Query 026548
Match_columns 237
No_of_seqs 156 out of 1851
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 8.8E-41 1.9E-45 248.9 21.8 176 22-197 3-179 (205)
2 KOG0080 GTPase Rab18, small G 100.0 1.8E-39 4E-44 233.5 18.4 203 23-237 6-209 (209)
3 KOG0078 GTP-binding protein SE 100.0 2.1E-38 4.4E-43 239.5 22.3 179 20-198 4-182 (207)
4 KOG0092 GTPase Rab5/YPT51 and 100.0 9.1E-39 2E-43 237.2 19.4 172 26-197 3-174 (200)
5 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.1E-38 4.5E-43 238.5 20.6 217 20-236 6-222 (222)
6 KOG0098 GTPase Rab2, small G p 100.0 1.9E-37 4.1E-42 228.5 20.4 173 24-196 2-174 (216)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 3.1E-37 6.6E-42 229.2 19.7 171 24-194 18-189 (221)
8 KOG0394 Ras-related GTPase [Ge 100.0 7.1E-37 1.5E-41 225.1 17.0 173 23-195 4-183 (210)
9 cd04120 Rab12 Rab12 subfamily. 100.0 2.1E-35 4.5E-40 230.6 25.0 167 29-195 1-168 (202)
10 PLN03110 Rab GTPase; Provision 100.0 5.5E-35 1.2E-39 231.3 26.5 173 25-197 9-181 (216)
11 cd04121 Rab40 Rab40 subfamily. 100.0 6.5E-35 1.4E-39 225.8 23.9 169 25-194 3-171 (189)
12 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.1E-34 2.4E-39 227.2 23.7 171 29-199 1-177 (201)
13 KOG0093 GTPase Rab3, small G p 100.0 1.8E-35 3.9E-40 209.9 16.3 180 17-196 10-189 (193)
14 cd04125 RabA_like RabA-like su 100.0 1.1E-33 2.3E-38 219.4 24.2 169 29-197 1-169 (188)
15 cd04109 Rab28 Rab28 subfamily. 100.0 6.6E-34 1.4E-38 225.1 23.4 164 29-192 1-168 (215)
16 KOG0079 GTP-binding protein H- 100.0 2.9E-35 6.2E-40 209.1 13.5 170 23-193 3-172 (198)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.1E-33 4.6E-38 223.0 25.4 171 24-196 9-194 (232)
18 PLN03108 Rab family protein; P 100.0 3.3E-33 7.1E-38 220.2 26.2 170 25-194 3-172 (210)
19 cd04122 Rab14 Rab14 subfamily. 100.0 1.7E-33 3.8E-38 213.9 23.0 164 28-191 2-165 (166)
20 KOG0086 GTPase Rab4, small G p 100.0 2.2E-34 4.7E-39 205.8 16.4 181 20-200 1-181 (214)
21 cd01867 Rab8_Rab10_Rab13_like 100.0 2.8E-33 6E-38 213.0 22.8 166 26-191 1-166 (167)
22 KOG0095 GTPase Rab30, small G 100.0 2.7E-34 6E-39 204.5 15.7 208 24-236 3-210 (213)
23 cd04111 Rab39 Rab39 subfamily. 100.0 7.2E-33 1.6E-37 218.3 25.1 170 28-197 2-173 (211)
24 KOG0088 GTPase Rab21, small G 100.0 9E-35 2E-39 208.9 12.7 208 25-236 10-217 (218)
25 KOG0091 GTPase Rab39, small G 100.0 5.1E-34 1.1E-38 206.0 16.4 179 24-202 4-185 (213)
26 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-32 2.9E-37 215.1 25.0 168 26-194 4-171 (199)
27 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 5.2E-33 1.1E-37 214.1 21.7 162 27-190 4-180 (182)
28 cd04126 Rab20 Rab20 subfamily. 100.0 6.3E-33 1.4E-37 219.0 22.7 165 29-198 1-198 (220)
29 cd04144 Ras2 Ras2 subfamily. 100.0 6.7E-33 1.4E-37 215.3 22.1 165 30-195 1-168 (190)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 7.5E-33 1.6E-37 211.7 21.9 164 28-192 2-166 (172)
31 cd04112 Rab26 Rab26 subfamily. 100.0 1.4E-32 2.9E-37 213.7 23.1 165 29-193 1-166 (191)
32 cd04127 Rab27A Rab27a subfamil 100.0 1.3E-32 2.8E-37 211.7 22.6 167 26-192 2-179 (180)
33 cd01865 Rab3 Rab3 subfamily. 100.0 1.9E-32 4E-37 208.1 22.9 163 29-191 2-164 (165)
34 cd04133 Rop_like Rop subfamily 100.0 8.7E-33 1.9E-37 211.6 21.2 159 29-189 2-172 (176)
35 PTZ00369 Ras-like protein; Pro 100.0 1.3E-32 2.9E-37 213.4 22.5 166 28-194 5-171 (189)
36 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2E-32 4.2E-37 208.0 22.9 164 28-191 2-165 (166)
37 cd04117 Rab15 Rab15 subfamily. 100.0 1.6E-32 3.5E-37 207.6 21.9 160 29-188 1-160 (161)
38 PF00071 Ras: Ras family; Int 100.0 2.1E-32 4.6E-37 206.9 22.0 161 30-190 1-161 (162)
39 cd04119 RJL RJL (RabJ-Like) su 100.0 2.7E-32 5.9E-37 207.0 22.2 162 29-190 1-167 (168)
40 KOG0097 GTPase Rab14, small G 100.0 1.4E-32 3E-37 194.3 18.8 190 21-210 4-193 (215)
41 cd04131 Rnd Rnd subfamily. Th 100.0 1.8E-32 3.9E-37 210.6 21.1 160 29-190 2-176 (178)
42 cd01866 Rab2 Rab2 subfamily. 100.0 5.4E-32 1.2E-36 206.2 23.4 166 26-191 2-167 (168)
43 cd01868 Rab11_like Rab11-like. 100.0 4.2E-32 9.1E-37 205.9 22.4 163 27-189 2-164 (165)
44 cd01875 RhoG RhoG subfamily. 100.0 3.6E-32 7.9E-37 211.3 22.3 163 28-192 3-179 (191)
45 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.1E-31 2.5E-36 212.0 24.1 165 29-195 2-181 (222)
46 cd04128 Spg1 Spg1p. Spg1p (se 100.0 6.8E-32 1.5E-36 208.1 21.7 162 29-191 1-167 (182)
47 cd01864 Rab19 Rab19 subfamily. 100.0 1.1E-31 2.4E-36 203.7 22.1 162 27-188 2-164 (165)
48 cd04136 Rap_like Rap-like subf 100.0 8.2E-32 1.8E-36 203.7 20.9 160 29-189 2-162 (163)
49 smart00175 RAB Rab subfamily o 100.0 1.9E-31 4.2E-36 201.8 22.5 164 29-192 1-164 (164)
50 cd04113 Rab4 Rab4 subfamily. 100.0 1.8E-31 3.9E-36 201.7 21.5 160 29-188 1-160 (161)
51 cd04118 Rab24 Rab24 subfamily. 100.0 4.2E-31 9.1E-36 205.6 24.1 165 29-194 1-170 (193)
52 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.6E-31 3.5E-36 204.9 20.9 160 28-189 1-174 (175)
53 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 4E-31 8.8E-36 201.7 22.6 162 30-191 2-166 (170)
54 KOG0081 GTPase Rab27, small G 100.0 1.4E-33 3E-38 202.9 8.3 174 22-195 3-186 (219)
55 cd04175 Rap1 Rap1 subgroup. T 100.0 2.9E-31 6.2E-36 201.2 21.2 161 29-190 2-163 (164)
