------EECCEEEe--
Confidence 566777889999999988842 1 233555577778989998988887666531 12443433
Q ss_pred CCCCHHHHHHHH
Q 026546 105 FGAAVEEMVTLN 116 (237)
Q Consensus 105 HGv~~~v~~~l~ 116 (237)
|..++.+++|.
T Consensus 63 -Gf~~~~l~~~~ 73 (81)
T PRK10329 63 -GFRPDMINRLH 73 (81)
T ss_pred -cCCHHHHHHHH
Confidence 88888888774
No 135
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=32.58 E-value=2.6e+02 Score=24.21 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCcEEeCcC------hhhHHHHHHHHHHhhC
Q 026546 109 VEEMVTLNNKNVQIVDTTC------PWVSKVWTSVEKHKKG 143 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDaTC------P~V~kv~~~v~~~~~~ 143 (237)
..+.+.|+++|+.|+|-.| .|..-.++.++...+.
T Consensus 16 ~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g 56 (171)
T TIGR01119 16 MEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSG 56 (171)
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcC
Confidence 4678899999999999665 5766666666666443
No 136
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=32.46 E-value=4.4e+02 Score=25.01 Aligned_cols=122 Identities=15% Similarity=0.165 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCc--cccccccccCCCEEEE--cCCCCCHHHHH
Q 026546 38 GVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE--GKKQFDVVNKGDVVVL--PAFGAAVEEMV 113 (237)
Q Consensus 38 GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~--~~~~~~~v~~g~~VIi--rAHGv~~~v~~ 113 (237)
.+.|..++++.+.+ + +++||+.|.-. .++.+-+++.|..-.+... ..+++...|++..||+ ...|-|-..+.
T Consensus 229 ~~~R~~~i~~~a~~-~-~r~v~v~g~~~--~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~vii~tg~~g~~~~~l~ 304 (422)
T TIGR00649 229 NIHRVQQLIQIARK-Q-GRKFAVYGRSM--EHLFGIARRLGLIKNPHNNFISLKEVNNSPDENYLIITTGSQGEPYAALT 304 (422)
T ss_pred cHHHHHHHHHHHHH-h-CCEEEEECccH--HHHHHHHHHcCCccCCccceeCHHHHhcCCcccEEEEEeCCCCcHHHHHH
Confidence 38888877775555 4 36899998544 3455666667755432211 1124455554555555 35777777776
Q ss_pred HHHh---------cCCcEEeCcChhh----HHHHHHHH-HHhhCCCeEE----EEecCCCcceeeecc
Q 026546 114 TLNN---------KNVQIVDTTCPWV----SKVWTSVE-KHKKGDYTSI----IHGKYSHEETVATAS 163 (237)
Q Consensus 114 ~l~~---------~g~~ivDaTCP~V----~kv~~~v~-~~~~~Gy~iv----IiG~~~HpEv~g~~g 163 (237)
++.. +|-.||=++.|+= ..+..... .+.+.|-++. .-||+..+|.+-+..
T Consensus 305 ~~~~~~~~~i~l~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~~~i~ 372 (422)
T TIGR00649 305 RIANNEHEQIRIRKGDTVVFSAPPIPGNENIAVSILLDIRLNEVGARVIKRIHVSGHASQEDHKLLLR 372 (422)
T ss_pred HHhCCCCCcEEeCCCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHHHHHHHH
Confidence 6654 3334544555553 23344444 5667777653 234444444444433
No 137
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=32.41 E-value=3e+02 Score=23.03 Aligned_cols=108 Identities=17% Similarity=0.248 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCcEEeCcC----hhhHHHHHHHHHHhhC--CCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHhh-
Q 026546 109 VEEMVTLNNKNVQIVDTTC----PWVSKVWTSVEKHKKG--DYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYV- 180 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDaTC----P~V~kv~~~v~~~~~~--Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~~- 180 (237)
..+.+.|+++|+.|+|-.| .|..-.++.++...+. .+-|+|=| .+---.++..=+.+ .+-++.|+..++.-
T Consensus 16 ~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~~~GIliCG-tGiG~siaANK~~GIRAA~~~d~~~A~~ar 94 (141)
T TIGR01118 16 DVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNLGIVIDA-YGAGSFMVATKIKGMIAAEVSDERSAYMTR 94 (141)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcC-CCHhHhhhhhcCCCeEEEEECCHHHHHHHH
Confidence 4668899999999999876 4444445555544332 23344444 22111111111111 23455666555442
Q ss_pred ----hhhhc-CCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceE
Q 026546 181 ----CDYIL-GGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVG 221 (237)
Q Consensus 181 ----~~~~~-~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~ 221 (237)
++.+. +..+++ .....++++.| ++..|+..++.+||.
T Consensus 95 ~hNnaNVL~lG~r~~g-~~~a~~iv~~f---L~t~f~ggrh~~Rv~ 136 (141)
T TIGR01118 95 GHNNARMITVGAEIVG-DELAKNIVKAF---VEGKYDGGRHQIRVD 136 (141)
T ss_pred HHcCCcEEEECccccC-HHHHHHHHHHH---HcCCCCCccHHHHHH
Confidence 22222 222221 13334555555 667777666666653
No 138
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.39 E-value=77 Score=24.75 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=36.8
Q ss_pred CCCEEEEcCC--C----CCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCe-EEEEecCC
Q 026546 96 KGDVVVLPAF--G----AAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (237)
Q Consensus 96 ~g~~VIirAH--G----v~~~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~~~~~Gy~-ivIiG~~~ 154 (237)
+-+++|++.. . ...++.+.|++.|+.+ +|-. .++.++.++..+.|+. ++|+|+..
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~----~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS----GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC----CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 3455666643 2 2245677888889888 5654 5777777777888987 77778654
No 139
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=32.39 E-value=2.6e+02 Score=23.40 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCcEEeCcC------hhhHHHHHHHHHHhh
Q 026546 109 VEEMVTLNNKNVQIVDTTC------PWVSKVWTSVEKHKK 142 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDaTC------P~V~kv~~~v~~~~~ 142 (237)
..+.+.|+++|..|+|-.| .|..-.++.++...+
T Consensus 14 ~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~ 53 (144)
T TIGR00689 14 SEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVA 53 (144)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc
Confidence 4678899999999999765 677666666666644
No 140
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=32.32 E-value=4.5e+02 Score=25.07 Aligned_cols=141 Identities=14% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHH------hhCCC-CceEEecccccCH----HHHHHHH
Q 026546 7 SDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEAR------KQFPE-EKIWITNEIIHNP----TVNKRLE 75 (237)
Q Consensus 7 s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~------~~~~~-~~vy~lgeiIHN~----~Vv~~L~ 75 (237)
..++.++++. -+..|+-+..-||..+...+.+.+.+++ ....+ +.+-+.|+ +|| ++..-|+
T Consensus 104 ~~v~~~~~~~------~~~pVi~v~tpgf~g~~~~G~~~~~~alv~~~~~~~~~~~~~vniiG~--~~~~d~~elk~lL~ 175 (407)
T TIGR01279 104 EGLAERLSTN------FGVPVLFAPASGLDYTFTQGEDTVLAALVPFCPEAPASEQRALVLVGS--VNDIVADQLRLELK 175 (407)
T ss_pred HHHHHHHHHh------hCCCEEEeeCCCccccHHHHHHHHHHHHHHhhccccCCCCCcEEEEec--cChhhHHHHHHHHH
Q ss_pred hcCcEEecCCccccccccccC--CCEEEEcCCCCCHHHHHHHHh-cCCcEEeCcChh-hHHHHHHHHHHhh---------
Q 026546 76 EMAVQNIPVEEGKKQFDVVNK--GDVVVLPAFGAAVEEMVTLNN-KNVQIVDTTCPW-VSKVWTSVEKHKK--------- 142 (237)
Q Consensus 76 ~~Gv~~v~~~~~~~~~~~v~~--g~~VIirAHGv~~~v~~~l~~-~g~~ivDaTCP~-V~kv~~~v~~~~~--------- 142 (237)
++|+.++.-..+. ++++++. +...+..-+......-+.|++ .|+..+....|+ ++..-+-.+++++
T Consensus 176 ~~Gi~v~~~lpd~-~~~e~~~~~~~~~~~~~~~~~~~~A~~Le~~~GiP~~~~~~PiGi~~T~~~l~~la~~~g~~~~~~ 254 (407)
T TIGR01279 176 QLGIPVVGFLPAS-HFTELPVIGPGTVVAPLQPYLSDTATTLRRERGAKVLSAPFPFGPDGTRRFLEAIAAEFGIEVDKL 254 (407)
T ss_pred HcCCeEEEEeCCC-CcchhhhcCCCeEEEEechHHHHHHHHHHHHhCCccccCCCCcCHHHHHHHHHHHHHHhCcCHHHH
Q ss_pred ------------------CCCeEEEEecCCCc
Q 026546 143 ------------------GDYTSIIHGKYSHE 156 (237)
Q Consensus 143 ------------------~Gy~ivIiG~~~Hp 156 (237)
.|.++.|+|+..+.
T Consensus 255 ~~e~~~~~~~l~~~~~~l~Gkrv~i~gd~~~~ 286 (407)
T TIGR01279 255 SEREAQAWRALEPHTQLLRGKKIFFFGDNLLE 286 (407)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEECCchHH
No 141
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=32.13 E-value=51 Score=29.30 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=45.1
Q ss_pred ccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHh-hCCCeEEEEecCCCcceeeeccc
Q 026546 92 DVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHK-KGDYTSIIHGKYSHEETVATASF 164 (237)
Q Consensus 92 ~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~-~~Gy~ivIiG~~~HpEv~g~~g~ 164 (237)
+-+++||+|.|-+=-......+.|.++++.|| ++-...+..+. ..+.+++++|-.-+|+..++.|.
T Consensus 89 ~lI~~gd~Ifld~GtT~~~l~~~L~~~~ltVv-------TNs~~ia~~l~~~~~~~vil~GG~~~~~~~~~~G~ 155 (240)
T PRK10411 89 AWIEEGMVIALDASSTCWYLARQLPDINIQVF-------TNSHPICQELGKRERIQLISSGGTLERKYGCYVNP 155 (240)
T ss_pred HhCCCCCEEEEcCcHHHHHHHHhhCCCCeEEE-------eCCHHHHHHHhcCCCCEEEEECCEEeCCCCceECH
Confidence 44567997777664444566666766677777 33344445555 46789999998888888888764
No 142
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.98 E-value=2.7e+02 Score=25.68 Aligned_cols=100 Identities=10% Similarity=0.122 Sum_probs=63.2
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCc-cccccc---cccCCCE
Q 026546 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE-GKKQFD---VVNKGDV 99 (237)
Q Consensus 24 ~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~-~~~~~~---~v~~g~~ 99 (237)
++-.+-.+|.-||-|+..|+..+.+. .|+.+| +==+||........+.|+-++.-.+ +.+++. +...+.+
T Consensus 161 d~ilikdnHi~~~g~v~~av~~~r~~---~~~~~I---~VEv~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~~~~i 234 (277)
T PRK05742 161 DAFLIKENHIAACGGIAQAVAAAHRI---APGKPV---EVEVESLDELRQALAAGADIVMLDELSLDDMREAVRLTAGRA 234 (277)
T ss_pred ccEEecHHHHHHhCCHHHHHHHHHHh---CCCCeE---EEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCC
Confidence 46667889999999999998777653 233333 3337998887777778876664210 111111 1111344
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCcChh
Q 026546 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 100 VIirAHGv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
.++-+=|++++-...+.+.|+.+|-+.+++
T Consensus 235 ~leAsGGIt~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 235 KLEASGGINESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred cEEEECCCCHHHHHHHHHcCCCEEEEChhh
Confidence 455555888888878878888887776654
No 143
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=31.77 E-value=3.1e+02 Score=22.98 Aligned_cols=108 Identities=17% Similarity=0.239 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCcEEeCcC----hhhHHHHHHHHHHhhC--CCeEEEEecCCCcceeeeccccC-eeEEEcChhhHHhh-
Q 026546 109 VEEMVTLNNKNVQIVDTTC----PWVSKVWTSVEKHKKG--DYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYV- 180 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDaTC----P~V~kv~~~v~~~~~~--Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~~- 180 (237)
..+.+.|+++|+.|+|-.| .|-.-.++.++...+. .+-|+|=|- +=-.-++..=+.+ .+-++.|...++.-
T Consensus 16 ~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGT-GiG~siaANK~~GIRAA~~~d~~~A~~ar 94 (142)
T PRK08621 16 EVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAY-GAGSFMVATKIKGMVAAEVSDERSAYMTR 94 (142)
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCC-ChhhhhhhhcCCCeEEEEECCHHHHHHHH
Confidence 4568899999999999887 4555555555555332 234444442 1100000000001 23556666666543
Q ss_pred ----hhhhc-CCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceE
Q 026546 181 ----CDYIL-GGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVG 221 (237)
Q Consensus 181 ----~~~~~-~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~ 221 (237)
++.+. +..+.+ +....++++.| ++..|+..++..||.
T Consensus 95 ~hNnaNVL~lG~r~ig-~~~a~~iv~~f---L~t~f~ggrh~~Rv~ 136 (142)
T PRK08621 95 GHNNARMITMGSEIVG-DGLAKNIIKGF---VEGKYDGGRHQIRVD 136 (142)
T ss_pred HHcCCcEEEECccccC-HHHHHHHHHHH---HcCCCCCccHHHHHH
Confidence 23222 222221 23344555555 667787667766654
No 144
>PRK10537 voltage-gated potassium channel; Provisional
Probab=31.69 E-value=1.1e+02 Score=29.56 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=49.2
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc-CeeEEEc
Q 026546 96 KGDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIVK 172 (237)
Q Consensus 96 ~g~~VIirAHGv~~~v~~~l~~~g~~i--vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a-~~~~vv~ 172 (237)
++-+||+-.--+...+.++|+++|..+ ||.- ..++..++|+. ++.||+.++|+---.|-. .+.+++.
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d---------~~~~~~~~g~~-vI~GD~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL---------GLEHRLPDDAD-LIPGDSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc---------hhhhhccCCCc-EEEeCCCCHHHHHhcCcccCCEEEEc
Confidence 355677888888899999999888654 6632 23455567776 689999999987555532 2455554
Q ss_pred ChhhHHh
Q 026546 173 NMKEAEY 179 (237)
Q Consensus 173 ~~~e~~~ 179 (237)
..+|.+.
T Consensus 310 t~dD~~N 316 (393)
T PRK10537 310 RDNDADN 316 (393)
T ss_pred CCChHHH
Confidence 4444433
No 145
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=31.57 E-value=78 Score=29.66 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=32.1
Q ss_pred HHHhcCCcEEeCc----------ChhhHHHHHHHHHHhhCCCeEEEEec
Q 026546 114 TLNNKNVQIVDTT----------CPWVSKVWTSVEKHKKGDYTSIIHGK 152 (237)
Q Consensus 114 ~l~~~g~~ivDaT----------CP~V~kv~~~v~~~~~~Gy~ivIiG~ 152 (237)
.+++.|+.+||.| ||-...+.+.++.+.++||-+++.|+
T Consensus 114 iiR~~GvplV~G~IPGva~ivG~a~~~e~~~~I~~e~q~r~~lv~l~G~ 162 (287)
T cd01917 114 IVRGLGIKMVDWTIPGEAVILGRAKDSKALKKIVDDLMGRGFMLFLCDE 162 (287)
T ss_pred HHHHcCCceecCCCCeEEEEEecCCChHHHHHHHHHHHHCCcEEEEecH
Confidence 4456777788776 45678999999999999999999993
No 146
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=31.31 E-value=3.5e+02 Score=23.45 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=37.2
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccCeeEEEc
Q 026546 94 VNKGDVV-VLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVK 172 (237)
Q Consensus 94 v~~g~~V-IirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~ 172 (237)
..+||++ +|+.=|-++++.+.+ +...+.|-++|.+-...+.......+.++-.+.+.
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~a~----------------------~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip 164 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVKAV----------------------EAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIP 164 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHH----------------------HHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcC
Confidence 3568875 588889998887665 33445676666666666655555555555555554
Q ss_pred C
Q 026546 173 N 173 (237)
Q Consensus 173 ~ 173 (237)
+
T Consensus 165 ~ 165 (196)
T PRK10886 165 S 165 (196)
T ss_pred C
Confidence 3
No 147
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=31.24 E-value=4.3e+02 Score=24.47 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=44.1
Q ss_pred hHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEec--cc--------ccCHHHHHHHHhc
Q 026546 8 DIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITN--EI--------IHNPTVNKRLEEM 77 (237)
Q Consensus 8 ~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lg--ei--------IHN~~Vv~~L~~~ 77 (237)
++++.+++. ...|--+|.+.....+-...++..+++....+.+++-.+..+. ++ +=++++.++|++.
T Consensus 74 eI~e~~~~~---~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeA 150 (343)
T TIGR03551 74 EIAERAAEA---WKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEA 150 (343)
T ss_pred HHHHHHHHH---HHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 455555543 3345566777643334457788888888777766543443322 11 1147888999998
Q ss_pred CcEEec
Q 026546 78 AVQNIP 83 (237)
Q Consensus 78 Gv~~v~ 83 (237)
|+..+.
