BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026548
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 151/216 (69%), Gaps = 8/216 (3%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D +FK+V+IGDS VGKS +LSRFTKNEF DSKSTIGVEF TRT+ I GK IKAQIWDTA
Sbjct: 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTA 70
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQERYRA+TSAYYRGA+GA++VYDI+K S+++ W+ ELR +AD ++ + LIGNKSDL
Sbjct: 71 GQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECG---- 201
+RAV E++ FA++ L F+E SALN +NVD AF L+ IY VSK +++ G
Sbjct: 131 AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSA 190
Query: 202 NGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC 237
NG +G G I + + E KK + +C
Sbjct: 191 NGNANGASAPNGPTISLTPTPN----ENKKANGNNC 222
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 227 bits (579), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/194 (58%), Positives = 145/194 (74%), Gaps = 10/194 (5%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++GK IKAQIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQERYR +TSAYYRGA+GA++VYDI K ++++V RW++ELR HADS+I I+L+GNKSDL
Sbjct: 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL------- 198
+RAV ++A FAE L F E SAL+ NV+ AF +L EIY VS+K++
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182
Query: 199 -ECGNGKVD--GPP 209
GN VD PP
Sbjct: 183 ESPGNNVVDISVPP 196
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 227 bits (579), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 108/168 (64%), Positives = 137/168 (81%)
Query: 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
D+ DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++GK IKAQIW
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
DTAGQERYRA+TSAYYRGA+GA++VYDI K ++++V RW++ELR HADS+I I+L+GNK
Sbjct: 84 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
SDL +RAV ++A FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/173 (62%), Positives = 139/173 (80%), Gaps = 1/173 (0%)
Query: 19 NMIP-DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKII 77
+++P DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++GK I
Sbjct: 10 SLVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 69
Query: 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRII 137
KAQIWDTAGQERYRA+TSAYYRGA+GA++VYDI K ++++V RW++ELR HADS+I I+
Sbjct: 70 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 129
Query: 138 LIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
L+GNKSDL +RAV ++A FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 130 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 224 bits (571), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/168 (63%), Positives = 136/168 (80%)
Query: 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
D+ DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++GK IKAQIW
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
DTAG ERYRA+TSAYYRGA+GA++VYDI K ++++V RW++ELR HADS+I I+L+GNK
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
SDL +RAV ++A FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 224 bits (570), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 107/169 (63%), Positives = 136/169 (80%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
D+ DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++GK IKAQI
Sbjct: 2 SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 61
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
WDTAG ERYRA+TSAYYRGA+GA++VYDI K ++++V RW++ELR HADS+I I+L+GN
Sbjct: 62 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 121
Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
KSDL +RAV ++A FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 223 bits (569), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 141/176 (80%), Gaps = 1/176 (0%)
Query: 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQI 81
D DY+FK+V+IGDS VGKS +LSRFT++EF +SKSTIGVEF T+++ + N KIIKAQI
Sbjct: 2 DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
WDTAGQERYRA+TSAYYRGA+GA++VYDITK+ SF+++ +W++ELR +ADS+I I+L+GN
Sbjct: 62 WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
KSDL +R ++ DA ++A+ + L F E SAL NV+ AF +LL EIY KK+
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQ 177
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/168 (63%), Positives = 135/168 (80%)
Query: 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
D+ DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++GK IKAQIW
Sbjct: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
Query: 83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
DTAG ERYRA+TSAYYRGA+GA++VYDI K ++++V RW++ELR HADS+I I L+GNK
Sbjct: 66 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNK 125
Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
SDL +RAV ++A FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 126 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 221 bits (563), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/165 (64%), Positives = 133/165 (80%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FKVV+IGDS VGKS +LSRFT+NEF +SKSTIGVEF TR++ ++GK IKAQIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
G ERYRA+TSAYYRGA+GA++VYDI K ++++V RW++ELR HADS+I I L+GNKSDL
Sbjct: 63 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
+RAV ++A FAE GL F E SAL+ NV+ AF +L EIY
Sbjct: 123 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 133/175 (76%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FK+V+IGDS VGKS +LSRFT +EF +SKSTIGVEF TRT+ + K IKAQIWDTA
Sbjct: 8 DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
G ERYRA+TSAYYRGA+GA++VYDI+K S+++ W+ ELR +AD ++ + LIGNKSDL
Sbjct: 68 GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELEC 200
+RAV ++A FA + + F+E SALN DNVD AF L+ I+ VSK +++
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDL 182
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 211 bits (536), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/171 (57%), Positives = 134/171 (78%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
++VFKVV+IG+S VGK+ +LSRFT+NEF DS++TIGVEF TRTV + +KAQIWDTA
Sbjct: 8 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
G ERYRA+TSAYYRGA+GA++V+D+TK Q++ V RW++EL HA+++I ++L+GNKSDL
Sbjct: 68 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
R V E+A FAE+ GL F E SAL+ NV+ AF +L+EI+ VSK+
Sbjct: 128 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 210 bits (535), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/180 (55%), Positives = 138/180 (76%), Gaps = 3/180 (1%)
Query: 20 MIP---DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI 76
++P + ++VFKVV+IG+S VGK+ +LSRFT+NEF DS++TIGVEF TRTV +
Sbjct: 14 LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73
Query: 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRI 136
+KAQIWDTAG ERYRA+TSAYYRGA+GA++V+D+TK Q++ V RW++EL HA+++I +
Sbjct: 74 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
Query: 137 ILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
+L+GNKSDL R V E+A FAE+ GL F E SAL+ NV+ AF +L+EI+ VSK+
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 121/169 (71%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
P Y+FK ++IGD VGKS +L +FT+ +F D TIGVEF TR + ++G+ IK QI
Sbjct: 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 68
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
WDTAGQER+RAVT +YYRGA GA++VYDIT+R +++H++ W+ + R + + IILIGN
Sbjct: 69 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128
Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
K+DL R V+ E+A +FAE+ GL F EASA G+NV+ AF ++IY
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 183 bits (464), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 120/169 (71%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
P Y+FK ++IGD VGKS +L +FT+ +F D TIGVEF TR + ++G+ IK QI
Sbjct: 24 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 83
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
WDTAGQ R+RAVT +YYRGA GA++VYDIT+R +++H++ W+ + R + + IILIGN
Sbjct: 84 WDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 143
Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
K+DL R V+ E+A +FAE+ GL F EASA G+NV+ AF ++IY
Sbjct: 144 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 114/164 (69%)
Query: 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
Y+FK ++IGD+ VGKS +L +FT F TIGVEF R +TI+GK IK QIWDTAG
Sbjct: 9 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
QE +R++T +YYRGA GA++VYDIT+R +F+H+ W+E+ R H++S++ I+LIGNKSDL
Sbjct: 69 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
R V E+ FA + GL F E SA NV+ AF +EIY
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
++P + Y+FK ++IGD+ VGKS +L +FT F TIGVEF R V I+GK IK
Sbjct: 14 LVP-RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKL 72
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI 139
QIWDTAGQE +R++T +YYRGA GA++VYDIT+R++F+H+ W+E+ R H+ S++ I+LI
Sbjct: 73 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI 132
Query: 140 GNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK 195
GNKSDL R V E+ FA + GL F E SA NV+ AF +EIY + +
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 118/174 (67%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D++FK +VIG + GKS +L +F +N+F DS TIGVEF +R V + GK +K QIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R+VT +YYRGA GA++VYDIT R++++ +A W+ + R A +I +IL GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 199
R V+ +A FA++ L F E SAL G+NV+ AF + + I + EL+
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 125/173 (72%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FK+++IG+S VGKS +L RF+ + + D STIGV+F+ +TV ++GK +K QIWDTA
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRG+ G ++VYD+T ++SF+ V W++E+ +A S++ +L+GNK DL
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
D R V + A EFA+ + F E SAL+ NV+ AF + ++I ++S++ L
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 120/172 (69%)
Query: 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDT 84
+DY+FK+++IGDS VGK+ +L RF+++ F STIG++F+ RT+ ++GK IK QIWDT
Sbjct: 3 MDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62
Query: 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144
AGQER+R +T+AYYRGA+G ++VYDIT +SFD++ W+ + HA + + +++GNK D
Sbjct: 63 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122
Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
+ D R VS E + A D G+ F E SA NV+ AFF L ++I + KK
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 125/173 (72%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FK+++IG+S VGKS +L RF+ + + D STIGV+F+ +TV ++GK +K QIWDTA
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRG+ G ++VYD+T ++SF+ V W++E+ +A S++ +L+GNK DL
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
D R V + A EFA+ + F E SAL+ NV+ AF + ++I ++S++ L
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 119/170 (70%), Gaps = 1/170 (0%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
M P+ DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+++ K +K
Sbjct: 2 MNPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKL 60
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI 139
QIWDTAGQER+R +TS+YYRGA G ++VYD+T R SFD+V +W++E+ +A ++ +L+
Sbjct: 61 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLV 120
Query: 140 GNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
GNK DLV R V++++ E A+ G+ F E SA N NV+ AF + EI
Sbjct: 121 GNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 118/170 (69%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FK+++IGDS VGK+ +L RF+++ F STIG++F+ RT+ ++GK IK QIWDTA
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +T+AYYRGA+G ++VYDIT +SFD++ W+ + HA + + +++GNK D+
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK 195
D R VS E + A D G+ F E SA NV+ AFF L ++I + K
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIK 78
+M P+ DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++GK IK
Sbjct: 8 SMNPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIIL 138
QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+ +A ++ +L