56 cd04132 Rho4_like Rho4-like su 100.0 3.6E-31 7.7E-36 205.0 21.9 166 29-196 1-173 (187)
57 cd04106 Rab23_lke Rab23-like s 100.0 2.9E-31 6.4E-36 200.6 21.0 159 29-188 1-161 (162)
58 PLN03071 GTP-binding nuclear p 100.0 3.6E-31 7.8E-36 209.7 22.3 164 26-192 11-174 (219)
59 PLN03118 Rab family protein; P 100.0 1.6E-30 3.5E-35 205.2 25.3 167 25-192 11-179 (211)
60 cd04116 Rab9 Rab9 subfamily. 100.0 8E-31 1.7E-35 199.9 22.3 162 26-188 3-169 (170)
61 cd04176 Rap2 Rap2 subgroup. T 100.0 5.4E-31 1.2E-35 199.4 21.1 160 29-189 2-162 (163)
62 cd00877 Ran Ran (Ras-related n 100.0 7.5E-31 1.6E-35 199.5 21.7 160 29-191 1-160 (166)
63 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1E-30 2.2E-35 199.5 21.8 162 28-189 2-168 (170)
64 smart00173 RAS Ras subfamily o 100.0 8.4E-31 1.8E-35 198.5 21.2 161 29-190 1-162 (164)
65 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.1E-30 2.3E-35 197.8 21.7 161 28-189 2-163 (164)
66 cd01861 Rab6 Rab6 subfamily. 100.0 1.2E-30 2.7E-35 196.9 21.7 160 29-188 1-160 (161)
67 cd04124 RabL2 RabL2 subfamily. 100.0 1.6E-30 3.4E-35 196.7 21.8 160 29-192 1-160 (161)
68 cd01860 Rab5_related Rab5-rela 100.0 2.7E-30 5.9E-35 195.5 22.6 161 29-189 2-162 (163)
69 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2E-30 4.4E-35 195.6 21.6 159 29-189 2-161 (162)
70 cd01871 Rac1_like Rac1-like su 100.0 1.3E-30 2.8E-35 199.7 20.8 158 29-188 2-173 (174)
71 cd04140 ARHI_like ARHI subfami 100.0 2.3E-30 4.9E-35 196.6 21.2 158 29-187 2-162 (165)
72 cd04134 Rho3 Rho3 subfamily. 100.0 2.5E-30 5.4E-35 200.7 21.1 161 30-192 2-176 (189)
73 cd04142 RRP22 RRP22 subfamily. 100.0 2.9E-30 6.4E-35 201.4 21.1 165 29-193 1-177 (198)
74 cd01862 Rab7 Rab7 subfamily. 100.0 1.3E-29 2.9E-34 193.2 22.7 165 29-193 1-170 (172)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 7.8E-30 1.7E-34 193.2 21.2 160 29-189 1-163 (164)
76 smart00176 RAN Ran (Ras-relate 100.0 6.9E-30 1.5E-34 199.2 21.2 156 34-192 1-156 (200)
77 cd04123 Rab21 Rab21 subfamily. 100.0 1.7E-29 3.7E-34 190.5 22.5 161 29-189 1-161 (162)
78 smart00174 RHO Rho (Ras homolo 100.0 8.1E-30 1.8E-34 195.0 20.0 159 31-191 1-173 (174)
79 cd01863 Rab18 Rab18 subfamily. 100.0 1.9E-29 4.1E-34 190.5 21.8 159 29-188 1-160 (161)
80 cd04177 RSR1 RSR1 subgroup. R 100.0 2.3E-29 4.9E-34 191.7 21.6 162 29-191 2-165 (168)
81 cd01873 RhoBTB RhoBTB subfamil 100.0 1.1E-29 2.4E-34 197.6 20.0 158 28-188 2-194 (195)
82 cd04146 RERG_RasL11_like RERG/ 100.0 1.1E-29 2.4E-34 192.7 19.6 160 30-190 1-164 (165)
83 cd01892 Miro2 Miro2 subfamily. 100.0 1.2E-29 2.5E-34 193.5 19.1 163 26-190 2-166 (169)
84 cd04143 Rhes_like Rhes_like su 100.0 2.8E-29 6E-34 201.8 21.6 160 29-189 1-170 (247)
85 cd04114 Rab30 Rab30 subfamily. 100.0 7.6E-29 1.6E-33 188.7 22.7 164 26-189 5-168 (169)
86 cd04103 Centaurin_gamma Centau 100.0 2.8E-29 6.1E-34 189.2 19.8 153 29-188 1-157 (158)
87 cd00154 Rab Rab family. Rab G 100.0 4.8E-29 1E-33 186.9 21.0 158 29-186 1-158 (159)
88 cd04148 RGK RGK subfamily. Th 100.0 4.8E-29 1E-33 197.9 21.8 165 29-195 1-168 (221)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 6.8E-29 1.5E-33 189.9 20.7 157 29-187 1-171 (173)
90 KOG0083 GTPase Rab26/Rab37, sm 100.0 2.7E-31 5.9E-36 185.8 6.6 161 32-192 1-162 (192)
91 cd04135 Tc10 TC10 subfamily. 100.0 6.3E-29 1.4E-33 190.1 20.3 159 29-189 1-173 (174)
92 cd04139 RalA_RalB RalA/RalB su 100.0 2E-28 4.4E-33 185.1 21.7 162 29-191 1-163 (164)
93 cd00876 Ras Ras family. The R 100.0 3.5E-28 7.6E-33 183.0 20.3 158 30-188 1-159 (160)
94 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 6.8E-28 1.5E-32 186.1 19.7 167 28-197 3-177 (183)
95 cd04137 RheB Rheb (Ras Homolog 100.0 1.7E-27 3.8E-32 183.2 21.5 164 29-193 2-166 (180)
96 cd01870 RhoA_like RhoA-like su 100.0 2.4E-27 5.1E-32 181.5 21.0 159 29-189 2-174 (175)
97 KOG0395 Ras-related GTPase [Ge 100.0 1.1E-27 2.4E-32 185.6 19.2 166 28-194 3-169 (196)
98 cd04147 Ras_dva Ras-dva subfam 100.0 2E-27 4.4E-32 185.7 20.9 160 30-190 1-163 (198)
99 cd04129 Rho2 Rho2 subfamily. 100.0 2.5E-27 5.4E-32 183.5 21.0 164 29-194 2-177 (187)
100 cd04149 Arf6 Arf6 subfamily. 100.0 7E-28 1.5E-32 183.5 17.1 153 28-187 9-167 (168)
101 cd04158 ARD1 ARD1 subfamily. 100.0 1.8E-27 3.9E-32 181.4 19.3 156 30-192 1-163 (169)
102 PTZ00132 GTP-binding nuclear p 100.0 6.6E-27 1.4E-31 185.1 22.7 167 23-192 4-170 (215)
103 PLN00223 ADP-ribosylation fact 100.0 2.6E-27 5.7E-32 182.4 19.5 159 27-192 16-180 (181)
104 cd00157 Rho Rho (Ras homology) 100.0 8.8E-27 1.9E-31 177.5 20.3 157 29-187 1-170 (171)
105 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5.3E-28 1.2E-32 183.5 13.5 152 31-187 2-163 (164)
106 KOG4252 GTP-binding protein [S 100.0 2.4E-29 5.3E-34 184.5 5.8 178 17-195 9-186 (246)
107 smart00177 ARF ARF-like small 100.0 5.4E-27 1.2E-31 179.8 18.8 155 28-189 13-173 (175)
108 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.9E-27 8.4E-32 177.8 17.7 152 29-187 1-158 (159)
109 PTZ00133 ADP-ribosylation fact 100.0 7.2E-27 1.6E-31 180.1 19.1 159 28-193 17-181 (182)
110 cd01893 Miro1 Miro1 subfamily. 100.0 1E-26 2.2E-31 176.7 18.9 160 29-191 1-165 (166)
