Query 026547
Match_columns 237
No_of_seqs 200 out of 3126
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02589 caffeoyl-CoA O-methyl 100.0 1.1E-40 2.3E-45 270.8 26.0 223 14-236 23-246 (247)
2 PF01596 Methyltransf_3: O-met 100.0 7.8E-41 1.7E-45 265.1 22.4 199 32-236 6-205 (205)
3 PLN02476 O-methyltransferase 100.0 2.7E-39 6E-44 265.5 26.3 216 12-236 63-278 (278)
4 PLN02781 Probable caffeoyl-CoA 100.0 3.8E-39 8.3E-44 261.8 26.2 221 16-237 12-234 (234)
5 COG4122 Predicted O-methyltran 100.0 1.3E-38 2.8E-43 252.2 23.9 215 12-237 4-219 (219)
6 KOG1663 O-methyltransferase [S 100.0 4.1E-36 8.9E-41 235.0 22.4 222 13-236 14-237 (237)
7 PF12847 Methyltransf_18: Meth 99.8 1.4E-18 3E-23 125.4 10.3 104 70-181 1-111 (112)
8 COG2242 CobL Precorrin-6B meth 99.8 1.5E-16 3.3E-21 122.1 17.4 118 56-183 20-137 (187)
9 PRK13944 protein-L-isoaspartat 99.7 3.9E-17 8.4E-22 130.5 14.1 116 56-181 58-173 (205)
10 PRK04457 spermidine synthase; 99.7 6.5E-16 1.4E-20 127.7 18.3 118 56-180 52-176 (262)
11 COG2518 Pcm Protein-L-isoaspar 99.7 1.1E-16 2.4E-21 125.5 12.0 119 48-180 50-168 (209)
12 TIGR02469 CbiT precorrin-6Y C5 99.7 3.1E-16 6.7E-21 114.8 13.2 112 62-181 11-122 (124)
13 PRK08287 cobalt-precorrin-6Y C 99.7 7.6E-16 1.6E-20 121.3 16.1 117 55-182 16-132 (187)
14 TIGR00080 pimt protein-L-isoas 99.7 3.7E-16 8E-21 125.8 14.0 154 13-180 18-176 (215)
15 PRK00377 cbiT cobalt-precorrin 99.7 5.4E-16 1.2E-20 123.3 14.7 112 66-183 36-147 (198)
16 TIGR00138 gidB 16S rRNA methyl 99.7 7.9E-16 1.7E-20 120.4 14.7 102 68-180 40-141 (181)
17 PRK13942 protein-L-isoaspartat 99.7 4.2E-16 9.1E-21 125.1 13.5 118 52-180 58-175 (212)
18 COG2226 UbiE Methylase involve 99.7 3.7E-16 8.1E-21 125.9 13.1 117 59-184 40-159 (238)
19 PRK00107 gidB 16S rRNA methylt 99.7 8.7E-16 1.9E-20 120.5 13.0 101 70-181 45-145 (187)
20 PF01209 Ubie_methyltran: ubiE 99.7 4.2E-16 9.1E-21 126.5 11.6 114 62-183 39-155 (233)
21 PLN03075 nicotianamine synthas 99.7 7E-16 1.5E-20 127.9 12.3 120 55-182 109-234 (296)
22 PRK07402 precorrin-6B methylas 99.7 3.3E-15 7.1E-20 118.6 15.5 124 50-182 20-143 (196)
23 PRK00121 trmB tRNA (guanine-N( 99.7 8.5E-16 1.9E-20 122.4 11.7 135 36-180 10-155 (202)
24 PRK14901 16S rRNA methyltransf 99.7 4.3E-15 9.3E-20 131.3 16.9 162 56-237 238-432 (434)
25 COG2519 GCD14 tRNA(1-methylade 99.7 2.1E-15 4.5E-20 120.8 12.5 122 52-183 76-197 (256)
26 PRK14903 16S rRNA methyltransf 99.6 1E-14 2.2E-19 128.6 17.9 125 53-184 220-369 (431)
27 PF13847 Methyltransf_31: Meth 99.6 2.2E-15 4.8E-20 114.7 11.2 108 69-183 2-112 (152)
28 PF01135 PCMT: Protein-L-isoas 99.6 1.7E-15 3.7E-20 120.7 10.2 117 52-179 54-170 (209)
29 PRK14902 16S rRNA methyltransf 99.6 1.7E-14 3.6E-19 128.1 17.4 125 53-184 233-382 (444)
30 COG2230 Cfa Cyclopropane fatty 99.6 4E-15 8.7E-20 122.1 12.4 120 53-184 52-179 (283)
31 TIGR00446 nop2p NOL1/NOP2/sun 99.6 3.9E-14 8.5E-19 117.4 18.3 122 55-184 56-202 (264)
32 PF05175 MTS: Methyltransferas 99.6 9.5E-15 2.1E-19 113.3 11.8 110 60-179 21-138 (170)
33 PLN02233 ubiquinone biosynthes 99.6 1.6E-14 3.5E-19 119.5 13.8 113 64-183 67-184 (261)
34 PRK11036 putative S-adenosyl-L 99.6 1.1E-14 2.5E-19 120.1 12.7 103 69-180 43-148 (255)
35 TIGR02752 MenG_heptapren 2-hep 99.6 2.4E-14 5.2E-19 116.4 14.3 113 62-182 37-152 (231)
36 PF02353 CMAS: Mycolic acid cy 99.6 5.9E-15 1.3E-19 122.4 10.7 109 66-186 58-171 (273)
37 PRK14904 16S rRNA methyltransf 99.6 5.2E-14 1.1E-18 124.8 17.3 121 55-184 235-380 (445)
38 TIGR00563 rsmB ribosomal RNA s 99.6 4.2E-14 9.2E-19 124.8 16.6 124 55-184 223-371 (426)
39 TIGR00091 tRNA (guanine-N(7)-) 99.6 7.1E-14 1.5E-18 110.7 15.8 106 69-180 15-131 (194)
40 PRK00811 spermidine synthase; 99.6 6.7E-14 1.5E-18 117.0 16.3 106 68-180 74-190 (283)
41 PRK00312 pcm protein-L-isoaspa 99.6 3.9E-14 8.5E-19 113.7 14.4 114 53-180 61-174 (212)
42 PF08704 GCD14: tRNA methyltra 99.6 2.3E-14 5E-19 116.5 13.0 131 43-181 13-146 (247)
43 TIGR03533 L3_gln_methyl protei 99.6 1.2E-13 2.5E-18 115.6 17.6 119 54-181 101-251 (284)
44 PRK10901 16S rRNA methyltransf 99.6 7.1E-14 1.5E-18 123.4 17.1 123 54-184 228-375 (427)
45 PF07279 DUF1442: Protein of u 99.6 9.9E-14 2.1E-18 108.6 14.9 156 55-235 26-186 (218)
46 PF13659 Methyltransf_26: Meth 99.6 2.7E-14 5.9E-19 103.7 10.9 102 71-179 1-113 (117)
47 PF13578 Methyltransf_24: Meth 99.6 2.6E-15 5.6E-20 107.4 5.1 102 75-182 1-106 (106)
48 PLN02244 tocopherol O-methyltr 99.6 4.8E-14 1E-18 120.9 13.5 106 69-183 117-225 (340)
49 PRK01581 speE spermidine synth 99.6 1.3E-13 2.9E-18 117.0 15.6 109 66-181 146-268 (374)
50 COG4123 Predicted O-methyltran 99.6 4.4E-14 9.5E-19 114.1 11.3 118 56-179 30-168 (248)
51 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.7E-14 1.4E-18 115.0 12.3 106 69-183 55-166 (247)
52 TIGR00740 methyltransferase, p 99.5 1.6E-13 3.4E-18 112.2 13.9 107 69-184 52-164 (239)
53 PRK11805 N5-glutamine S-adenos 99.5 1.1E-13 2.4E-18 116.9 13.2 117 55-180 114-262 (307)
54 PRK11873 arsM arsenite S-adeno 99.5 1.2E-13 2.6E-18 115.0 13.0 113 66-186 73-188 (272)
55 COG2227 UbiG 2-polyprenyl-3-me 99.5 6.1E-14 1.3E-18 111.6 9.9 116 56-183 42-163 (243)
56 PRK11207 tellurite resistance 99.5 1.3E-13 2.8E-18 109.5 11.7 101 67-179 27-132 (197)
57 smart00828 PKS_MT Methyltransf 99.5 7.1E-14 1.5E-18 113.1 10.2 103 72-183 1-106 (224)
58 PLN02396 hexaprenyldihydroxybe 99.5 1E-13 2.3E-18 117.3 11.5 104 70-183 131-237 (322)
59 TIGR00477 tehB tellurite resis 99.5 1.9E-13 4.1E-18 108.3 12.1 103 65-180 25-132 (195)
60 PRK15128 23S rRNA m(5)C1962 me 99.5 2.8E-13 6.2E-18 117.8 14.0 111 67-182 217-340 (396)
61 PF08241 Methyltransf_11: Meth 99.5 7.7E-14 1.7E-18 97.0 8.6 92 75-179 1-95 (95)
62 PRK13943 protein-L-isoaspartat 99.5 2.5E-13 5.4E-18 114.9 13.2 115 55-180 65-179 (322)
63 PRK01683 trans-aconitate 2-met 99.5 1.8E-13 4E-18 113.0 11.2 99 67-180 28-129 (258)
64 TIGR00406 prmA ribosomal prote 99.5 2.8E-13 6.1E-18 113.7 12.4 104 69-183 158-261 (288)
65 TIGR00417 speE spermidine synt 99.5 1.5E-12 3.2E-17 108.3 16.5 106 68-180 70-185 (270)
66 PF13649 Methyltransf_25: Meth 99.5 7.2E-14 1.6E-18 99.0 7.4 93 74-175 1-101 (101)
67 PLN02366 spermidine synthase 99.5 4.1E-13 9E-18 113.0 13.1 108 68-181 89-206 (308)
68 TIGR00537 hemK_rel_arch HemK-r 99.5 1.3E-12 2.9E-17 102.1 14.8 108 60-181 9-140 (179)
69 COG4106 Tam Trans-aconitate me 99.5 1.3E-13 2.9E-18 107.5 8.9 102 65-181 25-129 (257)
70 TIGR00536 hemK_fam HemK family 99.5 5.8E-13 1.3E-17 111.6 13.4 118 56-182 96-245 (284)
71 PRK04266 fibrillarin; Provisio 99.5 3.7E-13 8E-18 108.8 11.6 118 58-184 58-178 (226)
72 PRK15001 SAM-dependent 23S rib 99.5 4.4E-13 9.6E-18 115.5 12.7 102 70-180 228-339 (378)
73 PRK14103 trans-aconitate 2-met 99.5 2.1E-13 4.6E-18 112.5 10.4 97 67-180 26-125 (255)
74 PRK10909 rsmD 16S rRNA m(2)G96 99.5 2E-12 4.3E-17 102.4 15.0 119 54-181 37-159 (199)
75 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.1E-12 2.3E-17 112.8 14.1 103 70-179 122-233 (390)
76 COG2264 PrmA Ribosomal protein 99.5 4.3E-13 9.3E-18 111.1 10.9 126 46-183 140-265 (300)
77 TIGR02716 C20_methyl_CrtF C-20 99.5 5.6E-13 1.2E-17 112.9 11.9 111 64-185 143-258 (306)
78 PRK08317 hypothetical protein; 99.5 5.2E-12 1.1E-16 102.6 16.3 115 63-186 12-129 (241)
79 PRK11783 rlmL 23S rRNA m(2)G24 99.5 8.3E-13 1.8E-17 123.0 12.8 111 65-183 533-658 (702)
80 PTZ00098 phosphoethanolamine N 99.5 1E-12 2.2E-17 108.9 12.0 107 66-184 48-159 (263)
81 PRK00517 prmA ribosomal protei 99.4 6E-12 1.3E-16 103.6 16.3 107 60-183 108-215 (250)
82 PF05401 NodS: Nodulation prot 99.4 6.9E-13 1.5E-17 102.9 9.9 124 45-182 15-147 (201)
83 PRK11088 rrmA 23S rRNA methylt 99.4 3.1E-12 6.6E-17 106.6 14.4 147 15-180 29-180 (272)
84 PLN02823 spermine synthase 99.4 1.4E-12 3E-17 111.0 12.4 106 68-180 101-219 (336)
85 PRK12335 tellurite resistance 99.4 1.1E-12 2.3E-17 110.2 11.6 99 68-179 118-221 (287)
86 COG1092 Predicted SAM-dependen 99.4 1.4E-12 3.1E-17 112.3 12.4 114 65-184 212-339 (393)
87 PRK15068 tRNA mo(5)U34 methylt 99.4 1.3E-12 2.9E-17 111.1 12.1 109 68-186 120-231 (322)
88 PF03848 TehB: Tellurite resis 99.4 1.6E-12 3.4E-17 101.8 11.0 104 66-182 26-134 (192)
89 TIGR03534 RF_mod_PrmC protein- 99.4 4E-12 8.6E-17 104.4 13.9 116 56-181 71-217 (251)
90 PRK14968 putative methyltransf 99.4 3.5E-12 7.6E-17 100.1 13.0 110 60-180 13-147 (188)
91 PRK10258 biotin biosynthesis p 99.4 1.8E-12 3.9E-17 106.7 11.8 111 56-182 28-141 (251)
92 PRK00216 ubiE ubiquinone/menaq 99.4 2.1E-12 4.6E-17 105.1 12.0 109 67-182 48-159 (239)
93 PRK06922 hypothetical protein; 99.4 2.6E-12 5.7E-17 116.0 13.3 114 63-184 411-540 (677)
94 TIGR00095 RNA methyltransferas 99.4 1.3E-11 2.7E-16 97.3 15.6 121 56-181 35-159 (189)
95 PRK01544 bifunctional N5-gluta 99.4 3.4E-12 7.3E-17 114.7 13.7 101 71-180 139-268 (506)
96 TIGR03587 Pse_Me-ase pseudamin 99.4 5.5E-12 1.2E-16 100.5 13.0 104 65-185 38-146 (204)
97 PF06325 PrmA: Ribosomal prote 99.4 6.5E-13 1.4E-17 110.9 7.7 102 69-183 160-261 (295)
98 PRK14967 putative methyltransf 99.4 7.7E-12 1.7E-16 101.2 13.7 101 68-180 34-158 (223)
99 TIGR00452 methyltransferase, p 99.4 3.6E-12 7.9E-17 107.5 12.1 109 68-186 119-230 (314)
100 PRK09489 rsmC 16S ribosomal RN 99.4 4.2E-12 9E-17 108.7 12.0 112 55-179 182-301 (342)
101 PLN02336 phosphoethanolamine N 99.4 5.3E-12 1.2E-16 113.1 13.0 107 67-184 263-372 (475)
102 PF08242 Methyltransf_12: Meth 99.4 1.4E-13 3E-18 97.1 2.1 96 75-177 1-99 (99)
103 PF03602 Cons_hypoth95: Conser 99.4 1.4E-11 3.1E-16 96.3 13.6 125 52-181 23-153 (183)
104 TIGR03704 PrmC_rel_meth putati 99.4 1.1E-11 2.4E-16 101.9 13.4 100 71-180 87-215 (251)
105 PRK03612 spermidine synthase; 99.4 5E-12 1.1E-16 114.1 12.2 107 68-181 295-415 (521)
106 TIGR01177 conserved hypothetic 99.4 5.7E-12 1.2E-16 107.8 12.0 117 53-180 165-293 (329)
107 PRK11933 yebU rRNA (cytosine-C 99.4 5.3E-11 1.2E-15 105.5 18.1 123 55-184 96-245 (470)
108 TIGR02072 BioC biotin biosynth 99.4 9.2E-12 2E-16 101.2 12.2 102 69-183 33-137 (240)
109 PRK09328 N5-glutamine S-adenos 99.4 1.1E-11 2.4E-16 103.2 12.9 115 56-180 91-237 (275)
110 PF10672 Methyltrans_SAM: S-ad 99.4 1.3E-11 2.8E-16 102.6 12.6 111 66-182 119-239 (286)
111 COG0421 SpeE Spermidine syntha 99.4 4.6E-11 9.9E-16 99.2 15.7 106 69-181 75-190 (282)
112 KOG1270 Methyltransferases [Co 99.3 1.4E-12 3E-17 104.7 6.2 100 71-183 90-197 (282)
113 PRK05134 bifunctional 3-demeth 99.3 4.3E-11 9.4E-16 97.4 15.1 116 56-182 34-152 (233)
114 PRK11705 cyclopropane fatty ac 99.3 1.2E-11 2.6E-16 107.5 12.6 101 67-183 164-269 (383)
115 PRK14966 unknown domain/N5-glu 99.3 2.2E-11 4.7E-16 105.5 13.6 118 54-180 234-380 (423)
116 PRK03522 rumB 23S rRNA methylu 99.3 2.9E-11 6.3E-16 102.8 14.1 102 69-180 172-273 (315)
117 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 2.1E-11 4.6E-16 98.1 12.5 107 67-183 36-145 (223)
118 TIGR03840 TMPT_Se_Te thiopurin 99.3 9E-12 2E-16 99.9 10.2 102 70-183 34-154 (213)
119 COG2813 RsmC 16S RNA G1207 met 99.3 1.4E-11 2.9E-16 101.7 11.3 114 54-179 143-264 (300)
120 KOG4300 Predicted methyltransf 99.3 8.1E-12 1.8E-16 96.9 9.1 115 58-181 61-182 (252)
121 KOG1540 Ubiquinone biosynthesi 99.3 2.3E-11 5E-16 97.3 11.6 107 67-180 97-213 (296)
122 PF02390 Methyltransf_4: Putat 99.3 3.3E-11 7.2E-16 95.3 12.6 102 73-180 20-132 (195)
123 COG0220 Predicted S-adenosylme 99.3 5.1E-11 1.1E-15 95.9 13.5 104 71-180 49-163 (227)
124 PLN02490 MPBQ/MSBQ methyltrans 99.3 2.7E-11 5.8E-16 103.2 12.6 100 70-181 113-215 (340)
125 PTZ00146 fibrillarin; Provisio 99.3 2.6E-11 5.6E-16 100.5 12.1 106 68-180 130-236 (293)
126 PF01564 Spermine_synth: Sperm 99.3 2.2E-11 4.8E-16 99.8 11.3 107 68-181 74-191 (246)
127 TIGR02021 BchM-ChlM magnesium 99.3 4.1E-11 9E-16 96.6 12.7 101 68-181 53-158 (219)
128 TIGR03438 probable methyltrans 99.3 4.9E-11 1.1E-15 100.7 13.7 110 70-181 63-177 (301)
129 COG2890 HemK Methylase of poly 99.3 2.5E-11 5.3E-16 101.2 11.5 117 55-182 93-239 (280)
130 TIGR00479 rumA 23S rRNA (uraci 99.3 8.6E-11 1.9E-15 104.1 15.0 105 68-180 290-395 (431)
131 PLN02336 phosphoethanolamine N 99.3 4.2E-11 9.1E-16 107.4 13.2 110 64-184 31-145 (475)
132 PRK13168 rumA 23S rRNA m(5)U19 99.3 8.1E-11 1.7E-15 104.5 14.7 105 68-180 295-399 (443)
133 PF13489 Methyltransf_23: Meth 99.3 4.1E-11 8.9E-16 91.4 11.0 107 56-183 7-117 (161)
134 PRK11188 rrmJ 23S rRNA methylt 99.3 5.7E-11 1.2E-15 95.1 11.9 101 68-181 49-165 (209)
135 PRK13255 thiopurine S-methyltr 99.3 4.2E-11 9E-16 96.4 11.2 113 54-179 22-153 (218)
136 smart00138 MeTrc Methyltransfe 99.3 1.1E-10 2.4E-15 96.7 13.1 106 70-182 99-243 (264)
137 PRK07580 Mg-protoporphyrin IX 99.3 1.5E-10 3.2E-15 93.9 13.2 98 69-179 62-164 (230)
138 TIGR01983 UbiG ubiquinone bios 99.2 1.8E-10 3.8E-15 93.1 13.3 103 70-182 45-150 (224)
139 TIGR02085 meth_trns_rumB 23S r 99.2 2.8E-10 6E-15 98.9 15.2 119 51-180 210-333 (374)
140 COG0144 Sun tRNA and rRNA cyto 99.2 4.1E-10 8.9E-15 97.0 16.1 130 50-184 136-291 (355)
141 smart00650 rADc Ribosomal RNA 99.2 3.2E-11 6.8E-16 93.5 8.3 114 66-192 9-124 (169)
142 PF08003 Methyltransf_9: Prote 99.2 1.1E-10 2.4E-15 96.3 11.5 110 67-186 112-224 (315)
143 COG0742 N6-adenine-specific me 99.2 4.1E-10 8.8E-15 87.2 13.8 125 52-182 24-155 (187)
144 PRK06202 hypothetical protein; 99.2 6.4E-11 1.4E-15 96.4 9.6 114 58-184 48-169 (232)
145 KOG1271 Methyltransferases [Ge 99.2 4E-11 8.6E-16 91.3 7.6 107 70-184 67-184 (227)
146 PHA03411 putative methyltransf 99.2 1.2E-10 2.6E-15 95.6 10.7 98 68-180 62-182 (279)
147 TIGR00438 rrmJ cell division p 99.2 1.9E-10 4.2E-15 90.6 11.4 107 61-180 23-145 (188)
148 KOG2904 Predicted methyltransf 99.2 1.5E-10 3.4E-15 93.5 10.7 123 53-182 125-286 (328)
149 PF02475 Met_10: Met-10+ like- 99.2 1.5E-10 3.3E-15 91.5 10.6 114 56-179 87-200 (200)
150 COG3963 Phospholipid N-methylt 99.2 3E-10 6.4E-15 85.4 11.1 120 52-179 30-154 (194)
151 PRK05785 hypothetical protein; 99.2 2.8E-10 6.1E-15 92.2 11.9 97 61-175 41-141 (226)
152 cd02440 AdoMet_MTases S-adenos 99.2 3.2E-10 6.9E-15 79.0 10.8 99 73-180 1-103 (107)
153 PRK05031 tRNA (uracil-5-)-meth 99.1 2.4E-09 5.2E-14 92.6 15.1 122 52-180 185-319 (362)
154 PRK04338 N(2),N(2)-dimethylgua 99.1 1.7E-09 3.6E-14 94.0 14.1 100 71-180 58-157 (382)
155 PF05891 Methyltransf_PK: AdoM 99.1 3.3E-10 7.2E-15 89.5 8.7 137 70-223 55-198 (218)
156 PRK00536 speE spermidine synth 99.1 1.5E-09 3.3E-14 89.2 12.7 101 66-181 68-171 (262)
157 PF04989 CmcI: Cephalosporin h 99.1 9.8E-10 2.1E-14 86.5 10.6 164 55-222 17-186 (206)
158 KOG2899 Predicted methyltransf 99.1 4.3E-10 9.3E-15 89.4 8.6 110 68-184 56-212 (288)
159 PLN02672 methionine S-methyltr 99.1 2.3E-09 4.9E-14 102.7 14.4 95 53-154 97-210 (1082)
160 PHA03412 putative methyltransf 99.1 2.9E-09 6.4E-14 85.6 12.8 114 54-183 35-165 (241)
161 PF10294 Methyltransf_16: Puta 99.1 2.1E-09 4.6E-14 83.5 11.4 109 67-181 42-156 (173)
162 KOG2915 tRNA(1-methyladenosine 99.1 1.7E-09 3.7E-14 87.4 11.0 115 55-176 90-204 (314)
163 PF09445 Methyltransf_15: RNA 99.1 4.1E-10 9E-15 85.8 7.1 77 72-155 1-77 (163)
164 COG4976 Predicted methyltransf 99.1 2.5E-10 5.4E-15 90.1 6.0 145 71-237 126-287 (287)
165 TIGR02143 trmA_only tRNA (urac 99.1 5.7E-09 1.2E-13 90.0 15.0 122 52-180 176-310 (353)
166 COG2265 TrmA SAM-dependent met 99.1 3.9E-09 8.5E-14 92.8 14.0 122 50-180 269-395 (432)
167 PLN02585 magnesium protoporphy 99.1 2.9E-09 6.3E-14 90.1 12.7 96 70-179 144-248 (315)
168 KOG1661 Protein-L-isoaspartate 99.1 1.1E-09 2.5E-14 85.3 9.2 112 58-179 69-191 (237)
169 PRK13256 thiopurine S-methyltr 99.1 3.9E-09 8.5E-14 84.9 12.5 130 47-184 21-166 (226)
170 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.0 1.4E-08 2.9E-13 85.0 15.8 127 52-184 67-222 (283)
171 PF01170 UPF0020: Putative RNA 99.0 5.4E-09 1.2E-13 81.7 12.4 122 52-180 10-150 (179)
172 PTZ00338 dimethyladenosine tra 99.0 4.3E-09 9.3E-14 88.3 12.5 98 48-158 15-112 (294)
173 PF05724 TPMT: Thiopurine S-me 99.0 3.8E-09 8.3E-14 84.9 11.7 127 48-184 16-158 (218)
174 PF06080 DUF938: Protein of un 99.0 3E-09 6.5E-14 83.6 10.3 130 55-185 8-145 (204)
175 TIGR00308 TRM1 tRNA(guanine-26 99.0 6.6E-09 1.4E-13 89.8 13.4 101 72-180 46-146 (374)
176 COG2520 Predicted methyltransf 99.0 4.8E-09 1E-13 88.9 11.3 122 52-183 170-291 (341)
177 PF07021 MetW: Methionine bios 99.0 1.3E-09 2.8E-14 84.6 7.2 98 69-182 12-112 (193)
178 COG2521 Predicted archaeal met 99.0 2.2E-09 4.9E-14 85.0 8.0 105 67-179 131-243 (287)
179 COG2263 Predicted RNA methylas 99.0 9.6E-09 2.1E-13 79.1 11.0 88 69-170 44-136 (198)
180 PF02527 GidB: rRNA small subu 99.0 7.9E-09 1.7E-13 80.8 10.7 96 73-179 51-146 (184)
181 PRK00050 16S rRNA m(4)C1402 me 98.9 6.5E-09 1.4E-13 86.9 9.9 94 59-159 9-102 (296)
182 PF00891 Methyltransf_2: O-met 98.9 4.9E-09 1.1E-13 85.8 9.0 104 62-184 92-202 (241)
183 PF05185 PRMT5: PRMT5 arginine 98.9 8.9E-09 1.9E-13 91.1 11.1 104 71-182 187-298 (448)
184 PRK14896 ksgA 16S ribosomal RN 98.9 1.4E-08 3.1E-13 83.9 11.7 94 48-157 8-101 (258)
185 PRK11727 23S rRNA mA1618 methy 98.9 1.8E-08 3.9E-13 85.2 11.4 83 70-156 114-198 (321)
186 COG1041 Predicted DNA modifica 98.9 2.2E-08 4.8E-13 84.4 10.9 119 52-181 179-310 (347)
187 PRK00274 ksgA 16S ribosomal RN 98.9 2.9E-08 6.4E-13 82.7 11.6 101 54-168 26-126 (272)
188 KOG2730 Methylase [General fun 98.9 7.4E-09 1.6E-13 81.3 7.2 86 65-156 89-174 (263)
189 KOG1499 Protein arginine N-met 98.9 9.8E-09 2.1E-13 86.1 8.3 105 68-182 58-168 (346)
190 PRK01544 bifunctional N5-gluta 98.9 3.5E-08 7.6E-13 88.9 12.4 104 70-180 347-461 (506)
191 TIGR00755 ksgA dimethyladenosi 98.9 3.8E-08 8.2E-13 81.2 11.5 101 54-169 13-116 (253)
192 KOG3191 Predicted N6-DNA-methy 98.8 4.4E-08 9.5E-13 74.8 10.7 104 70-183 43-170 (209)
193 TIGR02081 metW methionine bios 98.8 1.4E-08 3E-13 80.4 8.2 90 69-173 12-104 (194)
194 PF12147 Methyltransf_20: Puta 98.8 1.3E-07 2.8E-12 77.7 13.3 121 64-188 129-256 (311)
195 KOG2361 Predicted methyltransf 98.8 7.9E-09 1.7E-13 82.3 5.7 105 73-182 74-184 (264)
196 KOG3010 Methyltransferase [Gen 98.8 6.7E-09 1.5E-13 82.7 4.8 113 59-181 21-137 (261)
197 KOG1541 Predicted protein carb 98.8 2.2E-08 4.7E-13 78.8 7.3 95 71-180 51-159 (270)
198 COG0357 GidB Predicted S-adeno 98.8 4.1E-08 8.8E-13 78.2 9.0 98 71-179 68-166 (215)
199 COG4262 Predicted spermidine s 98.7 2.1E-07 4.5E-12 78.5 12.1 108 68-182 287-408 (508)
200 PRK04148 hypothetical protein; 98.7 1.9E-07 4.2E-12 68.7 9.9 95 59-170 5-100 (134)
201 PF03059 NAS: Nicotianamine sy 98.7 1.6E-07 3.5E-12 77.6 9.2 105 71-182 121-231 (276)
202 COG0030 KsgA Dimethyladenosine 98.6 7.6E-07 1.7E-11 72.8 12.8 108 48-168 9-116 (259)
203 PF05958 tRNA_U5-meth_tr: tRNA 98.6 3.8E-07 8.2E-12 78.7 11.7 115 50-168 173-300 (352)
204 PF03291 Pox_MCEL: mRNA cappin 98.6 2.4E-07 5.1E-12 79.0 9.6 108 70-181 62-186 (331)
205 KOG3420 Predicted RNA methylas 98.6 1.2E-07 2.7E-12 69.8 6.3 92 69-171 47-143 (185)
206 PLN02232 ubiquinone biosynthes 98.6 2.9E-07 6.3E-12 70.6 7.9 78 99-183 1-83 (160)
207 TIGR00478 tly hemolysin TlyA f 98.6 1.9E-07 4.1E-12 75.5 6.9 94 69-179 74-169 (228)
208 KOG2187 tRNA uracil-5-methyltr 98.5 5.6E-07 1.2E-11 79.0 9.5 124 50-179 359-488 (534)
209 KOG1500 Protein arginine N-met 98.5 4.2E-07 9.2E-12 75.8 8.0 99 69-178 176-279 (517)
210 KOG0820 Ribosomal RNA adenine 98.5 1.5E-06 3.3E-11 70.6 10.8 90 56-157 44-133 (315)
211 PF05219 DREV: DREV methyltran 98.5 3.6E-06 7.9E-11 68.4 13.0 133 70-223 94-237 (265)
212 PRK10611 chemotaxis methyltran 98.5 1.9E-06 4E-11 72.0 10.5 164 6-181 55-262 (287)
213 KOG1975 mRNA cap methyltransfe 98.4 1.6E-06 3.4E-11 72.1 9.6 116 60-179 105-235 (389)
214 PF04816 DUF633: Family of unk 98.4 2.2E-06 4.7E-11 68.2 9.4 99 74-180 1-100 (205)
215 TIGR00006 S-adenosyl-methyltra 98.4 5.1E-06 1.1E-10 69.8 11.7 95 59-159 10-104 (305)
216 KOG1562 Spermidine synthase [A 98.4 4.2E-06 9E-11 68.9 10.7 150 66-234 117-281 (337)
217 PRK10742 putative methyltransf 98.4 3.3E-06 7.1E-11 68.5 10.0 88 60-156 76-173 (250)
218 PF05711 TylF: Macrocin-O-meth 98.4 1.2E-06 2.5E-11 71.5 7.2 126 54-184 54-215 (248)
219 KOG1122 tRNA and rRNA cytosine 98.4 6E-06 1.3E-10 71.0 11.7 111 68-184 239-374 (460)
220 PF08123 DOT1: Histone methyla 98.4 2.9E-06 6.3E-11 67.5 9.3 113 64-183 36-160 (205)
221 PRK11783 rlmL 23S rRNA m(2)G24 98.4 3.2E-06 7E-11 79.3 11.0 99 53-156 172-312 (702)
222 PF02384 N6_Mtase: N-6 DNA Met 98.4 6.4E-06 1.4E-10 69.9 11.8 125 50-179 26-181 (311)
223 KOG1709 Guanidinoacetate methy 98.3 1.4E-05 3E-10 63.0 11.4 107 69-184 100-209 (271)
224 COG0116 Predicted N6-adenine-s 98.3 6.6E-06 1.4E-10 70.6 10.5 121 53-180 174-343 (381)
225 PF06962 rRNA_methylase: Putat 98.3 1.2E-06 2.5E-11 65.0 4.8 111 97-224 1-123 (140)
226 PF01269 Fibrillarin: Fibrilla 98.3 9E-06 1.9E-10 64.7 10.0 107 67-180 70-177 (229)
227 PF13679 Methyltransf_32: Meth 98.3 6.5E-06 1.4E-10 61.7 8.6 75 59-133 10-93 (141)
228 PF01728 FtsJ: FtsJ-like methy 98.2 1.7E-06 3.7E-11 67.6 5.2 100 70-181 23-139 (181)
229 PF00398 RrnaAD: Ribosomal RNA 98.2 8E-06 1.7E-10 67.7 9.1 133 48-191 9-144 (262)
230 TIGR01444 fkbM_fam methyltrans 98.2 4.5E-06 9.9E-11 62.4 7.1 59 73-133 1-59 (143)
231 COG1352 CheR Methylase of chem 98.2 2.3E-05 5E-10 64.8 11.4 105 70-181 96-241 (268)
232 COG0293 FtsJ 23S rRNA methylas 98.2 3.7E-05 7.9E-10 60.7 11.0 111 59-182 34-160 (205)
233 PF01739 CheR: CheR methyltran 98.1 3.1E-06 6.8E-11 66.9 4.6 106 70-182 31-176 (196)
234 COG4076 Predicted RNA methylas 98.1 7.9E-06 1.7E-10 63.0 6.4 99 72-183 34-137 (252)
235 TIGR03439 methyl_EasF probable 98.1 0.00021 4.6E-09 60.7 15.4 123 56-179 57-195 (319)
236 PF02005 TRM: N2,N2-dimethylgu 98.1 2E-05 4.4E-10 68.4 9.0 106 70-182 49-155 (377)
237 TIGR02987 met_A_Alw26 type II 98.0 3.5E-05 7.5E-10 70.2 10.2 99 54-155 8-120 (524)
238 COG0275 Predicted S-adenosylme 98.0 0.00011 2.4E-09 61.0 11.8 89 67-159 20-108 (314)
239 COG2384 Predicted SAM-dependen 98.0 8.4E-05 1.8E-09 58.9 10.4 112 60-179 5-118 (226)
240 KOG3115 Methyltransferase-like 98.0 4.8E-05 1E-09 59.5 8.8 105 70-179 60-181 (249)
241 KOG3178 Hydroxyindole-O-methyl 98.0 4.8E-05 1E-09 64.3 9.4 95 71-183 178-277 (342)
242 PF05148 Methyltransf_8: Hypot 98.0 7.1E-05 1.5E-09 59.1 9.2 105 48-183 54-160 (219)
243 PF09243 Rsm22: Mitochondrial 97.9 0.00012 2.5E-09 61.2 10.4 106 69-183 32-142 (274)
244 COG3510 CmcI Cephalosporin hyd 97.9 0.00017 3.8E-09 55.9 10.2 127 55-188 54-187 (237)
245 PF01795 Methyltransf_5: MraW 97.9 7.5E-05 1.6E-09 62.8 8.2 95 60-159 11-105 (310)
246 PF01861 DUF43: Protein of unk 97.9 0.0018 3.9E-08 52.4 15.7 133 69-225 43-178 (243)
247 COG1889 NOP1 Fibrillarin-like 97.8 0.00024 5.2E-09 55.6 10.0 116 56-179 60-178 (231)
248 KOG2352 Predicted spermine/spe 97.8 4.8E-05 1E-09 66.9 6.6 115 70-186 295-421 (482)
249 PRK11760 putative 23S rRNA C24 97.8 0.00019 4E-09 61.0 9.4 87 69-174 210-296 (357)
250 COG0500 SmtA SAM-dependent met 97.7 0.0006 1.3E-08 50.3 10.2 104 74-185 52-159 (257)
251 KOG2940 Predicted methyltransf 97.6 6.3E-05 1.4E-09 60.0 4.2 98 71-180 73-173 (325)
252 KOG4058 Uncharacterized conser 97.6 0.0004 8.8E-09 51.6 7.7 123 47-180 49-171 (199)
253 PRK01747 mnmC bifunctional tRN 97.6 0.00053 1.1E-08 64.3 10.5 104 71-180 58-205 (662)
254 PF03141 Methyltransf_29: Puta 97.6 8.5E-05 1.9E-09 65.6 4.5 99 71-183 118-221 (506)
255 KOG3045 Predicted RNA methylas 97.5 0.00092 2E-08 54.4 9.6 97 58-183 168-266 (325)
256 PHA01634 hypothetical protein 97.5 0.00033 7.2E-09 50.7 6.3 74 70-156 28-101 (156)
257 COG3897 Predicted methyltransf 97.5 0.00027 5.8E-09 55.1 6.2 73 68-154 77-149 (218)
258 PF04672 Methyltransf_19: S-ad 97.5 0.0036 7.7E-08 51.6 13.0 170 11-184 8-193 (267)
259 COG1189 Predicted rRNA methyla 97.5 0.00029 6.3E-09 56.6 6.3 113 54-179 60-176 (245)
260 KOG1269 SAM-dependent methyltr 97.5 0.00031 6.6E-09 60.7 6.7 106 69-183 109-217 (364)
261 KOG1253 tRNA methyltransferase 97.5 0.00011 2.3E-09 64.6 3.8 115 64-182 103-217 (525)
262 PF05971 Methyltransf_10: Prot 97.4 0.00035 7.7E-09 58.5 6.5 81 72-156 104-186 (299)
263 PF07942 N2227: N2227-like pro 97.4 0.001 2.2E-08 55.1 9.0 105 71-183 57-204 (270)
264 KOG0024 Sorbitol dehydrogenase 97.4 0.0016 3.4E-08 54.7 9.9 108 66-181 165-273 (354)
265 COG1867 TRM1 N2,N2-dimethylgua 97.4 0.0025 5.4E-08 54.4 10.9 103 71-182 53-155 (380)
266 PF04445 SAM_MT: Putative SAM- 97.4 0.00041 9E-09 56.0 5.7 85 62-155 65-159 (234)
267 COG1064 AdhP Zn-dependent alco 97.3 0.0022 4.9E-08 54.7 10.0 98 66-183 162-261 (339)
268 KOG3201 Uncharacterized conser 97.3 0.00071 1.5E-08 51.2 6.1 107 68-180 27-139 (201)
269 COG4798 Predicted methyltransf 97.3 0.00059 1.3E-08 53.1 5.3 111 65-184 43-169 (238)
270 PF07091 FmrO: Ribosomal RNA m 97.3 0.0017 3.6E-08 52.9 8.1 87 57-154 91-178 (251)
271 KOG1501 Arginine N-methyltrans 97.1 0.0014 3E-08 57.1 6.2 59 73-133 69-127 (636)
272 KOG1596 Fibrillarin and relate 97.0 0.0052 1.1E-07 49.6 8.8 106 68-180 154-260 (317)
273 COG5459 Predicted rRNA methyla 97.0 0.0015 3.3E-08 55.4 6.0 107 69-180 112-224 (484)
274 KOG2198 tRNA cytosine-5-methyl 96.9 0.0066 1.4E-07 51.9 8.9 118 66-184 151-299 (375)
275 KOG2671 Putative RNA methylase 96.9 0.0019 4.1E-08 54.6 5.6 98 49-155 187-292 (421)
276 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.9 0.00064 1.4E-08 55.9 2.8 111 70-183 56-201 (256)
277 COG0286 HsdM Type I restrictio 96.9 0.024 5.3E-07 51.2 12.8 134 52-187 168-335 (489)
278 COG1063 Tdh Threonine dehydrog 96.9 0.0073 1.6E-07 52.2 9.0 102 70-183 168-271 (350)
279 KOG4589 Cell division protein 96.8 0.012 2.7E-07 45.7 8.6 103 69-186 68-187 (232)
280 KOG0822 Protein kinase inhibit 96.8 0.0057 1.2E-07 54.5 7.6 118 56-181 347-478 (649)
281 PF12692 Methyltransf_17: S-ad 96.7 0.024 5.2E-07 42.3 9.2 101 71-183 29-136 (160)
282 PF00107 ADH_zinc_N: Zinc-bind 96.6 0.0066 1.4E-07 44.2 5.8 91 80-183 1-91 (130)
283 KOG1227 Putative methyltransfe 96.5 0.0018 3.9E-08 53.7 2.6 104 69-182 193-298 (351)
284 PF11599 AviRa: RRNA methyltra 96.5 0.12 2.6E-06 41.2 12.5 108 70-181 51-214 (246)
285 COG4301 Uncharacterized conser 96.4 0.13 2.8E-06 42.0 12.0 120 55-179 59-191 (321)
286 KOG3987 Uncharacterized conser 96.3 0.00065 1.4E-08 53.5 -1.0 94 70-183 112-209 (288)
287 cd08283 FDH_like_1 Glutathione 96.2 0.06 1.3E-06 47.1 10.6 108 65-181 179-306 (386)
288 PF05430 Methyltransf_30: S-ad 96.0 0.015 3.3E-07 42.5 4.9 52 123-180 32-89 (124)
289 PF02254 TrkA_N: TrkA-N domain 95.9 0.026 5.6E-07 40.3 5.8 89 79-180 4-95 (116)
290 PRK09880 L-idonate 5-dehydroge 95.9 0.057 1.2E-06 46.3 8.8 99 69-182 168-267 (343)
291 PRK09424 pntA NAD(P) transhydr 95.7 0.1 2.2E-06 47.3 10.1 108 69-186 163-290 (509)
292 TIGR00027 mthyl_TIGR00027 meth 95.7 0.38 8.3E-06 39.8 12.6 111 70-183 81-199 (260)
293 PF03141 Methyltransf_29: Puta 95.6 0.02 4.3E-07 51.0 4.8 100 68-182 363-468 (506)
294 cd08254 hydroxyacyl_CoA_DH 6-h 95.5 0.16 3.5E-06 42.9 10.0 100 67-180 162-262 (338)
295 PF11968 DUF3321: Putative met 95.4 0.047 1E-06 43.6 5.9 80 72-176 53-139 (219)
296 KOG2651 rRNA adenine N-6-methy 95.4 0.063 1.4E-06 46.3 6.9 54 58-113 141-194 (476)
297 PRK11524 putative methyltransf 95.4 0.065 1.4E-06 45.0 7.1 57 58-117 194-252 (284)
298 COG0686 Ald Alanine dehydrogen 95.3 0.25 5.4E-06 41.7 10.1 102 71-186 168-273 (371)
299 KOG2793 Putative N2,N2-dimethy 95.2 0.12 2.6E-06 42.3 7.9 102 70-181 86-199 (248)
300 TIGR03451 mycoS_dep_FDH mycoth 95.2 0.23 5E-06 42.8 10.2 104 67-182 173-277 (358)
301 cd08237 ribitol-5-phosphate_DH 95.2 0.19 4.1E-06 43.1 9.5 94 69-181 162-256 (341)
302 KOG1331 Predicted methyltransf 95.1 0.024 5.2E-07 46.9 3.4 103 55-179 33-141 (293)
303 PLN03154 putative allyl alcoho 95.1 0.39 8.4E-06 41.4 11.2 103 66-182 154-259 (348)
304 PTZ00357 methyltransferase; Pr 95.0 0.13 2.8E-06 47.8 8.3 104 73-176 703-830 (1072)
305 PF01555 N6_N4_Mtase: DNA meth 95.0 0.078 1.7E-06 42.3 6.4 53 58-113 177-231 (231)
306 PRK13699 putative methylase; P 94.9 0.041 8.9E-07 44.6 4.4 51 124-179 2-70 (227)
307 cd08281 liver_ADH_like1 Zinc-d 94.8 0.27 6E-06 42.6 9.6 103 67-182 188-291 (371)
308 PRK13699 putative methylase; P 94.8 0.14 3E-06 41.5 7.2 57 59-118 150-208 (227)
309 KOG2798 Putative trehalase [Ca 94.7 0.079 1.7E-06 44.6 5.6 118 58-183 131-298 (369)
310 PRK11524 putative methyltransf 94.7 0.071 1.5E-06 44.7 5.4 53 123-180 8-79 (284)
311 KOG2360 Proliferation-associat 94.4 0.06 1.3E-06 46.4 4.4 97 53-155 196-292 (413)
312 cd05188 MDR Medium chain reduc 94.4 0.54 1.2E-05 38.1 10.0 99 69-181 133-232 (271)
313 PRK10309 galactitol-1-phosphat 94.4 0.56 1.2E-05 40.2 10.5 105 67-183 157-262 (347)
314 COG1062 AdhC Zn-dependent alco 94.4 0.46 1E-05 40.6 9.4 104 66-182 181-286 (366)
315 cd08239 THR_DH_like L-threonin 94.3 0.74 1.6E-05 39.2 10.9 101 67-181 160-262 (339)
316 cd00315 Cyt_C5_DNA_methylase C 94.2 0.09 1.9E-06 43.9 4.9 95 73-183 2-113 (275)
317 PF02636 Methyltransf_28: Puta 94.2 0.072 1.6E-06 43.8 4.3 47 71-117 19-72 (252)
318 KOG1099 SAM-dependent methyltr 94.0 0.15 3.3E-06 41.0 5.6 98 70-180 41-162 (294)
319 PF05050 Methyltransf_21: Meth 94.0 0.16 3.5E-06 38.3 5.7 43 76-118 1-48 (167)
320 TIGR00561 pntA NAD(P) transhyd 93.9 0.47 1E-05 43.1 9.3 100 70-179 163-282 (511)
321 TIGR00518 alaDH alanine dehydr 93.9 0.71 1.5E-05 40.3 10.3 104 70-187 166-273 (370)
322 cd08293 PTGR2 Prostaglandin re 93.9 0.9 1.9E-05 38.7 10.8 94 72-179 156-252 (345)
323 COG0604 Qor NADPH:quinone redu 93.9 0.73 1.6E-05 39.5 10.1 103 66-182 138-242 (326)
324 cd08285 NADP_ADH NADP(H)-depen 93.7 1 2.2E-05 38.5 10.8 106 66-183 162-268 (351)
325 PLN02740 Alcohol dehydrogenase 93.7 0.96 2.1E-05 39.4 10.7 104 66-182 194-301 (381)
326 PF01210 NAD_Gly3P_dh_N: NAD-d 93.5 0.35 7.6E-06 36.7 6.8 95 73-179 1-101 (157)
327 TIGR03201 dearomat_had 6-hydro 93.5 0.8 1.7E-05 39.3 9.8 107 67-183 163-274 (349)
328 cd08295 double_bond_reductase_ 93.5 1.5 3.2E-05 37.4 11.4 101 66-180 147-250 (338)
329 PLN02827 Alcohol dehydrogenase 93.4 0.82 1.8E-05 39.9 9.8 104 66-182 189-296 (378)
330 TIGR02825 B4_12hDH leukotriene 93.4 1.7 3.6E-05 36.8 11.5 102 65-181 133-237 (325)
331 PRK05708 2-dehydropantoate 2-r 93.3 0.28 6.1E-06 41.5 6.6 101 72-183 3-107 (305)
332 cd05278 FDH_like Formaldehyde 93.3 0.83 1.8E-05 38.8 9.6 103 66-180 163-266 (347)
333 cd08294 leukotriene_B4_DH_like 93.2 1.6 3.4E-05 36.8 11.2 101 65-180 138-240 (329)
334 COG3129 Predicted SAM-dependen 93.2 0.26 5.6E-06 39.8 5.6 83 72-159 80-165 (292)
335 TIGR03366 HpnZ_proposed putati 93.0 2.2 4.9E-05 35.3 11.5 101 69-183 119-220 (280)
336 PF03686 UPF0146: Uncharacteri 92.9 0.9 2E-05 33.1 7.6 95 63-180 6-101 (127)
337 PF03721 UDPG_MGDP_dh_N: UDP-g 92.8 2.6 5.6E-05 33.0 10.9 101 73-186 2-125 (185)
338 COG3315 O-Methyltransferase in 92.7 1.8 4E-05 36.6 10.5 119 59-181 82-209 (297)
339 KOG2078 tRNA modification enzy 92.6 0.097 2.1E-06 45.8 2.7 65 69-136 248-313 (495)
340 KOG0022 Alcohol dehydrogenase, 92.5 1.9 4E-05 36.7 9.9 106 64-182 186-295 (375)
341 TIGR02818 adh_III_F_hyde S-(hy 92.4 2.2 4.7E-05 37.0 11.0 104 66-182 181-288 (368)
342 COG1568 Predicted methyltransf 92.4 0.84 1.8E-05 38.0 7.7 96 70-174 152-250 (354)
343 PRK07502 cyclohexadienyl dehyd 92.4 0.85 1.8E-05 38.6 8.3 88 72-178 7-97 (307)
344 COG1748 LYS9 Saccharopine dehy 92.4 0.86 1.9E-05 39.9 8.3 84 72-168 2-89 (389)
345 cd08230 glucose_DH Glucose deh 92.3 0.93 2E-05 39.0 8.6 97 69-183 171-271 (355)
346 PF03807 F420_oxidored: NADP o 92.2 0.61 1.3E-05 31.8 6.0 85 74-178 2-91 (96)
347 PF04378 RsmJ: Ribosomal RNA s 92.2 0.86 1.9E-05 37.3 7.6 114 56-179 44-162 (245)
348 TIGR02356 adenyl_thiF thiazole 92.2 1.9 4.2E-05 34.2 9.6 80 70-156 20-120 (202)
349 COG1565 Uncharacterized conser 92.1 0.64 1.4E-05 40.1 7.0 49 71-119 78-133 (370)
350 cd08238 sorbose_phosphate_red 92.1 1 2.2E-05 39.7 8.7 103 68-179 173-286 (410)
351 TIGR01202 bchC 2-desacetyl-2-h 92.1 0.76 1.7E-05 38.8 7.6 88 70-182 144-232 (308)
352 TIGR02822 adh_fam_2 zinc-bindi 91.9 2.5 5.3E-05 36.1 10.6 94 66-182 161-255 (329)
353 PRK12475 thiamine/molybdopteri 91.9 2.1 4.5E-05 36.9 10.0 79 70-156 23-125 (338)
354 cd08261 Zn_ADH7 Alcohol dehydr 91.9 2.2 4.7E-05 36.2 10.2 102 65-179 154-256 (337)
355 cd08300 alcohol_DH_class_III c 91.7 2.9 6.3E-05 36.1 11.0 104 66-182 182-289 (368)
356 cd08233 butanediol_DH_like (2R 91.7 2.7 5.9E-05 35.9 10.7 104 66-182 168-273 (351)
357 PF10354 DUF2431: Domain of un 91.6 1.2 2.7E-05 34.2 7.5 100 77-180 3-124 (166)
358 KOG0821 Predicted ribosomal RN 91.4 0.59 1.3E-05 37.6 5.6 64 66-133 46-109 (326)
359 PF02558 ApbA: Ketopantoate re 91.4 0.57 1.2E-05 34.9 5.5 95 74-182 1-103 (151)
360 cd08278 benzyl_alcohol_DH Benz 91.2 2.5 5.4E-05 36.5 10.1 102 66-180 182-284 (365)
361 PRK09422 ethanol-active dehydr 91.2 4.5 9.8E-05 34.2 11.6 102 65-180 157-260 (338)
362 COG0677 WecC UDP-N-acetyl-D-ma 91.2 1.1 2.3E-05 39.3 7.4 106 72-187 10-134 (436)
363 TIGR02819 fdhA_non_GSH formald 91.1 3.1 6.7E-05 36.5 10.6 107 66-182 181-300 (393)
364 PRK05786 fabG 3-ketoacyl-(acyl 91.1 4.9 0.00011 32.0 11.1 82 70-155 4-89 (238)
365 cd05285 sorbitol_DH Sorbitol d 91.1 3.8 8.2E-05 34.9 11.0 103 65-180 157-264 (343)
366 PF01053 Cys_Met_Meta_PP: Cys/ 91.1 6.2 0.00013 34.7 12.3 126 54-186 53-183 (386)
367 cd08286 FDH_like_ADH2 formalde 91.0 4 8.7E-05 34.7 11.1 102 67-180 163-265 (345)
368 cd08301 alcohol_DH_plants Plan 90.8 3.7 8.1E-05 35.4 10.8 104 66-182 183-290 (369)
369 PRK15001 SAM-dependent 23S rib 90.7 2.4 5.1E-05 37.2 9.3 107 59-181 33-142 (378)
370 PLN02586 probable cinnamyl alc 90.6 4.8 0.0001 34.8 11.3 96 69-181 182-278 (360)
371 KOG3924 Putative protein methy 90.5 3.9 8.6E-05 35.7 10.2 111 67-184 189-311 (419)
372 PF02153 PDH: Prephenate dehyd 90.5 0.98 2.1E-05 37.3 6.5 74 85-177 2-75 (258)
373 PRK12921 2-dehydropantoate 2-r 90.3 1.6 3.5E-05 36.6 7.8 94 73-181 2-103 (305)
374 PF06859 Bin3: Bicoid-interact 90.3 0.2 4.4E-06 35.5 1.9 40 147-186 1-49 (110)
375 COG0270 Dcm Site-specific DNA 90.2 1.9 4.2E-05 36.9 8.3 98 71-183 3-118 (328)
376 KOG2352 Predicted spermine/spe 90.1 1.9 4.2E-05 38.5 8.3 96 73-179 51-159 (482)
377 PRK11064 wecC UDP-N-acetyl-D-m 90.1 3.2 6.9E-05 36.8 9.8 105 72-186 4-124 (415)
378 PF05206 TRM13: Methyltransfer 90.1 1.6 3.4E-05 36.1 7.3 65 69-134 17-85 (259)
379 cd08277 liver_alcohol_DH_like 90.1 5 0.00011 34.6 10.9 104 66-182 180-287 (365)
380 cd05213 NAD_bind_Glutamyl_tRNA 90.0 8.3 0.00018 32.7 11.9 97 69-183 176-274 (311)
381 KOG0780 Signal recognition par 90.0 5.3 0.00011 35.0 10.4 110 73-183 103-224 (483)
382 cd08263 Zn_ADH10 Alcohol dehyd 89.9 3.6 7.9E-05 35.4 9.9 100 68-179 185-285 (367)
383 cd00757 ThiF_MoeB_HesA_family 89.9 3.9 8.5E-05 33.0 9.5 80 70-156 20-120 (228)
384 PF07757 AdoMet_MTase: Predict 89.9 0.31 6.7E-06 34.5 2.6 32 70-104 58-89 (112)
385 COG2961 ComJ Protein involved 89.9 6.7 0.00015 32.2 10.5 116 54-179 73-193 (279)
386 PF00145 DNA_methylase: C-5 cy 89.9 1.1 2.4E-05 37.8 6.6 94 73-183 2-112 (335)
387 COG0287 TyrA Prephenate dehydr 89.9 1.7 3.8E-05 36.3 7.5 87 72-176 4-93 (279)
388 cd01488 Uba3_RUB Ubiquitin act 89.8 3.2 6.8E-05 35.0 9.0 77 73-156 1-97 (291)
389 PF12242 Eno-Rase_NADH_b: NAD( 89.7 1 2.2E-05 29.7 4.7 37 69-105 37-74 (78)
390 PRK09496 trkA potassium transp 89.7 3.8 8.3E-05 36.5 10.2 73 71-156 231-306 (453)
391 PLN02662 cinnamyl-alcohol dehy 89.4 2.5 5.3E-05 35.6 8.4 79 70-155 3-84 (322)
392 cd00401 AdoHcyase S-adenosyl-L 89.3 4.7 0.0001 35.8 10.1 88 69-181 200-289 (413)
393 TIGR00692 tdh L-threonine 3-de 89.3 8.3 0.00018 32.7 11.6 100 68-180 159-260 (340)
394 cd08236 sugar_DH NAD(P)-depend 89.2 6.4 0.00014 33.4 10.8 102 65-180 154-257 (343)
395 COG1893 ApbA Ketopantoate redu 89.1 1.8 3.9E-05 36.8 7.2 38 145-182 65-103 (307)
396 cd05281 TDH Threonine dehydrog 89.1 8.7 0.00019 32.6 11.6 99 69-180 162-261 (341)
397 PRK09496 trkA potassium transp 89.1 4.3 9.3E-05 36.1 10.0 94 73-178 2-97 (453)
398 PRK08324 short chain dehydroge 89.0 4.6 9.9E-05 38.3 10.5 80 70-156 421-507 (681)
399 PRK07417 arogenate dehydrogena 88.9 2.5 5.4E-05 35.3 7.9 85 73-177 2-87 (279)
400 PRK05703 flhF flagellar biosyn 88.9 17 0.00036 32.5 14.6 79 71-156 221-308 (424)
401 PF13460 NAD_binding_10: NADH( 88.8 8.7 0.00019 29.2 11.3 133 74-224 1-141 (183)
402 cd08255 2-desacetyl-2-hydroxye 88.8 5.3 0.00012 32.7 9.8 94 66-179 93-188 (277)
403 PRK06522 2-dehydropantoate 2-r 88.8 4.5 9.7E-05 33.8 9.5 92 73-178 2-97 (304)
404 COG1004 Ugd Predicted UDP-gluc 88.8 13 0.00028 32.7 12.1 101 73-186 2-125 (414)
405 cd01484 E1-2_like Ubiquitin ac 88.7 4.8 0.0001 32.8 9.1 76 73-156 1-100 (234)
406 COG1255 Uncharacterized protei 88.7 6 0.00013 28.4 8.3 86 63-169 6-92 (129)
407 cd08232 idonate-5-DH L-idonate 88.7 2.8 6.1E-05 35.5 8.2 95 70-179 165-260 (339)
408 PLN02256 arogenate dehydrogena 88.6 6.2 0.00013 33.5 10.1 89 66-175 31-121 (304)
409 PRK15182 Vi polysaccharide bio 88.6 4.4 9.6E-05 36.1 9.6 103 70-186 5-125 (425)
410 cd08265 Zn_ADH3 Alcohol dehydr 88.5 5.3 0.00011 34.8 10.0 103 67-180 200-306 (384)
411 PF00899 ThiF: ThiF family; I 88.5 4 8.7E-05 29.8 8.0 79 71-157 2-102 (135)
412 PRK15057 UDP-glucose 6-dehydro 88.4 2.4 5.1E-05 37.3 7.7 100 74-186 3-122 (388)
413 PLN02353 probable UDP-glucose 88.3 17 0.00037 32.9 13.1 101 73-186 3-132 (473)
414 PRK06940 short chain dehydroge 88.2 7.1 0.00015 32.2 10.2 81 72-156 3-85 (275)
415 PRK12439 NAD(P)H-dependent gly 88.1 1.8 3.9E-05 37.3 6.6 101 70-183 6-114 (341)
416 cd08291 ETR_like_1 2-enoyl thi 88.0 7.5 0.00016 32.8 10.4 98 70-181 142-242 (324)
417 PRK07688 thiamine/molybdopteri 87.9 7.2 0.00016 33.6 10.2 79 70-156 23-125 (339)
418 TIGR00675 dcm DNA-methyltransf 87.9 1.6 3.4E-05 37.2 6.1 93 74-183 1-110 (315)
419 PRK08293 3-hydroxybutyryl-CoA 87.8 5.1 0.00011 33.5 9.1 96 72-179 4-118 (287)
420 cd05279 Zn_ADH1 Liver alcohol 87.8 8.1 0.00018 33.3 10.6 103 66-181 179-285 (365)
421 cd08296 CAD_like Cinnamyl alco 87.7 5.5 0.00012 33.8 9.5 98 67-180 160-258 (333)
422 PRK08655 prephenate dehydrogen 87.7 2.7 5.7E-05 37.6 7.7 85 73-176 2-87 (437)
423 PRK06130 3-hydroxybutyryl-CoA 87.7 6.5 0.00014 33.2 9.8 95 71-178 4-112 (311)
424 PRK08594 enoyl-(acyl carrier p 87.6 13 0.00029 30.2 11.4 82 70-155 6-95 (257)
425 KOG2015 NEDD8-activating compl 87.6 7.4 0.00016 33.2 9.6 89 72-168 41-150 (422)
426 cd08266 Zn_ADH_like1 Alcohol d 87.6 6.8 0.00015 32.8 9.9 101 66-180 162-264 (342)
427 KOG2782 Putative SAM dependent 87.6 0.47 1E-05 38.0 2.5 101 56-159 30-130 (303)
428 PF01262 AlaDh_PNT_C: Alanine 87.6 1.3 2.8E-05 34.0 5.0 45 67-113 16-61 (168)
429 cd08279 Zn_ADH_class_III Class 87.5 5.4 0.00012 34.3 9.4 103 66-180 178-281 (363)
430 KOG1201 Hydroxysteroid 17-beta 87.4 5.5 0.00012 33.5 8.8 80 70-155 37-122 (300)
431 PRK08507 prephenate dehydrogen 87.4 2.8 6.2E-05 34.8 7.3 84 73-178 2-88 (275)
432 PRK10669 putative cation:proto 87.3 2.6 5.6E-05 38.9 7.6 93 72-179 418-513 (558)
433 PRK05600 thiamine biosynthesis 87.2 9.9 0.00021 33.2 10.8 79 70-156 40-140 (370)
434 PRK07109 short chain dehydroge 87.1 13 0.00028 31.8 11.4 81 70-156 7-94 (334)
435 PRK07063 short chain dehydroge 87.1 6.9 0.00015 31.7 9.4 83 70-156 6-95 (260)
436 cd05286 QOR2 Quinone oxidoredu 87.1 8.7 0.00019 31.6 10.2 98 65-179 131-233 (320)
437 PLN02989 cinnamyl-alcohol dehy 87.1 4.4 9.5E-05 34.2 8.5 79 70-155 4-85 (325)
438 PRK05854 short chain dehydroge 87.1 7.3 0.00016 32.9 9.8 82 70-155 13-101 (313)
439 PRK06949 short chain dehydroge 87.1 8.5 0.00018 31.0 9.9 81 70-156 8-95 (258)
440 KOG0023 Alcohol dehydrogenase, 86.7 2.6 5.6E-05 35.9 6.5 101 68-182 179-280 (360)
441 PRK00066 ldh L-lactate dehydro 86.7 18 0.00039 30.8 11.9 77 69-156 4-82 (315)
442 cd08231 MDR_TM0436_like Hypoth 86.7 9.7 0.00021 32.6 10.5 98 70-180 177-279 (361)
443 PRK07523 gluconate 5-dehydroge 86.6 7.2 0.00016 31.5 9.2 84 70-156 9-96 (255)
444 PRK08213 gluconate 5-dehydroge 86.4 7.1 0.00015 31.6 9.1 80 70-155 11-97 (259)
445 cd01483 E1_enzyme_family Super 86.4 11 0.00024 27.7 9.5 77 73-157 1-99 (143)
446 PF11312 DUF3115: Protein of u 86.3 1.9 4.2E-05 36.4 5.6 109 72-181 88-242 (315)
447 PRK08762 molybdopterin biosynt 86.3 7 0.00015 34.2 9.4 80 70-156 134-234 (376)
448 PRK07680 late competence prote 86.3 3.8 8.2E-05 34.0 7.4 87 73-178 2-93 (273)
449 PRK07326 short chain dehydroge 86.3 6.4 0.00014 31.3 8.7 78 71-155 6-90 (237)
450 PRK06914 short chain dehydroge 86.2 7.7 0.00017 31.8 9.3 81 71-155 3-89 (280)
451 PRK05599 hypothetical protein; 86.1 8.1 0.00018 31.2 9.2 79 73-156 2-86 (246)
452 PLN02514 cinnamyl-alcohol dehy 86.0 14 0.00031 31.7 11.1 97 69-182 179-276 (357)
453 PRK10083 putative oxidoreducta 86.0 8.9 0.00019 32.4 9.8 101 66-180 156-258 (339)
454 PRK03659 glutathione-regulated 86.0 3.6 7.8E-05 38.4 7.8 92 72-179 401-496 (601)
455 PRK05867 short chain dehydroge 86.0 6.9 0.00015 31.6 8.8 80 70-155 8-94 (253)
456 COG4017 Uncharacterized protei 85.8 4 8.6E-05 32.2 6.6 95 62-183 36-131 (254)
457 COG0569 TrkA K+ transport syst 85.8 8.3 0.00018 31.1 9.0 81 73-167 2-86 (225)
458 PF10237 N6-adenineMlase: Prob 85.7 12 0.00026 28.7 9.2 108 56-180 9-122 (162)
459 PRK05690 molybdopterin biosynt 85.6 12 0.00026 30.6 10.0 80 70-156 31-131 (245)
460 KOG1371 UDP-glucose 4-epimeras 85.5 4.6 9.9E-05 34.5 7.4 79 71-154 2-84 (343)
461 PF08351 DUF1726: Domain of un 85.3 4 8.6E-05 28.1 5.9 76 145-220 9-89 (92)
462 PRK05396 tdh L-threonine 3-deh 85.3 9.1 0.0002 32.5 9.5 100 70-181 163-263 (341)
463 PF07015 VirC1: VirC1 protein; 85.3 2.8 6.1E-05 34.0 5.9 75 80-155 12-91 (231)
464 PRK12384 sorbitol-6-phosphate 85.3 9.3 0.0002 30.9 9.2 81 71-155 2-89 (259)
465 PRK05597 molybdopterin biosynt 85.2 9.9 0.00021 33.0 9.7 79 70-156 27-127 (355)
466 cd05288 PGDH Prostaglandin deh 85.2 10 0.00022 31.8 9.8 99 67-179 142-242 (329)
467 PRK07666 fabG 3-ketoacyl-(acyl 85.1 13 0.00028 29.6 9.9 80 70-155 6-92 (239)
468 PRK03562 glutathione-regulated 85.1 3.4 7.3E-05 38.7 7.2 93 71-179 400-496 (621)
469 PRK05967 cystathionine beta-ly 85.0 27 0.00058 30.9 12.5 122 55-183 63-188 (395)
470 cd08241 QOR1 Quinone oxidoredu 85.0 14 0.0003 30.5 10.4 101 66-180 135-237 (323)
471 PRK11199 tyrA bifunctional cho 84.9 15 0.00033 32.1 10.8 33 72-105 99-132 (374)
472 PRK08114 cystathionine beta-ly 84.9 27 0.00059 30.8 14.9 128 54-188 60-193 (395)
473 KOG2912 Predicted DNA methylas 84.8 1.9 4E-05 36.7 4.7 93 58-154 85-185 (419)
474 PRK07774 short chain dehydroge 84.8 9.8 0.00021 30.5 9.1 81 70-156 5-92 (250)
475 PRK08415 enoyl-(acyl carrier p 84.7 21 0.00045 29.5 11.2 81 70-156 4-92 (274)
476 PF03269 DUF268: Caenorhabditi 84.7 2.9 6.2E-05 32.0 5.3 97 71-183 2-113 (177)
477 PRK06172 short chain dehydroge 84.7 12 0.00026 30.2 9.6 80 70-155 6-92 (253)
478 PRK07062 short chain dehydroge 84.6 11 0.00023 30.7 9.4 83 70-156 7-96 (265)
479 PRK05808 3-hydroxybutyryl-CoA 84.6 14 0.00031 30.7 10.2 93 72-178 4-115 (282)
480 PRK06223 malate dehydrogenase; 84.5 13 0.00029 31.3 10.0 37 72-109 3-40 (307)
481 PTZ00354 alcohol dehydrogenase 84.4 15 0.00032 30.8 10.4 100 67-180 137-239 (334)
482 PRK12491 pyrroline-5-carboxyla 84.2 6.1 0.00013 32.9 7.7 87 73-180 4-95 (272)
483 PRK09242 tropinone reductase; 84.1 12 0.00025 30.3 9.3 83 70-156 8-97 (257)
484 TIGR02355 moeB molybdopterin s 84.1 15 0.00032 30.0 9.8 81 70-157 23-124 (240)
485 PRK08328 hypothetical protein; 84.0 14 0.00031 29.9 9.6 80 70-156 26-127 (231)
486 PRK05939 hypothetical protein; 84.0 29 0.00064 30.5 12.3 121 55-183 46-170 (397)
487 PRK12429 3-hydroxybutyrate deh 83.9 11 0.00025 30.2 9.2 80 70-155 3-89 (258)
488 cd08243 quinone_oxidoreductase 83.8 18 0.0004 29.9 10.7 97 67-180 139-237 (320)
489 cd08240 6_hydroxyhexanoate_dh_ 83.7 16 0.00035 31.1 10.4 95 70-180 175-273 (350)
490 PLN02650 dihydroflavonol-4-red 83.7 5.8 0.00013 33.9 7.7 79 70-155 4-85 (351)
491 cd08297 CAD3 Cinnamyl alcohol 83.7 20 0.00043 30.3 11.0 101 67-180 162-264 (341)
492 cd01492 Aos1_SUMO Ubiquitin ac 83.7 12 0.00027 29.5 8.9 79 70-156 20-119 (197)
493 cd08234 threonine_DH_like L-th 83.6 11 0.00023 31.8 9.2 99 65-179 154-255 (334)
494 cd00755 YgdL_like Family of ac 83.6 18 0.00039 29.4 10.0 80 70-155 10-110 (231)
495 cd01487 E1_ThiF_like E1_ThiF_l 83.6 18 0.00039 27.8 10.7 74 73-154 1-95 (174)
496 PRK06079 enoyl-(acyl carrier p 83.6 22 0.00048 28.8 11.0 78 70-155 6-91 (252)
497 cd05292 LDH_2 A subgroup of L- 83.5 24 0.00052 29.9 11.2 73 73-156 2-76 (308)
498 PRK15116 sulfur acceptor prote 83.4 21 0.00045 29.8 10.4 81 70-156 29-130 (268)
499 PRK07478 short chain dehydroge 83.4 13 0.00027 30.0 9.3 81 70-156 5-92 (254)
500 KOG1098 Putative SAM-dependent 83.4 1.8 3.8E-05 40.0 4.3 38 68-105 42-79 (780)
No 1
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=1.1e-40 Score=270.84 Aligned_cols=223 Identities=61% Similarity=1.038 Sum_probs=198.3
Q ss_pred CCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC
Q 026547 14 LLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIP 93 (237)
Q Consensus 14 ~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~ 93 (237)
....+.+++|+..++..+..++.+.++++.+..++++.|.+++.++++|..+++..++++|||||+++|++++++|.+++
T Consensus 23 ~~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~ 102 (247)
T PLN02589 23 LLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALP 102 (247)
T ss_pred ccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCC
Confidence 35568999999887767788899999999999998888889999999999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCC
Q 026547 94 EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKV 173 (237)
Q Consensus 94 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~ 173 (237)
++++|+++|.+++..+.|+++++++|+.++|+++.|++.+.++.+.+.....++||+||+|+++.+|..+|+.+.++|++
T Consensus 103 ~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~ 182 (247)
T PLN02589 103 EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKV 182 (247)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999998754311126899999999999999999999999999
Q ss_pred CeEEEEeCcCCCCcccCCCCCCCcc-ccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547 174 GGIAVYDNTLWGGTVAMSEEQVPDH-LRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236 (237)
Q Consensus 174 gG~lv~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~ 236 (237)
||+|++||++|+|.+.++....++. .......+++|++.+..+|+++++++|+|+|+.+++|+
T Consensus 183 GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 183 GGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred CeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 9999999999999998875432221 12223468899999999999999999999999999986
No 2
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=7.8e-41 Score=265.14 Aligned_cols=199 Identities=43% Similarity=0.776 Sum_probs=179.4
Q ss_pred CCcHHHHHHHHHHhhCC-CCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHH
Q 026547 32 REPEHLKEIRDVTADHP-RAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEI 110 (237)
Q Consensus 32 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~ 110 (237)
.+++.++++++.+.... ++.|.+++.++++|..+++..++++||||||++|++++++|+++|++++|+++|++++..+.
