Query 026546
Match_columns 237
No_of_seqs 184 out of 944
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3szu_A ISPH, 4-hydroxy-3-methy 100.0 5.1E-65 1.7E-69 468.0 18.7 177 21-236 9-189 (328)
2 3dnf_A ISPH, LYTB, 4-hydroxy-3 100.0 1.3E-64 4.4E-69 460.2 17.7 170 25-236 2-175 (297)
3 3dnf_A ISPH, LYTB, 4-hydroxy-3 88.1 3.5 0.00012 37.3 10.3 138 36-179 96-249 (297)
4 2xdq_A Light-independent proto 83.7 17 0.00059 33.5 13.0 104 24-130 128-275 (460)
5 3szu_A ISPH, 4-hydroxy-3-methy 82.7 7.2 0.00024 35.7 9.7 138 36-179 108-265 (328)
6 2k1g_A Lipoprotein SPR; soluti 82.6 1.6 5.5E-05 34.8 4.8 76 1-104 1-78 (135)
7 3d8t_A Uroporphyrinogen-III sy 79.1 29 0.001 29.6 13.0 139 6-149 44-213 (286)
8 3aek_A Light-independent proto 77.9 21 0.00071 33.0 11.4 103 24-129 148-260 (437)
9 2p9j_A Hypothetical protein AQ 75.2 13 0.00044 28.2 7.8 114 67-203 41-156 (162)
10 3o3m_B Beta subunit 2-hydroxya 75.2 1.9 6.4E-05 39.5 3.4 53 32-84 198-258 (385)
11 3jx9_A Putative phosphoheptose 73.1 11 0.00039 30.9 7.4 90 39-159 24-119 (170)
12 1s3l_A Hypothetical protein MJ 71.5 19 0.00064 29.1 8.4 61 19-84 19-83 (190)
13 1wcw_A Uroporphyrinogen III sy 69.9 46 0.0016 27.6 12.1 139 6-150 19-189 (261)
14 3mw8_A Uroporphyrinogen-III sy 65.5 20 0.00069 29.6 7.5 119 5-128 12-157 (240)
15 2cc0_A Acetyl-xylan esterase; 65.5 45 0.0015 26.7 9.5 95 39-153 77-185 (195)
16 3p9z_A Uroporphyrinogen III co 63.5 15 0.0005 30.6 6.2 89 55-150 67-167 (229)
17 3hcn_A Ferrochelatase, mitocho 61.0 54 0.0018 29.9 10.0 114 6-142 106-225 (359)
18 3ff4_A Uncharacterized protein 60.9 14 0.00049 28.4 5.3 31 100-131 86-116 (122)
19 3obb_A Probable 3-hydroxyisobu 59.2 68 0.0023 27.9 10.1 93 44-147 17-118 (300)
20 1k1e_A Deoxy-D-mannose-octulos 58.9 45 0.0015 25.9 8.1 101 66-187 39-141 (180)
21 2y8u_A Chitin deacetylase; hyd 58.2 58 0.002 27.2 9.1 27 58-84 126-152 (230)
22 2h1v_A Ferrochelatase; rossman 57.8 14 0.00047 32.8 5.3 70 36-111 119-189 (310)
23 1ny1_A Probable polysaccharide 57.4 58 0.002 27.2 9.0 27 58-84 138-164 (240)
24 2j13_A Polysaccharide deacetyl 56.8 66 0.0023 27.1 9.3 20 64-83 156-175 (247)
25 2qv5_A AGR_C_5032P, uncharacte 56.0 18 0.00062 31.7 5.7 103 40-163 110-228 (261)
26 3trj_A Phosphoheptose isomeras 55.9 67 0.0023 26.0 8.9 22 94-115 112-134 (201)
27 4es6_A Uroporphyrinogen-III sy 55.8 21 0.00071 29.8 5.9 115 6-125 18-162 (254)
28 3mmz_A Putative HAD family hyd 55.4 46 0.0016 25.9 7.6 111 70-203 47-158 (176)
29 2jyx_A Lipoprotein SPR; soluti 54.9 14 0.00047 28.8 4.3 76 1-104 1-78 (136)
30 4gbj_A 6-phosphogluconate dehy 54.3 37 0.0013 29.5 7.5 93 45-148 20-119 (297)
31 3cl6_A PUUE allantoinase; URIC 52.7 65 0.0022 27.9 8.8 84 36-119 76-180 (308)
32 3f4w_A Putative hexulose 6 pho 52.0 89 0.003 24.9 9.6 40 109-150 93-133 (211)
33 1lbq_A Ferrochelatase; rossman 50.8 57 0.0019 29.7 8.3 67 58-140 162-228 (362)
34 3re1_A Uroporphyrinogen-III sy 50.8 52 0.0018 27.8 7.7 115 6-125 26-170 (269)
35 3etn_A Putative phosphosugar i 50.6 71 0.0024 26.2 8.3 93 39-133 44-149 (220)
36 3e8m_A Acylneuraminate cytidyl 50.0 47 0.0016 25.0 6.7 112 69-203 38-151 (164)
37 3eag_A UDP-N-acetylmuramate:L- 49.9 54 0.0018 28.6 7.8 63 56-124 29-95 (326)
38 2vhw_A Alanine dehydrogenase; 49.5 1E+02 0.0036 27.5 9.9 43 90-132 81-132 (377)
39 1jr2_A Uroporphyrinogen-III sy 48.3 21 0.00073 30.4 4.8 114 7-125 38-186 (286)
40 2k6g_A Replication factor C su 47.0 68 0.0023 24.2 7.0 63 54-125 34-98 (109)
41 1vb5_A Translation initiation 45.7 27 0.00094 30.4 5.2 59 95-154 108-170 (276)
42 4hv4_A UDP-N-acetylmuramate--L 44.6 39 0.0013 31.5 6.4 61 56-123 47-109 (494)
43 3gnh_A L-lysine, L-arginine ca 40.6 1.7E+02 0.0059 24.9 9.6 90 34-123 161-266 (403)
44 2xvy_A Chelatase, putative; me 40.3 97 0.0033 26.0 7.8 45 57-109 114-158 (269)
45 3tqv_A Nicotinate-nucleotide p 38.5 93 0.0032 27.6 7.6 95 24-125 170-269 (287)
46 1bax_A M-PMV MA, M-PMV matrix 38.5 7.8 0.00027 29.4 0.4 31 110-140 14-62 (94)
47 2kkn_A Uncharacterized protein 38.2 1.3E+02 0.0045 23.7 7.9 113 23-159 21-143 (178)
48 2ebu_A Replication factor C su 37.7 1.1E+02 0.0039 23.2 7.0 62 55-125 25-88 (112)
49 2xwp_A Sirohydrochlorin cobalt 35.8 2E+02 0.0068 24.2 9.2 44 57-109 106-149 (264)
50 2vyo_A ECU11_0510, chitooligos 35.1 1.2E+02 0.004 25.6 7.4 102 41-152 105-214 (254)
51 2bfw_A GLGA glycogen synthase; 34.4 1.5E+02 0.0051 22.4 8.4 96 26-123 38-143 (200)
52 3mn1_A Probable YRBI family ph 33.6 1.7E+02 0.0058 22.8 9.0 97 70-187 54-152 (189)
53 3iek_A Ribonuclease TTHA0252; 33.4 32 0.0011 31.4 3.8 90 8-107 203-315 (431)
54 3fwz_A Inner membrane protein 32.7 1E+02 0.0035 22.9 6.1 69 97-173 8-79 (140)
55 1fy2_A Aspartyl dipeptidase; s 32.4 86 0.0029 26.1 6.1 52 68-120 51-102 (229)
56 3hn7_A UDP-N-acetylmuramate-L- 32.1 1.2E+02 0.0039 28.5 7.5 92 19-123 14-108 (524)
57 3qbu_A Putative uncharacterize 31.7 1.2E+02 0.004 26.5 7.1 90 38-128 71-183 (326)
58 4dll_A 2-hydroxy-3-oxopropiona 31.4 1.3E+02 0.0045 25.8 7.3 81 56-146 55-144 (320)
59 3n1u_A Hydrolase, HAD superfam 31.1 1.9E+02 0.0065 22.7 7.7 78 107-186 72-151 (191)
60 2a22_A Vacuolar protein sortin 30.9 1.4E+02 0.0048 24.0 7.0 28 56-84 57-86 (215)
61 3pdu_A 3-hydroxyisobutyrate de 30.6 1.4E+02 0.0048 25.0 7.2 80 57-146 26-115 (287)
62 2q7d_A Inositol-tetrakisphosph 30.3 44 0.0015 29.9 4.1 57 68-125 36-107 (346)
63 1mio_A Nitrogenase molybdenum 30.0 81 0.0028 30.1 6.1 110 53-176 333-466 (533)
64 1t57_A Conserved protein MTH16 29.5 71 0.0024 27.3 5.0 23 107-129 93-115 (206)
65 1y81_A Conserved hypothetical 29.2 52 0.0018 25.3 3.9 29 105-133 102-130 (138)
66 2nly_A BH1492 protein, diverge 29.1 1.1E+02 0.0038 26.3 6.3 101 44-165 87-208 (245)
67 2xz9_A Phosphoenolpyruvate-pro 29.0 70 0.0024 28.6 5.2 48 35-83 228-275 (324)
68 3ij5_A 3-deoxy-D-manno-octulos 28.8 1.9E+02 0.0064 23.5 7.5 112 70-204 84-197 (211)
69 3bio_A Oxidoreductase, GFO/IDH 28.5 59 0.002 28.1 4.5 70 91-161 60-133 (304)
70 3fpn_A Geobacillus stearotherm 28.3 48 0.0017 25.6 3.5 39 44-82 8-51 (119)
71 3iix_A Biotin synthetase, puta 28.2 2.8E+02 0.0095 23.6 11.2 40 100-148 156-195 (348)
72 1mio_A Nitrogenase molybdenum 27.8 1.9E+02 0.0065 27.5 8.2 105 24-129 165-286 (533)
73 3can_A Pyruvate-formate lyase- 27.7 1.3E+02 0.0044 23.3 6.0 41 97-147 55-95 (182)
74 3zq4_A Ribonuclease J 1, RNAse 27.3 1.9E+02 0.0065 27.4 8.1 47 26-79 225-271 (555)
75 3m1y_A Phosphoserine phosphata 27.2 1.5E+02 0.0052 22.4 6.3 59 127-187 141-199 (217)
76 2h78_A Hibadh, 3-hydroxyisobut 26.9 1.9E+02 0.0066 24.1 7.4 80 57-146 28-117 (302)
77 1whz_A Hypothetical protein; a 26.6 1.3E+02 0.0045 20.2 5.2 53 68-121 8-63 (70)
78 3dfz_A SIRC, precorrin-2 dehyd 26.1 2.9E+02 0.0099 23.1 8.6 104 5-123 12-119 (223)
79 3myd_A Flagellar biosynthesis 25.5 40 0.0014 31.0 2.9 47 97-143 119-170 (365)
80 2cc0_A Acetyl-xylan esterase; 25.0 2.6E+02 0.0087 22.1 7.9 112 34-150 14-155 (195)
81 2gek_A Phosphatidylinositol ma 24.6 3.1E+02 0.011 22.9 9.3 103 25-129 209-317 (406)
82 4dpk_A Malonyl-COA/succinyl-CO 24.5 84 0.0029 28.4 4.9 33 97-129 80-113 (359)
83 4dpl_A Malonyl-COA/succinyl-CO 24.5 84 0.0029 28.4 4.9 33 97-129 80-113 (359)
84 2xbl_A Phosphoheptose isomeras 24.5 88 0.003 24.4 4.5 22 94-115 114-136 (198)
85 3u7q_B Nitrogenase molybdenum- 24.5 1.9E+02 0.0066 27.3 7.6 103 26-129 180-320 (523)
86 2qmm_A UPF0217 protein AF_1056 24.2 2E+02 0.0067 24.1 6.8 87 34-123 76-172 (197)
87 1b4b_A Arginine repressor; cor 23.9 74 0.0025 22.1 3.5 31 154-184 36-67 (71)
88 3gnn_A Nicotinate-nucleotide p 23.8 2.6E+02 0.0089 24.9 7.9 95 25-126 182-281 (298)
89 4dfc_B Uvrabc system protein A 23.8 42 0.0014 26.2 2.4 38 45-82 11-53 (126)
90 1eej_A Thiol:disulfide interch 23.7 43 0.0015 27.2 2.6 37 122-158 93-132 (216)
91 1l7b_A DNA ligase; BRCT, autos 23.3 1E+02 0.0034 22.5 4.3 61 55-125 10-71 (92)
92 4em8_A Ribose 5-phosphate isom 22.8 55 0.0019 26.5 2.9 43 109-151 23-72 (148)
93 1tk9_A Phosphoheptose isomeras 22.8 82 0.0028 24.4 4.0 35 94-128 108-146 (188)
94 3g0o_A 3-hydroxyisobutyrate de 22.6 3.2E+02 0.011 23.0 8.1 89 45-145 22-121 (303)
95 1yac_A Ycacgp, YCAC gene produ 22.4 2E+02 0.0068 23.4 6.4 57 97-154 78-140 (208)
96 1x92_A APC5045, phosphoheptose 22.3 1.3E+02 0.0045 23.6 5.2 39 94-132 111-153 (199)
97 1tv8_A MOAA, molybdenum cofact 22.1 3.2E+02 0.011 23.3 8.0 42 98-147 121-162 (340)
98 4b4k_A N5-carboxyaminoimidazol 22.1 1.3E+02 0.0046 25.1 5.2 50 64-151 35-84 (181)
99 1v58_A Thiol:disulfide interch 22.0 70 0.0024 26.5 3.6 27 123-149 105-132 (241)
100 3hh1_A Tetrapyrrole methylase 21.9 1.2E+02 0.004 22.4 4.5 26 136-161 71-96 (117)
101 3tn4_A Phosphotriesterase; lac 21.9 4.3E+02 0.015 23.6 12.3 119 17-152 170-300 (360)
102 2lqk_A Transcriptional regulat 27.2 19 0.00066 25.2 0.0 18 92-109 5-22 (70)
103 3dr3_A N-acetyl-gamma-glutamyl 21.6 49 0.0017 29.8 2.6 33 97-129 76-109 (337)
104 1vpq_A Hypothetical protein TM 21.5 78 0.0027 27.6 3.9 51 58-109 154-209 (273)
105 3abi_A Putative uncharacterize 21.4 2.2E+02 0.0074 24.9 6.9 103 22-137 14-121 (365)
106 1t3b_A Thiol:disulfide interch 21.3 51 0.0018 26.7 2.6 31 123-153 94-124 (211)
107 2i5i_A UPF0249 protein EF_3048 21.3 42 0.0014 28.9 2.1 46 24-75 4-53 (263)
108 2iw0_A Chitin deacetylase; hyd 21.3 2.8E+02 0.0094 23.2 7.3 27 58-84 140-166 (254)
109 2obb_A Hypothetical protein; s 21.1 1.3E+02 0.0046 23.5 4.9 48 109-157 30-77 (142)
110 2lkc_A Translation initiation 21.0 79 0.0027 23.4 3.4 36 120-155 83-118 (178)
111 2uva_G Fatty acid synthase bet 20.9 2.4E+02 0.0083 31.6 8.3 75 57-149 638-721 (2060)
112 1nrz_A PTS system, sorbose-spe 20.8 1.8E+02 0.0063 23.4 5.8 80 36-123 59-141 (164)
113 3pef_A 6-phosphogluconate dehy 20.8 1.3E+02 0.0043 25.2 5.0 90 45-146 16-115 (287)
114 1ny1_A Probable polysaccharide 20.7 3.6E+02 0.012 22.2 9.8 117 25-145 43-194 (240)
115 3paj_A Nicotinate-nucleotide p 20.5 2E+02 0.0067 26.0 6.4 94 25-125 204-302 (320)
116 2p5m_A Arginine repressor; alp 20.5 88 0.003 22.3 3.4 32 153-184 47-79 (83)
117 1nri_A Hypothetical protein HI 20.3 86 0.003 27.2 4.0 42 94-135 138-183 (306)
118 1xfc_A Alanine racemase; alpha 20.2 2E+02 0.0068 25.4 6.4 100 58-183 15-120 (384)
119 2e5f_A Hypothetical protein PH 20.1 1.3E+02 0.0043 26.2 5.0 37 32-70 194-231 (325)
120 1jeo_A MJ1247, hypothetical pr 20.1 1.2E+02 0.004 23.4 4.4 35 94-128 80-118 (180)
No 1
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=100.00 E-value=5.1e-65 Score=467.99 Aligned_cols=177 Identities=24% Similarity=0.388 Sum_probs=163.3
Q ss_pred eecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEE
Q 026546 21 TWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVV 100 (237)
Q Consensus 21 ~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~V 100 (237)
-.|.|.|+||+++||||||+|||++|++++++++ .|||++|||||||+|+++|+++|++|+++ ++++|+|++|
T Consensus 9 ~~~~~~i~lA~~~GFC~GV~RAI~~ae~al~~~~-~~iy~~g~IVHN~~Vv~~L~~~Gv~~ve~------l~ev~~g~~V 81 (328)
T 3szu_A 9 HHGSMQILLANPRGFCAGVDRAISIVENALAIYG-APIYVRHEVVHNRYVVDSLRERGAIFIEQ------ISEVPDGAIL 81 (328)
T ss_dssp ----CEEEECSSCSCCHHHHHHHHHHHHHHHHHC-SCEEEESCSSSCHHHHHHHHHTTEEEESS------GGGSCTTCEE
T ss_pred cCCceEEEEeCCCCcCccHHHHHHHHHHHHHhcC-CCEEEeCCCccCHHHHHHHHHCCCEEecc------hhhCCCCCEE
Confidence 3588999999999999999999999999998875 58999999999999999999999999974 8999999999
Q ss_pred EEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc--C--eeEEEcChhh
Q 026546 101 VLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA--G--KYIIVKNMKE 176 (237)
Q Consensus 101 IirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a--~--~~~vv~~~~e 176 (237)
||||||+||+++++|++||+.|||||||||+|+|++|++++++||+||||||++||||+||+||+ + .+++|++++|
T Consensus 82 IirAHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~G~~~~~~g~~~vV~~~ed 161 (328)
T 3szu_A 82 IFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDD 161 (328)
T ss_dssp EECTTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHTCEEEEESCTTCHHHHHHHTTCCCTTSCEEEECSHHH
T ss_pred EEECCCCCHHHHHHHHHCCCEEEECCCcchHHHHHHHHHHHhCCCEEEEEccCCCceEEeecccccCCCCcEEEECCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 3 6899999999
Q ss_pred HHhhhhhhcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546 177 AEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI 236 (237)
Q Consensus 177 ~~~~~~~~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i 236 (237)
++.+ +..+++++++++|||||+++|++|
T Consensus 162 v~~l--------------------------------~~~~~~kv~~vsQTT~s~~~~~~i 189 (328)
T 3szu_A 162 VWKL--------------------------------TVKNEEKLSFMTQTTLSVDDTSDV 189 (328)
T ss_dssp HHHC--------------------------------CCSCTTSEEEEECTTSCHHHHHHH
T ss_pred HHhC--------------------------------CcCCCCeEEEEEecCCcHHHHHHH
Confidence 9754 235678999999999999999987
No 2
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=100.00 E-value=1.3e-64 Score=460.23 Aligned_cols=170 Identities=31% Similarity=0.532 Sum_probs=160.4
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA 104 (237)
|+|+||+++||||||+|||++|++++++++ +|||++|||||||+|+++|+++|++|+++ +++|+|++|||||
T Consensus 2 m~I~lA~~~GFC~GV~RAI~~a~~al~~~~-~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIirA 73 (297)
T 3dnf_A 2 VDIIIAEHAGFCFGVKRAVKLAEESLKESQ-GKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIRS 73 (297)
T ss_dssp CEEEECTTCSSCHHHHHHHHHHHHHTTTCC-SCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEECT
T ss_pred eEEEEeCCCCCCccHHHHHHHHHHHHHhcC-CCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEEC
Confidence 899999999999999999999999999875 69999999999999999999999999973 7788899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhHHhh
Q 026546 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYV 180 (237)
Q Consensus 105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~~~~ 180 (237)
||+||+++++|++||+.|||||||||+|+|++|++++++||+|||||+++||||+||+||+ +++++|++++|++.+
T Consensus 74 HGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~l 153 (297)
T 3dnf_A 74 HGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGEA 153 (297)
T ss_dssp TCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGGG
T ss_pred CCCCHHHHHHHHHCCCEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999 468999999999654
Q ss_pred hhhhcCCccCCCCchHHHHHHHHHhhhcCCCCCCCCCcceEEEecccCChhhhhhc
Q 026546 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI 236 (237)
Q Consensus 181 ~~~~~~~q~~~~~~~~~~f~~~f~~~~s~gfdp~~~l~~v~v~nQTTm~~~et~~i 236 (237)
.+++++++++|||||+++|++|
T Consensus 154 ----------------------------------~~~~kv~~vsQTT~s~~~~~~i 175 (297)
T 3dnf_A 154 ----------------------------------LKHERVGIVAQTTQNEEFFKEV 175 (297)
T ss_dssp ----------------------------------GGCSEEEEEECTTCCHHHHHHH
T ss_pred ----------------------------------CCCCcEEEEEecCCcHHHHHHH
Confidence 1346999999999999999987
No 3
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=88.09 E-value=3.5 Score=37.26 Aligned_cols=138 Identities=17% Similarity=0.081 Sum_probs=99.0
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHh-----cCcEEecCCccccccccccCCC-EEEEcCCCCCH
Q 026546 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE-----MAVQNIPVEEGKKQFDVVNKGD-VVVLPAFGAAV 109 (237)
Q Consensus 36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~-----~Gv~~v~~~~~~~~~~~v~~g~-~VIirAHGv~~ 109 (237)
|.=|.++=..+.+..++ +..|.+.|.==| |+|..-+-. -++.++++.+ +++.++..+ ..+++-=-.+.
T Consensus 96 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~g~~~~~~~~~~vV~~~e---d~~~l~~~~kv~~vsQTT~s~ 169 (297)
T 3dnf_A 96 CPYVKAVHEAVCQLTRE--GYFVVLVGEKNH-PEVIGTLGYLRACNGKGIVVETLE---DIGEALKHERVGIVAQTTQNE 169 (297)
T ss_dssp CHHHHHHHHHHHHHHHT--TCEEEEESCTTC-HHHHHHHHHHHHTTCCEEEESSGG---GGGGGGGCSEEEEEECTTCCH
T ss_pred CcchHHHHHHHHHHHhC--CCEEEEEecCCC-ceEEeeccccccCCCcEEEEcCHH---HHHhcCCCCcEEEEEecCCcH
Confidence 67777777777777665 357999999777 888776633 2566776543 344444434 34555444443
Q ss_pred ----HHHHHHHhc--CCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChhhHHh
Q 026546 110 ----EEMVTLNNK--NVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY 179 (237)
Q Consensus 110 ----~v~~~l~~~--g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~e~~~ 179 (237)
++.+.|++| .+.+.|+-|.-...=|..+++++++-.-+|++|.++-.-+.=+..-| .+++.|++.+|++.