111 cd04154 Arl2 Arl2 subfamily. 100.0 1.1E-26 2.5E-31 177.6 18.6 154 27-187 13-172 (173)
112 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.7E-26 3.7E-31 180.1 18.9 148 29-176 1-176 (202)
113 KOG0393 Ras-related small GTPa 99.9 2E-27 4.3E-32 180.6 11.7 166 27-194 3-183 (198)
114 cd04157 Arl6 Arl6 subfamily. 99.9 6.3E-26 1.4E-30 171.2 16.7 152 30-187 1-161 (162)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.1E-25 2.3E-30 172.5 17.7 153 28-187 15-173 (174)
116 cd04156 ARLTS1 ARLTS1 subfamil 99.9 7.9E-26 1.7E-30 170.5 15.9 152 30-187 1-159 (160)
117 cd04161 Arl2l1_Arl13_like Arl2 99.9 5.7E-26 1.2E-30 172.8 15.1 151 30-187 1-166 (167)
118 cd00879 Sar1 Sar1 subfamily. 99.9 2.2E-25 4.7E-30 173.0 18.4 155 27-188 18-189 (190)
119 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.8E-25 3.8E-30 169.8 17.2 152 30-187 1-166 (167)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.6E-25 3.5E-30 168.5 15.4 151 30-187 1-157 (158)
121 cd04151 Arl1 Arl1 subfamily. 99.9 3.1E-25 6.8E-30 167.1 16.7 151 30-187 1-157 (158)
122 PTZ00099 rab6; Provisional 99.9 1.1E-24 2.3E-29 166.8 19.8 141 51-191 3-143 (176)
123 PLN00023 GTP-binding protein; 99.9 5.7E-25 1.2E-29 179.8 19.0 144 22-165 15-189 (334)
124 PF00025 Arf: ADP-ribosylation 99.9 1.5E-24 3.3E-29 166.1 18.1 157 26-189 12-175 (175)
125 smart00178 SAR Sar1p-like memb 99.9 1.7E-24 3.7E-29 167.2 17.8 154 28-188 17-183 (184)
126 cd04159 Arl10_like Arl10-like 99.9 6.9E-24 1.5E-28 158.9 18.7 151 31-187 2-158 (159)
127 cd01897 NOG NOG1 is a nucleola 99.9 3.3E-24 7.2E-29 162.9 16.5 156 29-189 1-167 (168)
128 cd01890 LepA LepA subfamily. 99.9 3.7E-24 8.1E-29 164.3 16.7 154 30-189 2-176 (179)
129 cd01898 Obg Obg subfamily. Th 99.9 6.2E-24 1.3E-28 161.7 15.7 157 30-188 2-169 (170)
130 cd01878 HflX HflX subfamily. 99.9 7E-24 1.5E-28 166.4 15.4 158 25-189 38-204 (204)
131 TIGR00231 small_GTP small GTP- 99.9 4.4E-23 9.6E-28 154.0 19.0 157 28-185 1-159 (161)
132 KOG0073 GTP-binding ADP-ribosy 99.9 5.2E-23 1.1E-27 149.2 18.2 161 26-193 14-181 (185)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 3.3E-23 7.1E-28 172.9 19.0 163 28-191 158-329 (335)
134 cd04155 Arl3 Arl3 subfamily. 99.9 6.1E-23 1.3E-27 156.7 18.8 150 28-187 14-172 (173)
135 cd04171 SelB SelB subfamily. 99.9 3.7E-23 7.9E-28 156.2 16.4 151 30-187 2-163 (164)
136 COG1100 GTPase SAR1 and relate 99.9 2.1E-22 4.7E-27 159.5 20.1 170 29-198 6-193 (219)
137 TIGR02528 EutP ethanolamine ut 99.9 3.6E-23 7.7E-28 153.1 12.4 134 30-186 2-141 (142)
138 PF02421 FeoB_N: Ferrous iron 99.9 4.7E-23 1E-27 152.9 12.9 148 29-185 1-156 (156)
139 cd00882 Ras_like_GTPase Ras-li 99.9 4.9E-22 1.1E-26 147.0 17.8 153 33-186 1-156 (157)
140 cd01879 FeoB Ferrous iron tran 99.9 2.7E-22 5.8E-27 150.7 16.6 147 33-188 1-155 (158)
141 PRK04213 GTP-binding protein; 99.9 3.7E-23 8E-28 161.9 11.8 154 24-190 5-192 (201)
142 TIGR03156 GTP_HflX GTP-binding 99.9 2.9E-22 6.3E-27 168.5 17.4 155 26-188 187-350 (351)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.5E-22 7.5E-27 151.6 15.8 156 30-189 2-165 (168)
144 TIGR02729 Obg_CgtA Obg family 99.9 7.4E-22 1.6E-26 164.7 18.0 160 28-189 157-328 (329)
145 cd01891 TypA_BipA TypA (tyrosi 99.9 3.1E-22 6.7E-27 155.9 13.3 149 29-181 3-173 (194)
146 PRK03003 GTP-binding protein D 99.9 5.8E-22 1.3E-26 173.5 16.2 186 27-218 210-416 (472)
147 TIGR00436 era GTP-binding prot 99.9 1E-21 2.2E-26 160.5 16.4 152 30-189 2-163 (270)
148 cd01881 Obg_like The Obg-like 99.9 5.3E-22 1.1E-26 151.7 13.4 154 33-188 1-175 (176)
149 KOG0070 GTP-binding ADP-ribosy 99.9 1E-21 2.2E-26 145.9 13.9 158 27-191 16-179 (181)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.7E-21 5.9E-26 167.0 18.8 155 26-194 201-364 (442)
151 KOG3883 Ras family small GTPas 99.9 4.1E-21 8.9E-26 137.8 16.4 168 28-196 9-181 (198)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3E-21 6.6E-26 144.5 16.6 146 29-189 2-156 (157)
153 KOG0075 GTP-binding ADP-ribosy 99.9 3.7E-22 8.1E-27 142.1 10.3 153 28-189 20-181 (186)
154 KOG1673 Ras GTPases [General f 99.9 6.2E-22 1.3E-26 142.3 10.7 167 24-192 16-188 (205)
155 PRK15494 era GTPase Era; Provi 99.9 4.9E-21 1.1E-25 160.8 17.4 163 26-202 50-224 (339)
156 PF08477 Miro: Miro-like prote 99.9 2.1E-21 4.6E-26 139.2 12.8 114 30-144 1-119 (119)
157 PRK12297 obgE GTPase CgtA; Rev 99.9 1.5E-20 3.2E-25 160.9 20.0 159 29-192 159-329 (424)
158 cd01894 EngA1 EngA1 subfamily. 99.9 5.4E-21 1.2E-25 143.2 14.7 147 32-189 1-157 (157)
159 cd01889 SelB_euk SelB subfamil 99.9 3.2E-21 7E-26 149.9 13.6 158 29-190 1-186 (192)
160 PRK11058 GTPase HflX; Provisio 99.9 7.6E-21 1.7E-25 163.4 17.2 164 28-197 197-369 (426)
161 cd00881 GTP_translation_factor 99.9 5E-21 1.1E-25 147.8 14.4 154 30-189 1-186 (189)
162 PRK05291 trmE tRNA modificatio 99.9 6.2E-21 1.3E-25 165.6 16.5 149 27-191 214-371 (449)
163 TIGR01393 lepA GTP-binding pro 99.9 1.1E-20 2.5E-25 168.6 17.9 156 28-189 3-179 (595)
164 TIGR03594 GTPase_EngA ribosome 99.9 1.7E-20 3.6E-25 163.1 18.4 186 26-218 170-378 (429)
165 PRK03003 GTP-binding protein D 99.9 1.3E-20 2.7E-25 165.1 17.7 155 26-191 36-200 (472)
166 PRK15467 ethanolamine utilizat 99.9 1.2E-20 2.6E-25 142.2 14.2 142 30-193 3-150 (158)