T Consensus 6 ~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~ 85 (205)
T PF01596_consen 6 REPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEI 85 (205)
T ss_dssp CSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHH
Confidence 47899999999988765 77889999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcCCCCcccC
Q 026547 111 GLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAM 190 (237)
Q Consensus 111 a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~ 190 (237)
|+++++.+|+.++|+++.+|+.+.++.+..+. ..++||+||+|+.+.+|..+|+.+.++|++||+|++||++|+|.+..
T Consensus 86 A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~ 164 (205)
T PF01596_consen 86 ARENFRKAGLDDRIEVIEGDALEVLPELANDG-EEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVAD 164 (205)
T ss_dssp HHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-TTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGS
T ss_pred HHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-CCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecC
Confidence 99999999999999999999999999886541 13589999999999999999999999999999999999999999998
Q ss_pred CCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236 (237)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~ 236 (237)
+... ...+..+++|++++.++|+|+++++|+++|+.+++||
T Consensus 165 ~~~~-----~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 165 PDDE-----DPKTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp TTGG-----SHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred ccch-----hhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 8444 2345669999999999999999999999999999996
No 3
>PLN02476 O-methyltransferase
Probab=100.00 E-value=2.7e-39 Score=265.47 Aligned_cols=216 Identities=38% Similarity=0.679 Sum_probs=194.8
Q ss_pred CCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh
Q 026547 12 KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALT 91 (237)
Q Consensus 12 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~ 91 (237)
+.....+.+++|+.++ . .+++.+.++++.+.++..+.|.+++.++++|..++...++++||||||++|+++++++..
T Consensus 63 ~~~~~~~~i~~Y~~~~--~-~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~a 139 (278)
T PLN02476 63 QVISLTPRLYDYVLSN--V-REPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALV 139 (278)
T ss_pred CcccchHHHHHHHHhc--C-CCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHh
Confidence 3445567999999985 2 578899999999998877788999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccC
Q 026547 92 IPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLL 171 (237)
Q Consensus 92 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L 171 (237)
++++++|+++|.+++.++.|+++++++|+.++|+++.||+.+.++.+.++ ...++||+||+|+++.++..+++.+.++|
T Consensus 140 l~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL 218 (278)
T PLN02476 140 LPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLV 218 (278)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhc
Confidence 98789999999999999999999999999999999999999999876432 11368999999999999999999999999
Q ss_pred CCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547 172 KVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236 (237)
Q Consensus 172 ~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~ 236 (237)
++||+|++||++|+|.+.++... ...+..+++|++++.++|+++++++|+|+|+.+++|+
T Consensus 219 ~~GGvIV~DNvL~~G~V~d~~~~-----d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 219 RVGGVIVMDNVLWHGRVADPLVN-----DAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred CCCcEEEEecCccCCcccCcccC-----CHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 99999999999999999887544 2346789999999999999999999999999999985
No 4
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=3.8e-39 Score=261.82 Aligned_cols=221 Identities=57% Similarity=0.976 Sum_probs=197.3
Q ss_pred CcHHHHHHHhhccCCCCCcHHHHHHHHHHhhC--CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC
Q 026547 16 QSEELYRYILETSVYPREPEHLKEIRDVTADH--PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIP 93 (237)
Q Consensus 16 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~ 93 (237)
..+.+++|+.+++..+++++.+.++++.+.++ ..+.|.+.+..+++|..++...++++|||+|||+|+++++++++++
T Consensus 12 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~ 91 (234)
T PLN02781 12 KSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALP 91 (234)
T ss_pred CcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCC
Confidence 34689999988765667889999999998876 3466788999999999999999999999999999999999999988
Q ss_pred CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCC
Q 026547 94 EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKV 173 (237)
Q Consensus 94 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~ 173 (237)
.+++|+++|+++++++.|+++++.+|+.++++++.+|+.+.++.+.++ ...++||+||+|+.+..+..+++.+.++|+|
T Consensus 92 ~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~ 170 (234)
T PLN02781 92 EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKV 170 (234)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999999999999998876432 1136899999999999999999999999999
Q ss_pred CeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEcC
Q 026547 174 GGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237 (237)
Q Consensus 174 gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~~ 237 (237)
||+|+++|++|+|.+.++....+++....++.+++|++.+.++|+++++++|+|+|+.+++|+.
T Consensus 171 GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~~ 234 (234)
T PLN02781 171 GGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRLV 234 (234)
T ss_pred CeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEeC
Confidence 9999999999999999886655555556678899999999999999999999999999999863
No 5
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=252.16 Aligned_cols=215 Identities=35% Similarity=0.602 Sum_probs=192.0
Q ss_pred CCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh
Q 026547 12 KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALT 91 (237)
Q Consensus 12 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~ 91 (237)
....+.+.+.+|++++.. +..+..++.+++.+.+.+.+.+ .++++++|..++...++++|||||++.|+++++||..
T Consensus 4 ~~~~~~~~l~~y~~~~~~-~~~~~~~~~~~e~a~~~~~pi~--~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~ 80 (219)
T COG4122 4 RMPNMDEDLYDYLEALIP-GEPPALLAELEEFARENGVPII--DPETGALLRLLARLSGPKRILEIGTAIGYSALWMALA 80 (219)
T ss_pred ccccchHHHHHHHHhhcc-cCCchHHHHHHHHhHhcCCCCC--ChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhh
Confidence 456678999999999752 2467888889998888877654 4999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHcc
Q 026547 92 IPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKL 170 (237)
Q Consensus 92 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~ 170 (237)
+|.+++++++|+++++++.|+++++++|+.++|+++. +|+.+.+... ..++||+||+|+++.+++++|+.+.++
T Consensus 81 l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~~fDliFIDadK~~yp~~le~~~~l 155 (219)
T COG4122 81 LPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDGSFDLVFIDADKADYPEYLERALPL 155 (219)
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCCCccEEEEeCChhhCHHHHHHHHHH
Confidence 9988999999999999999999999999999999999 6999988862 158999999999999999999999999
Q ss_pred CCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEcC
Q 026547 171 LKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237 (237)
Q Consensus 171 L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~~ 237 (237)
|+|||+|++||++|+|.+.++.. +..+..++.++.|++++.++|++..+++|+|+|+.+++|+.
T Consensus 156 Lr~GGliv~DNvl~~G~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~~ 219 (219)
T COG4122 156 LRPGGLIVADNVLFGGRVADPSI---RDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKRG 219 (219)
T ss_pred hCCCcEEEEeecccCCccCCccc---hhHHHHHHHHHHHHHHHhhCcCceeEEEecCCceEEEeecC
Confidence 99999999999999999988743 22244566699999999999999999999999999999874
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-36 Score=235.00 Aligned_cols=222 Identities=55% Similarity=0.941 Sum_probs=201.5
Q ss_pred CCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCC--CCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHh
Q 026547 13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHP--RAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTAL 90 (237)
Q Consensus 13 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~ 90 (237)
....++.++.|+..++.++.+.+.+.++++.+..++ ...|.+.+..++++..+++..+++++||||+.+|++++.+|.
T Consensus 14 ~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Al 93 (237)
T KOG1663|consen 14 LILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVAL 93 (237)
T ss_pred cccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHH
Confidence 778889999999999889999999999999998874 667999999999999999999999999999999999999999
Q ss_pred hCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHcc
Q 026547 91 TIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKL 170 (237)
Q Consensus 91 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~ 170 (237)
++|++++|+++|++++..+.+.+..+.+|...+|+++++.+.+.+.++.+.. ..++||++|+|+++.++..+++++.++
T Consensus 94 alp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~-~~~tfDfaFvDadK~nY~~y~e~~l~L 172 (237)
T KOG1663|consen 94 ALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG-ESGTFDFAFVDADKDNYSNYYERLLRL 172 (237)
T ss_pred hcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC-CCCceeEEEEccchHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999887653 468999999999999999999999999
Q ss_pred CCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547 171 LKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236 (237)
Q Consensus 171 L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~ 236 (237)
+++||+|++||++|.|.+.+|....+.+......+ -++++++..+|++..+.+|+|+|+.+++|+
T Consensus 173 lr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~-~~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 173 LRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREA-LNLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred cccccEEEEeccccCCcccCcccCCCcchhhhhhh-hhhhhHhccCcceeeEeeeccCceeeeccC
Confidence 99999999999999998888766544332222222 399999999999999999999999999985
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=1.4e-18 Score=125.38 Aligned_cols=104 Identities=22% Similarity=0.362 Sum_probs=87.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
++.+|||+|||+|..+.++++..+ +.+|+++|+++++++.+++++...+..++++++++|+ ...... .++||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence 467999999999999999999655 8899999999999999999998788888999999999 332222 47899
Q ss_pred EEEEeC-CCcC------cHHHHHHHHccCCCCeEEEEeC
Q 026547 150 YAFVDA-DKVN------YWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 150 ~i~id~-~~~~------~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
+|++.. .... ...+++.+.+.|+|||+++++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999988 3222 2456999999999999999874
No 8
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.75 E-value=1.5e-16 Score=122.12 Aligned_cols=118 Identities=25% Similarity=0.272 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
++.-.+........++.+++|||||+|..++.++...| .++|+++|.++++++..++|.++.|. ++++++.+++.+.+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L 97 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhh
Confidence 34443444445667888999999999999999996655 89999999999999999999999995 57999999999998
Q ss_pred HHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+.+ .+||.||+.+. .+....++.++..|+|||.||++-+.
T Consensus 98 ~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 98 PDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred cCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 754 48999999998 78899999999999999999998765
No 9
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.75 E-value=3.9e-17 Score=130.48 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
+.....+...+...++.+|||+|||+|+.+..+++.++..++|+++|+++++++.|+++++..+..++++++.+|+.+.+
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence 44444444555556678999999999999999998876568999999999999999999999888778999999987654
Q ss_pred HHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
+. ..+||+|+++......+ +.+.+.|+|||.+++..
T Consensus 138 ~~-------~~~fD~Ii~~~~~~~~~---~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 EK-------HAPFDAIIVTAAASTIP---SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cc-------CCCccEEEEccCcchhh---HHHHHhcCcCcEEEEEE
Confidence 32 37899999987655443 56778999999998853
No 10
>PRK04457 spermidine synthase; Provisional
Probab=99.72 E-value=6.5e-16 Score=127.66 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
++...++..+....++++|||||||.|.++.++++..| +.+|+++|+++++++.|++++...+..++++++.+|+.+++
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI 130 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence 44444555555556788999999999999999999887 78999999999999999999876555578999999999988
Q ss_pred HHHhhcCCCCCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEe
Q 026547 136 DQLLKDSENEGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~ 180 (237)
... .++||+|++|..... ..++++.+.+.|+|||+++++
T Consensus 131 ~~~------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 131 AVH------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HhC------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 754 468999999964322 368999999999999999996
No 11
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.1e-16 Score=125.49 Aligned_cols=119 Identities=22% Similarity=0.267 Sum_probs=101.1
Q ss_pred CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547 48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI 127 (237)
Q Consensus 48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 127 (237)
+.+...+.+.....|..++...++.+|||||||+||.+.-|++... +|+++|..++..+.|+++++..|+.+ |.++
T Consensus 50 ~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~ 125 (209)
T COG2518 50 GCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYEN-VTVR 125 (209)
T ss_pred CCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEE
Confidence 3444556777777888888899999999999999999999998754 99999999999999999999999976 9999
Q ss_pred eccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 128 ESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
++|...-++. ..+||.|++.+.....++ .+.+.|++||.+++-
T Consensus 126 ~gDG~~G~~~-------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P 168 (209)
T COG2518 126 HGDGSKGWPE-------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP 168 (209)
T ss_pred ECCcccCCCC-------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence 9999887664 389999999987766553 366788999999873
No 12
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.71 E-value=3.1e-16 Score=114.84 Aligned_cols=112 Identities=22% Similarity=0.277 Sum_probs=92.9
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547 62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 141 (237)
+.......++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++..+.. +++++.+|+.+.++..
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 85 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS--- 85 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh---
Confidence 33334455667999999999999999999877 589999999999999999999888764 5899999876544332
Q ss_pred CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.++||.|+++.......++++.+.+.|+|||.+++.-
T Consensus 86 ---~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 86 ---LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ---cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 3689999998766667889999999999999999863
No 13
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.71 E-value=7.6e-16 Score=121.32 Aligned_cols=117 Identities=26% Similarity=0.271 Sum_probs=95.8
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (237)
.......+...+...++.+|||+|||+|..++.+++..+ +.+|+++|+++.+++.++++++..++. +++++.+|+...
T Consensus 16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~ 93 (187)
T PRK08287 16 KEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE 93 (187)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh
Confidence 344444444455566788999999999999999998876 789999999999999999999888874 599999987432
Q ss_pred HHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 135 LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+ .++||+|+++.....+..+++.+.+.|+|||.++++.+
T Consensus 94 ~---------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 94 L---------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred c---------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 1 36899999987666778899999999999999999754
No 14
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.70 E-value=3.7e-16 Score=125.77 Aligned_cols=154 Identities=25% Similarity=0.353 Sum_probs=109.8
Q ss_pred CCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhh-CC----CCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHH
Q 026547 13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTAD-HP----RAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLL 87 (237)
Q Consensus 13 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~-~~----~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~ 87 (237)
....+.++.+.+.. +|++.-.-......+.. .. .+.....+.....+..++...++.+|||||||+|+.+..
T Consensus 18 ~~v~~~~v~~a~~~---v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~ 94 (215)
T TIGR00080 18 GYIKSKRVIDALLS---VPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAV 94 (215)
T ss_pred CCcCCHHHHHHHHh---CChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHH
Confidence 34466777777665 44443222222222221 11 122223455555666666777889999999999999999
Q ss_pred HHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHH
Q 026547 88 TALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERL 167 (237)
Q Consensus 88 la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~ 167 (237)
+++..+.+++|+++|+++++++.|+++++..++ ++++++++|+.+.++. ..+||+|+++...... .+.+
T Consensus 95 la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~---~~~~ 163 (215)
T TIGR00080 95 LAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LAPYDRIYVTAAGPKI---PEAL 163 (215)
T ss_pred HHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cCCCCEEEEcCCcccc---cHHH
Confidence 999876567899999999999999999999987 4699999998765432 3689999998765544 3557
Q ss_pred HccCCCCeEEEEe
Q 026547 168 MKLLKVGGIAVYD 180 (237)
Q Consensus 168 ~~~L~~gG~lv~~ 180 (237)
.+.|+|||.+++.
T Consensus 164 ~~~L~~gG~lv~~ 176 (215)
T TIGR00080 164 IDQLKEGGILVMP 176 (215)
T ss_pred HHhcCcCcEEEEE
Confidence 7889999999884
No 15
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.70 E-value=5.4e-16 Score=123.25 Aligned_cols=112 Identities=25% Similarity=0.359 Sum_probs=96.1
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
....++.+|||+|||+|..++.+++..++.++|+++|+++++++.++++++..++.+++.++.+|+.+.++.. .
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~ 109 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------N 109 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------C
Confidence 3456778999999999999999988765568999999999999999999999886677999999998766543 3
Q ss_pred CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
++||+||+.........+++.+.+.|+|||.++++.+.
T Consensus 110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 68999999876667788999999999999999986543
No 16
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.70 E-value=7.9e-16 Score=120.41 Aligned_cols=102 Identities=23% Similarity=0.307 Sum_probs=87.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
..++.+|||+|||+|..++.++...+ .++|+++|.++.+++.+++++++.++. +++++++|+.+... .++
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~--------~~~ 109 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH--------EEQ 109 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc--------cCC
Confidence 34588999999999999999987665 689999999999999999999988875 59999999977521 379
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
||+|++++ ..++..+++.+.++|+|||.+++.
T Consensus 110 fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 110 FDVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 99999887 556778899999999999999975
No 17
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.70 E-value=4.2e-16 Score=125.10 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=97.3
Q ss_pred ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
..+.+.....+...+...++.+|||||||+|+.+..+++..+.+++|+++|+++++++.++++++..+. ++++++++|+
T Consensus 58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~ 136 (212)
T PRK13942 58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDG 136 (212)
T ss_pred EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCc
Confidence 346677777777777788889999999999999999998876578999999999999999999999887 4699999998
Q ss_pred hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
.+.++. ..+||+|++++.....+ +.+.+.|+|||.+++.
T Consensus 137 ~~~~~~-------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 137 TLGYEE-------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP 175 (212)
T ss_pred ccCCCc-------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence 765431 37899999987655443 4567789999998884
No 18
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=3.7e-16 Score=125.95 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=98.8
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547 59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL 138 (237)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 138 (237)
-+.+-.+....++.+|||+|||+|-.++.+++..+ .++|+++|+|+.|++.+++.....+..+ ++++++|+.+.
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L---- 113 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL---- 113 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC----
Confidence 33333444444789999999999999999999988 8999999999999999999999988877 99999999776
Q ss_pred hhcCCCCCceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 139 LKDSENEGSFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 139 ~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
++++.+||+|.+.- +..+....++++.|.|||||.+++-+...
T Consensus 114 ---Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 114 ---PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred ---CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 24579999998874 34567889999999999999999877653
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.68 E-value=8.7e-16 Score=120.51 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=88.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
++.+|||+|||+|..++.+++..+ +++|+++|+++++++.|+++.+..++.+ ++++++|+.+... .++||
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--------~~~fD 114 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--------EEKFD 114 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--------CCCcc
Confidence 478999999999999999998766 7899999999999999999999999865 9999999877421 36899
Q ss_pred EEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 150 YAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
+|+++. ..++..+++.+.+.|+|||.+++-.
T Consensus 115 lV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 115 VVTSRA-VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 999876 3467889999999999999998763
No 20
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.68 E-value=4.2e-16 Score=126.48 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=83.8
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547 62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 141 (237)
+..+....++.+|||+|||+|..+..+++..++.++|+++|+++.|++.|++.+...+.. +|+++++|+.+..
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp------ 111 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLP------ 111 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--------
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhc------
Confidence 344456677889999999999999999998876889999999999999999999988865 7999999997752
Q ss_pred CCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 142 SENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 142 ~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+.+++||.|++.-. ..+....++++.++|||||.+++-+..
T Consensus 112 -~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 112 -FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence 23689999998753 345678999999999999999886654
No 21
>PLN03075 nicotianamine synthase; Provisional
Probab=99.67 E-value=7e-16 Score=127.93 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh-cCCCCcEEEEeccch
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK-AGVDHKINFIESEAL 132 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G-~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~ 132 (237)
.+...+++..+... ++++|+|||||.| ++++.++..+.++++++++|.++++++.|++.++. .++.++++|+.+|+.
T Consensus 109 ~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~ 187 (296)
T PLN03075 109 SKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM 187 (296)
T ss_pred HHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence 34555566555555 8899999999966 45566665444489999999999999999999965 888889999999998
Q ss_pred HHHHHHhhcCCCCCceeEEEEeC----CCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDA----DKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~----~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+..+. .++||+||+++ .+.....+++.+.+.|+|||++++-..
T Consensus 188 ~~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 188 DVTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred hcccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 75322 37899999985 346778999999999999999999763
No 22
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.67 E-value=3.3e-15 Score=118.56 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=100.7
Q ss_pred CCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec
Q 026547 50 AMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES 129 (237)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (237)
+.+.+.+....++...+...++.+|||+|||+|..+..+++..+ +++|+++|+++++++.++++++..+.. +++++.+
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~ 97 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEG 97 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEEC
Confidence 44456677777666666777788999999999999999987665 689999999999999999999988874 6999999
Q ss_pred cchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 130 EALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
|+.+.+..+ ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus 98 d~~~~~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 98 SAPECLAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred chHHHHhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 987755433 245788888764 3457889999999999999998764
No 23
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.66 E-value=8.5e-16 Score=122.43 Aligned_cols=135 Identities=19% Similarity=0.268 Sum_probs=103.4
Q ss_pred HHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH
Q 026547 36 HLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI 115 (237)
Q Consensus 36 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~ 115 (237)
.+++++..+...+++ .+++....+...+.. ++.+|||+|||+|..+..+++..+ ..+|+++|+++++++.+++++
T Consensus 10 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~ 84 (202)
T PRK00121 10 RLTKGQQRAIEELWP--RLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKI 84 (202)
T ss_pred ccccchhhhhcccch--hhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHH
Confidence 344556666665554 456666666666655 678999999999999999998876 679999999999999999999
Q ss_pred HhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc-----------CcHHHHHHHHccCCCCeEEEEe
Q 026547 116 KKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV-----------NYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 116 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+..+. .+++++++|+.+.++... ..++||.|++..... ....+++.+.+.|+|||.+++.
T Consensus 85 ~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 85 EEEGL-TNLRLLCGDAVEVLLDMF----PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHcCC-CCEEEEecCHHHHHHHHc----CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 88877 469999999944444221 247899998853211 1467899999999999999885
No 24
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.66 E-value=4.3e-15 Score=131.34 Aligned_cols=162 Identities=22% Similarity=0.259 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
.....++..+....++.+|||+|||+|..+.+++..+...++|+++|+++.+++.++++++..|+.+ ++++++|+.+..
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~ 316 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLL 316 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcc
Confidence 3445555555666678899999999999999999987656899999999999999999999999864 999999987653
Q ss_pred HHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCCCCcccC
Q 026547 136 DQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLWGGTVAM 190 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~ 190 (237)
.... ...++||.|++|.+.+. ..+.++.+.+.|+|||.++...+....
T Consensus 317 ~~~~---~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~---- 389 (434)
T PRK14901 317 ELKP---QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP---- 389 (434)
T ss_pred cccc---cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh----
Confidence 2110 01368999999965321 135688888999999999998876422
Q ss_pred CCCCCCccccchHHHHHHHHHHhhcCCCceEE-----eeec---CCceEEEEEcC
Q 026547 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLS-----HVPL---GDGITICWRIF 237 (237)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~lp~---~~Gl~i~~~~~ 237 (237)
......+...+..+|+|... +.|- .+|+.+++.+|
T Consensus 390 ------------~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 390 ------------AENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred ------------hhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 12234445556678888654 4453 49999997654
No 25
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.1e-15 Score=120.84 Aligned_cols=122 Identities=17% Similarity=0.295 Sum_probs=107.9
Q ss_pred ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
-.+.|....++...+...++.+|||.|+|+|..+.+||++..+.++|+++|+.+++++.|++|++..++.+++++..+|.
T Consensus 76 QiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv 155 (256)
T COG2519 76 QIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV 155 (256)
T ss_pred ceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc
Confidence 34567777788888899999999999999999999999998878999999999999999999999999998899999998
Q ss_pred hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
.+... .+.||.||+|.. +.+++++.+.+.|+|||.+++-...
T Consensus 156 ~~~~~--------~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 156 REGID--------EEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred ccccc--------ccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 77643 369999999975 5579999999999999999986544
No 26
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.65 E-value=1e-14 Score=128.57 Aligned_cols=125 Identities=21% Similarity=0.328 Sum_probs=101.2
Q ss_pred cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
.+......++..+....++.+|||+|||+|..|.+++..+...++|+++|+++.+++.+++++++.|+. +++++++|+.
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~ 298 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAE 298 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 344555566666677778889999999999999999998865789999999999999999999999985 4899999987
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
+..... .++||.|++|.+.+. ..+.++.+.+.|+|||.++...+.+
T Consensus 299 ~l~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 299 RLTEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hhhhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 653222 368999999965422 1345778889999999999998874
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.64 E-value=2.2e-15 Score=114.73 Aligned_cols=108 Identities=26% Similarity=0.373 Sum_probs=89.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.+..+|||+|||+|..+..++....++++++|+|+++++++.|++.+++.+.. +++++++|+.+ ++.. . .++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~----~-~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQE----L-EEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGC----S-STTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-cccc----c-CCCe
Confidence 35789999999999999999955444889999999999999999999999987 79999999988 4321 0 1699
Q ss_pred eEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 149 DYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 149 D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
|+|+..... .....+++.+.++|++||.+++.+..
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999998643 33457899999999999999998765
No 28
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.63 E-value=1.7e-15 Score=120.66 Aligned_cols=117 Identities=25% Similarity=0.327 Sum_probs=91.3
Q ss_pred ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
..+.|..-..+..++...++.+|||||||+||.+..++....+.++|++||.++..++.|+++++..+.. +|+++++|.
T Consensus 54 ~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg 132 (209)
T PF01135_consen 54 TISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDG 132 (209)
T ss_dssp EE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-G
T ss_pred echHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcch
Confidence 3455666666666777888999999999999999999988776789999999999999999999999975 699999998
Q ss_pred hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
..-++. ..+||.|++.+.....+ +.+.+.|++||.+|+
T Consensus 133 ~~g~~~-------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 133 SEGWPE-------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVA 170 (209)
T ss_dssp GGTTGG-------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEE
T ss_pred hhcccc-------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEE
Confidence 776554 37999999998766554 346678899999997
No 29
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.63 E-value=1.7e-14 Score=128.06 Aligned_cols=125 Identities=21% Similarity=0.274 Sum_probs=100.8
Q ss_pred cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
.+......++..++...++.+|||+|||+|..++++++.++..++|+++|+++.+++.++++++..|+.+ ++++++|+.
T Consensus 233 ~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~ 311 (444)
T PRK14902 233 TIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDAR 311 (444)
T ss_pred EEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcc
Confidence 3445556666666677778899999999999999999987547899999999999999999999999865 999999987
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
+....+ .++||+|++|.+... ..++++.+.++|+|||.++...+.+
T Consensus 312 ~~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 312 KVHEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cccchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 764333 268999999975321 1346888889999999999887654
No 30
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=4e-15 Score=122.14 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=100.9
Q ss_pred cccHHHHHHHHHH---HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec
Q 026547 53 STAPDAGQLMAML---LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES 129 (237)
Q Consensus 53 ~~~~~~~~~l~~l---~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (237)
.+...+...+..+ +.+.++.+|||||||.|..++++|+.+ +.+|+|+++|++..+.+++.++..|+..+++++..
T Consensus 52 tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~ 129 (283)
T COG2230 52 TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQ 129 (283)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEec
Confidence 3444444444444 446788999999999999999999986 57999999999999999999999999889999999
Q ss_pred cchHHHHHHhhcCCCCCceeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 130 EALSVLDQLLKDSENEGSFDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
|..++ .++||-|+.- ....+++.||+.+.+.|+|||.++++.+.-
T Consensus 130 d~rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 130 DYRDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred ccccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 98777 3669999754 246779999999999999999999998864
No 31
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.63 E-value=3.9e-14 Score=117.38 Aligned_cols=122 Identities=15% Similarity=0.215 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (237)
......+...+....++.+|||+|||+|..+..++..+...+.|+++|+++.+++.++++++..|+. ++.+++.|+.+.
T Consensus 56 qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~ 134 (264)
T TIGR00446 56 QEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVF 134 (264)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHh
Confidence 3444444444556667789999999999999999998865689999999999999999999999985 499999998665
Q ss_pred HHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 135 LDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
... .++||.|++|.+.+. ..++++.+.++|+|||.|+...+..
T Consensus 135 ~~~-------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 135 GAA-------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred hhh-------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 321 357999999965432 1347788889999999999987764
No 32
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.61 E-value=9.5e-15 Score=113.32 Aligned_cols=110 Identities=21% Similarity=0.368 Sum_probs=88.9
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547 60 QLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL 139 (237)
Q Consensus 60 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 139 (237)
++|...+...+.++|||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++..++.+ ++++..|..+..+
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--- 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--- 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC---
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc---
Confidence 3444444444788999999999999999999877 6789999999999999999999999877 9999999876543
Q ss_pred hcCCCCCceeEEEEeCCCc--------CcHHHHHHHHccCCCCeEEEE
Q 026547 140 KDSENEGSFDYAFVDADKV--------NYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~ 179 (237)
.++||+|+++.+.. ....+++.+.+.|+|||.+++
T Consensus 96 -----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 -----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp -----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 48999999985421 245778888899999998854
No 33
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.61 E-value=1.6e-14 Score=119.46 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=88.8
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh--cCCCCcEEEEeccchHHHHHHhhc
Q 026547 64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK--AGVDHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~ 141 (237)
.+....++.+|||+|||+|..+..+++..++.++|+++|++++|++.|+++... .+..++++++++|+.+. +
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p----- 140 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P----- 140 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-----
Confidence 344556778999999999999999988765467999999999999999876542 22234699999998664 1
Q ss_pred CCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 142 SENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 142 ~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+..++||+|++... ..+...+++++.+.|+|||.+++.+..
T Consensus 141 -~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 141 -FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred -CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 22578999987643 345678999999999999999887765
No 34
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.61 E-value=1.1e-14 Score=120.11 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=87.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++.+|||+|||+|..+..+++. +.+|+++|+++++++.|+++++..|+.++++++++|+.+..+.. .++|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV 113 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence 45679999999999999999984 56999999999999999999999888788999999998764322 4789
Q ss_pred eEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEe
Q 026547 149 DYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 149 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
|+|++... ..+...+++.+.++|+|||.+++.
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 99998754 234568899999999999999764
No 35
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.60 E-value=2.4e-14 Score=116.37 Aligned_cols=113 Identities=18% Similarity=0.353 Sum_probs=91.6
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547 62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 141 (237)
+.......++.+|||+|||+|..+..+++..++.++|+++|+++.+++.++++++..+. ++++++++|+.+..
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~------ 109 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP------ 109 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC------
Confidence 33444555678999999999999999998876578999999999999999999988776 56999999987642
Q ss_pred CCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 142 SENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 142 ~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
...++||+|++... ..++..+++.+.+.|+|||.+++.+.
T Consensus 110 -~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 110 -FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred -CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 12478999987643 34567889999999999999987543
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.60 E-value=5.9e-15 Score=122.39 Aligned_cols=109 Identities=21% Similarity=0.310 Sum_probs=85.0
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
+.+.++.+|||||||.|..+.++++.. +++|++|.+|++..+.+++.+++.|+.+++++..+|..++ .
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------~ 125 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------P 125 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------C
Confidence 346788899999999999999999975 5799999999999999999999999999999999998765 3
Q ss_pred CceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 146 GSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 146 ~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
.+||.|+.-. ...+++.+|+.+.++|+|||.++++.+....
T Consensus 126 ~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 6999997543 3456789999999999999999998776433
No 37
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.60 E-value=5.2e-14 Score=124.83 Aligned_cols=121 Identities=23% Similarity=0.229 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (237)
......+...+....++.+|||+|||+|..+.+++..++..++|+++|+++.+++.+++++++.|+. +++++++|+.+.
T Consensus 235 qd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~ 313 (445)
T PRK14904 235 QNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSF 313 (445)
T ss_pred eCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccc
Confidence 3334444445555667789999999999999999988765679999999999999999999999985 599999998765
Q ss_pred HHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 135 LDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
.+ ..+||.|++|.+.+. ...+++.+.+.|+|||.+++..+..
T Consensus 314 ~~--------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 314 SP--------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred cc--------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 32 368999999854311 1246888889999999999988764
No 38
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.60 E-value=4.2e-14 Score=124.80 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=96.6
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (237)
......++..+....++.+|||+|||+|+.+.++++.++ .++|+++|+++.+++.++++++..|+..++.+..+|..+.
T Consensus 223 Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP 301 (426)
T ss_pred ECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence 344555666666777788999999999999999999887 7899999999999999999999999864455577776543
Q ss_pred HHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 135 LDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
.... ..++||.|++|++.+. ...+++.++++|+|||.+++..+.+
T Consensus 302 ~~~~-----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 302 SQWA-----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccc-----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2100 1368999999864322 1357888889999999999998875
No 39
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.59 E-value=7.1e-14 Score=110.73 Aligned_cols=106 Identities=21% Similarity=0.322 Sum_probs=88.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.+...+||||||+|..+..+++..| +..|+++|+++.+++.|++++...++. +++++++|+.+.+.... ..+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~ 88 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSL 88 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCce
Confidence 3566999999999999999999887 789999999999999999999988875 69999999988765442 13589
Q ss_pred eEEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEe
Q 026547 149 DYAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 149 D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~ 180 (237)
|.|+++.+... ...+++.+.+.|+|||.+++.
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 99998743211 257899999999999999874
No 40
>PRK00811 spermidine synthase; Provisional
Probab=99.59 E-value=6.7e-14 Score=117.01 Aligned_cols=106 Identities=20% Similarity=0.257 Sum_probs=87.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--C--CCcEEEEeccchHHHHHHhhcCC
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--V--DHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
..++++||+||||.|..+.+++++.+ ..+|++||+++.+++.|++++...+ . .++++++.+|+.+++...
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~----- 147 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET----- 147 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----
Confidence 35788999999999999999987633 5699999999999999999987543 2 468999999999987652
Q ss_pred CCCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEe
Q 026547 144 NEGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~ 180 (237)
.++||+|++|..... ..++++.+.+.|+|||++++.
T Consensus 148 -~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 -ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred -CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 478999999863221 267889999999999999975
No 41
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.59 E-value=3.9e-14 Score=113.73 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=92.6
Q ss_pred cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
.+.+.....+..++...++.+|||+|||+|+.+..+++.. .+|+++|+++++++.++++++..++.+ ++++++|+.
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~ 136 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW 136 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence 3566776777777777788899999999999999888753 489999999999999999999988754 999999986
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+.++. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 137 ~~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 137 KGWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred cCCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 54331 3789999998765443 45677899999999885
No 42
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.59 E-value=2.3e-14 Score=116.53 Aligned_cols=131 Identities=20% Similarity=0.287 Sum_probs=99.5
Q ss_pred HHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC
Q 026547 43 VTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH 122 (237)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 122 (237)
++....+.--.+.+....++.....+.++.+|||.|+|+|..+.+|++.+.+.++|++.|..++.++.|+++++..|+.+
T Consensus 13 ~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~ 92 (247)
T PF08704_consen 13 WTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDD 92 (247)
T ss_dssp HHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCC
Confidence 34444333334677888888888899999999999999999999999998879999999999999999999999999988
Q ss_pred cEEEEeccchH-HHH-HHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccC-CCCeEEEEeC
Q 026547 123 KINFIESEALS-VLD-QLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLL-KVGGIAVYDN 181 (237)
Q Consensus 123 ~v~~~~~d~~~-~~~-~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L-~~gG~lv~~~ 181 (237)
+|++.+.|..+ -.. .+ ...+|.||+|...+ ...+..+.+.| ++||.|++-.
T Consensus 93 ~v~~~~~Dv~~~g~~~~~------~~~~DavfLDlp~P--w~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 93 NVTVHHRDVCEEGFDEEL------ESDFDAVFLDLPDP--WEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp TEEEEES-GGCG--STT-------TTSEEEEEEESSSG--GGGHHHHHHHE-EEEEEEEEEE
T ss_pred CceeEecceecccccccc------cCcccEEEEeCCCH--HHHHHHHHHHHhcCCceEEEEC
Confidence 99999999853 221 11 36899999997644 56788888999 8999998743
No 43
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.59 E-value=1.2e-13 Score=115.62 Aligned_cols=119 Identities=13% Similarity=0.246 Sum_probs=92.7
Q ss_pred ccHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec
Q 026547 54 TAPDAGQLMAMLLK----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES 129 (237)
Q Consensus 54 ~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (237)
..+.++.++...+. ..++.+|||+|||+|..++.+++..+ +.+|+++|+++.+++.|+++++..++.++++++++
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~ 179 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS 179 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 34556666655433 23457999999999999999999876 78999999999999999999999998778999999
Q ss_pred cchHHHHHHhhcCCCCCceeEEEEeCCC----------------------------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547 130 EALSVLDQLLKDSENEGSFDYAFVDADK----------------------------VNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
|..+.++ .++||+|+++.+. ..+..+++.+.+.|+|||.+++.-
T Consensus 180 D~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 180 DLFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred chhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9865432 3589999987321 012456777778999999999863
No 44
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.59 E-value=7.1e-14 Score=123.36 Aligned_cols=123 Identities=22% Similarity=0.257 Sum_probs=96.8
Q ss_pred ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
+......+...++...++.+|||+|||+|..+.++++..+ +++|+++|+++.+++.++++++..|+. ++++++|+.+
T Consensus 228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~ 304 (427)
T PRK10901 228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARD 304 (427)
T ss_pred EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCccc
Confidence 3444455555666677788999999999999999999876 589999999999999999999998874 7889999876
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 134 VLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
..... ..++||.|++|.+... ...+++.+.+.|+|||.+++..+..
T Consensus 305 ~~~~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 305 PAQWW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred chhhc-----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 43211 1368999999875321 1257888889999999999987754
No 45
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.58 E-value=9.9e-14 Score=108.58 Aligned_cols=156 Identities=19% Similarity=0.273 Sum_probs=121.0
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccH--HHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGY--SLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~--~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
.|..++|+..|+...+.+.++|++|+.|. .++.|+.+. ..+++++||.++++.+...++.+...+..+.++|+.++.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 57789999999999999999999887553 344444332 237899999999999989999999999888789999985
Q ss_pred -hHHHHHHhhcCCCCCceeEEEEeCCCcCcH-HHHHHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHH
Q 026547 132 -LSVLDQLLKDSENEGSFDYAFVDADKVNYW-NYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDL 209 (237)
Q Consensus 132 -~~~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 209 (237)
.+.++.+ ...|++++|+...++. .+|+.+ ++-+.|.++|+.|.+.++. .--.|
T Consensus 106 ~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~-----------------~~~~w 160 (218)
T PF07279_consen 106 PEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST-----------------NGFSW 160 (218)
T ss_pred HHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc-----------------CCccH
Confidence 4577665 7899999999887777 666654 5556778888899864321 01134
Q ss_pred HHHhhcCCCceEEeeecCCceEEEEE
Q 026547 210 NRSLADDPRIQLSHVPLGDGITICWR 235 (237)
Q Consensus 210 ~~~l~~~~~~~~~~lp~~~Gl~i~~~ 235 (237)
...+...+.+.+++||+|.||.+++-
T Consensus 161 ~~~~~~~r~Vrsv~LPIG~GleVt~i 186 (218)
T PF07279_consen 161 RSVLRGRRVVRSVFLPIGKGLEVTRI 186 (218)
T ss_pred HHhcCCCCceeEEEeccCCCeEEEEE
Confidence 45556678899999999999999874
No 46
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.58 E-value=2.7e-14 Score=103.66 Aligned_cols=102 Identities=23% Similarity=0.415 Sum_probs=85.1
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
+.+|||+|||+|..++.+++.. ..+++++|+++..++.++.++...+..++++++++|..+..+.+ ...+||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEE
Confidence 3589999999999999999875 47999999999999999999999998888999999998876433 2589999
Q ss_pred EEEeCCCc-----------CcHHHHHHHHccCCCCeEEEE
Q 026547 151 AFVDADKV-----------NYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 151 i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~ 179 (237)
|+.+.+-. .+..+++.+.++|+|||++++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99985422 136789999999999999876
No 47
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.57 E-value=2.6e-15 Score=107.39 Aligned_cols=102 Identities=30% Similarity=0.561 Sum_probs=51.3
Q ss_pred EEEcccccHHHHHHHhhCCCCC--EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547 75 IEIGVFTGYSLLLTALTIPEDG--QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF 152 (237)
Q Consensus 75 LeiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 152 (237)
||||+..|.++++++++++++. +++++|..+. .+.+++.+++.++.+++++++++..+.++.+. .++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence 7999999999999999887654 7999999986 44556666667777789999999999988773 27999999
Q ss_pred EeCCC--cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 153 VDADK--VNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 153 id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+|+.+ +.....++.+++.|+|||+|++||+
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 99976 4456788999999999999999984
No 48
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=4.8e-14 Score=120.93 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=88.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++.+|||||||+|..+..+++.. +.+|+++|+++.+++.++++.+..++.++++++++|+.+.. +..++|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-------~~~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-------FEDGQF 187 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-------CCCCCc
Confidence 456799999999999999999865 56999999999999999999988888778999999987641 225799
Q ss_pred eEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 149 DYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 149 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
|+|++... ..+...+++++.++|+|||.+++.+..
T Consensus 188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99987543 234568999999999999999987643
No 49
>PRK01581 speE spermidine synthase; Validated
Probab=99.56 E-value=1.3e-13 Score=116.95 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=87.0
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH--H---hcCC-CCcEEEEeccchHHHHHHh
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI--K---KAGV-DHKINFIESEALSVLDQLL 139 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~--~---~~~~-~~~v~~~~~d~~~~~~~~~ 139 (237)
....++++||+||||.|+.+..++++.+ ..+|++||+++++++.|+++. . ...+ .++++++.+|+.+++...
T Consensus 146 ~~h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~- 223 (374)
T PRK01581 146 SKVIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP- 223 (374)
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-
Confidence 3456789999999999998888887533 679999999999999999732 1 1122 478999999999988754
Q ss_pred hcCCCCCceeEEEEeCCCcC--------cHHHHHHHHccCCCCeEEEEeC
Q 026547 140 KDSENEGSFDYAFVDADKVN--------YWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.++||+|++|..... ..++++.+.+.|+|||++++..
T Consensus 224 -----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 224 -----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred -----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 478999999964221 2578999999999999998863
No 50
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=4.4e-14 Score=114.08 Aligned_cols=118 Identities=20% Similarity=0.305 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
...+-+|..++.....++|||+|||+|..++.+|...+ ..+|++||+++++++.|+++++.+++.++++++++|..++.
T Consensus 30 ~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 30 GTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL 108 (248)
T ss_pred ccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh
Confidence 34566788888888899999999999999999999876 58999999999999999999999999999999999999887
Q ss_pred HHHhhcCCCCCceeEEEEeCC-----C----------------cCcHHHHHHHHccCCCCeEEEE
Q 026547 136 DQLLKDSENEGSFDYAFVDAD-----K----------------VNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~-----~----------------~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
+.. ...+||+|+++.+ . ....++++.+.++|++||.+.+
T Consensus 109 ~~~-----~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 109 KAL-----VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred hcc-----cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 765 2457999998732 1 1246788888899999999876
No 51
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.55 E-value=6.7e-14 Score=114.98 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=86.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
.++.+|||+|||+|..+..+++.+ .++.+|+++|+++.+++.|+++++..+...+++++++|+.+.. ...
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence 466799999999999999988753 2378999999999999999999998887778999999986642 256
Q ss_pred eeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 148 FDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 148 ~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+|+|++.... .....+++++.+.|+|||.+++.+..
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 8988764321 12357899999999999999997754
No 52
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.54 E-value=1.6e-13 Score=112.22 Aligned_cols=107 Identities=12% Similarity=0.121 Sum_probs=86.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
.++.+|||+|||+|..+..+++.++ ++.+++++|+++.+++.|+++++..+...+++++++|+.+.. ..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 122 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKN 122 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCC
Confidence 3567999999999999999998753 378999999999999999999988776667999999987652 256
Q ss_pred eeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 148 FDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 148 ~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
+|+|++..... +...+++.+.+.|+|||.+++.+...
T Consensus 123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 88887654322 23578999999999999999987653
No 53
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=1.1e-13 Score=116.85 Aligned_cols=117 Identities=15% Similarity=0.260 Sum_probs=91.1
Q ss_pred cHHHHHHHHHHHh-h-c--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc
Q 026547 55 APDAGQLMAMLLK-L-V--NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE 130 (237)
Q Consensus 55 ~~~~~~~l~~l~~-~-~--~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 130 (237)
.+.+..++..... . . ++.+|||+|||+|..++.++...+ +.+|+++|+++.+++.|+++++..++.++++++++|
T Consensus 114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D 192 (307)
T PRK11805 114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD 192 (307)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 3455555554332 1 1 236899999999999999998876 789999999999999999999999987789999999
Q ss_pred chHHHHHHhhcCCCCCceeEEEEeCCC----------------------------cCcHHHHHHHHccCCCCeEEEEe
Q 026547 131 ALSVLDQLLKDSENEGSFDYAFVDADK----------------------------VNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
..+.++ .++||+|+++.+. ..+..+++.+.+.|+|||.+++.
T Consensus 193 ~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 193 LFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred hhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 866432 2589999987321 01245677788999999999985
No 54
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.54 E-value=1.2e-13 Score=115.03 Aligned_cols=113 Identities=18% Similarity=0.297 Sum_probs=91.7
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
+...++.+|||+|||+|..+..+++.....++|+++|+++.+++.|+++.+..+.. +++++.+|+.+. + ...
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~------~~~ 144 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P------VAD 144 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C------CCC
Confidence 44567889999999999998888877655679999999999999999999888874 689999997553 1 124
Q ss_pred CceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 146 GSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 146 ~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
++||+|+.+.. ..+....++++.++|+|||.+++.++...+
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 68999987653 234567899999999999999998876543
No 55
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.53 E-value=6.1e-14 Score=111.65 Aligned_cols=116 Identities=17% Similarity=0.216 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 56 PDAGQLMAMLLKL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 56 ~~~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
+....++...+.. ..+.+|||+|||-|..+..+|+. +..|+++|++++.++.|+.+..+.|+. +++.+..++
T Consensus 42 ~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~e 116 (243)
T COG2227 42 PLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVE 116 (243)
T ss_pred cchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHH
Confidence 3333344444443 47889999999999999999984 689999999999999999999998874 778888887
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+.... .++||+|++-.. ..+...+++.|.+++||||.++++.+.
T Consensus 117 dl~~~-------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 117 DLASA-------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HHHhc-------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 76542 379999987643 445678999999999999999999885
No 56
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=1.3e-13 Score=109.48 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=81.4
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.+++..+..++. ++++.+.|..+.. + .+
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~--~------~~ 94 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT--F------DG 94 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC--c------CC
Confidence 3446789999999999999999974 569999999999999999999888874 4888888876541 1 36
Q ss_pred ceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEE
Q 026547 147 SFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 147 ~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
+||+|++.... .....+++.+.++|+|||.+++
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 79999876432 2346889999999999998544
No 57
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.52 E-value=7.1e-14 Score=113.05 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=87.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA 151 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i 151 (237)
++|||||||+|..+..+++..+ +.+|+++|+++++++.++++++..|+.++++++.+|..+.. . .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--~------~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--F------PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--C------CCCCCEe
Confidence 4799999999999999998876 67999999999999999999999998889999999875431 1 3689999
Q ss_pred EEeC---CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 152 FVDA---DKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 152 ~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+... ...+...+++.+.++|+|||.+++.+..
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 8642 2345678999999999999999998764
No 58
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.52 E-value=1e-13 Score=117.32 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=85.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
++.+|||||||+|..+..+++. +.+|++||+++++++.|+++.+..+...+++++++++.+... ..++||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~FD 200 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKFD 200 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCCC
Confidence 4569999999999999999863 679999999999999999887665555579999999866521 147899
Q ss_pred EEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 150 YAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 150 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+|++... ..+...+++.+.++|+|||.+++....
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9997543 345678999999999999999998654
No 59
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.52 E-value=1.9e-13 Score=108.34 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=80.2
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
.+...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.++++.+..++. +++..+|.... + +
T Consensus 25 ~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~------ 91 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L------ 91 (195)
T ss_pred HhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c------
Confidence 334556789999999999999999974 569999999999999999988877763 77777776432 1 1
Q ss_pred CCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEe
Q 026547 145 EGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 145 ~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
.++||+|++...- .....+++.+.++|+|||.+++-
T Consensus 92 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3689999865321 23467899999999999985553
No 60
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.52 E-value=2.8e-13 Score=117.85 Aligned_cols=111 Identities=20% Similarity=0.326 Sum_probs=89.8
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcCCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
...++++|||+|||+|..++..+.. ...+|+++|+++.+++.|+++++.+++. ++++++++|+.+++..+... .
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~ 291 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---G 291 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---C
Confidence 3457889999999999998876642 2459999999999999999999999986 47999999999988766432 3
Q ss_pred CceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 146 GSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 146 ~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
++||+|++|.+. ..+..+++.+.++|+|||++++..+
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 689999999653 1245566677899999999997654
No 61
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.52 E-value=7.7e-14 Score=96.98 Aligned_cols=92 Identities=23% Similarity=0.278 Sum_probs=73.6
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe
Q 026547 75 IEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVD 154 (237)
Q Consensus 75 LeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id 154 (237)
||+|||+|..+..+++. + ..+|+++|+++++++.+++..... .+.++++|+.+. + +.+++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~------~~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-P------FPDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-S------S-TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-c------cccccccccccc
Confidence 89999999999999987 3 789999999999999999987543 366899998776 2 236899999987
Q ss_pred CCC---cCcHHHHHHHHccCCCCeEEEE
Q 026547 155 ADK---VNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 155 ~~~---~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
... .+...+++++.+.|||||.+++
T Consensus 68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 532 4567899999999999999986
No 62
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=2.5e-13 Score=114.94 Aligned_cols=115 Identities=21% Similarity=0.349 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (237)
.+.....+...+...++.+|||+|||+|+.+..+++..+..++|+++|+++++++.|+++++..|. +++.++++|+.+.
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~ 143 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYG 143 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhc
Confidence 344333444444566778999999999999999998876457899999999999999999999887 4699999998765
Q ss_pred HHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 135 LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
.+. ..+||+|+++....+. .+.+.+.|+|||.+++.
T Consensus 144 ~~~-------~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 144 VPE-------FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP 179 (322)
T ss_pred ccc-------cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence 432 2679999998654443 34567889999998874
No 63
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.50 E-value=1.8e-13 Score=113.05 Aligned_cols=99 Identities=22% Similarity=0.308 Sum_probs=82.0
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
...++.+|||||||+|..+..++...+ +.+|+++|+++.+++.+++++ ++++++.+|+.+..+ ..
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~ 92 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQ 92 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CC
Confidence 445678999999999999999998876 789999999999999998864 358899999865421 36
Q ss_pred ceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEe
Q 026547 147 SFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 147 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+||+|++... ..+...+++.+.+.|+|||.+++.
T Consensus 93 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 93 ALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8999998753 334578899999999999999885
No 64
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.50 E-value=2.8e-13 Score=113.66 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=85.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++++|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++++..++.+++.+..++.... ..++|
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---------~~~~f 226 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---------IEGKA 226 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---------cCCCc
Confidence 46689999999999999888764 3 4599999999999999999999988877777777763221 14789
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
|+|+.+........++..+.+.|+|||.+++..+.
T Consensus 227 DlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 227 DVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred eEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 99998876666678889999999999999998764
No 65
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.50 E-value=1.5e-12 Score=108.34 Aligned_cols=106 Identities=21% Similarity=0.237 Sum_probs=87.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC---CCcEEEEeccchHHHHHHhhcCCC
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV---DHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
..++++||+||||+|..+..++++.+ ..+++++|+++++++.+++++...+. .++++++.+|+.+++...
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------ 142 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------ 142 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence 44678999999999999988887653 56899999999999999998865431 357899999998887654
Q ss_pred CCceeEEEEeCCCc-----C--cHHHHHHHHccCCCCeEEEEe
Q 026547 145 EGSFDYAFVDADKV-----N--YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 145 ~~~~D~i~id~~~~-----~--~~~~~~~~~~~L~~gG~lv~~ 180 (237)
.++||+|++|.... . ..++++.+.+.|+|||++++.
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 47999999986421 1 357889999999999999986
No 66
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.50 E-value=7.2e-14 Score=98.99 Aligned_cols=93 Identities=20% Similarity=0.363 Sum_probs=73.0
Q ss_pred EEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547 74 TIEIGVFTGYSLLLTALTIPE--DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA 151 (237)
Q Consensus 74 vLeiG~G~G~~~~~la~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i 151 (237)
|||+|||+|..+..++..++. ..+++++|+++++++.++++....+. +++++++|+.++. .. .++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~-~~------~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLP-FS------DGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHH-HH------SSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCc-cc------CCCeeEE
Confidence 799999999999999988732 37999999999999999999988665 6899999997753 22 4799999
Q ss_pred EEeCC------CcCcHHHHHHHHccCCCCe
Q 026547 152 FVDAD------KVNYWNYHERLMKLLKVGG 175 (237)
Q Consensus 152 ~id~~------~~~~~~~~~~~~~~L~~gG 175 (237)
++... ......+++++.++|+|||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 98432 2234678999999999998
No 67
>PLN02366 spermidine synthase
Probab=99.50 E-value=4.1e-13 Score=113.04 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=89.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--C-CCcEEEEeccchHHHHHHhhcCCC
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--V-DHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
..++++||+||||.|..+.+++++ +...+|+.+|+++.+++.+++++...+ + +++++++.+|+.+++....