T Consensus 151 Gl~~i~ 156 (343)
T TIGR03551 151 GLDSMP 156 (343)
T ss_pred Cccccc
Confidence 987664
No 148
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=31.02 E-value=1.6e+02 Score=25.64 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=37.0
Q ss_pred cCHHHHHHHHhcCcEEecC--Cccccccc----cccCCCEEEEc--CCCCCHHHHHHHHhcCCcEEe
Q 026546 66 HNPTVNKRLEEMAVQNIPV--EEGKKQFD----VVNKGDVVVLP--AFGAAVEEMVTLNNKNVQIVD 124 (237)
Q Consensus 66 HN~~Vv~~L~~~Gv~~v~~--~~~~~~~~----~v~~g~~VIir--AHGv~~~v~~~l~~~g~~ivD 124 (237)
+.+.+.+.|+++|+.+.-- .+..-.++ +..+-|.||+| .|+........++..|+.++.
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n 77 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVIN 77 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEEC
Confidence 4678889999999886521 00000111 22234788888 666555666677888999886
No 149
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=30.91 E-value=2.2e+02 Score=23.61 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=39.8
Q ss_pred CCceEEecccccCHHHHHHHHhcCcEEecC--Ccccc----cccc--ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEe
Q 026546 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPV--EEGKK----QFDV--VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD 124 (237)
Q Consensus 55 ~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~--~~~~~----~~~~--v~~g~~VIirAHGv~~~v~~~l~~~g~~ivD 124 (237)
+.++|+.|+ ..-+.|++.|+...-. ....+ .+.. .....+++++.-+......+.|+++|..++-
T Consensus 78 ~~~~~avG~-----~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~ 150 (239)
T cd06578 78 GLKIAAVGP-----KTAEALREAGLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDE 150 (239)
T ss_pred CCEEEEECH-----HHHHHHHHcCCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEE
Confidence 357887775 5558899999876542 11111 1111 2223445566666668889999999988753
No 150
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=30.82 E-value=2.9e+02 Score=22.36 Aligned_cols=112 Identities=9% Similarity=-0.065 Sum_probs=62.1
Q ss_pred HHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCCeE
Q 026546 69 TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTS 147 (237)
Q Consensus 69 ~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~-ivDaTCP~V~kv~~~v~~~~~~Gy~i 147 (237)
.+++.|+++|+++.= +++ +-.+.....++..|+. .++..=|...-+++..+++.-..-.+
T Consensus 35 ~~i~~Lk~~G~~i~I------------------vTn-~~~~~~~~~l~~~gi~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 95 (154)
T TIGR01670 35 YGIRCALKSGIEVAI------------------ITG-RKAKLVEDRCKTLGITHLYQGQSNKLIAFSDILEKLALAPENV 95 (154)
T ss_pred HHHHHHHHCCCEEEE------------------EEC-CCCHHHHHHHHHcCCCEEEecccchHHHHHHHHHHcCCCHHHE
Confidence 368899988877531 110 1124555666777775 46655466555666666655555679
Q ss_pred EEEecCCCcceeeeccccCeeEEE-cChhhHHhhhhhhcCCccCCCCchHHHHHHHH
Q 026546 148 IIHGKYSHEETVATASFAGKYIIV-KNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203 (237)
Q Consensus 148 vIiG~~~HpEv~g~~g~a~~~~vv-~~~~e~~~~~~~~~~~q~~~~~~~~~~f~~~f 203 (237)
+.+||..+- +.+. ..++-.+.+ ...+.++..++|++.+ .+..+-..+|.+++
T Consensus 96 ~~vGDs~~D-~~~~-~~ag~~~~v~~~~~~~~~~a~~i~~~--~~~~g~~~~~~~~~ 148 (154)
T TIGR01670 96 AYIGDDLID-WPVM-EKVGLSVAVADAHPLLIPRADYVTRI--AGGRGAVREVCELL 148 (154)
T ss_pred EEECCCHHH-HHHH-HHCCCeEecCCcCHHHHHhCCEEecC--CCCCcHHHHHHHHH
Confidence 999988633 2221 122222334 3346677778888753 11112244666554
No 151
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=30.68 E-value=71 Score=30.87 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=56.2
Q ss_pred ceEEecccccCHH-------------HHHHHHhcC--cEEecCCccccccccccCCCEEEEcC--CCCCHHH--------
Q 026546 57 KIWITNEIIHNPT-------------VNKRLEEMA--VQNIPVEEGKKQFDVVNKGDVVVLPA--FGAAVEE-------- 111 (237)
Q Consensus 57 ~vy~lgeiIHN~~-------------Vv~~L~~~G--v~~v~~~~~~~~~~~v~~g~~VIirA--HGv~~~v-------- 111 (237)
++|+.||.+.|+- ...-|+.+| |.++.+ ++++ ||.+|-+| -|++|+.
T Consensus 11 ~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~n------itD~--ddKIi~~A~~~G~~~~e~a~~~~~~ 82 (384)
T PRK12418 11 TMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQN------VTDV--DDPLLERAARDGVDWRDLAEREIAL 82 (384)
T ss_pred EEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEe------cCCc--chHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6899999988762 233456677 667764 3444 55565554 5777765
Q ss_pred -HHHHHhcCCc----EEeCcChhhHHHHHHHHHHhhCCCeEE
Q 026546 112 -MVTLNNKNVQ----IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (237)
Q Consensus 112 -~~~l~~~g~~----ivDaTCP~V~kv~~~v~~~~~~Gy~iv 148 (237)
.+.++..|+. ..=||=+ +..+++.++++.++||--.
T Consensus 83 f~~d~~~Lni~~~~~~~raTe~-i~~~~~~i~~L~~kG~aY~ 123 (384)
T PRK12418 83 FREDMEALRVLPPRDYVGAVES-IPEVVELVEKLLASGAAYV 123 (384)
T ss_pred HHHHHHHhCCCCCCccccCCCC-HHHHHHHHHHHHHCCCEEE
Confidence 3445666753 3556654 8899999999999998654
No 152
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=30.64 E-value=1.2e+02 Score=26.69 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCcEEecCCcc--cc----ccccccCCCEEEEcCCCCCHHHH-HHHHhcCCcEEeCcChhhHHHHHHHHHH
Q 026546 68 PTVNKRLEEMAVQNIPVEEG--KK----QFDVVNKGDVVVLPAFGAAVEEM-VTLNNKNVQIVDTTCPWVSKVWTSVEKH 140 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~--~~----~~~~v~~g~~VIirAHGv~~~v~-~~l~~~g~~ivDaTCP~V~kv~~~v~~~ 140 (237)
..+-..|.+.|+.++++..- .+ -++.+|.|++|.|+.+|.-..-. .++ +..-++..++++
T Consensus 100 r~~g~~~q~~Gi~VIP~v~W~~~~s~~~~~~gi~~~~ivaist~g~~~~~~~~~~-------------f~~Gl~em~~rl 166 (200)
T PF14386_consen 100 RWLGAYWQSNGIKVIPNVSWSDKRSFDFCFDGIPKGSIVAISTNGCINNKEDKKL-------------FLDGLREMLKRL 166 (200)
T ss_pred HHHHHHHHHCCCeEcceEEecCcchHHHHHhhcccCCEEEEEEecccCCHHHHHH-------------HHHHHHHHHhcc
Confidence 34556788999999987532 22 36678899999999999543322 222 223345555666
Q ss_pred hhCCCeEEEEe
Q 026546 141 KKGDYTSIIHG 151 (237)
Q Consensus 141 ~~~Gy~ivIiG 151 (237)
+=-.||++|
T Consensus 167 --~P~~ilvyG 175 (200)
T PF14386_consen 167 --RPKHILVYG 175 (200)
T ss_pred --CCCeEEEEC
Confidence 446888888
No 153
>PRK15428 putative propanediol utilization protein PduM; Provisional
Probab=30.45 E-value=1.2e+02 Score=26.21 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCC-CEEEEcCCC------CCHHHHHHHHhcCCcEEeCcChhhHHHHHHHH
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKG-DVVVLPAFG------AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVE 138 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g-~~VIirAHG------v~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~ 138 (237)
.+|+.+|+++--....- .+++++++ +.=||-=|| ++...++.|.+ .|++||+|.++|+...
T Consensus 11 ~~Vv~RLk~Ra~~~~~l-----s~~ql~~~~~~~vF~~~a~l~l~qvdl~ll~~La~-----~~~~~~~v~~i~eA~~ 78 (163)
T PRK15428 11 EEVVARLQRRAQSTATL-----SVAQLRDADSPTLFCQHASLRILLVDLPLLRQLAE-----ADTSDPAARKIHEALA 78 (163)
T ss_pred HHHHHHHHHHhhceEEE-----EHHHccCCCCCeEEEeccEEEEecCCHHHHHHHHc-----cCCCCHHHHHHHHHHH
Confidence 47888998876544431 24445442 222333344 57778887766 5799999999998764
No 154
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=30.39 E-value=98 Score=32.56 Aligned_cols=48 Identities=25% Similarity=0.244 Sum_probs=42.6
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEeccccc-CHHHHHHHHhcCcEEec
Q 026546 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIH-NPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 35 FC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIH-N~~Vv~~L~~~Gv~~v~ 83 (237)
+--.|.+||+.+.++.++. ++++-+.|++-. +|.....|-.+|+.++.
T Consensus 716 ~hPaV~~~i~~vi~~a~~~-g~~vgicge~~~~~p~~~~~l~~~G~~~ls 764 (782)
T TIGR01418 716 RNPAVLRLIEMAIKAAKEH-GKKVGICGQAPSDYPEVVEFLVEEGIDSIS 764 (782)
T ss_pred CCHHHHHHHHHHHHHHHhc-CCeEEEeCCCCCCCHHHHHHHHHcCCCEEE
Confidence 4578999999999888875 478999999998 89999999999999885
No 155
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=30.02 E-value=90 Score=27.47 Aligned_cols=70 Identities=14% Similarity=0.047 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE------EeCcChhhHH---HHHHHH
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI------VDTTCPWVSK---VWTSVE 138 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~i------vDaTCP~V~k---v~~~v~ 138 (237)
..|++.|+++|.-|+|+. +.+..| ..+.+++.|+.. +|.. +-... -.+++.
T Consensus 109 ~~vl~~l~~~gl~FvDS~---------T~~~s~----------a~~~A~~~gvp~~~rdvfLD~~-~~~~~I~~ql~~~~ 168 (213)
T PF04748_consen 109 RWVLEVLKERGLFFVDSR---------TTPRSV----------APQVAKELGVPAARRDVFLDND-QDEAAIRRQLDQAA 168 (213)
T ss_dssp HHHHHHHHHTT-EEEE-S-----------TT-S----------HHHHHHHCT--EEE-SEETTST--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEeCC---------CCcccH----------HHHHHHHcCCCEEeeceecCCC-CCHHHHHHHHHHHH
Confidence 568889999999999752 112211 235566677764 5655 54444 455566
Q ss_pred HHhhCCCeEEEEecCCCcce
Q 026546 139 KHKKGDYTSIIHGKYSHEET 158 (237)
Q Consensus 139 ~~~~~Gy~ivIiG~~~HpEv 158 (237)
+.+++.-..|.||++. ||+
T Consensus 169 ~~A~~~G~aI~Igh~~-p~T 187 (213)
T PF04748_consen 169 RIARKQGSAIAIGHPR-PET 187 (213)
T ss_dssp HHHHCCSEEEEEEE-S-CCH
T ss_pred HhhhhcCcEEEEEcCC-HHH
Confidence 6677666677799764 443
No 156
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=29.91 E-value=75 Score=30.44 Aligned_cols=10 Identities=30% Similarity=0.504 Sum_probs=5.2
Q ss_pred CEEEEcCCCC
Q 026546 98 DVVVLPAFGA 107 (237)
Q Consensus 98 ~~VIirAHGv 107 (237)
|+|||.+=++
T Consensus 38 D~viinTC~v 47 (430)
T TIGR01125 38 DYVIVNTCGF 47 (430)
T ss_pred CEEEEeCCCc
Confidence 5555554444
No 157
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=29.76 E-value=3.9e+02 Score=25.97 Aligned_cols=116 Identities=11% Similarity=0.057 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhC--CCCceEEec--ccccCHHHH---HHHHhcCcEEecC-Ccc--c---cccccccC--CCEEEEc
Q 026546 39 VERAVQIAYEARKQF--PEEKIWITN--EIIHNPTVN---KRLEEMAVQNIPV-EEG--K---KQFDVVNK--GDVVVLP 103 (237)
Q Consensus 39 V~RAv~~a~~a~~~~--~~~~vy~lg--eiIHN~~Vv---~~L~~~Gv~~v~~-~~~--~---~~~~~v~~--g~~VIir 103 (237)
++.+++.+.+....+ ++..|.+.| +...+|+.. +.++++|+.+.=. +++ . +.++.+.+ =|.|.|+
T Consensus 56 ~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iS 135 (404)
T TIGR03278 56 PQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFT 135 (404)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEe
Confidence 566666666655432 223333332 566666544 3445567654321 221 1 12344432 2678899
Q ss_pred CCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCC---eEEEEecCCC-cceeeecc
Q 026546 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY---TSIIHGKYSH-EETVATAS 163 (237)
Q Consensus 104 AHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy---~ivIiG~~~H-pEv~g~~g 163 (237)
-|++.|+.++++... |...++-+..+++++.+. +++++-..|. +|...|..
T Consensus 136 vka~dpe~h~kl~G~---------~~a~~ILe~L~~L~e~~~v~~~ivlIPGiND~eel~~ti~ 190 (404)
T TIGR03278 136 VFATDPELRREWMKD---------PTPEASLQCLRRFCESCEVHAASVIIPGVNDGDVLWKTCA 190 (404)
T ss_pred cccCCHHHHHHHhCC---------CCHHHHHHHHHHHHhcCCEEEEEEEeCCccCcHHHHHHHH
Confidence 999999999987542 223666666677766321 2334444443 55445543
No 158
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=29.36 E-value=23 Score=29.79 Aligned_cols=16 Identities=44% Similarity=0.939 Sum_probs=13.2
Q ss_pred CCCCcccHHHHHHHHH
Q 026546 32 SYGFCWGVERAVQIAY 47 (237)
Q Consensus 32 ~~GFC~GV~RAv~~a~ 47 (237)
-.|||||-.-|+.++.
T Consensus 102 ~vGfc~GG~~a~~~a~ 117 (218)
T PF01738_consen 102 VVGFCWGGKLALLLAA 117 (218)
T ss_dssp EEEETHHHHHHHHHHC
T ss_pred EEEEecchHHhhhhhh
Confidence 3499999999998773
No 159
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=29.21 E-value=1.4e+02 Score=28.32 Aligned_cols=79 Identities=19% Similarity=0.345 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHhhCCCCceEEecc--cccCHHHHHHHHhcCcEEecCCccccccccccCCCE-EEEcCCC-CCHHHHH
Q 026546 38 GVERAVQIAYEARKQFPEEKIWITNE--IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDV-VVLPAFG-AAVEEMV 113 (237)
Q Consensus 38 GV~RAv~~a~~a~~~~~~~~vy~lge--iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~-VIirAHG-v~~~v~~ 113 (237)
|-+.||+-|+.- -.|..--| =+-.+.-.++++..||.++++ |.+.+..|.+ |+|.-|| .+-.+..