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+GNK DL + V A EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 127 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 115/164 (70%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++S+ +V +W++E+ +A ++ +L+GNKSDL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ V A EFA+ G+ F E SA N NV+ AF + EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 115/164 (70%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++S+ +V +W++E+ +A ++ +L+GNKSDL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ V A EFA+ G+ F E SA N NV+ AF + EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 167 bits (423), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 115/164 (70%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 23 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 82
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+ +A ++ +L+GNK DL
Sbjct: 83 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ V A EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 143 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 167 bits (423), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 115/164 (70%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+ +A ++ +L+GNK DL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ V A EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 124/173 (71%), Gaps = 2/173 (1%)
Query: 19 NMIP--DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI 76
+++P + DY+FK+++IG+S VGKS +L RF+ + + D STIGV+F+ +TV ++GK
Sbjct: 10 SLVPRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKT 69
Query: 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRI 136
+K QIWDTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ V W++E+ +A S++
Sbjct: 70 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 129
Query: 137 ILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+L+GNK DL D R V + A EFA+ + F E SAL+ NV+ AF + ++I
Sbjct: 130 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIK 78
+M P+ DY+FK+++IGDS VGK+ +L RF + + STIGV+F+ RT+ ++GK IK
Sbjct: 8 SMNPE-YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIIL 138
QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+ +A ++ +L
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+GNK DL + V A EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 127 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 166 bits (421), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 126/180 (70%), Gaps = 2/180 (1%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D + K+++IGDS VGKS +L RF +++F +TIG++F+ +TV INGK +K Q+WDTA
Sbjct: 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +T+AYYRGA+G ++VYD+T ++F ++ +W + + HA+ +++L+GNKSD+
Sbjct: 78 GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAV-SKKELECGNGK 204
+ R V+A+ A++ G+ F E+SA N DNV+ FF L + I + S K + GNGK
Sbjct: 138 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGK 196
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 120/179 (67%)
Query: 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
+ + D++FK +VIG++ GKS +L +F + +F DS TIGVEF ++ + + GK +K Q
Sbjct: 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG 140
IWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ + W+ + R A +I IIL G
Sbjct: 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 199
NK DL R V+ +A FA++ L F E SAL G+NV+ AF + ++I + EL+
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 114/164 (69%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 90
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+ +A ++ +L+GNK DL
Sbjct: 91 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ V A EFA+ G+ F E SA N NV+ +F EI
Sbjct: 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 164 bits (414), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 114/164 (69%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
DY+FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+ +A ++ +L+G K DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ V A EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 126 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 114/164 (69%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D +FK+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 4 DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+ +A ++ +L+GNK DL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ V A EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 120/166 (72%), Gaps = 4/166 (2%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D + K+++IGDS VGKS +L RF +++F +TIG++F+ +TV INGK +K QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +T+AYYRGA+G ++VYDIT ++F ++ +W + + HA+ +++L+GNKSD+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
+ R V+A+ A++ G+ F E+SA N DNV+ FF +L+QE
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 116/170 (68%), Gaps = 2/170 (1%)
Query: 22 PD-KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
PD + D++FK+V++GD++VGK+ ++ RF F STIGV+F +T+ I GK +K Q
Sbjct: 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG 140
IWDTAGQER+R +T +YYR A GA++ YDITKR SF V W+E++R +A S+I +LIG
Sbjct: 82 IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141
Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFS-EASALNGDNVDTAFFRLLQEI 189
NKSDL ++R VS +A AE + + E SA + NV+ AF R+ E+
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 160 bits (404), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 119/164 (72%), Gaps = 4/164 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ K+++IGDS VGKS +L RF +++F +TIG++F+ +TV INGK +K Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147
ER+R +T+AYYRGA+G ++VYD+T ++F ++ +W + + HA+ +++L+GNKSD+ +
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
R V+A+ A++ G+ F E+SA N DNV+ FF +L+QE
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 111/160 (69%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++GK IK QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149
+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+ +A ++ +L+GNK DL +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 150 AVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V A EFA+ G+ F E SA N NV+ +F + EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 118/166 (71%), Gaps = 4/166 (2%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D + K+++IGDS VGKS +L RF +++F +TIG++F+ +TV INGK +K QIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +T+AYYRGA G ++VYDIT ++F ++ +W + + HA+ +++L+GNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
+ R V+A+ A++ G+ F E+SA N DNV+ FF +L+QE
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 114/164 (69%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D++FK +VIG++ GKS +L +F + +F DS TIGVEF ++ + + GK +K QIWDTA
Sbjct: 9 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 68
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R+VT +YYRGA GA++VYDIT R++++ + W+ + R A +I IIL GNK DL
Sbjct: 69 GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 128
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V+ +A FA++ L F E SAL G++V+ AF + ++I
Sbjct: 129 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 157 bits (398), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 118/166 (71%), Gaps = 4/166 (2%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D + K+++IGDS VGKS +L RF +++F +TIG++F+ +TV INGK +K Q+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +T+AYYRGA G ++VYD+T ++F ++ +W + + HA+ +++L+GNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
+ R V+A+ A++ G+ F E+SA N DNV+ FF +L+QE
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D++FK+++IGDS VGKS +L RF N F +TIGV+F+ RTV ING+ +K QIWDTA
Sbjct: 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R +TS YYRG G +VVYD+T +SF +V RW+ E+ + D R IL+GNK+D
Sbjct: 67 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR-ILVGNKNDD 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
+ + V EDA +FA G+ E SA NV+ F
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 113/164 (68%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D++FK +VIG++ GKS +L +F + +F DS TIGVEF ++ + + GK +K QIWDTA
Sbjct: 6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 65
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
G ER+R+VT +YYRGA GA++VYDIT R++++ + W+ + R A +I IIL GNK DL
Sbjct: 66 GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V+ +A FA++ L F E SAL G++V+ AF + ++I
Sbjct: 126 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 113/170 (66%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
++P DY+FK+++IG+S+VGK+ L R+ + F ST+G++F+ +TV + K IK
Sbjct: 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI 139
QIWDTAGQERYR +T+AYYRGA+G +++YDI ++SF V W +++ ++ + ++IL+
Sbjct: 74 QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 140 GNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
GNK DL D R V AED A+D G F EASA NV F RL+ I
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 108/160 (67%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD GKS ++ RF K++F +STIG F ++T+ +N +K +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149
Y ++ YYRGA A++V+D+T + SF+ +WV+EL+A + ++ + L GNKSDL+D R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 150 AVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
V+AEDA +A++ GLFF E SA NV F+ + + +
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 108/160 (67%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D++FK+V+IG++ VGK+ ++ RFT+ F +TIGV+F +TV ING+ +K QIWDTA
Sbjct: 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
GQER+R++T +YYR A ++ YDIT +SF + W+ E+ +A + + +L+GNK DL
Sbjct: 84 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
+ R VS + A EF+E Q +++ E SA DNV+ F L
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 108/168 (64%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF WV+EL+ A +I I L GNK+DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVN--------EIFXAIAKK 167
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 112/165 (67%)
Query: 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDT 84
DY+FK+++IG+S+VGK+ L R+ + F ST+G++F+ +T+ N K IK QIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144
AGQERYR +T+AYYRGA+G +++YDIT +SF+ V W +++ ++ + +++L+GNK D
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ D R VS+E + A+ G F EASA + NV F RL+ I
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
P D+ +V++IG VGK+ ++ RFT + F KST+GV+F+ +TV + GK I+ QI
Sbjct: 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
WDTAGQER+ ++TSAYYR A G ++VYDITK+++FD + +W++ + +A ++L+GN
Sbjct: 80 WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139
Query: 142 KSDLVDMRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
K D R ++ + +FA+ G+ F EASA + NVD F +L+ +I
Sbjct: 140 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 108/168 (64%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF WV+EL+ A +I I L GNK+DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 108/168 (64%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF WV+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 105/161 (65%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T++V ++ +K +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +++F WV+EL+ A SI I L GNK+DL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V E+A +A+D L F E SA NV+ F + +++
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+S VGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF WV+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+S VGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF WV+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+S VGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF WV+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+S VGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF WV+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+S VGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF WV+EL+ A +I I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 106/168 (63%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +F WV+EL+ A +I I L GNK+DL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVN--------EIFMAIAKK 163
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +SF WV+EL+ A +I I L GNK+DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 165