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~----- 162 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP----- 162 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----
Confidence 457899999999999999999887 435799999999999999999987542 2 4689999999999886531
Q ss_pred CCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEeC
Q 026547 145 EGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 145 ~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.++||+|++|..... ..++++.+.+.|+|||+++...
T Consensus 163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 368999999965422 3578999999999999998753
No 68
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.49 E-value=1.3e-12 Score=102.10 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=84.8
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547 60 QLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL 139 (237)
Q Consensus 60 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 139 (237)
.++.......++++|||+|||+|..+..++... .+|+++|+++.+++.++++++..+. +++++.+|..+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---- 79 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence 444444556677899999999999999998753 3899999999999999999987775 4888999876542
Q ss_pred hcCCCCCceeEEEEeCCCc------------------------CcHHHHHHHHccCCCCeEEEEeC
Q 026547 140 KDSENEGSFDYAFVDADKV------------------------NYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.++||+|+.+.... ....+++.+.++|+|||.+++..
T Consensus 80 -----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 -----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred -----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 36899999874311 03467888889999999988754
No 69
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=107.50 Aligned_cols=102 Identities=22% Similarity=0.234 Sum_probs=87.6
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
.+...++.+|+|+|||.|.+|..+++..| .+.|+|+|-|++|++.|++.+ ++++|..+|+.++-+
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p-------- 89 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP-------- 89 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------
Confidence 34556788999999999999999999998 899999999999999998765 468999999988743
Q ss_pred CCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 145 EGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 145 ~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
..+.|++|.++. ..+....|.++...|.|||+|.+.=
T Consensus 90 ~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 90 EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 478999998754 4556788999999999999999863
No 70
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.49 E-value=5.8e-13 Score=111.57 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhh---cCC-CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 56 PDAGQLMAMLLKL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 56 ~~~~~~l~~l~~~---~~~-~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
+.+..++...... .++ .+|||+|||+|..++.++...+ +.+|+++|+++.+++.|+++++..++.++++++++|.
T Consensus 96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~ 174 (284)
T TIGR00536 96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL 174 (284)
T ss_pred CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 4455555443321 223 6899999999999999999876 7899999999999999999999998877799999998
Q ss_pred hHHHHHHhhcCCCCCceeEEEEeCCC----------------------------cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 132 LSVLDQLLKDSENEGSFDYAFVDADK----------------------------VNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
.+.++ ..+||+|+.+.+. ..+..+++.+.+.|+|||++++.-.
T Consensus 175 ~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 175 FEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred hccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 66432 2489999986210 0134567777789999999998643
No 71
>PRK04266 fibrillarin; Provisional
Probab=99.49 E-value=3.7e-13 Score=108.76 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=86.9
Q ss_pred HHHHHHHH--HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 58 AGQLMAML--LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 58 ~~~~l~~l--~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
...++..+ +...++.+|||+|||+|..+..+++..+ .++|+++|+++++++.+.++.+.. +++.++.+|+.+..
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~ 133 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPE 133 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcc
Confidence 34444434 5566788999999999999999999886 789999999999999887766543 45889999986521
Q ss_pred HHHhhcCCCCCceeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 136 DQLLKDSENEGSFDYAFVDADKVN-YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
.... ..++||+|+.+....+ ....++.+.+.|+|||.+++. +.|
T Consensus 134 ~~~~----l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~-v~~ 178 (226)
T PRK04266 134 RYAH----VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA-IKA 178 (226)
T ss_pred hhhh----ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE-Eec
Confidence 1110 1357999998764322 234578999999999999985 444
No 72
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.49 E-value=4.4e-13 Score=115.54 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=82.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC--CcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD--HKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
...+|||+|||+|..++.+++..| ..+|+++|.++.+++.++++++.++.. .+++++.+|+...++ .++
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~ 298 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFR 298 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCC
Confidence 346999999999999999999877 789999999999999999999877643 368999988755421 358
Q ss_pred eeEEEEeCCCc--------CcHHHHHHHHccCCCCeEEEEe
Q 026547 148 FDYAFVDADKV--------NYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 148 ~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
||+|+++.+-. ...++|+.+.+.|+|||.+.+.
T Consensus 299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 99999974321 1346788889999999988775
No 73
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=2.1e-13 Score=112.51 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=80.0
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
...++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.|++. +++++++|+.+..+ .+
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--------~~ 88 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--------KP 88 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--------CC
Confidence 345678999999999999999998876 78999999999999988762 37889999865421 37
Q ss_pred ceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEe
Q 026547 147 SFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 147 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+||+|++... ..+....++++.+.|+|||.+++.
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 8999998753 345578899999999999999885
No 74
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.48 E-value=2e-12 Score=102.43 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=89.2
Q ss_pred ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
.+.....++..+....++.+|||+|||+|..++.++... ..+|+++|.+++.++.++++++..+.. +++++++|+.+
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~ 113 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALS 113 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHH
Confidence 344444455555554567899999999999998654432 359999999999999999999999874 69999999988
Q ss_pred HHHHHhhcCCCCCceeEEEEeCC-CcC-cHHHHHHHHc--cCCCCeEEEEeC
Q 026547 134 VLDQLLKDSENEGSFDYAFVDAD-KVN-YWNYHERLMK--LLKVGGIAVYDN 181 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D~i~id~~-~~~-~~~~~~~~~~--~L~~gG~lv~~~ 181 (237)
.++.. ..+||+||+|.+ ... ....++.+.+ +|++++++++..
T Consensus 114 ~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 114 FLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred HHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 76432 357999999987 333 3455555553 478999999864
No 75
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.47 E-value=1.1e-12 Score=112.82 Aligned_cols=103 Identities=24% Similarity=0.303 Sum_probs=87.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
.+..+||||||+|..++.+|+..| +..++|+|+++.+++.+.+.+...++. ++.++++|+.+.+..+ ..+++|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCcee
Confidence 456899999999999999999987 789999999999999999999988885 4999999998766543 258999
Q ss_pred EEEEeCCCcC---------cHHHHHHHHccCCCCeEEEE
Q 026547 150 YAFVDADKVN---------YWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 150 ~i~id~~~~~---------~~~~~~~~~~~L~~gG~lv~ 179 (237)
.|++..+.+. ...+++.+.+.|+|||.+.+
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 9998753221 25789999999999999887
No 76
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.3e-13 Score=111.12 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=96.9
Q ss_pred hCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE
Q 026547 46 DHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN 125 (237)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~ 125 (237)
+.+-+.-+......+.|..+.. ++++|||+|||+|..++..++.- ..+|+++|++|..++.+++|.+.+++...++
T Consensus 140 AFGTG~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~ 215 (300)
T COG2264 140 AFGTGTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQ 215 (300)
T ss_pred ccCCCCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhh
Confidence 4444555556666777776655 78899999999999999888753 3579999999999999999999998865344
Q ss_pred EEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 126 FIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 126 ~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
....+..+... .++||+|+.+.-..-...+...+.++++|||.++++.++
T Consensus 216 ~~~~~~~~~~~--------~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 216 AKGFLLLEVPE--------NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred cccccchhhcc--------cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 44444433322 369999998865555667888888999999999999876
No 77
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.47 E-value=5.6e-13 Score=112.86 Aligned_cols=111 Identities=13% Similarity=0.043 Sum_probs=90.3
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547 64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
..+...+..+|||||||+|..++.+++..| +.+++++|. +.+++.+++++++.|+.++++++.+|+.+..
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-------- 212 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-------- 212 (306)
T ss_pred HHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--------
Confidence 334455678999999999999999999987 789999997 7899999999999999889999999986531
Q ss_pred CCCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547 144 NEGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTLWG 185 (237)
Q Consensus 144 ~~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~ 185 (237)
.+.+|+|++..... .....++++.+.|+|||.+++.+..+.
T Consensus 213 -~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 213 -YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred -CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 13479987654322 224689999999999999999887664
No 78
>PRK08317 hypothetical protein; Provisional
Probab=99.45 E-value=5.2e-12 Score=102.61 Aligned_cols=115 Identities=18% Similarity=0.277 Sum_probs=90.0
Q ss_pred HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547 63 AMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS 142 (237)
Q Consensus 63 ~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 142 (237)
...+...++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++... ...+++++.+|+.+.. +
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~--~---- 83 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP--F---- 83 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC--C----
Confidence 3445566778999999999999999998874478999999999999999987332 2356889998875531 1
Q ss_pred CCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 143 ENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 143 ~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
..++||+|++... ..+...+++.+.+.|+|||.+++....+..
T Consensus 84 -~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 129 (241)
T PRK08317 84 -PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDT 129 (241)
T ss_pred -CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCc
Confidence 2478999997643 345678999999999999999998765543
No 79
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.45 E-value=8.3e-13 Score=123.02 Aligned_cols=111 Identities=18% Similarity=0.289 Sum_probs=91.7
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcCC
Q 026547 65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
+....++++|||+|||+|..+++++..- ..+|++||+++.+++.|+++++.+|+. ++++++++|+.+++..+
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~----- 605 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA----- 605 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence 3445578899999999999999999852 347999999999999999999999986 68999999999987654
Q ss_pred CCCceeEEEEeCCC--------------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 144 NEGSFDYAFVDADK--------------VNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 144 ~~~~~D~i~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
..+||+|++|.+. ..+..+++.+.++|+|||++++....
T Consensus 606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3689999999642 12456778888999999999887543
No 80
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.45 E-value=1e-12 Score=108.90 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=84.6
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
....++.+|||||||+|..+..++... +.+|+++|+++.+++.+++++.. .+++.+.++|+.+. +...
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-------~~~~ 115 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-------DFPE 115 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-------CCCC
Confidence 355677899999999999999998753 56999999999999999987643 35799999998643 1224
Q ss_pred CceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 146 GSFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 146 ~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
++||+|++... ..+...+++++.++|+|||.+++.+...
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 78999997421 1255789999999999999999987654
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.45 E-value=6e-12 Score=103.56 Aligned_cols=107 Identities=18% Similarity=0.253 Sum_probs=82.3
Q ss_pred HHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547 60 QLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL 138 (237)
Q Consensus 60 ~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 138 (237)
..+..+.. ..++.+|||+|||+|..++.+++. . ..+|+++|+++.+++.|+++++..++..++.+..++
T Consensus 108 ~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------- 177 (250)
T PRK00517 108 LCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------- 177 (250)
T ss_pred HHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------
Confidence 33444443 347789999999999999887764 2 347999999999999999999988875444433221
Q ss_pred hhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 139 LKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 139 ~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
.+||+|+.+........+++.+.+.|+|||.+++..+.
T Consensus 178 -------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 178 -------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred -------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 37999998776555677888999999999999998654
No 82
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.45 E-value=6.9e-13 Score=102.92 Aligned_cols=124 Identities=19% Similarity=0.294 Sum_probs=83.9
Q ss_pred hhCCCCCccccHHHHHHHHHHH-hhcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC
Q 026547 45 ADHPRAMMSTAPDAGQLMAMLL-KLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD 121 (237)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~l~-~~~~~--~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 121 (237)
..++|.+-....+..+.-..+. ...++ .++||+|||.|..|..||... .+++++|+++..++.|+++++..
T Consensus 15 ~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--- 88 (201)
T PF05401_consen 15 NDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--- 88 (201)
T ss_dssp SSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC---
Confidence 3555554433333333322332 23333 599999999999999999864 59999999999999999988653
Q ss_pred CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCC------CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 122 HKINFIESEALSVLDQLLKDSENEGSFDYAFVDAD------KVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 122 ~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
++|++++.+..+..+ .++||+|++... ......+++.+...|+|||.+|+...
T Consensus 89 ~~V~~~~~dvp~~~P--------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 89 PHVEWIQADVPEFWP--------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSEEEEES-TTT-----------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCeEEEECcCCCCCC--------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 469999999988765 589999998742 12345678888899999999999654
No 83
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.44 E-value=3.1e-12 Score=106.60 Aligned_cols=147 Identities=18% Similarity=0.208 Sum_probs=94.6
Q ss_pred CCcHHHHHHHh---hccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh
Q 026547 15 LQSEELYRYIL---ETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALT 91 (237)
Q Consensus 15 ~~~~~~~~y~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~ 91 (237)
...+-+.+++. +.+..+.++..+-+.+....+.+... .+.....+.+..... .+..+|||+|||+|+.+..++..
T Consensus 29 ~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~-~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~ 106 (272)
T PRK11088 29 CAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQ-PLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADA 106 (272)
T ss_pred cccCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChH-HHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHh
Confidence 33344445543 23334455555555565555544321 122222233322221 24568999999999999999887
Q ss_pred CCCC--CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHc
Q 026547 92 IPED--GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMK 169 (237)
Q Consensus 92 ~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~ 169 (237)
++.. ..++|+|+++.+++.|++.. +++.+.++|+.+. + +..++||+|+..... ..++++.+
T Consensus 107 ~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p------~~~~sfD~I~~~~~~----~~~~e~~r 169 (272)
T PRK11088 107 LPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P------FADQSLDAIIRIYAP----CKAEELAR 169 (272)
T ss_pred cccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C------CcCCceeEEEEecCC----CCHHHHHh
Confidence 6532 37999999999999987753 3578889987653 1 125799999865432 34577889
Q ss_pred cCCCCeEEEEe
Q 026547 170 LLKVGGIAVYD 180 (237)
Q Consensus 170 ~L~~gG~lv~~ 180 (237)
.|+|||.+++.
T Consensus 170 vLkpgG~li~~ 180 (272)
T PRK11088 170 VVKPGGIVITV 180 (272)
T ss_pred hccCCCEEEEE
Confidence 99999999875
No 84
>PLN02823 spermine synthase
Probab=99.44 E-value=1.4e-12 Score=110.99 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=87.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC---CCCcEEEEeccchHHHHHHhhcCCC
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG---VDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
..++++||.||+|.|..+.+++++.+ ..+|+.||+++..++.+++++...+ ..++++++.+|+.+++...
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------ 173 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------ 173 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------
Confidence 34688999999999999999888644 5689999999999999999986432 2478999999999998643
Q ss_pred CCceeEEEEeCCCc---------CcHHHHH-HHHccCCCCeEEEEe
Q 026547 145 EGSFDYAFVDADKV---------NYWNYHE-RLMKLLKVGGIAVYD 180 (237)
Q Consensus 145 ~~~~D~i~id~~~~---------~~~~~~~-~~~~~L~~gG~lv~~ 180 (237)
.++||+||+|.... ...++++ .+.+.|+|||++++.
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 47899999995321 1357888 899999999999875
No 85
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=1.1e-12 Score=110.20 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=80.5
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
..++++|||+|||+|..+.+++.. +.+|+++|+++.+++.++++.+..++ ++++...|..+.. + .++
T Consensus 118 ~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~------~~~ 184 (287)
T PRK12335 118 TVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I------QEE 184 (287)
T ss_pred ccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c------cCC
Confidence 346679999999999999999873 57999999999999999999988887 5888888775431 1 378
Q ss_pred eeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEE
Q 026547 148 FDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 148 ~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
||+|++... ......+++.+.+.|+|||++++
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999987542 23466789999999999998655
No 86
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.44 E-value=1.4e-12 Score=112.35 Aligned_cols=114 Identities=20% Similarity=0.331 Sum_probs=96.5
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcC
Q 026547 65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDS 142 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~ 142 (237)
+.....+++||++-|.||..+++.|.+ ++ +|++||+|...++.|++|++-+|++ .++.++++|+.+++.....+
T Consensus 212 l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~- 287 (393)
T COG1092 212 LGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR- 287 (393)
T ss_pred HhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc-
Confidence 344556899999999999999999875 44 9999999999999999999999985 56899999999999988654
Q ss_pred CCCCceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 143 ENEGSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 143 ~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
..+||+|++|.+. ..+...+..+.++|+|||++++.++..
T Consensus 288 --g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 288 --GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred --CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 4699999999642 235677788889999999999987764
No 87
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=111.06 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=83.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
...+++|||||||+|+.+..++...+ ..|+|+|+++.++..++...+..+...+++++.+++.+... .++
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--------~~~ 189 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--------LKA 189 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--------cCC
Confidence 34678999999999999999988643 36999999999887655443333334579999998866521 378
Q ss_pred eeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 148 FDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 148 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
||+|++.+. ..+...+++.+.+.|+|||.+++++....+
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~ 231 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG 231 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence 999997643 244678999999999999999998765433
No 88
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.43 E-value=1.6e-12 Score=101.75 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=81.4
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
+...++.++||+|||.|..+++||+. +-.|+++|.++..++.+++..++.+++ ++..+.|..+... .
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~--------~ 92 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF--------P 92 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---------T
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc--------c
Confidence 45667889999999999999999984 779999999999999999988888874 8889998766521 3
Q ss_pred CceeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 146 GSFDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 146 ~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+.||+|+.. ......+..++.+...++|||+.++...
T Consensus 93 ~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 93 EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 789999764 2345567889999999999999888544
No 89
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.43 E-value=4e-12 Score=104.43 Aligned_cols=116 Identities=23% Similarity=0.411 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 56 PDAGQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 56 ~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
+....++..+... .++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++. +++++++|+.+
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~ 148 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE 148 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence 3444454444433 2445999999999999999998876 679999999999999999999988875 69999999876
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCCcC-----------------------------cHHHHHHHHccCCCCeEEEEeC
Q 026547 134 VLDQLLKDSENEGSFDYAFVDADKVN-----------------------------YWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D~i~id~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.++ .++||+|+++.+-.. +..+++.+.+.|+|||.+++..
T Consensus 149 ~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 149 PLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred cCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 432 478999998632110 2356788889999999999853
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=99.43 E-value=3.5e-12 Score=100.11 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCc-EEEEeccchHHHHHH
Q 026547 60 QLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHK-INFIESEALSVLDQL 138 (237)
Q Consensus 60 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~ 138 (237)
.++.......++++|||+|||+|..+..++.. +.+|+++|+++++++.+++++...+..++ +.++++|..+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 87 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-- 87 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence 33444444467789999999999999999885 57999999999999999999988887544 8889998766432
Q ss_pred hhcCCCCCceeEEEEeCCCc------------------------CcHHHHHHHHccCCCCeEEEEe
Q 026547 139 LKDSENEGSFDYAFVDADKV------------------------NYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 139 ~~~~~~~~~~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
..+||+|+.+.... ....+++.+.+.|+|||.+++.
T Consensus 88 ------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 88 ------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred ------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 34899998764311 1345788999999999988764
No 91
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.43 E-value=1.8e-12 Score=106.73 Aligned_cols=111 Identities=13% Similarity=0.188 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
...+..+.......++.+|||+|||+|..+..++.. +.+|+++|+++.+++.++++.. ...++++|+.+.
T Consensus 28 ~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~- 97 (251)
T PRK10258 28 RQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL- 97 (251)
T ss_pred HHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-
Confidence 344444444443445679999999999999888763 5799999999999999988642 246788888653
Q ss_pred HHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 136 DQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+ ...++||+|+.... ..+....+.++.+.|+|||.+++...
T Consensus 98 ~------~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 98 P------LATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred c------CCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1 12478999987643 34567889999999999999998754
No 92
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.42 E-value=2.1e-12 Score=105.09 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=89.0
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
...++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+..++++++.+|+.+... ..+
T Consensus 48 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~ 120 (239)
T PRK00216 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-------PDN 120 (239)
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-------CCC
Confidence 3445679999999999999999988765689999999999999999998876666679999999876421 147
Q ss_pred ceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 147 SFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 147 ~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+||+|++.. .......+++.+.+.|++||.+++.+.
T Consensus 121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 899998753 234567889999999999999987654
No 93
>PRK06922 hypothetical protein; Provisional
Probab=99.42 E-value=2.6e-12 Score=116.05 Aligned_cols=114 Identities=16% Similarity=0.238 Sum_probs=88.6
Q ss_pred HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547 63 AMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS 142 (237)
Q Consensus 63 ~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 142 (237)
..+....++.+|||+|||+|..+..+++..+ +.+|+|+|+++.+++.|+++....+ .+++++++|+.+....+
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f---- 483 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF---- 483 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc----
Confidence 3445556788999999999999999998776 8899999999999999998876554 35888999987642112
Q ss_pred CCCCceeEEEEeCC----------------CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 143 ENEGSFDYAFVDAD----------------KVNYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 143 ~~~~~~D~i~id~~----------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
..++||+|++... ......+++.+.+.|+|||.+++.+..+
T Consensus 484 -edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 484 -EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred -CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 2478999986521 1234678899999999999999976543
No 94
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.42 E-value=1.3e-11 Score=97.32 Aligned_cols=121 Identities=10% Similarity=-0.018 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
...+.+...+....++.+|||++||+|..++.++.+.. .+|+++|.++..++.++++++..+..++++++++|+.+.+
T Consensus 35 ~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l 112 (189)
T TIGR00095 35 VVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL 112 (189)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH
Confidence 33444444444455788999999999999999987532 4899999999999999999999998778999999998877
Q ss_pred HHHhhcCCCCCceeEEEEeCCC--cCcHHHHHHHH--ccCCCCeEEEEeC
Q 026547 136 DQLLKDSENEGSFDYAFVDADK--VNYWNYHERLM--KLLKVGGIAVYDN 181 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~~ 181 (237)
..+... ...||+||+|.+- ..+...++.+. .+|+++|++++..
T Consensus 113 ~~~~~~---~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 113 KFLAKK---PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHhhcc---CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 654221 2358999998753 23455566554 4799999999864
No 95
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.42 E-value=3.4e-12 Score=114.68 Aligned_cols=101 Identities=19% Similarity=0.333 Sum_probs=82.3
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
+.+|||+|||+|..++.++...+ +.+|+++|+|+.+++.|+++++..++.++++++++|..+.++ .++||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl 209 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF 209 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence 46899999999999999998876 789999999999999999999998888889999999765432 368999
Q ss_pred EEEeCCC-----------------------------cCcHHHHHHHHccCCCCeEEEEe
Q 026547 151 AFVDADK-----------------------------VNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 151 i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
|+++.+. ..+..+++.+.+.|+|||.+++.
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 9985320 01234556667899999999985
No 96
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.41 E-value=5.5e-12 Score=100.55 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=78.2
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
+....++.+|||+|||+|..+..++...+ +.+++|+|+++++++.|++++ ++++++++|+.+.. .
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~~--------~ 102 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDPF--------K 102 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCCC--------C
Confidence 34455777999999999999999988765 689999999999999998864 24678888876621 2
Q ss_pred CCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547 145 EGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTLWG 185 (237)
Q Consensus 145 ~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~ 185 (237)
.++||+|++...-. ....+++++.+.+ ++.+++.+....
T Consensus 103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred CCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 57999999765422 2356777777776 567777666543
No 97
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.40 E-value=6.5e-13 Score=110.86 Aligned_cols=102 Identities=21% Similarity=0.291 Sum_probs=80.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++++|||+|||+|..++..++. + ..+|+++|++|..++.|++|++.+++.+++.+. ...+. ...+|
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~~ 226 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---------VEGKF 226 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---------CCS-E
T ss_pred cCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---------ccccC
Confidence 45689999999999999988775 2 458999999999999999999999998877653 21122 14899
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
|+|+.+....-.......+.++|+|||.++++.++
T Consensus 227 dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 227 DLVVANILADVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp EEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 99998876666667777788999999999999876
No 98
>PRK14967 putative methyltransferase; Provisional
Probab=99.40 E-value=7.7e-12 Score=101.21 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=79.6
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++++..+. +++++.+|..+.++ .++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~ 101 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRP 101 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCC
Confidence 345679999999999999998874 2 35999999999999999999988776 48888998866432 368
Q ss_pred eeEEEEeCCCc------------------------CcHHHHHHHHccCCCCeEEEEe
Q 026547 148 FDYAFVDADKV------------------------NYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 148 ~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
||+|+++.+.. .+..+++.+.+.|++||.+++-
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999874211 0234677888999999999873
No 99
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.40 E-value=3.6e-12 Score=107.55 Aligned_cols=109 Identities=15% Similarity=0.097 Sum_probs=81.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
..++++|||+|||+|+.+..++...+ ..|+|+|+++.++..++..-+..+...++++..+++.+... ..+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~--------~~~ 188 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE--------LYA 188 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC--------CCC
Confidence 35578999999999999988887532 47999999999987654433333333568888888765421 368
Q ss_pred eeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 148 FDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 148 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
||+||+.+. ..+...+++++.+.|+|||.+++......|
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 999997653 334568999999999999999998765444
No 100
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.39 E-value=4.2e-12 Score=108.68 Aligned_cols=112 Identities=17% Similarity=0.197 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (237)
+.....++..+.. ....+|||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++..++. .+++.+|....
T Consensus 182 D~gt~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~ 257 (342)
T PRK09489 182 DVGSQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD 257 (342)
T ss_pred CHHHHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc
Confidence 3344444444432 3346899999999999999998876 679999999999999999999988864 46677776542
Q ss_pred HHHHhhcCCCCCceeEEEEeCCCc--------CcHHHHHHHHccCCCCeEEEE
Q 026547 135 LDQLLKDSENEGSFDYAFVDADKV--------NYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~ 179 (237)
. .++||+|+++.+-. ....+++.+.+.|+|||.+++
T Consensus 258 ~---------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 258 I---------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred c---------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 1 37899999875321 246788899999999998855
No 101
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=5.3e-12 Score=113.12 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=85.6
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
...++.+|||||||+|..+..++... +.+|+++|+++.+++.|+++.. +...+++++++|+.+.. ...+
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~-------~~~~ 331 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT-------YPDN 331 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC-------CCCC
Confidence 34567799999999999999998864 5699999999999999998765 44457999999986531 1246
Q ss_pred ceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 147 SFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 147 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
+||+|++... ..+...+++.+.+.|+|||.+++.+...
T Consensus 332 ~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 332 SFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 8999997543 3346789999999999999999987653
No 102
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.38 E-value=1.4e-13 Score=97.08 Aligned_cols=96 Identities=23% Similarity=0.306 Sum_probs=62.5
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe
Q 026547 75 IEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVD 154 (237)
Q Consensus 75 LeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id 154 (237)
||+|||+|..+.+++...+ ..+++++|+|+.+++.+++++...+... ......+..+..... ..++||+|+..
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD-----PPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc-----cccccceehhh
Confidence 7999999999999999886 8899999999999999999998877532 333443333332211 12599999876
Q ss_pred CC---CcCcHHHHHHHHccCCCCeEE
Q 026547 155 AD---KVNYWNYHERLMKLLKVGGIA 177 (237)
Q Consensus 155 ~~---~~~~~~~~~~~~~~L~~gG~l 177 (237)
.. ......+++.+.++|+|||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 43 245678899999999999986
No 103
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.38 E-value=1.4e-11 Score=96.33 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=96.2
Q ss_pred ccccHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc
Q 026547 52 MSTAPDAGQLMAMLLKL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE 130 (237)
Q Consensus 52 ~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 130 (237)
|..+...+.+...|... ..+.+|||+.||+|..++..+.+- ..+|+.||.++..+...+++++..+..++++++.+|
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d 100 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD 100 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence 45566777777777776 789999999999999999766542 359999999999999999999999998889999999
Q ss_pred chHHHHHHhhcCCCCCceeEEEEeCCCcC---cHHHHHHHH--ccCCCCeEEEEeC
Q 026547 131 ALSVLDQLLKDSENEGSFDYAFVDADKVN---YWNYHERLM--KLLKVGGIAVYDN 181 (237)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~---~~~~~~~~~--~~L~~gG~lv~~~ 181 (237)
+...+..+... ..+||+||+|.+-.. +.+.++.+. .+|+++|+|++..
T Consensus 101 ~~~~l~~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 101 AFKFLLKLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHHHHHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHHhhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 99888776433 589999999976433 256777776 7999999999964
No 104
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.38 E-value=1.1e-11 Score=101.92 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=79.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
+.+|||+|||+|..++.++...+ +.+|+++|+++.+++.|+++++..+ ++++++|..+.++... .++||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~-----~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL-----RGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc-----CCCEeE
Confidence 35899999999999999998776 6799999999999999999998765 4788999877554321 257999
Q ss_pred EEEeCCCcC-----------------------------cHHHHHHHHccCCCCeEEEEe
Q 026547 151 AFVDADKVN-----------------------------YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 151 i~id~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv~~ 180 (237)
|++|.+... +..+++.+.++|+|||.+++.
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 998853210 235666667999999999886
No 105
>PRK03612 spermidine synthase; Provisional
Probab=99.38 E-value=5e-12 Score=114.11 Aligned_cols=107 Identities=18% Similarity=0.301 Sum_probs=86.1
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHH--HHhcC---C-CCcEEEEeccchHHHHHHhhc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPV--IKKAG---V-DHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~~---~-~~~v~~~~~d~~~~~~~~~~~ 141 (237)
..++++||+||||+|..+.+++++ +...+|+++|+++++++.++++ +...+ . +++++++.+|+.+++...
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--- 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--- 370 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence 457889999999999999999875 4237999999999999999993 33321 2 368999999999887654
Q ss_pred CCCCCceeEEEEeCCCcC--------cHHHHHHHHccCCCCeEEEEeC
Q 026547 142 SENEGSFDYAFVDADKVN--------YWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 142 ~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.++||+|++|..... ..++++.+.+.|+|||+++++.
T Consensus 371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 479999999964322 2468999999999999999864
No 106
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.38 E-value=5.7e-12 Score=107.75 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=94.3
Q ss_pred cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
++.+..+..+..++...++..|||+|||+|..++.++.. +.+++|+|+++.+++.++.+++.+|+.+ ++++++|+.
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~ 240 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT 240 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence 345667777777777778889999999999998876653 5799999999999999999999999876 889999987
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEe
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+... ..++||+|++|.+- ..+..+++.+.+.|+|||.+++-
T Consensus 241 ~l~~-------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 241 KLPL-------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred cCCc-------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 6421 13789999998431 11467888889999999988874
No 107
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.37 E-value=5.3e-11 Score=105.47 Aligned_cols=123 Identities=18% Similarity=0.217 Sum_probs=98.7
Q ss_pred cHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 55 APDAGQLMAMLL--KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 55 ~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
......+...++ ...++.+|||+++|.|.-|.++|..+...+.|+++|+++..++..++++++.|+. ++.+...|+.
T Consensus 96 Qd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~ 174 (470)
T PRK11933 96 QEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGR 174 (470)
T ss_pred ECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchh
Confidence 334444444444 5567889999999999999999999876789999999999999999999999985 4888888987
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCCcCc-------------------------HHHHHHHHccCCCCeEEEEeCcCC
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDADKVNY-------------------------WNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
.....+ ...||.|++|++.+.. .++++.++++|+|||.||.+.+.+
T Consensus 175 ~~~~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 175 VFGAAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred hhhhhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 654333 3679999999765421 456777789999999999999875
No 108
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.37 E-value=9.2e-12 Score=101.24 Aligned_cols=102 Identities=19% Similarity=0.282 Sum_probs=82.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++.+. +++.++.+|+.+.. ...++|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~-------~~~~~f 99 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP-------LEDSSF 99 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC-------CCCCce
Confidence 3457999999999999999999876 6789999999999998888653 36889999886642 124789
Q ss_pred eEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 149 DYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 149 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
|+|++... ..+...+++.+.++|+|||.+++....
T Consensus 100 D~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 100 DLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred eEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 99998753 235678899999999999999987543
No 109
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=1.1e-11 Score=103.25 Aligned_cols=115 Identities=23% Similarity=0.389 Sum_probs=86.9
Q ss_pred HHHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 56 PDAGQLMAMLL---KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 56 ~~~~~~l~~l~---~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
+.+..++..+. ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++++ .+...+++++.+|..
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF 168 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence 34444444443 234667999999999999999999886 7899999999999999999987 333457999999885
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCC-----------------------------cCcHHHHHHHHccCCCCeEEEEe
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDADK-----------------------------VNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+..+ .++||+|+++.+. ..+..+++.+.++|+|||.+++.
T Consensus 169 ~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 169 EPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 4321 3689999985321 01245667777999999999984
No 110
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.36 E-value=1.3e-11 Score=102.56 Aligned_cols=111 Identities=24% Similarity=0.378 Sum_probs=85.3
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcCCC
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
....++++||++-|.+|..+++.+..- ..+|++||.|..+++.++++++-+|++ .+++++++|+.+++..+..
T Consensus 119 ~~~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~---- 192 (286)
T PF10672_consen 119 RKYAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK---- 192 (286)
T ss_dssp HHHCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH----
T ss_pred HHHcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc----
Confidence 344678999999999999999877642 348999999999999999999999986 6899999999998887643
Q ss_pred CCceeEEEEeCCC---------cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 145 EGSFDYAFVDADK---------VNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 145 ~~~~D~i~id~~~---------~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
.++||+|++|.+. ..+...+..+.++|+|||.|++..+
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3799999999652 2356778888899999999887654
No 111
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.36 E-value=4.6e-11 Score=99.16 Aligned_cols=106 Identities=22% Similarity=0.300 Sum_probs=91.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--C-CCcEEEEeccchHHHHHHhhcCCCC
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--V-DHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
.++++||-||-|.|..+.+++++.+ -.+++.||+++..++.+++++.... . ++|++++.+|+.+++... .
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~ 147 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------E 147 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------C
Confidence 3458999999999999999999876 6799999999999999999997653 2 489999999999999865 3
Q ss_pred CceeEEEEeCCCc-C------cHHHHHHHHccCCCCeEEEEeC
Q 026547 146 GSFDYAFVDADKV-N------YWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 146 ~~~D~i~id~~~~-~------~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.+||+|++|.... . ..+|++.|.+.|+++|+++..+
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 5899999996432 1 4789999999999999999973
No 112
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.35 E-value=1.4e-12 Score=104.72 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=79.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-----cEEEEeccchHHHHHHhhcCCCC
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-----KINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
+++|||+|||.|..+..||+. ++.|+|||+++++++.|++.....+..+ ++++.+.++.+. .
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~ 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------T 156 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------c
Confidence 367999999999999999985 6799999999999999999944333322 355666665444 3
Q ss_pred CceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 146 GSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 146 ~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
++||.|++... ..+..++++.+.++|+|||.+++.++.
T Consensus 157 ~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 157 GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 67999998643 334678999999999999999998875
No 113
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.35 E-value=4.3e-11 Score=97.36 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
+...+++.......++.+|||||||+|..+..+++. ..+++++|+++.+++.+++++...+. .++++.++..+..
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 108 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA 108 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh
Confidence 334445555555557789999999999999988874 46899999999999999998877665 4788888876654
Q ss_pred HHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 136 DQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
... .++||+|++... ..+...+++.+.+.|+|||.+++...
T Consensus 109 ~~~------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 109 AEH------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhc------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 321 478999987532 33456788999999999999998753
No 114
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.35 E-value=1.2e-11 Score=107.48 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=81.0
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
...++.+|||||||+|..+.++++.. +.+|+++|+++++++.|+++.+ +. .+++..+|..+. .+
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~ 227 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NG 227 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CC
Confidence 34567899999999999999999864 4699999999999999999874 32 378888886543 37
Q ss_pred ceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 147 SFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 147 ~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+||.|+.... ..++..+++.+.++|+|||.+++..+.
T Consensus 228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 8999975432 234578999999999999999998654
No 115
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.34 E-value=2.2e-11 Score=105.53 Aligned_cols=118 Identities=18% Similarity=0.289 Sum_probs=88.2
Q ss_pred ccHHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 54 TAPDAGQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 54 ~~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
..+.+..++..+.. ..++.+|||+|||+|..++.++...+ +.+|+++|+|+.+++.|+++++..+. +++++++|..
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~ 310 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWF 310 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchh
Confidence 34566666666554 34557999999999999999988766 78999999999999999999988774 6999999986
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCCc------------------------C----cHHHHHHHHccCCCCeEEEEe
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDADKV------------------------N----YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~~~------------------------~----~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+.... ..++||+|+++.+.- + +..+++.+.+.|+|||.+++.
T Consensus 311 e~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 311 DTDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred ccccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 53210 135799999874310 0 224455555799999998874
No 116
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.34 E-value=2.9e-11 Score=102.78 Aligned_cols=102 Identities=11% Similarity=0.041 Sum_probs=80.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++.+|||+|||+|..++.++.. +.+|+++|+++.+++.|+++++..++ ++++++++|+.++.... .++|
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~ 241 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVP 241 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCC
Confidence 35789999999999999999983 56999999999999999999999998 56999999998875432 3579
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
|+|++|.+.......+......++|++++.++
T Consensus 242 D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 242 DLVLVNPPRRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred eEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence 99999977655433333333456787777764
No 117
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.34 E-value=2.1e-11 Score=98.12 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=85.6
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
...++.+|||+|||+|..+..+++..+...+++++|+++.+++.+++++. ...+++++.+|+.+... ..+
T Consensus 36 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~-------~~~ 105 (223)
T TIGR01934 36 GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF-------EDN 105 (223)
T ss_pred ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC-------CCC
Confidence 34467899999999999999999988744799999999999999998875 33568999999876421 146
Q ss_pred ceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 147 SFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 147 ~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+||+|++.. .......+++.+.+.|+|||.+++.+..
T Consensus 106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred cEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 899998753 3345678899999999999999886543
No 118
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.34 E-value=9e-12 Score=99.89 Aligned_cols=102 Identities=13% Similarity=0.116 Sum_probs=75.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC--------------CCcEEEEeccchHHH
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV--------------DHKINFIESEALSVL 135 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~ 135 (237)
++.+||++|||.|..+++||.. +-.|++||+++.+++.+.+ +.++ ..+|+++++|..+..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 5579999999999999999973 6799999999999997533 2222 236899999997763
Q ss_pred HHHhhcCCCCCceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 136 DQLLKDSENEGSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
... .++||.|+-.. .......+++.+.++|+|||++++....
T Consensus 108 ~~~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 108 AAD------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ccc------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 321 25788886432 2233456899999999999986665443
No 119
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.4e-11 Score=101.75 Aligned_cols=114 Identities=20% Similarity=0.223 Sum_probs=89.6
Q ss_pred ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
++....-++..+.....+ +|||+|||.|+.++.+++..| ..+++.+|.+...++.+|++++.++..+. .++..|..+
T Consensus 143 lD~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~ 219 (300)
T COG2813 143 LDKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYE 219 (300)
T ss_pred cChHHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccc
Confidence 445555555555544444 999999999999999999988 89999999999999999999999887653 677777655
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCCcC--------cHHHHHHHHccCCCCeEEEE
Q 026547 134 VLDQLLKDSENEGSFDYAFVDADKVN--------YWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~ 179 (237)
-. .++||+|+++.+-+. ..++++...+.|++||-|-+
T Consensus 220 ~v---------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 220 PV---------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred cc---------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 43 369999998754222 24788888899999997643
No 120
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.33 E-value=8.1e-12 Score=96.90 Aligned_cols=115 Identities=17% Similarity=0.242 Sum_probs=86.8
Q ss_pred HHHHHHH---HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE-EEeccchH
Q 026547 58 AGQLMAM---LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN-FIESEALS 133 (237)
Q Consensus 58 ~~~~l~~---l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~ 133 (237)
..++... ++.......|||+|||+|.+-.++-. . +..+|+++|+++.|-+.+.+.+++... .++. |++++.++
T Consensus 61 krelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~-~-p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~ 137 (252)
T KOG4300|consen 61 KRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPW-K-PINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGEN 137 (252)
T ss_pred HHHHHhhhHHHhcccCccceEEecccCCCCcccccC-C-CCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhc
Confidence 4444444 33334445789999999998665432 1 478999999999999999999988754 3465 88888866
Q ss_pred HHHHHhhcCCCCCceeEEEE---eCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 134 VLDQLLKDSENEGSFDYAFV---DADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D~i~i---d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
. ++++ +++||.|+. -+...+..+.+.++.++|+|||.+++=.
T Consensus 138 l-~~l~-----d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 138 L-PQLA-----DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred C-cccc-----cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 5 3332 589999964 4677888899999999999999998743
No 121
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.32 E-value=2.3e-11 Score=97.31 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=88.7
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCchHHHHHHHHHHhcCCCCc--EEEEeccchHHHHHHh
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQIMAIDVNRETYEIGLPVIKKAGVDHK--INFIESEALSVLDQLL 139 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~~~ 139 (237)
...+..++||++||+|..+..+.++... +.+|+.+|++|+++..++++..+.++.+. +.++.+|+.+.
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L----- 171 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL----- 171 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-----
Confidence 3445679999999999999999998863 28999999999999999999888777644 89999999776
Q ss_pred hcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEe
Q 026547 140 KDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
++++.+||...+... ..+....++++.|.|||||.+.+-
T Consensus 172 --pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 172 --PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred --CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 245689999877654 445678899999999999988763
No 122
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.32 E-value=3.3e-11 Score=95.31 Aligned_cols=102 Identities=25% Similarity=0.384 Sum_probs=85.3
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF 152 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 152 (237)
.+||||||.|...+.+|...| +..++|+|+....+..+.+.+...++. ++.++++|+...+..+.+ ++++|.|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~----~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFP----PGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHST----TTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhccc----CCchheEE
Confidence 899999999999999999988 899999999999999999999999885 599999999998888743 48999999
Q ss_pred EeCCCc-----------CcHHHHHHHHccCCCCeEEEEe
Q 026547 153 VDADKV-----------NYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 153 id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+.-+-+ -.+++++.+.+.|+|||.|.+.
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 874321 1478999999999999998763
No 123
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.32 E-value=5.1e-11 Score=95.92 Aligned_cols=104 Identities=24% Similarity=0.385 Sum_probs=90.1
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
...+||||||.|.....+|...| +..++|||+....+..+.+.+.+.++. ++.++++|+.+.+..+.+ .++.|-
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~sl~~ 122 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DGSLDK 122 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CCCeeE
Confidence 45899999999999999999988 789999999999999999999999986 699999999999988743 369999
Q ss_pred EEEeCCC-----cC------cHHHHHHHHccCCCCeEEEEe
Q 026547 151 AFVDADK-----VN------YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 151 i~id~~~-----~~------~~~~~~~~~~~L~~gG~lv~~ 180 (237)
|++.-+- .+ .+.+++.+.+.|++||+|.+.
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 9886321 11 468999999999999999874
No 124
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.32 E-value=2.7e-11 Score=103.16 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=79.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
++.+|||+|||+|..+..+++..+ ..+|+++|+++++++.++++... .+++++.+|+.+.- ...++||
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp-------~~~~sFD 180 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLP-------FPTDYAD 180 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCC-------CCCCcee
Confidence 467999999999999999988775 57999999999999999987542 35788999986641 1247899
Q ss_pred EEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 150 YAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 150 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
+|++... ..+....++++.+.|+|||.+++..
T Consensus 181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9987643 2345678999999999999987743
No 125
>PTZ00146 fibrillarin; Provisional
Probab=99.32 E-value=2.6e-11 Score=100.50 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=78.1
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
+.++.+|||+|||+|+.+.+++..+.+.++|+++|+++.+.+...+..+.. ++|.++.+|+..... +. ...++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~-y~---~~~~~ 202 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK-YR---MLVPM 202 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh-hh---cccCC
Confidence 456779999999999999999999876789999999987665444443321 458899999864211 10 01368
Q ss_pred eeEEEEeCCCcCcH-HHHHHHHccCCCCeEEEEe
Q 026547 148 FDYAFVDADKVNYW-NYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 148 ~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~ 180 (237)
+|+||+|....+.. .++.++.+.|+|||.+++.
T Consensus 203 vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 99999998644433 4456788899999999983
No 126
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.31 E-value=2.2e-11 Score=99.77 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=87.1
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC---CCcEEEEeccchHHHHHHhhcCCC
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV---DHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
..++++||-||-|.|..+..++++-+ ..+|+.||+++..++.+++++..... ++|++++.+|+..++...
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------ 146 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------ 146 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------
Confidence 44789999999999999999987643 57999999999999999999876432 478999999999998865
Q ss_pred CC-ceeEEEEeCCCc-------CcHHHHHHHHccCCCCeEEEEeC
Q 026547 145 EG-SFDYAFVDADKV-------NYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 145 ~~-~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.+ +||+|++|...+ -..++++.+.+.|+|||++++..
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 35 899999996532 14689999999999999999865
No 127
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.31 E-value=4.1e-11 Score=96.63 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=79.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
..++.+|||+|||+|..+.+++.. +.+|+|+|+++++++.|++++...+..+++++.++|+.+. .++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~ 119 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGE 119 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCC
Confidence 446789999999999999999874 5699999999999999999998777666799999998664 268
Q ss_pred eeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 148 FDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 148 ~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
||+|+.... .......++.+.+.+++++++.+.+
T Consensus 120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~ 158 (219)
T TIGR02021 120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP 158 (219)
T ss_pred cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 999976422 1224466788888888877777643
No 128
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.31 E-value=4.9e-11 Score=100.71 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=79.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
++.+|||+|||+|..+..+++++++..+++++|+|+++++.+++++......-++.++++|..+.++..... ......
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCeE
Confidence 557999999999999999999876457999999999999999998876432235778899987654322100 001233
Q ss_pred EEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 150 YAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 150 ~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
+++++.. ......+++.+.+.|+|||.+++.-
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4444332 2224568999999999999998743
No 129
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.5e-11 Score=101.23 Aligned_cols=117 Identities=20% Similarity=0.378 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHH-hhcCCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 55 APDAGQLMAMLL-KLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 55 ~~~~~~~l~~l~-~~~~~~-~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
.+.+..++..+. ...... +|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|.+.+|+ .++.++.+|..
T Consensus 93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf 170 (280)
T COG2890 93 RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLF 170 (280)
T ss_pred CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecc
Confidence 456666666533 222222 799999999999999999887 78999999999999999999999998 56677777655
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC---Cc-------------------------CcHHHHHHHHccCCCCeEEEEeCc
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDAD---KV-------------------------NYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~---~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+.+ .++||+|+.+.+ .. -+..++..+...|++||++++.--
T Consensus 171 ~~~---------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 171 EPL---------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred ccc---------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 443 369999987632 11 124566667789999999998643
No 130
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.29 E-value=8.6e-11 Score=104.07 Aligned_cols=105 Identities=16% Similarity=0.120 Sum_probs=84.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
..++.+|||+|||+|..++.+++.. .+|+++|+++.+++.|+++++..++. +++++.+|+.+.++.+... ..+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~---~~~ 362 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWA---GQI 362 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhc---CCC
Confidence 3456799999999999999999853 48999999999999999999988874 6999999998876654211 357
Q ss_pred eeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEEe
Q 026547 148 FDYAFVDADKVN-YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 148 ~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 180 (237)
||+|++|.+... ...+++.+. .+++++++.++
T Consensus 363 ~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 363 PDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred CCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence 999999987655 567777765 48898887764
No 131
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=4.2e-11 Score=107.37 Aligned_cols=110 Identities=25% Similarity=0.290 Sum_probs=82.1
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547 64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
.++...++++|||||||+|..+..+++. ..+|+++|+++.+++.+++.. +..++++++++|+.+.... .
T Consensus 31 ~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~-----~ 99 (475)
T PLN02336 31 SLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLN-----I 99 (475)
T ss_pred hhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccC-----C
Confidence 3334445679999999999999999986 358999999999998776532 3335689999998542111 1
Q ss_pred CCCceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 144 NEGSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
..++||+|++...... ...+++.+.+.|+|||.+++.+..+
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 2478999998653222 4578899999999999999977654
No 132
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.29 E-value=8.1e-11 Score=104.53 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=84.6
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
..++.+|||+|||+|..++.+++.. .+|+++|+++++++.|+++++..++. +++++++|+.+.+.... ....+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~---~~~~~ 367 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQP---WALGG 367 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhh---hhcCC
Confidence 3456799999999999999999863 59999999999999999999988875 59999999987654321 01357
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
||+|++|.+.....+.++.+.+ +++++++.++
T Consensus 368 fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 368 FDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred CCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 9999999877666777776655 6888887775
No 133
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.29 E-value=4.1e-11 Score=91.43 Aligned_cols=107 Identities=24% Similarity=0.285 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547 56 PDAGQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134 (237)
Q Consensus 56 ~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (237)
....+++..+.. ..++.+|||+|||.|..+..++.. +.+++++|+++.+++. .++.....+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~ 72 (161)
T PF13489_consen 7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDP 72 (161)
T ss_dssp HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTH
T ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhh
Confidence 445566666665 567889999999999999999764 4599999999999877 1123333222222
Q ss_pred HHHHhhcCCCCCceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 135 LDQLLKDSENEGSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
.. ..++||+|++...- .+...+++.+.++|+|||.+++....
T Consensus 73 ~~-------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 73 PF-------PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp HC-------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred hc-------cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 11 15899999987643 34678999999999999999998775
No 134
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.28 E-value=5.7e-11 Score=95.13 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=73.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCC
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENE 145 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~ 145 (237)
..++.+|||+|||+|.++..+++..+..++|++||+++ + .+. +.++++++|+.+. ++.+... ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLER-VGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHH-hCC
Confidence 45677999999999999999999876568999999988 1 122 3489999998763 2222111 124
Q ss_pred CceeEEEEeCCCcC--------------cHHHHHHHHccCCCCeEEEEeC
Q 026547 146 GSFDYAFVDADKVN--------------YWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 146 ~~~D~i~id~~~~~--------------~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
++||+|+.+..... ....++.+.++|+|||.+++..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 78999998752211 1346788889999999999963
No 135
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.28 E-value=4.2e-11 Score=96.39 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=80.1
Q ss_pred ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC-------------
Q 026547 54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV------------- 120 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------- 120 (237)
..+...+.+..+ ...++.+||++|||.|..+++||.. +.+|++||+++.+++.+.+ +.++
T Consensus 22 p~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~ 94 (218)
T PRK13255 22 VNPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHY 94 (218)
T ss_pred CCHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCcccccccccccc
Confidence 344444443322 2234579999999999999999973 7799999999999987642 2222
Q ss_pred -CCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 121 -DHKINFIESEALSVLDQLLKDSENEGSFDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 121 -~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
..+|+++++|+.+..+.. .+.||+|+-. ........+++.+.++|+|||++++
T Consensus 95 ~~~~v~~~~~D~~~l~~~~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 95 QAGEITIYCGDFFALTAAD------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCceEEEECcccCCCccc------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 246899999998764321 3689999732 2333456889999999999986444
No 136
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.26 E-value=1.1e-10 Score=96.72 Aligned_cols=106 Identities=23% Similarity=0.307 Sum_probs=76.2
Q ss_pred CCCEEEEEcccccHH----HHHHHhhCCC----CCEEEEEeCCchHHHHHHHHHH------hc-----------------
Q 026547 70 NAKKTIEIGVFTGYS----LLLTALTIPE----DGQIMAIDVNRETYEIGLPVIK------KA----------------- 118 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~----~~~la~~~~~----~~~v~~vD~~~~~~~~a~~~~~------~~----------------- 118 (237)
++.+|+++|||+|.. ++.+++..+. +.+|+|+|+|+.+++.|++..- ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 456999999999973 4455555442 4689999999999999987531 00
Q ss_pred ---CCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 119 ---GVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 119 ---~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
.+..+|+|.++|..+... ..++||+|++...- ......++.+.+.|+|||.+++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 012468899999876422 14789999985321 2334689999999999999998543
No 137
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.25 E-value=1.5e-10 Score=93.86 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=74.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++.+|||+|||+|..+..++.. +.+|+++|+++.+++.|++++...+..+++++..+|... . .++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~------~~~f 128 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----L------LGRF 128 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----c------cCCc
Confidence 45679999999999999999875 457999999999999999999888876789999998321 1 3789
Q ss_pred eEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEE
Q 026547 149 DYAFVDADK-----VNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 149 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
|+|++.... ......++.+.+.++.++++.+
T Consensus 129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 999875432 2234566666666655554443
No 138
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.25 E-value=1.8e-10 Score=93.11 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=82.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...+.. ++++..+|+.+..... .++||
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D 114 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG------AKSFD 114 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC------CCCcc
Confidence 4779999999999999988874 357999999999999999998876653 5888888887654321 37899
Q ss_pred EEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 150 YAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 150 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+|++.. ...+...+++.+.+.|++||.+++...
T Consensus 115 ~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 115 VVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 998763 234567889999999999999988654
No 139
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.24 E-value=2.8e-10 Score=98.90 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=90.6
Q ss_pred CccccHHHHHHHHHH-Hh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE
Q 026547 51 MMSTAPDAGQLMAML-LK---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF 126 (237)
Q Consensus 51 ~~~~~~~~~~~l~~l-~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 126 (237)
|..+.....+.+... .. ..++.+|||+|||+|..++.++.. ..+|+++|+++.+++.|+++++..++. ++++
T Consensus 210 F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~ 285 (374)
T TIGR02085 210 FFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLSF 285 (374)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEE
Confidence 345555555555433 22 235679999999999999999863 568999999999999999999999885 6999
Q ss_pred EeccchHHHHHHhhcCCCCCceeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEEe
Q 026547 127 IESEALSVLDQLLKDSENEGSFDYAFVDADKVN-YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+.+|+.+++... ..+||+|++|.+... ....++.+. .++|++++.++
T Consensus 286 ~~~d~~~~~~~~------~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 286 AALDSAKFATAQ------MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred EECCHHHHHHhc------CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 999998876532 256999999987554 345566664 57898888775
No 140
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=4.1e-10 Score=96.99 Aligned_cols=130 Identities=21% Similarity=0.279 Sum_probs=102.3
Q ss_pred CCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe
Q 026547 50 AMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE 128 (237)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 128 (237)
+...++.....+...+....++.+|||+.++.|.=|.+++..+.. +..|+++|.++..+...++++++.|..+ +.+.+
T Consensus 136 G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~ 214 (355)
T COG0144 136 GLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVN 214 (355)
T ss_pred eEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEe
Confidence 334455666667777778888899999999999999999999874 3456999999999999999999999976 77888
Q ss_pred ccchHHHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcC
Q 026547 129 SEALSVLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 129 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
.|+........ ..++||.|++|++.+. -.++++..+++|+|||.|+.+.+.
T Consensus 215 ~d~~~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 215 KDARRLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred ccccccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 87755433321 1236999999965422 135777888999999999999987
Q ss_pred C
Q 026547 184 W 184 (237)
Q Consensus 184 ~ 184 (237)
.
T Consensus 291 ~ 291 (355)
T COG0144 291 L 291 (355)
T ss_pred C
Confidence 5
No 141
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=3.2e-11 Score=93.46 Aligned_cols=114 Identities=11% Similarity=-0.048 Sum_probs=85.7
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++.. .++++++++|+.+.... .
T Consensus 9 ~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~ 75 (169)
T smart00650 9 ANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------K 75 (169)
T ss_pred cCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------c
Confidence 34456679999999999999999985 46999999999999999998854 24799999999876321 2
Q ss_pred CceeEEEEeCCCcCcHHHHHHHHc--cCCCCeEEEEeCcCCCCcccCCC
Q 026547 146 GSFDYAFVDADKVNYWNYHERLMK--LLKVGGIAVYDNTLWGGTVAMSE 192 (237)
Q Consensus 146 ~~~D~i~id~~~~~~~~~~~~~~~--~L~~gG~lv~~~~~~~g~~~~~~ 192 (237)
.+||.|+.+..-....+.+..+.+ .+.++|++++..-........|.
T Consensus 76 ~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~ 124 (169)
T smart00650 76 LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPG 124 (169)
T ss_pred cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCC
Confidence 469999988765555566666664 34588999997765544444443
No 142
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.23 E-value=1.1e-10 Score=96.33 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=79.9
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
.-..+++|||||||.||.+..|+..-+ ..|+|+|.++...-+.+..-+-.|....+.++.. ..+.++. .+
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl-gvE~Lp~-------~~ 181 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL-GVEDLPN-------LG 181 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCc-chhhccc-------cC
Confidence 345789999999999999999987633 4799999999877654443333454433444432 2333332 37
Q ss_pred ceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 147 SFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 147 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
.||.||+-+. ..+....+..+...|++||.+|++.....|
T Consensus 182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred CcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 8999998764 455678899999999999999999887655
No 143
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.23 E-value=4.1e-10 Score=87.24 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=97.8
Q ss_pred ccccHHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc
Q 026547 52 MSTAPDAGQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE 130 (237)
Q Consensus 52 ~~~~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 130 (237)
|..++..+.+...+.. ...+.++||+-+|+|..++..+.+. ..+++.||.+.......++|++..+...+++++..|
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~d 101 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRND 101 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeec
Confidence 5566677777777777 4888999999999999999876642 358999999999999999999999988889999999
Q ss_pred chHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHH----ccCCCCeEEEEeCc
Q 026547 131 ALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLM----KLLKVGGIAVYDNT 182 (237)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~----~~L~~gG~lv~~~~ 182 (237)
+...++.+.. ..+||+||+|.+-.. ......... .+|+|+|++++..-
T Consensus 102 a~~~L~~~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 102 ALRALKQLGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHHHhcCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 9987776632 246999999976442 211222222 67999999999643
No 144
>PRK06202 hypothetical protein; Provisional
Probab=99.22 E-value=6.4e-11 Score=96.37 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547 58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134 (237)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (237)
..+.+.......++.+|||+|||+|..+..+++..+ .+.+|+++|+++++++.|++.....+ +++...++.+.
T Consensus 48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l 123 (232)
T PRK06202 48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDEL 123 (232)
T ss_pred HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccc
Confidence 334444444445678999999999999988876532 24599999999999999988764333 45555544332
Q ss_pred HHHHhhcCCCCCceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 135 LDQLLKDSENEGSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
+. ..++||+|++...-.+ ...+++++.++++ |.+++.+...
T Consensus 124 -~~------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 124 -VA------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred -cc------cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 11 1479999998653222 2458888888887 5666666543
No 145
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.22 E-value=4e-11 Score=91.32 Aligned_cols=107 Identities=21% Similarity=0.317 Sum_probs=84.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
++.+|||+|||.|.....|++.-- .++++|+|.++.+++.|+...++.+.++.|+|.+.|+.+. . +-.++||
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~-----~~~~qfd 138 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--D-----FLSGQFD 138 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--c-----cccccee
Confidence 345999999999999888886432 3569999999999999999999999998899999998764 1 1247888
Q ss_pred EEEE----eC-------CCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 150 YAFV----DA-------DKVNYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 150 ~i~i----d~-------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
+|.- |+ ......-|+..+.++|+|||++++..+.|
T Consensus 139 lvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 139 LVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred EEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 8851 21 12223567888999999999999988887
No 146
>PHA03411 putative methyltransferase; Provisional
Probab=99.21 E-value=1.2e-10 Score=95.56 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=74.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
.....+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++++ ++++++++|+.+... ..+
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~k 126 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEK 126 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCC
Confidence 33457999999999999998887654 579999999999999998864 358899999987632 368
Q ss_pred eeEEEEeCCCcC-----------------------cHHHHHHHHccCCCCeEEEEe
Q 026547 148 FDYAFVDADKVN-----------------------YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 148 ~D~i~id~~~~~-----------------------~~~~~~~~~~~L~~gG~lv~~ 180 (237)
||+|+.+.+-.. ..+++.....+|+|+|.+.+.
T Consensus 127 FDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 127 FDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 999998643110 134556666889999976654
No 147
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.21 E-value=1.9e-10 Score=90.56 Aligned_cols=107 Identities=15% Similarity=0.213 Sum_probs=75.4
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHH
Q 026547 61 LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQL 138 (237)
Q Consensus 61 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~ 138 (237)
+...+....++.+|||+|||+|..+..+++.....++|+++|+++.+ +. ++++++++|+.+. ++.+
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHH
Confidence 33444455678899999999999999998877546799999999864 11 3478888887542 1111
Q ss_pred hhcCCCCCceeEEEEeCCCc-------C-------cHHHHHHHHccCCCCeEEEEe
Q 026547 139 LKDSENEGSFDYAFVDADKV-------N-------YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 139 ~~~~~~~~~~D~i~id~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~ 180 (237)
... ...++||+|+++.... + ....++.+.+.|+|||.+++.
T Consensus 91 ~~~-~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 91 RER-VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHH-hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 110 1236899999875311 1 146788889999999999985
No 148
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=1.5e-10 Score=93.46 Aligned_cols=123 Identities=17% Similarity=0.280 Sum_probs=93.7
Q ss_pred cccHHHHHHHHHHHhh------cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE
Q 026547 53 STAPDAGQLMAMLLKL------VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF 126 (237)
Q Consensus 53 ~~~~~~~~~l~~l~~~------~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 126 (237)
...+++++++...... .++..+||+|||+|..++.++..++ .++|++||.++.++..|.+|..++++.+++.+
T Consensus 125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 125 IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred ecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence 3456777777765542 3456899999999999999999999 89999999999999999999999999999998
Q ss_pred Eec----cchHHHHHHhhcCCCCCceeEEEEeCC--------------------------Cc---CcHHHHHHHHccCCC
Q 026547 127 IES----EALSVLDQLLKDSENEGSFDYAFVDAD--------------------------KV---NYWNYHERLMKLLKV 173 (237)
Q Consensus 127 ~~~----d~~~~~~~~~~~~~~~~~~D~i~id~~--------------------------~~---~~~~~~~~~~~~L~~ 173 (237)
++- |..+..+.+ .+++|+++.+.+ .. .+..++.-..+.|+|
T Consensus 204 ~~~~me~d~~~~~~l~------~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~ 277 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLL------EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP 277 (328)
T ss_pred Eecccccccccccccc------cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc
Confidence 854 443333222 589999986421 11 123455566699999
Q ss_pred CeEEEEeCc
Q 026547 174 GGIAVYDNT 182 (237)
Q Consensus 174 gG~lv~~~~ 182 (237)
||.+.+.-.