T Consensus 33 Ga~mAiefAeAG------HDVVLaePn~d~~dd~~w~~vedAGV~vv~d-----D~eaa~~~Ei~VLFTPFGk~T~~Iar 101 (340)
T COG4007 33 GARMAIEFAEAG------HDVVLAEPNRDIMDDEHWKRVEDAGVEVVSD-----DAEAAEHGEIHVLFTPFGKATFGIAR 101 (340)
T ss_pred chHHHHHHHHcC------CcEEeecCCccccCHHHHHHHHhcCcEEecC-----chhhhhcceEEEEecccchhhHHHHH
Confidence 666677766431 11222111 145677789999999999985 4455555554 7899999 6655555
Q ss_pred HHHh--cCCcEEeCcC
Q 026546 114 TLNN--KNVQIVDTTC 127 (237)
Q Consensus 114 ~l~~--~g~~ivDaTC 127 (237)
++.+ .--.||=.||
T Consensus 102 ei~~hvpEgAVicnTC 117 (340)
T COG4007 102 EILEHVPEGAVICNTC 117 (340)
T ss_pred HHHhhCcCCcEecccc
Confidence 4443 2233455555
No 160
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=29.19 E-value=2.6e+02 Score=25.06 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=34.7
Q ss_pred CHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEec
Q 026546 108 AVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGK 152 (237)
Q Consensus 108 ~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~ 152 (237)
+.+.++.+++.+ .+.=|.||-...+.+..+++.++|+.|+.+.=
T Consensus 43 ~~~~y~~~~~~~-~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~i 86 (275)
T TIGR00762 43 PEEFYEKLKESK-ELPKTSQPSPGEFLELYEKLLEEGDEVLSIHL 86 (275)
T ss_pred HHHHHHHHHhcC-CCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEc
Confidence 356666665533 35569999999999999999999999988863
No 161
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=28.87 E-value=1.8e+02 Score=25.75 Aligned_cols=95 Identities=23% Similarity=0.383 Sum_probs=47.4
Q ss_pred cceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEe-------cccccCHH-------HHHHHHhcC-------cEE
Q 026546 23 GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWIT-------NEIIHNPT-------VNKRLEEMA-------VQN 81 (237)
Q Consensus 23 g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~l-------geiIHN~~-------Vv~~L~~~G-------v~~ 81 (237)
|.+.++=+.- .||+-|+++.+--+- .| ++||+. .+|||-.. =++-.++.| |.-
T Consensus 19 GeV~l~G~GR----LG~Rval~Lle~HRG-Gp-eri~v~Dgqrve~dDiihrr~Ga~~GEyKv~Fi~rl~~~~f~r~V~a 92 (217)
T COG4015 19 GEVSLIGCGR----LGVRVALDLLEVHRG-GP-ERIYVFDGQRVEEDDIIHRRLGAKVGEYKVDFIKRLGRVHFGRRVEA 92 (217)
T ss_pred ceEEEEeccc----hhHHHHHHHHHHhcC-CC-eEEEEecCcccCchhhHHHHhCCCcchhHHHHHHHhCcCCCCceeec
Confidence 4444443433 578888887754332 33 578875 35666321 112222222 111
Q ss_pred ecCCccccccccccCCCEEEEcCCC-----CCHHHHHHHHhcCCcEEe
Q 026546 82 IPVEEGKKQFDVVNKGDVVVLPAFG-----AAVEEMVTLNNKNVQIVD 124 (237)
Q Consensus 82 v~~~~~~~~~~~v~~g~~VIirAHG-----v~~~v~~~l~~~g~~ivD 124 (237)
.++.-..+++..+ .||+|+|---| ++.++...++++|...|-
T Consensus 93 ~pE~it~dNlhll-~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~Tis 139 (217)
T COG4015 93 FPENITKDNLHLL-KGDVVVICIAGGDTIPVTAAIINYAKERGIKTIS 139 (217)
T ss_pred ccccccccchhhh-cCCEEEEEecCCCcchhHHHHHHHHHHcCceEee
Confidence 1111112344444 37877766555 456666777777766653
No 162
>PRK13936 phosphoheptose isomerase; Provisional
Probab=28.86 E-value=3.7e+02 Score=22.93 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=34.0
Q ss_pred cCCCEE-EEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccCeeEEEcC
Q 026546 95 NKGDVV-VLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKN 173 (237)
Q Consensus 95 ~~g~~V-IirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~ 173 (237)
.+||.+ +|+.-|-++++.+.+ +...++|-++|.+-...+.........++..+.+.+
T Consensus 110 ~~~Dv~i~iS~sG~t~~~~~~~----------------------~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~ 167 (197)
T PRK13936 110 QPGDVLLAISTSGNSANVIQAI----------------------QAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPA 167 (197)
T ss_pred CCCCEEEEEeCCCCcHHHHHHH----------------------HHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCC
Confidence 467764 589999998887655 344556666666665555444333323444444433
No 163
>TIGR01703 hybrid_clust hydroxylamine reductase. This model represents a family of proteins containing an unusual 4Fe-2S-2O hydrid cluster. Earlier reports had proposed a 6Fe-6S prismane cluster. This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N-terminus of the protein. Members have been described as monomeric. The function is unknown, but is almost certain to involve oxidoreductase enzymatic activity. Members are found in E. coli and other bacteria, in Archaea, and in several parasitic eukaryotes: Giardia intestinalis, Trichomonas vaginalis, and Entamoeba histolytica.
Probab=28.72 E-value=77 Score=31.99 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=41.9
Q ss_pred ceEEecccccCHHHHHHH----HhcCcEEecCCccccccccccCCCEEEEcCCCCC-----------------HHHHHHH
Q 026546 57 KIWITNEIIHNPTVNKRL----EEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA-----------------VEEMVTL 115 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L----~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~-----------------~~v~~~l 115 (237)
.|.+.| |+|...+.| +.+||.+... |. +++|||+| .+..+.+
T Consensus 218 ~IlV~G---Hd~~~~~~ll~~~~~~GInvyT~------------~E--ml~~hgyp~l~k~~~l~Gn~g~aw~~q~~Ef~ 280 (522)
T TIGR01703 218 AILVSG---HDLKDLEELLEQTEGTGINVYTH------------GE--MLPAHGYPELKKYPHLAGNYGGAWQDQQREFA 280 (522)
T ss_pred ceEEEC---CChHHHHHHHHHHhcCCeeEEEC------------cc--hHhhccCcccccCCcccccchhhhhhhhHHHH
Confidence 577888 999988887 4568887742 34 67899999 2234445
Q ss_pred HhcCCcEEeCcChhhH
Q 026546 116 NNKNVQIVDTTCPWVS 131 (237)
Q Consensus 116 ~~~g~~ivDaTCP~V~ 131 (237)
.--|..++|+-|-+-.
T Consensus 281 ~~~Gaiv~~~nCi~p~ 296 (522)
T TIGR01703 281 EFPGPILMTSNCIIPP 296 (522)
T ss_pred hCCCCEEEeccCCCCC
Confidence 5578999999996544
No 164
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=28.34 E-value=2.6e+02 Score=27.95 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 026546 109 VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~ 154 (237)
......+++.|+.++....|- .| -..++++.++|..++.+||.-
T Consensus 433 ~~a~~ia~~lgi~~~~~~~p~-~K-~~~v~~l~~~~~~v~~VGDg~ 476 (562)
T TIGR01511 433 KTAKAVAKELGINVRAEVLPD-DK-AALIKELQEKGRVVAMVGDGI 476 (562)
T ss_pred HHHHHHHHHcCCcEEccCChH-HH-HHHHHHHHHcCCEEEEEeCCC
Confidence 344555666677666555554 23 345677788999999999874
No 165
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=28.16 E-value=80 Score=28.15 Aligned_cols=67 Identities=24% Similarity=0.135 Sum_probs=44.3
Q ss_pred cccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHh-hCCCeEEEEecCCCcceeeeccc
Q 026546 91 FDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHK-KGDYTSIIHGKYSHEETVATASF 164 (237)
Q Consensus 91 ~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~-~~Gy~ivIiG~~~HpEv~g~~g~ 164 (237)
.+-|++|++|+|-+=-..-...+.|..+++.|| |+.+ ..+..+. ..+.+++++|=.-+|+..++.|.
T Consensus 88 a~~I~~g~~Ifld~GsT~~~la~~L~~~~ltVv-Tnsl------~ia~~l~~~~~~~v~l~GG~~~~~~~~~~G~ 155 (251)
T PRK13509 88 SQLCNPGESVVINCGSTAFLLGRELCGKPVQII-TNYL------PLANYLIDQEHDSVIIMGGQYNKSQSITLSP 155 (251)
T ss_pred HHhCCCCCEEEECCcHHHHHHHHHhCCCCeEEE-eCCH------HHHHHHHhCCCCEEEEECCeEcCCcceeECH
Confidence 344567998888765445566666766677777 3333 3444444 45789999998878887777664
No 166
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.12 E-value=1.1e+02 Score=30.96 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=44.1
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccc
Q 026546 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASF 164 (237)
Q Consensus 97 g~~VIirAHGv~~~v~~~l~~~g~~i--vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~ 164 (237)
+.++|+-.--+...+-+.|+++|..+ ||.. .++++++.+.|+. +++||..+||+---.|-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d-------~~~v~~~~~~g~~-v~~GDat~~~~L~~agi 462 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHD-------PDHIETLRKFGMK-VFYGDATRMDLLESAGA 462 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECC-------HHHHHHHHhcCCe-EEEEeCCCHHHHHhcCC
Confidence 55666766667788888999988655 6654 4456667778986 69999999998755553
No 167
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=28.07 E-value=93 Score=27.35 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=68.8
Q ss_pred eCCCCCcccHHH---HHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCC
Q 026546 30 AESYGFCWGVER---AVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 106 (237)
Q Consensus 30 A~~~GFC~GV~R---Av~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHG 106 (237)
+.|.|.-+.++| |+++.++-+++|+ ++| +..++.. --+.+.++++-|.+.|--=|
T Consensus 55 ~~p~~~v~AIe~~~~a~~~~~~N~~~fg----------~~n-----------~~vv~g~-Ap~~L~~~~~~daiFIGGg~ 112 (187)
T COG2242 55 AGPSGRVIAIERDEEALELIERNAARFG----------VDN-----------LEVVEGD-APEALPDLPSPDAIFIGGGG 112 (187)
T ss_pred hCCCceEEEEecCHHHHHHHHHHHHHhC----------CCc-----------EEEEecc-chHhhcCCCCCCEEEECCCC
Confidence 377777777777 7777766665553 232 2233221 01134445555667666556
Q ss_pred CCHHHHHHHHh---cCCcEEeCcChhhHHHHHHHHHHhhCCC-eEEEEecCCCcceeeeccc
Q 026546 107 AAVEEMVTLNN---KNVQIVDTTCPWVSKVWTSVEKHKKGDY-TSIIHGKYSHEETVATASF 164 (237)
Q Consensus 107 v~~~v~~~l~~---~g~~ivDaTCP~V~kv~~~v~~~~~~Gy-~ivIiG~~~HpEv~g~~g~ 164 (237)
-=+++.+.+.+ .|=++| +++-.........+.+.+.|+ .++=+.-..-.++-+-..|
T Consensus 113 ~i~~ile~~~~~l~~ggrlV-~naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~lg~~~~~ 173 (187)
T COG2242 113 NIEEILEAAWERLKPGGRLV-ANAITLETLAKALEALEQLGGREIVQVQISRGKPLGGGTMF 173 (187)
T ss_pred CHHHHHHHHHHHcCcCCeEE-EEeecHHHHHHHHHHHHHcCCceEEEEEeecceeccCeeEe
Confidence 66677766665 566676 788888999999999999999 6666554443333333334
No 168
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=27.95 E-value=2e+02 Score=26.56 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCC-CHHHHHHHHhcCC-------------------cEEeCcC
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGA-AVEEMVTLNNKNV-------------------QIVDTTC 127 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv-~~~v~~~l~~~g~-------------------~ivDaTC 127 (237)
+..+++|.++|++++-.. -|.-.. ++..++++.++|+ .++|-|=
T Consensus 74 ~~mi~~Lh~~G~~~~~~i----------------~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftn 137 (317)
T cd06594 74 DELIEELKARGIRVLTYI----------------NPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTN 137 (317)
T ss_pred HHHHHHHHHCCCEEEEEe----------------cCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCC
Confidence 578899999999987421 111111 1122455655554 3488888
Q ss_pred hhhHHHH-HHHHHH-hhCCCe
Q 026546 128 PWVSKVW-TSVEKH-KKGDYT 146 (237)
Q Consensus 128 P~V~kv~-~~v~~~-~~~Gy~ 146 (237)
|-..+-| ++.+++ .+.|..
T Consensus 138 p~a~~ww~~~~~~~~~~~Gvd 158 (317)
T cd06594 138 PAARDWFKQVIKEMLLDLGLS 158 (317)
T ss_pred HHHHHHHHHHHHHHhhhcCCc
Confidence 8888887 555554 445554
No 169
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=27.65 E-value=1.4e+02 Score=24.77 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=54.4
Q ss_pred CCceEEecccccCHHHHHHHHhcCcEEecCCc----cccc----cccccCC--CEEEEc-CCCCCHHHHHHHHhcCCcEE
Q 026546 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE----GKKQ----FDVVNKG--DVVVLP-AFGAAVEEMVTLNNKNVQIV 123 (237)
Q Consensus 55 ~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~----~~~~----~~~v~~g--~~VIir-AHGv~~~v~~~l~~~g~~iv 123 (237)
+++|....-=.+++...+.|+++|..+..-.- ...+ ...+..+ +.|+|. ..++ ....+.+.+.| ..-
T Consensus 122 ~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~~~~~~~iiftS~~~v-~~f~~~~~~~~-~~~ 199 (239)
T cd06578 122 GKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELLEEGAIDAVLFTSPSTV-RNLLELLGKEG-RAL 199 (239)
T ss_pred CCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCcHHHHHHHHcCCCcEEEEeCHHHH-HHHHHHHhhhh-hhh
Confidence 45665555556678899999999987654210 0000 1112222 245544 3333 23344444433 223
Q ss_pred eCcChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 026546 124 DTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (237)
Q Consensus 124 DaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~ 154 (237)
-.+|+++.--.+.++.+.+.|++.+++.+..
T Consensus 200 ~~~~~~~aig~~t~~~l~~~g~~~~~~~~~~ 230 (239)
T cd06578 200 LKNVKIAAIGPRTAEALRELGLKVVIVAESP 230 (239)
T ss_pred hcCCeEEEECHHHHHHHHHcCCCceeeecCC
Confidence 3567777767777777778888877776443
No 170
>PRK08445 hypothetical protein; Provisional
Probab=27.60 E-value=1.9e+02 Score=27.28 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=52.6
Q ss_pred hHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeccc--c--------cCHHHHHHHHhc
Q 026546 8 DIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI--I--------HNPTVNKRLEEM 77 (237)
Q Consensus 8 ~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgei--I--------HN~~Vv~~L~~~ 77 (237)
+|++.+++. ...|.-+|.+.....+....++-.+++....+.+|+-.+..+.+. - =++++.++|++.
T Consensus 77 eI~~~~~~a---~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeA 153 (348)
T PRK08445 77 EIDKKIEEL---LAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAK 153 (348)
T ss_pred HHHHHHHHH---HHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 566666653 234455888888788889999999999888888875555433322 1 148999999999
Q ss_pred CcEEec
Q 026546 78 AVQNIP 83 (237)
Q Consensus 78 Gv~~v~ 83 (237)
|+.-+.
T Consensus 154 Gl~~~~ 159 (348)
T PRK08445 154 GLSSIP 159 (348)
T ss_pred CCCCCC
Confidence 998664
No 171
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=27.42 E-value=4.3e+02 Score=26.12 Aligned_cols=100 Identities=10% Similarity=0.096 Sum_probs=51.0
Q ss_pred ceEEEEeCCCCCcc----cHHHHHHHHHHHH-hh-------CCCCceEEecccc------cC-HHHHHHHHhcCcEEecC
Q 026546 24 NVKVKLAESYGFCW----GVERAVQIAYEAR-KQ-------FPEEKIWITNEII------HN-PTVNKRLEEMAVQNIPV 84 (237)
Q Consensus 24 ~m~I~lA~~~GFC~----GV~RAv~~a~~a~-~~-------~~~~~vy~lgeiI------HN-~~Vv~~L~~~Gv~~v~~ 84 (237)
+..|+.+..-||.. |-.+|++...+.. .. .....|=++|+.- +| ..+..-|+++|+.+.--
T Consensus 115 ~~pvi~v~t~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 115 KSKVIVADVNAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred CCcEEEecCCCcccchhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 46788898889864 5566655443321 11 0123588888753 23 34445568899987542
Q ss_pred C---ccccccccccCCCEEEEcCCCCCHHHHHHHHh-cCCcEE
Q 026546 85 E---EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN-KNVQIV 123 (237)
Q Consensus 85 ~---~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~-~g~~iv 123 (237)
. ...+++..++.-..-|...+-.....-+.|++ -|...+
T Consensus 195 ~p~g~s~~dl~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i 237 (511)
T TIGR01278 195 APWGASIADLARLPAAWLNICPYREIGLMAAEYLKEKFGQPYI 237 (511)
T ss_pred eCCCCCHHHHHhcccCcEEEEechHHHHHHHHHHHHHhCCCcc
Confidence 1 12234445544332222222122333444443 366554
No 172
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=27.39 E-value=3.4e+02 Score=23.48 Aligned_cols=34 Identities=12% Similarity=-0.032 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCcEEeCcC------hhhHHHHHHHHHHhh
Q 026546 109 VEEMVTLNNKNVQIVDTTC------PWVSKVWTSVEKHKK 142 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDaTC------P~V~kv~~~v~~~~~ 142 (237)
..+.+.|+++|+.|+|-.| .|.--.++.++...+
T Consensus 16 ~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~ 55 (171)
T PRK12615 16 MAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVN 55 (171)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc
Confidence 4678899999999999665 566666666666544
No 173
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=27.27 E-value=80 Score=29.49 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=17.2
Q ss_pred HHHHHHhhCCCeEEEEecCCCcc
Q 026546 135 TSVEKHKKGDYTSIIHGKYSHEE 157 (237)
Q Consensus 135 ~~v~~~~~~Gy~ivIiG~~~HpE 157 (237)
+.++.+.+-|..++++++-+||.