167 PRK12296 obgE GTPase CgtA; Rev 99.9 3.3E-20 7.1E-25 160.7 18.1 163 28-193 159-343 (500)
168 PRK00454 engB GTP-binding prot 99.9 3.7E-20 8.1E-25 144.1 16.6 165 19-190 15-194 (196)
169 TIGR00487 IF-2 translation ini 99.9 4.1E-20 8.8E-25 164.3 18.5 155 25-187 84-247 (587)
170 cd04163 Era Era subfamily. Er 99.8 8E-20 1.7E-24 137.8 16.5 156 28-188 3-167 (168)
171 cd01895 EngA2 EngA2 subfamily. 99.8 1.2E-19 2.5E-24 138.0 17.5 155 28-188 2-173 (174)
172 PRK12298 obgE GTPase CgtA; Rev 99.8 8.4E-20 1.8E-24 155.3 18.2 162 28-191 159-334 (390)
173 TIGR03598 GTPase_YsxC ribosome 99.8 6.5E-20 1.4E-24 141.0 14.2 150 23-179 13-179 (179)
174 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.2E-20 2.7E-25 140.1 9.3 164 26-192 8-171 (216)
175 TIGR00475 selB selenocysteine- 99.8 1.1E-19 2.3E-24 162.2 17.1 154 29-191 1-167 (581)
176 PRK00089 era GTPase Era; Revie 99.8 1.3E-19 2.9E-24 149.7 16.1 157 28-189 5-170 (292)
177 COG1159 Era GTPase [General fu 99.8 8.3E-20 1.8E-24 145.9 14.1 166 28-202 6-180 (298)
178 CHL00189 infB translation init 99.8 1.4E-19 3E-24 163.3 17.2 158 25-189 241-409 (742)
179 cd01888 eIF2_gamma eIF2-gamma 99.8 8.1E-20 1.8E-24 143.2 13.8 155 29-189 1-198 (203)
180 PRK05306 infB translation init 99.8 2.7E-19 5.9E-24 162.8 18.6 154 25-187 287-449 (787)
181 TIGR00437 feoB ferrous iron tr 99.8 2E-19 4.4E-24 160.6 16.5 146 35-189 1-154 (591)
182 KOG0071 GTP-binding ADP-ribosy 99.8 3.4E-19 7.3E-24 126.1 14.1 155 28-189 17-177 (180)
183 PF00009 GTP_EFTU: Elongation 99.8 1.2E-19 2.5E-24 140.7 12.4 157 27-189 2-186 (188)
184 PRK00093 GTP-binding protein D 99.8 5.2E-19 1.1E-23 153.9 17.5 146 29-187 2-159 (435)
185 TIGR03594 GTPase_EngA ribosome 99.8 5.6E-19 1.2E-23 153.5 17.6 150 30-190 1-160 (429)
186 PRK00093 GTP-binding protein D 99.8 7.9E-19 1.7E-23 152.8 18.2 184 27-218 172-378 (435)
187 PRK09518 bifunctional cytidyla 99.8 6E-19 1.3E-23 161.4 17.9 184 27-218 449-655 (712)
188 PRK05433 GTP-binding protein L 99.8 5.8E-19 1.2E-23 157.8 17.3 158 27-190 6-184 (600)
189 cd00880 Era_like Era (E. coli 99.8 5.1E-19 1.1E-23 132.1 13.9 151 33-188 1-162 (163)
190 PRK09554 feoB ferrous iron tra 99.8 2.3E-18 4.9E-23 157.4 19.3 153 28-189 3-167 (772)
191 COG2229 Predicted GTPase [Gene 99.8 3.5E-18 7.6E-23 127.0 16.7 157 26-188 8-176 (187)
192 cd01896 DRG The developmentall 99.8 3.6E-18 7.8E-23 136.4 17.4 151 30-189 2-225 (233)
193 KOG4423 GTP-binding protein-li 99.8 1.8E-21 3.9E-26 144.0 -2.3 171 23-193 20-197 (229)
194 PRK09518 bifunctional cytidyla 99.8 3.8E-18 8.3E-23 156.1 18.8 154 27-191 274-437 (712)
195 COG1160 Predicted GTPases [Gen 99.8 1.8E-18 3.9E-23 145.5 14.8 148 29-189 4-164 (444)
196 COG1160 Predicted GTPases [Gen 99.8 3E-18 6.4E-23 144.2 15.9 185 27-218 177-385 (444)
197 COG0486 ThdF Predicted GTPase 99.8 4.4E-18 9.5E-23 143.5 16.5 158 23-192 212-378 (454)
198 TIGR00491 aIF-2 translation in 99.8 4.7E-18 1E-22 151.0 17.0 155 28-189 4-215 (590)
199 cd04105 SR_beta Signal recogni 99.8 4.9E-18 1.1E-22 133.0 14.7 117 30-147 2-123 (203)
200 KOG0076 GTP-binding ADP-ribosy 99.8 1.3E-18 2.9E-23 127.5 10.0 159 28-192 17-189 (197)
201 cd01876 YihA_EngB The YihA (En 99.8 8.2E-18 1.8E-22 127.1 14.7 150 30-188 1-169 (170)
202 TIGR00483 EF-1_alpha translati 99.8 5.3E-18 1.2E-22 147.0 14.3 154 26-182 5-199 (426)
203 COG2262 HflX GTPases [General 99.8 1.9E-17 4.2E-22 137.4 16.8 172 24-202 188-368 (411)
204 cd04166 CysN_ATPS CysN_ATPS su 99.8 5.7E-18 1.2E-22 133.2 12.8 146 30-180 1-184 (208)
205 PRK12317 elongation factor 1-a 99.8 6.3E-18 1.4E-22 146.5 14.0 153 26-182 4-197 (425)
206 PRK10218 GTP-binding protein; 99.8 2.3E-17 5E-22 147.1 17.4 159 27-189 4-194 (607)
207 KOG1423 Ras-like GTPase ERA [C 99.8 3.2E-17 7E-22 130.8 16.1 182 14-203 58-280 (379)
208 PRK04004 translation initiatio 99.8 3E-17 6.5E-22 146.4 17.6 156 27-189 5-217 (586)
209 TIGR01394 TypA_BipA GTP-bindin 99.8 1.4E-17 3E-22 148.6 14.4 158 29-190 2-191 (594)
210 cd04168 TetM_like Tet(M)-like 99.8 5.4E-17 1.2E-21 129.9 15.9 112 30-147 1-130 (237)
211 PRK10512 selenocysteinyl-tRNA- 99.8 4.1E-17 8.9E-22 146.2 16.8 152 30-189 2-165 (614)
212 PF10662 PduV-EutP: Ethanolami 99.7 3E-17 6.5E-22 119.3 12.4 135 30-186 3-142 (143)
213 cd01884 EF_Tu EF-Tu subfamily. 99.7 7.4E-17 1.6E-21 125.3 15.3 146 28-179 2-172 (195)
214 TIGR03680 eif2g_arch translati 99.7 2.3E-17 5E-22 142.0 13.5 161 27-189 3-195 (406)
215 PRK04000 translation initiatio 99.7 3.4E-17 7.4E-22 140.9 14.3 163 24-189 5-200 (411)
216 COG0218 Predicted GTPase [Gene 99.7 1.4E-16 3E-21 121.0 15.6 161 23-191 19-198 (200)
217 KOG0074 GTP-binding ADP-ribosy 99.7 2.6E-17 5.6E-22 116.8 10.7 153 26-187 15-176 (185)
218 KOG1707 Predicted Ras related/ 99.7 1.1E-17 2.4E-22 143.4 10.4 164 26-191 7-176 (625)
219 COG1084 Predicted GTPase [Gene 99.7 2.6E-16 5.6E-21 127.1 16.3 165 21-191 161-337 (346)
220 KOG0072 GTP-binding ADP-ribosy 99.7 9.9E-18 2.1E-22 119.3 6.5 158 27-191 17-180 (182)
221 cd01883 EF1_alpha Eukaryotic e 99.7 6E-17 1.3E-21 128.4 11.8 146 30-179 1-194 (219)
222 cd04167 Snu114p Snu114p subfam 99.7 8E-17 1.7E-21 127.2 12.5 113 30-146 2-136 (213)