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 146 bits (369), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 17 QENM-IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK 75
+EN+ DY+FK+++IG+S+VGK+ L R+ + F ST+G++F+ +TV + K
Sbjct: 11 RENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 70
Query: 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR 135
+K QIWDTAGQERYR +T+AYYRGA+G +++YDIT +SF+ V W +++ ++ + +
Sbjct: 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ 130
Query: 136 IILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+IL+GNK D+ + R V E AE G F EASA +V AF RL+ I
Sbjct: 131 VILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STIG F T+TV ++ +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +F WV+EL+ A +I I L GNK+DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVN--------EIFMAIAKK 165
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 107/165 (64%)
Query: 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDT 84
DY FK+++IG+S+VGK+ L R+ + F ST+G++F+ +T+ N K IK QIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144
AG ERYR +T+AYYRGA G ++ YDIT +SF+ V W +++ ++ + +++L+GNK D
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
D R VS+E + A+ G F EASA + NV F RL+ I
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 8/168 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++G+SAVGKS ++ RF K +F +STI F T+TV ++ +K +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
RY ++ YYRGA A+VVYDIT +F WV+EL+ A +I I L GNK+DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
RAV ++A +A+D L F E SA NV+ EI+ A++KK
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVN--------EIFMAIAKK 165
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
KV ++GD+ VGKS I+ RF ++ F + TIG F T+TV ++ K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+ ++ YYRG+ AV+VYDITK+ SF + +WV+EL+ H +I + + GNK DL D+
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V +DA E+AE G E SA N N++ F + ++I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 143 bits (361), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 98/161 (60%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
KV ++GD+ VGKS I+ RF ++ F + TIG F T+TV ++ K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+RA+ YYRG+ A++VYDITK ++F + WV ELR H SI + + GNK DL D+
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V DA ++A+ F E SA N N++ F + + I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 108/168 (64%), Gaps = 1/168 (0%)
Query: 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQI 81
D D FKV+++GDS VGK+ +L RF F + ST+G++F+ + + ++G +K Q+
Sbjct: 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 64
Query: 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
WDTAGQER+R+VT AYYR A +++YD+T + SFD++ W+ E+ +A + ++L+GN
Sbjct: 65 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
K D R V ED + A++ GL F E SA G NVD AF + +E+
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 104/163 (63%), Gaps = 3/163 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++G++AVGKS I+ RF N+F + + TIG F T+ VTIN +K +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD-- 147
+ ++ YYR A A+VVYD+TK QSF WV+EL A I I L+GNK D +
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 148 -MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V+ E+ + AE++GL F E SA G+NV+ F + ++I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 97/161 (60%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
KV ++GD+ VGKS I+ RF ++ F + TIG F T+TV ++ K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+RA+ YYRG+ A++VYDITK ++F + WV ELR H SI + + GNK DL D+
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V DA ++A+ F E SA N N++ F + + I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 112/175 (64%), Gaps = 11/175 (6%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--------GKII 77
DY+ K++ +GDS VGK+ L R+T N+F +T+G++F+ + V N GK
Sbjct: 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 78 KA--QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSI 134
K Q+WDTAGQER+R++T+A++R A+G ++++D+T +QSF +V W+ +L+A+A +
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
I+LIGNK+DL D R V+ A E A+ G+ + E SA G NV+ A LL I
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 11/175 (6%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN----------GK 75
DY+ K + +GDS VGK+ +L ++T +F +T+G++F+ + V G+
Sbjct: 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SI 134
I Q+WDTAG ER+R++T+A++R A+G ++++D+T QSF +V W+ +L+ HA S +
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
I+L GNKSDL D RAV E+A E AE G+ + E SA NG N+ A LL I
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
K+++IG+S VGKS +L RFT + F + +TIGV+F+ +T++++G K IWDTAGQ
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLV 146
ER+R +T +YYRGA G ++VYD+T+R +F + W+ EL + + I L+GNK D
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ R V + ++FA F EASA D V AF L+++I
Sbjct: 134 ENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 133 bits (335), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 103/154 (66%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+V +G+ AVGK+ I++RF + F + +STIG++F ++T+ ++ ++ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + A+VVYDIT RQSF++ +W++++ + I L+GNK+DL D+
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
R V+ E+ + A++ F E SA G N+ F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 133 bits (334), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 104/163 (63%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + I+ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF +W++++R S + I+L+GNK+DL D
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R VS E+ A++ + F E SA G NV F R+ + G
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 169
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+V+ GD+AVGKS L R KNEF + +T+GV+FQ +T+ ++G+ Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y+R A G +++YD+T +SF ++ WV+ + A ++ I+L+GNK+D+ D
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 149 RAVSAEDAV------EFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
A + V + A G F E SA +G N+ A L +E+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 105/163 (64%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + ++ Q+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF ++W++++R S + I+L+GNK+DL D
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R VS E+ A++ + F E SA G NV F R+ + G
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 106/169 (62%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + I+ Q+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF +W++++R S + I+L+GNK+DL D
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
R VS E+ A++ + F E SA G NV F R+ + G S ++
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 182
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 88/115 (76%)
Query: 31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY 90
+++IGDS VGKS +L RF + + STIGV+F+ RT+ ++GK IK QIWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
R +TS+YYRGA G +VVYD+T ++SF++V +W++E+ +A ++ +L+GNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 104/157 (66%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + ++ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF ++W++++R S + I+L+GNK+DL D
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
R ++ E+ + A++ + F E SA G NV F R+
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 113/181 (62%), Gaps = 11/181 (6%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--------GKII 77
DY+ K++ +GDS VGK+ L R+T N+F +T+G++F+ + V + GK
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 78 KA--QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SI 134
K Q+WDTAG ER+R++T+A++R A+G ++++D+T +QSF +V W+ +L+A+A +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS 194
I+LIGNK+DL D R V+ A E AE G+ + E SA G NV+ + LL I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 195 K 195
K
Sbjct: 189 K 189
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 102/157 (64%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + ++ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF +W++++R S + I+L+GNK+DL D
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
R VS E+ A++ + F E SA G NV F R+
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 106/169 (62%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + ++ Q+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF +W++++R S + I+L+GNK+DL D
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
R VS E+ A++ + F E SA G NV F R+ + G S ++
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 185
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 130 bits (326), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 113/181 (62%), Gaps = 11/181 (6%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--------GKII 77
DY+ K++ +GDS VGK+ L R+T N+F +T+G++F+ + V + GK
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 78 KA--QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSI 134
K Q+WDTAG ER+R++T+A++R A+G ++++D+T +QSF +V W+ +L+A+A +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS 194
I+LIGNK+DL D R V+ A E AE G+ + E SA G NV+ + LL I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 195 K 195
K
Sbjct: 189 K 189
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 106/169 (62%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V +G+ +VGK+ +++RF + F ++TIG++F ++T+ + + ++ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
R+R++ +Y R + AVVVYDIT SF +W++++R S + I+L+GNK+DL D
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
R VS E+ A++ + F E SA G NV F R+ + G S ++
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 175
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 95/163 (58%)
Query: 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
Y FKVV++G+ VGK+ ++ R+ +N+F +T+G F T+ + I GK + IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
QER+ A+ YYR + GA++VYDIT SF V WV+ELR + I + ++GNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R VS ++A +AE G SA ++ F L + +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 11/175 (6%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--------GKII 77
DY+ K++ +GDS VGK+ L R+T N+F +T+G++F+ + V + GK
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 78 KA--QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSI 134
K Q+WDTAG ER+R++T+A++R A G ++ +D+T +QSF +V W +L+A+A +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
I+LIGNK+DL D R V+ A E AE G+ + E SA G NV+ + LL I
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 11/175 (6%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--------GKII 77
DY+ K++ +GDS VGK+ L R+T N+F +T+G++F+ + V + GK
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 78 KA--QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSI 134
K Q+WDTAG ER+R++T+A++R A G ++ +D+T +QSF +V W +L+A+A +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
I+LIGNK+DL D R V+ A E AE G+ + E SA G NV+ + LL I
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 94/163 (57%)
Query: 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
Y FKVV++G+ VGK+ ++ R+ +N+F +T+ F T+ + I GK + IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
QER+ A+ YYR + GA++VYDIT SF V WV+ELR + I + ++GNK DL
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R VS ++A +AE G SA ++ F L + +
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 94/163 (57%)
Query: 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
Y FKVV++G+ VGK+ ++ R+ +N+F +T+ F T+ + I GK + IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
QER+ A+ YYR + GA++VYDIT SF V WV+ELR + I + ++GNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R VS ++A +AE G SA ++ F L + +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 99/167 (59%), Gaps = 5/167 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+FK++VIGDS VGK+ + RF F +++TIGV+F+ R V I+G+ IK Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 88 ERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDL 145
ER+R ++ YYR V VYD+T SF + W+EE + H ++ I IL+GNK DL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALN---GDNVDTAFFRLLQEI 189