T Consensus 211 el~~~L~~~~~~~~~vsh~nh~~ 233 (331)
T TIGR00238 211 ELCELLASFELQLMLVTHINHCN 233 (331)
T ss_pred HHHHHHHhcCCcEEEEccCCChH
Confidence 45555666688889999999974
No 174
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=27.11 E-value=4.6e+02 Score=24.46 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=49.3
Q ss_pred hhHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEec--ccc--------cCHHHHHHHHh
Q 026546 7 SDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITN--EII--------HNPTVNKRLEE 76 (237)
Q Consensus 7 s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lg--eiI--------HN~~Vv~~L~~ 76 (237)
.++++.+++. ...|--+|.+.....+....++..+++....+.+|+-.+-.+. +|- =.+.+.++|++
T Consensus 82 eeI~~~a~~~---~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lke 158 (351)
T TIGR03700 82 EEIVARVKEA---YAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKE 158 (351)
T ss_pred HHHHHHHHHH---HHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455555543 3456677888766667788899999998888777643333322 111 15778999999
Q ss_pred cCcEEec
Q 026546 77 MAVQNIP 83 (237)
Q Consensus 77 ~Gv~~v~ 83 (237)
.|+..+.
T Consensus 159 AGld~~~ 165 (351)
T TIGR03700 159 AGLDSMP 165 (351)
T ss_pred cCCCcCC
Confidence 9998775
No 175
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=27.07 E-value=1.3e+02 Score=30.63 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=44.7
Q ss_pred CCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 026546 32 SYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 32 ~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~ 83 (237)
...+...|.|+++.+.++.++. ++++-+-|++--+|...--|-.+|+.-+.
T Consensus 474 ~~~~hPav~~~i~~v~~~a~~~-g~~v~vCGe~A~dp~~~~lLlglGi~~lS 524 (575)
T PRK11177 474 YNPMSPSVLNLIKQVIDASHAE-GKWTGMCGELAGDERATLLLLGMGLDEFS 524 (575)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHCCCCeEE
Confidence 3457789999999999988876 47999999999999999999999998664
No 176
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=26.90 E-value=1.7e+02 Score=25.18 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=36.8
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhh-HHHHHHHHHHhhCCCeEEEE-e
Q 026546 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV-SKVWTSVEKHKKGDYTSIIH-G 151 (237)
Q Consensus 97 g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V-~kv~~~v~~~~~~Gy~ivIi-G 151 (237)
..++|+..-..+++..+.|+++|+.++. |+-- -......+++.++|+.-|++ |
T Consensus 90 ~~~~v~t~~~~~~~~~~~l~~~gv~vi~--~~~~~~dl~~~l~~L~~~g~~~vlveG 144 (210)
T TIGR01508 90 AKTIIATSEDEPEEKVEELEDKGVEVVK--FGEGRVDLKKLLDILYDKGVRRLMVEG 144 (210)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCEEEE--eCCCCcCHHHHHHHHHHCCCCEEEEee
Confidence 3567787677788888889999999874 3311 13455667778888877766 5
No 177
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=26.72 E-value=5e+02 Score=23.81 Aligned_cols=59 Identities=8% Similarity=0.168 Sum_probs=35.9
Q ss_pred eEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHH
Q 026546 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137 (237)
Q Consensus 58 vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v 137 (237)
+.|.|.++. ...++|.+.|+.. |-|+-+|..++.++.+...| -..++.+-+
T Consensus 96 itTNG~ll~--~~~~~L~~aGl~~------------------v~ISlDs~~~e~~~~i~~~g---------~~~~vl~~i 146 (329)
T PRK13361 96 LTTNGSRLA--RFAAELADAGLKR------------------LNISLDTLRPELFAALTRNG---------RLERVIAGI 146 (329)
T ss_pred EEeChhHHH--HHHHHHHHcCCCe------------------EEEEeccCCHHHhhhhcCCC---------CHHHHHHHH
Confidence 456666653 3556666666543 44666777777776664432 246677777
Q ss_pred HHHhhCCC
Q 026546 138 EKHKKGDY 145 (237)
Q Consensus 138 ~~~~~~Gy 145 (237)
+.+.+.|.
T Consensus 147 ~~~~~~Gi 154 (329)
T PRK13361 147 DAAKAAGF 154 (329)
T ss_pred HHHHHcCC
Confidence 77767666
No 178
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=26.71 E-value=3.8e+02 Score=22.37 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=28.8
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEec
Q 026546 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITN 62 (237)
Q Consensus 24 ~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lg 62 (237)
...|+.....+.-.|.+..++.+....+..++-.+++.|
T Consensus 199 ~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G 237 (374)
T cd03801 199 EPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVG 237 (374)
T ss_pred CeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEe
Confidence 456666677777889999998887777655444688888
No 179
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=26.65 E-value=1.8e+02 Score=30.04 Aligned_cols=66 Identities=9% Similarity=0.105 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeE
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~i 147 (237)
.+..+.|+++|..|..+++ .-|| +...++.-+.+ +...+++..+++ +|---
T Consensus 106 ~eLr~eL~~~G~~F~S~TD-----------TEVi-------~hLi~~~~~~~---------~~~a~~~~l~~l--~Gsya 156 (597)
T COG0449 106 AELKEELEAKGYVFKSDTD-----------TEVI-------AHLLEEIYDTS---------LLEAVKKVLKRL--EGSYA 156 (597)
T ss_pred HHHHHHHHhcCCEEecCCc-----------hHHH-------HHHHHHHHHhH---------HHHHHHHHHHHh--cceeE
Confidence 4567889999999997631 1011 24444444444 666666666665 56667
Q ss_pred EEEecCCCcc-eeeec
Q 026546 148 IIHGKYSHEE-TVATA 162 (237)
Q Consensus 148 vIiG~~~HpE-v~g~~ 162 (237)
+.+.+++||+ +.+..
T Consensus 157 l~~~~~~~p~~i~~ar 172 (597)
T COG0449 157 LLCTHSDFPDELVAAR 172 (597)
T ss_pred EEEEecCCCCeEEEEc
Confidence 7788899987 44444
No 180
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.58 E-value=4.4e+02 Score=24.70 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=66.1
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec--CCc--cc-cccccccCCC
Q 026546 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEE--GK-KQFDVVNKGD 98 (237)
Q Consensus 24 ~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~--~~~--~~-~~~~~v~~g~ 98 (237)
++-.+..+|.-||-|++.|++.+.+... ..+|-+-- -|..-....-+.|+-.+. +-+ .. +-+..+ ++.
T Consensus 177 D~vLIkdNHi~~~G~i~~av~~~r~~~~---~~kIeVEv---etleea~eA~~aGaDiImLDnmspe~l~~av~~~-~~~ 249 (294)
T PRK06978 177 DGILIKENHIAAAGGVGAALDAAFALNA---GVPVQIEV---ETLAQLETALAHGAQSVLLDNFTLDMMREAVRVT-AGR 249 (294)
T ss_pred ceEEEeHHHHHHhCCHHHHHHHHHHhCC---CCcEEEEc---CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh-cCC
Confidence 5667788999999999999999976442 23455553 466555556667776654 210 00 111112 244
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcChh
Q 026546 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 99 ~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
+++--|=|++++-..+..+.|+.+|.+.++.
T Consensus 250 ~~lEaSGGIt~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 250 AVLEVSGGVNFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 5556666799999999999999999888765
No 181
>PRK04280 arginine repressor; Provisional
Probab=26.27 E-value=3.8e+02 Score=22.30 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=28.2
Q ss_pred hhCCCeEEEEecC-------------CCcceeeeccccCeeEE-EcChhhHHhhhhhh
Q 026546 141 KKGDYTSIIHGKY-------------SHEETVATASFAGKYII-VKNMKEAEYVCDYI 184 (237)
Q Consensus 141 ~~~Gy~ivIiG~~-------------~HpEv~g~~g~a~~~~v-v~~~~e~~~~~~~~ 184 (237)
...+..|||.=.+ +.||+.||.+=-+..+| ..+.++++.+++.+
T Consensus 87 ~~~~~~vvikT~pG~A~~va~~iD~~~~~eI~GTIAGdDTilvi~~~~~~a~~l~~~l 144 (148)
T PRK04280 87 DGAGNLLVLKTLPGNANSIGALIDNLDWDEILGTICGDDTCLIICRTEEDAEEVKDRF 144 (148)
T ss_pred eeeCCEEEEEcCCChHHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHHHH
Confidence 3455666666533 45999999864445544 48888887776443
No 182
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=26.23 E-value=61 Score=30.89 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=27.4
Q ss_pred ccCCCEEEEc-CCCCCHHHHHHHHhcCCcEEeCcC
Q 026546 94 VNKGDVVVLP-AFGAAVEEMVTLNNKNVQIVDTTC 127 (237)
Q Consensus 94 v~~g~~VIir-AHGv~~~v~~~l~~~g~~ivDaTC 127 (237)
+.+-|.|++. .||++.+...++.++|+.|||.+=
T Consensus 66 ~~~~Divf~a~~~~~s~~~~~~~~~~G~~VID~Ss 100 (347)
T PRK06728 66 FEGVDIAFFSAGGEVSRQFVNQAVSSGAIVIDNTS 100 (347)
T ss_pred hcCCCEEEECCChHHHHHHHHHHHHCCCEEEECch
Confidence 3334777774 599999999999999999999873
No 183
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=26.06 E-value=1.4e+02 Score=28.22 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=33.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEE
Q 026546 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (237)
Q Consensus 99 ~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIi 150 (237)
.+|+-+.|.|.+ .++|++.|++++ .+||-+.-. +++.+.|-..||.
T Consensus 84 ~~V~~~~G~P~~-~~~lk~~Gi~v~-~~v~s~~~A----~~a~~~GaD~vVa 129 (320)
T cd04743 84 TFALIAGGRPDQ-ARALEAIGISTY-LHVPSPGLL----KQFLENGARKFIF 129 (320)
T ss_pred cEEEEcCCChHH-HHHHHHCCCEEE-EEeCCHHHH----HHHHHcCCCEEEE
Confidence 355556787765 799999999999 666766554 5566788877665
No 184
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=26.05 E-value=5.8e+02 Score=24.31 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=37.6
Q ss_pred ceEEEEeCCCCCc----ccHHHHHHHHHHHHhh-C---CCCceEEecccc--c--CHHHHHHHHhcCcEEec
Q 026546 24 NVKVKLAESYGFC----WGVERAVQIAYEARKQ-F---PEEKIWITNEII--H--NPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 24 ~m~I~lA~~~GFC----~GV~RAv~~a~~a~~~-~---~~~~vy~lgeiI--H--N~~Vv~~L~~~Gv~~v~ 83 (237)
+..|+-...-||. .|.++|++...+.... . ..+.|-++|.-. + ...+.+-|+++|+.++-
T Consensus 116 ~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 116 DFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred CCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 4567777778887 5777777665543322 1 123588886432 1 25666777999998764
No 185
>PRK07758 hypothetical protein; Provisional
Probab=25.83 E-value=26 Score=27.68 Aligned_cols=43 Identities=12% Similarity=0.295 Sum_probs=30.5
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHH----HHhcCC
Q 026546 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVT----LNNKNV 120 (237)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~----l~~~g~ 120 (237)
..+.|++.||..+.+ +...++.+ +...||+.|.-+++ |+++|+
T Consensus 46 A~N~Lk~AGI~TL~d------Lv~~te~E--Ll~iknlGkKSL~EIkekL~E~GL 92 (95)
T PRK07758 46 ARRALEHHGIHTVEE------LSKYSEKE--ILKLHGMGPASLPKLRKALEESGL 92 (95)
T ss_pred HHHHHHHcCCCcHHH------HHcCCHHH--HHHccCCCHHHHHHHHHHHHHcCC
Confidence 457899999999974 55555444 57889999877766 555554
No 186
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.68 E-value=1.1e+02 Score=20.96 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=24.7
Q ss_pred HHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCH-HHHHHHHhcCCcE
Q 026546 69 TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV-EEMVTLNNKNVQI 122 (237)
Q Consensus 69 ~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~-~v~~~l~~~g~~i 122 (237)
.+.+-|.+.|+.+..-. ... -.+...+.++. -.+ ...+.|+++|+++
T Consensus 17 ~v~~~l~~~~inI~~i~----~~~-~~~~~~~rl~~--~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 17 AVTEILSEAGINIRALS----IAD-TSEFGILRLIV--SDPDKAKEALKEAGFAV 64 (66)
T ss_pred HHHHHHHHCCCCEEEEE----EEe-cCCCCEEEEEE--CCHHHHHHHHHHCCCEE
Confidence 45566777888765310 000 00113344444 334 7777888888775
No 187
>cd01914 HCP Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH). The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Probab=25.62 E-value=77 Score=31.21 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=42.8
Q ss_pred ceEEecccccCHHHHHHHHh----cCcEEecCCccccccccccCCCEEEEcCCCCCH---------------HH--HHHH
Q 026546 57 KIWITNEIIHNPTVNKRLEE----MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV---------------EE--MVTL 115 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L~~----~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~---------------~v--~~~l 115 (237)
.|.+.| |+|...+.|-+ +||.+.. -+. +++|||+|. .- .+.+
T Consensus 119 ~IlV~G---Hd~~~~~~ll~q~~~~GInvyt------------h~E--mL~~hgyP~l~k~~hl~Gn~g~aw~~q~~Ef~ 181 (423)
T cd01914 119 GILVSG---HDLKDLEELLEQTEGTGVDVYT------------HGE--MLPAHGYPELKKYPHLVGNYGGAWQNQQKEFA 181 (423)
T ss_pred ceEEEC---CCHHHHHHHHHHhcCCCeEEEe------------cch--hHhhcCCcccccCCccccccchhhhhhHHHHH
Confidence 578888 99998888743 5666553 133 578999999 33 6666
Q ss_pred HhcCCcEEeCcChhhHH
Q 026546 116 NNKNVQIVDTTCPWVSK 132 (237)
Q Consensus 116 ~~~g~~ivDaTCP~V~k 132 (237)
.--|..++|+-|-+-..
T Consensus 182 ~~tGaiv~~~nCi~p~~ 198 (423)
T cd01914 182 RFPGPILMTTNCIIPPR 198 (423)
T ss_pred hCCCCEEEecccCcCCh
Confidence 66899999999965443
No 188
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=25.55 E-value=78 Score=26.67 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=49.2
Q ss_pred CCceEEecccccCHHHH-----HHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChh
Q 026546 55 EEKIWITNEIIHNPTVN-----KRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 55 ~~~vy~lgeiIHN~~Vv-----~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
+++..+.|+|+.+..-. +.+.+.-. ..+++++..+.+++.+=. .+..=....|-+||+
T Consensus 29 dg~~~i~G~l~d~~~~~~~~t~~~~~~~~~---------~~~~~l~~~~~i~~g~~~--------~~~~i~~f~D~~Cp~ 91 (197)
T cd03020 29 DGRYLIQGNLYDAKGRKDDLTEARLAQLNA---------IDLSALPLDDAIVYGKGN--------GKRVVYVFTDPDCPY 91 (197)
T ss_pred CCCEEEEeEEEEccCCCCChhHHHHHHhhh---------hhhhhCCcccCeEEcCCC--------CCEEEEEEECCCCcc
Confidence 45677889998855321 12221111 135566544445553311 111222358999999
Q ss_pred hHHHHHHHHHHhhCCCeEEEE--ecCCCcc
Q 026546 130 VSKVWTSVEKHKKGDYTSIIH--GKYSHEE 157 (237)
Q Consensus 130 V~kv~~~v~~~~~~Gy~ivIi--G~~~HpE 157 (237)
=.+.|..+.+ ...++++.++ .-.+||+
T Consensus 92 C~~~~~~l~~-~~~~v~v~~~~~p~~~~~~ 120 (197)
T cd03020 92 CRKLEKELKP-NADGVTVRIFPVPILGLPD 120 (197)
T ss_pred HHHHHHHHhh-ccCceEEEEEEcCcCCCcc
Confidence 9999999987 5667877766 4445544
No 189
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=25.09 E-value=58 Score=29.12 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.4
Q ss_pred hcCCcEEeCcChhhHHHHHHHHHHhhC
Q 026546 117 NKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (237)
Q Consensus 117 ~~g~~ivDaTCP~V~kv~~~v~~~~~~ 143 (237)
..+++++||+ |-|.+||+.|..+.++
T Consensus 170 ~~~~~~vDAs-~sve~V~~~V~~i~e~ 195 (208)
T KOG3327|consen 170 DLNWHVVDAS-KSVEKVHQQVRSLVEN 195 (208)
T ss_pred CCCeEEEecC-ccHHHHHHHHHHHHHH
Confidence 3678999999 9999999999877765
No 190
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=25.05 E-value=2.7e+02 Score=27.86 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=72.7
Q ss_pred cceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCH-HHHHHHHhcCcEEecCCcccccccc----cc--
Q 026546 23 GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNP-TVNKRLEEMAVQNIPVEEGKKQFDV----VN-- 95 (237)
Q Consensus 23 g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~-~Vv~~L~~~Gv~~v~~~~~~~~~~~----v~-- 95 (237)
-+-++++|+. -+.|-+++++...+..++.|.---.++--. .+++.|+++|+.+++. ||.| +.