T Consensus 170 ~~~~~iv~~L~~r~p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 249 (297)
T 3dnf_A 170 EFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP 249 (297)
T ss_dssp HHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG
T ss_pred HHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH
Confidence 456677776 45579999999999999999999999999999998877665554333 45789999999853
No 4
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=83.69 E-value=17 Score=33.46 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=61.5
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhC-------------------------------------CCCceEEeccccc
Q 026546 24 NVKVKLAESYGFCWGVERAVQIAYEARKQF-------------------------------------PEEKIWITNEIIH 66 (237)
Q Consensus 24 ~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~-------------------------------------~~~~vy~lgeiIH 66 (237)
+..|+.+..-||..+...+.+.|.+++-+. ..+.|-++|++
T Consensus 128 ~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnilG~~-- 205 (460)
T 2xdq_A 128 GIPIVVARANGLDYAFTQGEDTVLAAMAARCPTSTAISDPEERNPIQRLLNFGKKKEEVQAQSSQYHPHPPLVLFGSL-- 205 (460)
T ss_dssp SSCEEEEECCTTTCCTTHHHHHHHHHHHTTCCCCC-----------------------------CCCSCCCEEEESCC--
T ss_pred CCcEEEEecCCccccHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccCCCCcEEEEEec--
Confidence 367888888899855555555554433211 11268899986
Q ss_pred CHHH----HHHHHhcCcEEecCC--ccccccccccCCCEEEEcCCCCCHHHHHHH-HhcCCcEEeCcChhh
Q 026546 67 NPTV----NKRLEEMAVQNIPVE--EGKKQFDVVNKGDVVVLPAFGAAVEEMVTL-NNKNVQIVDTTCPWV 130 (237)
Q Consensus 67 N~~V----v~~L~~~Gv~~v~~~--~~~~~~~~v~~g~~VIirAHGv~~~v~~~l-~~~g~~ivDaTCP~V 130 (237)
|+.. ..-|+++|+.++.-. ...+++..++.....+.-.+-.. ..-+.| ++.|...+....|+-
T Consensus 206 ~~~~~~ei~~lL~~~Gi~v~~~~~~~~~~el~~~~~A~~ni~~~~~~~-~~A~~Le~~~giP~~~~~~P~G 275 (460)
T 2xdq_A 206 PDPVVTQLTLELKKQGIKVSGWLPAKRYTELPVIDEGYYVAGVNPFLS-RTATTLIRRRKCQLITAPFPIG 275 (460)
T ss_dssp CHHHHHHHHHHHGGGTCCEEEEESCSSGGGCCCCCTTCEEEESSTTCH-HHHHHHHHTTCCEEECCCCSBH
T ss_pred CccHHHHHHHHHHHcCCeEEEEeCCCCHHHHHccccCcEEEEcCHhHH-HHHHHHHHHcCCCceecCcCcc
Confidence 7764 556788999876411 11233444444444443333333 555556 567889988888874
No 5
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=82.68 E-value=7.2 Score=35.68 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=97.8
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc-----CcEEecCCccccccccccC---CCEEEEcCCCC
Q 026546 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNK---GDVVVLPAFGA 107 (237)
Q Consensus 36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~~v~~---g~~VIirAHGv 107 (237)
|.=|.++-..+.+..++ +..|.+.|.==| |+|..-+-.- ++.++++.+ +++.++. ....+++-==.
T Consensus 108 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~G~~~~~~g~~~vV~~~e---dv~~l~~~~~~kv~~vsQTT~ 181 (328)
T 3szu_A 108 CPLVTKVHMEVARASRR--GEESILIGHAGH-PQVEGTMGQYSNPEGGMYLVESPD---DVWKLTVKNEEKLSFMTQTTL 181 (328)
T ss_dssp CHHHHHHHHHHHHHHHH--TCEEEEESCTTC-HHHHHHHTTCCCTTSCEEEECSHH---HHHHCCCSCTTSEEEEECTTS
T ss_pred CcchHHHHHHHHHHHhC--CCEEEEEccCCC-ceEEeecccccCCCCcEEEECCHH---HHHhCCcCCCCeEEEEEecCC
Confidence 66677777777776665 357999999777 8887766433 466676543 2333332 34555554444
Q ss_pred C----HHHHHHHHhcCCcE----EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc----CeeEEEcChh
Q 026546 108 A----VEEMVTLNNKNVQI----VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMK 175 (237)
Q Consensus 108 ~----~~v~~~l~~~g~~i----vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a----~~~~vv~~~~ 175 (237)
+ .++.+.|+++.-.+ .|+-|.-...=|..+++++++---+|++|.++-.-+.=+..-| .+++.|++.+
T Consensus 182 s~~~~~~iv~~L~~r~p~i~~~~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~ 261 (328)
T 3szu_A 182 SVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAK 261 (328)
T ss_dssp CHHHHHHHHHHHHHHCTTCBCCSSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGG
T ss_pred cHHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChH
Confidence 4 35667788876655 4999999999999999999999999999998877666554333 3578999999
Q ss_pred hHHh
Q 026546 176 EAEY 179 (237)
Q Consensus 176 e~~~ 179 (237)
|++.
T Consensus 262 el~~ 265 (328)
T 3szu_A 262 DIQE 265 (328)
T ss_dssp GCCH
T ss_pred HCCH
Confidence 9854
No 6
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=82.58 E-value=1.6 Score=34.76 Aligned_cols=76 Identities=24% Similarity=0.453 Sum_probs=50.6
Q ss_pred CCcccchhHHHHHHHc-CCcceecceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcC
Q 026546 1 MNQEYTSDIIKKLKEN-GFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (237)
Q Consensus 1 ~~~~~~s~~i~~~~~~-~~~~~~g~m~I~lA~~~GF-C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~G 78 (237)
|+.+-++.|++..++. |.++.||+. .+.|| |.|--+ .+++.. ++ |--|..-....+.|
T Consensus 1 mn~~~~~~ii~~a~~~lG~PY~wGG~-----~~~G~DCSGlv~---~vy~~~--~G----------i~lPr~s~~q~~~g 60 (135)
T 2k1g_A 1 MNVDVKSRIMDQYADWKGVRYRLGGS-----TKKGIDCSGFVQ---RTFREQ--FG----------LELPRSTYEQQEMG 60 (135)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCCSSCC-----BTTBCCHHHHHH---HHHHHT--TC----------CCCCSSHHHHGGGS
T ss_pred CCHhHHHHHHHHHHHHCCCCccCCCc-----CCCCceeHHHHH---HHHHHc--CC----------CCCCCCHHHHhhCC
Confidence 6677889999988874 899999974 47899 999754 334321 21 22244445555666
Q ss_pred cEEecCCccccccccccCCCEEEEcC
Q 026546 79 VQNIPVEEGKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 79 v~~v~~~~~~~~~~~v~~g~~VIirA 104 (237)
-. |+ .+++.+||.|.|+.
T Consensus 61 ~~-V~-------~~~l~pGDLvFf~~ 78 (135)
T 2k1g_A 61 KS-VS-------RSNLRTGDLVLFRA 78 (135)
T ss_dssp EE-EC-------GGGCCTTEEEEEEE
T ss_pred cE-ec-------HHHccCCcEEEECC
Confidence 44 32 46788899998874
No 7
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=79.06 E-value=29 Score=29.59 Aligned_cols=139 Identities=11% Similarity=0.029 Sum_probs=77.9
Q ss_pred chhHHHHHHHcCCcceecc-eEEEEeC--------------CCCCcccHHHHHHHHHHHHhhC--------CCCceEEec
Q 026546 6 TSDIIKKLKENGFEYTWGN-VKVKLAE--------------SYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (237)
Q Consensus 6 ~s~~i~~~~~~~~~~~~g~-m~I~lA~--------------~~GFC~GV~RAv~~a~~a~~~~--------~~~~vy~lg 62 (237)
.+++.+.+++.|.....-+ +++.-.. .-...|==.+||+...+.+.+. .+.++|+.|
T Consensus 44 ~~~l~~~L~~~G~~v~~~P~i~i~~~~~~~l~~~l~~l~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG 123 (286)
T 3d8t_A 44 KEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 123 (286)
T ss_dssp HHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCeEEEeeeEEEecCCHHHHHHHHHhhccCCCEEEEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEEC
Confidence 5788999999986554433 3333211 1122222345555544433221 124789888
Q ss_pred ccccCHHHHHHHHhcCcE--EecCCccccccccccCCC--EEEEcCCCCCHHHHHHHHhcCCcEEeCcC----hhhHHHH
Q 026546 63 EIIHNPTVNKRLEEMAVQ--NIPVEEGKKQFDVVNKGD--VVVLPAFGAAVEEMVTLNNKNVQIVDTTC----PWVSKVW 134 (237)
Q Consensus 63 eiIHN~~Vv~~L~~~Gv~--~v~~~~~~~~~~~v~~g~--~VIirAHGv~~~v~~~l~~~g~~ivDaTC----P~V~kv~ 134 (237)
|..-+.|++.|+. ++.+.+...-++.+.+|. ++++|+-+..+...+.|+++|+.+....| |.-....
T Consensus 124 -----~~Ta~aL~~~G~~~~~~p~~~~e~L~~~l~~g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~ 198 (286)
T 3d8t_A 124 -----AKAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGIL 198 (286)
T ss_dssp -----HHHHHHHHHTTCCCSEECSSSGGGGGGGCCCCCSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHH
T ss_pred -----HHHHHHHHHcCCCccccccccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHH
Confidence 4556899999986 343111111233344455 45678888889999999999999865554 4322233
Q ss_pred HHHHHHhhCCCeEEE
Q 026546 135 TSVEKHKKGDYTSII 149 (237)
Q Consensus 135 ~~v~~~~~~Gy~ivI 149 (237)
...+.+....+..|+
T Consensus 199 ~~~~~l~~~~~d~v~ 213 (286)
T 3d8t_A 199 RLEEAVLRGEVDALA 213 (286)
T ss_dssp HHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCCEEE
Confidence 333444444444444
No 8
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=77.88 E-value=21 Score=32.97 Aligned_cols=103 Identities=11% Similarity=0.150 Sum_probs=61.7
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhh-C---CCCceEEecccccC--HHHHHHHHhcCcEEecCCccccccccccC-
Q 026546 24 NVKVKLAESYGFCWGVERAVQIAYEARKQ-F---PEEKIWITNEIIHN--PTVNKRLEEMAVQNIPVEEGKKQFDVVNK- 96 (237)
Q Consensus 24 ~m~I~lA~~~GFC~GV~RAv~~a~~a~~~-~---~~~~vy~lgeiIHN--~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~- 96 (237)
+..|+-+..-||----....+.|.+++-+ . +...|-++|++--+ .++..-|+++|+.++.-..+. .++++..
T Consensus 148 ~~pVi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~~~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~ 226 (437)
T 3aek_A 148 HVRVYSYTGSGLDTTFTQGEDTCLAAMVPTLDTTEAAELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAV 226 (437)
T ss_dssp TCEEEEEECCTTTCCTTHHHHHHHHHHGGGSCBCCCCCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCB
T ss_pred CCeEEEeECCCCCCcHHHHHHHHHHHHHHHhcccCCCcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhh
Confidence 46788888888864234444444443322 1 23579999996333 245566788999866432222 4555543
Q ss_pred --CC-EEEEcCCCCCHHHHHHHHhcCCcEEeCcChh
Q 026546 97 --GD-VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 97 --g~-~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
.. .+++...+ ...-+.|++.|...+..+.|+
T Consensus 227 ~~A~~niv~~~~~--~~~A~~Le~~GiP~i~~~~P~ 260 (437)
T 3aek_A 227 GPNTRFILAQPFL--GETTGALERRGAKRIAAPFPF 260 (437)
T ss_dssp CTTCEEEESSTTC--HHHHHHHHHTTCEECCCCCSC
T ss_pred hcCcEEEEECccH--HHHHHHHHHcCCCeEecCCCc
Confidence 32 34555444 444555588899999988876
No 9
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=75.19 E-value=13 Score=28.15 Aligned_cols=114 Identities=17% Similarity=0.073 Sum_probs=68.7
Q ss_pred CHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCC
Q 026546 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDY 145 (237)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~-ivDaTCP~V~kv~~~v~~~~~~Gy 145 (237)
+.+.++.|+++|+.+. |++ -+-.......++..|+. ++|...|...-+....+++.-...
T Consensus 41 ~~~~l~~l~~~g~~~~------------------i~T-~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~~~~~~~~~~~~~ 101 (162)
T 2p9j_A 41 DGIGIKLLQKMGITLA------------------VIS-GRDSAPLITRLKELGVEEIYTGSYKKLEIYEKIKEKYSLKDE 101 (162)
T ss_dssp HHHHHHHHHTTTCEEE------------------EEE-SCCCHHHHHHHHHTTCCEEEECC--CHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHCCCEEE------------------EEe-CCCcHHHHHHHHHcCCHhhccCCCCCHHHHHHHHHHcCCCHH
Confidence 3477888888887644 111 11245666677777775 578888888888888887766667
Q ss_pred eEEEEecCCCcceeeeccccCeeEEE-cChhhHHhhhhhhcCCccCCCCchHHHHHHHH
Q 026546 146 TSIIHGKYSHEETVATASFAGKYIIV-KNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203 (237)
Q Consensus 146 ~ivIiG~~~HpEv~g~~g~a~~~~vv-~~~~e~~~~~~~~~~~q~~~~~~~~~~f~~~f 203 (237)
.++.+|+.. .-+.+.. .++-.+++ ...+++...++|++.+ . +..+-..++++.+
T Consensus 102 ~~~~vGD~~-~Di~~a~-~ag~~~~~~~~~~~~~~~a~~v~~~-~-~~~g~~~~~~~~~ 156 (162)
T 2p9j_A 102 EIGFIGDDV-VDIEVMK-KVGFPVAVRNAVEEVRKVAVYITQR-N-GGEGALREVAELI 156 (162)
T ss_dssp GEEEEECSG-GGHHHHH-HSSEEEECTTSCHHHHHHCSEECSS-C-SSSSHHHHHHHHH
T ss_pred HEEEECCCH-HHHHHHH-HCCCeEEecCccHHHHhhCCEEecC-C-CCCcHHHHHHHHH
Confidence 899999976 4444433 23322334 4455666678887654 1 1123344566555
No 10
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=75.19 E-value=1.9 Score=39.48 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=42.7
Q ss_pred CCCCcccHHHHHHHHHHHHh---hCC-----CCceEEecccccCHHHHHHHHhcCcEEecC
Q 026546 32 SYGFCWGVERAVQIAYEARK---QFP-----EEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (237)
Q Consensus 32 ~~GFC~GV~RAv~~a~~a~~---~~~-----~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~ 84 (237)
..+||.|.+++.+..++..+ +.+ +.+|.+.|-.+.|+.+.+.|++.|+.+|-+
T Consensus 198 ~~~~~~~~~~~~~~~~~l~~el~~~~~~~~~~~RI~~~G~~~~~~~l~~~le~~Ga~VV~~ 258 (385)
T 3o3m_B 198 KSGFFMRKEEHTELVKDLIAKLNAMPEEVCSGKKVLLTGILADSKDILDILEDNNISVVAD 258 (385)
T ss_dssp HGGGGSCHHHHHHHHHHHHHHHHHSCCCCCSSEEEEEEESCCCCHHHHHHHHHTTEEEEEE
T ss_pred HhheeCCHHHHHHHHHHHHHHHHhhhhcCCCCceEEEECCCCCcHHHHHHHHHCCCEEEEE
Confidence 35799999999998876542 211 238999999999999999999999999864
No 11
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=73.08 E-value=11 Score=30.93 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc-----CcEEecCCccccccccccCCCE-EEEcCCCCCHHHH
Q 026546 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDV-VVLPAFGAAVEEM 112 (237)
Q Consensus 39 V~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~~v~~g~~-VIirAHGv~~~v~ 112 (237)
+++|.++.-++... ++.||+.|- =|-.-+.+..-.+ |+.-+. +..++.++|+ +||+..|..+...
T Consensus 24 I~~AA~llaqai~~--~g~IyvfG~-Ghs~~~~~e~~~~~e~l~~~~~~~------~~~~i~~~D~vii~S~Sg~n~~~i 94 (170)
T 3jx9_A 24 LFDVVRLLAQALVG--QGKVYLDAY-GEFEGLYPMLSDGPDQMKRVTKIK------DHKTLHAVDRVLIFTPDTERSDLL 94 (170)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEEEC-GGGGGGTHHHHTSTTCCTTEEECC------TTCCCCTTCEEEEEESCSCCHHHH
T ss_pred HHHHHHHHHHHHhC--CCEEEEECC-CcHHHHHHHHHcccCCccchhhhh------hcCCCCCCCEEEEEeCCCCCHHHH
Confidence 46666666666654 468999883 3544444433222 222221 1236677887 4799999988776
Q ss_pred HHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCccee
Q 026546 113 VTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (237)
Q Consensus 113 ~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~ 159 (237)
+.+ .++.++|-.+|.|-...|-+..
T Consensus 95 e~A----------------------~~ake~G~~vIaITs~~~~~~~ 119 (170)
T 3jx9_A 95 ASL----------------------ARYDAWHTPYSIITLGDVTETL 119 (170)
T ss_dssp HHH----------------------HHHHHHTCCEEEEESSCCCTTG
T ss_pred HHH----------------------HHHHHCCCcEEEEeCcchhccc
Confidence 655 3455666666666654454443
No 12
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=71.54 E-value=19 Score=29.13 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=33.7
Q ss_pred cceecc-eEEE-EeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcC--cEEecC
Q 026546 19 EYTWGN-VKVK-LAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPV 84 (237)
Q Consensus 19 ~~~~g~-m~I~-lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~G--v~~v~~ 84 (237)
+..+.+ |+|. ++..-|- ..+++.+.+.++......|+.+|.|+. |.+.+.|++.+ +.+|..
T Consensus 19 ~~~~~g~m~i~~iSD~Hg~----~~~l~~~l~~~~~~~~D~ii~~GDl~~-~~~~~~l~~l~~~~~~V~G 83 (190)
T 1s3l_A 19 NLYFQGHMKIGIMSDTHDH----LPNIRKAIEIFNDENVETVIHCGDFVS-LFVIKEFENLNANIIATYG 83 (190)
T ss_dssp -------CEEEEECCCTTC----HHHHHHHHHHHHHSCCSEEEECSCCCS-THHHHHGGGCSSEEEEECC
T ss_pred ChhhcCCeEEEEEeeCCCC----HHHHHHHHHHHhhcCCCEEEECCCCCC-HHHHHHHHhcCCCEEEEeC
Confidence 445555 8875 4566553 244444444333222247999999985 68899998654 555654
No 13
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=69.87 E-value=46 Score=27.55 Aligned_cols=139 Identities=11% Similarity=0.031 Sum_probs=78.4
Q ss_pred chhHHHHHHHcCCcceecc-eEEEEe--------------CCCCCcccHHHHHHHHHHHHhhC--------CCCceEEec
Q 026546 6 TSDIIKKLKENGFEYTWGN-VKVKLA--------------ESYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (237)
Q Consensus 6 ~s~~i~~~~~~~~~~~~g~-m~I~lA--------------~~~GFC~GV~RAv~~a~~a~~~~--------~~~~vy~lg 62 (237)
.+++.+.+++.|.....-+ +++.-. ..-..-|==.+||+...+.+.+. .+.++|+.|
T Consensus 19 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG 98 (261)
T 1wcw_A 19 KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 98 (261)
T ss_dssp HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHhCchHHHHhcCCeEEEEC
Confidence 5788999999986554433 344321 11222333345555554443321 124788888
Q ss_pred ccccCHHHHHHHHhcCcE--EecCCcccc-ccccccCCC--EEEEcCCCCCHHHHHHHHhcCCcEEeCcC----hhhHHH
Q 026546 63 EIIHNPTVNKRLEEMAVQ--NIPVEEGKK-QFDVVNKGD--VVVLPAFGAAVEEMVTLNNKNVQIVDTTC----PWVSKV 133 (237)
Q Consensus 63 eiIHN~~Vv~~L~~~Gv~--~v~~~~~~~-~~~~v~~g~--~VIirAHGv~~~v~~~l~~~g~~ivDaTC----P~V~kv 133 (237)
+ .--+.|++.|+. ++. ....+ -++.+.+|. ++++|+-+-.+...+.|+++|+.+....| |.-...
T Consensus 99 ~-----~Ta~~l~~~G~~~~~~p-~~~~e~L~~~l~~g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~ 172 (261)
T 1wcw_A 99 A-----KAARALKEAGLPPHAVG-DGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGI 172 (261)
T ss_dssp H-----HHHHHHHHTTCCCSEEC-SSSHHHHGGGSCCCCEEEEEECCSSCCHHHHHHHHHTTEEEEEECSEEEEECHHHH
T ss_pred H-----HHHHHHHHcCCCCCccc-CccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEeeEEEecCCccH
Confidence 4 556889999986 343 21111 123333355 45678888889999999999998865544 433223
Q ss_pred HHHHHHHhhCCCeEEEE
Q 026546 134 WTSVEKHKKGDYTSIIH 150 (237)
Q Consensus 134 ~~~v~~~~~~Gy~ivIi 150 (237)
....+.+....+..|++
T Consensus 173 ~~~~~~l~~~~~d~v~f 189 (261)
T 1wcw_A 173 LRLEEALLRGEVDALAF 189 (261)
T ss_dssp HHHHHHHHHTCCSEEEE
T ss_pred HHHHHHHHcCCCCEEEE
Confidence 33344454444544443
No 14
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=65.52 E-value=20 Score=29.55 Aligned_cols=119 Identities=14% Similarity=0.219 Sum_probs=73.9
Q ss_pred cchhHHHHHHHcCCcceecc-eEEEE-----------eCCCCCcccHHHHHHHHHHHHh-hCCCCceEEecccccCHHHH
Q 026546 5 YTSDIIKKLKENGFEYTWGN-VKVKL-----------AESYGFCWGVERAVQIAYEARK-QFPEEKIWITNEIIHNPTVN 71 (237)
Q Consensus 5 ~~s~~i~~~~~~~~~~~~g~-m~I~l-----------A~~~GFC~GV~RAv~~a~~a~~-~~~~~~vy~lgeiIHN~~Vv 71 (237)
-.+++.+.+++.|.....-+ +++.- .+.-...|==.+||+...+.++ .+++.++|+.|+ .--
T Consensus 12 ~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~aV~~~~~~l~~~l~~~~~~aVG~-----~Ta 86 (240)
T 3mw8_A 12 KNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSAVSFATPWLKDQWPKATYYAVGD-----ATA 86 (240)
T ss_dssp SCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEEESSH-----HHH
T ss_pred HhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHHHHHHHHHHHhhCcCCeEEEECH-----HHH
Confidence 45789999999985543332 33321 1223344444666666665553 355568999885 455
Q ss_pred HHHHhcCcEE--ecCCc-ccccccc------ccCCCEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcCh
Q 026546 72 KRLEEMAVQN--IPVEE-GKKQFDV------VNKGDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCP 128 (237)
Q Consensus 72 ~~L~~~Gv~~--v~~~~-~~~~~~~------v~~g~~VIirAHGv~~~v~~~l~~~g~~i-----vDaTCP 128 (237)
+.|++.|+.. +++.. ..+.+-+ ++...++++|+-+..+...+.|+++|..| +++.+|
T Consensus 87 ~~L~~~G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~ 157 (240)
T 3mw8_A 87 DALALQGITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACP 157 (240)
T ss_dssp HHHHHTTCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECC
T ss_pred HHHHHcCCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEEEEeeCC
Confidence 8999999863 44321 2222222 22244678899988999999999999876 555554
No 15
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=65.48 E-value=45 Score=26.75 Aligned_cols=95 Identities=6% Similarity=0.040 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhC-CCCc-eEEecccccCHHHHHHHHhcCcEEecCCccccccc------------cccCCCEEEEcC
Q 026546 39 VERAVQIAYEARKQF-PEEK-IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFD------------VVNKGDVVVLPA 104 (237)
Q Consensus 39 V~RAv~~a~~a~~~~-~~~~-vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~------------~v~~g~~VIirA 104 (237)
+++=|..+.+++++. +..+ .|-.----.|+.+.+.|++.|...+...-+..|+. .+.+|++|++
T Consensus 77 ~~~ei~~~~~~l~~~~G~~~~~fr~P~G~~~~~~~~~~~~~G~~~v~w~~d~~Dw~~~~~~~i~~~~~~~~~g~IiL~-- 154 (195)
T 2cc0_A 77 MDSEISRTQQAIAGAGGGTPKLFRPPYGETNATLRSVEAKYGLTEVIWDVDSQDWNNASTDAIVQAVSRLGNGQVILM-- 154 (195)
T ss_dssp HHHHHHHHHHHHHHTTSCCCSEECCGGGCCCHHHHHHHHHTTCEECCCSEECCGGGTCCHHHHHHHHHTCCTTCEEEE--
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEECCCCCcCHHHHHHHHHCCCeEEEeccCCCccCCCCHHHHHHHHhCcCcCeEEEE--
Confidence 444455556666543 2223 34433346799999999999999885421111221 1222333332
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecC
Q 026546 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (237)
Q Consensus 105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~ 153 (237)
|..++ .-+..+-..+..+.++||+.+-+...