T Consensus 278 gg~~~le~~ 286 (328)
T KOG2904|consen 278 GGFEQLELV 286 (328)
T ss_pred CCeEEEEec
Confidence 999998754
No 149
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.21 E-value=1.5e-10 Score=91.47 Aligned_cols=114 Identities=21% Similarity=0.254 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
....+..+......++..|+|+.||.|..++.+|+..+ ..+|+++|++|..++..+++++.+++.+++.++++|+.+++
T Consensus 87 rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 87 RLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL 165 (200)
T ss_dssp GGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred ccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence 33334333333356788999999999999999998644 67999999999999999999999999999999999999987
Q ss_pred HHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
+ ...+|-|+++.+... .+|++.+.+++++||++.+
T Consensus 166 ~--------~~~~drvim~lp~~~-~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 166 P--------EGKFDRVIMNLPESS-LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp ---------TT-EEEEEE--TSSG-GGGHHHHHHHEEEEEEEEE
T ss_pred C--------ccccCEEEECChHHH-HHHHHHHHHHhcCCcEEEC
Confidence 6 389999999876544 4788999999999998853
No 150
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.20 E-value=3e-10 Score=85.42 Aligned_cols=120 Identities=17% Similarity=0.115 Sum_probs=98.5
Q ss_pred ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
.++++..++.|...+...++..|||+|.|+|..|..++++.-+...++++|.++++....++.+ +.++++.||+
T Consensus 30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda 103 (194)
T COG3963 30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDA 103 (194)
T ss_pred cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccch
Confidence 5678889999999888999999999999999999998887766889999999999998888765 3477999999
Q ss_pred hHHHHHHhhcCCCCCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEE
Q 026547 132 LSVLDQLLKDSENEGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~ 179 (237)
.+.-..+.+. ....||.|+...... ...++++.+...|+.||.++-
T Consensus 104 ~~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 104 FDLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hhHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 8876555443 346799998765433 345789999999999998875
No 151
>PRK05785 hypothetical protein; Provisional
Probab=99.19 E-value=2.8e-10 Score=92.22 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=72.7
Q ss_pred HHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547 61 LMAMLLKL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL 139 (237)
Q Consensus 61 ~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 139 (237)
++..+... .++.+|||+|||+|..+..+++.. +.+|+|+|++++|++.|++. ..++++|+.+. +
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p--- 105 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P--- 105 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-C---
Confidence 34444332 347799999999999999998764 46999999999999998863 13467777653 1
Q ss_pred hcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCe
Q 026547 140 KDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGG 175 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG 175 (237)
+.+++||+|++... ..+....++++.+.|+|..
T Consensus 106 ---~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 ---FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 23689999987643 3456788999999999953
No 152
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.19 E-value=3.2e-10 Score=79.04 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=77.8
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF 152 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 152 (237)
+++|+|||.|..+..++. . ...+++++|+++...+.+++.....+ ..++.++.+|..+.... ...+||+|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPE------ADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccc------cCCceEEEE
Confidence 489999999999998887 2 36799999999999998886443333 35689999998876541 147899999
Q ss_pred EeCCCc----CcHHHHHHHHccCCCCeEEEEe
Q 026547 153 VDADKV----NYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 153 id~~~~----~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
++.... ....+++.+.+.+++||.+++.
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 876533 3567888888999999999875
No 153
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.12 E-value=2.4e-09 Score=92.64 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=87.9
Q ss_pred ccccHHHHHHHHH-HHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe
Q 026547 52 MSTAPDAGQLMAM-LLKLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE 128 (237)
Q Consensus 52 ~~~~~~~~~~l~~-l~~~~~--~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 128 (237)
..+.+...+.|.. +..... +.+|||++||+|..++.+++.. .+|+++|.++.+++.++++++..++. +++++.
T Consensus 185 ~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~ 260 (362)
T PRK05031 185 TQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQIIR 260 (362)
T ss_pred eccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEE
Confidence 3445554444443 333322 3579999999999999999864 48999999999999999999998875 699999
Q ss_pred ccchHHHHHHhhcCC---------CCCceeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEEe
Q 026547 129 SEALSVLDQLLKDSE---------NEGSFDYAFVDADKVN-YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 129 ~d~~~~~~~~~~~~~---------~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+|+.++++.+..... ...+||+||+|.+... ....++.+.+ +++++.++
T Consensus 261 ~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 261 MSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred CCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence 999998876532100 0125899999987544 3555566654 67777764
No 154
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.12 E-value=1.7e-09 Score=93.96 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=84.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
..+|||++||+|..++.++...+ ..+|+++|+++.+++.++++++.+++. .++++++|+.+.+.. .++||+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~ 128 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDV 128 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCE
Confidence 35899999999999999988654 458999999999999999999998875 477999999877643 257999
Q ss_pred EEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 151 AFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 151 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
|++|.. .....+++...+.+++||++.+.
T Consensus 129 V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 129 VDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 999975 34467888877889999999996
No 155
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.12 E-value=3.3e-10 Score=89.49 Aligned_cols=137 Identities=13% Similarity=0.138 Sum_probs=87.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
+..++||+|+|.|..|..++..+ -.+|..||+.+.+++.|++++...+ ....++++...+++.|. ..+||
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YD 124 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYD 124 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEe
Confidence 35699999999999999876543 4599999999999999998775421 22356777777777653 37999
Q ss_pred EEEEeCCC-----cCcHHHHHHHHccCCCCeEEEE-eCcCCCCc-ccCCCCCCCccccchHHHHHHHHHHhhcCCCceEE
Q 026547 150 YAFVDADK-----VNYWNYHERLMKLLKVGGIAVY-DNTLWGGT-VAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLS 222 (237)
Q Consensus 150 ~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~-~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (237)
+||+-... .+..+||++|...|+|+|+||+ +|+...|. +.++.+. ..++....|.+.+ ...++..+
T Consensus 125 lIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~Ds------SvTRs~~~~~~lF-~~AGl~~v 197 (218)
T PF05891_consen 125 LIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDS------SVTRSDEHFRELF-KQAGLRLV 197 (218)
T ss_dssp EEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTT------EEEEEHHHHHHHH-HHCT-EEE
T ss_pred EEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccC------eeecCHHHHHHHH-HHcCCEEE
Confidence 99987543 3357899999999999999999 66665554 4444332 3344444444433 33455544
Q ss_pred e
Q 026547 223 H 223 (237)
Q Consensus 223 ~ 223 (237)
-
T Consensus 198 ~ 198 (218)
T PF05891_consen 198 K 198 (218)
T ss_dssp E
T ss_pred E
Confidence 3
No 156
>PRK00536 speE spermidine synthase; Provisional
Probab=99.11 E-value=1.5e-09 Score=89.15 Aligned_cols=101 Identities=8% Similarity=0.038 Sum_probs=80.8
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--C-CCcEEEEeccchHHHHHHhhcC
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--V-DHKINFIESEALSVLDQLLKDS 142 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~ 142 (237)
....+|++||-||.|.|..+..++++ + .+|+.||+++++++.+++++.... + ++|++++.. . ...
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~~---- 135 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LDL---- 135 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hhc----
Confidence 34567899999999999999999998 3 399999999999999999776432 2 478888761 1 111
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
..++||+|++|.. ..+++++.+.+.|+|||+++...
T Consensus 136 -~~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 136 -DIKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred -cCCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence 1378999999964 34789999999999999999964
No 157
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.10 E-value=9.8e-10 Score=86.49 Aligned_cols=164 Identities=15% Similarity=0.173 Sum_probs=89.2
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHh---hCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTAL---TIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~---~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
.|.....+..+.-..+|+.|+|+|+..|++++++|. .+...++|++||++.... .++.++..++.++|++++||+
T Consensus 17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-S
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCceEEEECCC
Confidence 456666677788888999999999999999998875 343478999999965432 233344456668999999998
Q ss_pred hHHHHHHhhcC-CCCCceeEEEEeCC--CcCcHHHHHHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHH
Q 026547 132 LSVLDQLLKDS-ENEGSFDYAFVDAD--KVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLD 208 (237)
Q Consensus 132 ~~~~~~~~~~~-~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 208 (237)
.+.-.-..... .......+|+.|+. +.+...-|+...+++++|+++|+.|..+.......... +.. ..-..-...
T Consensus 95 ~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~-~~w-~~g~~p~~a 172 (206)
T PF04989_consen 95 IDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPD-RPW-GPGNNPKTA 172 (206)
T ss_dssp SSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS---------------HHH
T ss_pred CCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccc-cch-hhhhHHHHH
Confidence 65322111000 01245668888876 35567788888999999999999888643322211101 111 001112566
Q ss_pred HHHHhhcCCCceEE
Q 026547 209 LNRSLADDPRIQLS 222 (237)
Q Consensus 209 ~~~~l~~~~~~~~~ 222 (237)
+.+++..+++|+.-
T Consensus 173 v~~fL~~~~~f~iD 186 (206)
T PF04989_consen 173 VKEFLAEHPDFEID 186 (206)
T ss_dssp HHHHHHTTTTEEEE
T ss_pred HHHHHHHCCCcEec
Confidence 67778888886644
No 158
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=4.3e-10 Score=89.42 Aligned_cols=110 Identities=20% Similarity=0.310 Sum_probs=80.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC---------------------------
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV--------------------------- 120 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------------- 120 (237)
...++.+|||||-+|..++.+|+.+. ...|.|+|+++..++.|+++++..--
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 34678999999999999999999987 66899999999999999998754310
Q ss_pred -------CCcEEEEec----cchHHHHHHhhcCCCCCceeEEEEe---------CCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 121 -------DHKINFIES----EALSVLDQLLKDSENEGSFDYAFVD---------ADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 121 -------~~~v~~~~~----d~~~~~~~~~~~~~~~~~~D~i~id---------~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
.+++.+... +..+++.. ....||+|++- ..-.....+|..+.++|.|||++|+.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~------~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDM------IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhh------ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 012222222 22234421 25789999753 22334689999999999999999997
Q ss_pred CcCC
Q 026547 181 NTLW 184 (237)
Q Consensus 181 ~~~~ 184 (237)
-=-|
T Consensus 209 PQpW 212 (288)
T KOG2899|consen 209 PQPW 212 (288)
T ss_pred CCch
Confidence 5544
No 159
>PLN02672 methionine S-methyltransferase
Probab=99.08 E-value=2.3e-09 Score=102.75 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=73.0
Q ss_pred cccHHHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC--------
Q 026547 53 STAPDAGQLMAMLLKLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV-------- 120 (237)
Q Consensus 53 ~~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------- 120 (237)
...+.+..++..+.... ++.+|||+|||+|..++.+++..+ ..+|+++|+++.+++.|++|++.+++
T Consensus 97 IPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~ 175 (1082)
T PLN02672 97 IPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY 175 (1082)
T ss_pred cCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence 34466666666643321 246899999999999999999876 67999999999999999999987643
Q ss_pred -------CCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe
Q 026547 121 -------DHKINFIESEALSVLDQLLKDSENEGSFDYAFVD 154 (237)
Q Consensus 121 -------~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id 154 (237)
.++++++++|..+.+... ..+||+|+.+
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSN 210 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGC 210 (1082)
T ss_pred ccccccccccEEEEECchhhhcccc------CCceEEEEEC
Confidence 247999999987765321 2379999865
No 160
>PHA03412 putative methyltransferase; Provisional
Probab=99.08 E-value=2.9e-09 Score=85.60 Aligned_cols=114 Identities=13% Similarity=0.229 Sum_probs=80.8
Q ss_pred ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIP--EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
.....++.+. .....+.+|||+|||+|..++.+++.++ +..+|+++|+++.+++.|+++. .++.++++|+
T Consensus 35 TP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~ 106 (241)
T PHA03412 35 TPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADA 106 (241)
T ss_pred CCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcch
Confidence 3444555443 1223467999999999999999988653 2569999999999999999875 2478899988
Q ss_pred hHHHHHHhhcCCCCCceeEEEEeCCC---------------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 132 LSVLDQLLKDSENEGSFDYAFVDADK---------------VNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~D~i~id~~~---------------~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
.+.. + ..+||+|+.+.+- .....+++.+.+++++|+.|+-.+++
T Consensus 107 ~~~~--~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 107 LTTE--F------DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred hccc--c------cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence 6532 1 3689999976321 01235777888888888876555554
No 161
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.07 E-value=2.1e-09 Score=83.50 Aligned_cols=109 Identities=23% Similarity=0.285 Sum_probs=72.4
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--CCCcEEEEeccchHHH-HHHhhcCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--VDHKINFIESEALSVL-DQLLKDSE 143 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-~~~~~~~~ 143 (237)
...++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.+++.++ ...++.+...+.-+.. ....
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---- 115 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---- 115 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----
T ss_pred hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----
Confidence 356788999999999999999998753 67999999998 9999999998876 4567888777654422 2221
Q ss_pred CCCceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 144 NEGSFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 144 ~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
...+||+|+... ....+..+++.+.++|+++|.+++..
T Consensus 116 ~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 116 EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 136899998643 24557788899999999998866653
No 162
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.7e-09 Score=87.40 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=90.6
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (237)
......++.......++..|+|-|+|+|..+.++++++.+.++++.+|..+...+.|++.|++.|+.+++++.+.|....
T Consensus 90 Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~ 169 (314)
T KOG2915|consen 90 YTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS 169 (314)
T ss_pred ecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC
Confidence 34445566677788999999999999999999999999889999999999999999999999999999999999887552
Q ss_pred HHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeE
Q 026547 135 LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGI 176 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~ 176 (237)
- +.. ....+|.||+|...++ ..+--+.+.|+.+|.
T Consensus 170 G--F~~---ks~~aDaVFLDlPaPw--~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 170 G--FLI---KSLKADAVFLDLPAPW--EAIPHAAKILKDEGG 204 (314)
T ss_pred C--ccc---cccccceEEEcCCChh--hhhhhhHHHhhhcCc
Confidence 1 100 1368999999976543 333334456676664
No 163
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.07 E-value=4.1e-10 Score=85.80 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=59.6
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA 151 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i 151 (237)
+.|+|+.||.|..++.||+... +|++||+++..++.++.+.+-+|..++|+++++|..+.++.+... ..+|+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~----~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSN----KIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccc----ccccEE
Confidence 3699999999999999999754 899999999999999999999999999999999999987665211 228999
Q ss_pred EEeC
Q 026547 152 FVDA 155 (237)
Q Consensus 152 ~id~ 155 (237)
|++.
T Consensus 74 FlSP 77 (163)
T PF09445_consen 74 FLSP 77 (163)
T ss_dssp EE--
T ss_pred EECC
Confidence 9984
No 164
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.07 E-value=2.5e-10 Score=90.07 Aligned_cols=145 Identities=15% Similarity=0.184 Sum_probs=97.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
-+++||+|||+|..+-.+-... .+++|+|+|..|++.|.++ |+- -++.++++..+++.. ..++||+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~Y--D~L~~Aea~~Fl~~~-----~~er~DL 191 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLY--DTLYVAEAVLFLEDL-----TQERFDL 191 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cch--HHHHHHHHHHHhhhc-----cCCcccc
Confidence 5799999999999988776543 3899999999999988774 322 256777887777643 2589999
Q ss_pred EEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC---CCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEee
Q 026547 151 AFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL---WGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHV 224 (237)
Q Consensus 151 i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 224 (237)
|..-.. ......+|-.+..+|+|||.+.|+-=. +.+.+..|+.+ ...-+.+.+......++++.-+
T Consensus 192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~R--------yAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQR--------YAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred hhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhh--------hccchHHHHHHHHhcCceEEEe
Confidence 964321 233456777777999999999996433 22222323211 1223455555555667765533
Q ss_pred -----------ecCCceEEEEEcC
Q 026547 225 -----------PLGDGITICWRIF 237 (237)
Q Consensus 225 -----------p~~~Gl~i~~~~~ 237 (237)
|+..++.|++|+.
T Consensus 264 ~~ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 264 EDTTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred ecccchhhcCCCCCCceEEEecCC
Confidence 5677888888763
No 165
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.07 E-value=5.7e-09 Score=90.00 Aligned_cols=122 Identities=11% Similarity=0.083 Sum_probs=86.9
Q ss_pred ccccHHHHHHHH-HHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe
Q 026547 52 MSTAPDAGQLMA-MLLKLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE 128 (237)
Q Consensus 52 ~~~~~~~~~~l~-~l~~~~~--~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 128 (237)
..+.....+.|. .+....+ +.+|||+|||+|..++.+++.. .+|+++|.++++++.++++++..++. +++++.
T Consensus 176 ~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~ 251 (353)
T TIGR02143 176 TQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQIIR 251 (353)
T ss_pred ccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 334454444443 4434332 4579999999999999999864 38999999999999999999999885 599999
Q ss_pred ccchHHHHHHhh-------c--CCCCCceeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEEe
Q 026547 129 SEALSVLDQLLK-------D--SENEGSFDYAFVDADKVN-YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 129 ~d~~~~~~~~~~-------~--~~~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+|+.++++.... . +.....||+||+|.+... ....++.+.+ +++++.++
T Consensus 252 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 252 MSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred cCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence 999888764211 0 000124899999987554 4566666654 67887775
No 166
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=3.9e-09 Score=92.76 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=97.7
Q ss_pred CCccccHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE
Q 026547 50 AMMSTAPDAGQLMAMLLK----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN 125 (237)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~ 125 (237)
.|....+...+.|...+. ..+.+++||+-||.|..++.+|+. ..+|+|+|+++++++.|+++.+.+++.+ ++
T Consensus 269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~ 344 (432)
T COG2265 269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VE 344 (432)
T ss_pred CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EE
Confidence 556677777777766543 345679999999999999999964 4599999999999999999999999977 99
Q ss_pred EEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcH-HHHHHHHccCCCCeEEEEe
Q 026547 126 FIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYW-NYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 126 ~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~ 180 (237)
|..+++.++.+...+ ...+|.|++|.+..... ++++.+ ..++|..++.++
T Consensus 345 f~~~~ae~~~~~~~~----~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS 395 (432)
T COG2265 345 FIAGDAEEFTPAWWE----GYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS 395 (432)
T ss_pred EEeCCHHHHhhhccc----cCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence 999999998887521 25889999998876655 666666 456666666664
No 167
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.06 E-value=2.9e-09 Score=90.12 Aligned_cols=96 Identities=16% Similarity=0.068 Sum_probs=69.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC----CCcEEEEeccchHHHHHHhhcCCCC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV----DHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++.+..+. ..++.+..+|..+. .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence 5679999999999999999974 56999999999999999999876532 13578888886442 3
Q ss_pred CceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEE
Q 026547 146 GSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 146 ~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~ 179 (237)
++||+|++.....+ ....++.+. .+.+||+++.
T Consensus 211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs 248 (315)
T PLN02585 211 GKYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIIS 248 (315)
T ss_pred CCcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence 78999986533222 223455554 3466777664
No 168
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.1e-09 Score=85.26 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=85.6
Q ss_pred HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCC---------CCcEEE
Q 026547 58 AGQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGV---------DHKINF 126 (237)
Q Consensus 58 ~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~---------~~~v~~ 126 (237)
.+..+..|-. ..++-++||+|+|+||++..+++.+...+. .+|||.-++.++.+++++...-. ..++.+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 3444544443 456779999999999999999977654444 59999999999999999976541 146788
Q ss_pred EeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 127 IESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
+.||.....+. ..+||.|++.+..+.. .+.+...|++||.|++
T Consensus 149 vvGDgr~g~~e-------~a~YDaIhvGAaa~~~---pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 149 VVGDGRKGYAE-------QAPYDAIHVGAAASEL---PQELLDQLKPGGRLLI 191 (237)
T ss_pred EeCCccccCCc-------cCCcceEEEccCcccc---HHHHHHhhccCCeEEE
Confidence 99999876554 4899999998765543 4567788899998887
No 169
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.05 E-value=3.9e-09 Score=84.93 Aligned_cols=130 Identities=8% Similarity=-0.042 Sum_probs=87.6
Q ss_pred CCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH------h---
Q 026547 47 HPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK------K--- 117 (237)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~------~--- 117 (237)
.++......+...+.+..+. ..++.+||..|||.|..+.+||.. +-+|+|+|+++..++.+.+... .
T Consensus 21 ~~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~ 96 (226)
T PRK13256 21 VGFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGND 96 (226)
T ss_pred CCCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccc
Confidence 34434444555444444432 234579999999999999999984 6789999999999988755210 0
Q ss_pred --cCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 118 --AGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 118 --~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
.-....++++++|..+.-+.. ...++||+|+-. .+......+.+.+.++|+|||.+++-....
T Consensus 97 ~~~~~~~~i~~~~gD~f~l~~~~----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 97 YKLYKGDDIEIYVADIFNLPKIA----NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cceeccCceEEEEccCcCCCccc----cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 001236899999998863210 013689998643 233445688999999999999887765443
No 170
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.04 E-value=1.4e-08 Score=85.03 Aligned_cols=127 Identities=23% Similarity=0.269 Sum_probs=100.9
Q ss_pred ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
..+......+...+....++..|||++++.|.=|.+++..+...+.|++.|+++..+...++++++.|..+ +.+...|+
T Consensus 67 ~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~ 145 (283)
T PF01189_consen 67 FYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADA 145 (283)
T ss_dssp EEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHH
T ss_pred EEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecc
Confidence 33445555555666677788899999999999999999999878999999999999999999999999864 77777888
Q ss_pred hHHHHHHhhcCCCCCceeEEEEeCCCcCc-------------------------HHHHHHHHccC----CCCeEEEEeCc
Q 026547 132 LSVLDQLLKDSENEGSFDYAFVDADKVNY-------------------------WNYHERLMKLL----KVGGIAVYDNT 182 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~-------------------------~~~~~~~~~~L----~~gG~lv~~~~ 182 (237)
....+... ...||.|++|++.+.. .+.++.+.+.+ +|||.+|...+
T Consensus 146 ~~~~~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 146 RKLDPKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp HHHHHHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred cccccccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 77765442 2469999999754221 35677788999 99999999888
Q ss_pred CC
Q 026547 183 LW 184 (237)
Q Consensus 183 ~~ 184 (237)
..
T Consensus 221 S~ 222 (283)
T PF01189_consen 221 SL 222 (283)
T ss_dssp HH
T ss_pred cH
Confidence 64
No 171
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.04 E-value=5.4e-09 Score=81.67 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=89.8
Q ss_pred ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCC--------EEEEEeCCchHHHHHHHHHHhcCCCCc
Q 026547 52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------QIMAIDVNRETYEIGLPVIKKAGVDHK 123 (237)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~--------~v~~vD~~~~~~~~a~~~~~~~~~~~~ 123 (237)
-++.+..+..|..++...++..|||--||+|...+..+....... +++|.|+++.+++.++++++.+|+...
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 346788899999999988889999999999999887665544222 499999999999999999999999888
Q ss_pred EEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-----------cCcHHHHHHHHccCCCCeEEEEe
Q 026547 124 INFIESEALSVLDQLLKDSENEGSFDYAFVDADK-----------VNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 124 v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+.+.+.|+.+.- + ..+++|.|+.|.+- .-+..+++.+.+.+++..++++.
T Consensus 90 i~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 90 IDFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred eEEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999999998764 1 14799999999542 12456778888899997677664
No 172
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.03 E-value=4.3e-09 Score=88.34 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=76.3
Q ss_pred CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547 48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI 127 (237)
Q Consensus 48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 127 (237)
+..++ +++.....+...+...++.+|||||||+|..|..++.. ..+|+++|+++.+++.+++++...+..++++++
T Consensus 15 GQnFL-~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii 90 (294)
T PTZ00338 15 GQHIL-KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVI 90 (294)
T ss_pred Ccccc-CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence 33443 45555555555566677889999999999999999875 458999999999999999999877756789999
Q ss_pred eccchHHHHHHhhcCCCCCceeEEEEeCCCc
Q 026547 128 ESEALSVLDQLLKDSENEGSFDYAFVDADKV 158 (237)
Q Consensus 128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~ 158 (237)
++|+.+.. ...||.|+.+.+-.
T Consensus 91 ~~Dal~~~---------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 91 EGDALKTE---------FPYFDVCVANVPYQ 112 (294)
T ss_pred ECCHhhhc---------ccccCEEEecCCcc
Confidence 99997752 25789988776543
No 173
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.03 E-value=3.8e-09 Score=84.91 Aligned_cols=127 Identities=17% Similarity=0.219 Sum_probs=87.2
Q ss_pred CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh-cC-------
Q 026547 48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK-AG------- 119 (237)
Q Consensus 48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~------- 119 (237)
++......+...+++.. ....++.+||..|||.|+-..+||.. +.+|+|+|+++.+++.+.+.... ..
T Consensus 16 ~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~ 91 (218)
T PF05724_consen 16 PWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF 91 (218)
T ss_dssp TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTE
T ss_pred CCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccce
Confidence 44444556766666666 34556679999999999999999984 67999999999999887432211 00
Q ss_pred ---CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 120 ---VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 120 ---~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
...+|+++++|..+.-+.. .++||+|+=. .+......|.+.+.++|+|||.+++-...+
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~ 158 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEY 158 (218)
T ss_dssp EEETTSSEEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES
T ss_pred eeecCCceEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEc
Confidence 1246899999998864322 2589999743 234456789999999999999954443433
No 174
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.02 E-value=3e-09 Score=83.64 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=93.1
Q ss_pred cHHHHHHHHHHHhhcC-CC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 55 APDAGQLMAMLLKLVN-AK-KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~-~~-~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
.+....++..|....+ .. +|||||||+|-.+.++|.++| ..+...-|+++......+.++++.++.+-...+.-|+.
T Consensus 8 eRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 8 ERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVS 86 (204)
T ss_pred hhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecC
Confidence 4455556666655433 33 499999999999999999998 88999999999998899999998887653344555554
Q ss_pred HHHHHHh-hcCCCCCceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547 133 SVLDQLL-KDSENEGSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNTLWG 185 (237)
Q Consensus 133 ~~~~~~~-~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 185 (237)
+...... ..+...++||.||+-. .......+|+.+.++|++||.+++-..+..
T Consensus 87 ~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 87 APPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred CCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 4311111 0001246899998642 233356788889999999999999877753
No 175
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.02 E-value=6.6e-09 Score=89.84 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=86.5
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA 151 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i 151 (237)
-+|||+.||+|..++.++...+...+|+++|++++.++.+++|++.++.. +++++++|+...+... ..+||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEE
Confidence 48999999999999999986532368999999999999999999988764 5899999999887754 3679999
Q ss_pred EEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 152 FVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 152 ~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
++|.. ....++++.+.+.+++||++.+.
T Consensus 119 dlDPf-Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDPF-GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCCC-CCcHHHHHHHHHhcccCCEEEEE
Confidence 99984 44468999999999999999886
No 176
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=4.8e-09 Score=88.87 Aligned_cols=122 Identities=19% Similarity=0.160 Sum_probs=100.7
Q ss_pred ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
|.+.....+....+-....+..|||.-+|.|+.++.+|+... .+|+++|++|..++..+++++-+++.+++..++||+
T Consensus 170 ~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~ 247 (341)
T COG2520 170 YFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA 247 (341)
T ss_pred EECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence 334455555555555566789999999999999999998643 349999999999999999999999998899999999
Q ss_pred hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
.+..+.+ ..+|-|++..... ..+++....+.+++||+|.++...
T Consensus 248 rev~~~~-------~~aDrIim~~p~~-a~~fl~~A~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 248 REVAPEL-------GVADRIIMGLPKS-AHEFLPLALELLKDGGIIHYYEFV 291 (341)
T ss_pred HHhhhcc-------ccCCEEEeCCCCc-chhhHHHHHHHhhcCcEEEEEecc
Confidence 9987754 7899999887653 356788888999999999998765
No 177
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.99 E-value=1.3e-09 Score=84.58 Aligned_cols=98 Identities=13% Similarity=0.221 Sum_probs=73.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++.+|||+|||.|....++... ++.+.+|+|++++.+..+.++ | +.++++|+.+-+..+ ++++|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f-----~d~sF 76 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADF-----PDQSF 76 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhC-----CCCCc
Confidence 45679999999999998888774 478999999999987766553 3 779999999988765 46899
Q ss_pred eEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 149 DYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 149 D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
|.|++...- .+....++++.|.-+ .+++-+-|.
T Consensus 77 D~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNF 112 (193)
T PF07021_consen 77 DYVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNF 112 (193)
T ss_pred cEEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence 999987543 334556666655433 366666665
No 178
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.98 E-value=2.2e-09 Score=84.97 Aligned_cols=105 Identities=16% Similarity=0.280 Sum_probs=81.8
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCC-CCcEEEEeccchHHHHHHhhcCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGV-DHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
...++.+|||.+.|-||.++..++. ++ +|+++|.+|..++.|.-|-=..++ +..++++.||+.+.++.+ .
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~ 202 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----D 202 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----C
Confidence 3456889999999999999988774 55 999999999999877543211111 235899999999999876 4
Q ss_pred CCceeEEEEeCCC------cCcHHHHHHHHccCCCCeEEEE
Q 026547 145 EGSFDYAFVDADK------VNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 145 ~~~~D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
+++||+|+-|.+. -...++++++.+.|++||.++-
T Consensus 203 D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 203 DESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred ccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 6789999988542 2246899999999999999874
No 179
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=9.6e-09 Score=79.15 Aligned_cols=88 Identities=17% Similarity=0.329 Sum_probs=69.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
..++.|+|+|||+|..++..+..- ..+|+|+|+++++++.+++|..+. ..+++++.+|+.++ ..++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~----------~~~~ 109 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDF----------RGKF 109 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhc----------CCcc
Confidence 466789999999999988776543 369999999999999999999883 35799999999887 5889
Q ss_pred eEEEEeCC-----CcCcHHHHHHHHcc
Q 026547 149 DYAFVDAD-----KVNYWNYHERLMKL 170 (237)
Q Consensus 149 D~i~id~~-----~~~~~~~~~~~~~~ 170 (237)
|.++.+.+ ...-..|++...+.
T Consensus 110 dtvimNPPFG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 110 DTVIMNPPFGSQRRHADRPFLLKALEI 136 (198)
T ss_pred ceEEECCCCccccccCCHHHHHHHHHh
Confidence 98888743 12234566666554
No 180
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.96 E-value=7.9e-09 Score=80.80 Aligned_cols=96 Identities=23% Similarity=0.273 Sum_probs=81.3
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF 152 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 152 (237)
+++|||+|.|.-++.+|-..| +.+++.+|.....+...+...++.|+. +++++++.+.+ .. ...+||+|+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVT 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEE
Confidence 799999999999999998887 889999999999999999999999996 59999999988 11 158999999
Q ss_pred EeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 153 VDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 153 id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
.-+.. ....+++.+.+++++||.+++
T Consensus 121 aRAv~-~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 121 ARAVA-PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp EESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred eehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence 88755 557889999999999999886
No 181
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.94 E-value=6.5e-09 Score=86.90 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=74.1
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547 59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL 138 (237)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 138 (237)
.+++..+ ...++..+||++||.|+.+..+++.++++++|+|+|.++++++.+++.+.+ .++++++++|..++...+
T Consensus 9 ~Evl~~L-~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 9 DEVVDAL-AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHhh-CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence 3444444 234567999999999999999999987679999999999999999998865 368999999998876555
Q ss_pred hhcCCCCCceeEEEEeCCCcC
Q 026547 139 LKDSENEGSFDYAFVDADKVN 159 (237)
Q Consensus 139 ~~~~~~~~~~D~i~id~~~~~ 159 (237)
.+ ...++|.|++|.+.+.
T Consensus 85 ~~---~~~~vDgIl~DLGvSs 102 (296)
T PRK00050 85 AE---GLGKVDGILLDLGVSS 102 (296)
T ss_pred Hc---CCCccCEEEECCCccc
Confidence 21 1238999999866544
No 182
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.94 E-value=4.9e-09 Score=85.78 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=81.6
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547 62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 141 (237)
+.......+.++|||||.|.|..+..+++..| +.+++.+|+ |+.++.+++ .++|+++.+|..+.+
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~------ 156 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL------ 156 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC------
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhh------
Confidence 33334455678999999999999999999998 899999998 888888888 578999999987442
Q ss_pred CCCCCceeEEEEeCCCcC-----cHHHHHHHHccCCCC--eEEEEeCcCC
Q 026547 142 SENEGSFDYAFVDADKVN-----YWNYHERLMKLLKVG--GIAVYDNTLW 184 (237)
Q Consensus 142 ~~~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~g--G~lv~~~~~~ 184 (237)
+. +|++++...-++ ....++++.+.|+|| |.|++.+.+.
T Consensus 157 ---P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 157 ---PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp ---SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred ---cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 24 999998754433 356899999999999 9999888775
No 183
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.93 E-value=8.9e-09 Score=91.07 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=79.7
Q ss_pred CCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 71 AKKTIEIGVFTGYSLLLTALTI---PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
.+.|+|+|||+|-+....+++. ....+|++||.++.+....++.++..++.++|+++++|+.++-. ..+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence 4689999999999987776654 12469999999998888888877888998999999999988733 479
Q ss_pred eeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 148 FDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 148 ~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
.|+|+.- +..+..++.+....+.|+|||+++=+..
T Consensus 259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~ 298 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSSY 298 (448)
T ss_dssp EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSEE
T ss_pred eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcch
Confidence 9999743 2344567888888899999999886443
No 184
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.93 E-value=1.4e-08 Score=83.88 Aligned_cols=94 Identities=15% Similarity=0.079 Sum_probs=72.7
Q ss_pred CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547 48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI 127 (237)
Q Consensus 48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 127 (237)
+..+. +++...+.+...+...++.+|||||||+|..+..+++. ..+|+++|+++.+++.+++++.. .++++++
T Consensus 8 GQnfl-~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii 80 (258)
T PRK14896 8 GQHFL-IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEII 80 (258)
T ss_pred Ccccc-CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEE
Confidence 33443 45666666666666677889999999999999999986 45899999999999999988754 2469999
Q ss_pred eccchHHHHHHhhcCCCCCceeEEEEeCCC
Q 026547 128 ESEALSVLDQLLKDSENEGSFDYAFVDADK 157 (237)
Q Consensus 128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~ 157 (237)
++|+.+.. ...||.|+.+.+.
T Consensus 81 ~~D~~~~~---------~~~~d~Vv~NlPy 101 (258)
T PRK14896 81 EGDALKVD---------LPEFNKVVSNLPY 101 (258)
T ss_pred EeccccCC---------chhceEEEEcCCc
Confidence 99997752 2457988876543
No 185
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.90 E-value=1.8e-08 Score=85.25 Aligned_cols=83 Identities=12% Similarity=0.255 Sum_probs=65.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-CCCCcEEEEe-ccchHHHHHHhhcCCCCCc
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-GVDHKINFIE-SEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~ 147 (237)
+..++||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.++++++. .+..+....... ..+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCc
Confidence 356999999999998888877665 789999999999999999999999 7888898864 444444332211 1468
Q ss_pred eeEEEEeCC
Q 026547 148 FDYAFVDAD 156 (237)
Q Consensus 148 ~D~i~id~~ 156 (237)
||+|+++.+
T Consensus 190 fDlivcNPP 198 (321)
T PRK11727 190 FDATLCNPP 198 (321)
T ss_pred eEEEEeCCC
Confidence 999998753
No 186
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.88 E-value=2.2e-08 Score=84.40 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=96.7
Q ss_pred ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-c
Q 026547 52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-E 130 (237)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d 130 (237)
.++.|..++.+-+|+...++..|||=-||||...+....- +++++|.|++..+++-|+.|++.+++.+ ..+... |
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~D 254 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLD 254 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecc
Confidence 3577999999999999999999999999999998877653 7899999999999999999999999765 444444 8
Q ss_pred chHHHHHHhhcCCCCCceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547 131 ALSVLDQLLKDSENEGSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
+.... + ...++|.|..|.+- +.+.++++.+.+.|++||.+++-.
T Consensus 255 a~~lp--l-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 255 ATNLP--L-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred cccCC--C-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 76652 3 13469999998531 125678888889999999998853
No 187
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.87 E-value=2.9e-08 Score=82.67 Aligned_cols=101 Identities=14% Similarity=0.014 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
+++...+.+...+...++.+|||||||+|..+..++... .+|+++|+++.+++.+++++.. ++++++++|+.+
T Consensus 26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~ 98 (272)
T PRK00274 26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALK 98 (272)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhc
Confidence 455555555555566677899999999999999999874 3899999999999999987642 479999999987
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHH
Q 026547 134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM 168 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~ 168 (237)
.... .-.++.|+.+.+-.....++..+.
T Consensus 99 ~~~~-------~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 99 VDLS-------ELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred CCHH-------HcCcceEEEeCCccchHHHHHHHH
Confidence 5211 011477776655444445555554
No 188
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.86 E-value=7.4e-09 Score=81.31 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=74.0
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
.....++..|+|.-||.|+.++.++... ..|++||++|..+.-|+.+++-+|+.++|+|++||.++....++..
T Consensus 89 v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~--- 162 (263)
T KOG2730|consen 89 VVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD--- 162 (263)
T ss_pred HHHhcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---
Confidence 3344478899999999999999998854 4899999999999999999999999999999999999998887544
Q ss_pred CCceeEEEEeCC
Q 026547 145 EGSFDYAFVDAD 156 (237)
Q Consensus 145 ~~~~D~i~id~~ 156 (237)
...+|+||...+
T Consensus 163 K~~~~~vf~spp 174 (263)
T KOG2730|consen 163 KIKYDCVFLSPP 174 (263)
T ss_pred hheeeeeecCCC
Confidence 466889997654
No 189
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.86 E-value=9.8e-09 Score=86.13 Aligned_cols=105 Identities=19% Similarity=0.303 Sum_probs=81.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
..+++.|||+|||+|-++++.|++. ..+|++||.+. +++.|++.+..+++.+.|++++|.+.+. .++ .++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~eK 127 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VEK 127 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEE--ecC-----ccc
Confidence 6789999999999999999999875 46999999764 6699999999999999999999999886 331 389
Q ss_pred eeEEEEeCC--CcCcHHHHHHHH----ccCCCCeEEEEeCc
Q 026547 148 FDYAFVDAD--KVNYWNYHERLM----KLLKVGGIAVYDNT 182 (237)
Q Consensus 148 ~D~i~id~~--~~~~~~~~~~~~----~~L~~gG~lv~~~~ 182 (237)
.|+|+.... .-.+...++.+. +.|+|||++.-+-+
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence 999975432 111233444443 79999999876554
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.86 E-value=3.5e-08 Score=88.93 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=84.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
....+||||||.|.++..+|...| +..++|+|+....+..+.+...+.++. ++.++.+|+......+ ..+++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~-----~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDL-----PNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhc-----Cccccc
Confidence 356899999999999999999988 789999999999999888888888875 5888888875444433 247899
Q ss_pred EEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEe
Q 026547 150 YAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 150 ~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~ 180 (237)
.|++..+-+. .+++++.+.+.|+|||.|.+.
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 9988643211 468999999999999988763
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.85 E-value=3.8e-08 Score=81.16 Aligned_cols=101 Identities=16% Similarity=0.083 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
+++...+.+...+...++.+|||||||+|..+..+++..+ +|+++|+++.+++.+++++.. .++++++++|+.+
T Consensus 13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~ 86 (253)
T TIGR00755 13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALK 86 (253)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhc
Confidence 4555555555555666788999999999999999998754 699999999999999987743 3569999999877
Q ss_pred HHHHHhhcCCCCCcee---EEEEeCCCcCcHHHHHHHHc
Q 026547 134 VLDQLLKDSENEGSFD---YAFVDADKVNYWNYHERLMK 169 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D---~i~id~~~~~~~~~~~~~~~ 169 (237)
... ..+| +|+.+.........+..+..
T Consensus 87 ~~~---------~~~d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 87 VDL---------PDFPKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred CCh---------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence 532 2344 66655544444455555543
No 192
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=4.4e-08 Score=74.84 Aligned_cols=104 Identities=21% Similarity=0.214 Sum_probs=80.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
.++.++|||||+|+.+.+++....++..+.++|++|.+++..++-.+.++. ++.+++.|....+. .++.|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD 112 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD 112 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence 388999999999999999999887788999999999999999888877664 47888888777654 48999
Q ss_pred EEEEeCCC--------------------cC----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547 150 YAFVDADK--------------------VN----YWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 150 ~i~id~~~--------------------~~----~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+++.+.+- .+ ...++..+-.+|.|.|++.+-.+.
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 98765210 01 234555555788999998875443
No 193
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.84 E-value=1.4e-08 Score=80.40 Aligned_cols=90 Identities=14% Similarity=0.213 Sum_probs=65.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++.+|||+|||+|..+..++... ...++++|+++++++.+++. +++++++|+.+.++.+ ..++|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sf 76 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF-----PDKSF 76 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc-----CCCCc
Confidence 356799999999999998887653 45789999999998887641 3678888876643222 14789
Q ss_pred eEEEEeCC---CcCcHHHHHHHHccCCC
Q 026547 149 DYAFVDAD---KVNYWNYHERLMKLLKV 173 (237)
Q Consensus 149 D~i~id~~---~~~~~~~~~~~~~~L~~ 173 (237)
|+|++... ..+...+++++.+.+++
T Consensus 77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 77 DYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 99998753 23455677777776554
No 194
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.82 E-value=1.3e-07 Score=77.68 Aligned_cols=121 Identities=19% Similarity=0.203 Sum_probs=94.8
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547 64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS 142 (237)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 142 (237)
.|.....+-+||||.||.|...+......+. ...|...|.++..++..++.+++.|+.+.++|.++|+.+.-. +++-
T Consensus 129 ~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~l- 206 (311)
T PF12147_consen 129 RLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAAL- 206 (311)
T ss_pred HHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhcc-
Confidence 3444457889999999999998888777774 368999999999999999999999999878999999988532 2211
Q ss_pred CCCCceeEEEEeCCCcC------cHHHHHHHHccCCCCeEEEEeCcCCCCcc
Q 026547 143 ENEGSFDYAFVDADKVN------YWNYHERLMKLLKVGGIAVYDNTLWGGTV 188 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~ 188 (237)
...++++++.+-.+. ....+..+...+.|||++|..+--|+...
T Consensus 207 --~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl 256 (311)
T PF12147_consen 207 --DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL 256 (311)
T ss_pred --CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence 466899988764333 23457777889999999998876665543
No 195
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=7.9e-09 Score=82.30 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=76.4
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547 73 KTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA 151 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i 151 (237)
+|||+|||.|.....+.+..+. +-+|+++|.+|.+++..+++-.... .++...+.|....- + ..+...+++|+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~--~-~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPS--L-KEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchh--c-cCCCCcCccceE
Confidence 8999999999999999887762 2799999999999998888654322 35555555543211 1 112345788877
Q ss_pred EE---e--CCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 152 FV---D--ADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 152 ~i---d--~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
.+ - .........++.+.++|+|||.|++-|.
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 42 2 2355577899999999999999999876
No 196
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.79 E-value=6.7e-09 Score=82.72 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=75.2
Q ss_pred HHHHHHHHhhcCCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547 59 GQLMAMLLKLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ 137 (237)
Q Consensus 59 ~~~l~~l~~~~~~~-~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 137 (237)
..++..++...+.. .++|+|||+|..++.+|.+.. +|+++|+++.+++.|++.....-......+...+..+++.
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g- 96 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG- 96 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC-
Confidence 34555566655554 899999999987778887754 8999999999999888864322111112222222223321
Q ss_pred HhhcCCCCCceeEEEEeCCC--cCcHHHHHHHHccCCCCe-EEEEeC
Q 026547 138 LLKDSENEGSFDYAFVDADK--VNYWNYHERLMKLLKVGG-IAVYDN 181 (237)
Q Consensus 138 ~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~gG-~lv~~~ 181 (237)
+.++.|+|.+.... -+...+++.+.++||+.| ++++=+
T Consensus 97 ------~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 97 ------GEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred ------CCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEE
Confidence 25899999865322 246789999999999876 777633
No 197
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=78.83 Aligned_cols=95 Identities=22% Similarity=0.205 Sum_probs=70.2
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
+.-|||||||+|.++..+.. ++-..+|+|+|+.|++.|.+.- .. -.++.+|.=+-++ +..++||-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~e--~e----gdlil~DMG~Glp------frpGtFDg 115 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVERE--LE----GDLILCDMGEGLP------FRPGTFDG 115 (270)
T ss_pred CcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHHhh--hh----cCeeeeecCCCCC------CCCCccce
Confidence 67899999999999988775 3568999999999999998732 11 2466777655444 34699998
Q ss_pred EEEe--------CCC------cCcHHHHHHHHccCCCCeEEEEe
Q 026547 151 AFVD--------ADK------VNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 151 i~id--------~~~------~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
++.- +++ .....||..+...|++|+..|+.
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 8632 221 22346788889999999988875
No 198
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.78 E-value=4.1e-08 Score=78.19 Aligned_cols=98 Identities=21% Similarity=0.278 Sum_probs=83.1
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc-ee
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS-FD 149 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~-~D 149 (237)
+++++|||+|.|.-++.+|-..| +.+|+-+|.....+...+....+.++. +++++++.++++... .. ||
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCc
Confidence 68999999999999999997777 777999999999999999999999985 599999999887442 23 99
Q ss_pred EEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 150 YAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
+|..-+.. ....+.+.+.+++++||.+++
T Consensus 138 ~vtsRAva-~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 138 VVTSRAVA-SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEEeehcc-chHHHHHHHHHhcccCCcchh
Confidence 99877644 456788899999999888764
No 199
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.73 E-value=2.1e-07 Score=78.47 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=87.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH--HHHhcCC----CCcEEEEeccchHHHHHHhhc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLP--VIKKAGV----DHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~--~~~~~~~----~~~v~~~~~d~~~~~~~~~~~ 141 (237)
....++||-+|-|.|.....+.+. |.-.+|+-+|++|.+++.++. .++..+- ++|++++..|+.+++...
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a--- 362 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA--- 362 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh---
Confidence 356789999999999999998875 546899999999999999983 3333321 479999999999999876
Q ss_pred CCCCCceeEEEEeCCCcC--------cHHHHHHHHccCCCCeEEEEeCc
Q 026547 142 SENEGSFDYAFVDADKVN--------YWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 142 ~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
.+.||.|++|...++ -.+|+..+.+.|+++|.+|+...
T Consensus 363 ---~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 363 ---ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred ---cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 479999999964333 25788888899999999999643
No 200
>PRK04148 hypothetical protein; Provisional
Probab=98.71 E-value=1.9e-07 Score=68.75 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547 59 GQLMAMLLKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ 137 (237)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 137 (237)
++++.......++.+|||||||+|. .+..|++. +..|+++|+++..++.++++ .++++.+|..+.-..
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLE 73 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHH
Confidence 4444444444456889999999997 67677753 67999999999988888775 268899998876555
Q ss_pred HhhcCCCCCceeEEEEeCCCcCcHHHHHHHHcc
Q 026547 138 LLKDSENEGSFDYAFVDADKVNYWNYHERLMKL 170 (237)
Q Consensus 138 ~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~ 170 (237)
+ -+.+|+|+.--........+-.+.+.
T Consensus 74 ~------y~~a~liysirpp~el~~~~~~la~~ 100 (134)
T PRK04148 74 I------YKNAKLIYSIRPPRDLQPFILELAKK 100 (134)
T ss_pred H------HhcCCEEEEeCCCHHHHHHHHHHHHH
Confidence 4 37899998776666655555555553
No 201
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.65 E-value=1.6e-07 Score=77.56 Aligned_cols=105 Identities=20% Similarity=0.266 Sum_probs=69.1
Q ss_pred CCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-hcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 71 AKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK-KAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 71 ~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
|++|+=||||. -.+++.+++....+..|+++|+++++.+.+++.++ ..|+..++.|+.+|..+....+ ..|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~~ 193 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KEY 193 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------ccC
Confidence 56999999995 44666777654447899999999999999999888 5677888999999987764333 789
Q ss_pred eEEEEeCCCc----CcHHHHHHHHccCCCCeEEEEeCc
Q 026547 149 DYAFVDADKV----NYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 149 D~i~id~~~~----~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
|+||+.+-.. .=.+.++.+.+.++||+.+++-..
T Consensus 194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 9999886544 557899999999999999998643
No 202
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=7.6e-07 Score=72.81 Aligned_cols=108 Identities=11% Similarity=0.008 Sum_probs=77.2
Q ss_pred CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547 48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI 127 (237)
Q Consensus 48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 127 (237)
+..++ .+....+-+-..+...++..|||||+|.|..|..+++. ..+|+++|+++.+++..++.+. ..++++++
T Consensus 9 GQnFL-~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi 81 (259)
T COG0030 9 GQNFL-IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVI 81 (259)
T ss_pred ccccc-cCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEE
Confidence 44444 34444445555566667889999999999999999986 4589999999999999988875 33579999
Q ss_pred eccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHH
Q 026547 128 ESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM 168 (237)
Q Consensus 128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~ 168 (237)
++|++.+.-.- ...++.|+.+.+-.-...++..+.
T Consensus 82 ~~DaLk~d~~~------l~~~~~vVaNlPY~Isspii~kll 116 (259)
T COG0030 82 NGDALKFDFPS------LAQPYKVVANLPYNISSPILFKLL 116 (259)
T ss_pred eCchhcCcchh------hcCCCEEEEcCCCcccHHHHHHHH
Confidence 99998863210 016788887766554455544444
No 203
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.65 E-value=3.8e-07 Score=78.72 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=72.3
Q ss_pred CCccccHHHHHHHHHHHh-hcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE
Q 026547 50 AMMSTAPDAGQLMAMLLK-LVN--AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF 126 (237)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~-~~~--~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 126 (237)
.|..+.+...+.|...+. ..+ +..|||+.||.|..++.+|... .+|+|||.++++++.|+++++.+++. +++|
T Consensus 173 sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f 248 (352)
T PF05958_consen 173 SFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NVEF 248 (352)
T ss_dssp S---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEE
T ss_pred cCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cceE
Confidence 455666766666655433 222 3489999999999999999854 59999999999999999999999985 5999
Q ss_pred EeccchHHHHHHhhc---------CCCCCceeEEEEeCCCcCcH-HHHHHHH
Q 026547 127 IESEALSVLDQLLKD---------SENEGSFDYAFVDADKVNYW-NYHERLM 168 (237)
Q Consensus 127 ~~~d~~~~~~~~~~~---------~~~~~~~D~i~id~~~~~~~-~~~~~~~ 168 (237)
+.+++.++...+... ......+|+|++|.+..... ..++.+.
T Consensus 249 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~ 300 (352)
T PF05958_consen 249 IRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK 300 (352)
T ss_dssp EE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred EEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence 999887754432110 00023689999998765543 4555553
No 204
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.62 E-value=2.4e-07 Score=79.02 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC---------CCCcEEEEeccchH-HHHHHh
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG---------VDHKINFIESEALS-VLDQLL 139 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~-~~~~~~ 139 (237)
++.+|||+|||-|.-..-+..+ .-..++|+|++...++.|+++++... ..-...++.+|... .+....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 5689999999988866555553 24699999999999999999984321 11235678888653 222111
Q ss_pred hcCCCCCceeEEEEeCC-------CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 140 KDSENEGSFDYAFVDAD-------KVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
. +...+||+|-+-.. ......+++.+...|+|||+++..-
T Consensus 140 ~--~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 140 P--PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp S--STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred c--ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0 11259999976532 2334678999999999999998743
No 205
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.2e-07 Score=69.81 Aligned_cols=92 Identities=20% Similarity=0.331 Sum_probs=70.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
..+++++|+|||.|..+ ++..+++...|+|+|++|+.++.+++|.++..+. +++.++|..+.... .+.|
T Consensus 47 iEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-------~g~f 115 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-------GGIF 115 (185)
T ss_pred ccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-------CCeE
Confidence 46789999999999987 4444565778999999999999999999988874 68999999886543 3889
Q ss_pred eEEEEeCCC-----cCcHHHHHHHHccC
Q 026547 149 DYAFVDADK-----VNYWNYHERLMKLL 171 (237)
Q Consensus 149 D~i~id~~~-----~~~~~~~~~~~~~L 171 (237)
|.++++.+- ..-.++++...++.
T Consensus 116 DtaviNppFGTk~~~aDm~fv~~al~~~ 143 (185)
T KOG3420|consen 116 DTAVINPPFGTKKKGADMEFVSAALKVA 143 (185)
T ss_pred eeEEecCCCCcccccccHHHHHHHHHHH
Confidence 999988531 11234555555443
No 206
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.57 E-value=2.9e-07 Score=70.59 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=60.2
Q ss_pred EEEeCCchHHHHHHHHHHhc--CCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCC
Q 026547 99 MAIDVNRETYEIGLPVIKKA--GVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKV 173 (237)
Q Consensus 99 ~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~ 173 (237)
+|+|+|++|++.|+++.+.. +..++++++++|+.+. + ...++||+|++... ..+....++++.+.|+|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p------~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-P------FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-C------CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 48999999999998776532 2235699999999775 2 12578999987643 34567889999999999
Q ss_pred CeEEEEeCcC
Q 026547 174 GGIAVYDNTL 183 (237)
Q Consensus 174 gG~lv~~~~~ 183 (237)
||.+++.+..
T Consensus 74 GG~l~i~d~~ 83 (160)
T PLN02232 74 GSRVSILDFN 83 (160)
T ss_pred CeEEEEEECC
Confidence 9999887654
No 207
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.56 E-value=1.9e-07 Score=75.50 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=58.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE-EEeccchHHH-HHHhhcCCCCC
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN-FIESEALSVL-DQLLKDSENEG 146 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~~~~~~~ 146 (237)
.+++.|||+|||+|.++..+++. + ..+|+++|+++.++.. .+++ .+++. +-..|+.... .... ....
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~---~l~~---~~~v~~~~~~ni~~~~~~~~~---~d~~ 142 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE---KLRQ---DERVKVLERTNIRYVTPADIF---PDFA 142 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH---HHhc---CCCeeEeecCCcccCCHhHcC---CCce
Confidence 35679999999999999999985 2 4689999999987754 1111 12232 2222333211 1110 0125
Q ss_pred ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
.+|++|+.. ...+..+.++|++ |.+++
T Consensus 143 ~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 143 TFDVSFISL-----ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence 788877654 2357778888898 65553
No 208
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=5.6e-07 Score=79.02 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=91.1
Q ss_pred CCccccHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE
Q 026547 50 AMMSTAPDAGQLMAMLLK----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN 125 (237)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~ 125 (237)
.|.......++.|+..+. ....+.+||+.||+|.+++.+|+.. .+|+|||++++.++.|+.+...+|++ +.+
T Consensus 359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~ 434 (534)
T KOG2187|consen 359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGIS-NAT 434 (534)
T ss_pred hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCcc-cee
Confidence 344566777777777655 4456789999999999999999864 49999999999999999999999986 499
Q ss_pred EEeccchHHHHHHhhcCCCCCcee-EEEEeCCCcC-cHHHHHHHHccCCCCeEEEE
Q 026547 126 FIESEALSVLDQLLKDSENEGSFD-YAFVDADKVN-YWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 126 ~~~~d~~~~~~~~~~~~~~~~~~D-~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~ 179 (237)
|++|.+++.++.+... ..++-+ ++++|.+... ...++..+...-++.-.+.+
T Consensus 435 Fi~gqaE~~~~sl~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyv 488 (534)
T KOG2187|consen 435 FIVGQAEDLFPSLLTP--CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYV 488 (534)
T ss_pred eeecchhhccchhccc--CCCCCceEEEECCCcccccHHHHHHHHhccCccceEEE
Confidence 9999999988887433 113455 5567765443 34455555554445554444
No 209
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.52 E-value=4.2e-07 Score=75.84 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=75.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.+++.|||+|||+|..+.+.+.+. ..+|++||.+ +|.++|++.++.+.+.+||.++.|-.++. ++ +++.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~ 244 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKV 244 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC------chhc
Confidence 357899999999999988777753 4699999975 69999999999999999999999998875 22 4889
Q ss_pred eEEEEeCC-----CcCcHHHHHHHHccCCCCeEEE
Q 026547 149 DYAFVDAD-----KVNYWNYHERLMKLLKVGGIAV 178 (237)
Q Consensus 149 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv 178 (237)
|+|+.... .+...+-+--.++.|+|.|.+.
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 99975421 1122222333448999999875
No 210
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.51 E-value=1.5e-06 Score=70.58 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
+....-+..-+...+++.|||||.|+|..|..+.+. +.+|+++|++|.++....+.++....+.+.++++||....-
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 455555555566778899999999999999999985 56999999999999999999887777789999999987651
Q ss_pred HHHhhcCCCCCceeEEEEeCCC
Q 026547 136 DQLLKDSENEGSFDYAFVDADK 157 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~~ 157 (237)
...||.++.+.+.
T Consensus 121 ---------~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 121 ---------LPRFDGCVSNLPY 133 (315)
T ss_pred ---------CcccceeeccCCc
Confidence 3678998876543
No 211
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.51 E-value=3.6e-06 Score=68.36 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=86.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
+..++||||.|.|..|..++..+. +|++.|.|+.|.. .+++.|. +++. ..++ .. ...+||
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~----rL~~kg~----~vl~--~~~w-~~------~~~~fD 153 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRW----RLSKKGF----TVLD--IDDW-QQ------TDFKFD 153 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHH----HHHhCCC----eEEe--hhhh-hc------cCCceE
Confidence 567899999999999999998766 7999999998854 4444453 3332 2232 21 146899
Q ss_pred EEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeCcCC-CCcc-------cCCCCCCCccccchHHHHHHHHHHhhcCCC
Q 026547 150 YAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDNTLW-GGTV-------AMSEEQVPDHLRGGRQATLDLNRSLADDPR 218 (237)
Q Consensus 150 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~-~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (237)
+|.+-. .+......++.+++.|+|+|.+++.-++. +..+ ..|.+..+-.-..+-..+..+. .+....+
T Consensus 154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~G 232 (265)
T PF05219_consen 154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAG 232 (265)
T ss_pred EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcC
Confidence 997642 24556789999999999999999987762 2222 1222111111233444556666 4445667
Q ss_pred ceEEe
Q 026547 219 IQLSH 223 (237)
Q Consensus 219 ~~~~~ 223 (237)
|+...
T Consensus 233 F~v~~ 237 (265)
T PF05219_consen 233 FEVER 237 (265)
T ss_pred CEEEE
Confidence 76553
No 212
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.46 E-value=1.9e-06 Score=72.02 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=97.8
Q ss_pred hhhhccCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHH-HhhCCCCCccccHHHHHHHHHHHhh-cCCCEEEEEcccccH
Q 026547 6 KKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDV-TADHPRAMMSTAPDAGQLMAMLLKL-VNAKKTIEIGVFTGY 83 (237)
Q Consensus 6 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~ 83 (237)
..-+...++..-+.+..++... ...+.+..+.+. +-.....+ -++..-+.|...+.. .++-+|+-.||.+|-
T Consensus 55 ~~r~~~~g~~s~~~y~~~L~~~----~~~~e~~~li~~ltineT~FF--Rd~~~f~~L~~~~~~~~~~irIWSAgCStGE 128 (287)
T PRK10611 55 VRRLRSLGLNDFGQYLALLESN----QNSAEWQAFINALTTNLTAFF--REAHHFPILAEHARRRSGEYRVWSAAASTGE 128 (287)
T ss_pred HHHHHHcCCCCHHHHHHHHhcC----CCHHHHHHHHHHhhCCCCCcc--CCcHHHHHHHHHHHhcCCCEEEEEccccCCH
Confidence 3344455566666666666642 223444444433 33333333 244444445443322 234599999999998
Q ss_pred HHHH----HHhhCC---CCCEEEEEeCCchHHHHHHHH------------------HHhc-----C-------CCCcEEE
Q 026547 84 SLLL----TALTIP---EDGQIMAIDVNRETYEIGLPV------------------IKKA-----G-------VDHKINF 126 (237)
Q Consensus 84 ~~~~----la~~~~---~~~~v~~vD~~~~~~~~a~~~------------------~~~~-----~-------~~~~v~~ 126 (237)
-... +....+ ...+|+|+|+++.+++.|++- |... + +...|+|
T Consensus 129 EpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F 208 (287)
T PRK10611 129 EPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDF 208 (287)
T ss_pred HHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEE
Confidence 4332 333222 146899999999999998743 2211 1 2246788
Q ss_pred EeccchHHHHHHhhcCCCCCceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 127 IESEALSVLDQLLKDSENEGSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.+.|..+... +..+.||+||+-. ........++.+.+.|+|||++++..
T Consensus 209 ~~~NL~~~~~------~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 209 QQLNLLAKQW------AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EcccCCCCCC------ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 8888765211 1137899999743 22334678899999999999998853
No 213
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.44 E-value=1.6e-06 Score=72.10 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=79.1
Q ss_pred HHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-----cEEEEeccch
Q 026547 60 QLMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-----KINFIESEAL 132 (237)
Q Consensus 60 ~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~ 132 (237)
.+-+.|++ ..+.+.++++|||-|+-.+-+-++. -+.++|+|+..-.++.|+++.+...... .+.|+.+|..
T Consensus 105 wIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 105 WIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred HHHHHHHHHHhccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 33344554 3466789999999999877766542 4689999999999999998887543222 3788999875
Q ss_pred H-HHHHHhhcCCCCCceeEEEEe---C----CCcCcHHHHHHHHccCCCCeEEEE
Q 026547 133 S-VLDQLLKDSENEGSFDYAFVD---A----DKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 133 ~-~~~~~~~~~~~~~~~D~i~id---~----~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
. .+..+.. +.+.+||+|-+- + ......-.+.++.+.|+|||+++-
T Consensus 183 ~~~l~d~~e--~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 183 KERLMDLLE--FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred hhHHHHhcc--CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 4 2222221 112349999543 1 123345678888899999999985
No 214
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.41 E-value=2.2e-06 Score=68.25 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=70.8
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEE
Q 026547 74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFV 153 (237)
Q Consensus 74 vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~i 153 (237)
|.||||-=|+..+++.+.-. ..+++++|+++..++.|+++++..|+.++++++.+|.++.++.- +..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~-------e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG-------EDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG-------G---EEEE
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC-------CCCCEEEE
Confidence 68999999999999998644 56899999999999999999999999999999999998877531 34788887
Q ss_pred eCC-CcCcHHHHHHHHccCCCCeEEEEe
Q 026547 154 DAD-KVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 154 d~~-~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
.+. .....+.++.....++....+|+.