223 KOG1489 Predicted GTP-binding 99.7 1.4E-16 2.9E-21 127.9 13.6 157 27-187 195-364 (366)
224 COG0370 FeoB Fe2+ transport sy 99.7 3.1E-16 6.8E-21 137.7 16.0 153 28-189 3-163 (653)
225 PRK12736 elongation factor Tu; 99.7 4.7E-16 1E-20 133.4 15.2 144 27-176 11-179 (394)
226 PRK12735 elongation factor Tu; 99.7 7.7E-16 1.7E-20 132.1 15.4 145 26-176 10-179 (396)
227 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.3E-16 4.9E-21 124.8 11.0 165 30-197 1-183 (232)
228 COG0532 InfB Translation initi 99.7 1.4E-15 3E-20 130.2 16.1 150 28-187 5-167 (509)
229 cd04169 RF3 RF3 subfamily. Pe 99.7 1.5E-15 3.3E-20 123.5 15.6 115 29-147 3-137 (267)
230 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.3E-15 2.9E-20 120.7 14.9 151 30-186 1-219 (224)
231 TIGR00485 EF-Tu translation el 99.7 1.1E-15 2.4E-20 131.2 15.3 145 26-176 10-179 (394)
232 cd04104 p47_IIGP_like p47 (47- 99.7 4.1E-15 8.9E-20 116.0 15.3 157 29-192 2-186 (197)
233 CHL00071 tufA elongation facto 99.7 2.8E-15 6E-20 129.2 15.6 148 25-178 9-181 (409)
234 cd01850 CDC_Septin CDC/Septin. 99.7 2.9E-15 6.3E-20 122.4 14.6 141 27-173 3-185 (276)
235 PLN03126 Elongation factor Tu; 99.7 5.2E-15 1.1E-19 129.0 16.5 148 24-177 77-249 (478)
236 cd01885 EF2 EF2 (for archaea a 99.6 2.5E-15 5.3E-20 118.8 12.4 113 30-146 2-138 (222)
237 cd01886 EF-G Elongation factor 99.6 4.3E-15 9.3E-20 121.0 14.0 112 30-147 1-130 (270)
238 PRK05124 cysN sulfate adenylyl 99.6 3.4E-15 7.3E-20 130.6 13.6 151 26-181 25-216 (474)
239 COG0536 Obg Predicted GTPase [ 99.6 5.7E-15 1.2E-19 120.0 13.4 164 29-193 160-336 (369)
240 KOG1145 Mitochondrial translat 99.6 1.1E-14 2.3E-19 124.4 15.4 152 25-187 150-313 (683)
241 TIGR02034 CysN sulfate adenyly 99.6 4.7E-15 1E-19 127.7 13.4 147 29-180 1-187 (406)
242 PF01926 MMR_HSR1: 50S ribosom 99.6 1.8E-14 3.9E-19 102.8 14.3 106 30-142 1-116 (116)
243 PRK00741 prfC peptide chain re 99.6 1.5E-14 3.3E-19 127.7 16.3 117 27-147 9-145 (526)
244 PLN00043 elongation factor 1-a 99.6 1.2E-14 2.6E-19 126.2 15.3 149 26-180 5-203 (447)
245 cd01899 Ygr210 Ygr210 subfamil 99.6 2.7E-14 5.8E-19 118.5 16.6 81 31-111 1-110 (318)
246 cd04170 EF-G_bact Elongation f 99.6 1.1E-14 2.5E-19 118.8 13.8 141 30-178 1-161 (268)
247 COG1163 DRG Predicted GTPase [ 99.6 1.9E-14 4.1E-19 116.1 14.5 157 24-189 59-288 (365)
248 PRK13351 elongation factor G; 99.6 2.8E-14 6E-19 130.7 17.6 118 24-147 4-139 (687)
249 PRK00049 elongation factor Tu; 99.6 2.8E-14 6E-19 122.5 16.3 145 26-176 10-179 (396)
250 KOG0077 Vesicle coat complex C 99.6 3.6E-15 7.7E-20 108.8 8.7 153 28-187 20-190 (193)
251 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 5.8E-14 1.3E-18 109.4 16.3 159 29-191 1-185 (196)
252 PRK05506 bifunctional sulfate 99.6 1.4E-14 2.9E-19 131.4 14.2 152 24-180 20-211 (632)
253 PLN03127 Elongation factor Tu; 99.6 3.7E-14 8.1E-19 123.0 16.2 159 23-187 56-249 (447)
254 KOG0462 Elongation factor-type 99.6 1.5E-14 3.2E-19 123.6 13.2 160 24-190 56-235 (650)
255 KOG1191 Mitochondrial GTPase [ 99.6 8.6E-15 1.9E-19 123.7 11.1 167 25-194 265-454 (531)
256 PTZ00141 elongation factor 1- 99.6 2.8E-14 6E-19 123.9 14.3 150 26-180 5-203 (446)
257 COG3596 Predicted GTPase [Gene 99.6 1.5E-14 3.2E-19 114.5 10.1 169 18-190 29-222 (296)
258 PRK12739 elongation factor G; 99.6 1.4E-13 3.1E-18 125.8 18.1 118 24-147 4-139 (691)
259 TIGR00484 EF-G translation elo 99.6 9.6E-14 2.1E-18 127.0 16.4 119 23-147 5-141 (689)
260 PTZ00327 eukaryotic translatio 99.6 4.5E-14 9.7E-19 122.5 12.9 164 24-189 30-232 (460)
261 COG0481 LepA Membrane GTPase L 99.6 1.2E-13 2.5E-18 116.5 14.5 158 25-189 6-185 (603)
262 KOG1490 GTP-binding protein CR 99.5 5.7E-14 1.2E-18 118.9 10.9 173 20-195 160-346 (620)
263 PRK09602 translation-associate 99.5 5.4E-13 1.2E-17 113.9 16.4 83 29-111 2-113 (396)
264 TIGR00503 prfC peptide chain r 99.5 2E-13 4.3E-18 120.6 13.9 118 26-147 9-146 (527)
265 PF09439 SRPRB: Signal recogni 99.5 3.4E-14 7.4E-19 107.9 7.7 115 29-147 4-126 (181)
266 PRK09866 hypothetical protein; 99.5 8.6E-13 1.9E-17 116.1 17.0 108 78-187 231-350 (741)
267 COG4917 EutP Ethanolamine util 99.5 1.1E-13 2.5E-18 96.4 9.2 136 30-187 3-143 (148)
268 PRK12740 elongation factor G; 99.5 8.5E-13 1.8E-17 120.7 15.2 108 34-147 1-126 (668)
269 PRK00007 elongation factor G; 99.5 1.7E-12 3.6E-17 118.9 16.6 119 23-147 5-141 (693)
270 PRK14845 translation initiatio 99.4 2.6E-12 5.5E-17 120.1 15.8 142 40-188 473-671 (1049)
271 COG5256 TEF1 Translation elong 99.4 6.5E-13 1.4E-17 110.7 10.3 151 27-180 6-201 (428)
272 cd01853 Toc34_like Toc34-like 99.4 3.3E-12 7.2E-17 102.7 13.4 124 20-146 23-162 (249)
273 TIGR00991 3a0901s02IAP34 GTP-b 99.4 1.1E-11 2.4E-16 101.4 15.9 123 23-147 33-167 (313)
274 KOG1707 Predicted Ras related/ 99.4 5.5E-12 1.2E-16 108.8 14.6 172 13-189 410-582 (625)
275 PF04548 AIG1: AIG1 family; I 99.4 6.1E-12 1.3E-16 99.2 13.8 160 29-192 1-188 (212)
276 TIGR00490 aEF-2 translation el 99.4 1.1E-12 2.4E-17 120.5 10.8 119 25-147 16-152 (720)
277 KOG3905 Dynein light intermedi 99.4 1.3E-11 2.9E-16 99.7 15.0 162 27-191 51-291 (473)
278 PTZ00258 GTP-binding protein; 99.4 7E-12 1.5E-16 106.2 13.8 86 26-111 19-126 (390)