T Consensus 77 ~Gg~vy~A~~------aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ET-----DLGE~IlQl~~~ 145 (459)
T COG1139 77 NGGHVYFAKD------AEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIEVWET-----DLGELILQLAGE 145 (459)
T ss_pred cCCEEEEeCC------HHHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCeEEEc-----cHHHHHHHhcCC
Confidence 3468999976 589999999988754445554333333222 4677899999999986 2322 21
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCC
Q 026546 96 KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145 (237)
Q Consensus 96 ~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy 145 (237)
+...+|.||=.-+++...++-+..+..... +-...+-..|+++-++-|
T Consensus 146 ~PsHIV~PAlH~~reqIa~if~ekl~~~~~--~~~eel~~~aR~~lR~kf 193 (459)
T COG1139 146 PPSHIVAPALHKNREQIAEIFKEKLGYEGE--DTPEELTAAAREFLREKF 193 (459)
T ss_pred CCcceeccccccCHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHHH
Confidence 246799999888888887776665554433 555666666666665544
No 191
>PRK08562 rpl32e 50S ribosomal protein L32e; Validated
Probab=24.88 E-value=1.1e+02 Score=25.36 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=19.5
Q ss_pred EcCCCCC----HHHHHHHHhcCCcEEeCc
Q 026546 102 LPAFGAA----VEEMVTLNNKNVQIVDTT 126 (237)
Q Consensus 102 irAHGv~----~~v~~~l~~~g~~ivDaT 126 (237)
-=||.|+ .++.+.|++.|+.|.+.+
T Consensus 96 ~Ia~~Vg~rKR~~I~~rA~el~ikV~N~~ 124 (125)
T PRK08562 96 RIASTVGKRKRLEILKKARELGIKVLNPG 124 (125)
T ss_pred EEeccccchhHHHHHHHHHHhCCcccCCC
Confidence 3488887 577899999999987653
No 192
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=24.73 E-value=2.5e+02 Score=22.83 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCC-c--EEeCc--ChhhHHHHHHHHHHhh
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV-Q--IVDTT--CPWVSKVWTSVEKHKK 142 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~-~--ivDaT--CP~V~kv~~~v~~~~~ 142 (237)
+.+++.|+++|+.+.-- .|| -.......+++.|+ . +.--. =|.=+-..+.++++..
T Consensus 133 ~~~l~~L~~~Gi~~~i~-----------TGD--------~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~ 193 (215)
T PF00702_consen 133 KEALQELKEAGIKVAIL-----------TGD--------NESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQV 193 (215)
T ss_dssp HHHHHHHHHTTEEEEEE-----------ESS--------EHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTC
T ss_pred hhhhhhhhccCcceeee-----------ecc--------ccccccccccccccccccccccccccccchhHHHHHHHHhc
Confidence 67888888899865421 133 12344555556666 2 33222 2555555677777775
Q ss_pred CCCeEEEEecC
Q 026546 143 GDYTSIIHGKY 153 (237)
Q Consensus 143 ~Gy~ivIiG~~ 153 (237)
++..++.+||.
T Consensus 194 ~~~~v~~vGDg 204 (215)
T PF00702_consen 194 KPGEVAMVGDG 204 (215)
T ss_dssp TGGGEEEEESS
T ss_pred CCCEEEEEccC
Confidence 77799999974
No 193
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=24.73 E-value=3e+02 Score=20.72 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=51.3
Q ss_pred CceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHH
Q 026546 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVW 134 (237)
Q Consensus 56 ~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~i-vDaTCP~V~kv~ 134 (237)
.+|++.. .|+.-.+.+++.|...+-+. .+.+ ...++.+....+|+.+ +|++. +....
T Consensus 15 ~~vi~~~---~~~~k~~~~~~~Ga~~~~~~---------~~~~--------~~~~i~~~~~~~~~d~vid~~g--~~~~~ 72 (130)
T PF00107_consen 15 AKVIATD---RSEEKLELAKELGADHVIDY---------SDDD--------FVEQIRELTGGRGVDVVIDCVG--SGDTL 72 (130)
T ss_dssp SEEEEEE---SSHHHHHHHHHTTESEEEET---------TTSS--------HHHHHHHHTTTSSEEEEEESSS--SHHHH
T ss_pred CEEEEEE---CCHHHHHHHHhhcccccccc---------cccc--------cccccccccccccceEEEEecC--cHHHH
Confidence 5676665 68888888888885433210 1122 2333333333357777 69988 34678
Q ss_pred HHHHHHhhCCCeEEEEecCC
Q 026546 135 TSVEKHKKGDYTSIIHGKYS 154 (237)
Q Consensus 135 ~~v~~~~~~Gy~ivIiG~~~ 154 (237)
+.+-++.+.|=+++++|-..
T Consensus 73 ~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 73 QEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHhccCCEEEEEEccC
Confidence 88888999999999999887
No 194
>PRK10658 putative alpha-glucosidase; Provisional
Probab=24.67 E-value=2.4e+02 Score=29.20 Aligned_cols=63 Identities=16% Similarity=0.036 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCC-------------------cEEeCcCh
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV-------------------QIVDTTCP 128 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~-------------------~ivDaTCP 128 (237)
+..+++|+++|++++-..+ +. -......++++.++|+ .++|-|-|
T Consensus 328 ~~mi~~L~~~G~k~~~~i~---------P~-------i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp 391 (665)
T PRK10658 328 EGMLKRLKAKGLKICVWIN---------PY-------IAQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNP 391 (665)
T ss_pred HHHHHHHHHCCCEEEEecc---------CC-------cCCCchHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCH
Confidence 4577999999999874321 00 0112244555555543 56999999
Q ss_pred hhHHHHH-HHHHHhhCCCe
Q 026546 129 WVSKVWT-SVEKHKKGDYT 146 (237)
Q Consensus 129 ~V~kv~~-~v~~~~~~Gy~ 146 (237)
-+.+-|. ..+++.+.|..
T Consensus 392 ~ar~W~~~~~~~l~d~Gvd 410 (665)
T PRK10658 392 DACKWYADKLKGLLDMGVD 410 (665)
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 9888764 45566666643
No 195
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=24.56 E-value=99 Score=27.68 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=46.6
Q ss_pred cccccCCCEEEEcCCCCCHHHHHHHHh-cCCcEEeCcChhhHHHHHHHHHHh-hCCCeEEEEecCCCcceeeeccc
Q 026546 91 FDVVNKGDVVVLPAFGAAVEEMVTLNN-KNVQIVDTTCPWVSKVWTSVEKHK-KGDYTSIIHGKYSHEETVATASF 164 (237)
Q Consensus 91 ~~~v~~g~~VIirAHGv~~~v~~~l~~-~g~~ivDaTCP~V~kv~~~v~~~~-~~Gy~ivIiG~~~HpEv~g~~g~ 164 (237)
.+-+++|++|+|-+=-..-.+.+.|.. +++.|| |..+. .+..+. ..+.+++++|=.-+|+..++.|.
T Consensus 86 a~~I~~g~tIflD~GtT~~~la~~L~~~~~ltVv-TNsl~------ia~~l~~~~~~~villGG~~~~~~~~~~G~ 154 (252)
T PRK10906 86 ASQIPNGATLFIDIGTTPEAVAHALLNHSNLRIV-TNNLN------VANTLMAKEDFRIILAGGELRSRDGGIIGE 154 (252)
T ss_pred HhhCCCCCEEEEcCcHHHHHHHHHhcCCCCcEEE-ECcHH------HHHHHhhCCCCEEEEECCEEecCCCccCCH
Confidence 445678998888876666677777755 478777 44333 334443 46789999998888888888764
No 196
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=24.52 E-value=5.1e+02 Score=23.80 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=41.7
Q ss_pred hhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEE-cCCCCCHHHHHHH---HhcCCcEE---
Q 026546 51 KQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVL-PAFGAAVEEMVTL---NNKNVQIV--- 123 (237)
Q Consensus 51 ~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIi-rAHGv~~~v~~~l---~~~g~~iv--- 123 (237)
++.+.++||++| .+...+.|++.|+..+++. +. ..-|.|++ .-.=.+.+-+.++ ..+|...|
T Consensus 87 ~~~~~~kv~viG----~~~l~~~l~~~G~~~~~~~------~~-~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tN 155 (269)
T COG0647 87 KQKPGKKVYVIG----EEGLKEELEGAGFELVDEE------EP-ARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATN 155 (269)
T ss_pred hhCCCCEEEEEC----CcchHHHHHhCCcEEeccC------CC-CcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeC
Confidence 334446899999 6788899999999988742 11 11134444 3333455544332 34677775
Q ss_pred -eCcCh
Q 026546 124 -DTTCP 128 (237)
Q Consensus 124 -DaTCP 128 (237)
|.|||
T Consensus 156 pD~~~p 161 (269)
T COG0647 156 PDLTVP 161 (269)
T ss_pred CCcccc
Confidence 77885
No 197
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=24.31 E-value=77 Score=27.86 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=32.3
Q ss_pred cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEe
Q 026546 93 VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (237)
Q Consensus 93 ~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG 151 (237)
.+|++....+..-| +|...-.+-..|+.++|++-|. ++++.|.-...-|
T Consensus 109 ~lp~~~pr~l~G~~-~P~~i~~~v~~GvD~fDs~~p~---------~~A~~G~al~~~~ 157 (238)
T PF01702_consen 109 NLPPDKPRYLLGVG-TPEEILEAVYLGVDLFDSSYPT---------RLARHGIALTFDG 157 (238)
T ss_dssp CS-TTS-EEETTB--SHHHHHHHHHTT--EEEESHHH---------HHHHTTEEEETTE
T ss_pred hCCcccceeccCCC-CHHHHHHHHHcCCcEEcchHHH---------HHHhcceeecccc
Confidence 46666667774444 7888888889999999999774 4567787666555
No 198
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=24.16 E-value=1.1e+02 Score=23.80 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=34.7
Q ss_pred cccchhHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEe
Q 026546 3 QEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWIT 61 (237)
Q Consensus 3 ~~~~s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~l 61 (237)
+.|=++.|..|++.|..+..++|.=.+-...-=|+ .+++.+.++.-+.+-.+|++.
T Consensus 18 s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~---~~i~~~~e~~~~~G~~Rv~t~ 73 (97)
T TIGR00106 18 SSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELF---EAIKAIHEAVLEKGSDRVYTS 73 (97)
T ss_pred HHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHH---HHHHHHHHHHHHcCCCeEEEE
Confidence 35778899999999999999999655543333232 244444444433222456654
No 199
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=24.15 E-value=2.5e+02 Score=19.48 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=44.6
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA 104 (237)
++++-....++|.-++++++- . +-=|..-.|-=|+...+.|++.|...++.. .+ +|+. .-
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~-------~--~i~~~~~di~~~~~~~~~~~~~g~~~vP~v-------~~-~g~~---~~ 60 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE-------H--GIAFEEINIDEQPEAIDYVKAQGFRQVPVI-------VA-DGDL---SW 60 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-------C--CCceEEEECCCCHHHHHHHHHcCCcccCEE-------EE-CCCc---EE
Confidence 356667788899888887752 2 123555566668888899988887666531 11 2321 23
Q ss_pred CCCCHHHHHHH
Q 026546 105 FGAAVEEMVTL 115 (237)
Q Consensus 105 HGv~~~v~~~l 115 (237)
-|..|+.+.+|
T Consensus 61 ~G~~~~~~~~~ 71 (72)
T TIGR02194 61 SGFRPDKLKAL 71 (72)
T ss_pred eccCHHHHHhc
Confidence 46777766654
No 200
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=24.11 E-value=1.8e+02 Score=24.50 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=48.8
Q ss_pred CceEEecccccCH-----HHHHHHHhcCcEEecCCcc--------c---cccccccCC-CE-EEEcCCCCCHHHHHHHHh
Q 026546 56 EKIWITNEIIHNP-----TVNKRLEEMAVQNIPVEEG--------K---KQFDVVNKG-DV-VVLPAFGAAVEEMVTLNN 117 (237)
Q Consensus 56 ~~vy~lgeiIHN~-----~Vv~~L~~~Gv~~v~~~~~--------~---~~~~~v~~g-~~-VIirAHGv~~~v~~~l~~ 117 (237)
+.|-+.| +-+|| .|.+.|.++|-.+++-... . .++.++|+. |+ -+||.-=.-|++.+++-+
T Consensus 17 K~IAvVG-~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~~i~~eal~ 95 (140)
T COG1832 17 KTIAVVG-ASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAAPEVAREALE 95 (140)
T ss_pred ceEEEEe-cCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhhHHHHHHHHh
Confidence 4677776 45666 5899999999998875441 1 367788752 44 489988888888888888
Q ss_pred cCCcEE
Q 026546 118 KNVQIV 123 (237)
Q Consensus 118 ~g~~iv 123 (237)
+|.+++
T Consensus 96 ~~~kv~ 101 (140)
T COG1832 96 KGAKVV 101 (140)
T ss_pred hCCCeE
Confidence 886665
No 201
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.10 E-value=3e+02 Score=26.68 Aligned_cols=72 Identities=8% Similarity=0.076 Sum_probs=38.9
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHhc--CcEEecCCccccccccccCCCEEEEcCCCCCH------HHHHHHH
Q 026546 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV------EEMVTLN 116 (237)
Q Consensus 45 ~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~------~v~~~l~ 116 (237)
+|.-+.+. + -.|+..-. -.++...+.|++. |+.+..... ..+.+.+-|.||++.+ +++ ....+++
T Consensus 22 ~a~~L~~~-G-~~v~~~D~-~~~~~~~~~L~~~~~~~~~~~g~~---~~~~~~~~d~vv~sp~-I~~~~~~~~~~~~~a~ 94 (498)
T PRK02006 22 MARWCARH-G-ARLRVADT-REAPPNLAALRAELPDAEFVGGPF---DPALLDGVDLVALSPG-LSPLEAALAPLVAAAR 94 (498)
T ss_pred HHHHHHHC-C-CEEEEEcC-CCCchhHHHHHhhcCCcEEEeCCC---chhHhcCCCEEEECCC-CCCcccccCHHHHHHH
Confidence 44444443 2 34554432 2243345668887 566543210 1122333466766654 876 6777888
Q ss_pred hcCCcEE
Q 026546 117 NKNVQIV 123 (237)
Q Consensus 117 ~~g~~iv 123 (237)
++|+.|+
T Consensus 95 ~~~i~v~ 101 (498)
T PRK02006 95 ERGIPVW 101 (498)
T ss_pred HCCCcEE
Confidence 8888876
No 202
>PRK10426 alpha-glucosidase; Provisional
Probab=24.07 E-value=2.8e+02 Score=28.52 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-------------------EEeCcCh
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-------------------IVDTTCP 128 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~-------------------ivDaTCP 128 (237)
+..+++|.++|++++-.. -|.-......+++++++|+- ++|-|-|
T Consensus 272 ~~mi~~L~~~G~k~v~~i----------------~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp 335 (635)
T PRK10426 272 DSRIKQLNEEGIQFLGYI----------------NPYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNP 335 (635)
T ss_pred HHHHHHHHHCCCEEEEEE----------------cCccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCH
Confidence 478899999999988431 11111133567777776643 5889999
Q ss_pred hhHHHHHH-HH-HHhhCCCeE
Q 026546 129 WVSKVWTS-VE-KHKKGDYTS 147 (237)
Q Consensus 129 ~V~kv~~~-v~-~~~~~Gy~i 147 (237)
-+..-|.. ++ .+.+.|..-
T Consensus 336 ~ar~Ww~~~~~~~~~~~Gvdg 356 (635)
T PRK10426 336 EAYEWFKEVIKKNMIGLGCSG 356 (635)
T ss_pred HHHHHHHHHHHHHHhhcCCCE
Confidence 99988844 43 455656443
No 203
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=24.04 E-value=2.5e+02 Score=21.32 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH---HhcCCcEEeCcC
Q 026546 94 VNKGDV-VVLPAFGAAVEEMVTL---NNKNVQIVDTTC 127 (237)
Q Consensus 94 v~~g~~-VIirAHGv~~~v~~~l---~~~g~~ivDaTC 127 (237)
+.++|. ++|+--|-++++.+.+ +++|+++|=-|+
T Consensus 45 ~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 45 VTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 445665 5688889999886655 344444443333
No 204
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.03 E-value=3.4e+02 Score=24.97 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc--------------------EEeCcC
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ--------------------IVDTTC 127 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~--------------------ivDaTC 127 (237)
+..+++|+++|++++ ..|-|+-...-..+++++++|+- ++|-|=
T Consensus 76 ~~mi~~L~~~g~k~~----------------~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftn 139 (317)
T cd06599 76 AAFVAKFHERGIRLA----------------PNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTN 139 (317)
T ss_pred HHHHHHHHHCCCEEE----------------EEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCC
Q ss_pred hhhHHHH-HHH-HHHhhCCC
Q 026546 128 PWVSKVW-TSV-EKHKKGDY 145 (237)
Q Consensus 128 P~V~kv~-~~v-~~~~~~Gy 145 (237)
|-...-| +.. +.+.+.|.