T Consensus 73 AGMGG~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 73 AGMGGELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp EEE-HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred ecCCHHHHHHHHHhhHHHhccCCeEEEe
Confidence 653 233456666665556555556654
No 215
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.40 E-value=5.1e-06 Score=69.79 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=74.5
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547 59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL 138 (237)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 138 (237)
.+++..| ...++..++|.-+|.|..+..+++.++ +++|+++|.++.+++.+++.++.. .+++++++++..++...+
T Consensus 10 ~Evl~~L-~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 10 DEVVEGL-NIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL 85 (305)
T ss_pred HHHHHhc-CcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence 3444433 345667999999999999999999887 599999999999999999988765 368999999988876555
Q ss_pred hhcCCCCCceeEEEEeCCCcC
Q 026547 139 LKDSENEGSFDYAFVDADKVN 159 (237)
Q Consensus 139 ~~~~~~~~~~D~i~id~~~~~ 159 (237)
.+. +..++|.|++|.+.+.
T Consensus 86 ~~~--~~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 86 DEL--LVTKIDGILVDLGVSS 104 (305)
T ss_pred Hhc--CCCcccEEEEeccCCH
Confidence 322 2367999999866543
No 216
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.39 E-value=4.2e-06 Score=68.85 Aligned_cols=150 Identities=17% Similarity=0.228 Sum_probs=114.4
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--CCC-CcEEEEeccchHHHHHHhhcC
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--GVD-HKINFIESEALSVLDQLLKDS 142 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~-~~v~~~~~d~~~~~~~~~~~~ 142 (237)
.+..++++||-||-|.|......+++ +.-..+.-+|++...++..++++... |.. ++|.++.||...+++...
T Consensus 117 ~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~--- 192 (337)
T KOG1562|consen 117 CSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK--- 192 (337)
T ss_pred ccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc---
Confidence 34668999999999999998888887 44578999999999999999998764 443 689999999999998763
Q ss_pred CCCCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEe-CcCCCCcccCCCCCCCccccchHHHHHHHHHHhh
Q 026547 143 ENEGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYD-NTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLA 214 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (237)
.++||+|++|..... ...+++.+.+.||+||+++.. +..|-- ......+++|-+.+.
T Consensus 193 --~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~-------------~~~i~e~r~~~~~~f 257 (337)
T KOG1562|consen 193 --ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLH-------------LDYIKEGRSFCYVIF 257 (337)
T ss_pred --cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHH-------------HHHHHHHHHhHHHhc
Confidence 489999999865332 346888899999999998873 333311 123455778888887
Q ss_pred cCCCceEEeeecC----CceEEEE
Q 026547 215 DDPRIQLSHVPLG----DGITICW 234 (237)
Q Consensus 215 ~~~~~~~~~lp~~----~Gl~i~~ 234 (237)
..-.+.++..|.. -|+.++.
T Consensus 258 ~~t~ya~ttvPTypsg~igf~l~s 281 (337)
T KOG1562|consen 258 DLTAYAITTVPTYPSGRIGFMLCS 281 (337)
T ss_pred CccceeeecCCCCccceEEEEEec
Confidence 7777788888743 4555554
No 217
>PRK10742 putative methyltransferase; Provisional
Probab=98.39 E-value=3.3e-06 Score=68.53 Aligned_cols=88 Identities=10% Similarity=0.177 Sum_probs=72.0
Q ss_pred HHHHHHHhhcCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc------C--CCCcEEEEec
Q 026547 60 QLMAMLLKLVNAK--KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA------G--VDHKINFIES 129 (237)
Q Consensus 60 ~~l~~l~~~~~~~--~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~--~~~~v~~~~~ 129 (237)
+.|...+...++. +|||+-+|.|..++.++.. +++|+++|.++......+..++.. + +..+++++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4555556666666 8999999999999999874 678999999999999999988875 2 2257999999
Q ss_pred cchHHHHHHhhcCCCCCceeEEEEeCC
Q 026547 130 EALSVLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
|+.+++... ..+||+||+|..
T Consensus 153 da~~~L~~~------~~~fDVVYlDPM 173 (250)
T PRK10742 153 SSLTALTDI------TPRPQVVYLDPM 173 (250)
T ss_pred cHHHHHhhC------CCCCcEEEECCC
Confidence 999998864 358999999964
No 218
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.38 E-value=1.2e-06 Score=71.54 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=78.5
Q ss_pred ccHHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhh---CC-CCCEEEEEeCCc--------------------
Q 026547 54 TAPDAGQLMAMLLKL----VNAKKTIEIGVFTGYSLLLTALT---IP-EDGQIMAIDVNR-------------------- 105 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~---~~-~~~~v~~vD~~~-------------------- 105 (237)
+.......|..++.. .-+..|+|+||..|.+++.++.. +. .+-++++.|--.
T Consensus 54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~ 133 (248)
T PF05711_consen 54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE 133 (248)
T ss_dssp SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence 344444445554442 34679999999999988765432 22 244788988311
Q ss_pred ------hHHHHHHHHHHhcCC-CCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-cCcHHHHHHHHccCCCCeEE
Q 026547 106 ------ETYEIGLPVIKKAGV-DHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-VNYWNYHERLMKLLKVGGIA 177 (237)
Q Consensus 106 ------~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-~~~~~~~~~~~~~L~~gG~l 177 (237)
...+..++++++.|+ .+++++++|...+.++.. +.+++-++.+|++. +.....++.+++.|.|||+|
T Consensus 134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~-----p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDA-----PIERIALLHLDCDLYESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC------TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEE
T ss_pred cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccC-----CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEE
Confidence 124555666666664 468999999999988754 24678888888753 33567888999999999999
Q ss_pred EEeCcCC
Q 026547 178 VYDNTLW 184 (237)
Q Consensus 178 v~~~~~~ 184 (237)
++||..+
T Consensus 209 i~DDY~~ 215 (248)
T PF05711_consen 209 IFDDYGH 215 (248)
T ss_dssp EESSTTT
T ss_pred EEeCCCC
Confidence 9999765
No 219
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.37 E-value=6e-06 Score=70.98 Aligned_cols=111 Identities=19% Similarity=0.216 Sum_probs=88.1
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
..++.+|||..+..|.-|.++|..+...+.|++.|.+...+...+.++.+.|..+ ..+...|..++.... + .++
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~----~-~~~ 312 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKE----F-PGS 312 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccc----c-Ccc
Confidence 3456799999999999999999999878999999999999999999999999865 455666766543221 1 248
Q ss_pred eeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 148 FDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 148 ~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
||-|++|++.+. -.+.+.....++++||+||.+.+..
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 999999976533 1345666668999999999988763
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.37 E-value=2.9e-06 Score=67.54 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=67.2
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-------hcCC-CCcEEEEeccchHH-
Q 026547 64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK-------KAGV-DHKINFIESEALSV- 134 (237)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~v~~~~~d~~~~- 134 (237)
..+.+.+...++|||||.|...+..|...+ ..+.+|||+.+...+.|+...+ ..|. ..++++.++|..+.
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 344566788999999999998887776554 5679999999988877765443 2343 25688999997653
Q ss_pred -HHHHhhcCCCCCceeEEEEeCCC--cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 135 -LDQLLKDSENEGSFDYAFVDADK--VNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 135 -~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
...+ ...-|+||++... +.....+......|++|..||.-..+
T Consensus 115 ~~~~~------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 115 FVKDI------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp HHHHH------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred hHhhh------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 2222 1457899998643 22344456666889998888764433
No 221
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.37 E-value=3.2e-06 Score=79.27 Aligned_cols=99 Identities=11% Similarity=0.141 Sum_probs=76.0
Q ss_pred cccHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhC---C-----------------------------------
Q 026547 53 STAPDAGQLMAMLLKL-VNAKKTIEIGVFTGYSLLLTALTI---P----------------------------------- 93 (237)
Q Consensus 53 ~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~---~----------------------------------- 93 (237)
++.+..+..|..++.. .++..++|-+||+|...+..|... +
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 4566666666677766 456799999999999988765421 1
Q ss_pred ---CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCC
Q 026547 94 ---EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 94 ---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
...+++|+|+++.+++.|++|+..+|+.+.+++.++|+.+..... ..++||+|+.+.+
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP 312 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP 312 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence 123799999999999999999999999888999999987753221 1257999998854
No 222
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.36 E-value=6.4e-06 Score=69.93 Aligned_cols=125 Identities=21% Similarity=0.264 Sum_probs=83.2
Q ss_pred CCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC------CCCCEEEEEeCCchHHHHHHHHHHhcCCCC-
Q 026547 50 AMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTI------PEDGQIMAIDVNRETYEIGLPVIKKAGVDH- 122 (237)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~- 122 (237)
+...++.....+|..++...++.+|+|-+||+|.....+.+.+ .....++|+|+++..+..++-++.-.+...
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 3444667888999999988888899999999999988877643 126799999999999999988876655433
Q ss_pred cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC------------------------cHHHHHHHHccCCCCeEEE
Q 026547 123 KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN------------------------YWNYHERLMKLLKVGGIAV 178 (237)
Q Consensus 123 ~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~------------------------~~~~~~~~~~~L~~gG~lv 178 (237)
...+..+|.+...... ...+||+|+.+.+-.. ...+++.+.+.|++||.++
T Consensus 106 ~~~i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 106 NINIIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp GCEEEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 2468888876542210 1368999997632100 1247788889999999653
Q ss_pred E
Q 026547 179 Y 179 (237)
Q Consensus 179 ~ 179 (237)
+
T Consensus 181 ~ 181 (311)
T PF02384_consen 181 I 181 (311)
T ss_dssp E
T ss_pred E
Confidence 3
No 223
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.31 E-value=1.4e-05 Score=62.96 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=83.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++.+||++|-|.|.....+.++- -.+-+-||.+|+.++..+..- .+-..+|-+..|..++.++.++ ++.|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~--p~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~-----d~~F 170 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP--PDEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP-----DKHF 170 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC--CcceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc-----ccCc
Confidence 688899999999999888777653 357788999999887655531 1223578888999999988874 4679
Q ss_pred eEEEEeCCCcC---cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 149 DYAFVDADKVN---YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 149 D~i~id~~~~~---~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
|-|+-|.-.+. ...+.+-+.++|||+|++-+-|.+-
T Consensus 171 DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 171 DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 99999976444 4567788889999999998877663
No 224
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.31 E-value=6.6e-06 Score=70.55 Aligned_cols=121 Identities=16% Similarity=0.172 Sum_probs=92.7
Q ss_pred cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-------------------------------CC-----
Q 026547 53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE-------------------------------DG----- 96 (237)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-------------------------------~~----- 96 (237)
++....+..|-.++.-.+...++|-=||+|...+..|...+. .+
T Consensus 174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 355666777777777777789999999999999877654421 11
Q ss_pred --EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-------c----CcHHH
Q 026547 97 --QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-------V----NYWNY 163 (237)
Q Consensus 97 --~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~----~~~~~ 163 (237)
.++|+|+++.+++.|+.|.+++|+.+.|+|.++|+.++-+. .+.+|+|+++.+- . .|..+
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~f 326 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREF 326 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHH
Confidence 37899999999999999999999999999999999776432 1689999988531 1 24556
Q ss_pred HHHHHccCCCCeEEEEe
Q 026547 164 HERLMKLLKVGGIAVYD 180 (237)
Q Consensus 164 ~~~~~~~L~~gG~lv~~ 180 (237)
.+.+.+.++..+..|+.
T Consensus 327 g~~lk~~~~~ws~~v~t 343 (381)
T COG0116 327 GRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHhcCCceEEEE
Confidence 66666777777777764
No 225
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.29 E-value=1.2e-06 Score=65.01 Aligned_cols=111 Identities=22% Similarity=0.309 Sum_probs=70.2
Q ss_pred EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeC------CCc------CcHHHH
Q 026547 97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDA------DKV------NYWNYH 164 (237)
Q Consensus 97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~------~~~------~~~~~~ 164 (237)
+|+++|+.+++++.+++.+++.++.++++++...-.++..-+. .+++|+++.+. ++. .....+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 6999999999999999999999998899999887655544331 14899998762 221 135678
Q ss_pred HHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEee
Q 026547 165 ERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHV 224 (237)
Q Consensus 165 ~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 224 (237)
+.+.++|++||+|++. .+.|..... .-..++.+|.+.+. ...|.+...
T Consensus 76 ~~al~lL~~gG~i~iv--~Y~GH~gG~---------eE~~av~~~~~~L~-~~~~~V~~~ 123 (140)
T PF06962_consen 76 EAALELLKPGGIITIV--VYPGHPGGK---------EESEAVEEFLASLD-QKEFNVLKY 123 (140)
T ss_dssp HHHHHHEEEEEEEEEE--E--STCHHH---------HHHHHHHHHHHTS--TTTEEEEEE
T ss_pred HHHHHhhccCCEEEEE--EeCCCCCCH---------HHHHHHHHHHHhCC-cceEEEEEE
Confidence 8888999999999884 455532110 12344556655553 235655443
No 226
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.28 E-value=9e-06 Score=64.66 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=74.0
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
.+.++.+||=+|.++|....+++.-..+.+.|++||.++...+..-...++ .+++-.+.+|+.....-. .--+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~----~lv~ 142 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYR----MLVE 142 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGT----TTS-
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhh----cccc
Confidence 345678999999999999999999888889999999999765544433333 246888999986532211 1147
Q ss_pred ceeEEEEeCCCcCc-HHHHHHHHccCCCCeEEEEe
Q 026547 147 SFDYAFVDADKVNY-WNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 147 ~~D~i~id~~~~~~-~~~~~~~~~~L~~gG~lv~~ 180 (237)
..|+||.|...++- .-+..++...|++||.+++.
T Consensus 143 ~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 143 MVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 99999999765553 44566666899999987763
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.26 E-value=6.5e-06 Score=61.73 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=56.4
Q ss_pred HHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHhcC--CCCcEEEEec
Q 026547 59 GQLMAMLLKL----VNAKKTIEIGVFTGYSLLLTALTI---PEDGQIMAIDVNRETYEIGLPVIKKAG--VDHKINFIES 129 (237)
Q Consensus 59 ~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~ 129 (237)
.+++..++.. .++..|+|+|||.|+.+..++..+ ..+.+|++||.++...+.+++..+..+ ...++++..+
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG 89 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence 3444444444 678899999999999999998822 137899999999999999999988877 4345666666
Q ss_pred cchH
Q 026547 130 EALS 133 (237)
Q Consensus 130 d~~~ 133 (237)
+..+
T Consensus 90 ~~~~ 93 (141)
T PF13679_consen 90 DIAD 93 (141)
T ss_pred chhh
Confidence 5544
No 228
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.24 E-value=1.7e-06 Score=67.62 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=61.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhc-CCCCC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKD-SENEG 146 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~-~~~~~ 146 (237)
++.+|||+||++|.++.++++...+.++|+++|+.+. ... ..+..+++|..+. ...+... .....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence 4579999999999999999998744689999999876 111 2355566664331 1111110 00126
Q ss_pred ceeEEEEeCCCc--------C------cHHHHHHHHccCCCCeEEEEeC
Q 026547 147 SFDYAFVDADKV--------N------YWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 147 ~~D~i~id~~~~--------~------~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
++|+|++|.... . ....+..+.+.|++||.+|+.-
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 999999997210 1 1223444457899999888753
No 229
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.23 E-value=8e-06 Score=67.71 Aligned_cols=133 Identities=11% Similarity=0.050 Sum_probs=87.6
Q ss_pred CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547 48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI 127 (237)
Q Consensus 48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 127 (237)
+..+. +++...+.+...+...++..|||||+|.|..|..++... .+|+++|+++.+.+..++.+. ..++++++
T Consensus 9 gQnFL-~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi 81 (262)
T PF00398_consen 9 GQNFL-VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVI 81 (262)
T ss_dssp TSSEE-EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEE
T ss_pred CcCee-CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceee
Confidence 33443 466666667777777788999999999999999999875 599999999999998888764 34579999
Q ss_pred eccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCC---CCeEEEEeCcCCCCcccCC
Q 026547 128 ESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLK---VGGIAVYDNTLWGGTVAMS 191 (237)
Q Consensus 128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~---~gG~lv~~~~~~~g~~~~~ 191 (237)
.+|+.++..... .......|+.+.+......++..+...-+ ...++++..-.+....+.|
T Consensus 82 ~~D~l~~~~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a~p 144 (262)
T PF00398_consen 82 NGDFLKWDLYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLAKP 144 (262)
T ss_dssp ES-TTTSCGGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHTST
T ss_pred ecchhccccHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccCCC
Confidence 999987532110 01244566665554444566666655222 3456666544333333333
No 230
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.23 E-value=4.5e-06 Score=62.42 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=50.2
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
.+||+|||.|..+.++++..+ ..+|+++|+++.+.+.++++++..+.. ++++++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 389999999999999998876 669999999999999999999988774 47777765543
No 231
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.21 E-value=2.3e-05 Score=64.77 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=72.4
Q ss_pred CCCEEEEEcccccHH----HHHHHhhCCC----CCEEEEEeCCchHHHHHHH-------------------HHHhcC---
Q 026547 70 NAKKTIEIGVFTGYS----LLLTALTIPE----DGQIMAIDVNRETYEIGLP-------------------VIKKAG--- 119 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~----~~~la~~~~~----~~~v~~vD~~~~~~~~a~~-------------------~~~~~~--- 119 (237)
++-+|+-+||++|-- ++.+.+..+. ..+|++.|+|...++.|+. +|.+.+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 367999999999973 3344555542 5689999999999998862 111111
Q ss_pred ------CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 120 ------VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 120 ------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
+...|.|...|..+-.+ . .+.||+|||-. +...-...++.....|+|||++++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~------~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-F------LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-c------cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 11346777777655432 2 47899999753 23334578888889999999999843
No 232
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=3.7e-05 Score=60.71 Aligned_cols=111 Identities=18% Similarity=0.171 Sum_probs=75.5
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHH
Q 026547 59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLD 136 (237)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~ 136 (237)
.++....--..++..|+|+|+..|.++..+++.+..+++|+++|+.|-- . -+.|.++++|+.+ ...
T Consensus 34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~-~~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P-IPGVIFLQGDITDEDTLE 101 (205)
T ss_pred HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c-CCCceEEeeeccCccHHH
Confidence 3333333224467899999999999999999998877889999997632 1 1348889988754 333
Q ss_pred HHhhcCCCCCceeEEEEeCCC--------cCc------HHHHHHHHccCCCCeEEEEeCc
Q 026547 137 QLLKDSENEGSFDYAFVDADK--------VNY------WNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 137 ~~~~~~~~~~~~D~i~id~~~--------~~~------~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
.+... .+..++|+|+.|... .++ ...++.+...|++||.+++...
T Consensus 102 ~l~~~-l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 102 KLLEA-LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHH-cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 33222 223557999998643 111 2334555589999999999754
No 233
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.13 E-value=3.1e-06 Score=66.89 Aligned_cols=106 Identities=20% Similarity=0.200 Sum_probs=63.8
Q ss_pred CCCEEEEEcccccHHHHH----HHhhC----CCCCEEEEEeCCchHHHHHHH------------------HH-HhcC---
Q 026547 70 NAKKTIEIGVFTGYSLLL----TALTI----PEDGQIMAIDVNRETYEIGLP------------------VI-KKAG--- 119 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~----la~~~----~~~~~v~~vD~~~~~~~~a~~------------------~~-~~~~--- 119 (237)
++-+|+-+||++|--+-. +.... +...+|+|+|+|+.+++.|++ ++ ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 556999999999984332 22311 113599999999999999862 22 1111
Q ss_pred -----CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 120 -----VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 120 -----~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+..+|+|.+.|..+..+ ..+.||+|||-..- ..-...++.+.+.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~-------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP-------PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCc-------ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 12468999999888222 24899999986532 2235788888999999999998543
No 234
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.13 E-value=7.9e-06 Score=63.03 Aligned_cols=99 Identities=9% Similarity=0.094 Sum_probs=76.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA 151 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i 151 (237)
+.+.|+|+|+|-.+...+.+ ..+|++||.+|...+.|.+++.-.|. ++++++.+|+.+.- ...-|.|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~---------fe~ADvv 100 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYD---------FENADVV 100 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEeccccccc---------cccccee
Confidence 68999999999998877765 34999999999999999999866665 56999999998862 2567888
Q ss_pred EEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 152 FVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 152 ~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
++.. -.+.....+..+.+.|+.++.++-..+.
T Consensus 101 icEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 101 ICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred HHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence 7531 1122345677777889998888766554
No 235
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.11 E-value=0.00021 Score=60.69 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=81.6
Q ss_pred HHHHHHHHH----HHhh-cCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEE
Q 026547 56 PDAGQLMAM----LLKL-VNAKKTIEIGVFTGYSLLLTALTIPE---DGQIMAIDVNRETYEIGLPVIKKAGVD-HKINF 126 (237)
Q Consensus 56 ~~~~~~l~~----l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~ 126 (237)
+....+|.. ++.. .++..++|+|||+|.-+..++.++.+ ..++++||+|.++++.+.+.+....+. -.+.-
T Consensus 57 r~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~ 136 (319)
T TIGR03439 57 NDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAG 136 (319)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEE
Confidence 444555544 2333 34558999999999988887776632 367999999999999999988733332 13445
Q ss_pred EeccchHHHHHHhhcCCCCCceeEEEEeC-C-----CcCcHHHHHHHHc-cCCCCeEEEE
Q 026547 127 IESEALSVLDQLLKDSENEGSFDYAFVDA-D-----KVNYWNYHERLMK-LLKVGGIAVY 179 (237)
Q Consensus 127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~-~-----~~~~~~~~~~~~~-~L~~gG~lv~ 179 (237)
+++|..+.+..+... .......+++.-+ . ......+++.+.+ .|+|||.+++
T Consensus 137 l~gdy~~~l~~l~~~-~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 137 LLGTYDDGLAWLKRP-ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred EEecHHHHHhhcccc-cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 889887766544211 0113456665543 2 2234578888888 9999988877
No 236
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.08 E-value=2e-05 Score=68.44 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=81.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-cEEEEeccchHHHHHHhhcCCCCCce
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-KINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
++-+|||.=+|+|.=++.++..++...+|+.-|++++..+..++|++.+++.+ ++++.+.|+...+... ...|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~------~~~f 122 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR------QERF 122 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS------TT-E
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc------cccC
Confidence 34589999999999999888876545799999999999999999999999987 7999999998877422 4899
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
|+|=+|..- ....|++.+.+.++.||+|.+...
T Consensus 123 D~IDlDPfG-Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 123 DVIDLDPFG-SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEEEE--SS---HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CEEEeCCCC-CccHhHHHHHHHhhcCCEEEEecc
Confidence 999888643 346899999999999999998554
No 237
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.04 E-value=3.5e-05 Score=70.18 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=64.3
Q ss_pred ccHHHHHHHHHHHhhc-------CCCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchHHHHHHHHHHhcC
Q 026547 54 TAPDAGQLMAMLLKLV-------NAKKTIEIGVFTGYSLLLTALTIPE-------DGQIMAIDVNRETYEIGLPVIKKAG 119 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~~-------~~~~vLeiG~G~G~~~~~la~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~~~ 119 (237)
+.+...++|..++... ...+|||.|||+|...+.++..++. ...++++|+++..+..++.++...+
T Consensus 8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 3455555555444211 3468999999999999888776531 2578999999999999999987766
Q ss_pred CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeC
Q 026547 120 VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDA 155 (237)
Q Consensus 120 ~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~ 155 (237)
. ..+.+..+|.......... ...+.||+|+.+.
T Consensus 88 ~-~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNP 120 (524)
T TIGR02987 88 L-LEINVINFNSLSYVLLNIE--SYLDLFDIVITNP 120 (524)
T ss_pred C-CCceeeecccccccccccc--cccCcccEEEeCC
Confidence 2 2245566654432111100 1136899998763
No 238
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.03 E-value=0.00011 Score=61.02 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=74.3
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
...+....||.--|.|+.+..++..++..++++++|.+|.+++.|++.+...+ +++++++++..+....+... +..
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~ 95 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIG 95 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCC
Confidence 34456799999999999999999999878899999999999999999998766 68999999987766655433 247
Q ss_pred ceeEEEEeCCCcC
Q 026547 147 SFDYAFVDADKVN 159 (237)
Q Consensus 147 ~~D~i~id~~~~~ 159 (237)
++|-|++|.+.+.
T Consensus 96 ~vDGiL~DLGVSS 108 (314)
T COG0275 96 KVDGILLDLGVSS 108 (314)
T ss_pred ceeEEEEeccCCc
Confidence 9999999866554
No 239
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.01 E-value=8.4e-05 Score=58.95 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=85.4
Q ss_pred HHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547 60 QLMAMLLKL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL 138 (237)
Q Consensus 60 ~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 138 (237)
..|..++.. .++.++.||||--+|.++++.+..+ ...+++.|+++..++.|.+++.+.++.+++++..+|.+..+..
T Consensus 5 ~RL~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~- 82 (226)
T COG2384 5 KRLTTVANLVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL- 82 (226)
T ss_pred HHHHHHHHHHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-
Confidence 345555553 3445699999999999999999876 7899999999999999999999999999999999998665432
Q ss_pred hhcCCCCCceeEEEEeCCC-cCcHHHHHHHHccCCCCeEEEE
Q 026547 139 LKDSENEGSFDYAFVDADK-VNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 139 ~~~~~~~~~~D~i~id~~~-~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
.+.+|.|++.+.- ....+++++-...|+.-=.+|+
T Consensus 83 ------~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 83 ------EDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred ------cCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEE
Confidence 3689999887643 3345667776666654333443
No 240
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.01 E-value=4.8e-05 Score=59.47 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=78.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC------CCcEEEEeccchHHHHHHhhcCC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV------DHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
..-.+.|||||.|.....++..+| +.-+.|+|+--...++.++.++..+. -.++.+...++..+++.+-..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k-- 136 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK-- 136 (249)
T ss_pred ccceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh--
Confidence 445799999999999999999988 78899999999999999988887652 246889999999999887433
Q ss_pred CCCceeEEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEE
Q 026547 144 NEGSFDYAFVDADKVN-----------YWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~ 179 (237)
++..-.|+--...+ ...++.+..=+|++||.+..
T Consensus 137 --gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 137 --GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred --cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 44443333211111 23566666678999998765
No 241
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.00 E-value=4.8e-05 Score=64.31 Aligned_cols=95 Identities=14% Similarity=0.143 Sum_probs=73.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
-...+|+|.|.|..+..+...+| +|-+++.+...+..++.++. .| |+.+-||.++-. .+-|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~----------P~~da 239 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT----------PKGDA 239 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccC----------CCcCe
Confidence 36899999999999999988776 68899999988888888775 44 777888876653 34458
Q ss_pred EEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 151 AFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 151 i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
||+-.. -.+..+++++|++.|+|||.|++-+..
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 886432 233568999999999999877665443
No 242
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.96 E-value=7.1e-05 Score=59.06 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=63.8
Q ss_pred CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547 48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI 127 (237)
Q Consensus 48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 127 (237)
.||.- | ...++..+....+...|.|+|||.+..+..+ +..-+|++.|+-.. .+ .+.
T Consensus 54 ~WP~n---P-vd~iI~~l~~~~~~~viaD~GCGdA~la~~~----~~~~~V~SfDLva~--------------n~--~Vt 109 (219)
T PF05148_consen 54 KWPVN---P-VDVIIEWLKKRPKSLVIADFGCGDAKLAKAV----PNKHKVHSFDLVAP--------------NP--RVT 109 (219)
T ss_dssp TSSS----H-HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------ST--TEE
T ss_pred cCCCC---c-HHHHHHHHHhcCCCEEEEECCCchHHHHHhc----ccCceEEEeeccCC--------------CC--CEE
Confidence 56643 2 3445555555555679999999999877443 33457999998642 12 356
Q ss_pred eccchHHHHHHhhcCCCCCceeEEEEeC--CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 128 ESEALSVLDQLLKDSENEGSFDYAFVDA--DKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
.+|..... + .+++.|++++.. ...++..++++..|.|++||.+.+..+.
T Consensus 110 acdia~vP--L-----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 110 ACDIANVP--L-----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp ES-TTS-S---------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EecCccCc--C-----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec
Confidence 67774432 1 258999997653 3568899999999999999999998775
No 243
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.92 E-value=0.00012 Score=61.17 Aligned_cols=106 Identities=8% Similarity=0.075 Sum_probs=67.0
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.+|.+|||+|||.|..+..+...++.-.+++++|.++.+.+.++..++.......... ..+ ..... ....+.
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~---~~~~~----~~~~~~ 103 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRV---LYRDF----LPFPPD 103 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhh---hhccc----ccCCCC
Confidence 5788999999999987766666666456899999999999999998765432111111 111 11100 012445
Q ss_pred eEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 149 DYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 149 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
|+|++... ......+++.++..+.+ -+|++....
T Consensus 104 DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt 142 (274)
T PF09243_consen 104 DLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGT 142 (274)
T ss_pred cEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCC
Confidence 99986532 23345678888877766 455555444
No 244
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=97.91 E-value=0.00017 Score=55.87 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=83.0
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
++.....+..|.-..+|..|+|+|+-.|.+++++|..+ +...+|.++|++-...+-+... .++|.|+.++.
T Consensus 54 ~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss 127 (237)
T COG3510 54 SPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSS 127 (237)
T ss_pred CHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCC
Confidence 45555666677777899999999999999999988644 2346899999986654322211 25799999987
Q ss_pred hHHHHHHhhcCCCCCceeEE--EEeCCC--cCcHHHHHHHHccCCCCeEEEEeCcCCCCcc
Q 026547 132 LSVLDQLLKDSENEGSFDYA--FVDADK--VNYWNYHERLMKLLKVGGIAVYDNTLWGGTV 188 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~D~i--~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~ 188 (237)
.+.....+.+- -...|--| +.|.++ .+...-++...++|.-|-.+++.|....+..
T Consensus 128 ~dpai~eqi~~-~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 128 TDPAIAEQIRR-LKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred CCHHHHHHHHH-HhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 66322211110 01222234 345443 3345666777799999999999887765543
No 245
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.86 E-value=7.5e-05 Score=62.80 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547 60 QLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL 139 (237)
Q Consensus 60 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 139 (237)
+.+..|. ..++..+||.--|.|+.+..++..++ +++|+|+|.++++++.+++.+... .+++.+++++..++...+.
T Consensus 11 Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 11 EVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp HHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred HHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence 3343333 55677999999999999999999998 599999999999999999877644 5789999999877655553
Q ss_pred hcCCCCCceeEEEEeCCCcC
Q 026547 140 KDSENEGSFDYAFVDADKVN 159 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~~~~ 159 (237)
.. ....++|.|++|.+.+.
T Consensus 87 ~~-~~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 87 EL-NGINKVDGILFDLGVSS 105 (310)
T ss_dssp HT-TTTS-EEEEEEE-S--H
T ss_pred Hc-cCCCccCEEEEccccCH
Confidence 32 12468999999976554
No 246
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.86 E-value=0.0018 Score=52.35 Aligned_cols=133 Identities=20% Similarity=0.208 Sum_probs=75.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
..+++||=+|=..-.+ +.++.... ..+|+.+|+++..++..++..++.|+. ++.++.|..+.+|.- -.++|
T Consensus 43 L~gk~il~lGDDDLtS-lA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~-----~~~~f 113 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTS-LALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEE-----LRGKF 113 (243)
T ss_dssp STT-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TT-----TSS-B
T ss_pred ccCCEEEEEcCCcHHH-HHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHH-----HhcCC
Confidence 3688999999766554 33333222 469999999999999999999999985 999999999988753 25899
Q ss_pred eEEEEeCCC--cCcHHHHHHHHccCCCCe-EEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeee
Q 026547 149 DYAFVDADK--VNYWNYHERLMKLLKVGG-IAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVP 225 (237)
Q Consensus 149 D~i~id~~~--~~~~~~~~~~~~~L~~gG-~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 225 (237)
|++|.|.+. ....-|+.+....|+..| ...+.=.. .+ .....+.++++.+.+..-+-..++|
T Consensus 114 D~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~------~~---------~s~~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 114 DVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTH------KE---------ASPDKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp SEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-T------TT-----------HHHHHHHHHHHHTS--EEEEEEE
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEec------Cc---------CcHHHHHHHHHHHHHCCcCHHHHHh
Confidence 999999753 335568888888888766 33332111 00 1124466777777754444444554
No 247
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00024 Score=55.64 Aligned_cols=116 Identities=19% Similarity=0.167 Sum_probs=81.2
Q ss_pred HHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 56 PDAGQLMAMLL--KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 56 ~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
.-.+.+|.-|- .+.++.+||=+|..+|....+++.-.+ ++.+++||.++......-...++ .+++-.+.+|+..
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~ 135 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARK 135 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCC
Confidence 33344444333 355778999999999999999999887 89999999999876554444433 3467788888855
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCCcCcH-HHHHHHHccCCCCeEEEE
Q 026547 134 VLDQLLKDSENEGSFDYAFVDADKVNYW-NYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~ 179 (237)
...-. .--+..|+|+.|...++-. -+..++...|++||.+++
T Consensus 136 P~~Y~----~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 136 PEKYR----HLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred cHHhh----hhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 32211 1147899999997655543 455666789999994443
No 248
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.82 E-value=4.8e-05 Score=66.87 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=88.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
.+..+|-+|-|.|....++-..+| ..++++++++|++++.|+.++....- .+.++...|..+++....+.-.....||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCc
Confidence 456889999999999988888877 78999999999999999999854432 2567777888888887765322367899
Q ss_pred EEEEeCCCcC------------cHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 150 YAFVDADKVN------------YWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 150 ~i~id~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
++++|.+... ...++..+...|.|.|+++++-+....
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 9999854322 234566677899999999998776533
No 249
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.79 E-value=0.00019 Score=60.99 Aligned_cols=87 Identities=10% Similarity=0.132 Sum_probs=63.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++.++||+||++|.+|..+++. +.+|++||..+ +. ..+.. .++|..+.+|...+.+. ...+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~----~~L~~---~~~V~h~~~d~fr~~p~-------~~~v 271 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MA----QSLMD---TGQVEHLRADGFKFRPP-------RKNV 271 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cC----HhhhC---CCCEEEEeccCcccCCC-------CCCC
Confidence 46789999999999999999985 66999999544 21 12222 35799999998776542 3789
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCC
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVG 174 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~g 174 (237)
|.+++|... ......+.+.+.|..|
T Consensus 272 DwvVcDmve-~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 272 DWLVCDMVE-KPARVAELMAQWLVNG 296 (357)
T ss_pred CEEEEeccc-CHHHHHHHHHHHHhcC
Confidence 999999753 3345566666777665
No 250
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.69 E-value=0.0006 Score=50.32 Aligned_cols=104 Identities=21% Similarity=0.205 Sum_probs=67.4
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH-HHHHhhcCCCC-CceeEE
Q 026547 74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV-LDQLLKDSENE-GSFDYA 151 (237)
Q Consensus 74 vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~-~~~D~i 151 (237)
++|+|||.|..+ .++...+....++++|+++.++..++..... .....+.+..++.... ++ ... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLP------FEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCC------CCCCCceeEE
Confidence 999999999977 4444333224899999999998885544432 2111157777776542 21 112 379999
Q ss_pred EEeCCCcC--cHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547 152 FVDADKVN--YWNYHERLMKLLKVGGIAVYDNTLWG 185 (237)
Q Consensus 152 ~id~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~ 185 (237)
........ ....+..+.+.++++|.+++......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 33322111 36788889999999999988766543
No 251
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.64 E-value=6.3e-05 Score=59.96 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=72.6
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
-..++||||+.|+...++.... -.+++-+|.+..|++.++..- ..++ .+..+.+|- ++++ +...++|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DE-E~Ld------f~ens~DL 140 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDE-EFLD------FKENSVDL 140 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CCce--EEEEEecch-hccc------ccccchhh
Confidence 3479999999999988876532 358999999999999887742 1121 244566664 3333 33689999
Q ss_pred EEEe---CCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 151 AFVD---ADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 151 i~id---~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
|+.. ++..+.+..+.+|...|||+|+++..
T Consensus 141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 9754 45677889999999999999998763
No 252
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.0004 Score=51.64 Aligned_cols=123 Identities=12% Similarity=0.043 Sum_probs=88.0
Q ss_pred CCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE
Q 026547 47 HPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF 126 (237)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 126 (237)
..+|+.+.+.++-+-...++..++..+.+|+|+|.|...+..++... -.-+|+|++|-.+.++|-..=+.|...+..|
T Consensus 49 ~cvPYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf 126 (199)
T KOG4058|consen 49 LCVPYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRF 126 (199)
T ss_pred ecccccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhcccchhh
Confidence 34454443444444444555566668999999999999888887531 3578999999999999887777788877888
Q ss_pred EeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 127 IESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
..-|...+- ...|..+.+.+..+-++..-.++...+..+..++..
T Consensus 127 ~RkdlwK~d---------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 127 RRKDLWKVD---------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred hhhhhhhcc---------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 877765441 367777777776666666777777677788777654
No 253
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.60 E-value=0.00053 Score=64.27 Aligned_cols=104 Identities=20% Similarity=0.154 Sum_probs=71.1
Q ss_pred CCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCchHH--------------HHHHHHHHhc-----CC
Q 026547 71 AKKTIEIGVFTGYSLLLTALTI-------PE----DGQIMAIDVNRETY--------------EIGLPVIKKA-----GV 120 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~-------~~----~~~v~~vD~~~~~~--------------~~a~~~~~~~-----~~ 120 (237)
.-+|+|+|-|+|++.+...+.. ++ ..+++++|..|-.. ..+++..+.+ |+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999877655433 21 24899999765222 2222222221 21
Q ss_pred ------CC--cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc------CcHHHHHHHHccCCCCeEEEEe
Q 026547 121 ------DH--KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV------NYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 121 ------~~--~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
.+ +++++.||+.+.++.+ ...+|.+|+|+-.+ ...++|..+.+++++||+++.-
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 12 3457889999998876 35799999997432 2468999999999999999854
No 254
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.57 E-value=8.5e-05 Score=65.60 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=57.6
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-hcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK-KAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
-+.+||+|||+|..+.+|... +..+.++-+.... .++..|+ +.|+..-+.++ +.+-+ +++...||
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~--~~qvqfaleRGvpa~~~~~---~s~rL------Pfp~~~fD 183 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEH--EAQVQFALERGVPAMIGVL---GSQRL------PFPSNAFD 183 (506)
T ss_pred eEEEEeccceeehhHHHHhhC---CceEEEcccccCC--chhhhhhhhcCcchhhhhh---ccccc------cCCccchh
Confidence 358999999999999999863 4444444443222 2222222 34543211111 11222 24578999
Q ss_pred EEEEeC----CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 150 YAFVDA----DKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 150 ~i~id~----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+|.+.. +..+-.-++-++-|+|+|||+++.+..-
T Consensus 184 mvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 184 MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence 997642 2222223566677999999999987543
No 255
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.54 E-value=0.00092 Score=54.37 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547 58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ 137 (237)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 137 (237)
...++..+-.......|.|+|||-+.++. . ..-.|+++|+-+- +-+++.+|..+. |-
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a~----------------~~~V~~cDm~~v-Pl 224 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVAV----------------NERVIACDMRNV-PL 224 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeecC----------------CCceeeccccCC-cC
Confidence 44556666666666789999999998765 1 2347999997431 235677887773 21
Q ss_pred HhhcCCCCCceeEEEEeC--CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 138 LLKDSENEGSFDYAFVDA--DKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 138 ~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
.+++.|+++... ...++..++.++.+.|++||.+-+..+.
T Consensus 225 ------~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 225 ------EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred ------ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 258999987543 3567889999999999999999998775
No 256
>PHA01634 hypothetical protein
Probab=97.53 E-value=0.00033 Score=50.71 Aligned_cols=74 Identities=12% Similarity=0.030 Sum_probs=55.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
++++|+|||.+.|.++++++..- ..+|+++|+++...+..+++++...+-++.... + .++. .-++||
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~----eW~~------~Y~~~D 94 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G----EWNG------EYEDVD 94 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c----cccc------cCCCcc
Confidence 67899999999999999998753 358999999999999999988766543322211 1 1221 148999
Q ss_pred EEEEeCC
Q 026547 150 YAFVDAD 156 (237)
Q Consensus 150 ~i~id~~ 156 (237)
+..+|+.
T Consensus 95 i~~iDCe 101 (156)
T PHA01634 95 IFVMDCE 101 (156)
T ss_pred eEEEEcc
Confidence 9999974
No 257
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.53 E-value=0.00027 Score=55.08 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=58.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
..++++|||+|+|+|..++..++.. ...|++.|+.|.....++-|.+.+|. .+.+...|.... +..
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g~----------~~~ 142 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIGS----------PPA 142 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccCC----------Ccc
Confidence 4467899999999999998887753 35899999999999999999888886 367777765431 588
Q ss_pred eeEEEEe
Q 026547 148 FDYAFVD 154 (237)
Q Consensus 148 ~D~i~id 154 (237)
||+++..
T Consensus 143 ~Dl~Lag 149 (218)
T COG3897 143 FDLLLAG 149 (218)
T ss_pred eeEEEee
Confidence 9999764
No 258
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.52 E-value=0.0036 Score=51.60 Aligned_cols=170 Identities=10% Similarity=0.099 Sum_probs=88.8
Q ss_pred cCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHH----HHhhcCCCEEEEEcccccH--H
Q 026547 11 SKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAM----LLKLVNAKKTIEIGVFTGY--S 84 (237)
Q Consensus 11 ~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----l~~~~~~~~vLeiG~G~G~--~ 84 (237)
....+...++++|+..-. ...+.=.++-+...+.-.....+....-.+|.. ++....-+.+||||||--. +
T Consensus 8 D~~~P~~ARvYDy~LGGk---dnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~n 84 (267)
T PF04672_consen 8 DTDRPSPARVYDYLLGGK---DNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGN 84 (267)
T ss_dssp -TTS--HHHHHHHHCT-S---S--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-
T ss_pred CCCCCcHHHHHHHHhCCc---cCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCC
Confidence 456677889999998621 111222222222222111222223333444444 3333466799999998654 4
Q ss_pred HHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh---hcC--CCCCceeEEEEe-----
Q 026547 85 LLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL---KDS--ENEGSFDYAFVD----- 154 (237)
Q Consensus 85 ~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~--~~~~~~D~i~id----- 154 (237)
+-.+|+...++++|+-+|.+|-.+..++..+..... .+..++++|..+.-.-+. ... ....+.-++++.
T Consensus 85 vHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v 163 (267)
T PF04672_consen 85 VHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFV 163 (267)
T ss_dssp HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS
T ss_pred HhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccC
Confidence 556777666699999999999999999999876542 348899999877443331 100 002333344432
Q ss_pred CCCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 155 ADKVNYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
.+.......+..+...|.||..|+++....
T Consensus 164 ~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 164 PDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp -CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 123456789999999999999999987653
No 259
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00029 Score=56.60 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=76.5
Q ss_pred ccHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-c
Q 026547 54 TAPDAGQLMAMLLK---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-S 129 (237)
Q Consensus 54 ~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~ 129 (237)
+++...++...+-. ..+++.+||||+.+|..|..+++.- ..+|+++|.....+.+- + ..+++|..+. .
T Consensus 60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---L---R~d~rV~~~E~t 131 (245)
T COG1189 60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---L---RNDPRVIVLERT 131 (245)
T ss_pred cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---H---hcCCcEEEEecC
Confidence 45555555544433 3467899999999999999988752 35999999876544331 1 1235666554 4
Q ss_pred cchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 130 EALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
|+...-+.. + .+..|++++|..--.....+..+..++++++.++.
T Consensus 132 N~r~l~~~~----~-~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 132 NVRYLTPED----F-TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred ChhhCCHHH----c-ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 555443332 1 35889999998766667788888899999886654
No 260
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.49 E-value=0.00031 Score=60.70 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=81.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++..++++|||.|....+++.. ....+++++.++.-+..+.......++.++..+..++..+.. +.+..|
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-------fedn~f 179 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-------FEDNTF 179 (364)
T ss_pred cccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-------CCcccc
Confidence 34557999999999999999875 367899999999888888877777777776666666654432 346889
Q ss_pred eEEEE-eC--CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 149 DYAFV-DA--DKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 149 D~i~i-d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
|.+.+ +. ..+.....++++.+.++|||+.++-...
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 99854 32 3456678999999999999999986553
No 261
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00011 Score=64.65 Aligned_cols=115 Identities=18% Similarity=0.151 Sum_probs=94.2
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547 64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
.+....++-+|||.=|++|.-++.+|+.++.-.+|++-|.++..++..+++.+.++..+.++..+.|+.-.+-....
T Consensus 103 ~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~--- 179 (525)
T KOG1253|consen 103 LLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPM--- 179 (525)
T ss_pred hhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccc---
Confidence 34455667799999999999999999999855789999999999999999999988888899999999776654321
Q ss_pred CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
....||+|=+|..-. ...|++...+.++.||++++...
T Consensus 180 ~~~~FDvIDLDPyGs-~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 180 VAKFFDVIDLDPYGS-PSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred cccccceEecCCCCC-ccHHHHHHHHHhhcCCEEEEEec
Confidence 137899998885432 35789999999999999998544
No 262
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.45 E-value=0.00035 Score=58.51 Aligned_cols=81 Identities=12% Similarity=0.306 Sum_probs=48.6
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-CCCCcEEEEeccch-HHHHHHhhcCCCCCcee
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-GVDHKINFIESEAL-SVLDQLLKDSENEGSFD 149 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~-~~~~~~~~~~~~~~~~D 149 (237)
-++||||||....=--|+.... +-+++|.|+++..++.|+++++.+ ++.++|+++..... ..+..+.. ..+.||
T Consensus 104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~d 179 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERFD 179 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-EE
T ss_pred eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccceee
Confidence 4799999977653222222222 569999999999999999999999 89999999765322 23332221 146899
Q ss_pred EEEEeCC
Q 026547 150 YAFVDAD 156 (237)
Q Consensus 150 ~i~id~~ 156 (237)
+.+++.+
T Consensus 180 ftmCNPP 186 (299)
T PF05971_consen 180 FTMCNPP 186 (299)
T ss_dssp EEEE---
T ss_pred EEecCCc
Confidence 9998743
No 263
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.45 E-value=0.001 Score=55.08 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=71.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh---cC----------------------------
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK---AG---------------------------- 119 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~~---------------------------- 119 (237)
+.+||--|||.|.++..+|.. +-.+.+.|.|--|+-..+=.+.. .+
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 469999999999999999985 67999999998876433322211 00
Q ss_pred --------CCCcEEEEeccchHHHHHHhhcCCCCCceeEE----EEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 120 --------VDHKINFIESEALSVLDQLLKDSENEGSFDYA----FVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 120 --------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i----~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
...++.+..||..+.-..- ...++||+| |+|. ..+..++++.+.++|||||+-|=-..+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~----~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~lLkpgG~WIN~GPL 204 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPD----ENKGSFDVVVTCFFIDT-AENIIEYIETIEHLLKPGGYWINFGPL 204 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCc----ccCCcccEEEEEEEeec-hHHHHHHHHHHHHHhccCCEEEecCCc
Confidence 0124556667666653221 013689988 3555 567889999999999999976544443
No 264
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.43 E-value=0.0016 Score=54.74 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=72.8
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
+....+.+||-+|+|. |..+...|+++. ..+|+.+|+++..++.|++ + |...-...-+.+..+.+....+...+
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcc
Confidence 3455678999999996 778888999987 7899999999999999998 4 54321111222222333333222222
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
...+|+.|--. .....++.....++.||.+++..
T Consensus 240 ~~~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 240 KKQPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred ccCCCeEEEcc---CchHHHHHHHHHhccCCEEEEec
Confidence 34588887432 33456777789999999977765
No 265
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0025 Score=54.44 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=84.1
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
+.+|+|.=+|+|.=++.++...+ ..+|+.=|++|+..+.+++|++.+... ....+..|+...+... ...||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~~fd~ 124 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HRAFDV 124 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CCCccE
Confidence 88999999999999999988776 449999999999999999999887333 3566669998888764 478999
Q ss_pred EEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 151 AFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 151 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
|=+|.-- ...+|++...+.++.||++.+...
T Consensus 125 IDiDPFG-SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 125 IDIDPFG-SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred EecCCCC-CCchHHHHHHHHhhcCCEEEEEec
Confidence 8776533 346799999999999999988543
No 266
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.37 E-value=0.00041 Score=56.03 Aligned_cols=85 Identities=19% Similarity=0.233 Sum_probs=52.1
Q ss_pred HHHHHhhcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc---CC-----CCcEEEEeccc
Q 026547 62 MAMLLKLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA---GV-----DHKINFIESEA 131 (237)
Q Consensus 62 l~~l~~~~~~--~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~-----~~~v~~~~~d~ 131 (237)
|...+...++ .+|||+-+|-|.-++-++.. +++|+++|.+|-.....+.-++.+ .. ..+++++++|+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 4444444444 38999999999999888863 579999999997765555444332 11 14799999999
Q ss_pred hHHHHHHhhcCCCCCceeEEEEeC
Q 026547 132 LSVLDQLLKDSENEGSFDYAFVDA 155 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~D~i~id~ 155 (237)
.+++... ..+||+|++|.
T Consensus 142 ~~~L~~~------~~s~DVVY~DP 159 (234)
T PF04445_consen 142 LEYLRQP------DNSFDVVYFDP 159 (234)
T ss_dssp CCHCCCH------SS--SEEEE--
T ss_pred HHHHhhc------CCCCCEEEECC
Confidence 9988722 48999999985
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.34 E-value=0.0022 Score=54.66 Aligned_cols=98 Identities=19% Similarity=0.180 Sum_probs=70.3
Q ss_pred HhhcCCCEEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547 66 LKLVNAKKTIEIGVFTGY--SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~--~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
+...++++|+-+|+| |. .++.+|+++. ++|+++|.+++..+.|++. |- ..++...-.+..+..
T Consensus 162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~----- 226 (339)
T COG1064 162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV----- 226 (339)
T ss_pred cCCCCCCEEEEECCc-HHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh-----
Confidence 456678899999888 55 6777888764 8999999999999888875 32 344443333454444
Q ss_pred CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
.+.+|+|+.... ...++...+.|++||.+++-...
T Consensus 227 -~~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 227 -KEIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -HhhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 245999976654 45567777999999999886654
No 268
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00071 Score=51.17 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=67.2
Q ss_pred hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC--CcEEEEeccchHHHHHHhhcCCC
Q 026547 68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD--HKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 68 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
...+++|||+|.|. |..++.+|...+ ...|...|-+.+.++..++....+-.. .++.+..-+ ..-....++
T Consensus 27 ~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~--~~~aqsq~e--- 100 (201)
T KOG3201|consen 27 KIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL--IWGAQSQQE--- 100 (201)
T ss_pred HHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH--HhhhHHHHh---
Confidence 34568999999874 556777887776 789999999999998888765433111 112111111 111111111
Q ss_pred CCceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 145 EGSFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 145 ~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
...||+|++.. -.+......+.++.+|+|.|..++-
T Consensus 101 q~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred hCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 36899997532 1233456788888999999986654
No 269
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.27 E-value=0.00059 Score=53.15 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=69.2
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHH------HHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547 65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETY------EIGLPVIKKAGVDHKINFIESEALSVLDQL 138 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~------~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 138 (237)
++...++.+|+|+-.|.|++|.-++.++.+.+.|+++-..+... ...+...++.... +++.+-.+.....
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~--- 118 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG--- 118 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC---
Confidence 45667888999999999999999999988788999987654311 1111222222222 2333332222221
Q ss_pred hhcCCCCCceeEEEEeC----------CCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 139 LKDSENEGSFDYAFVDA----------DKVNYWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 139 ~~~~~~~~~~D~i~id~----------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
..+..|+++... .......++..+.+.|||||++++.+...
T Consensus 119 -----~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 119 -----APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred -----CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 135666665421 12224578888999999999999877653
No 270
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.26 E-value=0.0017 Score=52.86 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 57 DAGQLMAMLLKL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 57 ~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
....++..+... ..+.+|+|||||.--.++.+....+ +..++++|++..+++.....+...+.. .++...|...-.
T Consensus 91 ~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 91 NLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP 167 (251)
T ss_dssp GHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH
T ss_pred hHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC
Confidence 345555555543 3488999999988888776654433 679999999999999999999998864 555555654432
Q ss_pred HHHhhcCCCCCceeEEEEe
Q 026547 136 DQLLKDSENEGSFDYAFVD 154 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id 154 (237)
+....|+.++-
T Consensus 168 --------~~~~~DlaLll 178 (251)
T PF07091_consen 168 --------PKEPADLALLL 178 (251)
T ss_dssp --------TTSEESEEEEE
T ss_pred --------CCCCcchhhHH
Confidence 24789999875
No 271
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.08 E-value=0.0014 Score=57.11 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=51.4
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
.|||||+|+|..++..+++.. -.|+++|.-..|.+.|++...++|.+++|+++.-.+.+
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 689999999999998888754 46999999999999999999999999999988755433
No 272
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.05 E-value=0.0052 Score=49.56 Aligned_cols=106 Identities=18% Similarity=0.133 Sum_probs=72.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
+.++.+||=+|.++|++..+.+.-..+.+.|++||.++..-... +..+.-..+|-.+..|+...-.-- ---.-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL---~nmAkkRtNiiPIiEDArhP~KYR----mlVgm 226 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDL---INMAKKRTNIIPIIEDARHPAKYR----MLVGM 226 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHH---HHHhhccCCceeeeccCCCchhee----eeeee
Confidence 55778999999999999999999888899999999988553322 222222346778888886532110 00256
Q ss_pred eeEEEEeCCCcCcHHHH-HHHHccCCCCeEEEEe
Q 026547 148 FDYAFVDADKVNYWNYH-ERLMKLLKVGGIAVYD 180 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~ 180 (237)
.|+||.|...+.....+ -+..-.|++||-+++.
T Consensus 227 VDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 227 VDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 89999987655533332 2333689999977763
No 273
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0015 Score=55.37 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=66.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
..|.+|||+|.|.|.....+-..+|.-..++-+|.++..-+..-...+..... +......|...-...+. ..+.|
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~-~td~r~s~vt~dRl~lp----~ad~y 186 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE-KTDWRASDVTEDRLSLP----AADLY 186 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc-cCCCCCCccchhccCCC----cccee
Confidence 35778999999999876666555664456788888886655554443333321 22222333322211221 23778
Q ss_pred eEEEEeC------CCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 149 DYAFVDA------DKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 149 D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+++++.. .......+++.+|.++.|||.||+-
T Consensus 187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 9887532 2222445899999999999999874
No 274
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.0066 Score=51.91 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=78.8
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh-hc
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL-KD 141 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~ 141 (237)
....++.+|||++...|.-++.+.+++- ..+.|++=|.++..+...+..+..... +...+...++..+-.... ..
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 3466788999999999999988877663 245899999999888887777755443 334444444432211110 00
Q ss_pred -CCCCCceeEEEEeCCCcC--------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547 142 -SENEGSFDYAFVDADKVN--------------------------YWNYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 142 -~~~~~~~D~i~id~~~~~--------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
+.....||-|++|...+. -...+.+..++|++||.+|.+.+..
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 012468999999854211 0245666678999999999998864
No 275
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.93 E-value=0.0019 Score=54.63 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=75.2
Q ss_pred CCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHH-------HHHHHHHhcCCC
Q 026547 49 RAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYE-------IGLPVIKKAGVD 121 (237)
Q Consensus 49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~-------~a~~~~~~~~~~ 121 (237)
.+...++++..-+++.++...+++.|.|--.|+|......|.- ++-|+|.|++-.++. ..+.+++++|..
T Consensus 187 iGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~ 263 (421)
T KOG2671|consen 187 IGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS 263 (421)
T ss_pred cCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc
Confidence 4445667788888888999999999999999999987766653 679999999887765 567899999965
Q ss_pred C-cEEEEeccchHHHHHHhhcCCCCCceeEEEEeC
Q 026547 122 H-KINFIESEALSVLDQLLKDSENEGSFDYAFVDA 155 (237)
Q Consensus 122 ~-~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~ 155 (237)
+ -+.++.+|.......- ...||.|++|.
T Consensus 264 ~~fldvl~~D~sn~~~rs------n~~fDaIvcDP 292 (421)
T KOG2671|consen 264 SQFLDVLTADFSNPPLRS------NLKFDAIVCDP 292 (421)
T ss_pred chhhheeeecccCcchhh------cceeeEEEeCC
Confidence 3 4567788865532211 47899999983
No 276
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.92 E-value=0.00064 Score=55.88 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=64.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC----------------C-----------C
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV----------------D-----------H 122 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----------------~-----------~ 122 (237)
++.++||||||.-..-+ ..+.+.-.+|++.|..+...+..+++++..+- . .
T Consensus 56 ~g~~llDiGsGPtiy~~--lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQL--LSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGG--TTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhh--hhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46689999998854322 22212234899999999988888877765431 0 0
Q ss_pred cE-EEEeccchHHHHHHhhcCCCCCceeEEEEeC-------CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 123 KI-NFIESEALSVLDQLLKDSENEGSFDYAFVDA-------DKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 123 ~v-~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-------~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
.| .++.+|..+.-+-.... ....+||+|+... ....+...++++.++|||||.+++..++
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~-~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPV-VLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS--SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhceEEEeeccCCCCCCccc-cCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 13 35566664432211000 0123599997542 2344667788888999999999997776
No 277
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.88 E-value=0.024 Score=51.23 Aligned_cols=134 Identities=20% Similarity=0.286 Sum_probs=92.3
Q ss_pred ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe
Q 026547 52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE 128 (237)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 128 (237)
.-.++...++|..+....+..+|.|-.||+|......++.+.. ...++|.|+++.....++-++--.|....+...+
T Consensus 168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~ 247 (489)
T COG0286 168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRH 247 (489)
T ss_pred cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccc
Confidence 3356888889988888766679999999999987766665532 3679999999999999999988777753456666
Q ss_pred ccchHHHHHHhhcCCCCCceeEEEEeCCC----------------------------cCcHHHHHHHHccCCCCe---EE
Q 026547 129 SEALSVLDQLLKDSENEGSFDYAFVDADK----------------------------VNYWNYHERLMKLLKVGG---IA 177 (237)
Q Consensus 129 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG---~l 177 (237)
+|......... ......||+|+.+.+- .....+++.+...|+||| ++
T Consensus 248 ~dtl~~~~~~~--~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 248 GDTLSNPKHDD--KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccCCcccc--cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 66544321110 0123679988643110 111467888889999865 56
Q ss_pred EEeCcCCCCc
Q 026547 178 VYDNTLWGGT 187 (237)
Q Consensus 178 v~~~~~~~g~ 187 (237)
+.++++++|.
T Consensus 326 l~~gvlfr~~ 335 (489)
T COG0286 326 LPDGVLFRGG 335 (489)
T ss_pred ecCCcCcCCC
Confidence 6677777663
No 278
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.86 E-value=0.0073 Score=52.24 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=70.1
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcCCCCCc
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDSENEGS 147 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~ 147 (237)
++.+|+-+|||. |..+..+++.++ ..+|+.+|.+++.++.|++.... +.+..... +......... ....
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCC
Confidence 444899999997 667777888876 68999999999999999885421 11111112 2222222221 1247
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+|++|-... ....++.+.+.+++||.+++-.+.
T Consensus 239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence 999986554 456788899999999999987655
No 279
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.012 Score=45.67 Aligned_cols=103 Identities=15% Similarity=0.238 Sum_probs=63.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHH--HHHhhcCCCC
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVL--DQLLKDSENE 145 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~--~~~~~~~~~~ 145 (237)
.+..+|||+||..|.++.-..+...+++.|.|||+-+-. .. .-++++.+ |..+.. ..+.+. -+.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~-~Ga~~i~~~dvtdp~~~~ki~e~-lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PP-EGATIIQGNDVTDPETYRKIFEA-LPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CC-CCcccccccccCCHHHHHHHHHh-CCC
Confidence 457799999999999998877777569999999974311 11 12455555 333311 111111 124
Q ss_pred CceeEEEEeCCCc-------CcHHHHHHH-------HccCCCCeEEEEeCcCCCC
Q 026547 146 GSFDYAFVDADKV-------NYWNYHERL-------MKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 146 ~~~D~i~id~~~~-------~~~~~~~~~-------~~~L~~gG~lv~~~~~~~g 186 (237)
.+.|+|+.|..+. +....++.| ...++|+|.+++. +|.|
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG 187 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence 7899999874321 112223333 3678899999997 5666
No 280
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.0057 Score=54.54 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhhcC------CCEEEEEcccccHHHHHHH---hhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE
Q 026547 56 PDAGQLMAMLLKLVN------AKKTIEIGVFTGYSLLLTA---LTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF 126 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~------~~~vLeiG~G~G~~~~~la---~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 126 (237)
.+..+++..|....+ ...|+-+|.|.|-...... +...+..++++||.+|.++-..+. ......+++|++
T Consensus 347 ~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vti 425 (649)
T KOG0822|consen 347 QYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTI 425 (649)
T ss_pred HHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEE
Confidence 344445555544321 3367889999998755443 333346789999999988765443 333455678999
Q ss_pred EeccchHHHHHHhhcCCCCCceeEEEE-----eCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 127 IESEALSVLDQLLKDSENEGSFDYAFV-----DADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 127 ~~~d~~~~~~~~~~~~~~~~~~D~i~i-----d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
+.+|..++-+. ..+.|+++. .++-+.-+++++.+.+.|+|+|+.|-..