V + A +FA+ + E SA N D+V+ F L ++
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
+P +FK++VIGDS VGK+ + RF F +++TIGV+F+ R V I+G+ IK Q
Sbjct: 22 LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 81 IWDTAGQERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIIL 138
+WDTAGQER+R ++ YYR V VYD T SF + W+EE + H ++ I IL
Sbjct: 82 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRIL 141
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN---GDNVDTAFFRLLQEI 189
+GNK DL V + A +FA+ E SA N D+V+ F L ++
Sbjct: 142 VGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 11/164 (6%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-KIIKAQIWDTAG 86
+ KV+++GDS VGK+ ++ R+ +++ K+TIG +F T+ VT++G K+ Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNK 142
QER++++ A+YRGA V+VYD+T SF+++ W +E HA+ + +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 143 SDLVDMRA-VSAEDAVEFAEDQG---LFFSEASALNGDNVDTAF 182
D + + VS + A E A+ G LF + SA N NVDTAF
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLT--SAKNAINVDTAF 169
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+FK++++GD VGKS +++R+ N+F TIGVEF + + ++G + QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKS 143
ER+R++ + +YRG+ ++ + + QSF +++ W +E +AD S +++GNK+
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 144 DLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
D+ + R VS E+A + +D G + + E SA + NV AF
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+FKV+++GD VGKS +++R+ N+F TIGVEF + + ++G + QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKS 143
ER+R++ + +YRG+ ++ + + QSF +++ W +E +AD S +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 144 DLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
D+ + R VS E+A + D G + + E SA + NV AF
Sbjct: 127 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+FKV+++GD VGKS +++R+ N+F TIGVEF + + ++G + QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKS 143
ER+R++ + +YRG+ ++ + + QSF +++ W +E +AD S +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 144 DLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
D+ + R VS E+A + D G + + E SA + NV AF
Sbjct: 129 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ KV+++GD VGKS +++R+ N+F + TIGVEF R + ++G+ + QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKS 143
ER++++ + +YRGA ++ + + RQSF+++ W +E +AD +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 144 DLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
D D R V+ E+A + + G + + E SA + NV AF
Sbjct: 127 DKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+VV+G+ AVGKS ++ R+ K F D K TIGV+F R + +N + ++ +WDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149
+ A+T AYYRGA V+V+ T R+SF+ ++ W E++ A I L+ NK DL+D
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDS 125
Query: 150 AVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
+ E+A A+ L F S NV F
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 98/202 (48%), Gaps = 40/202 (19%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI---------------- 72
+K V++G+S+VGKS I+ R TK+ F ++ +TIG F T V +
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 73 ---------------------NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT 111
N IK IWDTAGQERY ++ YYRGA A+VV+DI+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 112 KRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEAS 171
+ D WV +L+ S+ IIL+ NK D + V + ++A+D L F + S
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTS 184
Query: 172 ALNGDNVDTAFFRLLQEIYGAV 193
A G N+ F+ L +EIY +
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ KV+++G VGKS + +F +EF D + T ++ + V ++G+ ++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLV 146
E Y A+ Y+R G + V+ IT+ +SF A + E+ LR D ++ +L+GNKSDL
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
D R VS E+A AE + + E SA NVD FF L++EI
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++G+ ++ I DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDM 148
Y A+ Y+R G + V+ IT+ +SF A + E+ LR D ++ +L+GNKSDL D
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R VS E+A AE + + E SA NVD FF L++EI
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++G+ ++ I DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDM 148
Y A+ Y+R G + V+ IT+ +SF A + E+ LR D ++ +L+GNKSDL D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R VS E+A AE + + E SA NVD FF L++EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ KV+++GDS VGK+ +++++ +F K+TIG +F T+ V ++ +++ QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS----SIRIILIGNKS 143
ER++++ A+YRGA V+V+D+T +F + W +E A + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
DL + + + + + E SA NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ KV+++GDS VGK+ +++++ +F K+TIG +F T+ V ++ +++ QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS----SIRIILIGNKS 143
ER++++ A+YRGA V+V+D+T +F + W +E A + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
DL + + + + + E SA NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 4/167 (2%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI-IKAQIWDTAGQ 87
K+VV+GD A GK+ + + F + F K TIG++F R +T+ G + + QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARW---VEELRAHADSSIRIILIGNKSD 144
+ Y GA G ++VYDIT QSF+++ W V+++ +++ + L+GNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
L MR + E + F ++ G SA GD+V F ++ EI G
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++G+ ++ I DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDM 148
Y A+ Y+R G + V+ IT+ +SF A + E+ LR D ++ +L+GNKSDL D
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R VS E+A A+ + + E SA NVD FF L++EI
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ KV+++GDS VGK+ +++++ +F K+TIG +F T+ V ++ +++ QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS----SIRIILIGNKS 143
ER++++ A+YRGA V+V+D+T +F + W +E A + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
D + + + + + E SA NV+ AF
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++G+ ++ I DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDM 148
Y A+ Y+R G + V+ IT+ +SF A + E+ LR D ++ +L+GNKSDL D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R VS E+A AE + + E SA NVD FF L++EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ KV+++GDS VGK+ +++++ +F K+TIG +F T+ V ++ +++ QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS----SIRIILIGNKS 143
ER++++ A+YRGA V+V+D+T +F + W +E A + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
DL + + + + + E SA NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ KV+++G VGKS + +F +EF D + T ++ + V ++G+ ++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADS-SIRIILIGNKSDL 145
E Y A+ Y+R G ++V+ IT+ +SF A + E+ LR A+ I ++++GNKSDL
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ R V E+A AE+ G+ + E SA NVD FF L++EI
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
KV+++G VGKS + +F +EF D + T ++ + V ++G+ ++ I DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y+R G ++V+ IT+ +SF A + E+ LR A+ I ++++GNKSDL +
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V E+A AE+ G+ + E SA NVD FF L++EI
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
+Y + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 133
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 134 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNKSDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ F E SA VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
+K+ +IGD VGK+ ++R F + +T+G V + G +IK +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147
E+ + YY GA GA++ +D+T R + ++ARWV+E +A + I++ NK D+ +
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
+ +S + +E + + + E SA N F L
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 121
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 122 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++ +D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ F E SA VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 124
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 125 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 166
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +T+GVE N IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 130
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 131 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 172
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R E +T+GVE N IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D+ D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 133
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ V F + L + + SA + N + F L +++ G
Sbjct: 134 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +TIGVE + N IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D V
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 130
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGP 208
R V A+ + F + L + + SA + N + F L +++ G +LE P
Sbjct: 131 RKVKAK-TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG---NPQLEFVASPALAP 186
Query: 209 P 209
P
Sbjct: 187 P 187
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +TIGVE + N IK +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D V
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 123
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ + F + L + + SA + N + F L +++ G
Sbjct: 124 RKVKAK-TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 165
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
FK+V++GD GK+ + R EF +TIGVE + N IK +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
++ + YY A A++++D+T R ++ +V W +L +I I+L GNK D V
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 122
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
R V A+ + F + L + + SA + N + F L +++ G
Sbjct: 123 RKVKAK-TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 164
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K V +GD AVGK+ +L +T N F D T+ F + V ++G + +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM 148
Y + YRGA ++ + + + S+++VA +W+ ELR H + IIL+G K DL D
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
Query: 149 RA--VSAEDAVEFAEDQG 164
+ + AV +QG
Sbjct: 126 KQFFIDHPGAVPITTNQG 143
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 9/170 (5%)
Query: 30 KVVVIGDSAVGKSQILSRFTK--NEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW--DTA 85
KV V+G++ VGKS ++S FT ++F D T GVE VTI + +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL---RAHADSSIRIILIGNK 142
G + Y+ S Y+ G A++V+D++ +SF+ W E L R + +R +L+ NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 143 SDLVDMR-AVSAEDAVEFAEDQGL-FFSEASALNGDNVDTAFFRLLQEIY 190
+DL R V + A ++A L FF ++ G + D F + Y
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 12/181 (6%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K V +GD AVGK+ +L +T N+F D T+ F V ++G+I+ +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + YRGA V+ + + + S+++V +W+ ELR A ++ I+L+G K DL D
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127
Query: 148 MRAVSAEDAVEFAEDQG---------LFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
+ A+ QG + E S+ NV F ++ + +KE+
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEV 187
Query: 199 E 199
Sbjct: 188 P 188
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K V +GD AVGK+ +L +T N F D T+ F + V +NG + +WDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQED 68
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD 147
Y + YRGA ++ + + + S+++V+ +W+ EL+ H + I+L+G K DL D
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLRD 126
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
KVV++G VGK+ + +F + EF T+ + ++ VT+ + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKSDLVDM 148
Y + ++ G G V+VY +T SF + ++L H + + ++L+GNK+DL
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V A + + AE G F E+SA F +++QEI
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 183 FRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLS 233
F++++ +Y ++L G+GK P +L G+K D+ +++ E KKL+
Sbjct: 111 FQVIESLY-----QKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA 156
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+ + G + VGKS ++ RF F ++ T+ ++ + TI+ +++ +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 88