T Consensus 155 Hd~~~------------------~t~~al~~ii~~l~~~Gy~~v~l~~~ 185 (195)
T 2cc0_A 155 HDWPA------------------NTLAAIPRIAQTLAGKGLCSGMISPQ 185 (195)
T ss_dssp ESSCH------------------HHHHHHHHHHHHHHHTTEEECEECTT
T ss_pred CCCch------------------hHHHHHHHHHHHHHHCCCEEEEeCcc
Confidence 33221 13456677888899999998877654
No 16
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=63.49 E-value=15 Score=30.61 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=52.7
Q ss_pred CCceEEecccccCHHHHHHHHhcCcEEe--cCCcccccc-c----cccCCCEEEEcCCCCCHHHHHHHHhcCCcE-----
Q 026546 55 EEKIWITNEIIHNPTVNKRLEEMAVQNI--PVEEGKKQF-D----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQI----- 122 (237)
Q Consensus 55 ~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v--~~~~~~~~~-~----~v~~g~~VIirAHGv~~~v~~~l~~~g~~i----- 122 (237)
+.++|+.|+ .--+.|++.|+..+ ++....+.+ + .++...++++|+-+..+...+.|+++|..+
T Consensus 67 ~~~i~aVG~-----~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 141 (229)
T 3p9z_A 67 NIPAYALSE-----PTAKTLQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVV 141 (229)
T ss_dssp TSCEEESSH-----HHHHHHHHTTCCBCCCCC---------CCHHHHTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEE
T ss_pred CCcEEEECH-----HHHHHHHHcCCCeeecCCcccHHHHHHHHHhhCCCCEEEEECCccchHHHHHHHHHCCCeEEEEEE
Confidence 357999985 55689999998753 321111111 1 233345678999988999999999999887
Q ss_pred EeCcChhhHHHHHHHHHHhhCCCeEEEE
Q 026546 123 VDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (237)
Q Consensus 123 vDaTCP~V~kv~~~v~~~~~~Gy~ivIi 150 (237)
+++.||--.. ...+.+....+.+|++
T Consensus 142 Y~~~~~~~~~--~~~~~l~~~~~d~v~f 167 (229)
T 3p9z_A 142 YENKLKHLTL--SEQNALKPKEKSILIF 167 (229)
T ss_dssp EEEEECCCCH--HHHHHHSCCTTCEEEE
T ss_pred EEeeCCCccH--HHHHHHhcCCCeEEEE
Confidence 5555553221 2223343444444444
No 17
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=60.96 E-value=54 Score=29.91 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=63.6
Q ss_pred chhHHHHHHHcCCcceecceEEEE-e-CCCCCcccHHHHHHHHHHHHhhC---CCCceEEecccccCHHHHHHHHhcCcE
Q 026546 6 TSDIIKKLKENGFEYTWGNVKVKL-A-ESYGFCWGVERAVQIAYEARKQF---PEEKIWITNEIIHNPTVNKRLEEMAVQ 80 (237)
Q Consensus 6 ~s~~i~~~~~~~~~~~~g~m~I~l-A-~~~GFC~GV~RAv~~a~~a~~~~---~~~~vy~lgeiIHN~~Vv~~L~~~Gv~ 80 (237)
-.+.+++|++.|.. +|++ . -|.-=|.-+.-+++.+.++.++. +.-++-+....=-+|.-++.|.+.=-.
T Consensus 106 i~~~l~~l~~~G~~------~ivvlPlyPqyS~~Ttgs~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~ 179 (359)
T 3hcn_A 106 TEEAIEEMERDGLE------RAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILK 179 (359)
T ss_dssp HHHHHHHHHHTTCS------EEEEEESCSSCCTTTHHHHHHHHHHHHHHTTCCCSSEEEEECCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC------eEEEEECCccccccchhhHHHHHHHHHHHhccCCCCceEEeCCccCCHHHHHHHHHHHHH
Confidence 34556667766542 2222 2 12112455666677776666542 211355666666778777777654222
Q ss_pred EecCCccccccc-cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhh
Q 026546 81 NIPVEEGKKQFD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142 (237)
Q Consensus 81 ~v~~~~~~~~~~-~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~ 142 (237)
.++. +. +..++..+||+|||+|....+ +| -|+..-+++.++.+.+
T Consensus 180 ~l~~------~~~~~~~~~~LlfSaHgiP~~~~~----~G-------DpY~~q~~~t~~lv~e 225 (359)
T 3hcn_A 180 ELDH------FPLEKRSEVVILFSAHSLPMSVVN----RG-------DPYPQEVSATVQKVME 225 (359)
T ss_dssp HHTT------SCTTTGGGCEEEEEEECCBHHHHT----TT-------CSHHHHHHHHHHHHHH
T ss_pred HHHh------CCccccCCcEEEEEcCCChHhhcc----cC-------CCHHHHHHHHHHHHHH
Confidence 2221 11 112235799999999998753 44 4677777776666554
No 18
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=60.92 E-value=14 Score=28.42 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=21.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCcChhhH
Q 026546 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (237)
Q Consensus 100 VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~ 131 (237)
|+|.+=-..++..+.+++.|++++. -|..|.
T Consensus 86 v~~~~G~~~~e~~~~a~~~Girvv~-nC~gv~ 116 (122)
T 3ff4_A 86 VIFNPGTENEELEEILSENGIEPVI-GCTLVM 116 (122)
T ss_dssp EEECTTCCCHHHHHHHHHTTCEEEE-SCHHHH
T ss_pred EEECCCCChHHHHHHHHHcCCeEEC-CcCeEE
Confidence 3444433467788888888888886 787664
No 19
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=59.25 E-value=68 Score=27.91 Aligned_cols=93 Identities=8% Similarity=-0.043 Sum_probs=56.0
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHH-------
Q 026546 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLN------- 116 (237)
Q Consensus 44 ~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~------- 116 (237)
-||...++. +-+|++.. .||.-.+.|.+.|+...++ +.++-.+.-|||..=.-++.+.+-+.
T Consensus 17 ~mA~~L~~~--G~~v~v~d---r~~~~~~~l~~~Ga~~a~s------~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~ 85 (300)
T 3obb_A 17 PMATNLLKA--GYLLNVFD---LVQSAVDGLVAAGASAARS------ARDAVQGADVVISMLPASQHVEGLYLDDDGLLA 85 (300)
T ss_dssp HHHHHHHHT--TCEEEEEC---SSHHHHHHHHHTTCEECSS------HHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTT
T ss_pred HHHHHHHhC--CCeEEEEc---CCHHHHHHHHHcCCEEcCC------HHHHHhcCCceeecCCchHHHHHHHhchhhhhh
Confidence 356666664 23677765 5789999999999998865 33333332244444444555554442
Q ss_pred --hcCCcEEeCcChhhHHHHHHHHHHhhCCCeE
Q 026546 117 --NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (237)
Q Consensus 117 --~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~i 147 (237)
..|-.+||.|=-......+.++++.++|-..
T Consensus 86 ~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~ 118 (300)
T 3obb_A 86 HIAPGTLVLECSTIAPTSARKIHAAARERGLAM 118 (300)
T ss_dssp SCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 2355677766666666666667776666543
No 20
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=58.95 E-value=45 Score=25.91 Aligned_cols=101 Identities=12% Similarity=0.024 Sum_probs=63.9
Q ss_pred cCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCC
Q 026546 66 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGD 144 (237)
Q Consensus 66 HN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~-ivDaTCP~V~kv~~~v~~~~~~G 144 (237)
.+.+.++.|+++|+.++=- .|+ -.......+++.|+. +++..+|--.-+....+++.-.-
T Consensus 39 ~~~~~l~~L~~~G~~~~i~-----------Tg~--------~~~~~~~~~~~lgl~~~~~~~k~k~~~~~~~~~~~~~~~ 99 (180)
T 1k1e_A 39 RDGLGIKMLMDADIQVAVL-----------SGR--------DSPILRRRIADLGIKLFFLGKLEKETACFDLMKQAGVTA 99 (180)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----------ESC--------CCHHHHHHHHHHTCCEEEESCSCHHHHHHHHHHHHTCCG
T ss_pred chHHHHHHHHHCCCeEEEE-----------eCC--------CcHHHHHHHHHcCCceeecCCCCcHHHHHHHHHHcCCCH
Confidence 3567889999999875521 111 134556666777775 57888888877777777765555
Q ss_pred CeEEEEecCCCcceeeeccccCeeEEE-cChhhHHhhhhhhcCC
Q 026546 145 YTSIIHGKYSHEETVATASFAGKYIIV-KNMKEAEYVCDYILGG 187 (237)
Q Consensus 145 y~ivIiG~~~HpEv~g~~g~a~~~~vv-~~~~e~~~~~~~~~~~ 187 (237)
..++.+||.. .-+.+.. .++-.+++ ...+++...++|++..
T Consensus 100 ~~~~~vGD~~-~Di~~~~-~ag~~~~~~~~~~~~~~~ad~v~~~ 141 (180)
T 1k1e_A 100 EQTAYIGDDS-VDLPAFA-ACGTSFAVADAPIYVKNAVDHVLST 141 (180)
T ss_dssp GGEEEEECSG-GGHHHHH-HSSEEEECTTSCHHHHTTSSEECSS
T ss_pred HHEEEECCCH-HHHHHHH-HcCCeEEeCCccHHHHhhCCEEecC
Confidence 6899999986 3443332 23333344 3455666778887654
No 21
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=58.20 E-value=58 Score=27.15 Aligned_cols=27 Identities=11% Similarity=0.066 Sum_probs=20.4
Q ss_pred eEEecccccCHHHHHHHHhcCcEEecC
Q 026546 58 IWITNEIIHNPTVNKRLEEMAVQNIPV 84 (237)
Q Consensus 58 vy~lgeiIHN~~Vv~~L~~~Gv~~v~~ 84 (237)
.|-.----.|+.+.+.|++.|..++..
T Consensus 126 ~fr~P~G~~~~~~~~~l~~~G~~~~~w 152 (230)
T 2y8u_A 126 YMRPPYLETNELVLQVMRDLDYRVISA 152 (230)
T ss_dssp EECCGGGCCCHHHHHHHHHTTCEEECC
T ss_pred EEECCCCCCCHHHHHHHHHcCCEEEEe
Confidence 344333457999999999999998864
No 22
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=57.81 E-value=14 Score=32.79 Aligned_cols=70 Identities=9% Similarity=0.054 Sum_probs=37.4
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccc-cccCCCEEEEcCCCCCHHH
Q 026546 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFD-VVNKGDVVVLPAFGAAVEE 111 (237)
Q Consensus 36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~-~v~~g~~VIirAHGv~~~v 111 (237)
|....-+.+.+.+++++++.-.+-...+.=-+|..++.|.++=-..+.. +. ..++++.|||+|||+|...
T Consensus 119 ~st~g~~~~~i~~~l~~~~~~~i~~i~~~~~~p~~i~a~a~~i~~~l~~------~~~~~~~~~~llfs~HG~P~~~ 189 (310)
T 2h1v_A 119 TFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYAS------MPEDERENAMLIVSAHSLPEKI 189 (310)
T ss_dssp TTTHHHHHHHHHHHHHHHCSCEEEECCCCTTCHHHHHHHHHHHHHHHHH------SCHHHHTSEEEEEEEECCBGGG
T ss_pred hhhHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHHHHHh------cccccCCCceEEEecCCCchhh
Confidence 3444445555555554443334555556666777766665432111110 00 1134578999999998653
No 23
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=57.40 E-value=58 Score=27.21 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=20.3
Q ss_pred eEEecccccCHHHHHHHHhcCcEEecC
Q 026546 58 IWITNEIIHNPTVNKRLEEMAVQNIPV 84 (237)
Q Consensus 58 vy~lgeiIHN~~Vv~~L~~~Gv~~v~~ 84 (237)
.|-.----.|+.+.+.|+++|...+..
T Consensus 138 ~fr~P~G~~~~~~~~~l~~~G~~~v~w 164 (240)
T 1ny1_A 138 YLRPPRGVFSEYVLKETKRLGYQTVFW 164 (240)
T ss_dssp EECCGGGEECHHHHHHHHHTTCEEBCC
T ss_pred EEeCCCCCCCHHHHHHHHHcCCEEEEC
Confidence 343333467999999999999998753
No 24
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=56.76 E-value=66 Score=27.13 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=17.1
Q ss_pred cccCHHHHHHHHhcCcEEec
Q 026546 64 IIHNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 64 iIHN~~Vv~~L~~~Gv~~v~ 83 (237)
--.|+.+.+.|+++|...+.
T Consensus 156 G~~~~~~~~~l~~~G~~~v~ 175 (247)
T 2j13_A 156 GVFSERTLALTKEMGYYNVF 175 (247)
T ss_dssp GEECHHHHHHHHHTTCEEEC
T ss_pred CCCCHHHHHHHHHCCCEEEe
Confidence 34699999999999999774
No 25
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=56.02 E-value=18 Score=31.72 Aligned_cols=103 Identities=7% Similarity=0.035 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhCCCCceEEe----cccccCH----HHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHH
Q 026546 40 ERAVQIAYEARKQFPEEKIWIT----NEIIHNP----TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEE 111 (237)
Q Consensus 40 ~RAv~~a~~a~~~~~~~~vy~l----geiIHN~----~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v 111 (237)
+........++...|. -+.+. +-+-=|+ .|++.|+++|+-|+|+.. .+. -+ .
T Consensus 110 ~ei~~~l~~al~~vP~-a~GvnNHmGS~~T~~~~~M~~vm~~L~~~gL~FlDS~T---------s~~-------S~---a 169 (261)
T 2qv5_A 110 KVNIDRLHRSMAKITN-YTGVMNYLGGRFLAEQSALEPVMRDIGKRGLLFLDDGS---------SAQ-------SL---S 169 (261)
T ss_dssp HHHHHHHHHHHTTCCC-CSEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEECSC---------CTT-------CC---H
T ss_pred HHHHHHHHHHHHHCCC-cEEEecccccchhcCHHHHHHHHHHHHHCCCEEEcCCC---------Ccc-------cH---H
Confidence 3333444556666663 34443 2233454 466778999999998621 111 11 2
Q ss_pred HHHHHhcCCcE------EeCc--ChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecc
Q 026546 112 MVTLNNKNVQI------VDTT--CPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS 163 (237)
Q Consensus 112 ~~~l~~~g~~i------vDaT--CP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g 163 (237)
.+.+++.|+.. +|.. =..+.+=.+++.+++++--..|.||+. ||+|+....
T Consensus 170 ~~~A~~~gvp~~~rdvFLD~~~~~~~I~~qL~~a~~~Ar~~G~AIaIGhp-~p~Ti~aL~ 228 (261)
T 2qv5_A 170 GGIAKAISAPQGFADVLLDGEVTEASILRKLDDLERIARRNGQAIGVASA-FDESIAAIS 228 (261)
T ss_dssp HHHHHHHTCCEEECSEETTSSCSHHHHHHHHHHHHHHHHHHSEEEEEEEC-CHHHHHHHH
T ss_pred HHHHHHcCCCeEEeeeecCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeCC-CHHHHHHHH
Confidence 33345555554 3432 233444445555555554468889997 888765543
No 26
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=55.89 E-value=67 Score=26.05 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=17.2
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHH
Q 026546 94 VNKGDVV-VLPAFGAAVEEMVTL 115 (237)
Q Consensus 94 v~~g~~V-IirAHGv~~~v~~~l 115 (237)
+.++|.| +|+.-|-++++.+.+
T Consensus 112 ~~~~Dvvi~iS~SG~t~~~~~~~ 134 (201)
T 3trj_A 112 GNEDDILLVITTSGDSENILSAV 134 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHH
Confidence 4567875 589999999988766
No 27
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=55.84 E-value=21 Score=29.81 Aligned_cols=115 Identities=12% Similarity=0.088 Sum_probs=69.4
Q ss_pred chhHHHHHHHcCCcceecc-eEEEEe--------------CCCCCcccHHHHHHHHHHHHhh-C---CCCceEEeccccc
Q 026546 6 TSDIIKKLKENGFEYTWGN-VKVKLA--------------ESYGFCWGVERAVQIAYEARKQ-F---PEEKIWITNEIIH 66 (237)
Q Consensus 6 ~s~~i~~~~~~~~~~~~g~-m~I~lA--------------~~~GFC~GV~RAv~~a~~a~~~-~---~~~~vy~lgeiIH 66 (237)
.+++.+.+++.|.....-+ +++.-. ..-...|==.+||+...+.+++ + ++.++|+.|+
T Consensus 18 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~~~~~~~~i~aVG~--- 94 (254)
T 4es6_A 18 CAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQPPQQTWCSVGA--- 94 (254)
T ss_dssp HHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHCSSCCSCEEEESSH---
T ss_pred hHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECH---
Confidence 4688999999985444332 233211 1223344445666655554432 2 2247888885
Q ss_pred CHHHHHHHHhcCcEEecC--Cccc----cccc-----cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 026546 67 NPTVNKRLEEMAVQNIPV--EEGK----KQFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (237)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~--~~~~----~~~~-----~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDa 125 (237)
.--+.|++.|+...-. .... +.+. ..+...++++|+-+..+...+.|+++|+.+...
T Consensus 95 --~Ta~~L~~~G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~ 162 (254)
T 4es6_A 95 --ATAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQGVQVDYL 162 (254)
T ss_dssp --HHHHHHHHHTCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEE
T ss_pred --HHHHHHHHcCCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEE
Confidence 4558899999975422 1111 1221 233345678999999999999999999988443
No 28
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=55.36 E-value=46 Score=25.94 Aligned_cols=111 Identities=6% Similarity=-0.039 Sum_probs=71.5
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEE
Q 026546 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (237)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivI 149 (237)
.++.|+++|+.+. |++ -+-.......++..|+.+++...|-..-+....+++.-...+++.
T Consensus 47 ~l~~L~~~g~~~~------------------i~T-~~~~~~~~~~~~~lgi~~~~~~~~k~~~l~~~~~~~~~~~~~~~~ 107 (176)
T 3mmz_A 47 GIAALRKSGLTML------------------ILS-TEQNPVVAARARKLKIPVLHGIDRKDLALKQWCEEQGIAPERVLY 107 (176)
T ss_dssp HHHHHHHTTCEEE------------------EEE-SSCCHHHHHHHHHHTCCEEESCSCHHHHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHCCCeEE------------------EEE-CcChHHHHHHHHHcCCeeEeCCCChHHHHHHHHHHcCCCHHHEEE
Confidence 6888888887654 111 112456677777888888999999999999988888777788999
Q ss_pred EecCCCcceeeeccccCeeEEE-cChhhHHhhhhhhcCCccCCCCchHHHHHHHH
Q 026546 150 HGKYSHEETVATASFAGKYIIV-KNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203 (237)
Q Consensus 150 iG~~~HpEv~g~~g~a~~~~vv-~~~~e~~~~~~~~~~~q~~~~~~~~~~f~~~f 203 (237)
+||..+-- .+. -.++-.+++ ...+++...++|++.. .+..+-..++.+.+
T Consensus 108 vGD~~nD~-~~~-~~ag~~v~~~~~~~~~~~~ad~v~~~--~~~~g~~~~l~~~l 158 (176)
T 3mmz_A 108 VGNDVNDL-PCF-ALVGWPVAVASAHDVVRGAARAVTTV--PGGDGAIREIASWI 158 (176)
T ss_dssp EECSGGGH-HHH-HHSSEEEECTTCCHHHHHHSSEECSS--CTTTTHHHHHHHHH
T ss_pred EcCCHHHH-HHH-HHCCCeEECCChhHHHHHhCCEEecC--CCCCcHHHHHHHHH
Confidence 99986432 111 123434455 3445677778888754 12223344554444
No 29
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=54.93 E-value=14 Score=28.84 Aligned_cols=76 Identities=25% Similarity=0.459 Sum_probs=48.2
Q ss_pred CCcccchhHHHHHHHc-CCcceecceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcC
Q 026546 1 MNQEYTSDIIKKLKEN-GFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (237)
Q Consensus 1 ~~~~~~s~~i~~~~~~-~~~~~~g~m~I~lA~~~GF-C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~G 78 (237)
|+.+-++.|++..+.. |.++.||+.. +.|| |.|.-+ .+++. .++ |.-|..-......|
T Consensus 1 m~~~~r~~i~~~A~~~lG~pY~~Gg~~-----~~g~DCSGlv~---~~~~~--~~G----------i~lpr~s~~q~~~g 60 (136)
T 2jyx_A 1 MNVDVKSRIMDQYADWKGVRYRLGGST-----KKGIDCSGFVQ---RTFRE--QFG----------LELPRSTYEQQEMG 60 (136)
T ss_dssp CCCCHHHHHHHHHHHHSSCCBCTTCEE-----TTEECHHHHHH---HHHHH--HTC----------CCCCSSHHHHGGGS
T ss_pred CCHHHHHHHHHHHHHhCCCCccCCCCC-----CCCeEHHHHHH---HHHHH--hcC----------CCCCCCHHHHHhcC
Confidence 5667788888877665 7999999865 6788 999755 33331 122 11233334455555
Q ss_pred cEEecCCccccccccccCCCEEEEcC
Q 026546 79 VQNIPVEEGKKQFDVVNKGDVVVLPA 104 (237)
Q Consensus 79 v~~v~~~~~~~~~~~v~~g~~VIirA 104 (237)
-. ++ .+++.+||.|+|+.
T Consensus 61 ~~-v~-------~~~l~pGDLvff~~ 78 (136)
T 2jyx_A 61 KS-VS-------RSNLRTGDLVLFRA 78 (136)
T ss_dssp EE-CC-------TTTCCTTEEEEEEC
T ss_pred eE-cc-------hHhCCCCCEEEECC
Confidence 33 32 36677899999874
No 30
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=54.30 E-value=37 Score=29.45 Aligned_cols=93 Identities=9% Similarity=-0.065 Sum_probs=54.6
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHH-------HHHh
Q 026546 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMV-------TLNN 117 (237)
Q Consensus 45 ~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~-------~l~~ 117 (237)
||...++. +-+|+++. -|+...++|.+.|+...++ +.++-++.-|||..=.-++.+.+ ....
T Consensus 20 mA~~L~~~--G~~V~v~d---r~~~~~~~l~~~G~~~~~s------~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~ 88 (297)
T 4gbj_A 20 IAEILLEA--GYELVVWN---RTASKAEPLTKLGATVVEN------AIDAITPGGIVFSVLADDAAVEELFSMELVEKLG 88 (297)
T ss_dssp HHHHHHHT--TCEEEEC----------CTTTTTTCEECSS------GGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHC
T ss_pred HHHHHHHC--CCeEEEEe---CCHHHHHHHHHcCCeEeCC------HHHHHhcCCceeeeccchhhHHHHHHHHHHhhcC
Confidence 55555554 23677665 4778889999999998875 34443333355554444443332 2235
Q ss_pred cCCcEEeCcChhhHHHHHHHHHHhhCCCeEE
Q 026546 118 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (237)
Q Consensus 118 ~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~iv 148 (237)
+|-.+||.+=-......+.++++.++|...+
T Consensus 89 ~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l 119 (297)
T 4gbj_A 89 KDGVHVSMSTISPETSRQLAQVHEWYGAHYV 119 (297)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence 6778899777777777888888888886654
No 31
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=52.70 E-value=65 Score=27.88 Aligned_cols=84 Identities=8% Similarity=-0.018 Sum_probs=51.6
Q ss_pred cccHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHhcCcEEecCCccc-------------------cccccc
Q 026546 36 CWGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEGK-------------------KQFDVV 94 (237)
Q Consensus 36 C~GV~RAv~~a~~a~~~~~-~~~vy~lgeiI-HN~~Vv~~L~~~Gv~~v~~~~~~-------------------~~~~~v 94 (237)
-+|-+..+..+.+++++++ ....|+.|..+ .||.+++++.+.|-.+-...-.- +.+.++
T Consensus 76 DdG~~~~~~~ll~iL~~~~v~aTfFv~g~~~~~~p~~v~~i~~~GheIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~~ 155 (308)
T 3cl6_A 76 EYGSRAGVWRILKLFKAFDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTEL 155 (308)
T ss_dssp HHHHHTHHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhHHHHHHHHHHcCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEEeCCCCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 3444444555555566553 23688998865 79999999999997654321100 012222
Q ss_pred cCCCEEEEcCCCCCHHHHHHHHhcC
Q 026546 95 NKGDVVVLPAFGAAVEEMVTLNNKN 119 (237)
Q Consensus 95 ~~g~~VIirAHGv~~~v~~~l~~~g 119 (237)
..-....+|+-..++...+.|++.|
T Consensus 156 ~G~~p~g~r~~~~~~~~~~~l~~~G 180 (308)
T 3cl6_A 156 TGERPLGWYTGRTGPNTRRLVMEEG 180 (308)
T ss_dssp HSSCCSEECCSSCCTTHHHHHHHHC
T ss_pred hCCCcceEECCCCCHHHHHHHHHCC
Confidence 2122345777566788999999988
No 32
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=52.04 E-value=89 Score=24.92 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCeEEEE
Q 026546 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (237)
Q Consensus 109 ~~v~~~l~~~g~~i-vDaTCP~V~kv~~~v~~~~~~Gy~ivIi 150 (237)
.+..+.+++.|+.+ +|..+|+- ....++++.+.|-..|.+
T Consensus 93 ~~~~~~~~~~g~~~~v~~~~~~t--~~~~~~~~~~~g~d~i~v 133 (211)
T 3f4w_A 93 QSCIRAAKEAGKQVVVDMICVDD--LPARVRLLEEAGADMLAV 133 (211)
T ss_dssp HHHHHHHHHHTCEEEEECTTCSS--HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHHcCCCEEEE
Confidence 45566677777765 46555531 223445555555555544
No 33
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=50.79 E-value=57 Score=29.69 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=37.0
Q ss_pred eEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHH
Q 026546 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137 (237)
Q Consensus 58 vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v 137 (237)
+-...+.=-+|..++.|.++=-..+.... .+.+++..|+|+|||+|....+ +| -|+..-+++.+
T Consensus 162 i~~i~~~~~~p~~I~ala~~I~~~l~~~~-----~~~~~~~~llfSaHglP~~~~~----~G-------DpY~~q~~~ta 225 (362)
T 1lbq_A 162 WSVIDRWPTNEGLIKAFSENITKKLQEFP-----QPVRDKVVLLFSAHSLPMDVVN----TG-------DAYPAEVAATV 225 (362)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHHTSC-----STTGGGCEEEEEEECCBHHHHT----TT-------CSHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhcC-----cccCCCeEEEEecCCCcccccc----CC-------CcHHHHHHHHH
Confidence 34666666677777776553211111100 0011235899999999988752 33 44656555555
Q ss_pred HHH
Q 026546 138 EKH 140 (237)
Q Consensus 138 ~~~ 140 (237)
+.+
T Consensus 226 ~ll 228 (362)
T 1lbq_A 226 YNI 228 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 34
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=50.79 E-value=52 Score=27.79 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=69.1
Q ss_pred chhHHHHHHHcCCcceecc-eEEEE--------------eCCCCCcccHHHHHHHHHHHHhh-CC---CCceEEeccccc
Q 026546 6 TSDIIKKLKENGFEYTWGN-VKVKL--------------AESYGFCWGVERAVQIAYEARKQ-FP---EEKIWITNEIIH 66 (237)
Q Consensus 6 ~s~~i~~~~~~~~~~~~g~-m~I~l--------------A~~~GFC~GV~RAv~~a~~a~~~-~~---~~~vy~lgeiIH 66 (237)
.+++.+.+++.|+....-+ +++.- .+.-...|==.+||+...+.+++ ++ ..++|+.|+
T Consensus 26 a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~~~~~~~~i~aVG~--- 102 (269)
T 3re1_A 26 SAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVWPQPPMQPWFSVGS--- 102 (269)
T ss_dssp HHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHCSSCCCSCEEESSH---
T ss_pred HHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECH---
Confidence 4788999999985544432 23321 11223344445666665554432 22 247899885
Q ss_pred CHHHHHHHHhcCcEEecCCc--ccc----ccc-----cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 026546 67 NPTVNKRLEEMAVQNIPVEE--GKK----QFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (237)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~~~--~~~----~~~-----~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDa 125 (237)
.--+.|++.|+...-..+ ..+ .+. ..+...++++|+-+..+...+.|+++|+.+...