T Consensus 426 i~~DMR~w~ap-------~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 426 ISSDMRKWNAP-------REQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred EeccccccCCc-------hhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 99999887531 278898852 2445556899999999999999877654
No 281
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=96.70 E-value=0.024 Score=42.31 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=54.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
+.-|||+|-|.|..=-+|-..+| +-+|+.+|..-.. +-.. ..+.-+++.||+.++++.+..- ..+.-+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~------hp~~--~P~~~~~ilGdi~~tl~~~~~~---g~~a~l 96 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALAC------HPSS--TPPEEDLILGDIRETLPALARF---GAGAAL 96 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-------GGG-----GGGEEES-HHHHHHHHHHH----S-EEE
T ss_pred CCceEEeccCCCccHHHHHHhCC-CCeEEEEeeeccc------CCCC--CCchHheeeccHHHHhHHHHhc---CCceEE
Confidence 35799999999999889999988 8899999963211 1000 1123468999999999884322 355666
Q ss_pred EEEeCCCcCcH---H---HHH-HHHccCCCCeEEEEeCcC
Q 026547 151 AFVDADKVNYW---N---YHE-RLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 151 i~id~~~~~~~---~---~~~-~~~~~L~~gG~lv~~~~~ 183 (237)
+..|....+.. . .+. .+.++|.+||++|-...+
T Consensus 97 aHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl 136 (160)
T PF12692_consen 97 AHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPL 136 (160)
T ss_dssp EEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS--
T ss_pred EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 66665433321 1 111 223799999999987655
No 282
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.58 E-value=0.0066 Score=44.24 Aligned_cols=91 Identities=20% Similarity=0.268 Sum_probs=61.9
Q ss_pred cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC
Q 026547 80 FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN 159 (237)
Q Consensus 80 G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~ 159 (237)
|.|..++.+|++.. .+|+++|.++...+.+++ .|...-+.....|..+.+..+. ....+|+||-...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT----TTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccccccccccccccccccccc----ccccceEEEEecC---
Confidence 45888999999875 899999999988877665 3522111111223344444442 1257999975543
Q ss_pred cHHHHHHHHccCCCCeEEEEeCcC
Q 026547 160 YWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 160 ~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
....++...+.|+++|.+++-...
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESST
T ss_pred cHHHHHHHHHHhccCCEEEEEEcc
Confidence 357888999999999999987654
No 283
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.51 E-value=0.0018 Score=53.72 Aligned_cols=104 Identities=15% Similarity=0.078 Sum_probs=70.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
..+..|+|+-.|.||.|+.+.-... ...|+++|.+|..++..+++++.++..++..++.||....-+ ....
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~A 263 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRA 263 (351)
T ss_pred cccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccc
Confidence 3457899999999999994433333 568999999999999999999988877777777777655422 3566
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCC-Ce-EEEEeCc
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKV-GG-IAVYDNT 182 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~-gG-~lv~~~~ 182 (237)
|-|.+..-.+.-..+...+ +.|+| || ++-+|..
T Consensus 264 drVnLGLlPSse~~W~~A~-k~Lk~eggsilHIHen 298 (351)
T KOG1227|consen 264 DRVNLGLLPSSEQGWPTAI-KALKPEGGSILHIHEN 298 (351)
T ss_pred hheeeccccccccchHHHH-HHhhhcCCcEEEEecc
Confidence 7776654333323333334 56666 44 5555433
No 284
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.50 E-value=0.12 Score=41.18 Aligned_cols=108 Identities=13% Similarity=0.100 Sum_probs=63.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhc------------------------------
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKA------------------------------ 118 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~------------------------------ 118 (237)
.|-.+.|-.||+|+...-+....+. -.+|++-|+++++++.|++|+.-.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4558999999999976665544432 258999999999999998665211
Q ss_pred -----------CCCCcEEEEeccchHHHH--HHhhcCCCCCceeEEEEeCC-------Cc-----CcHHHHHHHHccCCC
Q 026547 119 -----------GVDHKINFIESEALSVLD--QLLKDSENEGSFDYAFVDAD-------KV-----NYWNYHERLMKLLKV 173 (237)
Q Consensus 119 -----------~~~~~v~~~~~d~~~~~~--~~~~~~~~~~~~D~i~id~~-------~~-----~~~~~~~~~~~~L~~ 173 (237)
|-.....+.+.|..+.-. ... . ....|+|+-|.+ .. -...+++.+.+.|..
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~---~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~ 206 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-A---GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE 206 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-T---T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-c---CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC
Confidence 112225567777766332 221 1 244699998842 11 135789999999988
Q ss_pred CeEEEEeC
Q 026547 174 GGIAVYDN 181 (237)
Q Consensus 174 gG~lv~~~ 181 (237)
++++++.|
T Consensus 207 ~sVV~v~~ 214 (246)
T PF11599_consen 207 RSVVAVSD 214 (246)
T ss_dssp T-EEEEEE
T ss_pred CcEEEEec
Confidence 88888843
No 285
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.13 Score=41.97 Aligned_cols=120 Identities=13% Similarity=0.143 Sum_probs=81.1
Q ss_pred cHHHHHHHHH----HHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHH-HhcCCCCcEEE
Q 026547 55 APDAGQLMAM----LLKLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQIMAIDVNRETYEIGLPVI-KKAGVDHKINF 126 (237)
Q Consensus 55 ~~~~~~~l~~----l~~~~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~ 126 (237)
.+..+.++.. ++....+...+|+|+|+-.-+..+..++.. -.+.+.||++...++...+.+ .++. .-.+.-
T Consensus 59 TRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-~l~v~~ 137 (321)
T COG4301 59 TRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-GLEVNA 137 (321)
T ss_pred chhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-CCeEee
Confidence 4556666654 455678899999999999988888877753 258999999999986554444 3433 223667
Q ss_pred EeccchHHHHHHhhcCCCCCceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEE
Q 026547 127 IESEALSVLDQLLKDSENEGSFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
+++|....+..+.. .+.==++|+... ...-..|+.++...++||-.+++
T Consensus 138 l~~~~~~~La~~~~----~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 138 LCGDYELALAELPR----GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred hhhhHHHHHhcccC----CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 78887777666521 122223343322 22235789999999999988776
No 286
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.31 E-value=0.00065 Score=53.47 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=64.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
.+.++||+|.|.|-.+..++..+. +|++.|+|..|....++. + .+++ ...++... +-+||
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk----~----ynVl--~~~ew~~t-------~~k~d 171 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK----N----YNVL--TEIEWLQT-------DVKLD 171 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc----C----Ccee--eehhhhhc-------Cceee
Confidence 357999999999999999987654 699999998887655442 2 1222 12233221 35799
Q ss_pred EEEEeC---CCcCcHHHHHHHHccCCC-CeEEEEeCcC
Q 026547 150 YAFVDA---DKVNYWNYHERLMKLLKV-GGIAVYDNTL 183 (237)
Q Consensus 150 ~i~id~---~~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 183 (237)
+|.+-. .+-+.-..++.++..|+| .|.+|+.-++
T Consensus 172 li~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 172 LILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred hHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 986431 233456788888888998 7877776554
No 287
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.20 E-value=0.06 Score=47.05 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=68.5
Q ss_pred HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc-chHHHHHHhhcC
Q 026547 65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE-ALSVLDQLLKDS 142 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~ 142 (237)
+....++.+||.+|+|. |..+..+++..+ ..+|++++.+++..+.+++.. +. ..+.....+ ..+.+..+.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~--- 250 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT--- 250 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc---
Confidence 34455678999999988 888888988865 347999999998888777642 21 112222221 222232221
Q ss_pred CCCCceeEEEEeCCC------------------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547 143 ENEGSFDYAFVDADK------------------VNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 143 ~~~~~~D~i~id~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
....+|+|+-.... .+....++.+.+.++++|.++.-.
T Consensus 251 -~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 251 -GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred -CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 12469988643211 112456788889999999888754
No 288
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=96.00 E-value=0.015 Score=42.48 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=39.1
Q ss_pred cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc--C----cHHHHHHHHccCCCCeEEEEe
Q 026547 123 KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV--N----YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 123 ~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~----~~~~~~~~~~~L~~gG~lv~~ 180 (237)
.+++..||+.+.++.+ ...+|+||.|+-.+ + ..++|+.+.+++++||+++.-
T Consensus 32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty 89 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY 89 (124)
T ss_dssp EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence 3567899999999987 48999999996322 2 468999999999999999864
No 289
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.89 E-value=0.026 Score=40.31 Aligned_cols=89 Identities=18% Similarity=0.065 Sum_probs=57.3
Q ss_pred ccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCceeEEEEeC
Q 026547 79 VFTGYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGSFDYAFVDA 155 (237)
Q Consensus 79 ~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~D~i~id~ 155 (237)
||.|..+..+++.+.+.. +|+.+|.+++..+.+++. + +.++.||+.+. +... ...+.+.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERA-----GIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHT-----TGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhc-----CccccCEEEEcc
Confidence 455778888877775555 899999999987776653 2 67899998763 4433 247889888876
Q ss_pred CCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 156 DKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 156 ~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
......-..-...+.+.|...+++.
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5433222333334666676666653
No 290
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.87 E-value=0.057 Score=46.31 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=59.3
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
.++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++ .|...-+.....+..+ .... .+.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~----~~~~---~g~ 235 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDH----YKAE---KGY 235 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHH----Hhcc---CCC
Confidence 3567899888752 335556777653 3379999999988877665 3532111111112211 1111 245
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+|+||-.... ...++...+.|++||.++.-..
T Consensus 236 ~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 236 FDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 8988643322 3456777899999999987654
No 291
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.74 E-value=0.1 Score=47.28 Aligned_cols=108 Identities=18% Similarity=0.157 Sum_probs=67.4
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE--Eecc----------chHHH
Q 026547 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF--IESE----------ALSVL 135 (237)
Q Consensus 69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d----------~~~~~ 135 (237)
.++.+|+-+|+|. |..++..|+.++ ++|+++|.+++..+.+++. |.. .+.+ ...+ ..+..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aesl----GA~-~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESM----GAE-FLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CCe-EEEeccccccccccchhhhcchhHH
Confidence 4678999999986 667777888765 5899999999988877762 421 0111 0100 01111
Q ss_pred ----HHHhhcCCCCCceeEEEEeCCCcC--cHHH-HHHHHccCCCCeEEEEeCcCCCC
Q 026547 136 ----DQLLKDSENEGSFDYAFVDADKVN--YWNY-HERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 136 ----~~~~~~~~~~~~~D~i~id~~~~~--~~~~-~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
..+.+. ...+|+|+-...... .+.. .+.+.+.++|||+|+.-.+...|
T Consensus 236 ~~~~~~~~~~---~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG 290 (509)
T PRK09424 236 KAEMALFAEQ---AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG 290 (509)
T ss_pred HHHHHHHHhc---cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence 111110 246999986654322 2344 48899999999998876554334
No 292
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.67 E-value=0.38 Score=39.81 Aligned_cols=111 Identities=9% Similarity=0.059 Sum_probs=66.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC--CCcEEEEeccchHHH-HHHhhcCCCCC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV--DHKINFIESEALSVL-DQLLKDSENEG 146 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~-~~~~~~~~~~~ 146 (237)
....|+.+||| .-|..+-...+.+.+++=+|. |+.++.-++.+.+.+. .++.+++..|..+.+ ..+...++...
T Consensus 81 g~~qvV~LGaG--lDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 81 GIRQVVILGAG--LDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CCcEEEEeCCc--cccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 35689999995 545444332232456666664 5677777777776553 356888888876433 33432222122
Q ss_pred ceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 147 SFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 147 ~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
..-+++.-+ .......+++.+.+...||+.|+++-+.
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 233443332 2334567788887777799999998543
No 293
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.58 E-value=0.02 Score=50.99 Aligned_cols=100 Identities=14% Similarity=0.172 Sum_probs=59.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
...-++|+|...|.|..+..|... . |..+-.-|..-...-..+-+.|+ +-+.+ |..+.++. .+.+
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~---~--VWVMNVVP~~~~ntL~vIydRGL---IG~yh-DWCE~fsT------YPRT 427 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD---P--VWVMNVVPVSGPNTLPVIYDRGL---IGVYH-DWCEAFST------YPRT 427 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC---C--ceEEEecccCCCCcchhhhhccc---chhcc-chhhccCC------CCcc
Confidence 344579999999999999888642 2 33333322222222223333354 22222 33333333 3689
Q ss_pred eeEEEEeCC------CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 148 FDYAFVDAD------KVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 148 ~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
||+|..++- .-.....+-++-|.|+|||.+++.|-
T Consensus 428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 999976632 22345667777799999999999764
No 294
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.46 E-value=0.16 Score=42.94 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=61.7
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 67 KLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
....+.+||..|+| .|..++.+|+.. +.+|++++.+++..+.+++ .|....+.....+..+.+ ... ..
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~ 230 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LG 230 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cC
Confidence 34566788888876 367777788765 4679999999887766644 354211111111222222 111 13
Q ss_pred CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
..+|+++-... ....++.+.+.|+++|.++.-
T Consensus 231 ~~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 231 GGFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCceEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 67998763322 245678888999999998864
No 295
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.39 E-value=0.047 Score=43.55 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=52.0
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH-HHHHhhcCCCCCceeE
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV-LDQLLKDSENEGSFDY 150 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~~~~D~ 150 (237)
-++|||||-+..+.+.-.. --.|+.||+++.. -.+.+.|..+. ++.. ..++||+
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~~-----~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPKN-----ESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCCC-----cccceeE
Confidence 5899999987776554322 3469999998732 12345554443 2211 2478999
Q ss_pred EEEeCC------CcCcHHHHHHHHccCCCCeE
Q 026547 151 AFVDAD------KVNYWNYHERLMKLLKVGGI 176 (237)
Q Consensus 151 i~id~~------~~~~~~~~~~~~~~L~~gG~ 176 (237)
|.+... ....-+.+..+.++|+++|.
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 976522 22334788888899999999
No 296
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.38 E-value=0.063 Score=46.26 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 026547 58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLP 113 (237)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 113 (237)
..+++..++...+.+.|+|+|.|.|+.+..++-.+ +-.|++||-++...+.|++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 34566667777888999999999999999998765 5799999999776665553
No 297
>PRK11524 putative methyltransferase; Provisional
Probab=95.36 E-value=0.065 Score=44.96 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=45.1
Q ss_pred HHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh
Q 026547 58 AGQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK 117 (237)
Q Consensus 58 ~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 117 (237)
-.+++..++.. .+++.|||--+|+|..++...+. +-+.+|+|++++.++.|+++++.
T Consensus 194 P~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 35666666654 46789999999999887766553 45899999999999999999854
No 298
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.32 E-value=0.25 Score=41.69 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=70.7
Q ss_pred CCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 71 AKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 71 ~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
+.+|.-||-|. |..+..+|-.+ ++.|+-+|+|.+.+++....+ ..+++.+..+...+-... .+.|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~~aD 233 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------KKAD 233 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------hhcc
Confidence 34677777764 77788888765 579999999999888777665 246888888877766554 6788
Q ss_pred EEEEe---CCCcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 150 YAFVD---ADKVNYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 150 ~i~id---~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
+++-. .......-..+++.+.++||++|+=-.+.-.|
T Consensus 234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGG 273 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGG 273 (371)
T ss_pred EEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCC
Confidence 88632 22333344567777899999988644333333
No 299
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.22 E-value=0.12 Score=42.33 Aligned_cols=102 Identities=18% Similarity=0.140 Sum_probs=58.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-----hcCCCCcEEEEe---ccchHHHHHHhhc
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK-----KAGVDHKINFIE---SEALSVLDQLLKD 141 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~v~~~~---~d~~~~~~~~~~~ 141 (237)
+..+|||+|+|+|..++.+|... ...|...|... .......+.. ..++...+.+.. +++.+....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---- 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---- 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence 46689999999999888877753 46788777643 3332222221 112222333322 333222111
Q ss_pred CCCCCc-eeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 142 SENEGS-FDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 142 ~~~~~~-~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.+. +|+|+.... .+.+......+..+|..+|++.+.-
T Consensus 159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 234 899975432 3445666777778888888665543
No 300
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.17 E-value=0.23 Score=42.81 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=61.3
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
...++.+||-.|+|. |..++.+|+... ..+|++++.+++..+.+++ .|.+.-+.....+..+.+..+. ..
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~ 243 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GG 243 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CC
Confidence 345678999998743 334556777653 2369999999888777654 3532112222223333333321 12
Q ss_pred CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
..+|+|+ |... ....++...+.+++||.+++-..
T Consensus 244 ~g~d~vi-d~~g--~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 244 FGADVVI-DAVG--RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCEEE-ECCC--CHHHHHHHHHHhccCCEEEEECC
Confidence 4689886 4322 13456777789999999987544
No 301
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.15 E-value=0.19 Score=43.11 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=57.1
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
.++.+||-+|+|. |..+..+++......+|+++|.+++.++.+++ .+. .... + +. .. ...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~-~~-------~~g 222 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DI-PE-------DLA 222 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hh-hh-------ccC
Confidence 4578999999743 22334555542214689999999888777754 231 1111 1 11 11 135
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
+|+||-..........++...++|++||.+++-.
T Consensus 223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 8988643332224567788889999999998754
No 302
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.07 E-value=0.024 Score=46.92 Aligned_cols=103 Identities=23% Similarity=0.197 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (237)
-+.+.+++... ..+..++|+|||.|-.+. .. | ..-+++.|++...+..+++. | -.++..+|++..
T Consensus 33 Wp~v~qfl~~~---~~gsv~~d~gCGngky~~---~~-p-~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~ 97 (293)
T KOG1331|consen 33 WPMVRQFLDSQ---PTGSVGLDVGCGNGKYLG---VN-P-LCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKL 97 (293)
T ss_pred cHHHHHHHhcc---CCcceeeecccCCcccCc---CC-C-cceeeecchhhhhccccccC----C---CceeehhhhhcC
Confidence 35566655544 346789999999996432 11 2 56899999998888766652 2 226777887765
Q ss_pred HHHHhhcCCCCCceeEEEEeCCCcC------cHHHHHHHHccCCCCeEEEE
Q 026547 135 LDQLLKDSENEGSFDYAFVDADKVN------YWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~~~------~~~~~~~~~~~L~~gG~lv~ 179 (237)
.. ...+||.++.-+..++ -...++.+.+.|+|||-.++
T Consensus 98 p~-------~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 98 PF-------REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred CC-------CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 32 3588998875443333 35678899999999997655
No 303
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.05 E-value=0.39 Score=41.37 Aligned_cols=103 Identities=12% Similarity=0.049 Sum_probs=64.1
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcC
Q 026547 66 LKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDS 142 (237)
Q Consensus 66 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~ 142 (237)
....++.+||-.|+ +.|..++.+|+.. +.+|++++.+++..+.+++. .|...-+..... +..+.+..+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~---- 224 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRY---- 224 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHH----
Confidence 34556789999987 3666777888875 56899999888776655432 354321222111 233333332
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
....+|+++ |... ...++.+.+.|++||.+++-..
T Consensus 225 -~~~gvD~v~-d~vG---~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 225 -FPEGIDIYF-DNVG---GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred -CCCCcEEEE-ECCC---HHHHHHHHHHhccCCEEEEECc
Confidence 124689887 4322 2467788899999999986543
No 304
>PTZ00357 methyltransferase; Provisional
Probab=95.05 E-value=0.13 Score=47.83 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=67.8
Q ss_pred EEEEEcccccHHHHHHHh---hCCCCCEEEEEeCCchHHHHHHHHHHh-cCC-------CCcEEEEeccchHHHHHHhhc
Q 026547 73 KTIEIGVFTGYSLLLTAL---TIPEDGQIMAIDVNRETYEIGLPVIKK-AGV-------DHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~---~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~-------~~~v~~~~~d~~~~~~~~~~~ 141 (237)
.|+-+|+|.|-+.....+ ......+|++||.++..+...+.+... ..+ .++|+++..|...+.......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999987554433 333356899999998766555544322 122 346999999998874321000
Q ss_pred ----CCCCCceeEEEE-----eCCCcCcHHHHHHHHccCCC----CeE
Q 026547 142 ----SENEGSFDYAFV-----DADKVNYWNYHERLMKLLKV----GGI 176 (237)
Q Consensus 142 ----~~~~~~~D~i~i-----d~~~~~~~~~~~~~~~~L~~----gG~ 176 (237)
+...+++|+|+. .++-+.-++.++.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 001247999973 24455568999999888876 675
No 305
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.03 E-value=0.078 Score=42.25 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=36.8
Q ss_pred HHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 026547 58 AGQLMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLP 113 (237)
Q Consensus 58 ~~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 113 (237)
-.+++..++. ..++..|||.-||+|..+....+. +-+.+|+|++++..+.|++
T Consensus 177 P~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhhhccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 3444545444 356789999999999987766553 4489999999999998874
No 306
>PRK13699 putative methylase; Provisional
Probab=94.87 E-value=0.041 Score=44.60 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=39.1
Q ss_pred EEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc------------------CcHHHHHHHHccCCCCeEEEE
Q 026547 124 INFIESEALSVLDQLLKDSENEGSFDYAFVDADKV------------------NYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 124 v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------------------~~~~~~~~~~~~L~~gG~lv~ 179 (237)
.+++++|+.+.+..+. ++++|+|+.|.+-. ....+++++.++|+|||.+++
T Consensus 2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3688999999998873 58999999884321 123567888899999998875
No 307
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.80 E-value=0.27 Score=42.60 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=60.1
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
...++.+||-.|+|. |..+..+|+... ..+|+++|.+++..+.+++ .|...-+.....+..+.+..+. .
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~ 257 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----G 257 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----C
Confidence 345667888888743 334555666543 2369999999988777654 3532111211122222222221 2
Q ss_pred CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+.+|+||-... ....++...+.|+++|.++.-..
T Consensus 258 ~g~d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 258 GGVDYAFEMAG---SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCCEEEECCC---ChHHHHHHHHHHhcCCEEEEEcc
Confidence 36898864322 23567777889999999886543
No 308
>PRK13699 putative methylase; Provisional
Probab=94.76 E-value=0.14 Score=41.54 Aligned_cols=57 Identities=7% Similarity=0.034 Sum_probs=43.7
Q ss_pred HHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc
Q 026547 59 GQLMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA 118 (237)
Q Consensus 59 ~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 118 (237)
.+++..++. ..++..|||--||+|..+....+. +-+.+|+|++++..+.+.+++++.
T Consensus 150 ~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 344444443 346789999999999987766553 458999999999999999988664
No 309
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.73 E-value=0.079 Score=44.57 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhcCC-------CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH---Hhc---------
Q 026547 58 AGQLMAMLLKLVNA-------KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI---KKA--------- 118 (237)
Q Consensus 58 ~~~~l~~l~~~~~~-------~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~---~~~--------- 118 (237)
...++..|-...++ -+||--|||.|.++..++.... .+-|=|.+--|+-...=.+ +.-
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfI 207 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFI 207 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeee
Confidence 34455555554443 4899999999999999987533 4445565544432111011 000
Q ss_pred ---------------------------CCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE----EeCCCcCcHHHHHHH
Q 026547 119 ---------------------------GVDHKINFIESEALSVLDQLLKDSENEGSFDYAF----VDADKVNYWNYHERL 167 (237)
Q Consensus 119 ---------------------------~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~----id~~~~~~~~~~~~~ 167 (237)
+.........||..+..... .+.+.||+|+ +|. .++..++++.+
T Consensus 208 h~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s----~~~~~~d~VvTcfFIDT-a~NileYi~tI 282 (369)
T KOG2798|consen 208 HQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTS----SGAGSYDVVVTCFFIDT-AHNILEYIDTI 282 (369)
T ss_pred eccccccccccccccccCccccccccCCCCCCccccccceeEEecCc----CCCCccceEEEEEEeec-hHHHHHHHHHH
Confidence 00011222335555443321 1235799884 454 45778999999
Q ss_pred HccCCCCeEEEEeCcC
Q 026547 168 MKLLKVGGIAVYDNTL 183 (237)
Q Consensus 168 ~~~L~~gG~lv~~~~~ 183 (237)
.+.|+|||+-|=-..+
T Consensus 283 ~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 283 YKILKPGGVWINLGPL 298 (369)
T ss_pred HHhccCCcEEEeccce
Confidence 9999999987754443
No 310
>PRK11524 putative methyltransferase; Provisional
Probab=94.67 E-value=0.071 Score=44.72 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=40.1
Q ss_pred cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc------C-------------cHHHHHHHHccCCCCeEEEEe
Q 026547 123 KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV------N-------------YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 123 ~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------~-------------~~~~~~~~~~~L~~gG~lv~~ 180 (237)
..+++++|+.+.+..+. .++||+|++|.+-. . ...++..+.++|++||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35789999999887663 47899999985411 0 135778888999999998874
No 311
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.44 E-value=0.06 Score=46.40 Aligned_cols=97 Identities=22% Similarity=0.223 Sum_probs=74.5
Q ss_pred cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
.+.....-+.++++...++..|+|+.|..|..|.+++..+...++++++|.++...+..++.+...|.+. ++...+|..
T Consensus 196 ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~ 274 (413)
T KOG2360|consen 196 ILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFL 274 (413)
T ss_pred EEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-ccccccccc
Confidence 3444445556677777788999999999999999999988768999999999999999999999999754 666688876
Q ss_pred HHHHHHhhcCCCCCceeEEEEeC
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDA 155 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~ 155 (237)
.+ +.. +.-...-.|++|.
T Consensus 275 ~t-~~~----~~~~~v~~iL~Dp 292 (413)
T KOG2360|consen 275 NT-ATP----EKFRDVTYILVDP 292 (413)
T ss_pred CC-CCc----ccccceeEEEeCC
Confidence 64 211 1125566777774
No 312
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.38 E-value=0.54 Score=38.11 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=60.9
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
.++.+||..|+|. |..+..+++.. +.+|++++.+++..+.+++ .+....+.....+....+. .. ....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~~----~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-LT----GGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-Hh----cCCC
Confidence 5678999999985 66677777764 4789999998877666543 2322111111112212111 11 1367
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
+|+++..... ...++.+.+.|+++|.++.-.
T Consensus 202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCEEEECCCC---HHHHHHHHHhcccCCEEEEEc
Confidence 9999854332 145677778899999988643
No 313
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.38 E-value=0.56 Score=40.17 Aligned_cols=105 Identities=22% Similarity=0.233 Sum_probs=60.0
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
...++.+||-.|+|. |..+..+|+... ...|++++.+++..+.+++ .|...-+.....+ .+.+..+.. .
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~~----~ 226 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVLR----E 226 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHhc----C
Confidence 344677999998743 334455676653 2347899988887766543 3532111111112 122222211 2
Q ss_pred CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
..+|.+++|+.-. ...+....+.|++||.+++-...
T Consensus 227 ~~~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 227 LRFDQLILETAGV--PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred CCCCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEccC
Confidence 4678555665432 45677788999999999876543
No 314
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.35 E-value=0.46 Score=40.60 Aligned_cols=104 Identities=23% Similarity=0.326 Sum_probs=67.7
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcCC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDSE 143 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~ 143 (237)
++..++.+|.-+|||. |..++.-|+... ..+|+++|++++.++.|++. |-..-++.... |..+.+..+.
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T---- 251 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT---- 251 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc----
Confidence 4566778999999975 666666676655 78999999999999888774 54322222222 4445555442
Q ss_pred CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
....|..|--. ...+.++.....++++|..++-.+
T Consensus 252 -~gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 252 -DGGADYAFECV---GNVEVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred -CCCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEec
Confidence 34677775332 223466667777777888777544
No 315
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.25 E-value=0.74 Score=39.18 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=58.0
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
...++.+||-+|+|. |..+..+++.. +.+ |++++.+++..+.+++ .|...-+.....+ .+.+..+. .
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~ 228 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----S 228 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----C
Confidence 345678999988642 33445566665 345 9999998887766644 3532212221122 22222221 1
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
...+|+||-... ....++...+.|+++|.+++-.
T Consensus 229 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 229 GAGADVAIECSG---NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEEc
Confidence 247998874332 2345566778999999988643
No 316
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.16 E-value=0.09 Score=43.91 Aligned_cols=95 Identities=13% Similarity=0.018 Sum_probs=62.6
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF 152 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 152 (237)
+++|+.||.|..+..+..+- -..+.++|+++..++..+.++.. .++++|+.+....-. ...+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~-----~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF-----IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc-----CCCCCEEE
Confidence 68999999999988877642 23688999999999888887631 156677766543210 25799998
Q ss_pred EeCCCc------------C-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547 153 VDADKV------------N-----YWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 153 id~~~~------------~-----~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
.+.+.+ + +.++++.+ +.++|. ++++.|+.
T Consensus 68 ~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i-~~~~P~-~~v~ENV~ 113 (275)
T cd00315 68 GGFPCQPFSIAGKRKGFEDTRGTLFFEIIRIL-KEKKPK-YFLLENVK 113 (275)
T ss_pred eCCCChhhhHHhhcCCCCCchHHHHHHHHHHH-HhcCCC-EEEEEcCc
Confidence 753221 1 12333333 556774 77888874
No 317
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.16 E-value=0.072 Score=43.83 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=37.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchHHHHHHHHHHh
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPE-------DGQIMAIDVNRETYEIGLPVIKK 117 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~ 117 (237)
+-+|+|+|.|+|..+..+++.+.. ..+++.||.||.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999988877653 35899999999999888888765
No 318
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.00 E-value=0.15 Score=41.02 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=62.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC----C----CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHh
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPE----D----GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLL 139 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~----~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~ 139 (237)
.-++++|+....|.++..+++.+-+ . .+|++||+.+= +++. -|.-+++|+.. .++...
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~-GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIE-GVIQLQGDITSASTAEAII 108 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccC-ceEEeecccCCHhHHHHHH
Confidence 3568999999999999998876632 1 13999998652 1232 25556777533 222222
Q ss_pred hcCCCCCceeEEEEeCCC-----cCcHHH---------HHHHHccCCCCeEEEEe
Q 026547 140 KDSENEGSFDYAFVDADK-----VNYWNY---------HERLMKLLKVGGIAVYD 180 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~~-----~~~~~~---------~~~~~~~L~~gG~lv~~ 180 (237)
+. ++.++-|+|++|+.. +...+| +.-....|+|||.+|..
T Consensus 109 ~h-fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 109 EH-FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HH-hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 22 345799999999743 223333 23333789999998864
No 319
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=93.97 E-value=0.16 Score=38.26 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=28.2
Q ss_pred EEccccc--HHHHHHH-hhCCCCCEEEEEeCCchHHHHHHHH--HHhc
Q 026547 76 EIGVFTG--YSLLLTA-LTIPEDGQIMAIDVNRETYEIGLPV--IKKA 118 (237)
Q Consensus 76 eiG~G~G--~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~ 118 (237)
|||+..| ..+.+++ +...+..+|+++|++|...+..+++ +.-.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7999999 6666654 2344478999999999999988888 5443
No 320
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.94 E-value=0.47 Score=43.10 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec------------cchHHH-
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES------------EALSVL- 135 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~------------d~~~~~- 135 (237)
++.+|+-+|+|. |..+..+++.+ +++|+.+|.++..++.++. .|.. .+++-.. -..++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHHH
Confidence 567999999976 35566667765 4679999999987776665 2321 1111100 001111
Q ss_pred ---HHHhhcCCCCCceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEE
Q 026547 136 ---DQLLKDSENEGSFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 136 ---~~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
..+.+. ...+|+||... ......-..+++.+.+|||++|+=
T Consensus 236 ~~~~~~~e~---~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 236 AEMELFAAQ---AKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHH---hCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111111 36799997544 222222246667789999988763
No 321
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.94 E-value=0.71 Score=40.28 Aligned_cols=104 Identities=16% Similarity=0.071 Sum_probs=57.2
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 70 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
++.+|+-+|+| .|..++..++.+ +.+|+.+|.+++..+.+...+ +. .+.....+. +.+... ...+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~l~~~------l~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YEIEDA------VKRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HHHHHH------HccC
Confidence 56789999987 455566666654 458999999887665544433 21 122222222 222222 2578
Q ss_pred eEEEEeCCC--cCcHH-HHHHHHccCCCCeEEEEeCcCCCCc
Q 026547 149 DYAFVDADK--VNYWN-YHERLMKLLKVGGIAVYDNTLWGGT 187 (237)
Q Consensus 149 D~i~id~~~--~~~~~-~~~~~~~~L~~gG~lv~~~~~~~g~ 187 (237)
|+|+..... ...+. +-+...+.+++|++++--.+...|.
T Consensus 232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~ 273 (370)
T TIGR00518 232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC 273 (370)
T ss_pred CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence 999865311 11122 2255557788987766433333343
No 322
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.90 E-value=0.9 Score=38.69 Aligned_cols=94 Identities=14% Similarity=0.144 Sum_probs=58.4
Q ss_pred CEEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 72 KKTIEIGV--FTGYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 72 ~~vLeiG~--G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.+||-.|. |.|..++.+|++. +. +|++++.+++..+.+++. .|.+.-+.....+..+.+..+ ....+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~-----~~~gv 225 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL-----CPEGV 225 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH-----CCCCc
Confidence 78999885 5666777788875 45 799999888766655553 354321222222333333333 12569
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
|+|+ |.... ..++.+++.|+++|.++.
T Consensus 226 d~vi-d~~g~---~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 226 DVYF-DNVGG---EISDTVISQMNENSHIIL 252 (345)
T ss_pred eEEE-ECCCc---HHHHHHHHHhccCCEEEE
Confidence 9887 43222 235778899999999886
No 323
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.87 E-value=0.73 Score=39.45 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=64.5
Q ss_pred HhhcCCCEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547 66 LKLVNAKKTIEIGVFT--GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
.....+++||-.|... |..++.||+++. .+++.+--+++..+ .+++.|-+.-+++...|..+.+..+.
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t---- 207 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELT---- 207 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHc----
Confidence 4456688999999554 446778888764 36666666665444 34445644345555666555555442
Q ss_pred CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
....+|+|+-... .+.+......|+++|.++.-..
T Consensus 208 ~g~gvDvv~D~vG----~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 208 GGKGVDVVLDTVG----GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCCceEEEECCC----HHHHHHHHHHhccCCEEEEEec
Confidence 1247999974322 3556667788999998887444
No 324
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.68 E-value=1 Score=38.53 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=62.6
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 66 LKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
+...++++||-.|+| .|..+..+|+... ...+++++.+++..+.+++ .|...-+.....+..+.+..+. .
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~ 232 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----G 232 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----C
Confidence 345567888888865 3445666777654 3369999998877666554 4542212221222222222221 1
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
...+|+++-.... ...+..+++.|+++|.++.-...
T Consensus 233 ~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 233 GKGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred CCCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEeccc
Confidence 2569988743322 35677888999999988864443
No 325
>PLN02740 Alcohol dehydrogenase-like
Probab=93.67 E-value=0.96 Score=39.43 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=59.9
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe--ccchHHHHHHhhcC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE--SEALSVLDQLLKDS 142 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~ 142 (237)
+...++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++ .|....+.... .+..+.+..+.
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 265 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT--- 265 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh---
Confidence 4456678999998742 334455666643 2379999999888777754 35422122111 11222233221
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT 182 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 182 (237)
.+.+|+|+-... ....++.....+++| |.+++-..
T Consensus 266 --~~g~dvvid~~G---~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 266 --GGGVDYSFECAG---NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred --CCCCCEEEECCC---ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 136998864332 235567777888886 88776443
No 326
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.50 E-value=0.35 Score=36.67 Aligned_cols=95 Identities=17% Similarity=0.088 Sum_probs=58.3
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC------CCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG------VDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
+|.-||+|.+..++....... +-+|+....+++.++..++.-.... +..++.+ ..|..+.+ +
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C
Confidence 467788888776554322222 4589999999877776665422111 1123332 33443332 5
Q ss_pred ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
.-|+|++-.+.....++++++.+.++++-.++.
T Consensus 69 ~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 69 DADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred cccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 668999988888889999999999988776665
No 327
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.48 E-value=0.8 Score=39.30 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=60.8
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
...++.+||-+|+|. |..+..+|+.. +.+|++++.+++..+.+++ .|...-+.....+..+......+- ...
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~-t~~ 235 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAF-AKA 235 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhh-ccc
Confidence 345678999999854 55666777765 4589999999988776654 353211221111111222211100 001
Q ss_pred Ccee----EEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 146 GSFD----YAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 146 ~~~D----~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
..+| .| +|... ....++.+.+.|++||.+++-...
T Consensus 236 ~g~d~~~d~v-~d~~g--~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 236 RGLRSTGWKI-FECSG--SKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CCCCCCcCEE-EECCC--ChHHHHHHHHHHhcCCeEEEECcC
Confidence 2454 44 44432 234666777899999999876543
No 328
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=93.47 E-value=1.5 Score=37.36 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=62.7
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcC
Q 026547 66 LKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDS 142 (237)
Q Consensus 66 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~ 142 (237)
....++.+||-.|+ +.|..+..+|+.. +.+|+++..+++..+.+++. .|...-+..... +..+.+....
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~--- 218 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF--- 218 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC---
Confidence 44567789999986 4566777788865 56899998888776666543 354321221111 2223333221
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
...+|+|+ |... ...++.+++.|+++|.++.-
T Consensus 219 --~~gvd~v~-d~~g---~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 219 --PNGIDIYF-DNVG---GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred --CCCcEEEE-ECCC---HHHHHHHHHHhccCcEEEEe
Confidence 25799887 4322 24577888999999998863
No 329
>PLN02827 Alcohol dehydrogenase-like
Probab=93.43 E-value=0.82 Score=39.86 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=59.0
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe--ccchHHHHHHhhcC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE--SEALSVLDQLLKDS 142 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~ 142 (237)
....++.+||-.|+|. |..++.+++... ...|++++.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~--- 260 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT--- 260 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh---
Confidence 3455678999998643 334455666653 3368999988877766643 45421121111 12222222221
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT 182 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 182 (237)
.+.+|+|+-... ....+....+.+++| |.+++-..
T Consensus 261 --~~g~d~vid~~G---~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 261 --GGGADYSFECVG---DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred --CCCCCEEEECCC---ChHHHHHHHHhhccCCCEEEEECC
Confidence 236898864332 234566777889998 99986443
No 330
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.39 E-value=1.7 Score=36.82 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=62.7
Q ss_pred HHhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhc
Q 026547 65 LLKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKD 141 (237)
Q Consensus 65 l~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~ 141 (237)
.+...++.+||-.|. +.|..++.+++.. +.+|++++.+++..+.+++ .|.+.-+..... +..+.+...
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~--- 203 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA--- 203 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh---
Confidence 445567789999884 4666777788864 5689999988877665543 454221221111 222222222
Q ss_pred CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
..+.+|+|+ |.... ..++..++.|+++|.++.-.
T Consensus 204 --~~~gvdvv~-d~~G~---~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 204 --SPDGYDCYF-DNVGG---EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred --CCCCeEEEE-ECCCH---HHHHHHHHHhCcCcEEEEec
Confidence 124699887 43222 34577889999999998643
No 331
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.31 E-value=0.28 Score=41.55 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=57.8
Q ss_pred CEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE-eccchHHHHHHhhcCCCCCce
Q 026547 72 KKTIEIGVFT--GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI-ESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 72 ~~vLeiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.+|+-+|+|. |+.+.+|++. +..|+.++..++.++..++ +.|+ .+. .+.. ...+.....+...++|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~-~~~~~~~~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQA-SLYAIPAETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcc-eeeccCCCCccccccc
Confidence 4688899875 3345555543 4579999987655554443 1122 111 0100 0000000000013689
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEE-EEeCcC
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIA-VYDNTL 183 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~l-v~~~~~ 183 (237)
|+|++.....+..+.++.+.+.+.+++.+ .+.|-+
T Consensus 72 D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv 107 (305)
T PRK05708 72 HRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGL 107 (305)
T ss_pred CEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence 99999877667778888899999998865 456554
No 332
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=93.31 E-value=0.83 Score=38.85 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=59.5
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 66 LKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
....++.+||..|+| .|..++.+|+... ..++++++.+++..+.+++ .|....+.....+..+.+..+. .
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~ 233 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----G 233 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----C
Confidence 345566788887764 3556677777654 2478888877766655543 3422112222222223333221 1
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
...+|+++-.... ...++..++.|+++|.++.-
T Consensus 234 ~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 234 GRGVDCVIEAVGF---EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence 2579988732221 24677788999999988854
No 333
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=93.24 E-value=1.6 Score=36.77 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=62.5
Q ss_pred HHhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547 65 LLKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS 142 (237)
Q Consensus 65 l~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 142 (237)
.....++.+||-.|. +.|..++.+|+.. +.+|++++.+++..+.+++ .|...-+.....+..+.+..+
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~---- 207 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA---- 207 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH----
Confidence 344566788988884 5566777788875 5689999988877666654 354221222122222323222
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
....+|+|+ |... ...++..++.|+++|.++.-
T Consensus 208 -~~~gvd~vl-d~~g---~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 208 -APDGIDCYF-DNVG---GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -CCCCcEEEE-ECCC---HHHHHHHHHhhccCCEEEEE
Confidence 125699886 4322 24567888999999998764
No 334
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.20 E-value=0.26 Score=39.84 Aligned_cols=83 Identities=8% Similarity=0.275 Sum_probs=54.3
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhc-CCCCcEEEEe-ccchHHHHHHhhcCCCCCce
Q 026547 72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKA-GVDHKINFIE-SEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~~ 148 (237)
-++||||+|.-. +|=.-... -+-+.+|.|+++..++.|+..+..+ ++...++++. -|....++..-. ..+.|
T Consensus 80 i~~LDIGvGAnC--IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig---~nE~y 154 (292)
T COG3129 80 IRILDIGVGANC--IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG---KNERY 154 (292)
T ss_pred eEEEeeccCccc--ccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc---cccee
Confidence 378999986543 43222111 1458999999999999999999877 6666677654 344334443311 14789
Q ss_pred eEEEEeCCCcC
Q 026547 149 DYAFVDADKVN 159 (237)
Q Consensus 149 D~i~id~~~~~ 159 (237)
|+..++.+-..
T Consensus 155 d~tlCNPPFh~ 165 (292)
T COG3129 155 DATLCNPPFHD 165 (292)
T ss_pred eeEecCCCcch
Confidence 99998865433
No 335
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.00 E-value=2.2 Score=35.32 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=58.5
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
.++++||-+|+|. |..+..+|+... ..+|+.+|.+++..+.+++ .|...-+.. .+..+.+..+. ....
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~----~~~g 187 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ----NGRG 187 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh----CCCC
Confidence 3667899998742 334556677653 2358999988887766655 343211111 11112222221 1246
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+|+++-.... ...++.+.+.|+++|.++.-...
T Consensus 188 ~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 188 VDVALEFSGA---TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence 8988643222 34667778999999999875543
No 336
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.89 E-value=0.9 Score=33.13 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=50.8
Q ss_pred HHHHhhcCCCEEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547 63 AMLLKLVNAKKTIEIGVFTGYS-LLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 63 ~~l~~~~~~~~vLeiG~G~G~~-~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 141 (237)
..+++..+.++|+|+|.|.=.. +..|.++ +..|+++|+++. .+. . .++++..|..+.-..+
T Consensus 6 ~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~---~a~-----~----g~~~v~DDif~P~l~i--- 67 (127)
T PF03686_consen 6 EYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR---KAP-----E----GVNFVVDDIFNPNLEI--- 67 (127)
T ss_dssp HHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHH---
T ss_pred HHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc---ccc-----c----CcceeeecccCCCHHH---
Confidence 3455566777999999987764 4445553 479999999987 111 2 3678888887644333
Q ss_pred CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
-...|+|+.--........+-.+.+. -|.-+++-
T Consensus 68 ---Y~~a~lIYSiRPP~El~~~il~lA~~--v~adlii~ 101 (127)
T PF03686_consen 68 ---YEGADLIYSIRPPPELQPPILELAKK--VGADLIIR 101 (127)
T ss_dssp ---HTTEEEEEEES--TTSHHHHHHHHHH--HT-EEEEE
T ss_pred ---hcCCcEEEEeCCChHHhHHHHHHHHH--hCCCEEEE
Confidence 26889999777666666666666553 24444443
No 337
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.83 E-value=2.6 Score=32.97 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=52.8
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHH------------HHHhcCCCCcEEEEeccchHHHHHHh
Q 026547 73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLP------------VIKKAGVDHKINFIESEALSVLDQLL 139 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~~~~~~ 139 (237)
+|--+|. |+.++.+|..+. .+-+|+++|++++.++..++ .+++.....+..+- .|..+.+
T Consensus 2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 4556666 555444443332 25699999999988776552 11111101222222 2222221
Q ss_pred hcCCCCCceeEEEEeCCC----------cCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 140 KDSENEGSFDYAFVDADK----------VNYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
...|++|+..+. +...+..+.+.+.++++.++++......|
T Consensus 75 ------~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG 125 (185)
T PF03721_consen 75 ------KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG 125 (185)
T ss_dssp ------HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT
T ss_pred ------hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe
Confidence 346788765321 22456677788899999999998887666
No 338
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.72 E-value=1.8 Score=36.56 Aligned_cols=119 Identities=12% Similarity=0.173 Sum_probs=72.7
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC--CcEEEEeccch-H-H
Q 026547 59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD--HKINFIESEAL-S-V 134 (237)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~-~-~ 134 (237)
.+++...+... .+.|+.+|| |.-|...--.-+++.+|+=+|. |+.++.=++.+++.+.. ..++++..|.. + +
T Consensus 82 D~~~~~~~~~g-~~qvViLga--GLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw 157 (297)
T COG3315 82 DDFVRAALDAG-IRQVVILGA--GLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDW 157 (297)
T ss_pred HHHHHHHHHhc-ccEEEEecc--ccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccch
Confidence 33333333333 689999999 5555544332233467777774 77888878888877643 36888999987 3 5
Q ss_pred HHHHhhcCCCCCceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 135 LDQLLKDSENEGSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
...+.+.++.....-+++.-+ .......+|+.+..++.||-.++++-
T Consensus 158 ~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 158 PQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred HHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 555654333233333444332 33445678888877777766666654
No 339
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=92.58 E-value=0.097 Score=45.77 Aligned_cols=65 Identities=22% Similarity=0.138 Sum_probs=56.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCc-EEEEeccchHHHH
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHK-INFIESEALSVLD 136 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~ 136 (237)
..+..|-|+.||.|-.++..+. ++++|++-|++++++++.+.++.-..+.+. ++.+..|+.+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~k---K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAK---KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhh---cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 4566889999999999988887 478999999999999999999988777765 9999999988874
No 340
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.48 E-value=1.9 Score=36.69 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=66.8
Q ss_pred HHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE--eccchHHHHHHhh
Q 026547 64 MLLKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI--ESEALSVLDQLLK 140 (237)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~ 140 (237)
..+...++.++.-.|+|.=. ..+.-+++.. .+++++||++++..+.|++. |..+-++.. ...+.+.+.+.
T Consensus 186 ~~Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~Em-- 258 (375)
T KOG0022|consen 186 NTAKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEM-- 258 (375)
T ss_pred hhcccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHH--
Confidence 45677788999999997633 4444455544 67999999999999888774 554333332 22355555554
Q ss_pred cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547 141 DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT 182 (237)
Q Consensus 141 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 182 (237)
.++.+|+-|--.. ..+.++++....++| |.-++-.+
T Consensus 259 ---TdgGvDysfEc~G---~~~~m~~al~s~h~GwG~sv~iGv 295 (375)
T KOG0022|consen 259 ---TDGGVDYSFECIG---NVSTMRAALESCHKGWGKSVVIGV 295 (375)
T ss_pred ---hcCCceEEEEecC---CHHHHHHHHHHhhcCCCeEEEEEe
Confidence 2578888873322 234555555555676 66555444
No 341
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=92.44 E-value=2.2 Score=37.01 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=59.9
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe--ccchHHHHHHhhcC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE--SEALSVLDQLLKDS 142 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~ 142 (237)
+....+.+||-.|+|. |..++.+|+... ..+|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 252 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT--- 252 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh---
Confidence 3455678999998753 445566777653 2379999999988777654 35422122111 11112222221
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT 182 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 182 (237)
.+.+|+++-... ....+....+.++++ |.+++-..
T Consensus 253 --~~g~d~vid~~G---~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 253 --DGGVDYSFECIG---NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred --CCCCCEEEECCC---CHHHHHHHHHHhhcCCCeEEEEec
Confidence 236898863322 134567777889886 88776443
No 342
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.44 E-value=0.84 Score=37.96 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=67.0
Q ss_pred CCCEEEEEcccccHHHHH-HHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 70 NAKKTIEIGVFTGYSLLL-TALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~-la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.++.|+-+|--. ..++. ++..+| .+|..+|+++..+....+..++.|+. +++.+.-|..+.+|+-. ..+|
T Consensus 152 ~gK~I~vvGDDD-Ltsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~kF 222 (354)
T COG1568 152 EGKEIFVVGDDD-LTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRKF 222 (354)
T ss_pred CCCeEEEEcCch-hhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----HhhC
Confidence 567899999433 33343 334444 48999999999999999999999984 48888889888777643 4799
Q ss_pred eEEEEeCCCc--CcHHHHHHHHccCCCC
Q 026547 149 DYAFVDADKV--NYWNYHERLMKLLKVG 174 (237)
Q Consensus 149 D~i~id~~~~--~~~~~~~~~~~~L~~g 174 (237)
|.++-|.+.. ....|+.+-...|+.-
T Consensus 223 DvfiTDPpeTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 223 DVFITDPPETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred CeeecCchhhHHHHHHHHhccHHHhcCC
Confidence 9998775421 1233444444566655
No 343
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.43 E-value=0.85 Score=38.58 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=49.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPED---GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.+|.-||+|. .+..++..+... .+|+++|.+++..+.+++ .|... . ...+..+. ....
T Consensus 7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~----------~~~a 67 (307)
T PRK07502 7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA----------VKGA 67 (307)
T ss_pred cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH----------hcCC
Confidence 5788898764 333333332212 389999999887665543 34211 1 11121111 1456
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAV 178 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 178 (237)
|+|++........++++.+.+.+++|++++
T Consensus 68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 888777665555566666666777776543
No 344
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.41 E-value=0.86 Score=39.91 Aligned_cols=84 Identities=21% Similarity=0.225 Sum_probs=51.5
Q ss_pred CEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCc
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPE--DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGS 147 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~ 147 (237)
++||-||| |..+...+..+.. ..+|+..|.+++..+.+..... .+++.++.|+.+. +..+ ...
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~l------i~~ 68 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVAL------IKD 68 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHH------Hhc
Confidence 57999999 4444433333211 3699999999887776655431 2688888887664 3333 256
Q ss_pred eeEEEEeCCCcCcHHHHHHHH
Q 026547 148 FDYAFVDADKVNYWNYHERLM 168 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~ 168 (237)
+|+|+.-.........++.|.
T Consensus 69 ~d~VIn~~p~~~~~~i~ka~i 89 (389)
T COG1748 69 FDLVINAAPPFVDLTILKACI 89 (389)
T ss_pred CCEEEEeCCchhhHHHHHHHH
Confidence 699986554444334444443
No 345
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.33 E-value=0.93 Score=38.96 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=57.7
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeC---CchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDV---NRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~---~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
.++.+||-+|+|. |..+..+|+.. +.+|++++. +++..+.++ +.|.. .+.....+..+ .. .
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~-~~-~------ 235 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE-VK-L------ 235 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh-hh-h------
Confidence 3567999998754 44566677765 458999987 455555443 34532 12111111111 11 1
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
...+|+||-.... ...+....+.|++||.+++-...
T Consensus 236 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 236 VGEFDLIIEATGV---PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred cCCCCEEEECcCC---HHHHHHHHHHccCCcEEEEEecC
Confidence 2579988754332 34677788999999998875443
No 346
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.23 E-value=0.61 Score=31.85 Aligned_cols=85 Identities=11% Similarity=0.036 Sum_probs=52.1
Q ss_pred EEEEcccccHHHHHHHhhCCC-C---CEEEEE-eCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 74 TIEIGVFTGYSLLLTALTIPE-D---GQIMAI-DVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 74 vLeiG~G~G~~~~~la~~~~~-~---~~v~~v-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
|.=||+ |..+..+++.+-. + .+|+.+ +.+++..+...+.+ + +.+...+..+.+ +.-
T Consensus 2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~----------~~a 62 (96)
T PF03807_consen 2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAA----------QEA 62 (96)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHH----------HHT
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhh----------ccC
Confidence 445665 5555555444321 2 588844 99998876655543 3 445554555554 346
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAV 178 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 178 (237)
|+||+........+.++.+ ..+.++.+++
T Consensus 63 dvvilav~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp SEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred CEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence 8999999888888888888 6666655554
No 347
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=92.19 E-value=0.86 Score=37.32 Aligned_cols=114 Identities=14% Similarity=0.169 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
+....++..+...+.... +..-.|+=.++..+++ +.-+.+.+|+.|+-.+..+++++. ..++++++.|..+.+
T Consensus 44 ~~l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l 116 (245)
T PF04378_consen 44 PALQPYLDAVRALNPDGE-LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGL 116 (245)
T ss_dssp GGGHHHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHH
T ss_pred HHHHHHHHHHHHhccCCC-cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhh
Confidence 344555655555554333 5555555556655655 467999999999999888888754 347999999999977
Q ss_pred HHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCC--CCeEEEE
Q 026547 136 DQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLK--VGGIAVY 179 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~--~gG~lv~ 179 (237)
..+. ++..+=-+|+||.. +..+....+.+.+.++ +.|++++
T Consensus 117 ~all---PP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i 162 (245)
T PF04378_consen 117 KALL---PPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI 162 (245)
T ss_dssp HHH----S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred hhhC---CCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 7664 22466779999974 4445555555554444 4676664
No 348
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.17 E-value=1.9 Score=34.16 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=45.1
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES 129 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 129 (237)
+..+|+-+|||. |......+...+ -++++.+|.+. ...+.+.+.+++.+..-+++.+..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 567899999974 333333222223 46899999772 334555666666554334554444
Q ss_pred cchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547 130 EALS-VLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 130 d~~~-~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
.... .+..+ ...+|+|+...+
T Consensus 99 ~i~~~~~~~~------~~~~D~Vi~~~d 120 (202)
T TIGR02356 99 RVTAENLELL------INNVDLVLDCTD 120 (202)
T ss_pred cCCHHHHHHH------HhCCCEEEECCC
Confidence 4322 22222 368999875543
No 349
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.14 E-value=0.64 Score=40.07 Aligned_cols=49 Identities=20% Similarity=0.070 Sum_probs=39.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCchHHHHHHHHHHhcC
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIP-------EDGQIMAIDVNRETYEIGLPVIKKAG 119 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~-------~~~~v~~vD~~~~~~~~a~~~~~~~~ 119 (237)
+-.++|||.|.|..+..+++.+. ...++..||+|++..+.-++.++...
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 35899999999999888776552 25689999999999888887776553
No 350
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.14 E-value=1 Score=39.74 Aligned_cols=103 Identities=19% Similarity=0.217 Sum_probs=60.7
Q ss_pred hcCCCEEEEEcc--cccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhc----CCCCcEEEEe----ccchHHHH
Q 026547 68 LVNAKKTIEIGV--FTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKA----GVDHKINFIE----SEALSVLD 136 (237)
Q Consensus 68 ~~~~~~vLeiG~--G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~v~~~~----~d~~~~~~ 136 (237)
..++.+||-+|. +.|..++.+|+.... ..+|+++|.+++.++.+++.+... |. ...++. .+..+.+.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHH
Confidence 345678888873 356677777876531 237999999999998888753211 21 112222 12222233
Q ss_pred HHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 137 QLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 137 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
.+. ....+|+|+..... ...+....+.++++|.+++
T Consensus 251 ~~t----~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 251 ELT----GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHh----CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence 221 12469988764322 3566777889998775543
No 351
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.09 E-value=0.76 Score=38.78 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=53.8
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
++++||-+|+|. |..++.+|+..+ ...|+++|.+++.++.+.+. . ++ |..+. . ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~------~~g~ 201 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P------RRDY 201 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c------CCCC
Confidence 566889888753 556666777654 33577888887766554431 1 11 11110 0 2568
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
|+||-.... ...++.+.+.|+++|.+++-..
T Consensus 202 Dvvid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 202 RAIYDASGD---PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CEEEECCCC---HHHHHHHHHhhhcCcEEEEEee
Confidence 988643322 3456778899999999987543
No 352
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.86 E-value=2.5 Score=36.06 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=58.4
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 66 LKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
+...++.+||-.|+| .|..+..+|+.. +.+|++++.+++..+.+++ .|.+. ++. ..+. .
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~---------~ 220 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGG--AYDT---------P 220 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecc--cccc---------C
Confidence 344567899999964 233455666664 4689999999887766555 45421 111 1111 0
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
.+.+|+++..... ...+....+.|++||.+++-..
T Consensus 221 ~~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 221 PEPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred cccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 2457876643322 3467778899999999987554
No 353
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.86 E-value=2.1 Score=36.95 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=48.2
Q ss_pred CCCEEEEEcccc-cHHHH-HHHhhCCCCCEEEEEeCCc---------------------hHHHHHHHHHHhcCCCCcEEE
Q 026547 70 NAKKTIEIGVFT-GYSLL-LTALTIPEDGQIMAIDVNR---------------------ETYEIGLPVIKKAGVDHKINF 126 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~-~la~~~~~~~~v~~vD~~~---------------------~~~~~a~~~~~~~~~~~~v~~ 126 (237)
...+||-+|||. |.... .|++. + -++++.+|.+. ..++.+++.+++.+..-+++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-G-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-G-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-C-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 457899999974 33222 33332 2 35899999864 244566677777665445666
Q ss_pred Eeccch-HHHHHHhhcCCCCCceeEEEEeCC
Q 026547 127 IESEAL-SVLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 127 ~~~d~~-~~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
+..+.. +.+..+ ...+|+|+...+
T Consensus 101 ~~~~~~~~~~~~~------~~~~DlVid~~D 125 (338)
T PRK12475 101 VVTDVTVEELEEL------VKEVDLIIDATD 125 (338)
T ss_pred EeccCCHHHHHHH------hcCCCEEEEcCC
Confidence 666543 233333 367999876543
No 354
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=91.85 E-value=2.2 Score=36.22 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=61.8
Q ss_pred HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547 65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
.....++.+||-.|+|. |..++.+|+.. +.+|+++..+++..+.+++ .+...-+.....+..+.+..+.
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---- 223 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT---- 223 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----
Confidence 34455677999998764 66777788874 5789999888777665543 3422112222223223333331
Q ss_pred CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
....+|+++-.... ...+..+++.|+++|.++.
T Consensus 224 ~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 224 DGEGADVVIDATGN---PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 12568999743221 3456778889999998875
No 355
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=91.68 E-value=2.9 Score=36.14 Aligned_cols=104 Identities=19% Similarity=0.291 Sum_probs=59.9
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec--cchHHHHHHhhcC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES--EALSVLDQLLKDS 142 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~ 142 (237)
+...++.+||-+|+|. |..+..+|+... ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~--- 253 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT--- 253 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh---
Confidence 3456678999998642 334556677653 2379999999888776644 354221221111 1222222221
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT 182 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 182 (237)
.+.+|+|+-.... ...+....+.|+++ |.++.-..
T Consensus 254 --~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 254 --DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred --CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEcc
Confidence 2468988643221 34667777899887 88776543
No 356
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.68 E-value=2.7 Score=35.90 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=60.5
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
+...++.+||-.|+|. |..++.+++.. +. +|++++.+++..+.+++ .|.+.-+.....+..+.+..+.
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~---- 237 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT---- 237 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----
Confidence 3445667888887532 33445566654 44 89999988887776644 3532212222223333333221
Q ss_pred CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
....+|+++-... ....++.+++.|+++|.++.-..
T Consensus 238 ~~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 238 GGGGVDVSFDCAG---VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCCCCEEEECCC---CHHHHHHHHHhccCCCEEEEEcc
Confidence 1245999864332 13467778899999998887543
No 357
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.56 E-value=1.2 Score=34.19 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=58.5
Q ss_pred EcccccHHHHHHHhhCCCCCEEEEE--eCCchHHHH---HHHHHHhcCCCCcEEEE-eccchHHHHHHhhcCCCCCceeE
Q 026547 77 IGVFTGYSLLLTALTIPEDGQIMAI--DVNRETYEI---GLPVIKKAGVDHKINFI-ESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 77 iG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~---a~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
+|=|.=..++.|++......++++. |-..+..+. +..+++.... ..+.++ --|+.+.-.... .....||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~---~~~~~FDr 78 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFR---LKNQRFDR 78 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCccccccc---ccCCcCCE
Confidence 4555556777888877644555554 443333322 3345544422 124443 346655433321 12578999
Q ss_pred EEEeCCCcC----------------cHHHHHHHHccCCCCeEEEEe
Q 026547 151 AFVDADKVN----------------YWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 151 i~id~~~~~----------------~~~~~~~~~~~L~~gG~lv~~ 180 (237)
|+.+.++.. ...||+.+.++|+++|.|.+.
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 987754322 357888999999999998875
No 358
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=91.44 E-value=0.59 Score=37.57 Aligned_cols=64 Identities=11% Similarity=-0.020 Sum_probs=46.5
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
+......-|.|||.|.|..+..+..+- -.++..+|.++.++.-.+-..+.+. .+..++++|++.
T Consensus 46 A~~~~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR 109 (326)
T KOG0821|consen 46 AGNLTNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR 109 (326)
T ss_pred ccccccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence 334456789999999999999998753 4589999999988765554443333 357777777754
No 359
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.38 E-value=0.57 Score=34.94 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=54.3
Q ss_pred EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCC----C-cEEEEecc-chHHHHHHhhcCCCCC
Q 026547 74 TIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVD----H-KINFIESE-ALSVLDQLLKDSENEG 146 (237)
Q Consensus 74 vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~-~v~~~~~d-~~~~~~~~~~~~~~~~ 146 (237)
|+-+|+ |..+..+|..+. .+.+|+.+...+ .++. +++.|+. . ...+.... ....... ..
T Consensus 1 I~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 66 (151)
T PF02558_consen 1 ILIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSAD-------AG 66 (151)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHH-------HS
T ss_pred CEEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhc-------cC
Confidence 345566 555555554441 266899999776 4443 3333321 1 11111111 1011011 38
Q ss_pred ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEE-EeCc
Q 026547 147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAV-YDNT 182 (237)
Q Consensus 147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv-~~~~ 182 (237)
+||+||+........+.++.+.+.+.+++.++ +.|-
T Consensus 67 ~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 67 PYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp TESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred CCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCC
Confidence 99999999887788899999999999996554 4554
No 360
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=91.23 E-value=2.5 Score=36.54 Aligned_cols=102 Identities=21% Similarity=0.240 Sum_probs=59.3
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
....++.+||-.|+|. |..++.++++.+ ...+++++.+++..+.+++ .|...-+.....+..+.+..+.