279 KOG1144 Translation initiation 99.4 3E-12 6.5E-17 112.9 11.6 164 26-196 473-693 (1064)
280 cd00066 G-alpha G protein alph 99.4 2.9E-11 6.2E-16 100.9 16.7 118 76-193 160-314 (317)
281 smart00275 G_alpha G protein a 99.4 5.9E-11 1.3E-15 99.9 16.6 117 77-193 184-337 (342)
282 TIGR00157 ribosome small subun 99.3 4.8E-12 1E-16 101.8 9.1 96 88-187 24-120 (245)
283 TIGR00101 ureG urease accessor 99.3 2.5E-11 5.3E-16 94.7 12.7 101 78-189 93-195 (199)
284 KOG0090 Signal recognition par 99.3 2.6E-11 5.6E-16 92.5 12.0 113 30-147 40-159 (238)
285 PRK07560 elongation factor EF- 99.3 2.1E-11 4.5E-16 112.3 13.0 118 25-146 17-152 (731)
286 PRK09601 GTP-binding protein Y 99.3 1.1E-10 2.3E-15 98.0 15.8 83 29-111 3-107 (364)
287 PF05783 DLIC: Dynein light in 99.3 7E-11 1.5E-15 102.6 15.1 161 28-191 25-265 (472)
288 PRK13768 GTPase; Provisional 99.3 1.6E-11 3.6E-16 99.2 10.4 109 78-189 98-246 (253)
289 TIGR02836 spore_IV_A stage IV 99.3 1.5E-10 3.3E-15 97.4 16.2 164 26-196 15-239 (492)
290 COG1217 TypA Predicted membran 99.3 4.6E-11 9.9E-16 100.8 13.2 159 28-190 5-195 (603)
291 PLN00116 translation elongatio 99.3 1.2E-11 2.7E-16 115.2 10.9 119 24-146 15-163 (843)
292 COG2895 CysN GTPases - Sulfate 99.3 3.1E-11 6.7E-16 98.7 11.7 149 27-180 5-193 (431)
293 smart00010 small_GTPase Small 99.3 1.1E-11 2.4E-16 88.9 8.3 114 29-179 1-115 (124)
294 PTZ00416 elongation factor 2; 99.3 1.8E-11 3.8E-16 114.0 11.0 118 25-146 16-157 (836)
295 PRK09435 membrane ATPase/prote 99.3 6.3E-11 1.4E-15 98.7 12.3 103 77-190 149-260 (332)
296 PF00350 Dynamin_N: Dynamin fa 99.3 4.3E-11 9.4E-16 90.7 9.6 62 79-143 103-168 (168)
297 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.6E-10 3.4E-15 92.0 12.8 140 26-177 37-183 (225)
298 KOG0461 Selenocysteine-specifi 99.2 1.8E-10 3.9E-15 94.0 12.7 159 27-189 6-192 (522)
299 KOG1532 GTPase XAB1, interacts 99.2 3.5E-11 7.6E-16 95.3 7.8 110 77-189 116-263 (366)
300 TIGR00073 hypB hydrogenase acc 99.2 1.1E-10 2.3E-15 91.8 10.4 151 27-188 21-205 (207)
301 PF05049 IIGP: Interferon-indu 99.2 1.5E-10 3.3E-15 97.2 11.7 155 27-188 34-216 (376)
302 PF03029 ATP_bind_1: Conserved 99.2 6.2E-12 1.3E-16 100.6 3.2 111 78-188 92-235 (238)
303 PF00735 Septin: Septin; Inte 99.2 2.8E-10 6E-15 93.2 11.7 140 27-171 3-182 (281)
304 KOG0082 G-protein alpha subuni 99.2 1.7E-09 3.8E-14 89.8 15.5 127 66-194 186-348 (354)
305 TIGR00993 3a0901s04IAP86 chlor 99.2 1.4E-09 3.1E-14 96.4 15.6 123 23-147 113-250 (763)
306 KOG0410 Predicted GTP binding 99.2 8.7E-11 1.9E-15 95.0 6.8 168 24-203 174-354 (410)
307 KOG0458 Elongation factor 1 al 99.1 3.6E-10 7.7E-15 97.8 10.5 155 26-181 175-373 (603)
308 COG0480 FusA Translation elong 99.1 1.1E-09 2.3E-14 99.2 13.2 119 25-147 7-142 (697)
309 COG0378 HypB Ni2+-binding GTPa 99.1 4E-10 8.8E-15 85.3 8.8 79 103-189 120-200 (202)
310 TIGR00750 lao LAO/AO transport 99.1 7.4E-10 1.6E-14 91.9 11.2 102 77-189 127-237 (300)
311 smart00053 DYNc Dynamin, GTPas 99.1 1E-09 2.2E-14 87.6 11.3 119 26-147 24-206 (240)
312 COG5257 GCD11 Translation init 99.1 2.7E-10 5.9E-15 92.2 7.8 162 26-189 8-201 (415)
313 COG0012 Predicted GTPase, prob 99.1 4.9E-09 1.1E-13 87.1 14.7 84 28-111 2-108 (372)
314 KOG3886 GTP-binding protein [S 99.1 6.3E-10 1.4E-14 86.1 8.7 146 28-174 4-163 (295)
315 KOG0468 U5 snRNP-specific prot 99.1 1.5E-09 3.3E-14 95.2 11.0 119 23-145 123-261 (971)
316 COG5019 CDC3 Septin family pro 99.0 9.1E-09 2E-13 85.0 14.3 162 26-194 21-223 (373)
317 COG4108 PrfC Peptide chain rel 99.0 3E-09 6.4E-14 89.5 11.3 131 30-166 14-164 (528)
318 KOG0705 GTPase-activating prot 99.0 1.4E-09 3E-14 93.5 9.5 163 27-196 29-195 (749)
319 cd01900 YchF YchF subfamily. 99.0 1.7E-09 3.6E-14 88.0 8.7 81 31-111 1-103 (274)
320 KOG2655 Septin family protein 99.0 1.2E-08 2.6E-13 84.9 12.7 161 27-194 20-218 (366)
321 COG3276 SelB Selenocysteine-sp 99.0 9.9E-09 2.1E-13 86.6 11.8 153 30-189 2-161 (447)
322 KOG3887 Predicted small GTPase 98.9 3.9E-09 8.4E-14 82.4 8.2 169 28-199 27-211 (347)
323 KOG1486 GTP-binding protein DR 98.9 3.7E-08 8E-13 77.5 13.3 88 26-115 60-154 (364)
324 PF03308 ArgK: ArgK protein; 98.9 5.6E-10 1.2E-14 88.6 3.0 152 26-189 27-229 (266)
325 COG1703 ArgK Putative periplas 98.9 1.6E-08 3.4E-13 81.6 11.2 157 23-190 46-254 (323)
326 PRK10463 hydrogenase nickel in 98.9 3.5E-09 7.6E-14 86.2 7.0 55 134-188 231-287 (290)
327 COG0050 TufB GTPases - transla 98.9 3.4E-08 7.3E-13 79.3 11.8 138 27-173 11-176 (394)
328 PRK12289 GTPase RsgA; Reviewed 98.9 2.1E-08 4.5E-13 84.6 10.5 92 92-188 81-173 (352)
329 cd01859 MJ1464 MJ1464. This f 98.9 1.3E-08 2.9E-13 76.2 8.4 95 90-190 2-96 (156)
330 cd01855 YqeH YqeH. YqeH is an 98.9 2.1E-08 4.6E-13 77.7 9.5 94 90-190 24-125 (190)
331 PF00503 G-alpha: G-protein al 98.8 6.4E-08 1.4E-12 83.3 12.5 122 66-189 226-389 (389)
332 KOG1954 Endocytosis/signaling 98.8 5.5E-08 1.2E-12 80.4 10.8 124 21-147 51-225 (532)
333 KOG1547 Septin CDC10 and relat 98.8 7.5E-08 1.6E-12 75.2 10.9 146 26-176 44-229 (336)
334 KOG0448 Mitofusin 1 GTPase, in 98.8 1.6E-07 3.4E-12 83.1 13.2 144 26-173 107-309 (749)
335 cd01854 YjeQ_engC YjeQ/EngC. 98.8 3.5E-08 7.6E-13 81.3 8.7 87 96-187 74-161 (287)