T Consensus 103 --~Ta~aL~~~G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~ 170 (269)
T 3re1_A 103 --ATGQILLDYGLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRERGVGVDYL 170 (269)
T ss_dssp --HHHHHHHHTTCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEE
T ss_pred --HHHHHHHHcCCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHHCCCEEEEE
Confidence 556899999987542211 111 121 223345678999999999999999999987443
No 35
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=50.57 E-value=71 Score=26.18 Aligned_cols=93 Identities=12% Similarity=0.175 Sum_probs=49.5
Q ss_pred HHHHHHHHHH-HHhhCCCCceEEeccccc---CHHHHHHHHhcCcEEecCCcc---ccccccccCCCEE-EEcCCCCCHH
Q 026546 39 VERAVQIAYE-ARKQFPEEKIWITNEIIH---NPTVNKRLEEMAVQNIPVEEG---KKQFDVVNKGDVV-VLPAFGAAVE 110 (237)
Q Consensus 39 V~RAv~~a~~-a~~~~~~~~vy~lgeiIH---N~~Vv~~L~~~Gv~~v~~~~~---~~~~~~v~~g~~V-IirAHGv~~~ 110 (237)
+++|+++..+ +.+. .++||+.|-=-- -.....+|...|....--.+. ...+..+.++|.| +|+.-|-+++
T Consensus 44 i~~~~~~i~~~a~~~--a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~~ 121 (220)
T 3etn_A 44 YEKAVELIVEQIHRK--KGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTRE 121 (220)
T ss_dssp HHHHHHHHHHHTTTT--CCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCHH
T ss_pred HHHHHHHHHhHhhcc--CCEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCHH
Confidence 4555554443 2221 246887773211 111233456666543321111 0123445667765 5888899988
Q ss_pred HHH---HHHh--cCCcEEeCcChhhHHH
Q 026546 111 EMV---TLNN--KNVQIVDTTCPWVSKV 133 (237)
Q Consensus 111 v~~---~l~~--~g~~ivDaTCP~V~kv 133 (237)
+.+ .+++ +|..+|=-|+..-+.+
T Consensus 122 ~i~~~~~ak~~~~Ga~vI~IT~~~~s~L 149 (220)
T 3etn_A 122 IVELTQLAHNLNPGLKFIVITGNPDSPL 149 (220)
T ss_dssp HHHHHHHHHHHCTTCEEEEEESCTTSHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCChh
Confidence 764 5667 8888877776554443
No 36
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=49.99 E-value=47 Score=24.95 Aligned_cols=112 Identities=9% Similarity=-0.077 Sum_probs=72.3
Q ss_pred HHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCCeE
Q 026546 69 TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTS 147 (237)
Q Consensus 69 ~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~-ivDaTCP~V~kv~~~v~~~~~~Gy~i 147 (237)
..++.|+++|+.+. |++ -+-.......++..|+. +++...|--.-+....+++.-.-..+
T Consensus 38 ~~l~~l~~~g~~~~------------------i~T-~~~~~~~~~~~~~~gl~~~~~~~kpk~~~~~~~~~~~~~~~~~~ 98 (164)
T 3e8m_A 38 AGIFWAHNKGIPVG------------------ILT-GEKTEIVRRRAEKLKVDYLFQGVVDKLSAAEELCNELGINLEQV 98 (164)
T ss_dssp HHHHHHHHTTCCEE------------------EEC-SSCCHHHHHHHHHTTCSEEECSCSCHHHHHHHHHHHHTCCGGGE
T ss_pred HHHHHHHHCCCEEE------------------EEe-CCChHHHHHHHHHcCCCEeecccCChHHHHHHHHHHcCCCHHHE
Confidence 36788888886543 122 12346677778888886 67888898888888888887777889
Q ss_pred EEEecCCCcceeeeccccCeeEEE-cChhhHHhhhhhhcCCccCCCCchHHHHHHHH
Q 026546 148 IIHGKYSHEETVATASFAGKYIIV-KNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203 (237)
Q Consensus 148 vIiG~~~HpEv~g~~g~a~~~~vv-~~~~e~~~~~~~~~~~q~~~~~~~~~~f~~~f 203 (237)
+.+||.. --+.+.. .++-.+++ ...+++...++|++.. .+..+-..++++.+
T Consensus 99 ~~vGD~~-~Di~~~~-~ag~~~~~~~~~~~~~~~ad~v~~~--~~~~g~~~e~~~~l 151 (164)
T 3e8m_A 99 AYIGDDL-NDAKLLK-RVGIAGVPASAPFYIRRLSTIFLEK--RGGEGVFREFVEKV 151 (164)
T ss_dssp EEECCSG-GGHHHHT-TSSEEECCTTSCHHHHTTCSSCCCC--CTTTTHHHHHHHHH
T ss_pred EEECCCH-HHHHHHH-HCCCeEEcCChHHHHHHhCcEEecc--CCCCcHHHHHHHHH
Confidence 9999987 3343332 22323333 5566777778888764 11122255555555
No 37
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=49.90 E-value=54 Score=28.60 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=39.3
Q ss_pred CceEEecccccCHHHHHHHHhcCcEEecCCcccccccccc--CCCEEEEcCCCCCH--HHHHHHHhcCCcEEe
Q 026546 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN--KGDVVVLPAFGAAV--EEMVTLNNKNVQIVD 124 (237)
Q Consensus 56 ~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~--~g~~VIirAHGv~~--~v~~~l~~~g~~ivD 124 (237)
-.|...-. =-++...+.|++.|+.+.... +.+.+. +-|.| +-+=|+|+ .+.++++++|+.|+-
T Consensus 29 ~~V~~~D~-~~~~~~~~~L~~~gi~v~~g~----~~~~l~~~~~d~v-V~Spgi~~~~p~~~~a~~~gi~v~~ 95 (326)
T 3eag_A 29 FEVSGCDA-KMYPPMSTQLEALGIDVYEGF----DAAQLDEFKADVY-VIGNVAKRGMDVVEAILNLGLPYIS 95 (326)
T ss_dssp CEEEEEES-SCCTTHHHHHHHTTCEEEESC----CGGGGGSCCCSEE-EECTTCCTTCHHHHHHHHTTCCEEE
T ss_pred CEEEEEcC-CCCcHHHHHHHhCCCEEECCC----CHHHcCCCCCCEE-EECCCcCCCCHHHHHHHHcCCcEEe
Confidence 35655432 223456789999999987531 224453 23544 44558875 456788899999873
No 38
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=49.52 E-value=1e+02 Score=27.50 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=34.0
Q ss_pred ccccccCCCEEEEcCC-CCCHHHHHHHHhcCCcEEeC--------cChhhHH
Q 026546 90 QFDVVNKGDVVVLPAF-GAAVEEMVTLNNKNVQIVDT--------TCPWVSK 132 (237)
Q Consensus 90 ~~~~v~~g~~VIirAH-Gv~~~v~~~l~~~g~~ivDa--------TCP~V~k 132 (237)
++..+.+|+.++...| ++.++..+.+.++|+++|+. ..|.+..
T Consensus 81 e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~ 132 (377)
T 2vhw_A 81 EYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAP 132 (377)
T ss_dssp GGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHH
T ss_pred HHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCc
Confidence 4556667888888877 57899999999999999965 5676663
No 39
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=48.28 E-value=21 Score=30.44 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=66.8
Q ss_pred hhHHHHHHHcCCcceecc-eEEEEe-------------CCCCCcccHHHHHHHHHHHHhh--------------CCCCce
Q 026546 7 SDIIKKLKENGFEYTWGN-VKVKLA-------------ESYGFCWGVERAVQIAYEARKQ--------------FPEEKI 58 (237)
Q Consensus 7 s~~i~~~~~~~~~~~~g~-m~I~lA-------------~~~GFC~GV~RAv~~a~~a~~~--------------~~~~~v 58 (237)
+++.+.+++.|+....-+ ++|.-. ..-...|==.+||+...+.+++ +++.++
T Consensus 38 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~~d~~~~l~~~~i 117 (286)
T 1jr2_A 38 DPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSV 117 (286)
T ss_dssp CHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEE
T ss_pred cHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHHHHHHHHHHHhccccccchhhHHHHhccCcE
Confidence 889999999996544433 333311 1112233334444444333221 123579
Q ss_pred EEecccccCHHHHHHHHhcCcEE-ecCCccccccc-----c-ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 026546 59 WITNEIIHNPTVNKRLEEMAVQN-IPVEEGKKQFD-----V-VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (237)
Q Consensus 59 y~lgeiIHN~~Vv~~L~~~Gv~~-v~~~~~~~~~~-----~-v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDa 125 (237)
|+.| |.--+.|++.|+.. +++....+.+- . .+...++++|+-+..+...+.|+++|+.|...
T Consensus 118 ~aVG-----~~Ta~aL~~~G~~~~~p~~~~ae~L~~~l~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~ 186 (286)
T 1jr2_A 118 YVVG-----NATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESI 186 (286)
T ss_dssp EECS-----HHHHHHHHHTTCCCSCCSCSSHHHHHHHHHTSCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEE
T ss_pred EEEC-----HHHHHHHHHcCCCcCCCCccCHHHHHHHHHhcccCCCeEEEECChhhHHHHHHHHHHCCCeeEEE
Confidence 9998 45668899999875 33221111111 1 22245778888888889999999999977443
No 40
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=46.96 E-value=68 Score=24.21 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=42.9
Q ss_pred CCCceEEeccccc-CHHHH-HHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 026546 54 PEEKIWITNEIIH-NPTVN-KRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (237)
Q Consensus 54 ~~~~vy~lgeiIH-N~~Vv-~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDa 125 (237)
.+..+.+.|.+-. ++... +.+++.|.++.... +. .-|.||.-. ...+.-+++|++.|+.|||-
T Consensus 34 ~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sV------Sk--kTd~LV~G~-~~g~sK~~kA~~lgI~Ii~E 98 (109)
T 2k6g_A 34 EGLIFVITGVLESIERDEAKSLIERYGGKVTGNV------SK--KTNYLVMGR-DSGQSKSDKAAALGTKIIDE 98 (109)
T ss_dssp TTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSC------CT--TCCEEEECB-CCCHHHHHHHHHHTCEEECH
T ss_pred CCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcc------cC--CceEEEECC-CCChHHHHHHHHcCCeEEeH
Confidence 3567999999954 55554 45588899988652 11 235565544 34567788999999999873
No 41
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=45.71 E-value=27 Score=30.44 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=41.4
Q ss_pred cCCCEEE-EcCCCCCHHHHHHHHh--cCCcE-EeCcChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 026546 95 NKGDVVV-LPAFGAAVEEMVTLNN--KNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (237)
Q Consensus 95 ~~g~~VI-irAHGv~~~v~~~l~~--~g~~i-vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~ 154 (237)
++|++|+ +..-|+...+...+.+ +.++| ++-|-|+-.- +..+.++.+.|-.+.++++..
T Consensus 108 ~~g~~IlT~~~s~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG-~~~a~~L~~~gI~vtli~dsa 170 (276)
T 1vb5_A 108 DDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEG-LHLARELEFSGIEFEVITDAQ 170 (276)
T ss_dssp CTTEEEECCSCCHHHHHHHHHHHHTTCCEEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGG
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEEeCCCcchhh-HHHHHHHHHCCCCEEEEcHHH
Confidence 4577655 3333444455556655 34445 7789999877 888999999999999999654
No 42
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=44.59 E-value=39 Score=31.47 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=38.3
Q ss_pred CceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCH--HHHHHHHhcCCcEE
Q 026546 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--EEMVTLNNKNVQIV 123 (237)
Q Consensus 56 ~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~--~v~~~l~~~g~~iv 123 (237)
-.|... +.=-+| ..+.|++.|+.+...- +.+.+.+-|.||+ +=|+|+ .++..++++|+.|+
T Consensus 47 ~~V~~~-D~~~~~-~~~~l~~~gi~~~~g~----~~~~~~~~d~vV~-Spgi~~~~p~~~~a~~~gi~v~ 109 (494)
T 4hv4_A 47 YQISGS-DLAPNS-VTQHLTALGAQIYFHH----RPENVLDASVVVV-STAISADNPEIVAAREARIPVI 109 (494)
T ss_dssp CEEEEE-CSSCCH-HHHHHHHTTCEEESSC----CGGGGTTCSEEEE-CTTSCTTCHHHHHHHHTTCCEE
T ss_pred CeEEEE-ECCCCH-HHHHHHHCCCEEECCC----CHHHcCCCCEEEE-CCCCCCCCHHHHHHHHCCCCEE
Confidence 355554 332334 5688999999987531 2233444465555 458876 56777888998886
No 43
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Probab=40.62 E-value=1.7e+02 Score=24.92 Aligned_cols=90 Identities=12% Similarity=-0.049 Sum_probs=52.2
Q ss_pred CCcccHHHHHHHHHHHHhhCCC-CceEEeccc----------ccCHH----HHHHHHhcCcEEecCCccccccccc-cCC
Q 026546 34 GFCWGVERAVQIAYEARKQFPE-EKIWITNEI----------IHNPT----VNKRLEEMAVQNIPVEEGKKQFDVV-NKG 97 (237)
Q Consensus 34 GFC~GV~RAv~~a~~a~~~~~~-~~vy~lgei----------IHN~~----Vv~~L~~~Gv~~v~~~~~~~~~~~v-~~g 97 (237)
+.+.+.+.+.+.+.+..+...+ -++|..|.+ --.+. +++..++.|+.+.-...+...+... ..|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~G~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~~~~g 240 (403)
T 3gnh_A 161 FNSDSPDEARKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIREAVRAG 240 (403)
T ss_dssp TCCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEeecCCcCCCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC
Confidence 4567888888888887765321 146655442 23443 4455567798875432221111111 124
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcEE
Q 026546 98 DVVVLPAFGAAVEEMVTLNNKNVQIV 123 (237)
Q Consensus 98 ~~VIirAHGv~~~v~~~l~~~g~~iv 123 (237)
-..|.=..-++++..+.++++|+.++
T Consensus 241 ~~~i~H~~~~~~~~~~~~~~~g~~~~ 266 (403)
T 3gnh_A 241 VDTIEHASLVDDEGIKLAVQKGAYFS 266 (403)
T ss_dssp CSEEEECTTCCHHHHHHHHHHTCEEE
T ss_pred CCEEecCCcCCHHHHHHHHHCCCEEE
Confidence 33444333459999999999999886
No 44
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=40.31 E-value=97 Score=25.99 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=29.2
Q ss_pred ceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCH
Q 026546 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 109 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~ 109 (237)
++.+..++--+|..++.|.++=-...+. ..++++.|||.+||.|.
T Consensus 114 ~i~~~~pl~~~p~~i~~la~~i~~~~~~--------~~~~~~~lll~~HGs~~ 158 (269)
T 2xvy_A 114 RVSVGLPLIGTTADAEAVAEALVASLPA--------DRKPGEPVVFMGHGTPH 158 (269)
T ss_dssp EEEEECCSSCSHHHHHHHHHHHHHHSCT--------TCCTTCCEEEEECCCSS
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhchh--------hccCCceEEEEECCCCh
Confidence 5778888888888877765432111111 01245679999999995
No 45
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=38.54 E-value=93 Score=27.63 Aligned_cols=95 Identities=11% Similarity=0.103 Sum_probs=59.2
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec--CCcccccccc---ccCCC
Q 026546 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEGKKQFDV---VNKGD 98 (237)
Q Consensus 24 ~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~--~~~~~~~~~~---v~~g~ 98 (237)
++-.+.-+|.-||-|+..|++.+.+. .|..+|-+ -++|....+...+.|+-.+. +-+ .+++.+ ...+.
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~---~~~~~IeV---Ev~tl~ea~eAl~aGaD~I~LDn~~-~~~l~~av~~~~~~ 242 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKL---DSNKVVEV---EVTNLDELNQAIAAKADIVMLDNFS-GEDIDIAVSIARGK 242 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHH---CTTSCEEE---EESSHHHHHHHHHTTCSEEEEESCC-HHHHHHHHHHHTTT
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhh---CCCCcEEE---EeCCHHHHHHHHHcCCCEEEEcCCC-HHHHHHHHHhhcCC
Confidence 45555578889999999999988553 34456766 57787666655566776653 211 011111 11256
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 026546 99 VVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (237)
Q Consensus 99 ~VIirAHGv~~~v~~~l~~~g~~ivDa 125 (237)
+.|.-+=|++++....+.+.|+.+|-.
T Consensus 243 v~ieaSGGIt~~~i~~~a~tGVD~Isv 269 (287)
T 3tqv_A 243 VALEVSGNIDRNSIVAIAKTGVDFISV 269 (287)
T ss_dssp CEEEEESSCCTTTHHHHHTTTCSEEEC
T ss_pred ceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 677778889999888888888888754
No 46
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=38.53 E-value=7.8 Score=29.43 Aligned_cols=31 Identities=32% Similarity=0.729 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCcE-----------EeCcChhh-------HHHHHHHHHH
Q 026546 110 EEMVTLNNKNVQI-----------VDTTCPWV-------SKVWTSVEKH 140 (237)
Q Consensus 110 ~v~~~l~~~g~~i-----------vDaTCP~V-------~kv~~~v~~~ 140 (237)
...+.|++||++| ||-+|||- -+.|++|-+-
T Consensus 14 ~lk~lLk~RgIkVkk~~L~~Ff~fi~~~cPWFp~eGtl~l~~W~kVG~~ 62 (94)
T 1bax_A 14 QLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDC 62 (94)
T ss_pred HHHHHHHHcCeeecHHHHHHHHHHHHHhCCCcCcCCcccHHHHHHHHHH
Confidence 4567888999988 99999984 4566666543
No 47
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=38.18 E-value=1.3e+02 Score=23.72 Aligned_cols=113 Identities=10% Similarity=0.014 Sum_probs=60.3
Q ss_pred cceEEE-EeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc--CcEEecCCccccc-cccccC--
Q 026546 23 GNVKVK-LAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQ-FDVVNK-- 96 (237)
Q Consensus 23 g~m~I~-lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~--Gv~~v~~~~~~~~-~~~v~~-- 96 (237)
+.|+|. ++..-|.. -..|++.+.+.....+ ..|+.+|+++. +.+.+.|++. .+.++...-+... +..+|.
T Consensus 21 ~mmri~~iSD~Hg~~--~~~~l~~~l~~~~~~~-D~ii~~GD~~~-~~~~~~l~~~~~~v~~V~GNhD~~~~~~~lp~~~ 96 (178)
T 2kkn_A 21 GVKRFLLISDSHVPV--RMASLPDEILNSLKEY-DGVIGLGDYVD-LDTVILLEKFSKEFYGVHGNMDYPDVKEHLPFSK 96 (178)
T ss_dssp -CEEEEEECCCCBTT--TTCCCCHHHHHGGGGC-SEEEESSCBSC-HHHHHHHHHHTSSEEECCCSSSCGGGGGTSCSCE
T ss_pred cceEEEEEecccCCC--CHHHHHHHHHHHhcCC-CEEEECCCCCC-HHHHHHHHhcCCCEEEEECCCCcHHHHhhCCcce
Confidence 447764 55666621 1122222222211223 47999999987 5788999887 4666754322111 223332
Q ss_pred ----CCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCccee
Q 026546 97 ----GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (237)
Q Consensus 97 ----g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~ 159 (237)
+..-|+=.||-++. . .....+.+..+.+..+++.|+.-.|.+.
T Consensus 97 ~~~~~g~~i~l~HG~~~~------------------~--~~~~~~~~~~~~~~d~vi~GHtH~~~~~ 143 (178)
T 2kkn_A 97 VLLVEGVTIGMCHGWGAP------------------W--DLKDRLLKVFNEKPQVILFGHTHEPEDT 143 (178)
T ss_dssp EEEETTEEEEECCSCCCH------------------H--HHHHHHHHHSSSCCSEEECCSCSSCCEE
T ss_pred EEEECCEEEEEECCCCCC------------------C--CHHHHHHHHhccCCCEEEECccCCCCeE
Confidence 22335567876421 0 0111222223378899999998888765
No 48
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.73 E-value=1.1e+02 Score=23.19 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=41.7
Q ss_pred CCceEEeccccc-CHHHHH-HHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 026546 55 EEKIWITNEIIH-NPTVNK-RLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (237)
Q Consensus 55 ~~~vy~lgeiIH-N~~Vv~-~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDa 125 (237)
+..+.+.|.|-. ++...+ .+++.|.++.... + ..-+.||.-.. ..+.-+++|++.|+.|||-
T Consensus 25 G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sV------S--kkTd~LV~G~~-~g~sKl~KA~~lgI~IisE 88 (112)
T 2ebu_A 25 GLIFVITGVLESIERDEAKSLIERYGGKVTGNV------S--KKTNYLVMGRD-SGQSKSDKAAALGTKIIDE 88 (112)
T ss_dssp TCEEEECSCCSSSCHHHHHHHHHHTTCEECSSC------C--SSCCEEEECSS-CCSHHHHHHHHHTCEEEEH
T ss_pred CCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccc------c--CCeeEEEecCC-CChHHHHHHHHcCCeEEeH
Confidence 467889999954 655554 5588899988652 1 12355665543 3346678899999999974
No 49
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=35.83 E-value=2e+02 Score=24.25 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=27.0
Q ss_pred ceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCH
Q 026546 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 109 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~ 109 (237)
.|.+..||--+|.-.+.|.+. +.+ .+.+.++++.|++-+||.+.