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----- 251 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT----- 251 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----
Confidence 3345677888888643 555666777754 3369999998877665544 3432111111112222233321
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
...+|+|+-.... ...+...++.|+++|.++.-
T Consensus 252 ~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 252 GGGVDYALDTTGV---PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCCCcEEEECCCC---cHHHHHHHHHhccCCEEEEe
Confidence 2568988643322 24567788899999988863
No 361
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=91.22 E-value=4.5 Score=34.20 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=61.0
Q ss_pred HHhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccchHHHHHHhhcC
Q 026547 65 LLKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEALSVLDQLLKDS 142 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~ 142 (237)
.+...++.+||-.|+| .|..++.+|+... +.+|++++.+++..+.+++ .|.+.-+.... .+..+.+...
T Consensus 157 ~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~---- 227 (338)
T PRK09422 157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK---- 227 (338)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh----
Confidence 3445667789888853 2445556666532 5689999999888777643 35421111111 1112222222
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
.+.+|.++++... ...++.+++.|+++|.++.-
T Consensus 228 --~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 228 --TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred --cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEEE
Confidence 2357877766532 45678888999999988753
No 362
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.17 E-value=1.1 Score=39.27 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=59.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC------
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN------ 144 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~------ 144 (237)
.+|--+|- ||.++.+|-.+.. +.+|+|+|+++..++..++ | +.....-+....+....+.+.-
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence 45666665 5655555444432 5799999999988765543 2 1222222222223322221100
Q ss_pred --CCceeEEEEeCC------C-c---CcHHHHHHHHccCCCCeEEEEeCcCCCCc
Q 026547 145 --EGSFDYAFVDAD------K-V---NYWNYHERLMKLLKVGGIAVYDNTLWGGT 187 (237)
Q Consensus 145 --~~~~D~i~id~~------~-~---~~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 187 (237)
...-|++++..+ . . ......+.+.+.|++|-++++....+.|.
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT 134 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT 134 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence 124566655421 1 1 12345566678999999999999888773
No 363
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=91.13 E-value=3.1 Score=36.55 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=60.5
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccchHHHHHHhhcCC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEALSVLDQLLKDSE 143 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~ 143 (237)
+...++++||-.|+|. |..++.+|+... ...|+.+|.+++..+.+++ .|.. .+.... .+..+.+..+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~---- 250 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL---- 250 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc----
Confidence 3455677887777643 334556677654 3346677888777776665 3532 111111 12223333321
Q ss_pred CCCceeEEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEeCc
Q 026547 144 NEGSFDYAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
....+|+++--..... ....++...+.+++||.+++-.+
T Consensus 251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 1246898864333221 12467888899999999988554
No 364
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.08 E-value=4.9 Score=32.03 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=47.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH--HHHhhc-CCCC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL--DQLLKD-SENE 145 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~-~~~~ 145 (237)
++++||-.|++ |..+..+++.+ ..+.+|++++.+++..+...+.+... .+++++.+|..+.- ....++ ....
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46789999975 55555555444 23679999999887665554444332 24788888765421 111110 0002
Q ss_pred CceeEEEEeC
Q 026547 146 GSFDYAFVDA 155 (237)
Q Consensus 146 ~~~D~i~id~ 155 (237)
+++|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 5678887654
No 365
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.07 E-value=3.8 Score=34.90 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=59.4
Q ss_pred HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc---hHHHHHHh
Q 026547 65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA---LSVLDQLL 139 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~ 139 (237)
.+...++.+||-.|+|. |..++.+|+..+ .+ |+.++.+++..+.+++ .|...-+.....+. .+.+....
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 34455677888877654 556677787754 44 8899888777665544 24321112111121 12222221
Q ss_pred hcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
....+|+|+-.... ...+...++.|+++|.++.-
T Consensus 231 ----~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 231 ----GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred ----CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 12569988643321 23567778899999988754
No 366
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=91.06 E-value=6.2 Score=34.72 Aligned_cols=126 Identities=20% Similarity=0.212 Sum_probs=77.1
Q ss_pred ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDV-NRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
-.|....+-..++.+.++..++-..+|.+-.+..+...+..+.+|+..+. -.......+..+...|+ .+.++..+-.
T Consensus 53 gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~ 130 (386)
T PF01053_consen 53 GNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDL 130 (386)
T ss_dssp C-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSH
T ss_pred ccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhH
Confidence 45777777777888888888999999888876666555665778877764 33445566666666675 3556554333
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCCe--EEEEeCcCCCC
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVGG--IAVYDNTLWGG 186 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~gG--~lv~~~~~~~g 186 (237)
+.+.... .+..++||+...... ....++.+.++.+..| .+++||.+..+
T Consensus 131 ~~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 131 EALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp HHHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred HHHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 4443332 468999999864322 2344555655555544 66777775433
No 367
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=91.04 E-value=4 Score=34.69 Aligned_cols=102 Identities=21% Similarity=0.257 Sum_probs=57.7
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
...++.+||-.|+|. |..+..+++..+ ..+|++++.++...+.+++ .|.+.-+.....+....+..+.. .
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~----~ 233 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTD----G 233 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhC----C
Confidence 345567777776532 223445666543 2688889888766655543 35432233322332222333221 2
Q ss_pred CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
..+|+++ +.. .....++.+.+.|+++|.++.-
T Consensus 234 ~~~d~vl-d~~--g~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 234 RGVDVVI-EAV--GIPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCCEEE-ECC--CCHHHHHHHHHhccCCcEEEEe
Confidence 5699886 432 2234578888999999998753
No 368
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=90.80 E-value=3.7 Score=35.43 Aligned_cols=104 Identities=18% Similarity=0.272 Sum_probs=58.9
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec--cchHHHHHHhhcC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES--EALSVLDQLLKDS 142 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~ 142 (237)
+...++.+||-.|+|. |..+..+|+... ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 254 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT--- 254 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence 4456778999988642 224445666653 2389999999887776644 454221221111 1112222221
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT 182 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 182 (237)
.+.+|+++ |... ....+....+.+++| |.+++-..
T Consensus 255 --~~~~d~vi-d~~G--~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 255 --GGGVDYSF-ECTG--NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred --CCCCCEEE-ECCC--ChHHHHHHHHHhhcCCCEEEEECc
Confidence 23689775 3321 134566677888996 88876544
No 369
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.73 E-value=2.4 Score=37.17 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=67.6
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCc-EEEEeccchHHHHH
Q 026547 59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHK-INFIESEALSVLDQ 137 (237)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~ 137 (237)
+-+|..+.......+||-++=..|-.+++++.+-+ +.+--+--.....+.+++.+|+... ++++.. .+.+
T Consensus 33 e~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~~~-- 103 (378)
T PRK15001 33 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLDS--TADY-- 103 (378)
T ss_pred HHHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeecc--cccc--
Confidence 33444444432223799999999999999985422 2231122233556788888887543 454432 2222
Q ss_pred HhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCCeEEEEeC
Q 026547 138 LLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 138 ~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.+.+|+|++-.++.. ....+..+.+.|.+|+.+++-.
T Consensus 104 -------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 104 -------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred -------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 367999998877654 3456777778999999987643
No 370
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.63 E-value=4.8 Score=34.76 Aligned_cols=96 Identities=20% Similarity=0.210 Sum_probs=54.1
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
.++++||-.|+|. |..++.+|+.. +.+|++++.+++....+ .++.|.. .++.....+.+... .+.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~------~~~ 247 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAA------IGT 247 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhh------cCC
Confidence 3567888888742 33455667764 46788888776543222 2234532 22211111222222 135
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
+|+|| |... ....++...+.|++||.++.-.
T Consensus 248 ~D~vi-d~~g--~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 248 MDYII-DTVS--AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCEEE-ECCC--CHHHHHHHHHHhcCCcEEEEeC
Confidence 89887 4322 2346777889999999988644
No 371
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.54 E-value=3.9 Score=35.71 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=73.9
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHH-------HHHHhcCC-CCcEEEEeccchH--HHH
Q 026547 67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGL-------PVIKKAGV-DHKINFIESEALS--VLD 136 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-------~~~~~~~~-~~~v~~~~~d~~~--~~~ 136 (237)
...+.+...|+|+|.|......+.... ...=+|+++.....+.+. +.++.+|. .+.++.++++..+ ...
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence 355778999999999999888776654 556788888765554443 22333454 3567888988655 333
Q ss_pred HHhhcCCCCCceeEEEEeCCCcCcH--HHHHHHHccCCCCeEEEEeCcCC
Q 026547 137 QLLKDSENEGSFDYAFVDADKVNYW--NYHERLMKLLKVGGIAVYDNTLW 184 (237)
Q Consensus 137 ~~~~~~~~~~~~D~i~id~~~~~~~--~~~~~~~~~L~~gG~lv~~~~~~ 184 (237)
.+ ...-++||++....... --+++++..+++|..|+-.+.+.
T Consensus 268 eI------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 268 EI------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred HH------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccccc
Confidence 33 35678888876543322 22346778889999998877664
No 372
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=90.48 E-value=0.98 Score=37.27 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=44.5
Q ss_pred HHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHH
Q 026547 85 LLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYH 164 (237)
Q Consensus 85 ~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~ 164 (237)
++.+.+..+ ..+|+++|.++..++.|++ .|..+. ...+ .+. + ...|+|++..+.....+++
T Consensus 2 A~aL~~~g~-~~~v~g~d~~~~~~~~a~~----~g~~~~---~~~~-~~~---~-------~~~DlvvlavP~~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGP-DVEVYGYDRDPETLEAALE----LGIIDE---ASTD-IEA---V-------EDADLVVLAVPVSAIEDVL 62 (258)
T ss_dssp HHHHHHTTT-TSEEEEE-SSHHHHHHHHH----TTSSSE---EESH-HHH---G-------GCCSEEEE-S-HHHHHHHH
T ss_pred hHHHHhCCC-CeEEEEEeCCHHHHHHHHH----CCCeee---ccCC-HhH---h-------cCCCEEEEcCCHHHHHHHH
Confidence 345555433 6799999999998876654 244221 1111 122 1 4568998888777777888
Q ss_pred HHHHccCCCCeEE
Q 026547 165 ERLMKLLKVGGIA 177 (237)
Q Consensus 165 ~~~~~~L~~gG~l 177 (237)
+++.+.+++|+++
T Consensus 63 ~~~~~~~~~~~iv 75 (258)
T PF02153_consen 63 EEIAPYLKPGAIV 75 (258)
T ss_dssp HHHHCGS-TTSEE
T ss_pred HHhhhhcCCCcEE
Confidence 8888877776544
No 373
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.30 E-value=1.6 Score=36.64 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=53.3
Q ss_pred EEEEEcccccHHHH--HHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-----CcEEEEeccchHHHHHHhhcCCCC
Q 026547 73 KTIEIGVFTGYSLL--LTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-----HKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 73 ~vLeiG~G~G~~~~--~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
+|+-+|+|.-..++ .|++. +.+|+.++. ++..+..+ +.|+. .... ............ .
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~---g~~V~~~~r-~~~~~~~~----~~g~~~~~~~~~~~-~~~~~~~~~~~~------~ 66 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA---GRDVTFLVR-PKRAKALR----ERGLVIRSDHGDAV-VPGPVITDPEEL------T 66 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC---CCceEEEec-HHHHHHHH----hCCeEEEeCCCeEE-ecceeecCHHHc------c
Confidence 57788887654433 23332 457899987 55554433 22321 0011 011111111111 2
Q ss_pred CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEE-EeC
Q 026547 146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAV-YDN 181 (237)
Q Consensus 146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv-~~~ 181 (237)
..+|+||+........+.++.+.+.+.++.+++ +.|
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~n 103 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQN 103 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeC
Confidence 679999998877778888898988888887665 344
No 374
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.30 E-value=0.2 Score=35.53 Aligned_cols=40 Identities=20% Similarity=0.450 Sum_probs=28.0
Q ss_pred ceeEEEEeCC---------CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 147 SFDYAFVDAD---------KVNYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 147 ~~D~i~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
.||+|++-.. -.....+|+.+...|+|||.+|+.-=-|..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s 49 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS 49 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence 4899987643 233568999999999999999997665543
No 375
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.19 E-value=1.9 Score=36.90 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=65.2
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC-cee
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG-SFD 149 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~-~~D 149 (237)
..+++|+-||.|...+-|..+. ---+.++|+++..++.-+.++.. ..++.+|..+....-. .. .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence 4589999999999988887642 24689999999999888877632 3456667665543221 12 788
Q ss_pred EEEEeCCC----------------c-CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 150 YAFVDADK----------------V-NYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 150 ~i~id~~~----------------~-~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+++-..++ . .+.++.+ +...++| -++++.|+-
T Consensus 70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r-~I~~~~P-~~fv~ENV~ 118 (328)
T COG0270 70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIR-LIEQLRP-KFFVLENVK 118 (328)
T ss_pred EEEeCCCCcchhhcCcccCCcCccceeeHHHHH-HHHhhCC-CEEEEecCc
Confidence 88643211 1 1234433 4477888 888999885
No 376
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=90.10 E-value=1.9 Score=38.54 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=63.7
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF 152 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 152 (237)
++|.+|||.--.+..+-+.. --.|+.+|.|+-.++.....-.. -.+...+...|..... +.+++||.|+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~-------fedESFdiVI 119 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLV-------FEDESFDIVI 119 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhcc-------CCCcceeEEE
Confidence 89999998877666554432 34799999999888766554321 1234667777765542 3468999987
Q ss_pred EeC---------C----CcCcHHHHHHHHccCCCCeEEEE
Q 026547 153 VDA---------D----KVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 153 id~---------~----~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
.-+ . .......+..+.++|++||..+.
T Consensus 120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 321 1 11234567888899999997554
No 377
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.09 E-value=3.2 Score=36.85 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=56.3
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC-----CCC
Q 026547 72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS-----ENE 145 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-----~~~ 145 (237)
.+|.-||.|. .+..+|..+. .+.+|+++|.+++.++..+. |. +.+...+..+.+....+.+ ...
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 4677788754 3343443332 25689999999988764321 21 1111112222221110000 001
Q ss_pred CceeEEEEeCCCc----------CcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 146 GSFDYAFVDADKV----------NYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 146 ~~~D~i~id~~~~----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
+.-|+||+..+.. ......+.+.+.+++|.++|.......|
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 3568888775542 3445567777889998888777665444
No 378
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.07 E-value=1.6 Score=36.14 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=42.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIP----EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (237)
.+...++|.|||.|..+.+++..++ ....++.||...... .+-..++.......++=+..|+.++
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDL 85 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeecc
Confidence 3556899999999999999999884 257899999855333 2333333332112455566666653
No 379
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.06 E-value=5 Score=34.62 Aligned_cols=104 Identities=21% Similarity=0.331 Sum_probs=59.1
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec--cchHHHHHHhhcC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES--EALSVLDQLLKDS 142 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~ 142 (237)
....++.+||-+|+|. |..+..+|+... ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~--- 251 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT--- 251 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh---
Confidence 3455678999888642 334455677653 2379999998887776644 354221221111 1122222221
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT 182 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 182 (237)
...+|+|+-.... ...+...++.++++ |.++.-..
T Consensus 252 --~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 252 --GGGVDYSFECTGN---ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred --CCCCCEEEECCCC---hHHHHHHHHhcccCCCEEEEEcC
Confidence 2468988633221 34567778889885 88876443
No 380
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=89.96 E-value=8.3 Score=32.73 Aligned_cols=97 Identities=22% Similarity=0.150 Sum_probs=54.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 69 VNAKKTIEIGVFTGYSLLLTALTIP--EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
..+.+|+-+|+ |..+..+++.+. ...+|+.++.+++..+...+ ..|. .... ..+....+ .
T Consensus 176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~---~~g~----~~~~--~~~~~~~l-------~ 237 (311)
T cd05213 176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAK---ELGG----NAVP--LDELLELL-------N 237 (311)
T ss_pred ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH---HcCC----eEEe--HHHHHHHH-------h
Confidence 46789999998 555544444332 13589999998765533322 2232 2222 11222222 5
Q ss_pred ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
..|+||.-.....+...++...+....++.+++|-..
T Consensus 238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 6899988766555544455554444346788887654
No 381
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.95 E-value=5.3 Score=35.04 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=61.0
Q ss_pred EEEEEcc-cccH--HHHHHHhhCCCC---CEEEEEeC-CchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 73 KTIEIGV-FTGY--SLLLTALTIPED---GQIMAIDV-NRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 73 ~vLeiG~-G~G~--~~~~la~~~~~~---~~v~~vD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
.|+=+|- |+|- +..-+|.++.+. .-++|-|- -+.+.++.+.+..+.++.-...+-..|.......-.+. +-.
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~-fKk 181 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR-FKK 181 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH-HHh
Confidence 4555553 3333 333455555332 34566664 44666778887777664321222233443333221111 235
Q ss_pred CceeEEEEeCC--CcCcHHHHHHHH---ccCCCCeEEEEeCcC
Q 026547 146 GSFDYAFVDAD--KVNYWNYHERLM---KLLKVGGIAVYDNTL 183 (237)
Q Consensus 146 ~~~D~i~id~~--~~~~~~~~~~~~---~~L~~gG~lv~~~~~ 183 (237)
+.||+|++|.. +......|+++. +.++|+-+|++-|..
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 89999999965 333455666665 789999888776543
No 382
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=89.92 E-value=3.6 Score=35.44 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=56.0
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
..++.+||-.|+| .|..+..+++..+ ...+++++.+++..+.+++ .|...-+.....+..+.+.... ...
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~ 255 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGR 255 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCC
Confidence 3566778877654 3445566777653 2238999888776665533 3432111111122222222221 135
Q ss_pred ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
.+|+|+-... . ....+.+++.|+++|.++.
T Consensus 256 ~~d~vld~vg-~--~~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 256 GVDVVVEALG-K--PETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CCCEEEEeCC-C--HHHHHHHHHHHhcCCEEEE
Confidence 6999873322 2 1356778899999998875
No 383
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.92 E-value=3.9 Score=33.01 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=45.9
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES 129 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 129 (237)
...+|+-+|||. |...+..+...+ -++++.+|.+. ...+.+.+.+++.+..-+++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 467899999974 333333222233 46888886433 345566777776664445666555
Q ss_pred cch-HHHHHHhhcCCCCCceeEEEEeCC
Q 026547 130 EAL-SVLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 130 d~~-~~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
... +.+..+ ...+|+|+...+
T Consensus 99 ~i~~~~~~~~------~~~~DvVi~~~d 120 (228)
T cd00757 99 RLDAENAEEL------IAGYDLVLDCTD 120 (228)
T ss_pred eeCHHHHHHH------HhCCCEEEEcCC
Confidence 441 222232 257999986554
No 384
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=89.92 E-value=0.31 Score=34.49 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVN 104 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~ 104 (237)
+....+|||||.|...--|.. ++-+-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~---EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNS---EGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHh---CCCCccccccc
Confidence 455899999999987655544 35577899964
No 385
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=89.91 E-value=6.7 Score=32.19 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=80.9
Q ss_pred ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
.......++..+-..+++.. |..-+|+=..+..+.+. .-++..+|+.|+-....+++|+ ...++++..+|...
T Consensus 73 lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~ 145 (279)
T COG2961 73 LPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFL 145 (279)
T ss_pred chHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHH
Confidence 34556666666666666555 88888888888777763 5699999999999998898886 24579999999888
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCC---cCcHHHHHHHHccCC--CCeEEEE
Q 026547 134 VLDQLLKDSENEGSFDYAFVDADK---VNYWNYHERLMKLLK--VGGIAVY 179 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~--~gG~lv~ 179 (237)
.+.... ++.++=-+|+||.+- ..+....+.+.+.++ ++|+.++
T Consensus 146 ~l~a~L---PP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai 193 (279)
T COG2961 146 ALKAHL---PPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI 193 (279)
T ss_pred HHhhhC---CCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence 666543 234667899999753 345555555544443 4566654
No 386
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=89.87 E-value=1.1 Score=37.80 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=62.2
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF 152 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 152 (237)
+++|+-||.|..++-+..+. --.+.++|+++...+.-+.++. ....+|+.+...... ...+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-----~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-----PKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-----HHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-----cccceEEE
Confidence 68999999999998887652 2478999999999988888872 778888877654421 11599987
Q ss_pred EeCCCc---------------C--cHHHHHHHHccCCCCeEEEEeCcC
Q 026547 153 VDADKV---------------N--YWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 153 id~~~~---------------~--~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
...+++ + +.++++.+ +.++| -++++.|+.
T Consensus 67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~P-k~~~~ENV~ 112 (335)
T PF00145_consen 67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKP-KYFLLENVP 112 (335)
T ss_dssp EE---TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS--SEEEEEEEG
T ss_pred eccCCceEeccccccccccccchhhHHHHHHH-hhccc-eEEEecccc
Confidence 642211 1 23444444 56788 567778874
No 387
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=89.86 E-value=1.7 Score=36.34 Aligned_cols=87 Identities=22% Similarity=0.118 Sum_probs=50.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPE---DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
.+|+-+|. |..+.++++.+.. ...|++.|.+....+.+.+ .|..+ -..+ +..... ....
T Consensus 4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d----~~~~--~~~~~~------~~~a 65 (279)
T COG0287 4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID----ELTV--AGLAEA------AAEA 65 (279)
T ss_pred cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc----cccc--chhhhh------cccC
Confidence 46777775 5555555554432 3456777777665554433 23211 1111 110111 2567
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeE
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGI 176 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~ 176 (237)
|+|++..+.....++++++.+.|++|.+
T Consensus 66 D~VivavPi~~~~~~l~~l~~~l~~g~i 93 (279)
T COG0287 66 DLVIVAVPIEATEEVLKELAPHLKKGAI 93 (279)
T ss_pred CEEEEeccHHHHHHHHHHhcccCCCCCE
Confidence 8999888888888888888877877544
No 388
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.83 E-value=3.2 Score=35.01 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=45.1
Q ss_pred EEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 73 KTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 73 ~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
+||-+||| .|...+..+...+ -++++.+|.+. ...+.|.+++.+.+..-+++.+.++..
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 47888885 2333222222223 46888888533 234556666766665556777777765
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
+....+ ..+||+|+...+
T Consensus 80 ~~~~~f------~~~fdvVi~alD 97 (291)
T cd01488 80 DKDEEF------YRQFNIIICGLD 97 (291)
T ss_pred chhHHH------hcCCCEEEECCC
Confidence 543333 378999986544
No 389
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=89.74 E-value=1 Score=29.72 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=22.0
Q ss_pred cCCCEEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCc
Q 026547 69 VNAKKTIEIGVFTGYS-LLLTALTIPEDGQIMAIDVNR 105 (237)
Q Consensus 69 ~~~~~vLeiG~G~G~~-~~~la~~~~~~~~v~~vD~~~ 105 (237)
..|++||-||+-+|+- +..++.++.-++..++|-.+.
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 5678999999999994 444555555567877776543
No 390
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.71 E-value=3.8 Score=36.47 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=49.9
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCc
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGS 147 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~ 147 (237)
.++|+-+|+ |..+..+++.+.. +..|+.+|.+++..+..++.. ..+.++.||+.+. +... ....
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~-----~~~~ 297 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEE-----GIDE 297 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhc-----CCcc
Confidence 468999888 6777767666643 568999999998877665532 2367889998653 2222 2467
Q ss_pred eeEEEEeCC
Q 026547 148 FDYAFVDAD 156 (237)
Q Consensus 148 ~D~i~id~~ 156 (237)
+|.|++...
T Consensus 298 a~~vi~~~~ 306 (453)
T PRK09496 298 ADAFIALTN 306 (453)
T ss_pred CCEEEECCC
Confidence 888876543
No 391
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=89.42 E-value=2.5 Score=35.59 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=48.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEG 146 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~ 146 (237)
++++||-.| |+|+.+.++++.+- .+.+|++++.++.............+..++++++.+|..+. +... ..
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~~ 75 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV------VD 75 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH------Hc
Confidence 457888888 47888888777663 24588888876654322222211112234688999988653 2222 25
Q ss_pred ceeEEEEeC
Q 026547 147 SFDYAFVDA 155 (237)
Q Consensus 147 ~~D~i~id~ 155 (237)
.+|.||..+
T Consensus 76 ~~d~Vih~A 84 (322)
T PLN02662 76 GCEGVFHTA 84 (322)
T ss_pred CCCEEEEeC
Confidence 679887654
No 392
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.28 E-value=4.7 Score=35.79 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=56.4
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
..+++|+-+|+|. |......++.+ +++|+.+|.++...+.|+. .|. +.. +..+. . ..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~---v-------~~ 257 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEEA---V-------KE 257 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHHH---H-------cC
Confidence 3678999999986 44444555554 4689999999887776654 343 211 11111 1 45
Q ss_pred eeEEEEeCCCcCcHHHHHH-HHccCCCCeEEEEeC
Q 026547 148 FDYAFVDADKVNYWNYHER-LMKLLKVGGIAVYDN 181 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~-~~~~L~~gG~lv~~~ 181 (237)
.|+|+.... ....+.. ..+.+++||+++.-.
T Consensus 258 aDVVI~atG---~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 258 GDIFVTTTG---NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCEEEECCC---CHHHHHHHHHhcCCCCcEEEEeC
Confidence 798875432 2345554 378999999987654
No 393
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=89.26 E-value=8.3 Score=32.74 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=56.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
..++.+||-.|+| .|..++.+++.. +.+ |++++.+++..+.+++ .|...-+.....+..+.+..+. ..
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~ 228 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DG 228 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CC
Confidence 3456677766654 344556677765 444 8888777665554443 3532112222233333333331 13
Q ss_pred CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
..+|+++-.... ...+..+++.|+++|.++.-
T Consensus 229 ~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 229 EGVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence 568998753222 34567788899999988764
No 394
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=89.17 E-value=6.4 Score=33.38 Aligned_cols=102 Identities=21% Similarity=0.257 Sum_probs=58.8
Q ss_pred HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547 65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS 142 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 142 (237)
.+...++.+||-.|+|. |..+..+|+..+ .+ +++++.+++..+.++ ..|...-+...... .+.+....
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~--- 223 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT--- 223 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh---
Confidence 34455677898888755 556667777653 44 899988776655443 33532111211112 22222221
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
....+|+++-... ....+..+.+.|+++|.++.-
T Consensus 224 -~~~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 224 -EGRGADLVIEAAG---SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred -CCCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 1245999874321 134567788999999988764
No 395
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.06 E-value=1.8 Score=36.78 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEE-EeCc
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAV-YDNT 182 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv-~~~~ 182 (237)
...+|+|++....-+..+.++.+.+.+++..+++ +.|-
T Consensus 65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG 103 (307)
T COG1893 65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNG 103 (307)
T ss_pred cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCC
Confidence 4689999999888888899999999999998554 4554
No 396
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.06 E-value=8.7 Score=32.63 Aligned_cols=99 Identities=20% Similarity=0.174 Sum_probs=54.7
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
.++.+||-.|+|. |..+..+++... ..+|++++.+++..+.+++ .|....+.....+.. .+..+. ....
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCCC
Confidence 4566777777643 445666777653 2278888766655554443 343211111122222 222221 1357
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+|+|+-.... ......+.+.|+++|.++.-
T Consensus 232 vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 232 VDVVLEMSGN---PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCEEEECCCC---HHHHHHHHHHhccCCEEEEE
Confidence 9998743321 34567778899999988753
No 397
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.06 E-value=4.3 Score=36.13 Aligned_cols=94 Identities=15% Similarity=0.024 Sum_probs=56.6
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547 73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA 151 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i 151 (237)
+|+-+|+ |..+..+++.+. .+..|+.+|.+++.++.+++. . .+.++.||+.+...-... ....+|.|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~----~~~~~~gd~~~~~~l~~~---~~~~a~~v 69 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L----DVRTVVGNGSSPDVLREA---GAEDADLL 69 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c----CEEEEEeCCCCHHHHHHc---CCCcCCEE
Confidence 5777776 788888877664 256899999999887665542 1 267888887653211111 13678888
Q ss_pred EEeCCCcCcHHHHHHHHccCCCC-eEEE
Q 026547 152 FVDADKVNYWNYHERLMKLLKVG-GIAV 178 (237)
Q Consensus 152 ~id~~~~~~~~~~~~~~~~L~~g-G~lv 178 (237)
++...............+.+.+. .+++
T Consensus 70 i~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 70 IAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 87654333333333344555333 4444
No 398
>PRK08324 short chain dehydrogenase; Validated
Probab=88.97 E-value=4.6 Score=38.28 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=48.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~ 142 (237)
.++.||-+|++ |..+..+++.+. .+.+|+.++.+++..+.+.+.+... .++.++.+|..+. +....+.
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~- 495 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA- 495 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH-
Confidence 34788988853 444454444332 3579999999987776655544322 3577888776442 2222111
Q ss_pred CCCCceeEEEEeCC
Q 026547 143 ENEGSFDYAFVDAD 156 (237)
Q Consensus 143 ~~~~~~D~i~id~~ 156 (237)
.+.+|+|+....
T Consensus 496 --~g~iDvvI~~AG 507 (681)
T PRK08324 496 --FGGVDIVVSNAG 507 (681)
T ss_pred --cCCCCEEEECCC
Confidence 257899987654
No 399
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.91 E-value=2.5 Score=35.26 Aligned_cols=85 Identities=14% Similarity=0.064 Sum_probs=49.6
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547 73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA 151 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i 151 (237)
+|.-||+| ..+..++..+. .+.+|+++|.+++..+.+.+. |. +.....+. + . ....|+|
T Consensus 2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-~---~-------~~~aDlV 61 (279)
T PRK07417 2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL-S---L-------LKDCDLV 61 (279)
T ss_pred eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH-h---H-------hcCCCEE
Confidence 46667764 44444444332 245899999998877665442 32 11111111 1 1 1467888
Q ss_pred EEeCCCcCcHHHHHHHHccCCCCeEE
Q 026547 152 FVDADKVNYWNYHERLMKLLKVGGIA 177 (237)
Q Consensus 152 ~id~~~~~~~~~~~~~~~~L~~gG~l 177 (237)
++..+.....+.++.+.+.++++.++
T Consensus 62 ilavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 62 ILALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 88877666667777777777776433
No 400
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.89 E-value=17 Score=32.49 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=41.9
Q ss_pred CCEEEEEc-ccccHHHH--HHHhhCC---CCCEEEEEeCCchH---HHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547 71 AKKTIEIG-VFTGYSLL--LTALTIP---EDGQIMAIDVNRET---YEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 71 ~~~vLeiG-~G~G~~~~--~la~~~~---~~~~v~~vD~~~~~---~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 141 (237)
++.++=+| +|+|-.|. .+|..+. .+.+|..++.++.. .+..+.+.+..++. +.. ..+..++...+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~-~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP--VEV-VYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc--eEc-cCCHHhHHHHHHH-
Confidence 45677778 67776554 3443322 24588888888753 33444444444542 211 1222233222221
Q ss_pred CCCCCceeEEEEeCC
Q 026547 142 SENEGSFDYAFVDAD 156 (237)
Q Consensus 142 ~~~~~~~D~i~id~~ 156 (237)
...+|+|++|..
T Consensus 297 ---~~~~DlVlIDt~ 308 (424)
T PRK05703 297 ---LRDCDVILIDTA 308 (424)
T ss_pred ---hCCCCEEEEeCC
Confidence 257999999954
No 401
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=88.84 E-value=8.7 Score=29.23 Aligned_cols=133 Identities=10% Similarity=0.032 Sum_probs=70.4
Q ss_pred EEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH--HHHhhcCCCCCceeE
Q 026547 74 TIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL--DQLLKDSENEGSFDY 150 (237)
Q Consensus 74 vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~~~D~ 150 (237)
|+-+| |+|..+..+++.+ ..+.+|+++-.+++..+. ..+++++.+|..+.- ... ....|.
T Consensus 1 I~V~G-atG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~a------l~~~d~ 63 (183)
T PF13460_consen 1 ILVFG-ATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAA------LKGADA 63 (183)
T ss_dssp EEEET-TTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHH------HTTSSE
T ss_pred eEEEC-CCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhh------hhhcch
Confidence 34455 5788887777665 235799999999885544 346999999987752 222 257899
Q ss_pred EEEeCCCcC-cHHHHHHHHccCC---CCeEEEEeCcCCCCcccCC-CCCCCccccchHHHHHHHHHHhhcCCCceEEee
Q 026547 151 AFVDADKVN-YWNYHERLMKLLK---VGGIAVYDNTLWGGTVAMS-EEQVPDHLRGGRQATLDLNRSLADDPRIQLSHV 224 (237)
Q Consensus 151 i~id~~~~~-~~~~~~~~~~~L~---~gG~lv~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 224 (237)
||....... .....+.+.+.++ ..-++++......+..... ....+..........++..+.+.++ ++.++++
T Consensus 64 vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~iv 141 (183)
T PF13460_consen 64 VIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKPIFPEYARDKREAEEALRES-GLNWTIV 141 (183)
T ss_dssp EEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCGGGHHHHHHHHHHHHHHHHS-TSEEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccceeeeccccCCCCCcccccccccchhhhHHHHHHHHHHHHhc-CCCEEEE
Confidence 887653211 1233333333332 3334555544432211110 0001111123344445555666554 7777665
No 402
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.83 E-value=5.3 Score=32.67 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
....++.+||-.|+|. |..+..+|+... .+ |++++.+++..+.+++ .|..+.+..... .. .
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~---~----- 155 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEA----LGPADPVAADTA---DE---I----- 155 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHH----cCCCccccccch---hh---h-----
Confidence 4455678899888765 556667777654 45 9999988887765554 231111110000 01 1
Q ss_pred CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
....+|+|+..... ...++...+.|+++|.++.
T Consensus 156 ~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 156 GGRGADVVIEASGS---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred cCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence 13579988754322 3456777889999998875
No 403
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.79 E-value=4.5 Score=33.81 Aligned_cols=92 Identities=12% Similarity=0.007 Sum_probs=53.0
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCC---CcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVD---HKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
+|+-+|+|.-. ..++..+. .+.+|+.++.+++..+..++ .|.. ..... .......... ...+
T Consensus 2 ~I~IiG~G~~G--~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~-~~~~~~~~~~-------~~~~ 67 (304)
T PRK06522 2 KIAILGAGAIG--GLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITV-PVLAADDPAE-------LGPQ 67 (304)
T ss_pred EEEEECCCHHH--HHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceee-cccCCCChhH-------cCCC
Confidence 57888886533 33333322 24589999987766554433 2321 11110 0000111111 2679
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAV 178 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 178 (237)
|+|++..........++.+.+.+.++..++
T Consensus 68 d~vila~k~~~~~~~~~~l~~~l~~~~~iv 97 (304)
T PRK06522 68 DLVILAVKAYQLPAALPSLAPLLGPDTPVL 97 (304)
T ss_pred CEEEEecccccHHHHHHHHhhhcCCCCEEE
Confidence 999998877777888899988888876554
No 404
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.78 E-value=13 Score=32.71 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=53.7
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHH------------HHHhcCCCCcEEEEeccchHHHHHHh
Q 026547 73 KTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLP------------VIKKAGVDHKINFIESEALSVLDQLL 139 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~~~~~~ 139 (237)
+|--+|+ ||.++..+..+.. +-.|+|+|+++..++..++ .+++.....|.++- .|... ..
T Consensus 2 kI~viGt--GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~---a~- 74 (414)
T COG1004 2 KITVIGT--GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEE---AV- 74 (414)
T ss_pred ceEEECC--chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHH---HH-
Confidence 3455666 5544433222221 3589999999998876653 22222222223321 12211 11
Q ss_pred hcCCCCCceeEEEEeCCCc----------CcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 140 KDSENEGSFDYAFVDADKV----------NYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~~~----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
..-|++|+..+.+ ......+.+.+.++..-++|+......|
T Consensus 75 ------~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG 125 (414)
T COG1004 75 ------KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG 125 (414)
T ss_pred ------hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Confidence 4567888753321 1234555566777777888887666544
No 405
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=88.73 E-value=4.8 Score=32.81 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=42.4
Q ss_pred EEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 73 KTIEIGVFTGYSLLLTALTI--PEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~--~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
+||-+|+| ..+..+++.+ ..-++++.+|.+. ...+.+.+++++.+..-+++.+..+.
T Consensus 1 kVlvvG~G--GlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVGAG--GIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred CEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 47888885 3333333322 1146888888643 22345566666665444566666665
Q ss_pred ---hHHHHHHhhcCCCCCceeEEEEeCC
Q 026547 132 ---LSVLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 132 ---~~~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
.++...+ ...||+|+...+
T Consensus 79 ~~~~~~~~~f------~~~~DvVi~a~D 100 (234)
T cd01484 79 GPEQDFNDTF------FEQFHIIVNALD 100 (234)
T ss_pred ChhhhchHHH------HhCCCEEEECCC
Confidence 2222222 378999986544
No 406
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.72 E-value=6 Score=28.40 Aligned_cols=86 Identities=13% Similarity=0.060 Sum_probs=53.4
Q ss_pred HHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547 63 AMLLKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 63 ~~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 141 (237)
..++.....++|+|+|.|.=. .+..++++ +..|+++|+++.. + + .-+++...|..+.--.+
T Consensus 6 ~~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~~---a-------~--~g~~~v~DDitnP~~~i--- 67 (129)
T COG1255 6 EYIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEKT---A-------P--EGLRFVVDDITNPNISI--- 67 (129)
T ss_pred HHHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEeccccc---C-------c--ccceEEEccCCCccHHH---
Confidence 345566677799999996544 34455553 5789999998871 1 1 23788888886643333
Q ss_pred CCCCCceeEEEEeCCCcCcHHHHHHHHc
Q 026547 142 SENEGSFDYAFVDADKVNYWNYHERLMK 169 (237)
Q Consensus 142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~ 169 (237)
-..-|+|+.--........+=.+.+
T Consensus 68 ---Y~~A~lIYSiRpppEl~~~ildva~ 92 (129)
T COG1255 68 ---YEGADLIYSIRPPPELQSAILDVAK 92 (129)
T ss_pred ---hhCccceeecCCCHHHHHHHHHHHH
Confidence 2677888865544443333333333
No 407
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=88.67 E-value=2.8 Score=35.53 Aligned_cols=95 Identities=18% Similarity=0.273 Sum_probs=56.4
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
++.+||-.|+|. |..+..+++..+ -.++++++.+++..+.+++ .+.. .++..+..+ +..+.. ....+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~---~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA---DKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc---cCCCc
Confidence 677888888765 556667777653 2278999988777664443 3432 222221111 112211 12459
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
|+++-.... ...++..++.|+++|.++.
T Consensus 233 d~vld~~g~---~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 233 DVVFEASGA---PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred cEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 998643321 3457778899999998885
No 408
>PLN02256 arogenate dehydrogenase
Probab=88.61 E-value=6.2 Score=33.46 Aligned_cols=89 Identities=18% Similarity=0.119 Sum_probs=49.5
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 66 LKLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
+......+|.-||+ |..+..++..+.. +.+|+++|.++. .+.+ ...|. .. ..+..+.+
T Consensus 31 ~~~~~~~kI~IIG~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~--------- 89 (304)
T PLN02256 31 LEKSRKLKIGIVGF--GNFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC--------- 89 (304)
T ss_pred hccCCCCEEEEEee--CHHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh---------
Confidence 33445668999997 5555555554432 358999998863 2222 22342 21 12222221
Q ss_pred CCceeEEEEeCCCcCcHHHHHHH-HccCCCCe
Q 026547 145 EGSFDYAFVDADKVNYWNYHERL-MKLLKVGG 175 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~-~~~L~~gG 175 (237)
....|+|++........++++.+ ...++++.
T Consensus 90 ~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~ 121 (304)
T PLN02256 90 EEHPDVVLLCTSILSTEAVLRSLPLQRLKRST 121 (304)
T ss_pred hCCCCEEEEecCHHHHHHHHHhhhhhccCCCC
Confidence 13468888877666666677766 45566655
No 409
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=88.55 E-value=4.4 Score=36.08 Aligned_cols=103 Identities=21% Similarity=0.303 Sum_probs=58.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH---hcCC-----CCcEEEEeccchHHHHHHhhc
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK---KAGV-----DHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~-----~~~v~~~~~d~~~~~~~~~~~ 141 (237)
++.+|--||. |+.++.+|..+..+-+|+++|++++.++..++-.. +.++ ..+..+ ..+. +.
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~-~~------- 73 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEI-EK------- 73 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCH-HH-------
Confidence 3456767765 77777777777656799999999988876552110 0000 001111 1111 11
Q ss_pred CCCCCceeEEEEeCCCc-------CcHHH---HHHHHccCCCCeEEEEeCcCCCC
Q 026547 142 SENEGSFDYAFVDADKV-------NYWNY---HERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 142 ~~~~~~~D~i~id~~~~-------~~~~~---~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
...-|++|+..+.. +.... .+.+.+.|++|.++|.......|
T Consensus 74 ---~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg 125 (425)
T PRK15182 74 ---IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPG 125 (425)
T ss_pred ---HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 15678888754322 22222 34566888998888887766544
No 410
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=88.55 E-value=5.3 Score=34.79 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=56.4
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec---cchHHHHHHhhcC
Q 026547 67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES---EALSVLDQLLKDS 142 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~ 142 (237)
....+.+||-.|+|. |..++.+|+..+ ..+|++++.+++..+.+++ .|....+..... +..+.+..+.
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~--- 271 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT--- 271 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc---
Confidence 344567888777632 223445666543 2379999988775544443 454221111111 2222232331
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
....+|+|+ +... .....++...+.|+++|.++.-
T Consensus 272 -~g~gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 272 -KGWGADIQV-EAAG-APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred -CCCCCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEE
Confidence 124689876 4422 2245677788899999998864
No 411
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.47 E-value=4 Score=29.84 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=48.2
Q ss_pred CCEEEEEccc-ccHHHH-HHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547 71 AKKTIEIGVF-TGYSLL-LTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES 129 (237)
Q Consensus 71 ~~~vLeiG~G-~G~~~~-~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 129 (237)
..+|+-+||| .|...+ .|++. + -++++-+|.+. ...+.+++.+.+....-+++.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~-G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~ 79 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS-G-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE 79 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH-T-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-C-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence 4589999996 344333 33332 2 46899998532 235667777777765556777777
Q ss_pred cc-hHHHHHHhhcCCCCCceeEEEEeCCC
Q 026547 130 EA-LSVLDQLLKDSENEGSFDYAFVDADK 157 (237)
Q Consensus 130 d~-~~~~~~~~~~~~~~~~~D~i~id~~~ 157 (237)
+. .+....+ .+.+|+|+.....
T Consensus 80 ~~~~~~~~~~------~~~~d~vi~~~d~ 102 (135)
T PF00899_consen 80 KIDEENIEEL------LKDYDIVIDCVDS 102 (135)
T ss_dssp HCSHHHHHHH------HHTSSEEEEESSS
T ss_pred cccccccccc------ccCCCEEEEecCC
Confidence 66 3334444 2578999865543
No 412
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.43 E-value=2.4 Score=37.31 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=52.8
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc---CCC-----CcEEEEec-cchHHHHHHhhcCCC
Q 026547 74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA---GVD-----HKINFIES-EALSVLDQLLKDSEN 144 (237)
Q Consensus 74 vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~-----~~v~~~~~-d~~~~~~~~~~~~~~ 144 (237)
|--||. |+.++.+|..+..+-+|+++|++++.++..++..... ++. .+.++... +..+.
T Consensus 3 I~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~---------- 70 (388)
T PRK15057 3 ITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA---------- 70 (388)
T ss_pred EEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh----------
Confidence 445555 5555554444333568999999999988776521100 000 01122111 11111
Q ss_pred CCceeEEEEeCCCc-----------CcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 145 EGSFDYAFVDADKV-----------NYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 145 ~~~~D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
...-|+|++..+.. ...+..+.+.+ +++|.++|.......|
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg 122 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG 122 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence 14568888764432 12344555666 6888887777666544
No 413
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.25 E-value=17 Score=32.91 Aligned_cols=101 Identities=16% Similarity=0.090 Sum_probs=54.4
Q ss_pred EEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHH---hcCCC-------C-cEEEEeccchHHHHHH
Q 026547 73 KTIEIGVFTGYSLLLTALTIPE---DGQIMAIDVNRETYEIGLPVIK---KAGVD-------H-KINFIESEALSVLDQL 138 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~---~~~~~-------~-~v~~~~~d~~~~~~~~ 138 (237)
+|.-+|+|..... +|..+.. +.+|+++|.+++.++..++-.. +.++. . +.. ...|..+.
T Consensus 3 ~I~ViG~GyvGl~--~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~---- 75 (473)
T PLN02353 3 KICCIGAGYVGGP--TMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKH---- 75 (473)
T ss_pred EEEEECCCHHHHH--HHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHH----
Confidence 5777877555443 3333221 3679999999998876553210 00100 0 011 11111111
Q ss_pred hhcCCCCCceeEEEEeCC--C----------c---CcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547 139 LKDSENEGSFDYAFVDAD--K----------V---NYWNYHERLMKLLKVGGIAVYDNTLWGG 186 (237)
Q Consensus 139 ~~~~~~~~~~D~i~id~~--~----------~---~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (237)
...-|++|+..+ . . ......+.+.+.|++|-++++......|
T Consensus 76 ------i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G 132 (473)
T PLN02353 76 ------VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (473)
T ss_pred ------HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence 145677776432 1 1 2345566667888988888888777655
No 414
>PRK06940 short chain dehydrogenase; Provisional
Probab=88.23 E-value=7.1 Score=32.22 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=50.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCcee
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGSFD 149 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~D 149 (237)
+.+|-.|+ |..+..+++.+..+.+|+.++.+++.++...+.++..+ .++.++.+|..+. +..+.+.-...+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 45676775 46888888777667899999998876665555554433 3577788776542 111111100136789
Q ss_pred EEEEeCC
Q 026547 150 YAFVDAD 156 (237)
Q Consensus 150 ~i~id~~ 156 (237)
.++..+.
T Consensus 79 ~li~nAG 85 (275)
T PRK06940 79 GLVHTAG 85 (275)
T ss_pred EEEECCC
Confidence 9987654
No 415
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.09 E-value=1.8 Score=37.30 Aligned_cols=101 Identities=11% Similarity=-0.010 Sum_probs=58.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh-cCCC------CcEEEEeccchHHHHHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK-AGVD------HKINFIESEALSVLDQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~------~~v~~~~~d~~~~~~~~~~~~ 142 (237)
...+|.-||+|.-..++ +..+...+.++.+..+++..+..++.-.. ..+. .++.+ ..|..+.
T Consensus 6 ~~mkI~IiGaGa~G~al--A~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a-------- 74 (341)
T PRK12439 6 REPKVVVLGGGSWGTTV--ASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEA-------- 74 (341)
T ss_pred CCCeEEEECCCHHHHHH--HHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHH--------
Confidence 44679999996655433 33222234677777888776655542100 0111 11111 1222211
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeE-EEEeCcC
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGI-AVYDNTL 183 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~-lv~~~~~ 183 (237)
....|+|++........+.++.+.+.++++.. +.+.+-+
T Consensus 75 --~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 75 --ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred --HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 25679999988877788889999888888764 4445433
No 416
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=88.01 E-value=7.5 Score=32.75 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=53.8
Q ss_pred CCCEEEEE--cc-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 70 NAKKTIEI--GV-FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 70 ~~~~vLei--G~-G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
.+..+|-+ |+ +.|..++.+|+.. +.+|++++.+++..+.+++ .|.+.-+.....+..+.+..+. ...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~ 211 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKL 211 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCC
Confidence 34455554 32 3455566677765 5689999988877766654 4542212222223323332221 124
Q ss_pred ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
.+|+++-.... .......+.++++|.++.-.
T Consensus 212 ~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 212 NATIFFDAVGG----GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CCcEEEECCCc----HHHHHHHHhhCCCCEEEEEE
Confidence 68988733221 22344568889999887643
No 417
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.94 E-value=7.2 Score=33.64 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=46.1
Q ss_pred CCCEEEEEcccc-cHHH-HHHHhhCCCCCEEEEEeCCc---------------------hHHHHHHHHHHhcCCCCcEEE
Q 026547 70 NAKKTIEIGVFT-GYSL-LLTALTIPEDGQIMAIDVNR---------------------ETYEIGLPVIKKAGVDHKINF 126 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~-~~la~~~~~~~~v~~vD~~~---------------------~~~~~a~~~~~~~~~~~~v~~ 126 (237)
...+||-+|||. |... .+|++. + -++++.+|.+. ...+.+++.+++.+..-+++.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a-G-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA-G-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-C-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 567899999974 3332 234432 2 46899999863 234556667766654434566
Q ss_pred EeccchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547 127 IESEALS-VLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 127 ~~~d~~~-~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
+..+... ....+ ...||+|+.-.+
T Consensus 101 ~~~~~~~~~~~~~------~~~~DlVid~~D 125 (339)
T PRK07688 101 IVQDVTAEELEEL------VTGVDLIIDATD 125 (339)
T ss_pred EeccCCHHHHHHH------HcCCCEEEEcCC
Confidence 6555432 22222 367999875433
No 418
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.87 E-value=1.6 Score=37.23 Aligned_cols=93 Identities=11% Similarity=-0.041 Sum_probs=59.3
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEE
Q 026547 74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFV 153 (237)
Q Consensus 74 vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~i 153 (237)
|+|+.||.|..++-+..+- --.+.++|+++...+..+.++. + .++.+|+.+....- ...+|+++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD------IPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEEe
Confidence 6899999999998886542 2246789999998888777752 1 44567877654321 246898875
Q ss_pred eCCC------------cC-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547 154 DADK------------VN-----YWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 154 d~~~------------~~-----~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
..+. .+ +.++++.+ +.++| -++++.|+.
T Consensus 66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~r~i-~~~~P-~~~v~ENV~ 110 (315)
T TIGR00675 66 GFPCQPFSIAGKRKGFEDTRGTLFFEIVRIL-KEKKP-KFFLLENVK 110 (315)
T ss_pred cCCCcccchhcccCCCCCchhhHHHHHHHHH-hhcCC-CEEEeeccH
Confidence 3211 01 22333333 55677 477888874
No 419
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.85 E-value=5.1 Score=33.50 Aligned_cols=96 Identities=15% Similarity=0.058 Sum_probs=54.2
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--------CCC---------CcEEEEeccchHH
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--------GVD---------HKINFIESEALSV 134 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~ 134 (237)
++|.-||+|.=..++....+.. +.+|+.+|.+++.++.+++.+++. .+. .++.+ ..|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence 4788888865443332222212 568999999999888877654221 111 12221 1222111
Q ss_pred HHHHhhcCCCCCceeEEEEeCCCc--CcHHHHHHHHccCCCCeEEEE
Q 026547 135 LDQLLKDSENEGSFDYAFVDADKV--NYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~ 179 (237)
...-|+|+...... ....+++.+.+.++++.+|+.
T Consensus 82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 15568888765432 235667778777777765543
No 420
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=87.78 E-value=8.1 Score=33.32 Aligned_cols=103 Identities=21% Similarity=0.349 Sum_probs=58.0
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec--cchHHHHHHhhcC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES--EALSVLDQLLKDS 142 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~ 142 (237)
+...++.+||-+|+|. |..+..+|+..+ ...|++++.+++..+.+++ .|....+..... +..+.+..+.
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~--- 250 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT--- 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh---
Confidence 3455677888887632 334445666653 2358888888877766643 354221222222 2222222221
Q ss_pred CCCCceeEEEEeCCCcCcHHHHHHHHccCC-CCeEEEEeC
Q 026547 143 ENEGSFDYAFVDADKVNYWNYHERLMKLLK-VGGIAVYDN 181 (237)
Q Consensus 143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~-~gG~lv~~~ 181 (237)
.+.+|+|+ +... ....+....+.|+ ++|.++.-.
T Consensus 251 --~~~~d~vi-d~~g--~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 251 --DGGVDYAF-EVIG--SADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred --CCCCcEEE-ECCC--CHHHHHHHHHHhccCCCEEEEEe
Confidence 25689887 3321 1356677788899 999888643
No 421
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=87.75 E-value=5.5 Score=33.75 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=56.6
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547 67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE 145 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 145 (237)
....+.+||-.|+|. |..+..+++.. +.+|+.++.+++..+.+++ .|.. .++...-.+....+.. .
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~----~ 226 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAH---HYIDTSKEDVAEALQE----L 226 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCc---EEecCCCccHHHHHHh----c
Confidence 455677899888532 33445566664 4589999988777666643 3532 1222211122222211 1
Q ss_pred CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
..+|+++ +.. .....++..++.|+++|.++.-
T Consensus 227 ~~~d~vi-~~~--g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 227 GGAKLIL-ATA--PNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CCCCEEE-ECC--CchHHHHHHHHHcccCCEEEEE
Confidence 3588887 321 1235677788999999988753
No 422
>PRK08655 prephenate dehydrogenase; Provisional
Probab=87.70 E-value=2.7 Score=37.63 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=44.6
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547 73 KTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA 151 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i 151 (237)
+|.-|| |.|..+..++..+.. +.+|++++.+++.... ...+.|. .+ ..+..+. ....|+|
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~---~a~~~gv----~~-~~~~~e~----------~~~aDvV 62 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE---VAKELGV----EY-ANDNIDA----------AKDADIV 62 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHH---HHHHcCC----ee-ccCHHHH----------hccCCEE
Confidence 566776 335555555544422 4589999988765422 1222232 11 1121111 1445777
Q ss_pred EEeCCCcCcHHHHHHHHccCCCCeE
Q 026547 152 FVDADKVNYWNYHERLMKLLKVGGI 176 (237)
Q Consensus 152 ~id~~~~~~~~~~~~~~~~L~~gG~ 176 (237)
++..+.....+.++.+.+.+++|.+
T Consensus 63 Ilavp~~~~~~vl~~l~~~l~~~~i 87 (437)
T PRK08655 63 IISVPINVTEDVIKEVAPHVKEGSL 87 (437)
T ss_pred EEecCHHHHHHHHHHHHhhCCCCCE
Confidence 7766555555666666666666553
No 423
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.67 E-value=6.5 Score=33.20 Aligned_cols=95 Identities=23% Similarity=0.141 Sum_probs=52.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhc-CC--C--------CcEEEEeccchHHHHHH
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKA-GV--D--------HKINFIESEALSVLDQL 138 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~--~--------~~v~~~~~d~~~~~~~~ 138 (237)
-++|.-||+|.=..+ ++..+. .+.+|+.+|.+++.++.+++.+... +. . .++++ ..+..+.
T Consensus 4 ~~~I~vIGaG~mG~~--iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---- 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSG--IAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA---- 76 (311)
T ss_pred ccEEEEECCCHHHHH--HHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH----
Confidence 357888888653332 222221 2458999999998888777643211 11 0 11111 1122111
Q ss_pred hhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCCeEEE
Q 026547 139 LKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVGGIAV 178 (237)
Q Consensus 139 ~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~gG~lv 178 (237)
....|+|++...... ...++..+.+.++++.+++
T Consensus 77 ------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 77 ------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred ------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 156789987764432 4567777777666655443
No 424
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.62 E-value=13 Score=30.20 Aligned_cols=82 Identities=7% Similarity=0.010 Sum_probs=44.5
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD 141 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~ 141 (237)
.++.+|-.|.++ +..+..+++.+. .+.+|+.++.+....+..++..++.+ ..++.++..|..+. .....++
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 467899999762 445555554442 35688888654322222233323222 23577777776542 2222222
Q ss_pred CCCCCceeEEEEeC
Q 026547 142 SENEGSFDYAFVDA 155 (237)
Q Consensus 142 ~~~~~~~D~i~id~ 155 (237)
.+++|+++..+
T Consensus 85 ---~g~ld~lv~na 95 (257)
T PRK08594 85 ---VGVIHGVAHCI 95 (257)
T ss_pred ---CCCccEEEECc
Confidence 37799887553
No 425
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.61 E-value=7.4 Score=33.23 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=52.1
Q ss_pred CEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEecc
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPE--DGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIESE 130 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~--~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d 130 (237)
.+||-||. |..++.+++.+.- -.++..||++. ...+.|.+++.+.=..-.|.++..+
T Consensus 41 ~kiLviGA--GGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~k 118 (422)
T KOG2015|consen 41 CKILVIGA--GGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQK 118 (422)
T ss_pred CcEEEEcc--CcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecc
Confidence 67999987 5666766654421 22555555432 2234555554432222346778888
Q ss_pred chHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHH
Q 026547 131 ALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM 168 (237)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~ 168 (237)
+.+.-..+ -..||+|++..+.-....++..++
T Consensus 119 Iqd~~~~F------Yk~F~~iicGLDsIeaRRwIN~mL 150 (422)
T KOG2015|consen 119 IQDKPISF------YKRFDLIICGLDSIEARRWINGML 150 (422)
T ss_pred hhcCCHHH------HhhhceEEecccchhHHHHHHHHH
Confidence 88876665 378999997655433444555444
No 426
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=87.59 E-value=6.8 Score=32.77 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=56.9
Q ss_pred HhhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547 66 LKLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
....++.++|-.|.+ .|..+..++... +.+++.++.+++..+.++. .+....+.....+..+.+....
T Consensus 162 ~~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---- 231 (342)
T cd08266 162 ARLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT---- 231 (342)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh----
Confidence 334567789988875 455556666654 5689999888776655433 3432112111112222222221
Q ss_pred CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
....+|+++..... ..++.+++.++++|.++.-
T Consensus 232 ~~~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 232 GKRGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence 12468988754332 3456677888999987754
No 427
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=87.59 E-value=0.47 Score=38.00 Aligned_cols=101 Identities=7% Similarity=0.004 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547 56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135 (237)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (237)
-...+.+..+ ...++...+|+--|.|..+..+.+..+ +.+++++|.+|-+.+.|+-...+. ..+++..+.++..+.-
T Consensus 30 Vm~devl~~l-spv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~ 106 (303)
T KOG2782|consen 30 VMLDEVLDIL-SPVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIK 106 (303)
T ss_pred eehhhHHHHc-CCCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHH
Confidence 3344444443 344678999999999999999998877 789999999998877777655321 1122333334433322
Q ss_pred HHHhhcCCCCCceeEEEEeCCCcC
Q 026547 136 DQLLKDSENEGSFDYAFVDADKVN 159 (237)
Q Consensus 136 ~~~~~~~~~~~~~D~i~id~~~~~ 159 (237)
.-+++.+-.+.++|-|++|...+.
T Consensus 107 ~l~~~~gl~~~~vDGiLmDlGcSS 130 (303)
T KOG2782|consen 107 SLIADTGLLDVGVDGILMDLGCSS 130 (303)
T ss_pred HHHHHhCCCcCCcceEEeecCccc
Confidence 222222333578999998865544
No 428
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=87.59 E-value=1.3 Score=33.95 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=31.9
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 026547 67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLP 113 (237)
Q Consensus 67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 113 (237)
...+|.+|+-+|.|. |..++.++..+ +.+++.+|..+...+..+.
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLES 61 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhc
Confidence 345788999999986 55677788876 4799999998877665544
No 429
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=87.52 E-value=5.4 Score=34.34 Aligned_cols=103 Identities=22% Similarity=0.290 Sum_probs=58.1
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 66 LKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
....++.+||-.|+| .|..+..+++..+ ..+|++++.+++..+.++ ..|....+.....+..+.+..+. .
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~----~~g~~~vv~~~~~~~~~~l~~~~----~ 248 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELAR----RFGATHTVNASEDDAVEAVRDLT----D 248 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHH----HhCCeEEeCCCCccHHHHHHHHc----C
Confidence 445567788888764 3556667777653 224899988877665553 33532111111112222232221 1
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
...+|+++-.. .. ...++..++.|+++|.++.-
T Consensus 249 ~~~vd~vld~~-~~--~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 249 GRGADYAFEAV-GR--AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CCCCCEEEEcC-CC--hHHHHHHHHHhhcCCeEEEE
Confidence 25699876322 21 24567788899999988753
No 430
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.44 E-value=5.5 Score=33.53 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=56.0
Q ss_pred CCCEEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhc-CC
Q 026547 70 NAKKTIEIGVFTGY---SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKD-SE 143 (237)
Q Consensus 70 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~-~~ 143 (237)
.++.||-.|.|.|. .++.+|+. ++++...|++++......+.+++.| ++....+|..+ .+...+++ ..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 56789999999987 35556653 6689999999999988888888776 57778877654 22222111 11
Q ss_pred CCCceeEEEEeC
Q 026547 144 NEGSFDYAFVDA 155 (237)
Q Consensus 144 ~~~~~D~i~id~ 155 (237)
..+..|+++-++
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 257899988664
No 431
>PRK08507 prephenate dehydrogenase; Validated
Probab=87.40 E-value=2.8 Score=34.76 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=50.4
Q ss_pred EEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547 73 KTIEIGVFTGYSLLLTALTIPED---GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
+|.-||+ |..+..++..+... .+|+++|.+++..+.++ +.|... . ..+. ... ...|
T Consensus 2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~g~~~---~-~~~~----~~~-------~~aD 60 (275)
T PRK08507 2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----ELGLVD---E-IVSF----EEL-------KKCD 60 (275)
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HCCCCc---c-cCCH----HHH-------hcCC
Confidence 4666776 55555555444322 37999999988766543 234311 1 1121 111 2279
Q ss_pred EEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547 150 YAFVDADKVNYWNYHERLMKLLKVGGIAV 178 (237)
Q Consensus 150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv 178 (237)
+||+........+.++.+.+ ++++.+++
T Consensus 61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 61 VIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred EEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 99988877777788888877 77766444
No 432
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.32 E-value=2.6 Score=38.88 Aligned_cols=93 Identities=9% Similarity=-0.011 Sum_probs=57.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCce
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGSF 148 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~ 148 (237)
.+++-+|+ |..+..+++.+.+ +..++.+|.+++..+.+++ .| ...+.||+.+. +.+. +-++.