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARW---VEELRAHADSSIRIILIGNKSDLV 146
+ R G V+VYDIT R SF+ V ++E++ ++ +IL+GNK+DL
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLD 145
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
R VS E+ + A + F E SA G+ N+ F+ L +E+
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNKSDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ F E SA VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNKSDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ F E SA VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNKSDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 18/188 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + V ++GK + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIY--GA 192
+ ++ + A++ G + + E SAL + T F ++ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 193 VSKKELEC 200
V K++ +C
Sbjct: 182 VKKRKRKC 189
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+I I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNKSDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 16/173 (9%)
Query: 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
K+ K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WD
Sbjct: 3 KLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWD 61
Query: 84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNK 142
TAGQE Y + Y +++ + + SF++V A+W E+R H ++ IIL+G K
Sbjct: 62 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTK 120
Query: 143 SDLVD------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
DL D + ++ + A++ G + + E SAL + T F
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 123
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y +++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + + E+++ DS + ++L+GNK DL
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ F E SA VD AF+ L++EI
Sbjct: 141 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + +F + F TI ++ + V ++ + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
++ A+ Y + G +VY IT + +F+ + E+ LR + +IL+GNK DL D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 148 MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
R V E A F E+SA + NV+ F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K V +GD AVGK+ +L +T N F D T+ F V ++G + +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + YRGA ++ + + + S++++ +W+ EL+ H I I+L+G K DL D
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRD 124
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + +F + F + TI ++ + V ++ + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
++ A+ Y + G +VY IT + +F+ + E+ LR + +IL+GNK DL D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 148 MRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFRLLQEI 189
R V E A F E+SA + NV+ F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 41 KSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG 100
KS + +F ++ F D TI + T+ +++G + I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 101 ALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEF 159
G ++V+ I RQSF+ V + + + LR ++L+GNK+DL R V +A F
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ + EASA NVD AF +L++ +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + V ++GK + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIY--GA 192
+ ++ + A++ G + + E SAL + T F ++ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 193 VSKKELEC 200
V K++ +C
Sbjct: 182 VKKRKRKC 189
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 70 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 128
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 129 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + +F + F TI ++ + V ++ + +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
++ A+ Y + G +VY IT + +F+ + E+ LR + +IL+GNK DL D
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 148 MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
R V E A F E+SA + NV+ F+ L+++I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF + + E+++ DS + ++L+GNK DL
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
R V + A E A+ G+ F E SA V+ AF+ L++EI KK
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + +F + F TI ++ + V ++ + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
++ A+ Y + G +VY IT + +F+ + E+ LR + +IL+GNK DL D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 148 MRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFRLLQEI 189
R V E A F E+SA + NV+ F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + +I ++ + V I+G+ I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 127
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 128 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 149
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GN+ DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQED 82
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 141
Query: 148 -----------MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ ++ + A++ G + E SAL + T F
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGK+ + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + +I ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 41 KSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG 100
KS + +F ++ F D TI + T+ I+ + + I DTAGQE + A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 101 ALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEF 159
G ++V+ +T R SF+ + ++ + LR +ILIGNK+DL R V+ E+ +
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
A + + EASA NVD AF L++ I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQED 73
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 132
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 128
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
R V + A + A G+ + E SA V+ AF+ L++E
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + V ++GK + +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIY--GA 192
+ ++ + A++ G + + E SAL + T F ++ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 193 VSKKELEC 200
V K++ +C
Sbjct: 182 VKKRKRKC 189
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + V ++GK + +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H + I+L+G K DL D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRD 122
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIYGA 192
+ ++ + A + G + + E SAL + T F ++ + G
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLGG 180
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ K VV+GD AVGK+ +L +T N F + T+ + V ++GK + +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLV 146
E Y + Y ++ + + SF HV A+W E+R H ++ IIL+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
D + ++ + A++ G + + E SAL + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N F + T+ + V ++GK + +WDTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 64
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y ++ + + SF++V A+W E+R H + I+L+G K DL D
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRDD 123
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIYG 191
+ ++ + A + G + + E SAL + T F ++ + G
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + V ++GK + +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIY--GA 192
+ ++ + A++ G + + E SAL + T F ++ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 193 VSKKELEC 200
V K++ +C
Sbjct: 182 VKKRKRKC 189
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ K VV+GD AVGK+ +L +T N F + T+ + V ++GK + +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLV 146
E Y + Y ++ + + SF HV A+W E+R H ++ IIL+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
D + ++ + A++ G + + E SAL + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ K VV+GD AVGK+ +L +T N F + T+ + V ++GK + +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLV 146
E Y + Y ++ + + SF HV A+W E+R H ++ IIL+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
D + ++ + A++ G + + E SAL + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N + T+ + + V ++GK + +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 148
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+ ++G +VGKS + +F + +F TI F T+ +T+NG+ Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV--EELRAHADSSIRIILIGNKSDLVD 147
Y Y G ++VY +T +SF+ V + + + L I I+L+GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGK 204
R +S E+ AE F E+SA F R++ E K + C GK
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE----AEKMDGACSQGK 178
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N F + T+ + V ++GK + +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y ++ + + SF++V A+W E+R H + I+L+G K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A + G + + E SAL + T F
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + S+++V A+W E+R H S+ IIL+G K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 121
Query: 148 ----MRAVSAEDAVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + QGL + E SAL + T F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 35/187 (18%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 89 RYRAVTSAYYRGALGAVVVYDITKR-------------------QSFDHV-ARWVEELRA 128
Y + Y +G DIT R SF++V A+W E+R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 129 HADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQG-LFFSEASALNG 175
H ++ IIL+G K DL D + ++ + A++ G + + E SAL
Sbjct: 125 HCPNT-PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 176 DNVDTAF 182
+ T F
Sbjct: 184 RGLKTVF 190
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
Y A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+G VGKS + + +N F + TI ++ + V I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
A+ Y R G + V+ I +SF+ + ++ E+++ DS + ++L+GNK DL
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R V + A + A G+ + E SA V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + V ++GK + +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 65
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 124
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N F + T+ + + V ++GK + +WDTAG E
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y ++ + + SF++V A+W E+R H ++ IIL+G K DL D
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 149
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ ++ + A++ G + + E SAL + T F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+ ++G +VGKS + +F + +F + TI F T+ +T+NG+ Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV--EELRAHADSSIRIILIGNKSDLVD 147
Y Y G ++VY +T +SF+ V + + + L I I+L+GNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
R +S E+ AE F E+SA F R++ E
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 68
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + S+++V A+W E+R H S+ IIL+G K DL D
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 127
Query: 148 ----MRAVSAEDAVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + QGL + E SAL + T F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
KVV++GD GK+ +L F F T+ + + + GK + IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + +Y A ++ +D+T SFD++ RW E+ H + II++G K+DL
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
+ V+ E A G + + E SA DNV F
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+ ++G +VGKS + +F + +F TI F T+ +T+NG+ Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV--EELRAHADSSIRIILIGNKSDLVD 147
Y Y G ++VY +T +SF+ V + + + L I I+L+GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
R +S E+ AE F E+SA F R++ E
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K VV+GD AVGK+ +L +T N F + T+ + + V ++ K + +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 69
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
Y + Y ++ + + S+++V A+W E+R H S+ IIL+G K DL D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 128
Query: 148 ----MRAVSAEDAVEFAEDQGLFFS---------EASALNGDNVDTAF 182
+ + + QGL + E SAL + T F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K V++GD AVGK+ ++ +T N + + T F + V+++G+ ++ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
+ + Y ++ + + SF +V+ +WV E+R H + IIL+G +SDL
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-PIILVGTQSDLRED 139