336 PRK12288 GTPase RsgA; Reviewed 98.7 5.5E-08 1.2E-12 82.0 9.2 88 98-188 118-206 (347)
337 PRK00098 GTPase RsgA; Reviewed 98.7 4.8E-08 1E-12 81.0 8.3 87 97-187 77-164 (298)
338 cd04178 Nucleostemin_like Nucl 98.7 4E-08 8.7E-13 74.8 6.9 58 25-86 114-171 (172)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 4.2E-08 9.2E-13 72.3 6.5 54 30-87 85-138 (141)
340 KOG2486 Predicted GTPase [Gene 98.7 8.9E-08 1.9E-12 76.4 8.5 156 23-187 131-313 (320)
341 cd01858 NGP_1 NGP-1. Autoanti 98.7 7.9E-08 1.7E-12 72.1 7.2 56 27-86 101-156 (157)
342 TIGR00092 GTP-binding protein 98.6 1.7E-07 3.7E-12 79.0 8.4 83 29-111 3-108 (368)
343 KOG1491 Predicted GTP-binding 98.6 1.1E-07 2.5E-12 77.7 6.9 86 26-111 18-125 (391)
344 TIGR03597 GTPase_YqeH ribosome 98.6 2.3E-07 5E-12 78.9 9.1 95 87-188 50-151 (360)
345 TIGR03348 VI_IcmF type VI secr 98.6 4.4E-07 9.6E-12 87.8 11.8 114 29-147 112-257 (1169)
346 COG5258 GTPBP1 GTPase [General 98.6 1.2E-06 2.6E-11 73.0 12.6 151 25-179 114-328 (527)
347 PRK09563 rbgA GTPase YlqF; Rev 98.5 3.5E-07 7.6E-12 75.5 8.1 58 26-87 119-176 (287)
348 cd01856 YlqF YlqF. Proteins o 98.5 3E-07 6.5E-12 70.0 7.1 58 26-87 113-170 (171)
349 TIGR03596 GTPase_YlqF ribosome 98.5 3.6E-07 7.8E-12 75.0 7.5 57 27-87 117-173 (276)
350 KOG0099 G protein subunit Galp 98.5 3.1E-07 6.6E-12 72.7 6.5 114 77-190 202-369 (379)
351 cd01855 YqeH YqeH. YqeH is an 98.5 2.5E-07 5.5E-12 71.6 5.9 56 28-86 127-189 (190)
352 KOG0464 Elongation factor G [T 98.5 2E-07 4.3E-12 78.2 5.0 121 23-147 32-168 (753)
353 cd01859 MJ1464 MJ1464. This f 98.5 6.1E-07 1.3E-11 67.2 7.3 56 27-86 100-155 (156)
354 cd01858 NGP_1 NGP-1. Autoanti 98.4 1E-06 2.2E-11 66.1 7.6 88 97-189 5-94 (157)
355 COG5192 BMS1 GTP-binding prote 98.4 3.1E-06 6.7E-11 73.8 11.1 115 20-147 61-177 (1077)
356 COG1161 Predicted GTPases [Gen 98.4 5.8E-07 1.2E-11 75.2 6.4 57 27-87 131-187 (322)
357 KOG1143 Predicted translation 98.4 1.5E-06 3.4E-11 72.1 8.7 149 28-180 167-378 (591)
358 cd01849 YlqF_related_GTPase Yl 98.4 1.5E-06 3.3E-11 65.0 8.1 85 102-190 1-85 (155)
359 COG1618 Predicted nucleotide k 98.4 3.6E-05 7.8E-10 56.9 14.8 146 27-189 4-175 (179)
360 KOG0467 Translation elongation 98.4 1.2E-06 2.6E-11 78.5 8.5 115 23-144 4-135 (887)
361 TIGR01425 SRP54_euk signal rec 98.4 4E-06 8.7E-11 72.2 11.5 85 77-171 183-273 (429)
362 PF03193 DUF258: Protein of un 98.4 2.7E-07 5.9E-12 68.9 3.4 59 30-91 37-101 (161)
363 cd01849 YlqF_related_GTPase Yl 98.4 1.3E-06 2.7E-11 65.4 6.8 56 26-86 98-154 (155)
364 KOG0447 Dynamin-like GTP bindi 98.4 1.1E-05 2.3E-10 70.2 13.0 136 78-219 413-567 (980)
365 KOG0463 GTP-binding protein GP 98.4 1.1E-06 2.3E-11 73.2 6.6 144 28-179 133-347 (641)
366 cd01851 GBP Guanylate-binding 98.4 9.4E-06 2E-10 64.5 11.8 87 26-112 5-103 (224)
367 cd03112 CobW_like The function 98.3 2.8E-06 6E-11 63.8 8.1 63 77-145 87-158 (158)
368 PF09547 Spore_IV_A: Stage IV 98.3 2E-05 4.4E-10 66.9 13.4 163 27-196 16-239 (492)
369 PRK10416 signal recognition pa 98.3 5E-06 1.1E-10 69.4 9.7 95 77-183 197-303 (318)
370 KOG1487 GTP-binding protein DR 98.3 6.4E-06 1.4E-10 65.4 9.4 87 29-117 60-153 (358)
371 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 2.1E-06 4.5E-11 63.2 6.4 77 95-177 6-84 (141)
372 PRK14974 cell division protein 98.3 4.1E-06 9E-11 70.2 8.8 95 77-183 223-323 (336)
373 KOG0465 Mitochondrial elongati 98.3 4E-06 8.7E-11 73.6 8.5 120 24-147 35-170 (721)
374 cd01856 YlqF YlqF. Proteins o 98.3 2.8E-06 6.2E-11 64.6 6.9 91 91-189 10-100 (171)
375 TIGR00064 ftsY signal recognit 98.3 1.3E-05 2.9E-10 65.5 11.1 95 77-183 155-261 (272)
376 PRK12288 GTPase RsgA; Reviewed 98.2 2.1E-06 4.6E-11 72.5 6.1 58 31-91 208-271 (347)
377 PRK01889 GTPase RsgA; Reviewed 98.2 6.1E-06 1.3E-10 70.1 8.2 83 98-186 110-193 (356)
378 TIGR03596 GTPase_YlqF ribosome 98.2 7E-06 1.5E-10 67.4 8.3 92 93-192 14-105 (276)
379 KOG4273 Uncharacterized conser 98.2 2.4E-05 5.2E-10 61.8 10.7 163 28-194 4-226 (418)
380 KOG0460 Mitochondrial translat 98.2 1.1E-05 2.5E-10 66.3 9.0 138 26-172 52-217 (449)
381 KOG0085 G protein subunit Galp 98.2 1.3E-06 2.7E-11 68.2 3.0 118 77-194 199-353 (359)
382 COG3523 IcmF Type VI protein s 98.2 8.8E-06 1.9E-10 77.5 9.0 115 29-147 126-270 (1188)
383 KOG0466 Translation initiation 98.2 1E-06 2.2E-11 71.3 2.3 105 79-189 127-240 (466)
384 PRK12289 GTPase RsgA; Reviewed 98.2 3.6E-06 7.8E-11 71.1 5.7 57 31-90 175-237 (352)
385 PRK12727 flagellar biosynthesi 98.2 5.8E-05 1.2E-09 66.5 13.2 137 28-178 350-523 (559)
386 PF00448 SRP54: SRP54-type pro 98.2 5.6E-06 1.2E-10 64.4 6.3 92 77-180 84-181 (196)
387 PRK13796 GTPase YqeH; Provisio 98.1 3.7E-06 8.1E-11 71.7 5.5 57 29-88 161-221 (365)
388 PRK13796 GTPase YqeH; Provisio 98.1 2.4E-05 5.1E-10 66.8 9.8 93 88-188 57-157 (365)
389 TIGR03597 GTPase_YqeH ribosome 98.1 6.6E-06 1.4E-10 70.0 6.5 125 29-162 155-293 (360)
390 PRK14721 flhF flagellar biosyn 98.1 3.9E-05 8.5E-10 66.2 11.0 143 28-183 191-371 (420)
391 PRK14722 flhF flagellar biosyn 98.1 3E-05 6.5E-10 65.8 9.8 147 28-180 137-322 (374)
392 TIGR00157 ribosome small subun 98.1 8.2E-06 1.8E-10 65.8 5.9 58 30-91 122-185 (245)
393 PRK09563 rbgA GTPase YlqF; Rev 98.1 2.2E-05 4.7E-10 64.9 8.5 92 93-192 17-108 (287)