T Consensus 106 ~i~~~~pl~~~~~~~~~l~~~----l~~-----~~~~~~~~~~lvl~gHGs~~ 149 (264)
T 2xwp_A 106 RLTLGVPLLSSHNDYVQLMQA----LRQ-----QMPSLRQTEKVVFMGHGASH 149 (264)
T ss_dssp EEEEECCSSCSHHHHHHHHHH----HHT-----TSCCCCTTEEEEEEECCCSS
T ss_pred ceEEecCCCCCHHHHHHHHHH----HHH-----hccccCCCCeEEEEECCCCc
Confidence 577778888887555544322 111 12223356689999999985
No 50
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}
Probab=35.09 E-value=1.2e+02 Score=25.57 Aligned_cols=102 Identities=13% Similarity=0.003 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhC-CCCceEEecc---cccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHH
Q 026546 41 RAVQIAYEARKQF-PEEKIWITNE---IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLN 116 (237)
Q Consensus 41 RAv~~a~~a~~~~-~~~~vy~lge---iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~ 116 (237)
+=|+.+.+++++. +.++.+..-| --.|+.+.+.|++.|...+.-.-+..|+.. + + + +...+.+.++
T Consensus 105 ~ei~~~~~~l~~~~G~~~~~fr~P~~~G~~~~~~~~~l~~~G~~~v~w~vd~~Dw~~-~-~------~--~~~~v~~~~~ 174 (254)
T 2vyo_A 105 NNVDREIDTIDGLSGTEIRYAAVPICNGQVNSEMYNILTERGVLPVGYTFCPYDYDD-P-V------G--EFESMIEGSD 174 (254)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEECCCBTTEECHHHHHHHHTTTCEECCCSBCGGGSSS-H-H------H--HHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCCCeEEeCCccCCCCCHHHHHHHHHCCCEEEEeccCCccccc-c-h------H--HHHHHHHhcc
Confidence 3344444444431 2234454422 357999999999999999864222122211 0 0 0 1122222222
Q ss_pred h--cCCcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEec
Q 026546 117 N--KNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGK 152 (237)
Q Consensus 117 ~--~g~~i--vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~ 152 (237)
. .|..| -|.--.-+..+-+.+..+.++||+++-+.+
T Consensus 175 ~~~~g~IiL~Hd~~~~t~~aL~~ii~~l~~~Gy~fvtl~e 214 (254)
T 2vyo_A 175 PKHHSFIILMHDGQEADTSRLENMVKIGKDKGYRFVNMDE 214 (254)
T ss_dssp TTTCCEEEEEEGGGGSSCHHHHHHHHHHHHHTCEECCHHH
T ss_pred ccCCCcEEEEeCCchhHHHHHHHHHHHHHHCCCEEEEchH
Confidence 2 02222 132211256777788888889999887665
No 51
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=34.44 E-value=1.5e+02 Score=22.43 Aligned_cols=96 Identities=11% Similarity=0.065 Sum_probs=54.1
Q ss_pred EEEEeCCCC-CcccHHHHHHHHHHHH--hhCCCCceEEecccc--cCHHHHHHHHhc-CcEE-ecCCcccccccc-ccCC
Q 026546 26 KVKLAESYG-FCWGVERAVQIAYEAR--KQFPEEKIWITNEII--HNPTVNKRLEEM-AVQN-IPVEEGKKQFDV-VNKG 97 (237)
Q Consensus 26 ~I~lA~~~G-FC~GV~RAv~~a~~a~--~~~~~~~vy~lgeiI--HN~~Vv~~L~~~-Gv~~-v~~~~~~~~~~~-v~~g 97 (237)
.|+.....+ .-.|+...++.+.... +++++-.+.+.|.-- ..+.+.+.+++. .|.+ ....+. +++.+ +..-
T Consensus 38 ~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~~v~~~~g~~~~-~~~~~~~~~a 116 (200)
T 2bfw_A 38 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR-EFVRELYGSV 116 (200)
T ss_dssp EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCTTEEEECSCCCH-HHHHHHHTTC
T ss_pred EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcCCEEEEeccCCH-HHHHHHHHHC
Confidence 566666667 7789999999888876 555444688888732 223444444445 4666 443211 01111 2335
Q ss_pred CEEEEcCC--CCCHHHHHHHHhcCCcEE
Q 026546 98 DVVVLPAF--GAAVEEMVTLNNKNVQIV 123 (237)
Q Consensus 98 ~~VIirAH--Gv~~~v~~~l~~~g~~iv 123 (237)
|.+|+++. |.+-.+.+.+ ..|+.||
T Consensus 117 d~~l~ps~~e~~~~~~~Ea~-a~G~PvI 143 (200)
T 2bfw_A 117 DFVIIPSYFEPFGLVALEAM-CLGAIPI 143 (200)
T ss_dssp SEEEECCSCCSSCHHHHHHH-HTTCEEE
T ss_pred CEEEECCCCCCccHHHHHHH-HCCCCEE
Confidence 77777764 3344444433 4455555
No 52
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=33.56 E-value=1.7e+02 Score=22.81 Aligned_cols=97 Identities=9% Similarity=-0.068 Sum_probs=59.7
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCCeEE
Q 026546 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (237)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~-ivDaTCP~V~kv~~~v~~~~~~Gy~iv 148 (237)
.++.|+++|+.+.= + .+ +-.......++..|+. +++...|--.-+....+++.-....++
T Consensus 54 ~l~~L~~~g~~~~i----------~-T~--------~~~~~~~~~~~~lgl~~~f~~~~~K~~~~~~~~~~~g~~~~~~~ 114 (189)
T 3mn1_A 54 GIKMLIASGVTTAI----------I-SG--------RKTAIVERRAKSLGIEHLFQGREDKLVVLDKLLAELQLGYEQVA 114 (189)
T ss_dssp HHHHHHHTTCEEEE----------E-CS--------SCCHHHHHHHHHHTCSEEECSCSCHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE----------E-EC--------cChHHHHHHHHHcCCHHHhcCcCChHHHHHHHHHHcCCChhHEE
Confidence 78899999986541 0 11 2345667777778885 566666656666666677766678899
Q ss_pred EEecCCCcceeeeccccCeeEEE-cChhhHHhhhhhhcCC
Q 026546 149 IHGKYSHEETVATASFAGKYIIV-KNMKEAEYVCDYILGG 187 (237)
Q Consensus 149 IiG~~~HpEv~g~~g~a~~~~vv-~~~~e~~~~~~~~~~~ 187 (237)
.+||..+- +.+.. .++-.+.+ ...+++...++|++..
T Consensus 115 ~vGD~~nD-i~~~~-~ag~~~~~~~~~~~~~~~ad~v~~~ 152 (189)
T 3mn1_A 115 YLGDDLPD-LPVIR-RVGLGMAVANAASFVREHAHGITRA 152 (189)
T ss_dssp EEECSGGG-HHHHH-HSSEEEECTTSCHHHHHTSSEECSS
T ss_pred EECCCHHH-HHHHH-HCCCeEEeCCccHHHHHhCCEEecC
Confidence 99998642 22211 23333344 3445666677777654
No 53
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=33.36 E-value=32 Score=31.41 Aligned_cols=90 Identities=22% Similarity=0.415 Sum_probs=49.9
Q ss_pred hHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhh---CCCCceEEecccc-------------cCHHHH
Q 026546 8 DIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQ---FPEEKIWITNEII-------------HNPTVN 71 (237)
Q Consensus 8 ~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~---~~~~~vy~lgeiI-------------HN~~Vv 71 (237)
.+++.+++. +..|+ +|++.- |-+-|+-++.+.+.+- .++-|||+.+++. .|+.+.
T Consensus 203 ~l~~~i~~~---~~~gg-~vlIp~-----fa~gR~qell~~l~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~ 273 (431)
T 3iek_A 203 EFLEILEKT---LSQGG-KVLIPT-----FAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQ 273 (431)
T ss_dssp HHHHHHHHH---HHTTC-EEEEEC-----CTTTHHHHHHHHHHHHGGGSCCCCEEEECHHHHHHHHHGGGGGGGSCHHHH
T ss_pred HHHHHHHHH---HHcCC-eEEEEe-----ccchHHHHHHHHHHHHHHhccCCCEEEeChHHHHHHHHHHHhHHHHHHHHH
Confidence 344444442 33343 455553 3377888887655442 3456899999776 355555
Q ss_pred HHHHh-------cCcEEecCCccccccccccCCCEEEEcCCCC
Q 026546 72 KRLEE-------MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGA 107 (237)
Q Consensus 72 ~~L~~-------~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv 107 (237)
+.++. ..++++++.++.+.+.+. ++..|||.++|-
T Consensus 274 ~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~-~~p~viia~~gm 315 (431)
T 3iek_A 274 AHFLQGKNPFRPAGLEVVEHTEASKALNRA-PGPMVVLAGSGM 315 (431)
T ss_dssp HHHHTTSCTTCCTTEEECCSHHHHHHHHHS-CSSEEEEESCTT
T ss_pred HHHhcCCCCCCCCCeEEeCCHHHHHHHhcC-CCCeEEEecCCC
Confidence 55543 345666542221122222 356788999873
No 54
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=32.73 E-value=1e+02 Score=22.90 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=47.0
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccc-CeeEEEcC
Q 026546 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIVKN 173 (237)
Q Consensus 97 g~~VIirAHGv~~~v~~~l~~~g~~i--vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a-~~~~vv~~ 173 (237)
+.++|+-+=-+...+.+.|.+.|..| ||.. ...++++.+.|+. +++|+...|++..-.+-. -+.+|+..
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~-------~~~~~~~~~~g~~-~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETS-------RTRVDELRERGVR-AVLGNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESC-------HHHHHHHHHTTCE-EEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHcCCC-EEECCCCCHHHHHhcCcccCCEEEEEC
Confidence 56778877556888999999998876 6765 2345556667886 588999999875443322 23455433
No 55
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=32.43 E-value=86 Score=26.12 Aligned_cols=52 Identities=8% Similarity=0.248 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCC
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~ 120 (237)
..+.+.|++.|+.++.-..-.+..+.+.+-|.|+|+= |-+...++.|++.|+
T Consensus 51 ~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpG-G~~~~~~~~l~~~gl 102 (229)
T 1fy2_A 51 DKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGG-GNTFQLLKESRERGL 102 (229)
T ss_dssp HHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECC-SCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECC-CcHHHHHHHHHHCCh
Confidence 4467788889976543210001124455567899999 999999999999875
No 56
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=32.10 E-value=1.2e+02 Score=28.52 Aligned_cols=92 Identities=14% Similarity=0.195 Sum_probs=48.5
Q ss_pred cceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccC-C
Q 026546 19 EYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-G 97 (237)
Q Consensus 19 ~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~-g 97 (237)
.|.|..++|.+- |.| |.=.+ -+|.-+.+. + -.|...-. =-++...+.|++.|+.+...- +.+.+.. -
T Consensus 14 ~~~~~~~~i~~i---GiG-g~Gms-~lA~~l~~~-G-~~V~~sD~-~~~~~~~~~L~~~gi~~~~G~----~~~~~~~~~ 81 (524)
T 3hn7_A 14 NLYFQGMHIHIL---GIC-GTFMG-SLALLARAL-G-HTVTGSDA-NIYPPMSTQLEQAGVTIEEGY----LIAHLQPAP 81 (524)
T ss_dssp -----CCEEEEE---TTT-SHHHH-HHHHHHHHT-T-CEEEEEES-CCCTTHHHHHHHTTCEEEESC----CGGGGCSCC
T ss_pred ceeecCCEEEEE---Eec-HhhHH-HHHHHHHhC-C-CEEEEECC-CCCcHHHHHHHHCCCEEECCC----CHHHcCCCC
Confidence 356677787766 333 22221 123323332 2 34554332 123556789999999987531 2234433 3
Q ss_pred CEEEEcCCCCCH--HHHHHHHhcCCcEE
Q 026546 98 DVVVLPAFGAAV--EEMVTLNNKNVQIV 123 (237)
Q Consensus 98 ~~VIirAHGv~~--~v~~~l~~~g~~iv 123 (237)
|.||+ +=|+|+ .+.++++++|+.|+
T Consensus 82 d~vV~-Spgi~~~~p~l~~a~~~gi~v~ 108 (524)
T 3hn7_A 82 DLVVV-GNAMKRGMDVIEYMLDTGLRYT 108 (524)
T ss_dssp SEEEE-CTTCCTTSHHHHHHHHHTCCEE
T ss_pred CEEEE-CCCcCCCCHHHHHHHHCCCcEE
Confidence 65554 457875 45678889999986
No 57
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=31.74 E-value=1.2e+02 Score=26.54 Aligned_cols=90 Identities=9% Similarity=-0.039 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHhcCcEEecCCcccc-------------------ccccccC
Q 026546 38 GVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEGKK-------------------QFDVVNK 96 (237)
Q Consensus 38 GV~RAv~~a~~a~~~~~-~~~vy~lgeiI-HN~~Vv~~L~~~Gv~~v~~~~~~~-------------------~~~~v~~ 96 (237)
|-+..+....+++++++ ....|+.|..+ .||.++++|.+.|-.+-...-.-. .+.++..
T Consensus 71 G~~~~~~rlL~lL~~~~v~aTfFv~g~~~~~~p~~v~~i~~~GhEIg~H~~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G 150 (326)
T 3qbu_A 71 AGEVGIPRLLKLFKKYHLPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPIAMSTKQEEDVLLKSVELIKDLTG 150 (326)
T ss_dssp HHHTHHHHHHHHHHHTTCCCEEECCHHHHHHCHHHHHHHHTTTCEEEBCCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CcHHhHHHHHHHHHHcCCCEEEEEEhHHhhhCHHHHHHHHHcCCEEEeCCCCCcChhhCCHHHHHHHHHHHHHHHHHHHC
Confidence 44445555555666654 23688988877 699999999999986653211100 1222222
Q ss_pred CCEEEEcCC--CCCHHHHHHHHhcCCcEEeCcCh
Q 026546 97 GDVVVLPAF--GAAVEEMVTLNNKNVQIVDTTCP 128 (237)
Q Consensus 97 g~~VIirAH--Gv~~~v~~~l~~~g~~ivDaTCP 128 (237)
.....+|+. ..++...+.|++.|+.. |+++.
T Consensus 151 ~~p~~fr~P~g~~~~~~~~~l~e~G~~y-dss~~ 183 (326)
T 3qbu_A 151 KAPTGYVAPWWEFSNITNELLLKHGFKY-DHSLM 183 (326)
T ss_dssp SCCCEECCGGGCCSSHHHHHHHTTTCCE-ECCCC
T ss_pred CCCcEEECCCCCCCHHHHHHHHHcCCEE-Eeecc
Confidence 234567765 56788999999999875 77653
No 58
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=31.43 E-value=1.3e+02 Score=25.83 Aligned_cols=81 Identities=10% Similarity=0.022 Sum_probs=45.1
Q ss_pred CceEEecccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHHH--------hcCCcEEeCc
Q 026546 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTLN--------NKNVQIVDTT 126 (237)
Q Consensus 56 ~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v-~~g~~VIirAHGv~~~v~~~l~--------~~g~~ivDaT 126 (237)
-+|++.. .|+...++|.+.|+.+..+ ++++ .+-|+||+ +=..+..+.+.+. ..|..|||.+
T Consensus 55 ~~V~~~d---r~~~~~~~l~~~g~~~~~~------~~e~~~~aDvVi~-~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~s 124 (320)
T 4dll_A 55 YALQVWN---RTPARAASLAALGATIHEQ------ARAAARDADIVVS-MLENGAVVQDVLFAQGVAAAMKPGSLFLDMA 124 (320)
T ss_dssp CEEEEEC---SCHHHHHHHHTTTCEEESS------HHHHHTTCSEEEE-CCSSHHHHHHHHTTTCHHHHCCTTCEEEECS
T ss_pred CeEEEEc---CCHHHHHHHHHCCCEeeCC------HHHHHhcCCEEEE-ECCCHHHHHHHHcchhHHhhCCCCCEEEecC
Confidence 3677765 5888999999999988754 3333 23454443 3232333333221 3566677766
Q ss_pred ChhhHHHHHHHHHHhhCCCe
Q 026546 127 CPWVSKVWTSVEKHKKGDYT 146 (237)
Q Consensus 127 CP~V~kv~~~v~~~~~~Gy~ 146 (237)
=-.........+.+.+.|..
T Consensus 125 t~~~~~~~~~~~~~~~~g~~ 144 (320)
T 4dll_A 125 SITPREARDHAARLGALGIA 144 (320)
T ss_dssp CCCHHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHcCCE
Confidence 54444445555555555543
No 59
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=31.10 E-value=1.9e+02 Score=22.67 Aligned_cols=78 Identities=8% Similarity=-0.086 Sum_probs=51.0
Q ss_pred CCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccCeeEEE-cChhhHHhhhhhh
Q 026546 107 AAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIV-KNMKEAEYVCDYI 184 (237)
Q Consensus 107 v~~~v~~~l~~~g~~-ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~~~~vv-~~~~e~~~~~~~~ 184 (237)
-...+...++..|+. ++|...|--.-+...++++.-..-+++.+||.. --+.+.. .++-.+.+ ...+++...++|+
T Consensus 72 ~~~~~~~~l~~lgl~~~~~~~kpk~~~~~~~~~~~~~~~~~~~~vGD~~-~Di~~~~-~ag~~~~~~~~~~~~~~~ad~v 149 (191)
T 3n1u_A 72 QNAVVDHRMEQLGITHYYKGQVDKRSAYQHLKKTLGLNDDEFAYIGDDL-PDLPLIQ-QVGLGVAVSNAVPQVLEFADWR 149 (191)
T ss_dssp CSHHHHHHHHHHTCCEEECSCSSCHHHHHHHHHHHTCCGGGEEEEECSG-GGHHHHH-HSSEEEECTTCCHHHHHHSSEE
T ss_pred ChHHHHHHHHHcCCccceeCCCChHHHHHHHHHHhCCCHHHEEEECCCH-HHHHHHH-HCCCEEEeCCccHHHHHhCCEE
Confidence 356777788888886 477778888888888888877778899999876 3333322 12222233 3334555556666
Q ss_pred cC
Q 026546 185 LG 186 (237)
Q Consensus 185 ~~ 186 (237)
+.
T Consensus 150 ~~ 151 (191)
T 3n1u_A 150 TE 151 (191)
T ss_dssp CS
T ss_pred ec
Confidence 54
No 60
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=30.93 E-value=1.4e+02 Score=24.05 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=22.6
Q ss_pred CceEEecccccCHHHHHHHHhcC--cEEecC
Q 026546 56 EKIWITNEIIHNPTVNKRLEEMA--VQNIPV 84 (237)
Q Consensus 56 ~~vy~lgeiIHN~~Vv~~L~~~G--v~~v~~ 84 (237)
..|+.+|+|++ +.+.+.|++.+ +.+|..
T Consensus 57 D~vi~~GDl~~-~~~l~~l~~~~~~v~~V~G 86 (215)
T 2a22_A 57 NYVLCTGNVCS-QEYVEMLKNITKNVYIVSG 86 (215)
T ss_dssp CEEEECSCCCC-HHHHHHHHHHCSCEEECCC
T ss_pred CEEEECCCCCC-HHHHHHHHHcCCCEEEecC
Confidence 47999999996 78899999987 556654
No 61
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=30.58 E-value=1.4e+02 Score=24.96 Aligned_cols=80 Identities=9% Similarity=-0.023 Sum_probs=43.1
Q ss_pred ceEEecccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH---------HhcCCcEEeCc
Q 026546 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL---------NNKNVQIVDTT 126 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v-~~g~~VIirAHGv~~~v~~~l---------~~~g~~ivDaT 126 (237)
+|++.. .|+.-.+.|.+.|+.+.++ +.++ .+-|+||+ +=..++.+.+.+ -..|..|||++
T Consensus 26 ~V~~~d---r~~~~~~~~~~~g~~~~~~------~~~~~~~advvi~-~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~s 95 (287)
T 3pdu_A 26 DVTVWN---RNPAKCAPLVALGARQASS------PAEVCAACDITIA-MLADPAAAREVCFGANGVLEGIGGGRGYIDMS 95 (287)
T ss_dssp CEEEEC---SSGGGGHHHHHHTCEECSC------HHHHHHHCSEEEE-CCSSHHHHHHHHHSTTCGGGTCCTTCEEEECS
T ss_pred eEEEEc---CCHHHHHHHHHCCCeecCC------HHHHHHcCCEEEE-EcCCHHHHHHHHcCchhhhhcccCCCEEEECC
Confidence 577664 5788888898889887653 2332 22343333 323333333333 12456667766
Q ss_pred ChhhHHHHHHHHHHhhCCCe
Q 026546 127 CPWVSKVWTSVEKHKKGDYT 146 (237)
Q Consensus 127 CP~V~kv~~~v~~~~~~Gy~ 146 (237)
--.........+.+.+.|..
T Consensus 96 t~~~~~~~~~~~~~~~~g~~ 115 (287)
T 3pdu_A 96 TVDDETSTAIGAAVTARGGR 115 (287)
T ss_dssp CCCHHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHcCCE
Confidence 55444444444555555544
No 62
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=30.28 E-value=44 Score=29.88 Aligned_cols=57 Identities=5% Similarity=0.093 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCH-------------HHHHHHH--hcCCcEEeC
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV-------------EEMVTLN--NKNVQIVDT 125 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~-------------~v~~~l~--~~g~~ivDa 125 (237)
+.+.+.|+++|+.++.- +-...+.+..+-|.||.+.||... +...++. ..|+.++|-
T Consensus 36 ~~l~~al~~~G~~~~~i-D~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vinp 107 (346)
T 2q7d_A 36 QAFAELCRKRGMEVVQL-NLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDP 107 (346)
T ss_dssp HHHHHHHHTTTCEEEEC-CTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEESC
T ss_pred HHHHHHHHhCCcEEEEc-ccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEcCC
Confidence 46889999999987642 111122222345889999999533 2233332 248888884
No 63
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=30.04 E-value=81 Score=30.07 Aligned_cols=110 Identities=9% Similarity=0.088 Sum_probs=59.0
Q ss_pred CCCCceEEecccccCHHHHHHHHhcCcEEecCC---cccccccc---ccC-----C-----------CEEEEcCCCCCHH
Q 026546 53 FPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE---EGKKQFDV---VNK-----G-----------DVVVLPAFGAAVE 110 (237)
Q Consensus 53 ~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~---~~~~~~~~---v~~-----g-----------~~VIirAHGv~~~ 110 (237)
..++++++.|.=-|--.+..-|.++|+.++--. ...++++. +|. + +.-=+| =-.+++
T Consensus 333 l~GKrv~i~~~~~~~~~l~~~l~ElGm~vv~~~t~~~~~~~~~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~e 411 (533)
T 1mio_A 333 LQGKTACLYVGGSRSHTYMNMLKSFGVDSLVAGFEFAHRDDYEGREVIPTIKIDADSKNIPEITVTPDEQKYR-VVIPED 411 (533)
T ss_dssp HTTCEEEEEESSSHHHHHHHHHHHHTCEEEEEEESSCCHHHHHCGGGTTTCCCCSSCCCCCCCCCCCCSSSCC-CSSCTH
T ss_pred hCCCEEEEECCchHHHHHHHHHHHCCCEEEEEEeccCcchhhhhhccCcccccccccccccccccccchhhhc-ccccHH
Confidence 345788888776777788889999999876421 00011111 010 0 000011 124557
Q ss_pred HHHHHHhcCCcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccCeeEEEcChhh
Q 026546 111 EMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKE 176 (237)
Q Consensus 111 v~~~l~~~g~~i--vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~~~e 176 (237)
.++.|+++|+.+ ++.+||.. +...+|+++.+|.|+.-..-....-+++.+..+
T Consensus 412 ~~~~l~~~g~~~~~y~~~~~~~-------------~~~~~i~~d~d~~el~~~i~~~~pDl~ig~~~~ 466 (533)
T 1mio_A 412 KVEELKKAGVPLSSYGGMMKEM-------------HDGTILIDDMNHHDMEVVLEKLKPDMFFAGIKE 466 (533)
T ss_dssp HHHHHHGGGCCBTCCCCGGGTS-------------CTTEEEEESCBHHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHhcccccccccchhhcc-------------CCCcEEEeCCCHHHHHHHHHhcCCCEEEcccch
Confidence 888888887654 44454432 334667777777776554433333344444443
No 64
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=29.54 E-value=71 Score=27.33 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=21.3
Q ss_pred CCHHHHHHHHhcCCcEEeCcChh
Q 026546 107 AAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 107 v~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
.+++.+++|+++|.+|+=+|=+|
T Consensus 93 ~~~e~~~~L~~~G~~V~t~tH~l 115 (206)
T 1t57_A 93 LEDEARDALLERGVNVYAGSHAL 115 (206)
T ss_dssp SCHHHHHHHHHHTCEEECCSCTT
T ss_pred CCHHHHHHHHhCCCEEEEeeccc
Confidence 47999999999999999999887
No 65
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=29.17 E-value=52 Score=25.35 Aligned_cols=29 Identities=17% Similarity=0.042 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHH
Q 026546 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKV 133 (237)
Q Consensus 105 HGv~~~v~~~l~~~g~~ivDaTCP~V~kv 133 (237)
-+...+..+.++++|++++|--|+-+...