Query: 146 ---------VDMRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ V E A AE+ + + E SAL N+ F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+ ++G +VGKS + +F + +F TI F T+ +T+NG+ Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV--EELRAHADSSIRIILIGNKSDLVD 147
Y Y G ++VY +T +SF+ V + + + L I I+L+GNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
R +S E+ AE F E+SA F R++ E
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+GD VGKS + +F + F D TI + T I+ + + DTAGQE
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
+ A+ Y R G ++VY +T + SF+HV R+ + LR S +IL+ NK DL+
Sbjct: 73 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
+R V+ + E A + + E SA + NVD F L++ I
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+K+VV+GD VGKS + +F + F D TI + T I+ + + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 77
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
+ A+ Y R G ++VY +T + SF+HV R+ + LR S +IL+ NK DL+
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
+R V+ + E A + + E SA + NVD F L++ I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 3/171 (1%)
Query: 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
+P + +K+VV+GD VGKS + +F + F + TI ++ T I+ +
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILD 69
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILI 139
+ DTAGQE + A+ Y R G ++VY +T + SF+HV R+ + LR S +IL+
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 140 GNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
NK DL+ +R V+ + E A + + E SA + NVD F L++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 123
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 132
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 3/171 (1%)
Query: 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
+P + +K+VV+GD VGKS + +F + F + TI + T I+ +
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILD 69
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILI 139
+ DTAGQE + A+ Y R G ++VY +T + SF+HV R+ + LR S +IL+
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 140 GNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
NK DL+ +R V+ + E A + + E SA + NVD F L++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDL 141
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+VV+GD A GK+ +L F+K+EF T+ E + ++GK ++ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
Y + Y ++ + + S +++ +WV E++ H ++ IIL+ NK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDL 141
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
Y Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L F+K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 141
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 5/161 (3%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
++V V G VGKS ++ RF K F T+ ++ + ++ + I QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVE---ELRAHADSSIRIILIGNKSDL 145
++ A+ ++VY IT RQS + + E E++ + SI I+L+GNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-SIPIMLVGNKCDE 121
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186
R V + +A A F E SA NV F LL
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ + DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + + + TV I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+ + T+ + TV I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+ K VV+GD AVGK+ +L + + F + T+ + +VT+ GK ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLV 146
E Y + Y ++ + + SF +V WV EL+ +A ++ +LIG + DL
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 147 D------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
D + + E + A++ G + E SAL + T F
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K VV+GD AVGK+ +L +T N+F + T+ + TV I G+ ++DTAG E
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
Y + Y +V + + SF++V +WV E+ H + +L+G + DL D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
+ ++ E A + A D + + + E SAL + F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K+VV+GD AVGK+ +L F+K E T+ F N + I +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 82
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
Y + Y + ++ + + R SFD+++ +W E++ + D++ + +L+G K DL
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDL 139
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
K+VV+GD AVGK+ +L F+K E T+ F N + I +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 81
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
Y + Y + ++ + + R SFD+++ +W E++ + D++ + +L+G K DL
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDL 138
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+VV+GDS GK+ +L F K+ F + T+ E T + I+ + I+ +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDL 145
Y V Y + ++ +DI++ ++ D V +W E++ ++ +++L+G KSDL
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDL 144
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+VV+GDS GK+ +L F K+ F + T+ E T + I+ + I+ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDL 145
Y V Y + ++ +DI++ ++ D V +W E++ ++ +++L+G KSDL
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDL 123
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+VV+GDS GK+ +L F K+ F + T+ E T + I+ + I+ +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDL 145
Y V Y + ++ +DI++ ++ D V +W E++ ++ +++L+G KSDL
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDL 139
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++GK ++ +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
+ V E+ + A G F + E SA D V F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Query: 28 VFKVVVIGDSAVGKSQILSRFT-KNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
+++VV++GD VGK+ + S F K E D +G + RT+T++G+ + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQER--DLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 87 QERYRAVTS--AYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKS 143
E+ S + +G V+VY I R SF+ + +LR H + IIL+GNK+
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
DL R VS E+ A F E SA NV F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGK---IIKAQIWDT 84
++VV+IG+ VGKS + + F DS +G + RT+ ++G+ II +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85 AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIIL 138
G+ + V AY ++VY IT R SF+ + +LR A I IIL
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+GNKSDLV R VS + A F E SA NV F +++++
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGK---IIKAQIWDT 84
++VV+IG+ VGKS + + F DS +G + RT+ ++G+ II +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 85 AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIIL 138
G+ + V AY ++VY IT R SF+ + +LR A I IIL
Sbjct: 98 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+GNKSDLV R VS + A F E SA NV F +++++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K++F T+ E + ++GK ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
Y + Y ++ + I S +++ +W E++ H ++ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGK---IIKAQIWDT 84
++VV+IG+ VGKS + + F DS +G + RT+ ++G+ II +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85 AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIIL 138
G+ + V AY ++VY IT R SF+ + +LR A I IIL
Sbjct: 67 KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+GNKSDLV R VS + A F E SA NV F +++++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGK---IIKAQIWDT 84
++VV+IG+ VGKS + + F DS +G + RT+ ++G+ II +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85 AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIIL 138
G+ + V AY ++VY IT R SF+ + +LR A I IIL
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+GNKSDLV R VS + A F E SA NV F +++++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
K+V++GD A GK+ +L +K +F T+ E V ++G+ ++ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
Y + Y + ++ + I S ++V +W+ E+ H + IIL+G K DL
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDL 126
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 41 KSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG 100
KS + +F F TI +F + + ++ +I DTAG E++ ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 101 ALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIRIILIGNKSDLVDMRAVSAEDAVEF 159
G ++VY + +QSF + +++ R + +IL+GNK DL R VS+ +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
AE+ G F E SA + VD F +++++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD GQ
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 376
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 434
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
L D M+ ++ + D+ + + A +GD +
Sbjct: 435 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING--KIIKA 79
P + K+V++GD GK+ +L K+ + ++ + F+ T + + ++
Sbjct: 5 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVEL 61
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIIL 138
+WDT+G Y V Y + ++ +DI++ ++ D + +W E+ + S+ R++L
Sbjct: 62 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-RVLL 120
Query: 139 IGNKSDL 145
IG K+DL
Sbjct: 121 IGCKTDL 127
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 20/179 (11%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING--KIIKA 79
P + K+V++GD GK+ +L K+ + ++ + F+ T + + ++
Sbjct: 4 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVEL 60
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIIL 138
+WDT+G Y V Y + ++ +DI++ ++ D + +W E+ + S+ R++L
Sbjct: 61 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-RVLL 119
Query: 139 IGNKSDL-VDMR-----------AVSAEDAVEFAEDQGL-FFSEASALNGDNVDTAFFR 184
IG K+DL D+ +S E A+ G + E SA + + FR
Sbjct: 120 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 178
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 112
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
L D M+ ++ + D+ + + A +GD +
Sbjct: 113 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING--KIIKA 79
P + K+V++GD GK+ +L K+ + ++ + F+ T + + ++
Sbjct: 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVEL 77
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIIL 138
+WDT+G Y V Y + ++ +DI++ ++ D + +W E+ + S+ R++L
Sbjct: 78 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-RVLL 136
Query: 139 IGNKSDL 145
IG K+DL
Sbjct: 137 IGCKTDL 143
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD GQ
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 125
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
L D M+ ++ + D+ + + A +GD +
Sbjct: 126 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD GQ
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 66
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 124
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
L D M+ ++ + D+ + + A +GD +
Sbjct: 125 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 161
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 112
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
L D M+ ++ + D+ + + A +GD +
Sbjct: 113 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
V+KV+++G VGKS + F E ++++ G + R++ ++G+ ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKSDLV 146
+ R + V+VY +T + SF+ + +LR A + IIL+GNKSDLV
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R VS ++ A F E SA NV F ++++I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
V+KV+++G VGKS + F E ++++ G + R++ ++G+ ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKSDLV 146
+ R + V+VY +T + SF+ + +LR A + IIL+GNKSDLV
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R VS ++ A F E SA NV F ++++I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
V+KV+++G VGKS + F E ++++ G + R++ ++G+ ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKSDLV 146
+ R + V+VY +T + SF+ + +LR A + IIL+GNKSDLV
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
R VS ++ A F E SA NV F ++++I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
++P ++ ++G GK+ ++ +F D T+G F R VT IK
Sbjct: 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK- 70
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIIL 138
IWD GQ R+R++ Y RG V + D R+ + + L I +++
Sbjct: 71 -IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLV 129
Query: 139 IGNKSDL---VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