T Consensus 140 p~a~~ww~~~~~~~~~~~Gv 159 (317)
T cd06599 140 PEGREWWKEGVKEALLDLGI 159 (317)
T ss_pred hHHHHHHHHHHHHHHhcCCC
No 205
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.01 E-value=2.5e+02 Score=21.37 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=24.3
Q ss_pred HHHHHHHhcCcEEecCCccc--c------------cccccc--CCCEEEEcCCCCCHHHHH
Q 026546 69 TVNKRLEEMAVQNIPVEEGK--K------------QFDVVN--KGDVVVLPAFGAAVEEMV 113 (237)
Q Consensus 69 ~Vv~~L~~~Gv~~v~~~~~~--~------------~~~~v~--~g~~VIirAHGv~~~v~~ 113 (237)
.|.+.|+++|..+++=.+.. + ++-.+. .....||.|.|-|++...
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~ 72 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIV 72 (80)
T ss_pred HHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHH
Confidence 46677778887776532111 1 111111 123467889998876543
No 206
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=23.96 E-value=4.6e+02 Score=23.58 Aligned_cols=66 Identities=14% Similarity=0.353 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhC-CCCceEEecccc-cCHHHH----HHHHhcCcE----EecCCc-cccccccccCCCEEEEcC
Q 026546 39 VERAVQIAYEARKQF-PEEKIWITNEII-HNPTVN----KRLEEMAVQ----NIPVEE-GKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 39 V~RAv~~a~~a~~~~-~~~~vy~lgeiI-HN~~Vv----~~L~~~Gv~----~v~~~~-~~~~~~~v~~g~~VIirA 104 (237)
+.+|+++..++++++ |..-+|.++..+ |.-.+- +.|++.||. .++..+ ..+.++-+-.+|.+||..
T Consensus 112 t~~Al~lil~~lk~~~~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~lvk~~D~eLk~~e~VaTsD~~IIds 188 (211)
T COG2454 112 TDKALDLLLEFLKDVEPKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASLVKNADFELKELEVVATSDSGIIDS 188 (211)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEeccCcCHHHHhcCceeecCeeeeee
Confidence 678999999988875 445699999999 554443 344556665 554422 122334343455555544
No 207
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=23.94 E-value=3.7e+02 Score=21.37 Aligned_cols=19 Identities=16% Similarity=0.004 Sum_probs=11.0
Q ss_pred HHHHHhhC-CCeEEEEecCC
Q 026546 136 SVEKHKKG-DYTSIIHGKYS 154 (237)
Q Consensus 136 ~v~~~~~~-Gy~ivIiG~~~ 154 (237)
..+++.++ ...++.+||..
T Consensus 153 ~~~~~~~~~~~~~i~iGD~~ 172 (188)
T TIGR01489 153 VIHKLSEPKYQHIIYIGDGV 172 (188)
T ss_pred HHHHHHhhcCceEEEECCCc
Confidence 33444444 67788888653
No 208
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=23.86 E-value=67 Score=29.31 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=34.6
Q ss_pred HHHHHHhhCCCeEEEEecCCCcceeeeccccCeeEEEcChhhHHhhhhhhcCCccCCCCchHHHHHHHHHhhh
Q 026546 135 TSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAV 207 (237)
Q Consensus 135 ~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~~~e~~~~~~~~~~~q~~~~~~~~~~f~~~f~~~~ 207 (237)
..++++.+.|-+|||-|...--=-++...+-+=+..|.|..|. .+.++|++..++.+
T Consensus 20 ~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~----------------~~~~~lvewLkk~~ 76 (245)
T COG3967 20 ALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADR----------------DSRRELVEWLKKEY 76 (245)
T ss_pred HHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccch----------------hhHHHHHHHHHhhC
Confidence 3567788888888888865432222223332223455666655 34678888888777
No 209
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=23.86 E-value=1.8e+02 Score=20.90 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHH
Q 026546 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWT 135 (237)
Q Consensus 105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~ 135 (237)
-++.+.....|+++|++++-+.+.-+..+-+
T Consensus 60 ~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~ 90 (94)
T PF02579_consen 60 GGIGEGAFRALKEAGIKVYQGAGGDIEEALE 90 (94)
T ss_dssp SCSCHHHHHHHHHTTSEEEESTSSBHHHHHH
T ss_pred eCCCHHHHHHHHHCCCEEEEcCCCCHHHHHH
Confidence 3478999999999999999987776665543
No 210
>PRK05290 hybrid cluster protein; Provisional
Probab=23.80 E-value=1.1e+02 Score=31.21 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=42.3
Q ss_pred ceEEecccccCHHHHHHHHh----cCcEEecCCccccccccccCCCEEEEcCCCCCH-----------------HHHHHH
Q 026546 57 KIWITNEIIHNPTVNKRLEE----MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV-----------------EEMVTL 115 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L~~----~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~-----------------~v~~~l 115 (237)
.|.+.| |+|...+.|-+ +||.+.. .+. +++|||+|. +..+.+
T Consensus 237 ~IlVsG---Hd~~~le~ll~qt~~~GInvyt------------h~E--mLpahgyP~lkky~hl~Gn~g~aW~~Q~~Ef~ 299 (546)
T PRK05290 237 GILVSG---HDLKDLEELLEQTEGTGINVYT------------HGE--MLPAHGYPELKKYPHLVGNYGSAWQNQQKEFA 299 (546)
T ss_pred eEEEEC---CChHHHHHHHHHhcCCCeEEec------------Cch--hhhhccCchhccCCcccccchhhhhhhhHHHH
Confidence 477777 99999998844 4776663 233 678999998 245555
Q ss_pred HhcCCcEEeCcChhhH
Q 026546 116 NNKNVQIVDTTCPWVS 131 (237)
Q Consensus 116 ~~~g~~ivDaTCP~V~ 131 (237)
.--|..++|+-|-+-.
T Consensus 300 ~~~Gaiv~t~nCi~p~ 315 (546)
T PRK05290 300 SFPGPILMTTNCIIPP 315 (546)
T ss_pred hCCCCEEEeccCCcCC
Confidence 6689999999995433
No 211
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.50 E-value=3.6e+02 Score=25.45 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=61.4
Q ss_pred HHHHHHHhhCCCCceEEecc-cccCHHHHHHHHhcCcEEecCCccccccccccC-CCEEEEcCCCCCHH--HHHHHHhcC
Q 026546 44 QIAYEARKQFPEEKIWITNE-IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE--EMVTLNNKN 119 (237)
Q Consensus 44 ~~a~~a~~~~~~~~vy~lge-iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~-g~~VIirAHGv~~~--v~~~l~~~g 119 (237)
.+|...++. + -.|+.... .-......+.|++.|+.+..... ..+.+.+ -|.||.++ |+++. ..++++++|
T Consensus 19 s~a~~l~~~-G-~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~---~~~~~~~~~d~vV~s~-gi~~~~~~~~~a~~~~ 92 (447)
T PRK02472 19 AAAKLLHKL-G-ANVTVNDGKPFSENPEAQELLEEGIKVICGSH---PLELLDEDFDLMVKNP-GIPYTNPMVEKALEKG 92 (447)
T ss_pred HHHHHHHHC-C-CEEEEEcCCCccchhHHHHHHhcCCEEEeCCC---CHHHhcCcCCEEEECC-CCCCCCHHHHHHHHCC
Confidence 345555553 2 35666541 12233456789999998764211 1111122 46666665 77643 677888889
Q ss_pred CcEEe-----------------CcChhhHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 026546 120 VQIVD-----------------TTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (237)
Q Consensus 120 ~~ivD-----------------aTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpE 157 (237)
+.|+- .|+.-=+-..-...-+...|+...+.|.-+.|-
T Consensus 93 i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p~ 147 (447)
T PRK02472 93 IPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPA 147 (447)
T ss_pred CcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChhh
Confidence 88851 233333334444555666788888999876664
No 212
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=23.42 E-value=6.5e+02 Score=23.96 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=36.8
Q ss_pred ceEEecccccCHHHHHHHHhcCcEEecCCcccccccccc-CCCEEEEcCCCCCHH--HHHHHHhcCCcEE
Q 026546 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN-KGDVVVLPAFGAAVE--EMVTLNNKNVQIV 123 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~-~g~~VIirAHGv~~~--v~~~l~~~g~~iv 123 (237)
.|+. -+.-.|+...+.|+++|+.+.... +-+.+. +-| +|+-+=|+|+. ..+.++++|+.|+
T Consensus 25 ~V~~-~D~~~~~~~~~~l~~~gi~~~~~~----~~~~~~~~~d-~vV~SpgI~~~~~~~~~a~~~~i~v~ 88 (448)
T TIGR01081 25 EVTG-SDANVYPPMSTQLEAQGIEIIEGF----DAAQLEPKPD-LVVIGNAMKRGNPCVEAVLNLNLPYT 88 (448)
T ss_pred EEEE-ECCCCCcHHHHHHHHCCCEEeCCC----CHHHCCCCCC-EEEECCCCCCCCHHHHHHHHCCCCEE
Confidence 3443 333446655567999999886431 112232 245 55666688754 6777788888775
No 213
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=23.41 E-value=96 Score=25.45 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=28.2
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCC-------CCHHHH--------HHHHhcCCcEEeCcChhhHHHH
Q 026546 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG-------AAVEEM--------VTLNNKNVQIVDTTCPWVSKVW 134 (237)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHG-------v~~~v~--------~~l~~~g~~ivDaTCP~V~kv~ 134 (237)
+++-|++.|+.++ .||+|.+| +|++.+ ..+++.|..|+|-+
T Consensus 41 ~L~~~k~~g~~~l----------------fVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s-------- 96 (130)
T PF04914_consen 41 LLDVCKELGIDVL----------------FVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFS-------- 96 (130)
T ss_dssp HHHHHHHTT-EEE----------------EEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-T--------
T ss_pred HHHHHHHcCCceE----------------EEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecc--------
Confidence 5566667777655 48888887 566654 44556666666643
Q ss_pred HHHHHHhhCCCeEEEEecCCCc
Q 026546 135 TSVEKHKKGDYTSIIHGKYSHE 156 (237)
Q Consensus 135 ~~v~~~~~~Gy~ivIiG~~~Hp 156 (237)
..+|.--.+.|.-|+
T Consensus 97 -------~~~y~~yfm~D~iHl 111 (130)
T PF04914_consen 97 -------DDEYEPYFMQDTIHL 111 (130)
T ss_dssp -------TGTTSTTSBSSSSSB
T ss_pred -------cCCCCCceeeecccC
Confidence 455555566777775
No 214
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=23.38 E-value=77 Score=23.06 Aligned_cols=8 Identities=38% Similarity=0.601 Sum_probs=5.6
Q ss_pred CCCEEEEc
Q 026546 96 KGDVVVLP 103 (237)
Q Consensus 96 ~g~~VIir 103 (237)
+||+|.|-
T Consensus 56 ~GD~V~Ig 63 (69)
T TIGR03595 56 DGDTVRIG 63 (69)
T ss_pred CCCEEEEc
Confidence 57888763
No 215
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=23.30 E-value=77 Score=29.90 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=27.5
Q ss_pred CCEEEE-cCCCCCHHHHHHHHhcCCcEEeCcChh
Q 026546 97 GDVVVL-PAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 97 g~~VIi-rAHGv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
=|.|++ --||++.+...++.+.|+.|||.+=.|
T Consensus 70 ~D~vf~a~p~~~s~~~~~~~~~~g~~VIDlS~~f 103 (344)
T PLN02383 70 VDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAF 103 (344)
T ss_pred CCEEEECCCcHHHHHHHHHHHhCCCEEEECCchh
Confidence 477777 459999999999999999999998544
No 216
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=23.20 E-value=1.6e+02 Score=30.91 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=44.4
Q ss_pred CCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 026546 32 SYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 32 ~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~ 83 (237)
.-.|-.-|-|+|..+-++.++. +.||.+-|++--||....-|-.+|+.-+.
T Consensus 640 ~~~~~Pavlr~i~~~~~~a~~~-g~~v~vCGe~a~dp~~~~~L~glGi~~lS 690 (748)
T PRK11061 640 YDSLHPAMLRALKMIADEAEQH-GLPVSLCGEMAGDPMGALLLIGLGYRHLS 690 (748)
T ss_pred cCCCCHHHHHHHHHHHHHHhhC-cCEEEEcCCcccCHHHHHHHHHCCCcEEc
Confidence 3456778999999998888765 47999999999999999999999998764
No 217
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=23.14 E-value=5.6e+02 Score=24.06 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=50.4
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcC----cEEecCCcccccc-ccccCCCE
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA----VQNIPVEEGKKQF-DVVNKGDV 99 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~G----v~~v~~~~~~~~~-~~v~~g~~ 99 (237)
.+|+-....+---|++..++.+....++.++-.+.+.|.==-.+...+..++.| |.|....+. +++ +-+..-|.
T Consensus 223 ~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~-~el~~~l~~aDv 301 (406)
T PRK15427 223 LEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPS-HEVKAMLDDADV 301 (406)
T ss_pred eEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCH-HHHHHHHHhCCE
Confidence 345545555666788888888776665444334566663211233333445555 333322110 111 11223577
Q ss_pred EEEcCC--------CCCHHHHHHHHhcCCcEE
Q 026546 100 VVLPAF--------GAAVEEMVTLNNKNVQIV 123 (237)
Q Consensus 100 VIirAH--------Gv~~~v~~~l~~~g~~iv 123 (237)
.+++++ |.|-.+++.+ ..|+.||
T Consensus 302 ~v~pS~~~~~g~~Eg~p~~llEAm-a~G~PVI 332 (406)
T PRK15427 302 FLLPSVTGADGDMEGIPVALMEAM-AVGIPVV 332 (406)
T ss_pred EEECCccCCCCCccCccHHHHHHH-hCCCCEE
Confidence 778774 5655555555 5566666
No 218
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=22.93 E-value=1.5e+02 Score=26.56 Aligned_cols=48 Identities=25% Similarity=0.434 Sum_probs=35.2
Q ss_pred HHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCC
Q 026546 69 TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120 (237)
Q Consensus 69 ~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~ 120 (237)
.|-..|++.|..+.=. ++.+++..-|.+|+|-=|.=++.++.|+++|+
T Consensus 16 Sv~~Aler~G~~~~vs----~d~~~i~~AD~liLPGVGaf~~am~~L~~~gl 63 (204)
T COG0118 16 SVKKALERLGAEVVVS----RDPEEILKADKLILPGVGAFGAAMANLRERGL 63 (204)
T ss_pred HHHHHHHHcCCeeEEe----cCHHHHhhCCEEEecCCCCHHHHHHHHHhcch
Confidence 4556677777554321 14566666789999999999999999999875
No 219
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=22.80 E-value=5.8e+02 Score=24.72 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=49.5
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHH---HHHHHhcCcEEe--cCCcccccccc-ccCCC-EEEEcCCCC
Q 026546 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTV---NKRLEEMAVQNI--PVEEGKKQFDV-VNKGD-VVVLPAFGA 107 (237)
Q Consensus 35 FC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~V---v~~L~~~Gv~~v--~~~~~~~~~~~-v~~g~-~VIirAHGv 107 (237)
|..|. -|+.++..++-+ ++..|.+ ....|.... .+.|++.|+.+. +...+.+.+.. +.++- .|++-..+=
T Consensus 90 fsSG~-~Ai~~al~~ll~-~Gd~VI~-~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~N 166 (437)
T PRK05613 90 FASGQ-AAETAAILNLAG-AGDHIVT-SPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFAN 166 (437)
T ss_pred eCCHH-HHHHHHHHHhcC-CCCEEEE-CCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCC
Confidence 34566 677776655432 3334544 466787653 467788898754 42111112221 22232 344545553
Q ss_pred C-------HHHHHHHHhcCCcE-EeCcC
Q 026546 108 A-------VEEMVTLNNKNVQI-VDTTC 127 (237)
Q Consensus 108 ~-------~~v~~~l~~~g~~i-vDaTC 127 (237)
+ +++.+.++++|+.+ +|+|.
T Consensus 167 p~~~v~di~~I~~la~~~gi~livD~t~ 194 (437)
T PRK05613 167 PQADVLDIPAVAEVAHRNQVPLIVDNTI 194 (437)
T ss_pred CCCcccCHHHHHHHHHHcCCeEEEECCC
Confidence 3 55667778888755 99995
No 220
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=22.65 E-value=4.3e+02 Score=28.84 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=32.8
Q ss_pred CHHHHHHHHhcCCcEEeC----cCh------------hhHHHHHHHHHHhhCCCeEEEEecCCCcceeee
Q 026546 108 AVEEMVTLNNKNVQIVDT----TCP------------WVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT 161 (237)
Q Consensus 108 ~~~v~~~l~~~g~~ivDa----TCP------------~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~ 161 (237)
+|..++.+.+.|+-|+|= ||. |-....++++++.++ ++|||-|+.=
T Consensus 396 ~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~~~~~~~~~~~~mV~R--------drNHPSIi~W 457 (1027)
T PRK09525 396 HPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPRWLPAMSERVTRMVQR--------DRNHPSIIIW 457 (1027)
T ss_pred CHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEE
Confidence 589999999999999876 332 334566777777766 4578877554
No 221
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=22.55 E-value=4.6e+02 Score=21.94 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCcEEeCcC-------hhhHHHHHHHHHHhhCCC-eEEEEecCCCcceeeeccccC-eeEEEcChhhHHh
Q 026546 109 VEEMVTLNNKNVQIVDTTC-------PWVSKVWTSVEKHKKGDY-TSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEY 179 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDaTC-------P~V~kv~~~v~~~~~~Gy-~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~~ 179 (237)
..+.+.|+++|+.|+|-.| +|.--.++.++...+.-+ .=|++.-.+--.-++..=+.+ .+-++.|...++.