T Consensus 102 ~~~~~~l~~~a~~~Gi~~igpnc~g~~~~ 130 (138)
T 1y81_A 102 GAESEEIRRFLEKAGVEYSFGRCIMVETS 130 (138)
T ss_dssp TSCCHHHHHHHHHHTCEEECSCCHHHHC-
T ss_pred ccHHHHHHHHHHHCCCEEEcCCcceEEcc
Confidence 34567777777777888887777766543
No 66
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=29.11 E-value=1.1e+02 Score=26.33 Aligned_cols=101 Identities=17% Similarity=0.093 Sum_probs=57.3
Q ss_pred HHHHHHHhhCCCCceEEec----ccccCH----HHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 026546 44 QIAYEARKQFPEEKIWITN----EIIHNP----TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (237)
Q Consensus 44 ~~a~~a~~~~~~~~vy~lg----eiIHN~----~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l 115 (237)
.....++...|. -+.+.+ -+-=|+ .|++.|+++|+-|+|+.. .+. - ...+.+
T Consensus 87 ~~l~~al~~vP~-a~GvnNHmGS~~T~~~~~m~~vm~~l~~~gL~fvDS~T---------s~~-------S---~a~~~A 146 (245)
T 2nly_A 87 SRVRKAFDDIPY-AVGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGT---------SPH-------S---LIPQLA 146 (245)
T ss_dssp HHHHHHHHHSTT-CCEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEECCC---------CSS-------C---SHHHHH
T ss_pred HHHHHHHHHCCC-cEEEecccccchhcCHHHHHHHHHHHHHCCCEEEcCCC---------Ccc-------c---HHHHHH
Confidence 334556666663 344432 334455 577889999999998621 111 1 133445
Q ss_pred HhcCCcE------EeC---cChhhHHHHHHHHHHhhCCCeEEEEecCCCcc---ee-eecccc
Q 026546 116 NNKNVQI------VDT---TCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE---TV-ATASFA 165 (237)
Q Consensus 116 ~~~g~~i------vDa---TCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpE---v~-g~~g~a 165 (237)
++.|+.. +|. +=..+.+-.+++.+++++--..|.||++. |+ |+ ++..|.
T Consensus 147 ~~~gvp~~~rdvFLD~~~~~~~~I~~ql~~a~~~A~~~G~aIaIGhp~-p~~~~Ti~aL~~~~ 208 (245)
T 2nly_A 147 EELEVPYATRSIFLDNTHSSRKEVIKNMRKLAKKAKQGSEPIGIGHVG-VRGDETYAGIRSML 208 (245)
T ss_dssp HHTTCCEEECCEESCCTTCCHHHHHHHHHHHHHHHHTTSCCEEEEECS-TTHHHHHHHHGGGH
T ss_pred HHcCCCeEEeeEECCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEECCC-CCchhHHHHHHHHh
Confidence 5666553 566 33455555566666666645677799864 54 44 444454
No 67
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=29.02 E-value=70 Score=28.57 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=40.8
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 026546 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (237)
Q Consensus 35 FC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~ 83 (237)
|--+|.+|++.+.++.+.. +.++-+.|++--+|.....|..+|+.++.
T Consensus 228 ~~p~v~~ai~~vv~aar~a-G~~vgvcge~~~dp~~~~~l~~lG~~~~s 275 (324)
T 2xz9_A 228 FHPAILRLVKMVIDAAHKE-GKFAAMCGEMAGDPLAAVILLGLGLDEFS 275 (324)
T ss_dssp TCHHHHHHHHHHHHHHHHT-TCEEEECSGGGGCHHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHH-CCceeecCccCCCHHHHHHHHHCCCCEEE
Confidence 3467999999998888766 47888889998899999999999998764
No 68
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=28.85 E-value=1.9e+02 Score=23.47 Aligned_cols=112 Identities=9% Similarity=-0.044 Sum_probs=70.0
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCCeEE
Q 026546 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (237)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~-ivDaTCP~V~kv~~~v~~~~~~Gy~iv 148 (237)
.++.|+++|+.+.= + .++ -...+...+++.|+. +++...|-..-+....+++.-...+++
T Consensus 84 ~L~~L~~~G~~l~I----------~-T~~--------~~~~~~~~l~~lgi~~~f~~~k~K~~~l~~~~~~lg~~~~~~~ 144 (211)
T 3ij5_A 84 GIRCLITSDIDVAI----------I-TGR--------RAKLLEDRANTLGITHLYQGQSDKLVAYHELLATLQCQPEQVA 144 (211)
T ss_dssp HHHHHHHTTCEEEE----------E-CSS--------CCHHHHHHHHHHTCCEEECSCSSHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE----------E-eCC--------CHHHHHHHHHHcCCchhhcccCChHHHHHHHHHHcCcCcceEE
Confidence 78899999987541 0 111 244566677777885 678888888888888888877788999
Q ss_pred EEecCCCcceeeeccccCeeEEE-cChhhHHhhhhhhcCCccCCCCchHHHHHHHHH
Q 026546 149 IHGKYSHEETVATASFAGKYIIV-KNMKEAEYVCDYILGGELNGSSSTKEAFLEKFK 204 (237)
Q Consensus 149 IiG~~~HpEv~g~~g~a~~~~vv-~~~~e~~~~~~~~~~~q~~~~~~~~~~f~~~f~ 204 (237)
.+||..+----+ -.++-.+.+ ...+++...++|++.. .+..+-..++.+.+-
T Consensus 145 ~vGDs~nDi~~~--~~ag~~~a~~~~~~~~~~~Ad~v~~~--~~~~G~v~e~~~~ll 197 (211)
T 3ij5_A 145 YIGDDLIDWPVM--AQVGLSVAVADAHPLLLPKAHYVTRI--KGGRGAVREVCDLIL 197 (211)
T ss_dssp EEECSGGGHHHH--TTSSEEEECTTSCTTTGGGSSEECSS--CTTTTHHHHHHHHHH
T ss_pred EEcCCHHHHHHH--HHCCCEEEeCCccHHHHhhCCEEEeC--CCCCcHHHHHHHHHH
Confidence 999987532211 122323344 3344566678888764 112233455665553
No 69
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=28.54 E-value=59 Score=28.13 Aligned_cols=70 Identities=7% Similarity=-0.000 Sum_probs=44.9
Q ss_pred cccccCCCEEEEcC-CCCCHHHHHHHHhcCCcEEeC---cChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeee
Q 026546 91 FDVVNKGDVVVLPA-FGAAVEEMVTLNNKNVQIVDT---TCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT 161 (237)
Q Consensus 91 ~~~v~~g~~VIirA-HGv~~~v~~~l~~~g~~ivDa---TCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~ 161 (237)
+.+.++-|.|++-. +....+....+.+.|..|+|. ++|.+....+..+...+.|- ++++|...+|.+..+
T Consensus 60 l~~~~~~DvViiatp~~~h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~-~~~v~~~~~p~~~~~ 133 (304)
T 3bio_A 60 IEQLESVDVALVCSPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGA-AAVIASGWDPGSDSV 133 (304)
T ss_dssp GGGSSSCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTC-EEECSCBBTTBHHHH
T ss_pred HHhCCCCCEEEECCCchhhHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCC-EEEEeCCCCHHHHHH
Confidence 33444456666544 455567777888999999997 35666666666665555554 667787666665443
No 70
>3fpn_A Geobacillus stearothermophilus UVRA interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=28.32 E-value=48 Score=25.60 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=29.0
Q ss_pred HHHHHHHhhCCCCceEEecccccCH-----HHHHHHHhcCcEEe
Q 026546 44 QIAYEARKQFPEEKIWITNEIIHNP-----TVNKRLEEMAVQNI 82 (237)
Q Consensus 44 ~~a~~a~~~~~~~~vy~lgeiIHN~-----~Vv~~L~~~Gv~~v 82 (237)
+|+...+....+.+++++-|+|-++ ...+.|+++|..=+
T Consensus 8 qivd~il~~~egtri~iLAPvv~~rKg~~~~ll~~l~~~Gf~Rv 51 (119)
T 3fpn_A 8 QMVDRLLSYPERTKMQILAPIVSGKKGTHAKTLEDIRKQGYVRV 51 (119)
T ss_dssp HHHHHHHTSCTTCEEEEEEEEEEEECSCCHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhCCCCCEEEEEEEEeeCCCCcHHHHHHHHHhCCCeEE
Confidence 3555555544456899999999765 78899999997644
No 71
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=28.23 E-value=2.8e+02 Score=23.63 Aligned_cols=40 Identities=13% Similarity=-0.060 Sum_probs=26.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEE
Q 026546 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (237)
Q Consensus 100 VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~iv 148 (237)
+.++..+.++++++.+...+ -..++.+.++.+.+.|+.+-
T Consensus 156 v~i~let~~~~~~~~i~~~~---------~~~~~~~~i~~~~~~Gi~v~ 195 (348)
T 3iix_A 156 YLLRHETANPVLHRKLRPDT---------SFENRLNCLLTLKELGYETG 195 (348)
T ss_dssp EECCCBCSCHHHHHHHSTTS---------CHHHHHHHHHHHHHTTCEEE
T ss_pred EeeeeeeCCHHHHHHhCCCc---------CHHHHHHHHHHHHHhCCeec
Confidence 44666777788887775432 34566666777778888764
No 72
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=27.80 E-value=1.9e+02 Score=27.49 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=63.5
Q ss_pred ceEEEEeCCCCCcc-----cHHHHHHHHHHHHhh-C---C-CCceEEecc--cccC-HHHHHHHHhcCcEEecCCcc---
Q 026546 24 NVKVKLAESYGFCW-----GVERAVQIAYEARKQ-F---P-EEKIWITNE--IIHN-PTVNKRLEEMAVQNIPVEEG--- 87 (237)
Q Consensus 24 ~m~I~lA~~~GFC~-----GV~RAv~~a~~a~~~-~---~-~~~vy~lge--iIHN-~~Vv~~L~~~Gv~~v~~~~~--- 87 (237)
+..|+.+..-||.- |-..|++...+.+-. . + ...|-++|+ +-++ .++..-|+++|+.++-...+
T Consensus 165 ~~pVi~v~tpGf~g~s~~~G~~~a~~al~~~~~~~~~~~~~~~~VNIlG~~~~~gD~~eikrlL~~~Gi~v~~~~~gg~t 244 (533)
T 1mio_A 165 GIPVHAFSCEGYKGVSQSAGHHIANNTVMTDIIGKGNKEQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNATLTGDAT 244 (533)
T ss_dssp SSCEEECCCCTTSSSSTHHHHHHHHHHHHHHTTBCCCCCCCTTEEEEEEECCBTSHHHHHHHHHHHHTCEEEEEEETTCC
T ss_pred CCcEEEEeCCCCcCcchhHHHHHHHHHHHHHhcccccCCCCCCeEEEEcCCCChhhHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 47799999999985 777887666554321 1 1 235889887 3344 45566669999987643222
Q ss_pred ccccccccCCCEEEEcCCCCCHHHHHHHHhc-CCcEEeCcChh
Q 026546 88 KKQFDVVNKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPW 129 (237)
Q Consensus 88 ~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~-g~~ivDaTCP~ 129 (237)
.+++..++.....|.-.|-.....-+.|+++ |+..+... |+
T Consensus 245 ~~ei~~~~~A~~niv~~~~~~~~~A~~Leer~GiP~i~~~-pi 286 (533)
T 1mio_A 245 YEKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCN-FI 286 (533)
T ss_dssp HHHHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECC-CS
T ss_pred HHHHHhhhcCCEEEEECHHHHHHHHHHHHHHhCCCeEEec-CC
Confidence 2334444444434433333344556677665 89998874 65
No 73
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=27.71 E-value=1.3e+02 Score=23.26 Aligned_cols=41 Identities=7% Similarity=0.161 Sum_probs=30.9
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeE
Q 026546 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (237)
Q Consensus 97 g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~i 147 (237)
-|.|.|+-+|.+++.++.+... ++ .++.+-++.+.+.|..+
T Consensus 55 ~d~v~isld~~~~~~~~~~~g~---------~~-~~i~~~i~~l~~~g~~v 95 (182)
T 3can_A 55 CELLLIDLKSMDSTVHQTFCDV---------PN-ELILKNIRRVAEADFPY 95 (182)
T ss_dssp CSEEEEECCCSCHHHHHHHHSS---------CS-HHHHHHHHHHHHTTCCE
T ss_pred CCEEEEECCCCCHHHHHHHhCC---------CH-HHHHHHHHHHHhCCCeE
Confidence 4678999999999999888632 22 77888888888777543
No 74
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=27.28 E-value=1.9e+02 Score=27.40 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=29.0
Q ss_pred EEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCc
Q 026546 26 KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV 79 (237)
Q Consensus 26 ~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv 79 (237)
+|+++- |-..+.|+-++.+.+.+ + +++||+.|.-..| +++-.++.|.
T Consensus 225 rvii~~---fasnv~R~q~il~~a~~-~-gr~v~v~grs~~~--~~~~~~~~g~ 271 (555)
T 3zq4_A 225 RIIFAT---FASNIHRLQQVIEAAVQ-N-GRKVAVFGRSMES--AIEIGQTLGY 271 (555)
T ss_dssp CEEEEC---CTTCHHHHHHHHHHHHT-T-TCEEEEESHHHHH--HHHHHHGGGS
T ss_pred EEEEEE---ChhHHHHHHHHHHHHHH-H-CCEEEEeCHHHHH--HHHHHHHcCC
Confidence 566662 44449998887776655 4 3689999954433 3333445553
No 75
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=27.24 E-value=1.5e+02 Score=22.45 Aligned_cols=59 Identities=5% Similarity=-0.081 Sum_probs=38.6
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeeccccCeeEEEcChhhHHhhhhhhcCC
Q 026546 127 CPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGG 187 (237)
Q Consensus 127 CP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpEv~g~~g~a~~~~vv~~~~e~~~~~~~~~~~ 187 (237)
.|-..-+....+++.-.-..++.+||.. .-+.+.. .++-.+++...++++..++|++.+
T Consensus 141 k~k~~~~~~~~~~~g~~~~~~i~vGDs~-~Di~~a~-~aG~~~~~~~~~~l~~~ad~v~~~ 199 (217)
T 3m1y_A 141 HSKGEMLLVLQRLLNISKTNTLVVGDGA-NDLSMFK-HAHIKIAFNAKEVLKQHATHCINE 199 (217)
T ss_dssp THHHHHHHHHHHHHTCCSTTEEEEECSG-GGHHHHT-TCSEEEEESCCHHHHTTCSEEECS
T ss_pred CChHHHHHHHHHHcCCCHhHEEEEeCCH-HHHHHHH-HCCCeEEECccHHHHHhcceeecc
Confidence 4666666666677665667899999975 2333332 345445557777888888888764
No 76
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=26.88 E-value=1.9e+02 Score=24.15 Aligned_cols=80 Identities=6% Similarity=-0.045 Sum_probs=42.1
Q ss_pred ceEEecccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHHH---------hcCCcEEeCc
Q 026546 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTLN---------NKNVQIVDTT 126 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v-~~g~~VIirAHGv~~~v~~~l~---------~~g~~ivDaT 126 (237)
+|++.. .|+...++|.+.|+.+..+ +.++ .+-|+||+ +=..+..+.+.+. ..|..|||.+
T Consensus 28 ~V~~~d---~~~~~~~~~~~~g~~~~~~------~~~~~~~aDvvi~-~vp~~~~~~~v~~~~~~~~~~l~~~~~vi~~s 97 (302)
T 2h78_A 28 LLNVFD---LVQSAVDGLVAAGASAARS------ARDAVQGADVVIS-MLPASQHVEGLYLDDDGLLAHIAPGTLVLECS 97 (302)
T ss_dssp EEEEEC---SSHHHHHHHHHTTCEECSS------HHHHHTTCSEEEE-CCSCHHHHHHHHHSSSCGGGSSCSSCEEEECS
T ss_pred eEEEEc---CCHHHHHHHHHCCCeEcCC------HHHHHhCCCeEEE-ECCCHHHHHHHHcCchhHHhcCCCCcEEEECC
Confidence 576664 5888899999999987754 3332 33454444 3222333333332 2466777743
Q ss_pred ChhhHHHHHHHHHHhhCCCe
Q 026546 127 CPWVSKVWTSVEKHKKGDYT 146 (237)
Q Consensus 127 CP~V~kv~~~v~~~~~~Gy~ 146 (237)
--.........+.+.+.|..
T Consensus 98 t~~~~~~~~l~~~~~~~g~~ 117 (302)
T 2h78_A 98 TIAPTSARKIHAAARERGLA 117 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCE
Confidence 32223333333444444544
No 77
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=26.59 E-value=1.3e+02 Score=20.22 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCC--CCHHHHHH-HHhcCCc
Q 026546 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG--AAVEEMVT-LNNKNVQ 121 (237)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHG--v~~~v~~~-l~~~g~~ 121 (237)
.+++..|++.|..++....+-.-+- -+.+..|.||-|+ +++-.... +++.|+.
T Consensus 8 ~elik~L~~~G~~~~r~~GSH~~~~-~~~~~~~~vP~h~~ei~~g~lk~Ilkqagl~ 63 (70)
T 1whz_A 8 EEVARKLRRLGFVERMAKGGHRLYT-HPDGRIVVVPFHSGELPKGTFKRILRDAGLT 63 (70)
T ss_dssp HHHHHHHHHTTCEEEEEETTEEEEE-CTTSCEEEEECSSSSCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCEEeCCCCCCceEe-cCCCCeeEecCCcCcCCHHHHHHHHHHcCCC
Confidence 5788999999998875422211122 1334578899998 77665544 4555653
No 78
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=26.14 E-value=2.9e+02 Score=23.13 Aligned_cols=104 Identities=9% Similarity=-0.046 Sum_probs=55.5
Q ss_pred cchhHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc-CcEEec
Q 026546 5 YTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-AVQNIP 83 (237)
Q Consensus 5 ~~s~~i~~~~~~~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~-Gv~~v~ 83 (237)
-.|.-|+.++-.+..++..+++|++.. |=+-|...+...++.. ..|.+..+=++ +. .+.|.+. ++..+.
T Consensus 12 ~~~~~~~~~~~~Pifl~L~gk~VLVVG------gG~va~~ka~~Ll~~G--A~VtVvap~~~-~~-l~~l~~~~~i~~i~ 81 (223)
T 3dfz_A 12 HSSGHIEGRHMYTVMLDLKGRSVLVVG------GGTIATRRIKGFLQEG--AAITVVAPTVS-AE-INEWEAKGQLRVKR 81 (223)
T ss_dssp ----------CCEEEECCTTCCEEEEC------CSHHHHHHHHHHGGGC--CCEEEECSSCC-HH-HHHHHHTTSCEEEC
T ss_pred cccCcccccCccccEEEcCCCEEEEEC------CCHHHHHHHHHHHHCC--CEEEEECCCCC-HH-HHHHHHcCCcEEEE
Confidence 467778888777777788889998883 3366777777777753 46888776544 33 4556554 477665
Q ss_pred CCccccccccccCCCEEEEcCCCCCH---HHHHHHHhcCCcEE
Q 026546 84 VEEGKKQFDVVNKGDVVVLPAFGAAV---EEMVTLNNKNVQIV 123 (237)
Q Consensus 84 ~~~~~~~~~~v~~g~~VIirAHGv~~---~v~~~l~~~g~~iv 123 (237)
..-. .+++. +.-+||-|=|.+. .+.+.++ +|+.|-
T Consensus 82 ~~~~---~~dL~-~adLVIaAT~d~~~N~~I~~~ak-~gi~VN 119 (223)
T 3dfz_A 82 KKVG---EEDLL-NVFFIVVATNDQAVNKFVKQHIK-NDQLVN 119 (223)
T ss_dssp SCCC---GGGSS-SCSEEEECCCCTHHHHHHHHHSC-TTCEEE
T ss_pred CCCC---HhHhC-CCCEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence 4211 12333 3336677777764 2333333 565553
No 79
>3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III secretion, cytoplasmic FRAG protein transport; 2.40A {Helicobacter pylori}
Probab=25.50 E-value=40 Score=30.95 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=41.6
Q ss_pred CCEEEEcCCC-----CCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhC
Q 026546 97 GDVVVLPAFG-----AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (237)
Q Consensus 97 g~~VIirAHG-----v~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~ 143 (237)
|....-||+| ++++..++|+..|+.++|+.-=+.+.+-..+++++.+
T Consensus 119 G~~t~ePafgl~a~WI~~~~~e~A~~~Gytvvd~~tViatHLsevi~~~a~e 170 (365)
T 3myd_A 119 GIPTKEPAFGMDALWIDAKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAED 170 (365)
T ss_dssp SEEEECTTTCCEEEEECGGGHHHHHHTTCEEECHHHHHHHHHHHHHHHTGGG
T ss_pred CccccCCCCCCceEeeCHhhHHHHHHCCCEEEcHHHHHHHHHHHHHHHhHHH
Confidence 5557789999 6799999999999999999999999999999888876
No 80
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=25.03 E-value=2.6e+02 Score=22.12 Aligned_cols=112 Identities=8% Similarity=0.057 Sum_probs=64.8
Q ss_pred CCcccHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHhcCcEEecCCcccc-------------------ccc
Q 026546 34 GFCWGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEGKK-------------------QFD 92 (237)
Q Consensus 34 GFC~GV~RAv~~a~~a~~~~~-~~~vy~lgeiI-HN~~Vv~~L~~~Gv~~v~~~~~~~-------------------~~~ 92 (237)
|+--+..+++++. ++++ ....|+.|..+ -||..++++.+.|..+-...-.-. .+.