+GNK DL +D + + + + +D+ + S DN+D L+Q
Sbjct: 130 LGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD G
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 67
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 125
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
L D M+ ++ + D+ + + A +GD +
Sbjct: 126 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD G
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 56
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 57 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 114
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
L D M+ ++ + D+ + + A +GD +
Sbjct: 115 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 151
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
+++++G A GK+ IL + + S +TI V F TVT K +K +WD G
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 57
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
++ R + YY G G + V D R D + E R D +R I++ NK D
Sbjct: 58 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 115
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
L D M+ ++ + D+ + + A +GD +
Sbjct: 116 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 152
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQE 88
+++ +G A GK+ IL + + S +TI V F TVT K +K +WD GQ+
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 55
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVD 147
+ R + YY G G + V D R D + + + + IILI NK DL D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD 115
Query: 148 M---RAVSAEDAVEFAEDQGLFFSEASALNGDNV 178
+ + + D+ + + A +GD +
Sbjct: 116 AXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
++P ++ ++G GK+ ++ +F D T+G F R +T IK
Sbjct: 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK- 70
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIIL 138
+WD GQ R+R++ Y RG V + D ++ + + L I +++
Sbjct: 71 -LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 129
Query: 139 IGNKSDL---VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
+GNK DL +D + + + + +D+ + S DN+D L+Q
Sbjct: 130 LGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
++P KV+++G GK+ IL +F+ NE S TIG + + IN +
Sbjct: 14 LVPRGSHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RF 68
Query: 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIIL 138
+WD GQE R+ + YY +VV D T R+ + ++ AH D +++
Sbjct: 69 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 128
Query: 139 IGNKSDLVDMRAVS 152
NK D+ + V+
Sbjct: 129 FANKQDVKECMTVA 142
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
KV+++G GK+ IL +F+ NE S TIG + + IN + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RFLMWDIGGQES 77
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDM 148
R+ + YY +VV D T R+ + ++ AH D +++ NK D+ +
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 149 RAVS 152
V+
Sbjct: 138 MTVA 141
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA------RWVEELRAHADSSIRIILIGNK 142
R R + Y++ G + V D R+ VA V+ELR ++L NK
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV-----LLLFANK 127
Query: 143 SDLVDMRAVS 152
DL + A+S
Sbjct: 128 QDLPNAMAIS 137
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
++ ++G GK+ ++ +F D T+G F R +T IK +WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDL-- 145
R+R++ Y RG V + D ++ + + L I ++++GNK DL
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147
Query: 146 -VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
+D + + + + +D+ + S DN+D L+Q
Sbjct: 148 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
KV+++G GK+ IL +F+ NE S TIG + + IN + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RFLMWDIGGQES 72
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDM 148
R+ + YY +VV D T R+ + ++ AH D +++ NK D+ +
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 149 RAVS 152
V+
Sbjct: 133 MTVA 136
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---IIKAQIW 82
D +FKV+++G+S VGKS + F + + + R + ++ + ++ IW
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 83 ---DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRA---HADSSIRI 136
D G R + + ++V+ +T R+SF V + LRA H D + +
Sbjct: 81 EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPV 133
Query: 137 ILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
IL+GNKSDL R VS E+ A E SA N F
Sbjct: 134 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
KV+++G GK+ IL +F+ NE S TIG + + IN + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RFLMWDIGGQES 72
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDM 148
R+ + YY +VV D T R+ + ++ AH D +++ NK D+ +
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 149 RAVS 152
V+
Sbjct: 133 MTVA 136
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 18 ENMIPDKIDYVF-----KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI 72
+N P + +F +++++G A GK+ IL + E + TIG +T +
Sbjct: 150 QNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----V 204
Query: 73 NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS 132
K I +WD GQ++ R + Y++ G + V D R+ + E +R A+
Sbjct: 205 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAED 262
Query: 133 SIR---IILIGNKSDLVDMRAVSAEDAVEFAEDQGL 165
+R +++ NK DL + A +A E + GL
Sbjct: 263 ELRDAVLLVFANKQDLPN-----AMNAAEITDKLGL 293
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---IIKAQIW 82
D VFKV+++G+S VGKS + F + + + R + ++ + +I IW
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 83 ---DTAG--QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRA---HADSSI 134
D G Q+ A+ ++V+ +T R+SF V + LRA H D +
Sbjct: 70 EQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--L 120
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFA 160
+IL+GNKSDL R VS E+ A
Sbjct: 121 PVILVGNKSDLARSREVSLEEGRHLA 146
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---IIKAQIW-- 82
VFKV+++G+S VGKS + F + + + R + ++ + +I IW
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 83 -DTAG--QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRA---HADSSIRI 136
D G Q+ A+ ++V+ +T R+SF V + LRA H D + +
Sbjct: 62 GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPV 112
Query: 137 ILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
IL+GNKSDL R VS E+ A E SA N F
Sbjct: 113 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSDL 145
+ R + Y++ G + V D R+ + E +R A+ +R +++ NK DL
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 113
Query: 146 VDMRAVSAEDAVEFAEDQGL 165
+ A +A E + GL
Sbjct: 114 PN-----AMNAAEITDKLGL 128
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSDL 145
+ R + Y++ G + V D R+ + E +R A+ +R +++ NK DL
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 130
Query: 146 VDMRAVSAEDAVEFAEDQGL 165
+ A +A E + GL
Sbjct: 131 PN-----AMNAAEITDKLGL 145
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSDL 145
+ R + Y++ G + V D R+ + E +R A+ +R +++ NK DL
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 129
Query: 146 VDMRAVSAEDAVEFAEDQGL 165
+ A +A E + GL
Sbjct: 130 PN-----AMNAAEITDKLGL 144
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY 90
+ ++G GKS + +F F + + + + T++ + + ++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA---DSSIRIILIGNKSDLVD 147
R Y A +VVY + RQSFD + ++E L HA SI +L+GNK D+
Sbjct: 83 RNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQE 188
R V+ + V A G F E SA L+ ++V F ++E
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 30 KVVVIGDSAVGKSQILSRF--TKNEFFFDSKSTIGVEFQTRTVTINGKIIK---AQIWDT 84
K+ ++G++ GK+ +L + TK +T+G++ + + I K + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNKS 143
AG+E + + + + VYD++K Q+ D W+ ++A A SS +IL+G
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSP-VILVGTHL 122
Query: 144 DLVDMRAVSA 153
D+ D + A
Sbjct: 123 DVSDEKQRKA 132
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 30 KVVVIGDSAVGKSQILSRF--TKNEFFFDSKSTIGVEFQTRTVTINGKIIK---AQIWDT 84
K+ ++G++ GK+ +L + TK +T+G++ + + I K + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNKS 143
AG+E + + + + VYD++K Q+ D W+ ++A A SS +IL+G
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 144 DLVDMRAVSA 153
D+ D + A
Sbjct: 121 DVSDEKQRKA 130
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 41 KSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG 100
KS ++ RF K F TI ++ + ++ + + QI DT G ++ A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 101 ALGAVVVYDITKRQSFDHVA---RWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV 157
++V+ +T +QS + + + + +++ + I ++L+GNK D R V +A
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCDETQ-REVDTREAQ 137
Query: 158 EFAEDQGLFFSEASALNGDNVDTAFFRLL 186
A++ F E SA NV F LL
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELL 166
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 15/140 (10%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSDL 145
+ R + Y++ G + V D R+ + E +R A+ +R +++ NK DL
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 115
Query: 146 VDMRAVSAEDAVEFAEDQGL 165
+ A +A E + GL
Sbjct: 116 PN-----AMNAAEITDKLGL 130
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
+++++G A GK+ IL + E + TIG +T + + I +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVV-TTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVDM 148
R + YY G + V D R+ D + + + IIL+ NK DL +
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPN- 132
Query: 149 RAVSAEDAVE-----FAEDQGLFFSEASALNGDNVDTAF 182
A+SA + E ++ F A GD + F
Sbjct: 133 -AMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGF 170
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIR---IILIGNKSD 144
+ R + YY+ + V D R D + EEL + + +R +++ NK D
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 145 L---VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178
L + + V+ + ++ +++ + + A NGD +
Sbjct: 130 LPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGL 166
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G GK+ +L + E + TIG +T + K I +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS--SIRIILIGNKSDLV 146
R R++ YYR G + V D R AR V + + D + ++ NK DL
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGE-AREVMQRMLNEDELRNAAWLVFANKQDLP 114
Query: 147 DMRAVSAEDAVEFAEDQGL 165
+ A A E E GL
Sbjct: 115 E-----AMSAAEITEKLGL 128
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G GK+ +L + E + TIG +T + K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS--SIRIILIGNKSDLV 146
R R++ YYR G + V D R AR V + + D + ++ NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGE-AREVMQRMLNEDELRNAAWLVFANKQDLP 131
Query: 147 DMRAVSAEDAVEFAEDQGL 165
+ A A E E GL
Sbjct: 132 E-----AMSAAEITEKLGL 145
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G GK+ +L + E + TIG +T + K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSDL 145
R R++ YYR G + V D R AR V + R + +R ++ NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGE-AREVMQ-RMLNEDELRNAVWLVFANKQDL 130
Query: 146 VDMRAVSAEDAVEFAEDQGL 165
+ A A E E GL
Sbjct: 131 PE-----AMSAAEITEKLGL 145
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 9/153 (5%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
KV+++G GK+ IL +F NE S TIG + V K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVV----KNTHFLMWDIGGQES 72
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDL--- 145
R+ + YY ++V D R+ + + AH D +LI NK D+
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGC 132
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178
+ +S + +D AL G+ +
Sbjct: 133 MTAAEISKYLTLSSIKDHPWHIQSCCALTGEGL 165
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIR---IILIGNKSD 144
+ R + Y++ G + V D R D V +EL R + +R +++ NK D
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 132
Query: 145 LVDMRAVSAEDAVEFAEDQGL 165
L + A +A E + GL
Sbjct: 133 LPN-----AMNAAEITDKLGL 148
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 11/176 (6%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+++++G GK+ IL +F + D+ S T+G F +T+ G K IWD GQ
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDI--DTISPTLG--FNIKTLEHRG--FKLNIWDVGGQ 70
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDL- 145
+ R+ Y+ G + V D RQ R ++ L + +++ NK DL
Sbjct: 71 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 130
Query: 146 --VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 199
+ A+ ++ SA+ G+N+ LL +I + +LE
