BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026547
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 324 bits (831), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 152/225 (67%), Positives = 185/225 (82%)
Query: 13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK 72
GLLQSEEL +YIL TSVYPRE LKE+R+ HP + MST+P AGQLM+ +LKLVNAK
Sbjct: 13 GLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAK 72
Query: 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
KTIE+GVFTGYSLLLTAL+IP+DG+I AID +RE YEIGLP I+KAGV+HKINFIES+A+
Sbjct: 73 KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAM 132
Query: 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSE 192
LD LL+ E+EGS+D+ FVDADK NY YHERLMKL+KVGGI YDNTLWGGTVA E
Sbjct: 133 LALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPE 192
Query: 193 EQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237
+VPD ++ R+A ++LN+ LA DPRI++ H+PLGDGIT C R++
Sbjct: 193 SEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRRLY 237
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 290 bits (743), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 182/224 (81%), Gaps = 1/224 (0%)
Query: 14 LLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKK 73
LLQS+ LY+YILETSV+PRE E +KE+R+VTA HP +M+T+ D GQ ++MLLKL+NAK
Sbjct: 23 LLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKN 82
Query: 74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133
T+EIGV+TGYSLL TAL IPEDG+I+A+D+N+E YE+GLPVIKKAGVDHKI+F E AL
Sbjct: 83 TMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 142
Query: 134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGT-VAMSE 192
VLD+++KD +N GS+D+ FVDADK NY NYH+RL+ L+KVGG+ YDNTLW G+ VA +
Sbjct: 143 VLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPD 202
Query: 193 EQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
+ ++R R L+LN++LA DPRI++ +P+GDGITIC RI
Sbjct: 203 APLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 119/216 (55%), Gaps = 8/216 (3%)
Query: 20 LYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGV 79
LY Y+ S+ + +L ++R TA P A M +P+ Q + +L+ L AK+ +EIGV
Sbjct: 24 LYSYL--QSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGV 81
Query: 80 FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL 139
F GYS L AL +P DGQI+A D + I +KAGV KI+ AL+ L+QL
Sbjct: 82 FRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLT 141
Query: 140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHL 199
+ + FD F+DADK NY Y+E + LL+ GG+ V DN LW G V + Q
Sbjct: 142 Q-GKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQ----- 195
Query: 200 RGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
Q NR LA D R+++S +PLGDG+T+ +
Sbjct: 196 EAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALK 231
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 8/220 (3%)
Query: 17 SEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIE 76
+ ELY+Y+L+ S+ RE L +R T+ A M AP+ Q M ML++L AKK +E
Sbjct: 9 TPELYKYLLDISL--REHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLE 66
Query: 77 IGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD 136
+G FTGYS L +L +P+DGQ++ D+N + P ++A +HKI AL L
Sbjct: 67 LGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLH 126
Query: 137 QLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVP 196
LL + E FD+ F+DADK NY NY+E +KL+ G+ DN W G V P
Sbjct: 127 SLLNEG-GEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVI-----DP 180
Query: 197 DHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
+ G + LN+ + +D R+ +S + + DG+ + I
Sbjct: 181 NDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPI 220
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 8/221 (3%)
Query: 16 QSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTI 75
+ L++Y+L S+ RE L+ +R +T + P+ + QL+A L +L+ AKK +
Sbjct: 17 EDSRLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKAL 74
Query: 76 EIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135
++G FTGYS L AL +P DG+++ +V+ + E+G P+ ++A +HKI+ AL L
Sbjct: 75 DLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL 134
Query: 136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQV 195
D+LL E G+FD A VDADK N Y+ER ++LL+ GGI LW G V
Sbjct: 135 DELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQ----- 188
Query: 196 PDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
P + +LN + D R+ +S +PLGDG+T+ ++I