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a-----~i~~a 482 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLA-----HLDCA 482 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhc-----Ccccc
Confidence 56777777 6666677766542 4589999999998877764 23 67899998763 2222 24688
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
|.+++...........-.+.+...|+..++.
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence 8777654322212222223344566665554
No 433
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=87.24 E-value=9.9 Score=33.23 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=45.4
Q ss_pred CCCEEEEEcccc-cHHHH-HHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEe
Q 026547 70 NAKKTIEIGVFT-GYSLL-LTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIE 128 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~-~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~ 128 (237)
...+||-+|||. |...+ ++++ .+ -++++.+|.+. ...+.+++.+++.+..-+++.+.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~-~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLAS-AG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cC-CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 566899999974 33333 3333 23 46899999752 33456667776665443455555
Q ss_pred ccchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547 129 SEALS-VLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 129 ~d~~~-~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
..... ....+ ...+|+|+...+
T Consensus 118 ~~i~~~~~~~~------~~~~DlVid~~D 140 (370)
T PRK05600 118 ERLTAENAVEL------LNGVDLVLDGSD 140 (370)
T ss_pred eecCHHHHHHH------HhCCCEEEECCC
Confidence 44322 22222 267999865443
No 434
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.14 E-value=13 Score=31.80 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=50.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH--H----HHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL--D----QLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~~ 142 (237)
..+.||-.|+. |..+..+++.+ ..+.+|+.++.+++.++...+.++..+ .++.++.+|..+.- . ...+.
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~- 82 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE- 82 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH-
Confidence 45688888864 44455554444 236799999998887777766666555 35777888864421 1 11111
Q ss_pred CCCCceeEEEEeCC
Q 026547 143 ENEGSFDYAFVDAD 156 (237)
Q Consensus 143 ~~~~~~D~i~id~~ 156 (237)
.+++|.++....
T Consensus 83 --~g~iD~lInnAg 94 (334)
T PRK07109 83 --LGPIDTWVNNAM 94 (334)
T ss_pred --CCCCCEEEECCC
Confidence 357899886643
No 435
>PRK07063 short chain dehydrogenase; Provisional
Probab=87.12 E-value=6.9 Score=31.72 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=51.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~ 142 (237)
+++++|-.|+.. ..+..+++.+. .+.+|+.++.+++..+...+.+...+...++.++.+|..+. +....+.
T Consensus 6 ~~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~- 83 (260)
T PRK07063 6 AGKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA- 83 (260)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH-
Confidence 467899999754 44555554442 36799999998887776666665532234677888886542 2222111
Q ss_pred CCCCceeEEEEeCC
Q 026547 143 ENEGSFDYAFVDAD 156 (237)
Q Consensus 143 ~~~~~~D~i~id~~ 156 (237)
.+.+|.++..+.
T Consensus 84 --~g~id~li~~ag 95 (260)
T PRK07063 84 --FGPLDVLVNNAG 95 (260)
T ss_pred --hCCCcEEEECCC
Confidence 357899886543
No 436
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=87.12 E-value=8.7 Score=31.62 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=59.1
Q ss_pred HHhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc---chHHHHHHh
Q 026547 65 LLKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE---ALSVLDQLL 139 (237)
Q Consensus 65 l~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~ 139 (237)
.....++.+||-.|+ +.|..+..+++.. +.+|++++.+++..+.+++ .|.. .++..+ ..+.+..+.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~ 201 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREIT 201 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHc
Confidence 344556788999984 4566677777775 5689999888776665533 3532 222222 222222221
Q ss_pred hcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 140 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
....+|+++-... . ......++.++++|.++.
T Consensus 202 ----~~~~~d~vl~~~~-~---~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 202 ----GGRGVDVVYDGVG-K---DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred ----CCCCeeEEEECCC-c---HhHHHHHHhhccCcEEEE
Confidence 1256999874322 1 355667788999998874
No 437
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=87.11 E-value=4.4 Score=34.20 Aligned_cols=79 Identities=13% Similarity=0.133 Sum_probs=48.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEG 146 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~ 146 (237)
++++||-.| |+|+.+.++++.+. .+.+|+++..++.............+...+++++.+|..+. +... ..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~------~~ 76 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA------ID 76 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH------Hc
Confidence 357889888 67888888776653 35688877766654433322222223234688899987663 2332 24
Q ss_pred ceeEEEEeC
Q 026547 147 SFDYAFVDA 155 (237)
Q Consensus 147 ~~D~i~id~ 155 (237)
.+|.|+..+
T Consensus 77 ~~d~vih~A 85 (325)
T PLN02989 77 GCETVFHTA 85 (325)
T ss_pred CCCEEEEeC
Confidence 578887654
No 438
>PRK05854 short chain dehydrogenase; Provisional
Probab=87.08 E-value=7.3 Score=32.90 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=50.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~ 142 (237)
.++.+|-.|+..| .+..+++.+. .+.+|+.+..+++..+.+.+.+.......++.++.+|..+. ...+.+.
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~- 90 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE- 90 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh-
Confidence 4678998887654 4455554442 36799999988877766666554432223578888886542 1222211
Q ss_pred CCCCceeEEEEeC
Q 026547 143 ENEGSFDYAFVDA 155 (237)
Q Consensus 143 ~~~~~~D~i~id~ 155 (237)
.+++|+++.++
T Consensus 91 --~~~iD~li~nA 101 (313)
T PRK05854 91 --GRPIHLLINNA 101 (313)
T ss_pred --CCCccEEEECC
Confidence 36789988664
No 439
>PRK06949 short chain dehydrogenase; Provisional
Probab=87.07 E-value=8.5 Score=31.03 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=51.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~ 142 (237)
.+++||-+| |+|..+..+++.+. .+.+|+.++.+++.++.....++..+ .++.++.+|..+. +....+.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~- 83 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETE- 83 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh-
Confidence 467889888 55666666665553 35689999999887776666655443 3577888776432 2222111
Q ss_pred CCCCceeEEEEeCC
Q 026547 143 ENEGSFDYAFVDAD 156 (237)
Q Consensus 143 ~~~~~~D~i~id~~ 156 (237)
.+++|.++....
T Consensus 84 --~~~~d~li~~ag 95 (258)
T PRK06949 84 --AGTIDILVNNSG 95 (258)
T ss_pred --cCCCCEEEECCC
Confidence 357898876543
No 440
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.70 E-value=2.6 Score=35.90 Aligned_cols=101 Identities=20% Similarity=0.126 Sum_probs=60.9
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
..++++|--+|.| -|..+..+|+++ +.+|++||-+...-+. .++..|-+..+.+. . -.+.+..+ .+
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkee---a~~~LGAd~fv~~~-~-d~d~~~~~------~~ 245 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEE---AIKSLGADVFVDST-E-DPDIMKAI------MK 245 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHH---HHHhcCcceeEEec-C-CHHHHHHH------HH
Confidence 4466777666653 678889999998 4799999988754443 44445643222222 1 22444444 24
Q ss_pred ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
..|.++... ..-....++.+.++||++|.+|+-.+
T Consensus 246 ~~dg~~~~v-~~~a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 246 TTDGGIDTV-SNLAEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred hhcCcceee-eeccccchHHHHHHhhcCCEEEEEeC
Confidence 556553221 11123446777899999999988554
No 441
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.69 E-value=18 Score=30.80 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=44.2
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHH-HHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYE-IGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG 146 (237)
Q Consensus 69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 146 (237)
..+.+|.-||+|. |....+.+...+-..++..+|++++.++ .+...........++.+..++..+ + .
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~----~-------~ 72 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD----C-------K 72 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH----h-------C
Confidence 3567999999976 5544444333332348999999887653 333333322222345555444322 2 6
Q ss_pred ceeEEEEeCC
Q 026547 147 SFDYAFVDAD 156 (237)
Q Consensus 147 ~~D~i~id~~ 156 (237)
.-|+|++.+.
T Consensus 73 ~adivIitag 82 (315)
T PRK00066 73 DADLVVITAG 82 (315)
T ss_pred CCCEEEEecC
Confidence 7789988654
No 442
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=86.67 E-value=9.7 Score=32.62 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=54.6
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch---HHHHHHhhcCCC
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL---SVLDQLLKDSEN 144 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~~~~ 144 (237)
++.+||-.|+|. |..+..+|+.. +. +|++++.+++..+.++ +.|...-+.....+.. ..+..+. .
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----G 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----C
Confidence 567888887532 22345566665 34 8999998877665543 3454221221111111 1122221 1
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
...+|+++-.... ...++..++.|+++|.++.-
T Consensus 247 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 247 GRGADVVIEASGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence 2569988743221 34567778999999998864
No 443
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.56 E-value=7.2 Score=31.50 Aligned_cols=84 Identities=8% Similarity=0.102 Sum_probs=52.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhc-CCCC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKD-SENE 145 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~-~~~~ 145 (237)
.+++||-.|. +|..+..+++.+. .+.+|+.++.+++..+...+.++..+ .++.++.+|..+. +..+.++ ....
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678999995 5666666666553 36799999998877766666665544 3477787776542 1111110 0013
Q ss_pred CceeEEEEeCC
Q 026547 146 GSFDYAFVDAD 156 (237)
Q Consensus 146 ~~~D~i~id~~ 156 (237)
+++|.++..+.
T Consensus 86 ~~~d~li~~ag 96 (255)
T PRK07523 86 GPIDILVNNAG 96 (255)
T ss_pred CCCCEEEECCC
Confidence 57898887643
No 444
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=86.43 E-value=7.1 Score=31.62 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=51.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--H----HHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--L----DQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~----~~~~~~~ 142 (237)
+++++|-.| |+|..+..+++.+. .+.+|+.++.+++..+...+.+...+ .++.++.+|..+. + ....+.
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~- 86 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER- 86 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH-
Confidence 467899999 46666676666553 35689999998877776666655433 3577888887642 2 222111
Q ss_pred CCCCceeEEEEeC
Q 026547 143 ENEGSFDYAFVDA 155 (237)
Q Consensus 143 ~~~~~~D~i~id~ 155 (237)
.+++|.|+..+
T Consensus 87 --~~~id~vi~~a 97 (259)
T PRK08213 87 --FGHVDILVNNA 97 (259)
T ss_pred --hCCCCEEEECC
Confidence 25789987654
No 445
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.38 E-value=11 Score=27.72 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=41.5
Q ss_pred EEEEEccc-ccHHHH-HHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 73 KTIEIGVF-TGYSLL-LTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 73 ~vLeiG~G-~G~~~~-~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
+|+-+||| .|.... .|++. + -++++.+|.+. ...+.+++.+++.+..-+++.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-G-v~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~ 78 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-G-VGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGI 78 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-CCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 47889996 333222 23332 2 35899998652 22445566666665433455555443
Q ss_pred hHHH-HHHhhcCCCCCceeEEEEeCCC
Q 026547 132 LSVL-DQLLKDSENEGSFDYAFVDADK 157 (237)
Q Consensus 132 ~~~~-~~~~~~~~~~~~~D~i~id~~~ 157 (237)
.... ..+ ...+|+|+...+.
T Consensus 79 ~~~~~~~~------~~~~diVi~~~d~ 99 (143)
T cd01483 79 SEDNLDDF------LDGVDLVIDAIDN 99 (143)
T ss_pred ChhhHHHH------hcCCCEEEECCCC
Confidence 3321 122 3789999765543
No 446
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=86.35 E-value=1.9 Score=36.44 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=66.2
Q ss_pred CEEEEEcccccHHHHHHHhhC----C---------------CCCEEEEEeCCc--hHHHHHHHHHHhc----------CC
Q 026547 72 KKTIEIGVFTGYSLLLTALTI----P---------------EDGQIMAIDVNR--ETYEIGLPVIKKA----------GV 120 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~----~---------------~~~~v~~vD~~~--~~~~~a~~~~~~~----------~~ 120 (237)
.+||-||-|.|.-...+|..+ . ....|+.||+.+ ..+......+... +.
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 599999999998777666555 0 124899999865 3333333333322 00
Q ss_pred ----C--CcEEEEeccchHHHHH-HhhcCCCCCceeEEEE--------eCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 121 ----D--HKINFIESEALSVLDQ-LLKDSENEGSFDYAFV--------DADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 121 ----~--~~v~~~~~d~~~~~~~-~~~~~~~~~~~D~i~i--------d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
. =+++|.+.|++..-.. +..- ......++|-+ .........|+..+-..+++|.++++.|
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~l-l~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSL-LGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHH-hccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 1 1478889988764332 1000 01124566621 1234456788999999999999988865
No 447
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.32 E-value=7 Score=34.15 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=45.8
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCC-------------------chHHHHHHHHHHhcCCCCcEEEEec
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVN-------------------RETYEIGLPVIKKAGVDHKINFIES 129 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~-------------------~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (237)
...+|+-+|||. |......+...+ -++++.+|.+ ....+.+.+.+++.+..-+++.+..
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 566899999973 443333333333 4689999987 3456666777766653333444443
Q ss_pred cchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547 130 EALS-VLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 130 d~~~-~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
.... .+..+ ...+|+|+...+
T Consensus 213 ~~~~~~~~~~------~~~~D~Vv~~~d 234 (376)
T PRK08762 213 RVTSDNVEAL------LQDVDVVVDGAD 234 (376)
T ss_pred cCChHHHHHH------HhCCCEEEECCC
Confidence 3322 12222 257998875443
No 448
>PRK07680 late competence protein ComER; Validated
Probab=86.29 E-value=3.8 Score=33.98 Aligned_cols=87 Identities=14% Similarity=0.045 Sum_probs=49.3
Q ss_pred EEEEEcccccHHHHHHHhhCCCC-----CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 73 KTIEIGVFTGYSLLLTALTIPED-----GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
+|.=||+ |..+..++..+... ..|+.++.+++..+...+. .+ .+.+ ..+..+.+ ..
T Consensus 2 ~I~iIG~--G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~---~~---g~~~-~~~~~~~~----------~~ 62 (273)
T PRK07680 2 NIGFIGT--GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER---YP---GIHV-AKTIEEVI----------SQ 62 (273)
T ss_pred EEEEECc--cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH---cC---CeEE-ECCHHHHH----------Hh
Confidence 4666787 45444444433212 3688999887665443332 11 1332 22333322 45
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAV 178 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 178 (237)
.|+||+-.......+.++.+.+.++++.+++
T Consensus 63 aDiVilav~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 63 SDLIFICVKPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred CCEEEEecCHHHHHHHHHHHHhhcCCCCEEE
Confidence 6899887766666777777777787766443
No 449
>PRK07326 short chain dehydrogenase; Provisional
Probab=86.27 E-value=6.4 Score=31.29 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=48.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcCC
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDSE 143 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~~ 143 (237)
.+.||-+|. +|..+..+++.+. .+.+|++++.++.......+.+... .+++++.+|..+. +....+.
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~-- 79 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAA-- 79 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHH--
Confidence 578898884 6666666665542 3568999998887666555544432 3578888876542 1121111
Q ss_pred CCCceeEEEEeC
Q 026547 144 NEGSFDYAFVDA 155 (237)
Q Consensus 144 ~~~~~D~i~id~ 155 (237)
.+.+|.|+...
T Consensus 80 -~~~~d~vi~~a 90 (237)
T PRK07326 80 -FGGLDVLIANA 90 (237)
T ss_pred -cCCCCEEEECC
Confidence 24789888654
No 450
>PRK06914 short chain dehydrogenase; Provisional
Probab=86.16 E-value=7.7 Score=31.83 Aligned_cols=81 Identities=22% Similarity=0.190 Sum_probs=50.4
Q ss_pred CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH-----HHhhcCCC
Q 026547 71 AKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD-----QLLKDSEN 144 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~~~ 144 (237)
.+.+|-+|+ +|..+..+++.+ ..+.+|++++.+++..+...+.....+...+++++.+|..+.-. ...+.
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--- 78 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE--- 78 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh---
Confidence 457888885 444555555443 23678999998887776665555555544568888888765321 11111
Q ss_pred CCceeEEEEeC
Q 026547 145 EGSFDYAFVDA 155 (237)
Q Consensus 145 ~~~~D~i~id~ 155 (237)
.+++|.|+..+
T Consensus 79 ~~~id~vv~~a 89 (280)
T PRK06914 79 IGRIDLLVNNA 89 (280)
T ss_pred cCCeeEEEECC
Confidence 35789887654
No 451
>PRK05599 hypothetical protein; Provisional
Probab=86.13 E-value=8.1 Score=31.23 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=50.7
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhcCCCCC
Q 026547 73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKDSENEG 146 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~~~~~ 146 (237)
.+|-.|++.| .+..+++.+.++.+|+.++.+++.++...+.++..+. +++.++.+|..+ .+....+. .+
T Consensus 2 ~vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~---~g 76 (246)
T PRK05599 2 SILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQEL---AG 76 (246)
T ss_pred eEEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHh---cC
Confidence 5777887655 4566666555578999999888877777666665542 346777777654 22222221 36
Q ss_pred ceeEEEEeCC
Q 026547 147 SFDYAFVDAD 156 (237)
Q Consensus 147 ~~D~i~id~~ 156 (237)
++|+++....
T Consensus 77 ~id~lv~nag 86 (246)
T PRK05599 77 EISLAVVAFG 86 (246)
T ss_pred CCCEEEEecC
Confidence 7899886543
No 452
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=85.99 E-value=14 Score=31.75 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=54.6
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 69 ~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
.++.+||-.|+| .|..++.+|+.. +.+++.++.+++....+.+ ..|... .+...+. +.+... ...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~~--~i~~~~~-~~~~~~------~~~ 244 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGADD--YLVSSDA-AEMQEA------ADS 244 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCcE--EecCCCh-HHHHHh------cCC
Confidence 356788887753 244556677765 4578888877765443332 345421 1111111 222222 235
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (237)
+|++|-... ....++.+.+.|+++|.++.-..
T Consensus 245 ~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 245 LDYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred CcEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence 898864322 12456777889999998887544
No 453
>PRK10083 putative oxidoreductase; Provisional
Probab=85.99 E-value=8.9 Score=32.42 Aligned_cols=101 Identities=14% Similarity=0.040 Sum_probs=53.9
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhh-CCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547 66 LKLVNAKKTIEIGVFT-GYSLLLTALT-IPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~~~~la~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
....++.+||-.|+|. |..++.+++. ++ ...+++++.+++..+.+++ .|.+.-+.....+. ...+...
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~---~~~~~~~-- 225 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPL---GEALEEK-- 225 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccH---HHHHhcC--
Confidence 3455677898888532 2233445554 23 3368889988877766554 35421122211122 2222111
Q ss_pred CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
...+|+++ |.... ...+...++.|+++|.++.-
T Consensus 226 -g~~~d~vi-d~~g~--~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 226 -GIKPTLII-DAACH--PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred -CCCCCEEE-ECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 12345654 43221 34567778999999998864
No 454
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.98 E-value=3.6 Score=38.38 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=56.7
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCce
Q 026547 72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGSF 148 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~ 148 (237)
.+|+-+|+ |..+..+++.+. .+..++.+|.+++.++.+++ .| ..++.||+.+ .+... +-++.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~a-----gi~~A 465 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAA-----GAEKA 465 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhc-----CCccC
Confidence 46777776 666666665543 24689999999998887765 23 5678899866 33332 24678
Q ss_pred eEEEEeCCCcCc-HHHHHHHHccCCCCeEEEE
Q 026547 149 DYAFVDADKVNY-WNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 149 D~i~id~~~~~~-~~~~~~~~~~L~~gG~lv~ 179 (237)
|.+++..+.... ...... .+.+.|...+++
T Consensus 466 ~~vv~~~~d~~~n~~i~~~-~r~~~p~~~Iia 496 (601)
T PRK03659 466 EAIVITCNEPEDTMKIVEL-CQQHFPHLHILA 496 (601)
T ss_pred CEEEEEeCCHHHHHHHHHH-HHHHCCCCeEEE
Confidence 887765443222 222233 355667666665
No 455
>PRK05867 short chain dehydrogenase; Provisional
Probab=85.98 E-value=6.9 Score=31.63 Aligned_cols=80 Identities=23% Similarity=0.216 Sum_probs=50.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~ 142 (237)
+++.+|-.|++.| .+..+++.+. .+.+|+.++.+++.++...+.++..+ .++.++.+|..+. +....+.
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~- 83 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE- 83 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH-
Confidence 5678999997554 4444444432 36799999998877776666665544 3577777776542 1222111
Q ss_pred CCCCceeEEEEeC
Q 026547 143 ENEGSFDYAFVDA 155 (237)
Q Consensus 143 ~~~~~~D~i~id~ 155 (237)
.+++|.++...
T Consensus 84 --~g~id~lv~~a 94 (253)
T PRK05867 84 --LGGIDIAVCNA 94 (253)
T ss_pred --hCCCCEEEECC
Confidence 36789988654
No 456
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.80 E-value=4 Score=32.18 Aligned_cols=95 Identities=12% Similarity=0.118 Sum_probs=55.5
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547 62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD 141 (237)
Q Consensus 62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 141 (237)
+........+++||-+|+.- .+.+.|..+.+..+|+.+|++|.+-.. +.+.|.|..+ ..
T Consensus 36 i~~~~~~~E~~~vli~G~Yl--tG~~~a~~Ls~~~~vtv~Di~p~~r~~---------lp~~v~Fr~~--~~-------- 94 (254)
T COG4017 36 IRDFLEGEEFKEVLIFGVYL--TGNYTAQMLSKADKVTVVDIHPFMRGF---------LPNNVKFRNL--LK-------- 94 (254)
T ss_pred hhhhhcccCcceEEEEEeee--hhHHHHHHhcccceEEEecCCHHHHhc---------CCCCccHhhh--cC--------
Confidence 33333455788999999863 334555555567899999999865321 1234555443 11
Q ss_pred CCCCCceeEEEEeCC-CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 142 SENEGSFDYAFVDAD-KVNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 142 ~~~~~~~D~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
+..+.+|+|+--.. ..-.++++ +.+.| +++++.|..
T Consensus 95 -~~~G~~DlivDlTGlGG~~Pe~L----~~fnp-~vfiVEdP~ 131 (254)
T COG4017 95 -FIRGEVDLIVDLTGLGGIEPEFL----AKFNP-KVFIVEDPK 131 (254)
T ss_pred -CCCCceeEEEeccccCCCCHHHH----hccCC-ceEEEECCC
Confidence 22588999963322 12234444 34456 667777654
No 457
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.78 E-value=8.3 Score=31.13 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=51.9
Q ss_pred EEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCchHHHHHHH-HHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCce
Q 026547 73 KTIEIGVFTGYSLLLTALTIPED-GQIMAIDVNRETYEIGLP-VIKKAGVDHKINFIESEALS--VLDQLLKDSENEGSF 148 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~ 148 (237)
+++-+|| |..+..+|+.+... -.|+.+|.+++.++.... .+ ..+.+++|+.+ .+... +...+
T Consensus 2 ~iiIiG~--G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~a-----gi~~a 67 (225)
T COG0569 2 KIIIIGA--GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEA-----GIDDA 67 (225)
T ss_pred EEEEECC--cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhc-----CCCcC
Confidence 5777888 56666666665444 589999999988765322 11 26788888765 44443 35789
Q ss_pred eEEEEeCCCcCcHHHHHHH
Q 026547 149 DYAFVDADKVNYWNYHERL 167 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~ 167 (237)
|.+++..........+-.+
T Consensus 68 D~vva~t~~d~~N~i~~~l 86 (225)
T COG0569 68 DAVVAATGNDEVNSVLALL 86 (225)
T ss_pred CEEEEeeCCCHHHHHHHHH
Confidence 9998776554433333333
No 458
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=85.69 E-value=12 Score=28.68 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 56 PDAGQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 56 ~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
..+.+.|...+.. .+..+|+=|||=+-+..+.- ......+++.+|.+..... .+-. ...+.-.+...
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~--------~~~~-~F~fyD~~~p~ 77 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQ--------FGGD-EFVFYDYNEPE 77 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHh--------cCCc-ceEECCCCChh
Confidence 4444555444333 34579999999555543322 1223678999999975542 2211 12333333333
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCCcCcHHH----HHHHHccCCCCeEEEEe
Q 026547 134 VLDQLLKDSENEGSFDYAFVDADKVNYWNY----HERLMKLLKVGGIAVYD 180 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~----~~~~~~~L~~gG~lv~~ 180 (237)
.++... .++||+|++|.+- ...+. .+.+..++++++-|++.
T Consensus 78 ~~~~~l-----~~~~d~vv~DPPF-l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 78 ELPEEL-----KGKFDVVVIDPPF-LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred hhhhhc-----CCCceEEEECCCC-CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 333221 4799999999764 22333 34454566777777764
No 459
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=85.64 E-value=12 Score=30.61 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=45.0
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES 129 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 129 (237)
...+|+-+|||. |......+...+ -++++.+|.+. ..++.+++.+++.+..-+++.+..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 567999999963 443333222223 46888888533 234555666666654444555554
Q ss_pred cchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547 130 EALS-VLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 130 d~~~-~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
.... ....+ ...||+|+...+
T Consensus 110 ~i~~~~~~~~------~~~~DiVi~~~D 131 (245)
T PRK05690 110 RLDDDELAAL------IAGHDLVLDCTD 131 (245)
T ss_pred cCCHHHHHHH------HhcCCEEEecCC
Confidence 4322 22222 367999876544
No 460
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=85.54 E-value=4.6 Score=34.46 Aligned_cols=79 Identities=22% Similarity=0.223 Sum_probs=47.0
Q ss_pred CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCc-hHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCC
Q 026547 71 AKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNR-ETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEG 146 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~ 146 (237)
+.+||-.| |.|+.+.+-+.++ ..+-.|+++|.-- ..+...++...-.+-...|.|..+|..| .++.+.+ ..
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~----~~ 76 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFS----EV 76 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHh----hc
Confidence 56888888 7788655433333 2367899999533 2222222222222323579999999877 4455533 36
Q ss_pred ceeEEEEe
Q 026547 147 SFDYAFVD 154 (237)
Q Consensus 147 ~~D~i~id 154 (237)
+||.|+..
T Consensus 77 ~fd~V~Hf 84 (343)
T KOG1371|consen 77 KFDAVMHF 84 (343)
T ss_pred CCceEEee
Confidence 79988754
No 461
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=85.30 E-value=4 Score=28.06 Aligned_cols=76 Identities=22% Similarity=0.185 Sum_probs=39.8
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcCCCCcccCCCCC-----CCccccchHHHHHHHHHHhhcCCCc
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQ-----VPDHLRGGRQATLDLNRSLADDPRI 219 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (237)
...||++++|+...-.++.+..+...++-||++++--..+......+... .+.+..-.....+.|.+.+.+++++
T Consensus 9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~~~~~~F~~rf~~~L~~~~~i 88 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYTDVTPRFIRRFIRSLQSDPGI 88 (92)
T ss_dssp T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS-B--HHHHHHHHHHHCCSTTS
T ss_pred CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCCcccHHHHHHHHHHHHHCcCC
Confidence 36799999999877788999999999999999987433321111111000 1111122344567788888877765
Q ss_pred e
Q 026547 220 Q 220 (237)
Q Consensus 220 ~ 220 (237)
-
T Consensus 89 ~ 89 (92)
T PF08351_consen 89 I 89 (92)
T ss_dssp -
T ss_pred c
Confidence 3
No 462
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=85.30 E-value=9.1 Score=32.48 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=55.8
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF 148 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 148 (237)
++.+||-.|+|. |..+..+++..+ ..+|++++.+++..+.++ +.|.+.-+.....+..+.+..+. ....+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~----~lg~~~~~~~~~~~~~~~~~~~~----~~~~~ 233 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELAR----KMGATRAVNVAKEDLRDVMAELG----MTEGF 233 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HhCCcEEecCccccHHHHHHHhc----CCCCC
Confidence 566777777654 556667777654 236888877776655443 33532111111122223333221 13568
Q ss_pred eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547 149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN 181 (237)
Q Consensus 149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (237)
|+||-... ....+..+.+.|+++|.++.-.
T Consensus 234 d~v~d~~g---~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 234 DVGLEMSG---APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence 98864222 1345677778999999887753
No 463
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=85.28 E-value=2.8 Score=33.98 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=39.3
Q ss_pred cccHHHH--HHHhhC-CCCCEEEEEeCCch--HHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe
Q 026547 80 FTGYSLL--LTALTI-PEDGQIMAIDVNRE--TYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVD 154 (237)
Q Consensus 80 G~G~~~~--~la~~~-~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id 154 (237)
|.|-.|. .++..+ ..+.+|..||-+|. ..++.+...+...+++++.+...+-...+....+. .....||+|++|
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~VlvD 90 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLVD 90 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEEe
Confidence 4455444 333333 23779999998774 44443333233344556666665433333332111 012459999998
Q ss_pred C
Q 026547 155 A 155 (237)
Q Consensus 155 ~ 155 (237)
.
T Consensus 91 l 91 (231)
T PF07015_consen 91 L 91 (231)
T ss_pred C
Confidence 4
No 464
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=85.27 E-value=9.3 Score=30.90 Aligned_cols=81 Identities=15% Similarity=0.007 Sum_probs=48.1
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcCC
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDSE 143 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~~ 143 (237)
+++||-.|. +|..+..+++.+. .+.+|+.++.++...+...+.+....-..++.++.+|..+. +....+.
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~-- 78 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEI-- 78 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHH--
Confidence 357888885 5666666665553 35799999988776655444443321113578888886542 2222111
Q ss_pred CCCceeEEEEeC
Q 026547 144 NEGSFDYAFVDA 155 (237)
Q Consensus 144 ~~~~~D~i~id~ 155 (237)
.++.|.|+..+
T Consensus 79 -~~~id~vv~~a 89 (259)
T PRK12384 79 -FGRVDLLVYNA 89 (259)
T ss_pred -cCCCCEEEECC
Confidence 25789887654
No 465
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=85.20 E-value=9.9 Score=33.01 Aligned_cols=79 Identities=19% Similarity=0.029 Sum_probs=46.7
Q ss_pred CCCEEEEEcccc-cHHHH-HHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEe
Q 026547 70 NAKKTIEIGVFT-GYSLL-LTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIE 128 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~-~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~ 128 (237)
...+||-+|||. |...+ .|++ .+ -++++.+|.+. ...+.+++.+++.+..-+++.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~-~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAG-AG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHH-cC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 457899999974 33333 3333 23 46888888654 34566777777776544555554
Q ss_pred ccchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547 129 SEALS-VLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 129 ~d~~~-~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
..... ....+ ...||+|+...+
T Consensus 105 ~~i~~~~~~~~------~~~~DvVvd~~d 127 (355)
T PRK05597 105 RRLTWSNALDE------LRDADVILDGSD 127 (355)
T ss_pred eecCHHHHHHH------HhCCCEEEECCC
Confidence 44322 11222 267999875543
No 466
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=85.18 E-value=10 Score=31.75 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=57.9
Q ss_pred hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
...++.+||-.|. +.|..+..+++.. +.+|++++.++...+.+++. .|....+.....+..+.+..+ .
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~----~- 211 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEA----A- 211 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHh----c-
Confidence 3445678888884 4566667777764 56899998888766655442 343211222111222222222 1
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
...+|+++ +... ...++..++.|+++|.++.
T Consensus 212 ~~~~d~vi-~~~g---~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 212 PDGIDVYF-DNVG---GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred cCCceEEE-Ecch---HHHHHHHHHhcCCCceEEE
Confidence 25689886 4322 2356777889999998774
No 467
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.07 E-value=13 Score=29.59 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=50.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH------HHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL------DQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~~ 142 (237)
.++.+|-.|+ +|..+..+++.+ ..+.+|+.++.+++..+.....+...+ .++.++.+|..+.. ....+.
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~- 81 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNE- 81 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHH-
Confidence 3567888885 677777766654 236799999998876655555554433 36888888864421 111111
Q ss_pred CCCCceeEEEEeC
Q 026547 143 ENEGSFDYAFVDA 155 (237)
Q Consensus 143 ~~~~~~D~i~id~ 155 (237)
.+..|.|+...
T Consensus 82 --~~~id~vi~~a 92 (239)
T PRK07666 82 --LGSIDILINNA 92 (239)
T ss_pred --cCCccEEEEcC
Confidence 25789988654
No 468
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.06 E-value=3.4 Score=38.75 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=55.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCc
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGS 147 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~ 147 (237)
..+|+-+|+ |..+..+++.+.. +..++.+|.+++.++.+++ .| ..++.||+.+. +... +-++
T Consensus 400 ~~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~a-----gi~~ 464 (621)
T PRK03562 400 QPRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESA-----GAAK 464 (621)
T ss_pred cCcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHHHHHhc-----CCCc
Confidence 357888888 5555555554432 4589999999999887765 23 56788988663 3322 2467
Q ss_pred eeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEE
Q 026547 148 FDYAFVDADKVN-YWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 148 ~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~ 179 (237)
.|.+++..+... .......+ +.+.|+-.+++
T Consensus 465 A~~vvv~~~d~~~n~~i~~~a-r~~~p~~~iia 496 (621)
T PRK03562 465 AEVLINAIDDPQTSLQLVELV-KEHFPHLQIIA 496 (621)
T ss_pred CCEEEEEeCCHHHHHHHHHHH-HHhCCCCeEEE
Confidence 888876543322 22222323 44455544443
No 469
>PRK05967 cystathionine beta-lyase; Provisional
Probab=84.98 E-value=27 Score=30.86 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchH-HHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRET-YEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
.|....+-..++....+...+-+.+|.+.....+...+.++.+|+..+..-.. ....+..++..|. +++++..+..+
T Consensus 63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e 140 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA 140 (395)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence 45555555556565656667778887766655554445557788887654322 2334455666665 46665433333
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCCc--CcHHHHHHHHccCCCCe-EEEEeCcC
Q 026547 134 VLDQLLKDSENEGSFDYAFVDADKV--NYWNYHERLMKLLKVGG-IAVYDNTL 183 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG-~lv~~~~~ 183 (237)
.+.... .+...+|++..... .....++.+.++.+..| .+++|++.
T Consensus 141 ~l~~al-----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 141 GIAKLM-----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 344331 24567898875432 24456677777666644 56667664
No 470
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=84.95 E-value=14 Score=30.51 Aligned_cols=101 Identities=16% Similarity=0.261 Sum_probs=58.6
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547 66 LKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE 143 (237)
Q Consensus 66 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (237)
....++..||-.|+ +.|..+..+++.. +.+|+.++.+++..+.+++ .|...-+.....+..+.+....
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~---- 204 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALT---- 204 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHc----
Confidence 34456789999997 3555666677654 5679999988877665543 3432112222222222233221
Q ss_pred CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
....+|+++-.... ...+.+.+.++++|.++.-
T Consensus 205 ~~~~~d~v~~~~g~----~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 205 GGRGVDVVYDPVGG----DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CCCCcEEEEECccH----HHHHHHHHhhccCCEEEEE
Confidence 12468988743221 3456677888999988754
No 471
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=84.92 E-value=15 Score=32.10 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=22.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCc
Q 026547 72 KKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNR 105 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~ 105 (237)
.+|.-|| |.|..+..++..+.. +..|+++|.++
T Consensus 99 ~~I~IiG-G~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVG-GKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ceEEEEc-CCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 5788888 346666666665532 45799998764
No 472
>PRK08114 cystathionine beta-lyase; Provisional
Probab=84.86 E-value=27 Score=30.83 Aligned_cols=128 Identities=9% Similarity=0.080 Sum_probs=74.8
Q ss_pred ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDV-NRETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
-.|....+-..++....+...+-..+|++.....+...+.++.+|++.+. -.......+..+++.|. ++.++...-.
T Consensus 60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~ 137 (395)
T PRK08114 60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIG 137 (395)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCH
Confidence 45666666677777888888999999877766545444555677777653 23444556666677775 3555543222
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCCcCc--HHHHHHHHccCC---CCeEEEEeCcCCCCcc
Q 026547 133 SVLDQLLKDSENEGSFDYAFVDADKVNY--WNYHERLMKLLK---VGGIAVYDNTLWGGTV 188 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~--~~~~~~~~~~L~---~gG~lv~~~~~~~g~~ 188 (237)
+.+.... .+.-.+|++....... ...++.+.++.+ +|-.+++||+...+..
T Consensus 138 ~~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~ 193 (395)
T PRK08114 138 ADIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL 193 (395)
T ss_pred HHHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc
Confidence 3333321 2356788887543221 122344444333 3567888888755543
No 473
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=84.82 E-value=1.9 Score=36.68 Aligned_cols=93 Identities=18% Similarity=0.299 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhcCC-C-EE---EEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547 58 AGQLMAMLLKLVNA-K-KT---IEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131 (237)
Q Consensus 58 ~~~~l~~l~~~~~~-~-~v---LeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (237)
...++..|....+. + ++ +|||+ |.+.++.+..... +-...++|++......|+++..+.+++..+.+++.+.
T Consensus 85 YihwI~DLLss~q~~k~~i~~GiDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~ 162 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQSDKSTIRRGIDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEP 162 (419)
T ss_pred hHHHHHHHhhcccCCCcceeeeeeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecc
Confidence 34445555543332 2 23 56665 6777776654332 3468999999999999999999999998888888766
Q ss_pred hHHH-HH-HhhcCCCCCceeEEEEe
Q 026547 132 LSVL-DQ-LLKDSENEGSFDYAFVD 154 (237)
Q Consensus 132 ~~~~-~~-~~~~~~~~~~~D~i~id 154 (237)
.+.+ .. +.. .....||+..++
T Consensus 163 ~ktll~d~~~~--~~e~~ydFcMcN 185 (419)
T KOG2912|consen 163 QKTLLMDALKE--ESEIIYDFCMCN 185 (419)
T ss_pred hhhcchhhhcc--CccceeeEEecC
Confidence 4422 22 211 112447777654
No 474
>PRK07774 short chain dehydrogenase; Provisional
Probab=84.75 E-value=9.8 Score=30.51 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=49.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH------HHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL------DQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~~ 142 (237)
..+++|-+| |+|+.+..+++.+. .+.+|+.++.++.......+.+...+ .++.++..|..+.- ....++
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~- 80 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSA- 80 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH-
Confidence 456888888 55666666666552 35799999988766655555444332 34667777765432 112111
Q ss_pred CCCCceeEEEEeCC
Q 026547 143 ENEGSFDYAFVDAD 156 (237)
Q Consensus 143 ~~~~~~D~i~id~~ 156 (237)
.+++|.||..+.
T Consensus 81 --~~~id~vi~~ag 92 (250)
T PRK07774 81 --FGGIDYLVNNAA 92 (250)
T ss_pred --hCCCCEEEECCC
Confidence 257899987543
No 475
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.75 E-value=21 Score=29.50 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=44.4
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD 141 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~ 141 (237)
.++.+|-.|.+. +..+..+++.+. .+.+|+.++.+....+.+.+..++.+. . .++.+|..+. .....+.
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~--~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS--D-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC--c-eEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999752 334444444432 367898888875433333333333332 2 4566676542 2222222
Q ss_pred CCCCCceeEEEEeCC
Q 026547 142 SENEGSFDYAFVDAD 156 (237)
Q Consensus 142 ~~~~~~~D~i~id~~ 156 (237)
.+++|+++.++.
T Consensus 81 ---~g~iDilVnnAG 92 (274)
T PRK08415 81 ---LGKIDFIVHSVA 92 (274)
T ss_pred ---cCCCCEEEECCc
Confidence 367998886653
No 476
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=84.72 E-value=2.9 Score=32.00 Aligned_cols=97 Identities=14% Similarity=0.268 Sum_probs=52.1
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE-EEeccchHHHHHHhhcCCCCCcee
Q 026547 71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN-FIESEALSVLDQLLKDSENEGSFD 149 (237)
Q Consensus 71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~~~D 149 (237)
+++.+-+|+..=..-....+ .. ..+|..||.++--++. + + .+++. +... ++...+.. ..++||
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~-~G-A~~iltveyn~L~i~~--~-~-----~dr~ssi~p~---df~~~~~~---y~~~fD 65 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ-HG-AAKILTVEYNKLEIQE--E-F-----RDRLSSILPV---DFAKNWQK---YAGSFD 65 (177)
T ss_pred CceEEEEecCCchhhHHHHH-cC-CceEEEEeecccccCc--c-c-----ccccccccHH---HHHHHHHH---hhccch
Confidence 56788888875554332222 22 4689999987522210 0 0 11221 2222 33332221 147899
Q ss_pred EEEEeCC-----------C---cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547 150 YAFVDAD-----------K---VNYWNYHERLMKLLKVGGIAVYDNTL 183 (237)
Q Consensus 150 ~i~id~~-----------~---~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (237)
++.+-+. . ......+.++...||+||.+++.-..
T Consensus 66 ~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 66 FAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred hhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 8754321 1 11345566677899999999986544
No 477
>PRK06172 short chain dehydrogenase; Provisional
Probab=84.67 E-value=12 Score=30.15 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=50.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~ 142 (237)
.++++|-+|++ |..+..+++.+. .+.+|+.++.+++..+...+.++..+ .++.++.+|..+. +....+.
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~- 81 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA- 81 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH-
Confidence 46789999964 445555554442 35699999998877766666665544 3588888887542 1112111
Q ss_pred CCCCceeEEEEeC
Q 026547 143 ENEGSFDYAFVDA 155 (237)
Q Consensus 143 ~~~~~~D~i~id~ 155 (237)
.+++|.|+...
T Consensus 82 --~g~id~li~~a 92 (253)
T PRK06172 82 --YGRLDYAFNNA 92 (253)
T ss_pred --hCCCCEEEECC
Confidence 25789988654
No 478
>PRK07062 short chain dehydrogenase; Provisional
Probab=84.59 E-value=11 Score=30.69 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=50.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH------HHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL------DQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~~ 142 (237)
.++.+|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+.......++.++..|..+.- ....+.
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~- 84 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR- 84 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh-
Confidence 4678999996554 444555444 2367899999998777766665554322235777777765431 222111
Q ss_pred CCCCceeEEEEeCC
Q 026547 143 ENEGSFDYAFVDAD 156 (237)
Q Consensus 143 ~~~~~~D~i~id~~ 156 (237)
.+.+|.++..+.
T Consensus 85 --~g~id~li~~Ag 96 (265)
T PRK07062 85 --FGGVDMLVNNAG 96 (265)
T ss_pred --cCCCCEEEECCC
Confidence 367899876643
No 479
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.57 E-value=14 Score=30.65 Aligned_cols=93 Identities=19% Similarity=0.136 Sum_probs=53.4
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHH-------HhcCC-C--------CcEEEEeccchHH
Q 026547 72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVI-------KKAGV-D--------HKINFIESEALSV 134 (237)
Q Consensus 72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~-------~~~~~-~--------~~v~~~~~d~~~~ 134 (237)
.+|--||+| ..+..++..+. .+.+|+.+|.+++.++.+++.+ .+.|. . .++++ ..|.
T Consensus 4 ~kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~--- 77 (282)
T PRK05808 4 QKIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL--- 77 (282)
T ss_pred cEEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH---
Confidence 357778875 43333333221 1458999999999887665332 22231 1 02221 1221
Q ss_pred HHHHhhcCCCCCceeEEEEeCCCcCc--HHHHHHHHccCCCCeEEE
Q 026547 135 LDQLLKDSENEGSFDYAFVDADKVNY--WNYHERLMKLLKVGGIAV 178 (237)
Q Consensus 135 ~~~~~~~~~~~~~~D~i~id~~~~~~--~~~~~~~~~~L~~gG~lv 178 (237)
..+ ...|+|+........ .++++.+.+.++++.+++
T Consensus 78 -~~~-------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 78 -DDL-------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred -HHh-------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 112 567999877643332 478888888889887764
No 480
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.49 E-value=13 Score=31.29 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=24.6
Q ss_pred CEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHH
Q 026547 72 KKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYE 109 (237)
Q Consensus 72 ~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~ 109 (237)
.+|.-||+|. |....+.+...+-. +|+.+|++++..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~ 40 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQ 40 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhH
Confidence 4788999977 66544433322212 8999999887653
No 481
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=84.41 E-value=15 Score=30.77 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc-chHHHHHHhhcCC
Q 026547 67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE-ALSVLDQLLKDSE 143 (237)
Q Consensus 67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~ 143 (237)
...++.+||-.|. +.|..+..+|+.. +.+++.+..+++..+.+++ .|...-+.....+ ..+.+..+.
T Consensus 137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~---- 206 (334)
T PTZ00354 137 DVKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT---- 206 (334)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----
Confidence 3445678888874 4666777788765 4566778878776666543 3542111111111 222222221
Q ss_pred CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
....+|+++- ... ...++.+.+.|+++|.++.-
T Consensus 207 ~~~~~d~~i~-~~~---~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 207 GEKGVNLVLD-CVG---GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred CCCCceEEEE-CCc---hHHHHHHHHHhccCCeEEEE
Confidence 1256999873 322 35667788899999988763
No 482
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.20 E-value=6.1 Score=32.89 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=51.7
Q ss_pred EEEEEcccccHHHHHHHhhCC-----CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547 73 KTIEIGVFTGYSLLLTALTIP-----EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS 147 (237)
Q Consensus 73 ~vLeiG~G~G~~~~~la~~~~-----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 147 (237)
+|.=|||| ..+..++..+- ...+|++.|.+++.++.+.+ +.| ++. ..+..+.. ..
T Consensus 4 ~IgfIG~G--~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---~~g----~~~-~~~~~e~~----------~~ 63 (272)
T PRK12491 4 QIGFIGCG--NMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---KYG----ITI-TTNNNEVA----------NS 63 (272)
T ss_pred eEEEECcc--HHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---hcC----cEE-eCCcHHHH----------hh
Confidence 57778874 45555554332 12369999998876554333 234 222 22332332 34
Q ss_pred eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
-|+||+........+.++.+...++++ .++++
T Consensus 64 aDiIiLavkP~~~~~vl~~l~~~~~~~-~lvIS 95 (272)
T PRK12491 64 ADILILSIKPDLYSSVINQIKDQIKND-VIVVT 95 (272)
T ss_pred CCEEEEEeChHHHHHHHHHHHHhhcCC-cEEEE
Confidence 589998877777778788877777665 44444
No 483
>PRK09242 tropinone reductase; Provisional
Probab=84.13 E-value=12 Score=30.34 Aligned_cols=83 Identities=8% Similarity=0.085 Sum_probs=50.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~ 142 (237)
.++++|-.|+..| .+..+++.+. .+.+|+.++.+++..+...+.+.......++.++.+|..+. +....+.
T Consensus 8 ~~k~~lItGa~~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~- 85 (257)
T PRK09242 8 DGQTALITGASKG-IGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH- 85 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH-
Confidence 4678898987543 4444444332 36789999988877766666555442124577888886542 1222211
Q ss_pred CCCCceeEEEEeCC
Q 026547 143 ENEGSFDYAFVDAD 156 (237)
Q Consensus 143 ~~~~~~D~i~id~~ 156 (237)
.+++|.++....
T Consensus 86 --~g~id~li~~ag 97 (257)
T PRK09242 86 --WDGLHILVNNAG 97 (257)
T ss_pred --cCCCCEEEECCC
Confidence 367899876543
No 484
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.08 E-value=15 Score=30.01 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=45.7
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES 129 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 129 (237)
+..+|+-+|||. |......+...+ -++++.+|.+. ...+.+++.+++.+..-+++.+..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 457899999974 444333333333 46888888543 223555666666664444555544
Q ss_pred cchH-HHHHHhhcCCCCCceeEEEEeCCC
Q 026547 130 EALS-VLDQLLKDSENEGSFDYAFVDADK 157 (237)
Q Consensus 130 d~~~-~~~~~~~~~~~~~~~D~i~id~~~ 157 (237)
.... ....+ ...+|+|+.-.+.
T Consensus 102 ~i~~~~~~~~------~~~~DlVvd~~D~ 124 (240)
T TIGR02355 102 KLDDAELAAL------IAEHDIVVDCTDN 124 (240)
T ss_pred cCCHHHHHHH------hhcCCEEEEcCCC
Confidence 3322 22333 3679999755443
No 485
>PRK08328 hypothetical protein; Provisional
Probab=84.01 E-value=14 Score=29.88 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=43.4
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc--------------------hHHHHHHHHHHhcCCCCcEEEEe
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNR--------------------ETYEIGLPVIKKAGVDHKINFIE 128 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~--------------------~~~~~a~~~~~~~~~~~~v~~~~ 128 (237)
...+|+-+|||. |...+..+...+ -++++.+|.+. ...+.+++.+++.+..-+++.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~ 104 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV 104 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 456899999984 443333333333 46899998542 12333445555555444455555
Q ss_pred ccchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547 129 SEALS-VLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 129 ~d~~~-~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
+...+ .+..+ ...+|+|+...+
T Consensus 105 ~~~~~~~~~~~------l~~~D~Vid~~d 127 (231)
T PRK08328 105 GRLSEENIDEV------LKGVDVIVDCLD 127 (231)
T ss_pred ccCCHHHHHHH------HhcCCEEEECCC
Confidence 43322 12222 267899975443
No 486
>PRK05939 hypothetical protein; Provisional
Probab=83.96 E-value=29 Score=30.53 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547 55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRE-TYEIGLPVIKKAGVDHKINFIESEALS 133 (237)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (237)
.+....+-..++........+-..+|.+.....+...+.++.+|+..+..-. ..... ..++..|. .+.++..+-.+
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~G~--~v~~v~~~d~e 122 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGLGV--EVTMVDATDVQ 122 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhcCC--EEEEECCCCHH
Confidence 4666666677777777777887887765554444333455677877765321 11222 23455564 34544332223
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCCc--CcHHHHHHHHccCCCCe-EEEEeCcC
Q 026547 134 VLDQLLKDSENEGSFDYAFVDADKV--NYWNYHERLMKLLKVGG-IAVYDNTL 183 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG-~lv~~~~~ 183 (237)
.+.... .+.-.+|++..... .....++.+.++.+..| .+++|++.
T Consensus 123 ~l~~~l-----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 123 NVAAAI-----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHHhC-----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 333321 24567887764322 12344566666555544 55666654
No 487
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=83.90 E-value=11 Score=30.17 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=50.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH------HHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL------DQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~~ 142 (237)
.+++||-.|. +|..+..+++.+. .+.+|+.++.+++..+.....++..+ .+++++.+|..+.- ....+.
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~- 78 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVET- 78 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH-
Confidence 3467887775 5667777766553 35689999998877666555554433 35788888865422 122111
Q ss_pred CCCCceeEEEEeC
Q 026547 143 ENEGSFDYAFVDA 155 (237)
Q Consensus 143 ~~~~~~D~i~id~ 155 (237)
.+.+|.|+..+
T Consensus 79 --~~~~d~vi~~a 89 (258)
T PRK12429 79 --FGGVDILVNNA 89 (258)
T ss_pred --cCCCCEEEECC
Confidence 25789988654
No 488
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.83 E-value=18 Score=29.86 Aligned_cols=97 Identities=18% Similarity=0.191 Sum_probs=59.5
Q ss_pred hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
...++.+||-.|+ +.|..+..+|+.. +.+|+++..+++..+.++ ..|.. .+-....+..+.+..+
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~------ 205 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGAD-EVVIDDGAIAEQLRAA------ 205 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCc-EEEecCccHHHHHHHh------
Confidence 3456789998885 5666777788875 568999988887655543 34542 1211122222222222
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
...+|+++ +... ...++.+.+.|+++|.++.-
T Consensus 206 ~~~~d~vl-~~~~---~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 206 PGGFDKVL-ELVG---TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCCceEEE-ECCC---hHHHHHHHHHhccCCEEEEE
Confidence 25799987 3322 14567778999999998764
No 489
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=83.75 E-value=16 Score=31.09 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=55.3
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc---chHHHHHHhhcCCCC
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE---ALSVLDQLLKDSENE 145 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~~~~~ 145 (237)
++.+||-.|+|. |..+..+|+... ..+|++++.+++..+.+++ .|.. .++... ..+.+.... .
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-----~ 241 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAA-----G 241 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHh-----C
Confidence 567888887642 444556677653 2378899888777666533 3542 222221 122222221 1
Q ss_pred CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
+.+|+++-.... ...++..++.|+++|.++.-
T Consensus 242 ~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 242 GGVDAVIDFVNN---SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CCCcEEEECCCC---HHHHHHHHHHhhcCCeEEEE
Confidence 368998732221 34577788999999988863
No 490
>PLN02650 dihydroflavonol-4-reductase
Probab=83.70 E-value=5.8 Score=33.95 Aligned_cols=79 Identities=9% Similarity=0.066 Sum_probs=48.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEG 146 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~ 146 (237)
+.++||-.| |+|+.+.++++.+- .+.+|++++.++.............+...+++++.+|..+. +... ..
T Consensus 4 ~~k~iLVTG-atGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~------~~ 76 (351)
T PLN02650 4 QKETVCVTG-ASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA------IR 76 (351)
T ss_pred CCCEEEEeC-CcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH------Hh
Confidence 345788777 68888888877663 24689888877655443333222222223588889987653 3332 24
Q ss_pred ceeEEEEeC
Q 026547 147 SFDYAFVDA 155 (237)
Q Consensus 147 ~~D~i~id~ 155 (237)
.+|.|+..+
T Consensus 77 ~~d~ViH~A 85 (351)
T PLN02650 77 GCTGVFHVA 85 (351)
T ss_pred CCCEEEEeC
Confidence 578887543
No 491
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=83.68 E-value=20 Score=30.28 Aligned_cols=101 Identities=23% Similarity=0.250 Sum_probs=60.6
Q ss_pred hhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547 67 KLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144 (237)
Q Consensus 67 ~~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (237)
...++.+||-.|++ .|..+..++++. +.+|+.+..+++..+.++ ..|...-+.....+..+.+..+. .
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~----~ 231 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDDVEAVKELT----G 231 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccHHHHHHHHh----c
Confidence 45567789888875 566777788875 468999988877665443 33432111221112223333331 1
Q ss_pred CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180 (237)
Q Consensus 145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (237)
...+|+++-+... ......+.+.++++|.++.-
T Consensus 232 ~~~vd~vl~~~~~---~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 232 GGGAHAVVVTAVS---AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CCCCCEEEEcCCc---hHHHHHHHHHhhcCCEEEEe
Confidence 3569998753322 24566777889999998864
No 492
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.67 E-value=12 Score=29.45 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=46.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEe
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTI--PEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIE 128 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~--~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~ 128 (237)
...+|+-+|||. .+.++++.+ ..-++++.+|.+. ...+.+++++++.+..-+++.+.
T Consensus 20 ~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 20 RSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 467899999865 333333322 1146888988652 12455667777766554566655
Q ss_pred ccchHHHHHHhhcCCCCCceeEEEEeCC
Q 026547 129 SEALSVLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 129 ~d~~~~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
....+..+.+ ...||+|+....
T Consensus 98 ~~~~~~~~~~------~~~~dvVi~~~~ 119 (197)
T cd01492 98 DDISEKPEEF------FSQFDVVVATEL 119 (197)
T ss_pred cCccccHHHH------HhCCCEEEECCC
Confidence 5443333332 368999986543
No 493
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.64 E-value=11 Score=31.81 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=58.7
Q ss_pred HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH-HHhhc
Q 026547 65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD-QLLKD 141 (237)
Q Consensus 65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 141 (237)
.+...++.+||-+|+|. |..+..+++.. +.+ |+.++.+++..+.+++ .+.. .++..+..+... ...
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~-- 222 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKED-- 222 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHh--
Confidence 34455678999998652 55666677764 344 8889888877666543 3432 223222111111 111
Q ss_pred CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547 142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179 (237)
Q Consensus 142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (237)
....+|+++-... ....+..+.+.|+++|.++.
T Consensus 223 --~~~~vd~v~~~~~---~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 223 --NPYGFDVVIEATG---VPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred --cCCCCcEEEECCC---ChHHHHHHHHHHhcCCEEEE
Confidence 1367999974322 13567777889999998875
No 494
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.61 E-value=18 Score=29.39 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=44.5
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES 129 (237)
Q Consensus 70 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 129 (237)
+..+|+-+||| .|......+...+ -++++.+|.+. ...+.+++++.+.+..-+++.+..
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 45689999996 4444443333223 46899999653 223455666666654445555554
Q ss_pred cch-HHHHHHhhcCCCCCceeEEEEeC
Q 026547 130 EAL-SVLDQLLKDSENEGSFDYAFVDA 155 (237)
Q Consensus 130 d~~-~~~~~~~~~~~~~~~~D~i~id~ 155 (237)
... +....+. ...||+|+...
T Consensus 89 ~i~~~~~~~l~-----~~~~D~Vvdai 110 (231)
T cd00755 89 FLTPDNSEDLL-----GGDPDFVVDAI 110 (231)
T ss_pred ecCHhHHHHHh-----cCCCCEEEEcC
Confidence 432 1222221 24699987543
No 495
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.57 E-value=18 Score=27.83 Aligned_cols=74 Identities=20% Similarity=0.114 Sum_probs=41.6
Q ss_pred EEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCc------------------hHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547 73 KTIEIGVFT-GYS-LLLTALTIPEDGQIMAIDVNR------------------ETYEIGLPVIKKAGVDHKINFIESEAL 132 (237)
Q Consensus 73 ~vLeiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (237)
+|+-+|||. |.. +..+++. + -++++.+|.+. ...+.+++++++.+..-+++.+.....
T Consensus 1 ~VlViG~GglGs~ia~~La~~-G-vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-G-VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-C-CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence 478899974 443 3334442 2 45799999765 234555666666654444555544432
Q ss_pred H-HHHHHhhcCCCCCceeEEEEe
Q 026547 133 S-VLDQLLKDSENEGSFDYAFVD 154 (237)
Q Consensus 133 ~-~~~~~~~~~~~~~~~D~i~id 154 (237)
. .+..+ ...+|+|+..
T Consensus 79 ~~~~~~~------l~~~DlVi~~ 95 (174)
T cd01487 79 ENNLEGL------FGDCDIVVEA 95 (174)
T ss_pred hhhHHHH------hcCCCEEEEC
Confidence 2 22222 3679988754
No 496
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.56 E-value=22 Score=28.77 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=44.0
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547 70 NAKKTIEIGVFT-GYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD 141 (237)
Q Consensus 70 ~~~~vLeiG~G~-G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~ 141 (237)
.++.+|-.|.+. +..+..+++.+. .+.+|+.++.+....+.. ++.. ..++.++..|..+ .+....++
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~----~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSL----QKLV-DEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHH----Hhhc-cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 567899999763 345555554442 367898887764322222 2221 1346778887653 22222222
Q ss_pred CCCCCceeEEEEeC
Q 026547 142 SENEGSFDYAFVDA 155 (237)
Q Consensus 142 ~~~~~~~D~i~id~ 155 (237)
.+++|+++.++
T Consensus 81 ---~g~iD~lv~nA 91 (252)
T PRK06079 81 ---VGKIDGIVHAI 91 (252)
T ss_pred ---hCCCCEEEEcc
Confidence 36799988654
No 497
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.49 E-value=24 Score=29.88 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=37.4
Q ss_pred EEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHH-HHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547 73 KTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYE-IGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150 (237)
Q Consensus 73 ~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~ 150 (237)
+|.-||+|. |....+.+...+...+++.+|.+++..+ .+..........+...+..+|. +.+ ..-|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~----~~l-------~~aDi 70 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY----ADC-------KGADV 70 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH----HHh-------CCCCE
Confidence 577889865 3322222222111258999999987665 3333322222212233333432 222 66799
Q ss_pred EEEeCC
Q 026547 151 AFVDAD 156 (237)
Q Consensus 151 i~id~~ 156 (237)
|++...
T Consensus 71 Viita~ 76 (308)
T cd05292 71 VVITAG 76 (308)
T ss_pred EEEccC
Confidence 988654
No 498
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.43 E-value=21 Score=29.77 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=42.5
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCch-------------------HHHHHHHHHHhcCCCCcEEEEec
Q 026547 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRE-------------------TYEIGLPVIKKAGVDHKINFIES 129 (237)
Q Consensus 70 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~~ 129 (237)
...+|+-+||| .|..+...+...+ -++++.+|.+.- ..+.+++++.+.+..-+|+.+..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 56789999997 3444433322222 368999997531 12344566655554434554432
Q ss_pred cch-HHHHHHhhcCCCCCceeEEEEeCC
Q 026547 130 EAL-SVLDQLLKDSENEGSFDYAFVDAD 156 (237)
Q Consensus 130 d~~-~~~~~~~~~~~~~~~~D~i~id~~ 156 (237)
-.. +....+. ...||+|+...+
T Consensus 108 ~i~~e~~~~ll-----~~~~D~VIdaiD 130 (268)
T PRK15116 108 FITPDNVAEYM-----SAGFSYVIDAID 130 (268)
T ss_pred ccChhhHHHHh-----cCCCCEEEEcCC
Confidence 211 1222221 257999875433
No 499
>PRK07478 short chain dehydrogenase; Provisional
Probab=83.42 E-value=13 Score=30.03 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=50.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS 142 (237)
Q Consensus 70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~ 142 (237)
+++++|-.|++.| .+..+++.+. .+.+|+.++.+++.++...+.++..+ .++.++.+|..+. +....++
T Consensus 5 ~~k~~lItGas~g-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~- 80 (254)
T PRK07478 5 NGKVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVER- 80 (254)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh-
Confidence 4568888886544 4455544442 35789999998887776666666544 3577788776542 2222221
Q ss_pred CCCCceeEEEEeCC
Q 026547 143 ENEGSFDYAFVDAD 156 (237)
Q Consensus 143 ~~~~~~D~i~id~~ 156 (237)
.+++|.++..+.
T Consensus 81 --~~~id~li~~ag 92 (254)
T PRK07478 81 --FGGLDIAFNNAG 92 (254)
T ss_pred --cCCCCEEEECCC
Confidence 357899886653
No 500
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=83.40 E-value=1.8 Score=40.02 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=33.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc
Q 026547 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNR 105 (237)
Q Consensus 68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~ 105 (237)
+.++..|||+||..|.+..-.++.+|.++-|+|||+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 45677899999999999998899999889999999876
Done!