Sbjct: 131 GALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRIFTADLE 186
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G A GK+ IL + E + TIG +T + K I +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVD 147
+ R + Y++ G + V D R+ A ++++ + ++L+ NK D+ +
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 148 MRAVS 152
VS
Sbjct: 145 AMPVS 149
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+++++G GK+ IL +F + D+ S T+G F +T+ G K IWD GQ
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDV--DTISPTLG--FNIKTLEHRG--FKLNIWDVGGQ 72
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLV 146
+ R+ Y+ G + V D RQ R ++ L + +++ NK DL
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
Query: 147 DMRAVSA-EDAVEF 159
+ +A ++A+E
Sbjct: 133 GALSCNAIQEALEL 146
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
+++++G GK+ IL +F + D+ S T+G F +T+ G K IWD GQ
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDV--DTISPTLG--FNIKTLEHRG--FKLNIWDVGGQ 72
Query: 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLV 146
+ R+ Y+ G + V D RQ R ++ L + +++ NK DL
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
Query: 147 DMRAVSA-EDAVEF 159
+ +A ++A+E
Sbjct: 133 GALSXNAIQEALEL 146
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 19/159 (11%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G GK+ IL R E +K TIG +T ++ K +K +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQT 73
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFD------HVARWVEELRAHADSSIRIILIGNK 142
R YY + V D T + H+ EEL+ A +++ NK
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-----LLVFANK 128
Query: 143 SD---LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178
D + VS E + +D+ +SA+ G+ +
Sbjct: 129 QDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGI 167
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 19/162 (11%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D +++++G GK+ +L + + S T F ++V G K +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWDIG 69
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSD 144
GQ + R +Y+ + V D R+ F+ + E L S + +++ NK D
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 129
Query: 145 LVDMRAVSAEDAVEFAEDQGLF--------FSEASALNGDNV 178
L ++A A E AE L SAL G+ V
Sbjct: 130 L-----LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 166
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G GK+ IL R E + TIG F TVT K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGQT 57
Query: 89 RYRAVTSAYYRGALGAVVVYDITKR 113
R YY + V D R
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDR 82
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 19/162 (11%)
Query: 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
D +++++G GK+ +L + + S T F ++V G K +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWDIG 68
Query: 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSD 144
GQ + R +Y+ + V D R+ F+ + E L S + +++ NK D
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 145 LVDMRAVSAEDAVEFAEDQGLF--------FSEASALNGDNV 178
L ++A A E AE L SAL G+ V
Sbjct: 129 L-----LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 13/139 (9%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G GK+ +L + E + TIG F V I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIG--FNVECVQYCN--ISFTVWDVGGQD 72
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLV 146
R R++ YY G + V D R AR V + + D + ++ NK DL
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGE-AREVMQRMLNEDELCNAAWLVFANKQDLP 131
Query: 147 DMRAVSAEDAVEFAEDQGL 165
+ A A E E GL
Sbjct: 132 E-----AMSAAEITEKLGL 145
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 19/158 (12%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
+++++G GK+ +L + + S T F ++V G K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDLVDM 148
R +Y+ + V D R+ F+ + E L S + +++ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--- 117
Query: 149 RAVSAEDAVEFAEDQGLF--------FSEASALNGDNV 178
++A A E AE L SAL G+ V
Sbjct: 118 --LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 153
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 40 GKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYY 98
GK+ IL +F + D+ S T+G F +T+ G K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKFNGEDV--DTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYF 83
Query: 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSA-EDA 156
G + V D RQ R ++ L + +++ NK DL + +A ++A
Sbjct: 84 ESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEA 143
Query: 157 VEF 159
+E
Sbjct: 144 LEL 146
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 17/169 (10%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
+++++G GK+ IL R E + TIG F TVT K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGLT 59
Query: 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA-DSSIR---IILIGNKSD 144
R YY + V D R D + EL A + +R +++ NK D
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 116
Query: 145 LVDMRAVSAEDA----VEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
+ + S+E A + +D+ + SA G +D A L++ +
Sbjct: 117 M-EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 164
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD---SSIRII 137
++D +GQ RYR + YY+ + V D + R ++ L H D I I+
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130
Query: 138 LIGNKSDLVDMRA---VSAEDAVEFAEDQGLFFSEASALNGDNV 178
NK DL D VS +E +D+ + A+ G+ +
Sbjct: 131 FFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL 174
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 19/158 (12%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
+++++G GK+ +L + + S T F ++V G K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDLVDM 148
R +Y+ + V D R+ F+ + E L S + +++ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--- 117
Query: 149 RAVSAEDAVEFAEDQGLF--------FSEASALNGDNV 178
++A A E AE L SAL G+ V
Sbjct: 118 --LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 153
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
+++++G GK+ IL R E + TIG F TVT K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63
Query: 90 YRAVTSAYYRGALGAVVVYDITKR 113
R YY + V D R
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDR 87
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 19/155 (12%)
Query: 15 QQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING 74
+Q ++P D +V+++G GK+ IL R T T+
Sbjct: 11 KQTLGLLP--ADRKIRVLMLGLDNAGKTSILYRL-----HLGDVVTTVPTVGVNLETLQY 63
Query: 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-S 133
K I ++WD GQ R Y+ + V D T R VA+ EL A D
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMG-VAK--HELYALLDEDE 120
Query: 134 IR---IILIGNKSDLVDMRAVSAEDAVEFAEDQGL 165
+R +++ NK DL D A E AE G+
Sbjct: 121 LRKSLLLIFANKQDLPD-----AASEAEIAEQLGV 150
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 15/177 (8%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
++ V+GD+ GKS ++ RF + K+ E + + ++G+ I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 89 RYRAVTSAYYRGALGAVV-VYDITKRQSFDHVARW---VEELRAHADSSIRIILIGNKSD 144
A + G AV+ V+ + SF V+R + LR + + L+G +
Sbjct: 64 ----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119
Query: 145 L--VDMRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
+ R V A D + + E A G NVD F + Q++ +++L
Sbjct: 120 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 176
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 23/181 (12%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
++ V+GD+ GKS ++ RF + K+ E + + ++G+ I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 89 RYRAVTSAYYRGALGAVV-VYDITKRQSFDHVARW---VEELRAHADSSIRIILIGNKSD 144
A + G AV+ V+ + SF V+R + LR + + L+G +
Sbjct: 64 ----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ-- 117
Query: 145 LVDMRAVSAEDAVEFAEDQGLF-------FSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
D + S+ V A + L + E A G NVD F + Q++ +++
Sbjct: 118 --DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQ 175
Query: 198 L 198
L
Sbjct: 176 L 176
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 21 IPDKIDYV--FKVVVIGDSAVGKSQILSRFTKNEF 53
I + +DY+ F ++ G S VGKS ILSR T E
Sbjct: 156 IDELVDYLEGFICILAGPSGVGKSSILSRLTGEEL 190
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSK---STIGVEFQTRTVTINGKIIKAQIWDTAG 86
K++++G S GKS + S N FD++ +TI VE N + +WD G
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCGG 64
Query: 87 Q----ERYRAVTSAYYRGALGAVV-VYDITKRQSFDHV---ARWVEELRAHADSSIRIIL 138
Q E Y + + ++ V+D+ + + A+ +++LR ++ + +I +
Sbjct: 65 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA-KIFV 123
Query: 139 IGNKSDLVDM 148
+ +K DLV +
Sbjct: 124 LLHKMDLVQL 133
>pdb|4DXD|A Chain A, Staphylococcal Aureus Ftsz In Complex With 723
Length = 396
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 30/129 (23%)
Query: 102 LGAVVVYDITKRQSFD------HVARWVEELRAHADSSI-----RIILIGNKSD------ 144
+GA+ V +T+ SF+ A VE ++A D+ I R++ I +KS
Sbjct: 130 MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAF 189
Query: 145 -------------LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
+ D+ AVS E ++FA+ + + ++ SAL G V + R ++
Sbjct: 190 KEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKK 249
Query: 192 AVSKKELEC 200
A+S LE
Sbjct: 250 AISSPLLET 258
>pdb|3VO8|A Chain A, Staphylococcus Aureus Ftsz Gdp-Form
pdb|3VO8|B Chain B, Staphylococcus Aureus Ftsz Gdp-Form
Length = 392
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 30/129 (23%)
Query: 102 LGAVVVYDITKRQSFD------HVARWVEELRAHADSSI-----RIILIGNKSD------ 144
+GA+ V +T+ SF+ A VE ++A D+ I R++ I +KS
Sbjct: 126 MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAF 185
Query: 145 -------------LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
+ D+ AVS E ++FA+ + + ++ SAL G V + R ++
Sbjct: 186 KEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKK 245
Query: 192 AVSKKELEC 200
A+S LE
Sbjct: 246 AISSPLLET 254
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA 156
Y + L V D+ + ++F V EL+ +R+ +IG S + + +S +
Sbjct: 141 YDKRKLFGVTTLDVIRSETF------VAELKGQDPGEVRVPVIGGHSGVTILPLLSQVEG 194
Query: 157 VEFAEDQ 163
VEF++++
Sbjct: 195 VEFSDEE 201
>pdb|3VOA|A Chain A, Staphylococcus Aureus Ftsz 12-316 Gdp-Form
pdb|3VOB|A Chain A, Staphylococcus Aureus Ftsz With Pc190723
pdb|3VPA|A Chain A, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|B Chain B, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|C Chain C, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|D Chain D, Staphylococcus Aureus Ftsz Apo-Form
Length = 308
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 30/129 (23%)
Query: 102 LGAVVVYDITKRQSFD------HVARWVEELRAHADSSI-----RIILIGNKSD------ 144
+GA+ V +T+ SF+ A VE ++A D+ I R++ I +KS
Sbjct: 116 MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAF 175
Query: 145 -------------LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
+ D+ AVS E ++FA+ + + ++ SAL G V + R ++
Sbjct: 176 KEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKK 235
Query: 192 AVSKKELEC 200
A+S LE
Sbjct: 236 AISSPLLET 244
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF----------FRLLQEIYGAVSKKE 197
+R + E+AV A ++ + + AL D DT F FRL+Q G V+ E
Sbjct: 116 VRRIGREEAVRIAVEE--YIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLFSGKVTAAE 173
Query: 198 LECGNGKVDGPPMLA 212
+E G++ M+A
Sbjct: 174 MEAIYGELTPAKMMA 188
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 12/160 (7%)
Query: 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTV-TING-------KIIKAQ 80
KV +IGD GK+ +L + F T G+ T+ I G K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG 140
WD GQE A + + +++ D ++ S H W+ + + S +I++
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDSNKHY--WLRHIEKYGGKS-PVIVVM 157
Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180
NK D + + E F S NGD V++
Sbjct: 158 NKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVES 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,622,947
Number of Sequences: 62578
Number of extensions: 256036
Number of successful extensions: 1335
Number of sequences better than 100.0: 351
Number of HSP's better than 100.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 367
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)