Sbjct: 189 PPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 122/222 (54%), Gaps = 9/222 (4%)
Query: 15 LQSEELYRYILETSVYPREPEHLKEIRD-VTADHPRAMMSTAPDAGQLMAMLLKLVNAKK 73
L + ELY+Y+L+ S+ REP L E+R+ T TAP+ QL+A+L+KL AKK
Sbjct: 10 LLTPELYQYLLQVSL--REPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKK 67
Query: 74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133
I+IG FTGYS + L +P+DG ++ DV+ ++ + +KAG+ KI S A
Sbjct: 68 VIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD 127
Query: 134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEE 193
L +L+ + +D ++DADK N Y+E +KLL+ GG+ DN L G VA E
Sbjct: 128 TLAELIHAGQ-AWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEEN 186
Query: 194 QVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
Q ++ Q N+ + D R+ +P+GDG+T+ +
Sbjct: 187 QSENN-----QLIRLFNQKVYKDERVDXILIPIGDGLTLARK 223
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 125/227 (55%), Gaps = 19/227 (8%)
Query: 17 SEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIE 76
+E L YI SV REP+ ++R T +A M +P+ GQ + +L K+ AK+ IE
Sbjct: 9 TESLEEYIFRNSV--REPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIE 66
Query: 77 IGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD 136
IG FTGYS L A +PEDG+I+ DV+ E + K+ G+++KI AL L
Sbjct: 67 IGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETL- 125
Query: 137 QLLKDSENE-----------GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWG 185
Q+L DS++ S D F+DADK NY NY+ ++KLLK GG+ + DN LW
Sbjct: 126 QVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWD 185
Query: 186 GTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITI 232
G+VA Q P + G R+ N + +D + +S VP+ DG+++
Sbjct: 186 GSVADLSHQEPSTV-GIRK----FNELVYNDSLVDVSLVPIADGVSL 227
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 14/185 (7%)
Query: 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPV 114
A + GQ +A+L++L AK+ +EIG GYS + A +P DGQ++ ++ + ++
Sbjct: 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 115 IKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG 174
++ AGVD ++ E AL L+ L + +FD F+DADK N +Y ++ + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 175 GIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPR-----IQLSHVPLGDG 229
+ + DN + G V ++ + + ++G RQ +PR +Q DG
Sbjct: 164 TLIIGDNVVRDGEV-VNPQSADERVQGVRQ----FIEXXGAEPRLTATALQTVGTKGWDG 218
Query: 230 ITICW 234
T+ W
Sbjct: 219 FTLAW 223
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 37 LKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDG 96
L+E+ V A +P G+ + +L+++ A+ +EIG GYS + A + G
Sbjct: 25 LEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGG 84
Query: 97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDAD 156
+++ ++ + + +I I++A ++ ++ AL L Q+ ++E FD+ F+DAD
Sbjct: 85 RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI--ENEKYEPFDFIFIDAD 142
Query: 157 KVNYWNYHERLMKLLKVGGIAVYDNTLWGGTV 188
K N Y E +KL + G + + DN + G V
Sbjct: 143 KQNNPAYFEWALKLSRPGTVIIGDNVVREGEV 174
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Query: 65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKI 124
LLK + +EIG GYS + A +PE I++I+ + YE +K G++ +I
Sbjct: 49 LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 125 NFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLW 184
+ +AL + ++L E FD F+DA K Y + + ++ GG+ + DN L+
Sbjct: 108 ELLFGDALQLGEKL----ELYPLFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 185 GGTVAMSEEQVPDHLRGGRQAT-LD-LNRSLADDPRIQLSHVPLGDGITICWR 235
G VA ++ +H R + AT +D N+ L + P+ P+GDGI I +
Sbjct: 164 RGLVAETD---IEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIK 213
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 6/175 (3%)
Query: 61 LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV 120
L+ L++ N K +EIG GYS A +I +D + I+ N + +
Sbjct: 62 LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 121 DHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180
++++ IE AL + + N+ +D F+DA K + E LLK G+ + D
Sbjct: 121 ENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 181 NTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
N L+ G V+ ++R + D N L P + + + DG+ I +
Sbjct: 176 NVLYHGFVSDIGIVRSRNVRQXVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK 230
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 82/177 (46%), Gaps = 4/177 (2%)
Query: 13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK 72
G + + + RY+ + + P +P+ + E D M+ GQ+M +++ +
Sbjct: 2 GDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPS 60