T Consensus 14 G~~~~~~~il~iL----~~~~v~aTfFv~g~~~~~~~~~~~~~~~~GheIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~ 89 (195)
T 2cc0_A 14 GPSGSTQSLLNAL----RQNGLRATMFNQGQYAAQNPSLVRAQVDAGMWVANHSYTHPHMTQLGQAQMDSEISRTQQAIA 89 (195)
T ss_dssp CCSTTHHHHHHHH----HHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHH----HHcCCCEEEEecChhhhhCHHHHHHHHHCCCEEEcCCCCccccccCCHHHHHHHHHHHHHHHH
Confidence 5555566666654 3332 24689999877 589999999999976543311100 111
Q ss_pred cccCCCEEEEcC-CC-CCHHHHHHHHhcCCcEEeCc-------ChhhHHHHHHHHHHhhCCCeEEEE
Q 026546 93 VVNKGDVVVLPA-FG-AAVEEMVTLNNKNVQIVDTT-------CPWVSKVWTSVEKHKKGDYTSIIH 150 (237)
Q Consensus 93 ~v~~g~~VIirA-HG-v~~~v~~~l~~~g~~ivDaT-------CP~V~kv~~~v~~~~~~Gy~ivIi 150 (237)
++..-....||. .| .++.+.+.+++.|+.+++-+ .|-...+.+.+.+ .+.|--|++|
T Consensus 90 ~~~G~~~~~fr~P~G~~~~~~~~~~~~~G~~~v~w~~d~~Dw~~~~~~~i~~~~~~-~~~g~IiL~H 155 (195)
T 2cc0_A 90 GAGGGTPKLFRPPYGETNATLRSVEAKYGLTEVIWDVDSQDWNNASTDAIVQAVSR-LGNGQVILMH 155 (195)
T ss_dssp HTTSCCCSEECCGGGCCCHHHHHHHHHTTCEECCCSEECCGGGTCCHHHHHHHHHT-CCTTCEEEEE
T ss_pred HHhCCCCCEEECCCCCcCHHHHHHHHHCCCeEEEeccCCCccCCCCHHHHHHHHhC-cCcCeEEEEC
Confidence 221112334554 22 56788999999999986533 3445555555543 3456444443
No 81
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=24.59 E-value=3.1e+02 Score=22.95 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=62.7
Q ss_pred eEEEEeCCC-CCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHh--cCcEEecCCccccccccccCCCEEE
Q 026546 25 VKVKLAESY-GFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNKGDVVV 101 (237)
Q Consensus 25 m~I~lA~~~-GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~--~Gv~~v~~~~~~~~~~~v~~g~~VI 101 (237)
..|+.+... ..--|++..++.+.+..+++++-.+.+.|.--. +...+.+++ ..|.+....+..+-.+-+..-|.+|
T Consensus 209 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v 287 (406)
T 2gek_A 209 RTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYC 287 (406)
T ss_dssp CEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEE
T ss_pred eEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEE
Confidence 456666665 566799999998888777666567888887443 333333332 4577665432111011223467888
Q ss_pred EcCC---CCCHHHHHHHHhcCCcEEeCcChh
Q 026546 102 LPAF---GAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 102 irAH---Gv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
++++ |.+-.+.+.+ ..|+.||=+.++-
T Consensus 288 ~ps~~~e~~~~~~~Ea~-a~G~PvI~~~~~~ 317 (406)
T 2gek_A 288 APHLGGESFGIVLVEAM-AAGTAVVASDLDA 317 (406)
T ss_dssp ECCCSCCSSCHHHHHHH-HHTCEEEECCCHH
T ss_pred ecCCCCCCCchHHHHHH-HcCCCEEEecCCc
Confidence 8865 5565666555 7799998665543
No 82
>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*
Probab=24.54 E-value=84 Score=28.36 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCEEEEc-CCCCCHHHHHHHHhcCCcEEeCcChh
Q 026546 97 GDVVVLP-AFGAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 97 g~~VIir-AHGv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
=|+|++. -||++.+....+.+.|+++||.+-||
T Consensus 80 vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 80 VDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDH 113 (359)
T ss_dssp CCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTT
T ss_pred CCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCc
Confidence 3655442 39999999999999999999988765
No 83
>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*
Probab=24.54 E-value=84 Score=28.36 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCEEEEc-CCCCCHHHHHHHHhcCCcEEeCcChh
Q 026546 97 GDVVVLP-AFGAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 97 g~~VIir-AHGv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
=|+|++. -||++.+....+.+.|+++||.+-||
T Consensus 80 vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 80 VDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDH 113 (359)
T ss_dssp CCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTT
T ss_pred CCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCc
Confidence 3655442 39999999999999999999988765
No 84
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=24.48 E-value=88 Score=24.43 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=16.5
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHH
Q 026546 94 VNKGDVV-VLPAFGAAVEEMVTL 115 (237)
Q Consensus 94 v~~g~~V-IirAHGv~~~v~~~l 115 (237)
+.++|.| +|+.-|-++++.+.+
T Consensus 114 ~~~~d~vI~iS~SG~t~~~~~~~ 136 (198)
T 2xbl_A 114 GNEGDVLIGYSTSGKSPNILAAF 136 (198)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHH
Confidence 4567764 588889999887655
No 85
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=24.46 E-value=1.9e+02 Score=27.34 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=57.7
Q ss_pred EEEEeCCCCC----cccHHHHHHHHHHHHhh--------CCCCceEEecccccC----HHHHHHHHhcCcEEecC--Cc-
Q 026546 26 KVKLAESYGF----CWGVERAVQIAYEARKQ--------FPEEKIWITNEIIHN----PTVNKRLEEMAVQNIPV--EE- 86 (237)
Q Consensus 26 ~I~lA~~~GF----C~GV~RAv~~a~~a~~~--------~~~~~vy~lgeiIHN----~~Vv~~L~~~Gv~~v~~--~~- 86 (237)
.|+.+..-|| ..|-.+|++...+.+-. .+...|-++|..-.+ .++..-|+++|+.++-- .+
T Consensus 180 ~Vv~v~tpgf~Gs~~~G~~~a~~alv~~l~~~~~~~~~~~~~~~VNIig~~~~~~gD~~elkrlL~~~Gi~v~~lpd~s~ 259 (523)
T 3u7q_B 180 PVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSLLSDPEE 259 (523)
T ss_dssp CCCBCCCCTTSSCHHHHHHHHHHHHHHHHHGGGGGGCCTTTTCCEEEECCSCCCHHHHHHHHHHHHHTTCCEEESSCCTT
T ss_pred eEEEeeCCCCCCChhHHHHHHHHHHHHHhcccccccccCCCCCeEEEECCCCCChhHHHHHHHHHHHcCCeEEEecCchh
Confidence 4666777777 67888888866553321 112469999875222 34556668899987531 10
Q ss_pred --------------cccccccc---cCCCE-EEEcCCCCCHHHHHHHHhc-CCcEEeCcChh
Q 026546 87 --------------GKKQFDVV---NKGDV-VVLPAFGAAVEEMVTLNNK-NVQIVDTTCPW 129 (237)
Q Consensus 87 --------------~~~~~~~v---~~g~~-VIirAHGv~~~v~~~l~~~-g~~ivDaTCP~ 129 (237)
+...++++ +.... +++... .....-+.|+++ |+..+....|+
T Consensus 260 ~ld~p~~~~~~~~~ggtt~~ei~~~~~A~~niv~~~~-~~~~~A~~Le~~~GiP~i~~~~Pi 320 (523)
T 3u7q_B 260 VLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPW-HLEKTKKFVEGTWKHEVPKLNIPM 320 (523)
T ss_dssp TTSCCCSSCCCSCCCCBCHHHHHHGGGSSEEEESSGG-GCHHHHHHHHHTSCCCCCCCCCSC
T ss_pred cccccccccccccCCCCCHHHHHHhhcCcEEEEEccc-hHHHHHHHHHHHhCCCeeecCCcC
Confidence 11123333 33332 333222 234556666665 88887766665
No 86
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=24.20 E-value=2e+02 Score=24.14 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=51.9
Q ss_pred CCcccHHHHHHHHHHHHhhCCCCceEEec-ccc--cC---HHHHHHHHhcC-cEEecCCcccccccc--ccCCCEEEEcC
Q 026546 34 GFCWGVERAVQIAYEARKQFPEEKIWITN-EII--HN---PTVNKRLEEMA-VQNIPVEEGKKQFDV--VNKGDVVVLPA 104 (237)
Q Consensus 34 GFC~GV~RAv~~a~~a~~~~~~~~vy~lg-eiI--HN---~~Vv~~L~~~G-v~~v~~~~~~~~~~~--v~~g~~VIirA 104 (237)
..-.-.+|.+.+.+++++... +.++..+ |+| .| ..+++++.+.| +..+++ +|. ++.+ ++++..+|+..
T Consensus 76 ~v~PdeR~~~gli~kaL~~~~-~~~~~~~~pgi~v~~~sle~ll~e~~~~~~v~~L~E-~G~-~i~~~~~~~~~~fvlGd 152 (197)
T 2qmm_A 76 RMSPDERNVAGHIKKALAVEC-GKSWKKVHSGVYVSRKGLEELIEELSEKYSIIYLKE-DGV-DISNAQLPPNPLFVIGD 152 (197)
T ss_dssp SCCSSHHHHHHHHHHHHHSCC-CSSCEEEETTEEEECCCHHHHHHHHHHHSEEEEEEE-EEE-EGGGSCCCSSEEEEEEC
T ss_pred EcChhHHHHHHHHHHHHHhcc-CcccCCCCCCEEEECCCHHHHHHHhhcCCcEEEEcC-CCC-CCchhhcCCCCEEEEeC
Confidence 344578899999999997521 1222222 333 22 34666665434 544543 331 2222 23455789999
Q ss_pred C-CCCHHHHHHHHhcCCcEE
Q 026546 105 F-GAAVEEMVTLNNKNVQIV 123 (237)
Q Consensus 105 H-Gv~~~v~~~l~~~g~~iv 123 (237)
| |.+++..+.+++.+...|
T Consensus 153 H~~f~~e~~~~l~~~~~~~i 172 (197)
T 2qmm_A 153 HEGLTEEQEKVVERYAALKL 172 (197)
T ss_dssp TTCCCHHHHHHHHTTCSEEE
T ss_pred CCCCCHHHHHHHHHhcCeEE
Confidence 9 679998888988886665
No 87
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=23.88 E-value=74 Score=22.07 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=20.9
Q ss_pred CCcceeeeccccCeeE-EEcChhhHHhhhhhh
Q 026546 154 SHEETVATASFAGKYI-IVKNMKEAEYVCDYI 184 (237)
Q Consensus 154 ~HpEv~g~~g~a~~~~-vv~~~~e~~~~~~~~ 184 (237)
+.||+.||..=-+..+ +.++.++++.+.+.+
T Consensus 36 ~~~eI~GTIAGDDTIlvi~r~~~~a~~l~~~i 67 (71)
T 1b4b_A 36 DWDEIVGTICGDDTCLIICRTPKDAKKVSNQL 67 (71)
T ss_dssp CCTTEEEEEECSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCeEEEEeeCCEEEEEECCHHHHHHHHHHH
Confidence 5689999975434444 448888887775443
No 88
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=23.81 E-value=2.6e+02 Score=24.86 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=51.4
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCcc-cccc----ccccCCCE
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG-KKQF----DVVNKGDV 99 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~-~~~~----~~v~~g~~ 99 (237)
+-.+.-+|.-||-|+..|++.+.+. .|..+|-+. ++|....++.-+.|+-.|.=.+. .+++ ..+ .+.+
T Consensus 182 ~vlikdNHi~~~G~i~~Av~~~r~~---~p~~~ieVE---vdtlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i-~~~v 254 (298)
T 3gnn_A 182 GILIKENHIAAAGGVGEALDAAFAL---NAEVPVQIE---VETLDQLRTALAHGARSVLLDNFTLDMMRDAVRVT-EGRA 254 (298)
T ss_dssp -------------CHHHHHHHHHHH---C--CCCEEE---ESSHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH-TTSE
T ss_pred EEEEeHHHHHHcCCHHHHHHHHHHh---CCCCCEEEE---eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh-CCCC
Confidence 3344467788899999999887553 344556555 77876666555678776641110 0111 112 3566
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCc
Q 026546 100 VVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (237)
Q Consensus 100 VIirAHGv~~~v~~~l~~~g~~ivDaT 126 (237)
.|.-+=|++++....+.+.|+.+|-..
T Consensus 255 ~ieaSGGI~~~~i~~~a~tGVD~isvG 281 (298)
T 3gnn_A 255 VLEVSGGVNFDTVRAIAETGVDRISIG 281 (298)
T ss_dssp EEEEESSCSTTTHHHHHHTTCSEEECG
T ss_pred eEEEEcCCCHHHHHHHHHcCCCEEEEC
Confidence 777888899888888888888777543
No 89
>4dfc_B Uvrabc system protein A; alpha/beta domains, DNA repair, ATP binding, DNA binding, NU excision repair, hydrolase-DNA binding protein complex; 2.80A {Escherichia coli}
Probab=23.80 E-value=42 Score=26.17 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=28.5
Q ss_pred HHHHHHhhCCCCceEEecccccCH-----HHHHHHHhcCcEEe
Q 026546 45 IAYEARKQFPEEKIWITNEIIHNP-----TVNKRLEEMAVQNI 82 (237)
Q Consensus 45 ~a~~a~~~~~~~~vy~lgeiIHN~-----~Vv~~L~~~Gv~~v 82 (237)
|+...+....+.+++++-|+|-++ ...+.|+++|..=+
T Consensus 11 ivd~il~~~egtki~iLAPvv~~rKg~~~~ll~~l~~~Gf~Rv 53 (126)
T 4dfc_B 11 MVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRA 53 (126)
T ss_dssp HHHHTTSSCTTCCEEEEEEEEEEEESCCHHHHHHHHHHTCCEE
T ss_pred HHHHHHhCCCCCEEEEEeEEEeCCCCcHHHHHHHHHhCCCeEE
Confidence 455555444456899999999776 68999999997644
No 90
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=23.68 E-value=43 Score=27.19 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=29.0
Q ss_pred EEeCcChhhHHHHHHHHHHhhCCCeEEEEecC---CCcce
Q 026546 122 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY---SHEET 158 (237)
Q Consensus 122 ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~---~HpEv 158 (237)
..|.+||+=++.|...+++.++|.+++++--+ .||+.
T Consensus 93 F~d~~Cp~C~~~~~~l~~l~~~~v~v~~~~~p~~~~~~~s 132 (216)
T 1eej_A 93 FTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDA 132 (216)
T ss_dssp EECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHH
T ss_pred EECCCCHHHHHHHHHHHHHHhCCcEEEEEECCccCCCchH
Confidence 36999999999999999998888887766433 36553
No 91
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=23.33 E-value=1e+02 Score=22.47 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=39.4
Q ss_pred CCceEEecccccCHHHHH-HHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 026546 55 EEKIWITNEIIHNPTVNK-RLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (237)
Q Consensus 55 ~~~vy~lgeiIHN~~Vv~-~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDa 125 (237)
+..+.+.|.+-+++...+ .+++.|-++...... .-+.||.-.- .+ .-+++|++.|+.|||-
T Consensus 10 G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVsk--------kt~~LV~g~~-~g-sK~~kA~~lgI~Ii~E 71 (92)
T 1l7b_A 10 GLTFVITGELSRPREEVKALLRRLGAKVTDSVSR--------KTSYLVVGEN-PG-SKLEKARALGVPTLTE 71 (92)
T ss_dssp TCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSS--------SCCCBEECSS-SS-TTHHHHHCSSSCCEEH
T ss_pred CcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccC--------CeeEEEeCCC-CC-hHHHHHHHcCCcEEeH
Confidence 456778899877666554 458889998865321 1233444322 23 4577889999999974
No 92
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=22.83 E-value=55 Score=26.50 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCcEEeC-------cChhhHHHHHHHHHHhhCCCeEEEEe
Q 026546 109 VEEMVTLNNKNVQIVDT-------TCPWVSKVWTSVEKHKKGDYTSIIHG 151 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDa-------TCP~V~kv~~~v~~~~~~Gy~ivIiG 151 (237)
..+.+.|+++|..|+|- .|.|..-.++.++...+..+=|+|=|
T Consensus 23 ~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~d~GIliCG 72 (148)
T 4em8_A 23 LFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDTSFGVLICG 72 (148)
T ss_dssp HHHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCBTTBEEEEEES
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCeEEEEcc
Confidence 46778899999999997 45677777777776663334455544
No 93
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=22.78 E-value=82 Score=24.39 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=23.0
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHH---HhcCCcEEeCcCh
Q 026546 94 VNKGDVV-VLPAFGAAVEEMVTL---NNKNVQIVDTTCP 128 (237)
Q Consensus 94 v~~g~~V-IirAHGv~~~v~~~l---~~~g~~ivDaTCP 128 (237)
+.++|.| +|+.-|-++++.+.+ +++|+++|=-|+.
T Consensus 108 ~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~ 146 (188)
T 1tk9_A 108 GNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGK 146 (188)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEG
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567864 588889999887654 4555555544443
No 94
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=22.56 E-value=3.2e+02 Score=22.98 Aligned_cols=89 Identities=10% Similarity=0.012 Sum_probs=45.8
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEE-ecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH-------
Q 026546 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQN-IPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL------- 115 (237)
Q Consensus 45 ~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~-v~~~~~~~~~~~v-~~g~~VIirAHGv~~~v~~~l------- 115 (237)
+|...++. +-+|++.. .|+...+.|.+.|+.. ..+ +.++ .+-|+||+ +=..+..+.+.+
T Consensus 22 ~a~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~~------~~e~~~~aDvvi~-~vp~~~~~~~v~~~~~~l~ 89 (303)
T 3g0o_A 22 AARSCLRA--GLSTWGAD---LNPQACANLLAEGACGAAAS------AREFAGVVDALVI-LVVNAAQVRQVLFGEDGVA 89 (303)
T ss_dssp HHHHHHHT--TCEEEEEC---SCHHHHHHHHHTTCSEEESS------STTTTTTCSEEEE-CCSSHHHHHHHHC--CCCG
T ss_pred HHHHHHHC--CCeEEEEE---CCHHHHHHHHHcCCccccCC------HHHHHhcCCEEEE-ECCCHHHHHHHHhChhhHH
Confidence 44444443 23677764 6889999999999876 443 2333 23354443 222222333222
Q ss_pred --HhcCCcEEeCcChhhHHHHHHHHHHhhCCC
Q 026546 116 --NNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145 (237)
Q Consensus 116 --~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy 145 (237)
...|..|||++=..........+.+.+.|.
T Consensus 90 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~ 121 (303)
T 3g0o_A 90 HLMKPGSAVMVSSTISSADAQEIAAALTALNL 121 (303)
T ss_dssp GGSCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred hhCCCCCEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 124566677654444444444444444554
No 95
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Probab=22.39 E-value=2e+02 Score=23.40 Aligned_cols=57 Identities=5% Similarity=-0.047 Sum_probs=34.9
Q ss_pred CCEEEEcC--CC--CCHHHHHHHHhcCCcEEeCcChhhH--HHHHHHHHHhhCCCeEEEEecCC
Q 026546 97 GDVVVLPA--FG--AAVEEMVTLNNKNVQIVDTTCPWVS--KVWTSVEKHKKGDYTSIIHGKYS 154 (237)
Q Consensus 97 g~~VIirA--HG--v~~~v~~~l~~~g~~ivDaTCP~V~--kv~~~v~~~~~~Gy~ivIiG~~~ 154 (237)
++.||.+- ++ ...+..+.|+++|+.=+-- |...+ =|...|....+.||+++++-|.-
T Consensus 78 ~~~vi~K~~~~saF~~t~L~~~L~~~gi~~lvi-~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~ 140 (208)
T 1yac_A 78 DAPYIARPGNINAWDNEDFVKAVKATGKKQLII-AGVVTEVCVAFPALSAIEEGFDVFVVTDAS 140 (208)
T ss_dssp TSCEEEESSCSSGGGSHHHHHHHHHTTCSEEEE-EEBSCCCCCHHHHHHHHHTTCEEEEETTSC
T ss_pred CCeEEeeCCccCCCCCchHHHHHHhcCCCEEEE-EEeccchhHHHHHHHHHHCCCEEEEECccc
Confidence 45555533 11 2468888999999864211 11111 13456777888999999998753
No 96
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=22.32 E-value=1.3e+02 Score=23.58 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=26.6
Q ss_pred ccCCCE-EEEcCCCCCHHHHHH---HHhcCCcEEeCcChhhHH
Q 026546 94 VNKGDV-VVLPAFGAAVEEMVT---LNNKNVQIVDTTCPWVSK 132 (237)
Q Consensus 94 v~~g~~-VIirAHGv~~~v~~~---l~~~g~~ivDaTCP~V~k 132 (237)
+.++|. ++|+.-|-++++.+. ++++|+++|=-|+..-+.
T Consensus 111 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~ 153 (199)
T 1x92_A 111 GQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGG 153 (199)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCc
Confidence 566786 569999999887654 456777776666654433
No 97
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=22.13 E-value=3.2e+02 Score=23.31 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=31.0
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeE
Q 026546 98 DVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (237)
Q Consensus 98 ~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~i 147 (237)
+.|-|+-+|.+++.++.+..++. -..++.+.++.+.+.|..+
T Consensus 121 ~~v~iSld~~~~~~~~~i~~~~~--------~~~~v~~~i~~l~~~g~~v 162 (340)
T 1tv8_A 121 RRINVSLDAIDDTLFQSINNRNI--------KATTILEQIDYATSIGLNV 162 (340)
T ss_dssp CEEEEECCCSSHHHHHHHHSSCC--------CHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEecCCCCHHHHHHhhCCCC--------CHHHHHHHHHHHHHCCCCE
Confidence 45778888888988888765431 3577888888888888744
No 98
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=22.07 E-value=1.3e+02 Score=25.09 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=33.0
Q ss_pred cccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhC
Q 026546 64 IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (237)
Q Consensus 64 iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~ 143 (237)
+=+-+...+-|++.||.+- .=|++||=.|....+.+ +.+.++
T Consensus 35 ~~v~~~a~~~L~~~gI~~e----------------~~V~SAHRtp~~l~~~~----------------------~~a~~~ 76 (181)
T 4b4k_A 35 WETMKYACDILDELNIPYE----------------KKVVSAHRTPDYMFEYA----------------------ETARER 76 (181)
T ss_dssp HHHHHHHHHHHHHTTCCEE----------------EEECCTTTSHHHHHHHH----------------------HHTTTT
T ss_pred HHHHHHHHHHHHHcCCCee----------------EEEEccccChHHHHHHH----------------------HHHHhc
Confidence 3344455566777776532 35789998887766655 456677
Q ss_pred CCeEEEEe
Q 026546 144 DYTSIIHG 151 (237)
Q Consensus 144 Gy~ivIiG 151 (237)
|++|+|.|
T Consensus 77 g~~ViIa~ 84 (181)
T 4b4k_A 77 GLKVIIAG 84 (181)
T ss_dssp TCCEEEEE
T ss_pred CceEEEEe
Confidence 88888776
No 99
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=21.96 E-value=70 Score=26.52 Aligned_cols=27 Identities=15% Similarity=0.423 Sum_probs=22.4
Q ss_pred EeCcChhhHHHHHHHHHHhhCC-CeEEE
Q 026546 123 VDTTCPWVSKVWTSVEKHKKGD-YTSII 149 (237)
Q Consensus 123 vDaTCP~V~kv~~~v~~~~~~G-y~ivI 149 (237)
.|-+||+=.+.|...+++.++| .+++.
T Consensus 105 ~D~~Cp~C~~~~~~l~~~~~~g~v~v~~ 132 (241)
T 1v58_A 105 ADPFCPYCKQFWQQARPWVDSGKVQLRT 132 (241)
T ss_dssp ECTTCHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred ECCCChhHHHHHHHHHHHHhCCcEEEEE
Confidence 5999999999999999988887 44443
No 100
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=21.88 E-value=1.2e+02 Score=22.40 Aligned_cols=26 Identities=4% Similarity=-0.116 Sum_probs=15.1
Q ss_pred HHHHHhhCCCeEEEEecCCCcceeee
Q 026546 136 SVEKHKKGDYTSIIHGKYSHEETVAT 161 (237)
Q Consensus 136 ~v~~~~~~Gy~ivIiG~~~HpEv~g~ 161 (237)
.+.++.++|.+|+++=+.++|=+-++
T Consensus 71 ~i~~~~~~G~~V~~l~d~GdP~i~~~ 96 (117)
T 3hh1_A 71 QVIELLEEGSDVALVTDAGTPAISDP 96 (117)
T ss_dssp HHHHHHHTTCCEEEEEETTSCGGGST
T ss_pred HHHHHHHCCCeEEEEecCCcCeEecc
Confidence 33444566777766666666655443
No 101
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=21.85 E-value=4.3e+02 Score=23.64 Aligned_cols=119 Identities=13% Similarity=0.004 Sum_probs=76.5
Q ss_pred CCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccC-HHHHHHHHhcCcEEecCCcccccccccc
Q 026546 17 GFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHN-PTVNKRLEEMAVQNIPVEEGKKQFDVVN 95 (237)
Q Consensus 17 ~~~~~~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN-~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~ 95 (237)
++.+..|-+++. ...-++----+|++..+-++.++. +.||.+--.--+. +.+++.|++.|+.
T Consensus 170 ~tgikaG~I~~~-~~~~~~t~~E~k~frA~a~aa~et-G~Pv~iHt~~~~~~~e~l~iL~eeG~~--------------- 232 (360)
T 3tn4_A 170 DTGIKAGVIKLA-SSKGRITEYEKMFFRAAARAQKET-GAVIITHTQEGTMGPEQAAYLLEHGAD--------------- 232 (360)
T ss_dssp TSCCCCSEEEEE-CBTTBCCHHHHHHHHHHHHHHHHH-CCEEEEECSTTCCHHHHHHHHHHTTCC---------------
T ss_pred cCCCcceEEEEE-ccCCCCCHHHHHHHHHHHHHHHHh-CCcEEEEcCcccCCHHHHHHHHHcCCC---------------
Confidence 356666766654 344567777788888887777765 3688754333332 3567778777752
Q ss_pred CCCEEEEcC-CCCCHHHHHHHHhcCCcE-EeC-------cChhhHHHHHHHHHHhhCCC--eEEEEec
Q 026546 96 KGDVVVLPA-FGAAVEEMVTLNNKNVQI-VDT-------TCPWVSKVWTSVEKHKKGDY--TSIIHGK 152 (237)
Q Consensus 96 ~g~~VIirA-HGv~~~v~~~l~~~g~~i-vDa-------TCP~V~kv~~~v~~~~~~Gy--~ivIiG~ 152 (237)
...+||.=+ ...+++..+++.++|+.| +|. ++|-..+--+.++.+.++|| +|+|=.|
T Consensus 233 ~~~vvi~H~~~~~d~~~~~~~l~~G~yl~fD~iG~~~~~~~p~d~~r~~~l~~lv~~g~~drILLstD 300 (360)
T 3tn4_A 233 PKKIVIGHMCDNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHD 300 (360)
T ss_dssp GGGEEECCGGGCCCHHHHHHHHTTTCEEEECCTTCCCSTTCCCHHHHHHHHHHHHHTTCGGGEEECCC
T ss_pred CCceEEEcCCCCCCHHHHHHHHHcCCEEEEcccccccccCCCChHHHHHHHHHHHHhcCcceEEEecC
Confidence 112233222 456888899999999999 774 35555555566788888887 5666444
No 102
>2lqk_A Transcriptional regulator; RNA polymerase interacting domain, transcription regulator; NMR {Thermus thermophilus}
Probab=27.21 E-value=19 Score=25.23 Aligned_cols=18 Identities=44% Similarity=0.785 Sum_probs=14.8
Q ss_pred ccccCCCEEEEcCCCCCH
Q 026546 92 DVVNKGDVVVLPAFGAAV 109 (237)
Q Consensus 92 ~~v~~g~~VIirAHGv~~ 109 (237)
+++..||.|+.+.||+..