T Consensus 16 ~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaANK~~GiRAA~~~d~~sA~~ 95 (148)
T TIGR02133 16 EALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEAIAANKVKGARAALAWDTASAGR 95 (148)
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhheeeecccCCeEEEEECCHHHHHH
Confidence 4568899999999999775 466666766666644322 333333232222221111111 2355666666654
Q ss_pred h-----hhhhc-CCccCCCCchHHHHHHHHHhhhcCCCCC-CCCCcceEE
Q 026546 180 V-----CDYIL-GGELNGSSSTKEAFLEKFKKAVSKGFDP-DVDLVKVGI 222 (237)
Q Consensus 180 ~-----~~~~~-~~q~~~~~~~~~~f~~~f~~~~s~gfdp-~~~l~~v~v 222 (237)
- ++.+. +..+.+ .....+.++.| ++-.|++ .++..||.-
T Consensus 96 ar~hNnaNVl~lG~r~ig-~~~a~~iv~~f---l~t~f~~ggrh~~Rv~~ 141 (148)
T TIGR02133 96 ARLHNNANVVGAGMRMHG-LEEAFRLVFEF---LGFEFDARSRHARRIDS 141 (148)
T ss_pred HHHHcCCcEEEECCcccC-HHHHHHHHHHH---HCCCCCCCCchHHHHHH
Confidence 3 23222 222221 13333444555 6677875 466666543
No 222
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=22.32 E-value=99 Score=22.34 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=20.8
Q ss_pred CCcceeeeccccCeeEE-EcChhhHHhhhhhh
Q 026546 154 SHEETVATASFAGKYII-VKNMKEAEYVCDYI 184 (237)
Q Consensus 154 ~HpEv~g~~g~a~~~~v-v~~~~e~~~~~~~~ 184 (237)
+.||+.||.+=-+..+| .++.++++.+.+++
T Consensus 36 ~~~~I~GtIAgdDTilvi~~~~~~a~~l~~~l 67 (70)
T PF02863_consen 36 NLPEIFGTIAGDDTILVICRSEEDAEELEEKL 67 (70)
T ss_dssp CGTTEEEEEEESSEEEEEESTTSHHHHHHHHH
T ss_pred CCcccEEEEeCCCEEEEEeCCHHHHHHHHHHH
Confidence 34788888765455544 48888888776554
No 223
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=22.25 E-value=5.4e+02 Score=22.56 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=27.6
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecc
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNE 63 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lge 63 (237)
..+......+..-|++..++.+.+..++.++-.+.+.|.
T Consensus 189 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~ 227 (367)
T cd05844 189 PRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGD 227 (367)
T ss_pred cEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 356556666777888888888877766555456777885
No 224
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=22.06 E-value=43 Score=26.11 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=26.1
Q ss_pred cccccCCCEEEE-cCCCCCHHHHHHHHhcCCcEEeCc
Q 026546 91 FDVVNKGDVVVL-PAFGAAVEEMVTLNNKNVQIVDTT 126 (237)
Q Consensus 91 ~~~v~~g~~VIi-rAHGv~~~v~~~l~~~g~~ivDaT 126 (237)
.+++.+-|.|++ -.|+++++....+.++|+.|||.+
T Consensus 61 ~~~~~~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s 97 (121)
T PF01118_consen 61 PEELSDVDVVFLALPHGASKELAPKLLKAGIKVIDLS 97 (121)
T ss_dssp GHHHTTESEEEE-SCHHHHHHHHHHHHHTTSEEEESS
T ss_pred hhHhhcCCEEEecCchhHHHHHHHHHhhCCcEEEeCC
Confidence 344545564433 345678999999999999999986
No 225
>PTZ00159 60S ribosomal protein L32; Provisional
Probab=21.98 E-value=1.6e+02 Score=24.58 Aligned_cols=48 Identities=10% Similarity=0.035 Sum_probs=32.5
Q ss_pred cccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCC----HHHHHHHHhcCCcEEeCcChh
Q 026546 64 IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA----VEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 64 iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~----~~v~~~l~~~g~~ivDaTCP~ 129 (237)
||||+.-.+.| +.+ .....+-=||.|+ .++.+.|++.|+.|.++.+-+
T Consensus 76 lV~N~keLe~L-------~m~-----------~~~~aa~Ia~~Vg~rKR~~I~~rA~eL~ikV~N~~arl 127 (133)
T PTZ00159 76 PVRNVKDLEML-------LMH-----------NRKYAAEIAHNVSARKRKAIVERAKELNVRVLNGNARL 127 (133)
T ss_pred EecCHHHHHHH-------hcC-----------CcceEEEEecccccchHHHHHHHHHHhCCcccCCCccc
Confidence 78999777766 111 1111233478887 577899999999999887543
No 226
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=21.70 E-value=1.3e+02 Score=29.07 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=49.0
Q ss_pred HHHHhhCCCeEEEEecCCCcceeeeccccCeeEEEcChhhHHhhhhhhcCC--ccCCCCchHHHHH----HHHHhhhcCC
Q 026546 137 VEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGG--ELNGSSSTKEAFL----EKFKKAVSKG 210 (237)
Q Consensus 137 v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~~~e~~~~~~~~~~~--q~~~~~~~~~~f~----~~f~~~~s~g 210 (237)
|..+.++||.|+=+=-++|.| .+-.+. ---++..|++.+|+.+-.. -+| -.++|. +-|-..+..|
T Consensus 20 A~lLk~QGyeViGl~m~~~~~-~~~~~C----~s~~d~~da~~va~~LGIp~~~vd----f~~~y~~~V~~~f~~~Y~~G 90 (356)
T COG0482 20 AYLLKEQGYEVIGLFMKNWDE-DGGGGC----CSEEDLRDAERVADQLGIPLYVVD----FEKEFWNKVFEYFLAEYKAG 90 (356)
T ss_pred HHHHHHcCCeEEEEEEEeecc-CCCCcC----CchhHHHHHHHHHHHhCCceEEEc----hHHHHHHHHHHHHHHHHhCC
Confidence 345778999998888888887 222121 2236778899998744221 001 133444 4666778889
Q ss_pred CCCCCCCcceEEEecccC
Q 026546 211 FDPDVDLVKVGIANQTTM 228 (237)
Q Consensus 211 fdp~~~l~~v~v~nQTTm 228 (237)
-.|.++. .+||+=|
T Consensus 91 ~TPNPci----~CN~~iK 104 (356)
T COG0482 91 KTPNPCI----LCNKEIK 104 (356)
T ss_pred CCCCcch----hcCHHHH
Confidence 8988766 5666544
No 227
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=21.51 E-value=1.1e+02 Score=28.45 Aligned_cols=58 Identities=26% Similarity=0.233 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCcEEecCCccc---cccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE--EeCcC
Q 026546 68 PTVNKRLEEMAVQNIPVEEGK---KQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTC 127 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~---~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~i--vDaTC 127 (237)
+...+-|+++|...++-.+.. -...-++.|..+|+.--+.+. .++|+++|++| +|.||
T Consensus 190 ~~~~~~lk~r~~~~I~Vpe~e~~~l~~n~v~~g~~~v~~~~~~~~--~e~L~~~GfeVi~~~~~e 252 (267)
T COG1834 190 EGANDVLKERGFELIEVPEEEAFALGCNVVSLGPNVVIALPRTPK--AEQLAAAGFEVIEVDLTE 252 (267)
T ss_pred hhHHHHHhhCCceEEecCHhHhhhhccceeecCCceeecCcccch--HHHHHhCCceEEecCHHH
Confidence 444567888887776532211 123344557777777777776 88999999999 55554
No 228
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.49 E-value=1.1e+02 Score=28.06 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCcEEec
Q 026546 68 PTVNKRLEEMAVQNIP 83 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~ 83 (237)
+..+++|+++|++++-
T Consensus 73 ~~mi~~l~~~G~k~~l 88 (303)
T cd06592 73 KGMIDQLHDLGFRVTL 88 (303)
T ss_pred HHHHHHHHHCCCeEEE
Confidence 5778899999999874
No 229
>PRK10150 beta-D-glucuronidase; Provisional
Probab=21.31 E-value=4.4e+02 Score=26.41 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=17.8
Q ss_pred CCCC-CHHHHHHHHhcCCcEEeC
Q 026546 104 AFGA-AVEEMVTLNNKNVQIVDT 125 (237)
Q Consensus 104 AHGv-~~~v~~~l~~~g~~ivDa 125 (237)
+|-- +++.++.+.+.|+-|+|=
T Consensus 333 sh~p~~~~~~~~cD~~GllV~~E 355 (604)
T PRK10150 333 SHYPYSEEMLDLADRHGIVVIDE 355 (604)
T ss_pred ccCCCCHHHHHHHHhcCcEEEEe
Confidence 4554 688999999999999864
No 230
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=21.24 E-value=2e+02 Score=24.18 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=36.2
Q ss_pred HHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCC
Q 026546 46 AYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA 108 (237)
Q Consensus 46 a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~ 108 (237)
+..+|+..+ .-+.|.+..-...-+.|++.|.+-+.+.. --++..||++|....|.+
T Consensus 35 V~~ALr~aG---~~~~g~~~nT~tl~~~L~~~G~~~I~~~~----~~~~q~GDI~I~g~~g~S 90 (145)
T PF05382_consen 35 VYQALRAAG---FKIPGSAGNTETLHDWLKKNGFKKISENV----DWNLQRGDIFIWGRRGNS 90 (145)
T ss_pred HHHHHHHcC---CCCCCCccCHHHHHHHHhhCCcEEeccCC----cccccCCCEEEEcCCCCC
Confidence 445555432 12346666666667789999998887521 125677999998777654
No 231
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=21.19 E-value=5e+02 Score=21.80 Aligned_cols=108 Identities=14% Similarity=0.241 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCcEEeCc-------ChhhHHHHHHHHHHhhC--CCeEEEEecCCCcceeeeccccC-eeEEEcChhhHH
Q 026546 109 VEEMVTLNNKNVQIVDTT-------CPWVSKVWTSVEKHKKG--DYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAE 178 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDaT-------CP~V~kv~~~v~~~~~~--Gy~ivIiG~~~HpEv~g~~g~a~-~~~vv~~~~e~~ 178 (237)
..+.+.|+++|+.|+|-. |.|..-.+..++...+. .+=|+|=| .+----++..=+-+ .+-++.|+..++
T Consensus 16 ~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCG-tGiG~siaANK~~GIRAA~~~d~~~A~ 94 (148)
T PRK05571 16 EEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICG-TGIGMSIAANKVKGIRAALCHDTYSAH 94 (148)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcC-CcHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 456889999999999964 56777777777766543 23344433 11110000000001 234556666655
Q ss_pred hh-----hhhhc-CCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceE
Q 026546 179 YV-----CDYIL-GGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVG 221 (237)
Q Consensus 179 ~~-----~~~~~-~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~ 221 (237)
.- ++.+. +..+.+ .....++++.| ++..|+..++..||.
T Consensus 95 ~ar~hNnaNVL~lG~r~ig-~~~a~~iv~~f---l~t~F~ggrh~~Rv~ 139 (148)
T PRK05571 95 LAREHNNANVLALGARVIG-PELAKDIVDAF---LATEFEGGRHQRRID 139 (148)
T ss_pred HHHHhcCCcEEEECccccC-HHHHHHHHHHH---HcCCCCCCcHHHHHH
Confidence 43 22222 222221 13334555555 556677556666654
No 232
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=21.18 E-value=5e+02 Score=23.21 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=41.4
Q ss_pred HHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCH-HHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCe-EEE
Q 026546 72 KRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV-EEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT-SII 149 (237)
Q Consensus 72 ~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~-~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~-ivI 149 (237)
+.+++.|+.+++-. -.- |+..-.----+++ +.++.+++.+. +.=|.||-+....+.-+++.++||. |+.
T Consensus 15 ~~~~~~~i~vvPl~-------i~~-~~~~y~D~~~i~~~efy~~l~~~~~-~p~TS~ps~~~~~~~f~~~~~~gyd~ii~ 85 (280)
T PF02645_consen 15 ELAEEYGIYVVPLN-------III-DGKEYRDGVDISPEEFYEKLRESGE-IPKTSQPSPGEFEEAFEKLLEEGYDEIIV 85 (280)
T ss_dssp HHHHHTTEEEE--E-------EEE-TTEEEETTTTSCHHHHHHHHHHTTS-EEEEE---HHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHhCCeEEEeEE-------Eec-CCeEEecCCCCCHHHHHHHHHhcCC-CceecCCCHHHHHHHHHHHHHCCCCeEEE
Confidence 45667788877631 010 1111111114454 55777756555 4459999999999999999999998 777
Q ss_pred Ee
Q 026546 150 HG 151 (237)
Q Consensus 150 iG 151 (237)
+.
T Consensus 86 i~ 87 (280)
T PF02645_consen 86 IT 87 (280)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 233
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=21.09 E-value=4.2e+02 Score=23.90 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=20.2
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 026546 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 44 ~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~ 83 (237)
.+|...++. +-+|++.. .++...+.+.+.|+...+
T Consensus 14 ~mA~~L~~~--g~~v~v~d---r~~~~~~~~~~~g~~~~~ 48 (301)
T PRK09599 14 NMARRLLRG--GHEVVGYD---RNPEAVEALAEEGATGAD 48 (301)
T ss_pred HHHHHHHHC--CCeEEEEE---CCHHHHHHHHHCCCeecC
Confidence 345554443 12455542 567777777777877654
No 234
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=21.01 E-value=1.3e+02 Score=21.98 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=17.2
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcEE
Q 026546 98 DVVVLPAFGAAVEEMVTLNNKNVQIV 123 (237)
Q Consensus 98 ~~VIirAHGv~~~v~~~l~~~g~~iv 123 (237)
++|+|=..-.+++..+.|+++|..+|
T Consensus 28 ~v~~iD~~~~~~~~I~~L~~~G~~vi 53 (74)
T PF03537_consen 28 DVVVIDLFDFSKEEIARLKAQGKKVI 53 (74)
T ss_dssp SEEEE-SBS--HHHHHHHHHTT-EEE
T ss_pred CEEEECCccCCHHHHHHHHHCCCEEE
Confidence 56677666688899999998887775
No 235
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=20.90 E-value=3.7e+02 Score=23.31 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=43.4
Q ss_pred HHHHHHHhcCcEEecCCccccccccccC-CCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCe
Q 026546 69 TVNKRLEEMAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT 146 (237)
Q Consensus 69 ~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~-g~~VIirAHGv~~~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~~~~~Gy~ 146 (237)
..+.-++.+|+.++-.....+..+.+.+ |..-++..+..+.+..+.+..+++.+ +|++.. .....+-++.+.+-+
T Consensus 162 ~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~---~~~~~~~~~l~~~g~ 238 (325)
T cd05280 162 IAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGG---DVLANLLKQTKYGGV 238 (325)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCch---HHHHHHHHhhcCCCE
Confidence 3456668889774421111111111111 32223444544334444555566655 776654 234444445555567
Q ss_pred EEEEecCCCcce
Q 026546 147 SIIHGKYSHEET 158 (237)
Q Consensus 147 ivIiG~~~HpEv 158 (237)
++.+|..++.++
T Consensus 239 ~v~~g~~~~~~~ 250 (325)
T cd05280 239 VASCGNAAGPEL 250 (325)
T ss_pred EEEEecCCCCcc
Confidence 899998766544
No 236
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=20.84 E-value=1.2e+02 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=18.9
Q ss_pred hhHHHHHHHcCCcceecceEEEEeCCCCCcc
Q 026546 7 SDIIKKLKENGFEYTWGNVKVKLAESYGFCW 37 (237)
Q Consensus 7 s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~ 37 (237)
..|.++++++|. ..+|+...-+||||
T Consensus 21 ~al~~ei~~~gl-----~v~v~~tGC~G~C~ 46 (92)
T cd03063 21 EAIEAEAAARGL-----AATIVRNGSRGMYW 46 (92)
T ss_pred HHHHHHHHHcCC-----eEEEEEecCceecC
Confidence 467778888876 46677777888886
No 237
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=20.72 E-value=3.1e+02 Score=28.80 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=41.9
Q ss_pred CHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCe
Q 026546 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146 (237)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ 146 (237)
-++.+++|+++|++++.= .|| -......-+++.|+.=+=|-|-=-.|+. .++++.++|++
T Consensus 542 a~~aI~~L~~~Gi~~~mL-----------TGD--------n~~~A~~iA~~lGId~v~AellPedK~~-~V~~l~~~g~~ 601 (713)
T COG2217 542 AKEAIAALKALGIKVVML-----------TGD--------NRRTAEAIAKELGIDEVRAELLPEDKAE-IVRELQAEGRK 601 (713)
T ss_pred HHHHHHHHHHCCCeEEEE-----------cCC--------CHHHHHHHHHHcChHhheccCCcHHHHH-HHHHHHhcCCE
Confidence 467788888888886642 233 1223344455556533335554444443 56778899999
Q ss_pred EEEEecCC
Q 026546 147 SIIHGKYS 154 (237)
Q Consensus 147 ivIiG~~~ 154 (237)
|..+||--
T Consensus 602 VamVGDGI 609 (713)
T COG2217 602 VAMVGDGI 609 (713)
T ss_pred EEEEeCCc
Confidence 99999853
No 238
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=20.66 E-value=2.2e+02 Score=25.48 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=21.6
Q ss_pred CCCEEEEcCCCC---CHHHHHHHHhcCCcEE
Q 026546 96 KGDVVVLPAFGA---AVEEMVTLNNKNVQIV 123 (237)
Q Consensus 96 ~g~~VIirAHGv---~~~v~~~l~~~g~~iv 123 (237)
+-|.|+..+||. .-.+...|+..|+.++
T Consensus 53 ~~D~v~~~~~g~~ge~~~~~~~le~~gip~~ 83 (299)
T PRK14571 53 SFDVVFNVLHGTFGEDGTLQAILDFLGIRYT 83 (299)
T ss_pred CCCEEEEeCCCCCCCccHHHHHHHHcCCCcc
Confidence 358899999997 4566777777888876
No 239
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.65 E-value=6.8e+02 Score=23.12 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=63.1
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec--CCcc--cc-ccccccC---
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEG--KK-QFDVVNK--- 96 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~--~~~~--~~-~~~~v~~--- 96 (237)
+-++..+|.=|+ |+..||+.+.... |.++|-+--+ |..-.....+.|+-.+. +-+. .+ -...+..