Query: 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
+E+G + GYS + A + +++ +++N + I ++ AG+ K+ + +
Sbjct: 61 LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ 120
Query: 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMK--LLKVGGIAVYDNTLWGGT 187
++ QL K + + + D F+D K Y L K LL+ G + + DN + GT
Sbjct: 121 DLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT 176
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 82/177 (46%), Gaps = 4/177 (2%)
Query: 13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK 72
G + + + RY+ + + P +P+ + E D M+ GQ+M +++ +
Sbjct: 4 GDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPS 62
Query: 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
+E+G + GYS + A + +++ +++N + I ++ AG+ K+ + +
Sbjct: 63 LVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQ 122
Query: 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMK--LLKVGGIAVYDNTLWGGT 187
++ QL K + + + D F+D K Y L K LL+ G + + DN + GT
Sbjct: 123 DLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT 178
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 82/177 (46%), Gaps = 4/177 (2%)
Query: 13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK 72
G + + + RY+ + + P +P+ + E D M+ GQ+M +++ +
Sbjct: 2 GDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPS 60
Query: 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
+E+G + GYS + A + +++ +++N + I ++ AG+ K+ + +
Sbjct: 61 LVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQ 120
Query: 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMK--LLKVGGIAVYDNTLWGGT 187
++ QL K + + + D F+D K Y L K LL+ G + + DN + GT
Sbjct: 121 DLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT 176
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 31 PREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTAL 90
P + + E D + M+ G+++ +++ +E+G + GYS + A
Sbjct: 21 PGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMAR 80
Query: 91 TIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150
+ +++ I++N + I ++ AGV K+ + + ++ QL K + + + D
Sbjct: 81 LLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDM 139
Query: 151 AFVDADKVNYWNYHERL--MKLLKVGGIAVYDNTLWGGTVAMSEEQVPD---HLRG 201
F+D K Y L LL+ G + + DN + G PD H+RG
Sbjct: 140 VFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA--------PDFLAHVRG 187
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 31 PREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTAL 90
P + + E D + M+ G+++ +++ +E+G + GYS + A
Sbjct: 18 PGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMAR 77
Query: 91 TIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150
+ +++ I++N + I ++ AGV K+ + + ++ QL K + + + D
Sbjct: 78 LLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDM 136
Query: 151 AFVDADKVNYWNYHERL--MKLLKVGGIAVYDNTLWGGTVAMSEEQVPD---HLRG 201
F+D K Y L LL+ G + + DN + G PD H+RG
Sbjct: 137 VFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA--------PDFLAHVRG 184
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 31 PREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTAL 90
P + + E D + M+ G+++ +++ +E+G + GYS + A
Sbjct: 18 PGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMAR 77
Query: 91 TIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150
+ +++ I++N + I ++ AG+ K+ + + ++ QL K + + + D
Sbjct: 78 LLSPGARLITIEINPDCAAITQRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVD-TLDM 136
Query: 151 AFVDADKVNYWNYHERL--MKLLKVGGIAVYDNTLWGGTVAMSEEQVPD---HLRG 201
F+D K Y L LL+ G + + DN + G PD H+RG
Sbjct: 137 VFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA--------PDFLAHVRG 184
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 31 PRE---PEHLKEIR--DVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSL 85
PRE PEHLKE D + +A +M LL L K +EIG GY
Sbjct: 33 PREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHA 92
Query: 86 LLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI 127
+TA + EDG +++I+ E E ++K G D+ I +
Sbjct: 93 AVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIV 134
>pdb|3C3P|A Chain A, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|B Chain B, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|C Chain C, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
Length = 210
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 13/178 (7%)
Query: 59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA 118