T Consensus 5 ~~f~~GD~VVy~~hGvg~ 22 (70)
T 2lqk_A 5 KEFRPGDKVVLPPYGVGV 22 (70)
Confidence 456679999999999963
No 103
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A
Probab=21.60 E-value=49 Score=29.76 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=27.1
Q ss_pred CCEEEEc-CCCCCHHHHHHHHhcCCcEEeCcChh
Q 026546 97 GDVVVLP-AFGAAVEEMVTLNNKNVQIVDTTCPW 129 (237)
Q Consensus 97 g~~VIir-AHGv~~~v~~~l~~~g~~ivDaTCP~ 129 (237)
=|+|++. -||++.+....+.++|++|||.+=+|
T Consensus 76 ~Dvvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 76 VDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAF 109 (337)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred CCEEEECCChHHHHHHHHHHHHCCCEEEEcCCcc
Confidence 3655443 38899999999999999999999887
No 104
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=21.46 E-value=78 Score=27.56 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=33.5
Q ss_pred eEEecccccCHHHHHHHHhcCcEEecC-Ccc----ccccccccCCCEEEEcCCCCCH
Q 026546 58 IWITNEIIHNPTVNKRLEEMAVQNIPV-EEG----KKQFDVVNKGDVVVLPAFGAAV 109 (237)
Q Consensus 58 vy~lgeiIHN~~Vv~~L~~~Gv~~v~~-~~~----~~~~~~v~~g~~VIirAHGv~~ 109 (237)
|=.+++=-.+|.+.+-|++.|+..|-. ... ......+ .++.+.+|-||-+.
T Consensus 154 vE~Rh~sW~~~~~~~lL~~~~v~~V~~D~~~~~~~~P~~~~~-t~~~~yvRlHG~~~ 209 (273)
T 1vpq_A 154 VEFRHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPYRPIT-TTDYAYFRFHGRNE 209 (273)
T ss_dssp EECCBGGGCSHHHHHHHHHHTCEEEEEECCCCTTBCCCCCCC-SSSEEEEEECCCCT
T ss_pred EEccCchhccHHHHHHHHHcCcEEEEeCCCCCCCCCCccccc-CCCceEEEEeCCCc
Confidence 445666667899999999999987631 111 0011112 36889999999764
No 105
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=21.44 E-value=2.2e+02 Score=24.89 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=53.6
Q ss_pred ecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEE
Q 026546 22 WGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVV 100 (237)
Q Consensus 22 ~g~m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v-~~g~~V 100 (237)
-..|||++-.. || |=+++ |+.+.+. ..|.+.+ -|+.-.+++++..-.+.-+..+.+.+.++ .+-|.|
T Consensus 14 g~~mkilvlGa-G~---vG~~~--~~~L~~~---~~v~~~~---~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvV 81 (365)
T 3abi_A 14 GRHMKVLILGA-GN---IGRAI--AWDLKDE---FDVYIGD---VNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELV 81 (365)
T ss_dssp --CCEEEEECC-SH---HHHHH--HHHHTTT---SEEEEEE---SCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CCccEEEEECC-CH---HHHHH--HHHHhcC---CCeEEEE---cCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEE
Confidence 35799988844 66 33432 3334332 2465543 36666667665432221111111223332 334644
Q ss_pred EEcCCC--CCHHHHHHHHhcCCcEEeCcC--hhhHHHHHHH
Q 026546 101 VLPAFG--AAVEEMVTLNNKNVQIVDTTC--PWVSKVWTSV 137 (237)
Q Consensus 101 IirAHG--v~~~v~~~l~~~g~~ivDaTC--P~V~kv~~~v 137 (237)
|.+=| ....+.+.+.+.|..++|+|= |.....++.+
T Consensus 82 -i~~~p~~~~~~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a 121 (365)
T 3abi_A 82 -IGALPGFLGFKSIKAAIKSKVDMVDVSFMPENPLELRDEA 121 (365)
T ss_dssp -EECCCGGGHHHHHHHHHHHTCEEEECCCCSSCGGGGHHHH
T ss_pred -EEecCCcccchHHHHHHhcCcceEeeeccchhhhhhhhhh
Confidence 55433 236788899999999999762 3344444443
No 106
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=21.35 E-value=51 Score=26.74 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=26.4
Q ss_pred EeCcChhhHHHHHHHHHHhhCCCeEEEEecC
Q 026546 123 VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (237)
Q Consensus 123 vDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~ 153 (237)
.|-+||+=.+.|...+++.+.|.++.++--+
T Consensus 94 ~d~~Cp~C~~~~~~l~~~~~~~v~v~~~~~p 124 (211)
T 1t3b_A 94 MDITCHYCHLLHQQLKEYNDLGITVRYLAFP 124 (211)
T ss_dssp ECTTCHHHHHHHTTHHHHHHTTEEEEEEECC
T ss_pred ECCCCHhHHHHHHHHHHHHhCCcEEEEEECC
Confidence 6999999999999999998888888766443
No 107
>2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis} SCOP: c.6.2.8
Probab=21.32 E-value=42 Score=28.88 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=29.9
Q ss_pred ceE-EEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccC---HHHHHHHH
Q 026546 24 NVK-VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHN---PTVNKRLE 75 (237)
Q Consensus 24 ~m~-I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN---~~Vv~~L~ 75 (237)
.|+ |+-|.-+|+|.||.+||..+.+. +.|-..+=|+=- ++.++.++
T Consensus 4 ~~~LIvnADDfGls~~vN~gI~~~~~~------G~ltstslMvn~p~~~~A~~~~k 53 (263)
T 2i5i_A 4 NKKLIINADDFGYTPAVTQGIIEAHKR------GVVTSTTALPTSPYFLEAMESAR 53 (263)
T ss_dssp CCEEEEEEEEETSSHHHHHHHHHHHHS------SSCCEEEECTTSTTHHHHHHHHH
T ss_pred ccEEEEEcccCCCChhHHHHHHHHHHC------CcceEeeeccCCcHHHHHHHHHH
Confidence 355 46699999999999999887642 234444444433 45555556
No 108
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3
Probab=21.29 E-value=2.8e+02 Score=23.16 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=20.1
Q ss_pred eEEecccccCHHHHHHHHhcCcEEecC
Q 026546 58 IWITNEIIHNPTVNKRLEEMAVQNIPV 84 (237)
Q Consensus 58 vy~lgeiIHN~~Vv~~L~~~Gv~~v~~ 84 (237)
.|-.----.|+.+.+.|+++|..++..
T Consensus 140 ~fr~P~G~~~~~~~~~l~~~G~~~v~w 166 (254)
T 2iw0_A 140 YMRAPYLSCDAGCQGDLGGLGYHIIDT 166 (254)
T ss_dssp EECCGGGCCCHHHHHHHHHTTCEEECC
T ss_pred EEECCCCCCCHHHHHHHHHcCCeEEEe
Confidence 333333457999999999999998753
No 109
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=21.08 E-value=1.3e+02 Score=23.49 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 026546 109 VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (237)
Q Consensus 109 ~~v~~~l~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~HpE 157 (237)
.+.+++|+++|..++=+|+=--........-+.+.|...-+++. +|||
T Consensus 30 ~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I~~-n~P~ 77 (142)
T 2obb_A 30 VETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANK-DYPE 77 (142)
T ss_dssp HHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESS-SSTT
T ss_pred HHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEEEc-CCch
Confidence 67888999999999999984323333334445556766555554 8888
No 110
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=20.95 E-value=79 Score=23.42 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=25.6
Q ss_pred CcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCC
Q 026546 120 VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSH 155 (237)
Q Consensus 120 ~~ivDaTCP~V~kv~~~v~~~~~~Gy~ivIiG~~~H 155 (237)
+-++|++.+........+..+...+..++++|.+.-
T Consensus 83 i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 118 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMD 118 (178)
T ss_dssp EEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECcc
Confidence 455788887666666666666667788888887653
No 111
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=20.86 E-value=2.4e+02 Score=31.60 Aligned_cols=75 Identities=17% Similarity=0.039 Sum_probs=54.2
Q ss_pred ceEEecccccCHHHH-------HHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHH--HHHHHHhcCCcEEeCcC
Q 026546 57 KIWITNEIIHNPTVN-------KRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVE--EMVTLNNKNVQIVDTTC 127 (237)
Q Consensus 57 ~vy~lgeiIHN~~Vv-------~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~--v~~~l~~~g~~ivDaTC 127 (237)
.-|..+.++|||... +.+.+.|+.+. . |.-+.|+|.. ..+.+++.|+.++ ..+
T Consensus 638 ~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~----------------g-v~~~~G~p~~e~~~~~l~~~gi~~i-~~v 699 (2060)
T 2uva_G 638 RGITVNLIYVNPRAMGWQIPLLGRLRADGVPIE----------------G-LTIGAGVPSIEVANEYIQTLGIRHI-SFK 699 (2060)
T ss_dssp CCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEE----------------E-EEEESSCCCHHHHHHHHHHSCCSEE-EEC
T ss_pred CCeEecccccCcccchhHHHHHHHHHHcCCCcc----------------e-EeecCCCCCHHHHHHHHHHcCCeEE-Eec
Confidence 458888899998732 33333333221 0 4556788654 7889999999999 888
Q ss_pred hhhHHHHHHHHHHhhCCCeEEE
Q 026546 128 PWVSKVWTSVEKHKKGDYTSII 149 (237)
Q Consensus 128 P~V~kv~~~v~~~~~~Gy~ivI 149 (237)
|-+.-..+.+.++.+.|-..||
T Consensus 700 ~~~~~a~~~v~~l~~aG~D~iV 721 (2060)
T 2uva_G 700 PGSVDAIQQVINIAKANPTFPI 721 (2060)
T ss_dssp CCSHHHHHHHHHHHHHCTTSCE
T ss_pred CCHHHHHHHHHHHHHcCCCEEE
Confidence 9888888888888899888777
No 112
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=20.83 E-value=1.8e+02 Score=23.41 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=54.1
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 026546 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (237)
Q Consensus 36 C~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirAHGv~~~v~~~l 115 (237)
.+.|+.|++...+.. +++.+++++ +=||+-..+|-+.|+. +++.+=+ .+. -.+|..-|-++=-++++..+.+
T Consensus 59 i~sve~ai~~~~~~~--~~~~~v~ll---~k~p~d~~~lve~Gv~-i~~iNvG-~m~-~~~gk~~i~~~v~v~~ed~~~l 130 (164)
T 1nrz_A 59 VVSLEKAVAVYHNPQ--YQDETVFYL---FTNPHDVLTMVRQGVQ-IATLNIG-GMA-WRPGKKQLTKAVSLDPQDIQAF 130 (164)
T ss_dssp EECHHHHHHHHTCGG--GTTCEEEEE---ESSHHHHHHHHTTTCC-CSEEEEE-EBC-CCTTCEEEETTEEECHHHHHHH
T ss_pred EEEHHHHHHHHhccc--CCCceEEEE---ECCHHHHHHHHHcCCC-CCEEEEC-CCc-CCCCCeEEeccEeeCHHHHHHH
Confidence 478999988776533 345678886 7899999999999996 4432100 011 1357778888888898887665
Q ss_pred ---HhcCCcEE
Q 026546 116 ---NNKNVQIV 123 (237)
Q Consensus 116 ---~~~g~~iv 123 (237)
.++|+++.
T Consensus 131 k~L~~~Gv~v~ 141 (164)
T 1nrz_A 131 RELDKLGVKLD 141 (164)
T ss_dssp HHHHHTTCEEE
T ss_pred HHHHHCCCEEE
Confidence 44555554
No 113
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=20.76 E-value=1.3e+02 Score=25.24 Aligned_cols=90 Identities=11% Similarity=-0.049 Sum_probs=51.3
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH--------
Q 026546 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL-------- 115 (237)
Q Consensus 45 ~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v-~~g~~VIirAHGv~~~v~~~l-------- 115 (237)
++...++. + -+|++.. .|+...++|.+.|+.+.++ +.++ .+-|+||+- =..+..+.+.+
T Consensus 16 ~a~~l~~~-G-~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~~~~~~aDvvi~~-vp~~~~~~~v~~~~~~l~~ 83 (287)
T 3pef_A 16 MAKNLVKA-G-CSVTIWN---RSPEKAEELAALGAERAAT------PCEVVESCPVTFAM-LADPAAAEEVCFGKHGVLE 83 (287)
T ss_dssp HHHHHHHT-T-CEEEEEC---SSGGGGHHHHHTTCEECSS------HHHHHHHCSEEEEC-CSSHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHC-C-CeEEEEc---CCHHHHHHHHHCCCeecCC------HHHHHhcCCEEEEE-cCCHHHHHHHHcCcchHhh
Confidence 44444443 2 3677654 5888889999999987754 3333 234555443 22222333333
Q ss_pred -HhcCCcEEeCcChhhHHHHHHHHHHhhCCCe
Q 026546 116 -NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146 (237)
Q Consensus 116 -~~~g~~ivDaTCP~V~kv~~~v~~~~~~Gy~ 146 (237)
...|..|||.+--........++.+.+.|..
T Consensus 84 ~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~ 115 (287)
T 3pef_A 84 GIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR 115 (287)
T ss_dssp HCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence 1357778887765555566666666666644
No 114
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=20.74 E-value=3.6e+02 Score=22.21 Aligned_cols=117 Identities=9% Similarity=0.037 Sum_probs=70.2
Q ss_pred eEEEEeCCCCCccc-HHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHhcCcEEecCCcccc------------
Q 026546 25 VKVKLAESYGFCWG-VERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEGKK------------ 89 (237)
Q Consensus 25 m~I~lA~~~GFC~G-V~RAv~~a~~a~~~~~-~~~vy~lgeiI-HN~~Vv~~L~~~Gv~~v~~~~~~~------------ 89 (237)
..|.|-=--|+-.+ ..+++++..+ ++ ..-.|+.|.-+ .||..++++.+.|..+-...-.-.
T Consensus 43 k~V~LTFDDG~~~~~t~~il~iL~~----~~v~ATfFv~g~~~~~~p~~~~~~~~~GheIg~Ht~~H~~l~~ls~~~~~~ 118 (240)
T 1ny1_A 43 KTIYLTFDNGYENGYTPKVLDVLKK----HRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNHSFHHPDLTTKTADQIQD 118 (240)
T ss_dssp SEEEEEEEESSCCSCHHHHHHHHHH----TTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSCCCGGGSCHHHHHH
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHH----cCCCEEEEEeChhhhhCHHHHHHHHHCcCChhcCCccccccccCCHHHHHH
Confidence 45666655566543 4566666543 32 24689999866 489999999999976643311100
Q ss_pred -------ccccccCCC-EEEEcCCC--CCHHHHHHHHhcCCcEEeCcC----------hhhHHHHHHHHHHhhCCC
Q 026546 90 -------QFDVVNKGD-VVVLPAFG--AAVEEMVTLNNKNVQIVDTTC----------PWVSKVWTSVEKHKKGDY 145 (237)
Q Consensus 90 -------~~~~v~~g~-~VIirAHG--v~~~v~~~l~~~g~~ivDaTC----------P~V~kv~~~v~~~~~~Gy 145 (237)
.+.++.... ...||.-+ .++.+.+.+++.|+.+++-+. |-...+.+.+.+..+.|-
T Consensus 119 ei~~~~~~l~~~~G~~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~w~~d~~Dw~~~~~~~~~~~~~~v~~~~~~g~ 194 (240)
T 1ny1_A 119 ELDSVNEEVYKITGKQDNLYLRPPRGVFSEYVLKETKRLGYQTVFWSVAFVDWKINNQKGKKYAYDHMIKQAHPGA 194 (240)
T ss_dssp HHHHHHHHHHHHHSCCCCCEECCGGGEECHHHHHHHHHTTCEEBCCSBCCSCCCGGGCCCHHHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHHHHhCCCCCcEEeCCCCCCCHHHHHHHHHcCCEEEECcccccccCCcCCCCHHHHHHHHHhCCCCCe
Confidence 111221112 45677632 578999999999999865332 234455555555556664
No 115
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=20.48 E-value=2e+02 Score=25.96 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=57.0
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec--CCccccccccc---cCCCE
Q 026546 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEGKKQFDVV---NKGDV 99 (237)
Q Consensus 25 m~I~lA~~~GFC~GV~RAv~~a~~a~~~~~~~~vy~lgeiIHN~~Vv~~L~~~Gv~~v~--~~~~~~~~~~v---~~g~~ 99 (237)
+-.+.-.+.-||-|+..|++.+.+. .|..+|-+ .|.|....+...+.|+-.|. +-+ .+++.++ -++.+
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~---~p~~kIeV---EVdtldea~eAl~aGaD~I~LDn~~-~~~l~~av~~l~~~v 276 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQL---NPGKPVEV---ETETLAELEEAISAGADIIMLDNFS-LEMMREAVKINAGRA 276 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHH---STTSCEEE---EESSHHHHHHHHHTTCSEEEEESCC-HHHHHHHHHHHTTSS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHh---CCCCeEEE---EECCHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhCCCC
Confidence 3344456778888999999877543 45455555 57776555555556765553 210 0011110 12456
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeC
Q 026546 100 VVLPAFGAAVEEMVTLNNKNVQIVDT 125 (237)
Q Consensus 100 VIirAHGv~~~v~~~l~~~g~~ivDa 125 (237)
.|.-+=|++++....+.+.|+.+|-.
T Consensus 277 ~ieaSGGIt~~~I~~~a~tGVD~isv 302 (320)
T 3paj_A 277 ALENSGNITLDNLKECAETGVDYISV 302 (320)
T ss_dssp EEEEESSCCHHHHHHHHTTTCSEEEC
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 67777888888888888888777643
No 116
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=20.47 E-value=88 Score=22.30 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=21.3
Q ss_pred CCCcceeeeccccCeeEEE-cChhhHHhhhhhh
Q 026546 153 YSHEETVATASFAGKYIIV-KNMKEAEYVCDYI 184 (237)
Q Consensus 153 ~~HpEv~g~~g~a~~~~vv-~~~~e~~~~~~~~ 184 (237)
.+.||+.||..=-+..+|+ ++.++++.+.+.+
T Consensus 47 ~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~~l 79 (83)
T 2p5m_A 47 LDWDEMMGTICGDDTILIICRTPEDTEGVKNRL 79 (83)
T ss_dssp TTCTTCCEEEECSSEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEecCCEEEEEECCHHHHHHHHHHH
Confidence 4568999997543445444 8888887765443
No 117
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=20.34 E-value=86 Score=27.22 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=32.1
Q ss_pred ccCCCE-EEEcCCCCCHHHHH---HHHhcCCcEEeCcChhhHHHHH
Q 026546 94 VNKGDV-VVLPAFGAAVEEMV---TLNNKNVQIVDTTCPWVSKVWT 135 (237)
Q Consensus 94 v~~g~~-VIirAHGv~~~v~~---~l~~~g~~ivDaTCP~V~kv~~ 135 (237)
+.++|+ |+|+.-|-+|++.+ .++++|..+|=-||..-+.+-+
T Consensus 138 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~ 183 (306)
T 1nri_A 138 FSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAE 183 (306)
T ss_dssp CCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHH
Confidence 556786 46999999998765 5577999999889976665543
No 118
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=20.19 E-value=2e+02 Score=25.41 Aligned_cols=100 Identities=12% Similarity=0.000 Sum_probs=64.0
Q ss_pred eEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC----CCCCHHHHHHHHhcCCcEEeCcChhhHHH
Q 026546 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA----FGAAVEEMVTLNNKNVQIVDTTCPWVSKV 133 (237)
Q Consensus 58 vy~lgeiIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~g~~VIirA----HGv~~~v~~~l~~~g~~ivDaTCP~V~kv 133 (237)
++-+..|-||=..+.+.-. ++.+. -++-| || .+++.+.+.+.|+.-+|..++-
T Consensus 15 ~idl~~i~~N~~~l~~~~~-~~~l~-----------------~vvKanaYG~~-~~~i~~~l~~~G~~~~~vas~~---- 71 (384)
T 1xfc_A 15 MVDLGAIEHNVRVLREHAG-HAQLM-----------------AVVKADGYGHG-ATRVAQTALGAGAAELGVATVD---- 71 (384)
T ss_dssp EEEHHHHHHHHHHHHHHHT-TSEEE-----------------EECHHHHHTTC-HHHHHHHHHHTTCCEEEESCHH----
T ss_pred EEeHHHHHHHHHHHHHhCC-CCEEE-----------------EEEeeCCcCCC-hHHHHHHHHHCCCCEEEEeEHH----
Confidence 5666777888665554432 33322 34677 88 4677778888898777655443
Q ss_pred HHHHHHHhhCCCe--EEEEecCCCcceeeeccccCeeEEEcChhhHHhhhhh
Q 026546 134 WTSVEKHKKGDYT--SIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDY 183 (237)
Q Consensus 134 ~~~v~~~~~~Gy~--ivIiG~~~HpEv~g~~g~a~~~~vv~~~~e~~~~~~~ 183 (237)
++..+.+.|.. |+++|...-.|+.-...+ +=.+.|.++++++.+.+.
T Consensus 72 --Ea~~~~~~G~~~~Il~~g~~~~~~~~~~~~~-~i~~~vds~~~l~~l~~~ 120 (384)
T 1xfc_A 72 --EALALRADGITAPVLAWLHPPGIDFGPALLA-DVQVAVSSLRQLDELLHA 120 (384)
T ss_dssp --HHHHHHHTTCCSCEEECCCCTTCCCHHHHHT-TCEEEECSHHHHHHHHHH
T ss_pred --HHHHHHhcCCCCCEEEEcCCCHHHHHHHHHc-CcEEEECCHHHHHHHHHH
Confidence 45556667775 888886544455544433 334778999999888654
No 119
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A*
Probab=20.13 E-value=1.3e+02 Score=26.19 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=25.1
Q ss_pred CCCCcccHHHHHHHHHHHHhh-CCCCceEEecccccCHHH
Q 026546 32 SYGFCWGVERAVQIAYEARKQ-FPEEKIWITNEIIHNPTV 70 (237)
Q Consensus 32 ~~GFC~GV~RAv~~a~~a~~~-~~~~~vy~lgeiIHN~~V 70 (237)
.+|..||+ |.+.+.+..+- +-.-.-|..||+-|+|..
T Consensus 194 G~G~~~~~--A~E~aLKl~E~~~i~a~~~~~~E~~HGp~~ 231 (325)
T 2e5f_A 194 GSGLLYPV--ALEASLKMKEMSIFWSEAYPTFEVRHGFKA 231 (325)
T ss_dssp ECTTHHHH--HHHHHHHHHHHHCCEEEEEEGGGGGTTGGG
T ss_pred ccCCCHHH--HHHHHHHHHHHHHHHhhhcCHHHhhhccHh
Confidence 56888888 66766664432 111247899999999953
No 120
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.10 E-value=1.2e+02 Score=23.41 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=23.2
Q ss_pred ccCCCE-EEEcCCCCCHHHHHH---HHhcCCcEEeCcCh
Q 026546 94 VNKGDV-VVLPAFGAAVEEMVT---LNNKNVQIVDTTCP 128 (237)
Q Consensus 94 v~~g~~-VIirAHGv~~~v~~~---l~~~g~~ivDaTCP 128 (237)
+.++|. ++|+.-|-++++.+. ++++|.++|=-|+.
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~ 118 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCE 118 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESS
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence 445776 569999999888644 45566666555553
Done!