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~---~~~kIeVEv~---~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~~ 228 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFS---VYKVVEVEVE---SLEDALKAAKAGADIIMLDNMTPEEIREVIEALKREGL 228 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhC---CCCcEEEEeC---CHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHhcCc
Confidence 446778888898 9999998886533 3356666644 77666666677766553 2110 00 0111211
Q ss_pred -CCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChh
Q 026546 97 -GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 97 -g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
+.+.+.-|=|++++-..+..+.|+.+|.+..|+
T Consensus 229 ~~~~~leaSGGI~~~ni~~yA~tGvD~Is~galt 262 (278)
T PRK08385 229 RERVKIEVSGGITPENIEEYAKLDVDVISLGALT 262 (278)
T ss_pred CCCEEEEEECCCCHHHHHHHHHcCCCEEEeChhh
Confidence 345666677888888888888888888877665
No 240
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=20.62 E-value=92 Score=22.62 Aligned_cols=9 Identities=33% Similarity=0.590 Sum_probs=4.8
Q ss_pred cCCCEEEEc
Q 026546 95 NKGDVVVLP 103 (237)
Q Consensus 95 ~~g~~VIir 103 (237)
.+||+|.|-
T Consensus 55 ~~GD~V~Ig 63 (69)
T PF09269_consen 55 KEGDTVRIG 63 (69)
T ss_dssp -TT-EEEET
T ss_pred CCCCEEEEc
Confidence 358888763
No 241
>PF08052 PyrBI_leader: PyrBI operon leader peptide; InterPro: IPR012602 This family consists of the pyrBI operon leader peptides. The expression of the pyrBI operon, which encodes the subunits of the pyrimidine biosynthetic enzyme aspartate transcarbamylase. is regulated primarily through a UTP-sensitive transcriptional attenuation control mechanism. In this mechanism, the concentration of UTP determines the extent of coupling between transcription and translation within the pyrBI leader region, hence determining the level of rho-independent transcriptional termination at an attenuator preceding the pyrB gene [].; GO: 0019856 pyrimidine base biosynthetic process
Probab=20.62 E-value=24 Score=23.83 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=8.8
Q ss_pred eCCCCCcccHHH
Q 026546 30 AESYGFCWGVER 41 (237)
Q Consensus 30 A~~~GFC~GV~R 41 (237)
-+..=||-||+|
T Consensus 33 ~~g~ffcpgvrr 44 (44)
T PF08052_consen 33 NRGLFFCPGVRR 44 (44)
T ss_pred cCcceecccccC
Confidence 345569999986
No 242
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=20.59 E-value=2.4e+02 Score=26.71 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=40.3
Q ss_pred CCCCCcccHHHHHHHHHHHHhh--------CCCCceEEecccccCH--HHHHHHHhcCcEEecC
Q 026546 31 ESYGFCWGVERAVQIAYEARKQ--------FPEEKIWITNEIIHNP--TVNKRLEEMAVQNIPV 84 (237)
Q Consensus 31 ~~~GFC~GV~RAv~~a~~a~~~--------~~~~~vy~lgeiIHN~--~Vv~~L~~~Gv~~v~~ 84 (237)
-..+|+.+.++.+++..+.+++ ..+.+|++.|...=++ .+.+.+++.|..+|-+
T Consensus 201 ~~~~~~~~~~e~~~~L~~~l~el~~~~~~~~~~~RIl~tG~~~~~~~~k~~~~iE~~G~~VV~d 264 (380)
T TIGR02263 201 LRAGLVIPVEEHNQMLADYLAAARKQEAPIKDNCRVIICGMFCEQPPLNLIKSIELSGCYIVDD 264 (380)
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHhccccCCCCCEEEEECcCCCCchHHHHHHHHHCCCEEEEe
Confidence 4467899999998877664431 1235899999776666 7889999999998853
No 243
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=20.49 E-value=1.8e+02 Score=25.88 Aligned_cols=63 Identities=24% Similarity=0.230 Sum_probs=35.6
Q ss_pred HHHHHHhcC--CcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccCee-EEEcChhhHHhh-hhhh
Q 026546 111 EMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKY-IIVKNMKEAEYV-CDYI 184 (237)
Q Consensus 111 v~~~l~~~g--~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~~~-~vv~~~~e~~~~-~~~~ 184 (237)
..+.|++.| +-|.|||=+--.+=+...+...+.|.+++++- +.|++. +|-.|+.+.... .||.
T Consensus 87 l~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIE-----------sic~D~~ii~~NI~~~~~~spDY~ 153 (222)
T PF01591_consen 87 LIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIE-----------SICDDPEIIERNIREKKQNSPDYK 153 (222)
T ss_dssp HHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEE-----------EE---HHHHHHHHHHHHTTSGGGT
T ss_pred HHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEE-----------EEeCCHHHHHHHHHHHHcCCcccc
Confidence 344555333 55688887777777777788888888888875 445433 444666666555 5565
No 244
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=20.47 E-value=5.4e+02 Score=21.89 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=46.7
Q ss_pred eEEecccccCHH----HHHHHHhcCcEEecCCccc-----cccccc-cCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcC
Q 026546 58 IWITNEIIHNPT----VNKRLEEMAVQNIPVEEGK-----KQFDVV-NKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (237)
Q Consensus 58 vy~lgeiIHN~~----Vv~~L~~~Gv~~v~~~~~~-----~~~~~v-~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTC 127 (237)
.++-||-.-+|. +++.++++|+.+.=..++. +.+.++ ...+.|.|+-.|.+++.++++....
T Consensus 70 ~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~~d~v~isl~~~~~~~~~~~~g~~-------- 141 (235)
T TIGR02493 70 TFSGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEYTDLVLLDIKHFNPEKYKKLTGVS-------- 141 (235)
T ss_pred EEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHCCC--------
Confidence 344455555554 4566677897543223331 112222 2246788999999999998775321
Q ss_pred hhhHHHHHHHHHHhhCCCe
Q 026546 128 PWVSKVWTSVEKHKKGDYT 146 (237)
Q Consensus 128 P~V~kv~~~v~~~~~~Gy~ 146 (237)
..++.+.++.+.+.|..
T Consensus 142 --~~~v~~~i~~l~~~g~~ 158 (235)
T TIGR02493 142 --LQPTLDFAKYLAKRNKP 158 (235)
T ss_pred --cHHHHHHHHHHHhCCCc
Confidence 25666777777776654
No 245
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=20.39 E-value=1.8e+02 Score=27.40 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=55.7
Q ss_pred CHHHHHHHHhcCCc----EEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhHHh
Q 026546 108 AVEEMVTLNNKNVQ----IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY 179 (237)
Q Consensus 108 ~~~v~~~l~~~g~~----ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~~~ 179 (237)
..++.+.|++|--. .-|+-|.=-++=|+.++.++++---+|++|.++---+.=+.--| ..++.+++++|++.
T Consensus 173 t~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~~ 252 (294)
T COG0761 173 TAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEIDP 252 (294)
T ss_pred HHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCCH
Confidence 35677888887663 37888998899999999999999999999998865444333222 45789999999863
No 246
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=20.28 E-value=74 Score=30.48 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=22.5
Q ss_pred ceEEecccccCHHHHHHHHhcCcE
Q 026546 57 KIWITNEIIHNPTVNKRLEEMAVQ 80 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L~~~Gv~ 80 (237)
.-|+-||-+||-.|++.|+..||.
T Consensus 376 eyYmCGPp~mNasvikmL~dlGVE 399 (410)
T COG2871 376 EYYMCGPPLMNASVIKMLKDLGVE 399 (410)
T ss_pred eEEeeCcchhhHHHHHHHHhcCcc
Confidence 589999999999999999999984
No 247
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=20.22 E-value=4.4e+02 Score=23.26 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHHhh-CCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 026546 37 WGVERAVQIAYEARKQ-FPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (237)
Q Consensus 37 ~GV~RAv~~a~~a~~~-~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l 115 (237)
+||-.+++.+.+.... ..+.+|.+.|-=-=-..+.+.|.++|++++- +. +.+..++--.|++++...++
T Consensus 12 ~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~-------v~---D~~g~~~~~~Gld~~~l~~~ 81 (227)
T cd01076 12 RGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVA-------VS---DSDGTIYNPDGLDVPALLAY 81 (227)
T ss_pred HHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------EE---CCCCeEECCCCCCHHHHHHH
Confidence 6777777777665532 2245677766322235677888899999884 22 22346788899998888877
Q ss_pred HhcCCc
Q 026546 116 NNKNVQ 121 (237)
Q Consensus 116 ~~~g~~ 121 (237)
++++-.
T Consensus 82 ~~~~g~ 87 (227)
T cd01076 82 KKEHGS 87 (227)
T ss_pred HHhcCC
Confidence 665433
No 248
>cd07057 BMC_CcmK Carbon dioxide concentrating mechanism (CcmK); Bacterial Micro-Compartment (BCM) domain. CcmK1-4 and CcmL proteins found in Synechocystis sp. strain PCC 6803 make up the beta carboxysome shell. These CcmK proteins have been shown to form hexameric units, while the CcmL proteins have been shown to form pentameric units. Together these proteins further assemble into the flat facets of the polyhedral carboxysome shell. The structures suggest that the central pores and the gaps between hexamers limit the transport of metabolites into and out of the the carboxysome.
Probab=20.21 E-value=1.5e+02 Score=22.70 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHhhCCCCceEEecccccCHH
Q 026546 38 GVERAVQIAYEARKQFPEEKIWITNEIIHNPT 69 (237)
Q Consensus 38 GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~ 69 (237)
-|+-|++.+.+..++.+ ..-++...+|.||+
T Consensus 49 aV~aAv~ag~~~~~~~~-~~~~v~~~VI~~p~ 79 (88)
T cd07057 49 EVKAAVEAGIEAAERVH-GGEVLSHTIIPRPH 79 (88)
T ss_pred HHHHHHHHHHHHhhccc-CCcEEEEEEeCCCC
Confidence 37888888777665421 13577888888886
No 249
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=20.15 E-value=1e+02 Score=28.56 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=38.6
Q ss_pred CcccHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHhcCcEEec
Q 026546 35 FCWGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 35 FC~GV~RAv~~a~~a~~~~~-~~~vy~lgeiI-HN~~Vv~~L~~~Gv~~v~ 83 (237)
+-||.+..+-...+++++++ ....|+.|..+ +||.+++++.+.|-.+..
T Consensus 71 ~~YG~rvG~~RiLdlL~~~gv~aTffv~g~~~e~~P~~v~~i~~~GHEIg~ 121 (297)
T TIGR03212 71 YEYGSRAGFWRLLRLFTERGIPVTVFGVAMALARNPEAVAAMKEAGWEIAS 121 (297)
T ss_pred hhhcchhCHHHHHHHHHHcCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEee
Confidence 44788888887877887764 23588888877 999999999999977653
No 250
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=20.09 E-value=6e+02 Score=22.26 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=37.2
Q ss_pred CceEEecccccCHHHH----HHHHhcCcEEecCCccc---cccccccCCCE-EEEcCCCCCHHHHHH---HHhcCCcEEe
Q 026546 56 EKIWITNEIIHNPTVN----KRLEEMAVQNIPVEEGK---KQFDVVNKGDV-VVLPAFGAAVEEMVT---LNNKNVQIVD 124 (237)
Q Consensus 56 ~~vy~lgeiIHN~~Vv----~~L~~~Gv~~v~~~~~~---~~~~~v~~g~~-VIirAHGv~~~v~~~---l~~~g~~ivD 124 (237)
++||++|.= ++-.+- .+|...|+....-.+.. .....+.++|. ++|+.-|-++++.+. ++++|++||=
T Consensus 129 ~~I~i~G~G-~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~ 207 (284)
T PRK11302 129 KKISFFGLG-ASAAVAHDAQNKFFRFNVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIA 207 (284)
T ss_pred CeEEEEEcc-hHHHHHHHHHHHHHhcCCceEecCCHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 468888853 222222 23556677655321110 01123445676 468888988887654 4455555554
Q ss_pred Cc
Q 026546 125 TT 126 (237)
Q Consensus 125 aT 126 (237)
-|
T Consensus 208 IT 209 (284)
T PRK11302 208 IT 209 (284)
T ss_pred EC
Confidence 44
No 251
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=20.07 E-value=1.5e+02 Score=30.74 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=78.8
Q ss_pred ecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHH
Q 026546 61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKH 140 (237)
Q Consensus 61 lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~ 140 (237)
+|=|--|+...+.+++-|+.|+-- +.++ |||-|--..-+..+.+.|+.+|=.+-.-+...-..++..
T Consensus 82 YGFLSENa~FA~a~~~aGlvfIGP----------~~~a---I~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A 148 (645)
T COG4770 82 YGFLSENADFAQAVEDAGLVFIGP----------SAGA---IRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIA 148 (645)
T ss_pred ccccccCHHHHHHHHHCCcEEECC----------CHHH---HHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHH
Confidence 677888999999999999999952 2233 788888878888888999999988888888888888888
Q ss_pred hhCCCeEEEEecCCCcceeeeccccCe-eEEEcChhhHHhh
Q 026546 141 KKGDYTSIIHGKYSHEETVATASFAGK-YIIVKNMKEAEYV 180 (237)
Q Consensus 141 ~~~Gy~ivIiG~~~HpEv~g~~g~a~~-~~vv~~~~e~~~~ 180 (237)
.+=||.|.| ++-.|=.++ --++.+++|+...
T Consensus 149 ~eiGyPVlI---------KAsaGGGGKGMRvv~~~~e~~e~ 180 (645)
T COG4770 149 EEIGYPVLI---------KASAGGGGKGMRVVETPEEFAEA 180 (645)
T ss_pred HhcCCcEEE---------EeccCCCCCceEeecCHHHHHHH
Confidence 888999987 445554454 3688999987654
No 252
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.06 E-value=1.3e+02 Score=31.48 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=36.5
Q ss_pred CCEEEEcCCCCC-----HHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhC
Q 026546 97 GDVVVLPAFGAA-----VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (237)
Q Consensus 97 g~~VIirAHGv~-----~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~ 143 (237)
|..+.=||||.| ++.+++|+.+|+.|||..--+-+.+-..+++++.+
T Consensus 450 G~~t~ePaFGl~a~WI~~~~ke~A~~~GYtVvd~~sVi~THl~evir~~a~e 501 (696)
T COG1298 450 GEETKDPAFGLPAYWIEEDQKEEAQILGYTVVDPSSVIATHLSEVIRNHAHE 501 (696)
T ss_pred CccccCCCCCCceeecCchhhhHHHhcCCeeecchHHHHHhHHHHHHHhHHH
Confidence 566677888865 78899999999999999877766666666665544
No 253
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=20.01 E-value=3.3e+02 Score=23.36 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=37.9
Q ss_pred CCCCCHHHH-HHHHhcCCcE--EeCcCh---hhHHHHHHHHHHhhCCCeEEEEecCC
Q 026546 104 AFGAAVEEM-VTLNNKNVQI--VDTTCP---WVSKVWTSVEKHKKGDYTSIIHGKYS 154 (237)
Q Consensus 104 AHGv~~~v~-~~l~~~g~~i--vDaTCP---~V~kv~~~v~~~~~~Gy~ivIiG~~~ 154 (237)
.|+++.+.. ..++..|+.. +|..|. +++...+..+++.++|++.|+.|+-.
T Consensus 42 ~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~vv~G~i~ 98 (194)
T cd01994 42 YHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDAVVFGAIL 98 (194)
T ss_pred ccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 577776654 4556688764 676664 67778888888888899999999754
Done!