G+L+ +L ++ + + G G + A I +++ ID +R+ E +
Sbjct: 45 GRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVXIDPDRDNVEHARRXLHDN 104
Query: 119 GVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAV 178
G+ ++ + L + + + D F D D N + ER + L + +
Sbjct: 105 GLIDRVELQVGDPLGI-------AAGQRDIDILFXDCDVFNGADVLERXNRCLAKNALLI 157
Query: 179 YDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
N L G+VA S E P+ A + N L+ + VP+G+G+ + +R+
Sbjct: 158 AVNALRRGSVAESHED-PET-----AALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL 209
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 60 QLMAMLLKLVNAKK---TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK 116
LMA+ ++ V K +EIG TGY+ + + + E G +++++ +R+ EI ++
Sbjct: 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE 121
Query: 117 KAGVDHKI 124
+ G+++ I
Sbjct: 122 RLGIENVI 129
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 196 PDHLRGGRQATLDLNRSLADDPRIQLSHVPLG 227
P+ L GG+Q + + R+LA++P I L+ P G
Sbjct: 143 PNQLSGGQQQRVAIARALANNPPIILADQPTG 174
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 196 PDHLRGGRQATLDLNRSLADDPRIQLSHVPLG 227
P+ L GG+Q + + R+LA++P I L+ P G
Sbjct: 143 PNQLSGGQQQRVAIARALANNPPIILADEPTG 174
>pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|B Chain B, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|C Chain C, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|D Chain D, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|E Chain E, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|F Chain F, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|G Chain G, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|H Chain H, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
Length = 262
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 86 LLTALTIPEDGQIMAI-DVNRETYEIGLPVIKKAGVDHKINFI----ESEALSVLDQLLK 140
L TAL + E+G +A+ D+NRE E +++ GV+ + E + +D +++
Sbjct: 21 LATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVR 80
Query: 141 DSENEGSFDYAFVDA 155
D G D+ F +A
Sbjct: 81 DF---GKIDFLFNNA 92
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 193 EQVPDHLRGGRQATLDLNRSLADDPRIQLSHV 224
E +P+++ G A +DLNR D R++ SHV
Sbjct: 157 ESLPNYVGRGNAANIDLNRDFPD--RLEQSHV 186
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 95 DGQIMAIDVNRETYEIGLPVI-----KKAGVDHKI 124
DGQ I+V++ +Y +G+PV+ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 95 DGQIMAIDVNRETYEIGLPVI-----KKAGVDHKI 124
DGQ I+V++ +Y +G+PV+ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 95 DGQIMAIDVNRETYEIGLPVI-----KKAGVDHKI 124
DGQ I+V++ +Y +G+PV+ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 95 DGQIMAIDVNRETYEIGLPVI-----KKAGVDHKI 124
DGQ I+V++ +Y +G+PV+ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 95 DGQIMAIDVNRETYEIGLPVI-----KKAGVDHKI 124
DGQ I+V++ +Y +G+PV+ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 95 DGQIMAIDVNRETYEIGLPVI-----KKAGVDHKI 124
DGQ I+V++ +Y +G+PV+ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|1UN9|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
pdb|1UN9|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
Length = 552
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 25 LETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
+ETS +P P +EI V + H A + P A L+A +++LV A
Sbjct: 322 VETSNWP-TPVPPREITCVVSSHASARVEFQPSANALVAGIVELVTA 367
>pdb|1UN8|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
pdb|1UN8|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
Length = 552
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 25 LETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
+ETS +P P +EI V + H A + P A L+A +++LV A
Sbjct: 322 VETSNWP-TPVPPREITCVVSSHASARVEFQPSANALVAGIVELVTA 367
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAID------VNRETYEIGLPVIKKAGVDHK 123
N K I +GVFTG S LT L I E+ ++ +D N ++ E+G D+
Sbjct: 90 NRLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVG---------DND 139
Query: 124 INFIESEALSVLDQL 138
+ +I A S L+ L
Sbjct: 140 LVYISHRAFSGLNSL 154
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 199 LRGGRQATLDLNRSLADDPRIQLSHV 224
L+ RQA LDL + DP + +SHV
Sbjct: 97 LQPYRQALLDLEQEFLGDPHLSISHV 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,791,484
Number of Sequences: 62578
Number of extensions: 277864
Number of successful extensions: 807
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 40
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)