394 KOG1424 Predicted GTP-binding 98.1 4.9E-06 1.1E-10 71.7 4.7 57 28-88 314-370 (562)
395 COG1162 Predicted GTPases [Gen 98.1 7.4E-06 1.6E-10 66.9 5.5 59 30-91 166-230 (301)
396 PRK11889 flhF flagellar biosyn 97.9 6.5E-05 1.4E-09 64.0 9.3 92 77-180 321-418 (436)
397 cd01854 YjeQ_engC YjeQ/EngC. 97.9 2.3E-05 5E-10 64.7 6.4 60 29-91 162-227 (287)
398 KOG3859 Septins (P-loop GTPase 97.9 7.2E-05 1.6E-09 60.1 8.7 117 26-147 40-190 (406)
399 PRK00098 GTPase RsgA; Reviewed 97.9 2E-05 4.3E-10 65.4 5.7 57 30-89 166-228 (298)
400 cd03115 SRP The signal recogni 97.9 8.9E-05 1.9E-09 56.4 8.8 83 77-169 83-171 (173)
401 PF03266 NTPase_1: NTPase; In 97.9 0.00019 4E-09 54.4 9.8 136 30-179 1-164 (168)
402 KOG0459 Polypeptide release fa 97.9 2.2E-05 4.8E-10 66.0 5.0 159 22-182 73-278 (501)
403 PRK05703 flhF flagellar biosyn 97.9 0.00022 4.9E-09 62.0 11.4 94 77-182 300-401 (424)
404 PRK14723 flhF flagellar biosyn 97.8 0.00018 3.8E-09 66.2 10.8 145 29-183 186-368 (767)
405 cd03114 ArgK-like The function 97.8 0.00013 2.8E-09 54.2 8.2 57 77-144 92-148 (148)
406 COG1162 Predicted GTPases [Gen 97.8 0.00014 3E-09 59.5 8.9 93 93-188 72-165 (301)
407 PRK11537 putative GTP-binding 97.8 0.00023 4.9E-09 59.6 10.4 85 77-171 91-186 (318)
408 PRK13695 putative NTPase; Prov 97.8 0.00044 9.6E-09 52.6 11.1 76 97-188 93-171 (174)
409 PRK00771 signal recognition pa 97.8 4.2E-05 9.1E-10 66.5 5.8 83 78-171 177-266 (437)
410 PRK06995 flhF flagellar biosyn 97.8 0.00048 1E-08 60.5 11.9 94 78-183 336-436 (484)
411 PRK12723 flagellar biosynthesi 97.8 0.00041 8.9E-09 59.5 11.3 95 77-183 255-357 (388)
412 COG1419 FlhF Flagellar GTP-bin 97.8 0.00029 6.3E-09 59.9 10.2 140 28-179 203-378 (407)
413 PRK12726 flagellar biosynthesi 97.7 0.0003 6.4E-09 59.7 9.9 92 77-180 286-383 (407)
414 PF11111 CENP-M: Centromere pr 97.7 0.0021 4.6E-08 48.3 13.3 142 23-193 10-152 (176)
415 COG0523 Putative GTPases (G3E 97.7 0.00084 1.8E-08 56.1 12.5 94 77-179 85-190 (323)
416 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00026 5.6E-09 43.0 6.5 49 95-144 8-58 (58)
417 PRK12724 flagellar biosynthesi 97.7 0.00014 3E-09 62.5 7.4 140 29-180 224-400 (432)
418 PF02492 cobW: CobW/HypB/UreG, 97.7 9.7E-05 2.1E-09 56.6 5.4 81 77-164 85-171 (178)
419 PRK06731 flhF flagellar biosyn 97.6 0.00042 9E-09 56.5 9.1 140 29-180 76-252 (270)
420 TIGR00959 ffh signal recogniti 97.6 0.00044 9.5E-09 60.0 9.7 85 77-171 183-273 (428)
421 PRK10867 signal recognition pa 97.6 0.00068 1.5E-08 58.9 10.8 85 77-171 184-274 (433)
422 KOG2484 GTPase [General functi 97.6 4.8E-05 1E-09 63.9 3.3 58 25-86 249-306 (435)
423 KOG0780 Signal recognition par 97.6 0.00013 2.9E-09 61.2 5.3 65 75-145 182-252 (483)
424 KOG0469 Elongation factor 2 [T 97.4 0.0006 1.3E-08 59.2 7.9 128 27-158 18-176 (842)
425 cd02038 FleN-like FleN is a me 97.4 0.00063 1.4E-08 49.8 6.8 106 32-145 4-109 (139)
426 COG3640 CooC CO dehydrogenase 97.4 0.00054 1.2E-08 53.9 6.6 60 79-145 136-197 (255)
427 PF05621 TniB: Bacterial TniB 97.4 0.0009 2E-08 54.9 8.1 105 24-142 57-189 (302)
428 cd02042 ParA ParA and ParB of 97.4 0.0012 2.6E-08 45.6 7.6 82 31-124 2-84 (104)
429 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0014 3E-08 44.1 7.9 69 31-113 2-71 (99)
430 cd00009 AAA The AAA+ (ATPases 97.3 0.0018 4E-08 46.8 8.3 26 28-53 19-44 (151)
431 KOG2485 Conserved ATP/GTP bind 97.3 0.00051 1.1E-08 56.1 5.3 59 26-86 141-205 (335)
432 COG0541 Ffh Signal recognition 97.2 0.00055 1.2E-08 58.5 5.2 85 77-171 183-273 (451)
433 COG0552 FtsY Signal recognitio 97.2 0.0035 7.6E-08 52.0 9.7 93 77-182 222-327 (340)
434 PF13207 AAA_17: AAA domain; P 97.2 0.0003 6.4E-09 50.0 3.1 22 30-51 1-22 (121)
435 cd03111 CpaE_like This protein 97.2 0.0033 7.2E-08 43.7 7.8 62 78-142 44-106 (106)
436 PRK08118 topology modulation p 97.1 0.00036 7.7E-09 52.9 3.0 22 30-51 3-24 (167)
437 cd03110 Fer4_NifH_child This p 97.1 0.0058 1.3E-07 46.6 9.7 86 75-169 91-176 (179)
438 PF13555 AAA_29: P-loop contai 97.1 0.00051 1.1E-08 42.7 3.0 21 30-50 25-45 (62)
439 PF13671 AAA_33: AAA domain; P 97.1 0.00039 8.5E-09 50.9 2.9 21 31-51 2-22 (143)
440 TIGR02475 CobW cobalamin biosy 97.1 0.012 2.6E-07 49.9 12.1 98 77-183 93-223 (341)
441 COG0563 Adk Adenylate kinase a 97.1 0.00043 9.3E-09 53.0 3.1 22 30-51 2-23 (178)
442 PRK07261 topology modulation p 97.1 0.00047 1E-08 52.4 3.0 22 30-51 2-23 (171)
443 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0097 2.1E-07 45.5 9.9 24 29-52 26-49 (177)
444 PF13521 AAA_28: AAA domain; P 97.0 0.00047 1E-08 51.9 2.5 22 30-51 1-22 (163)
445 KOG2423 Nucleolar GTPase [Gene 97.0 0.00026 5.6E-09 59.6 1.1 84 25-115 304-389 (572)
446 COG3845 ABC-type uncharacteriz 97.0 0.0042 9.2E-08 53.9 8.4 54 89-144 147-201 (501)
447 COG0194 Gmk Guanylate kinase [ 97.0 0.0003 6.5E-09 53.4 1.1 25 28-52 4-28 (191)
448 KOG1534 Putative transcription 97.0 0.0018 3.9E-08 50.2 5.2 21 29-49 4-24 (273)
449 PF07015 VirC1: VirC1 protein; 97.0 0.0085 1.8E-07 47.4 9.1 102 77-183 84-187 (231)
450 KOG1533 Predicted GTPase [Gene 96.9 0.00086 1.9E-08 52.8 3.5 68 78-147 98-177 (290)
451 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0033 7.3E-08 45.6 6.4 23 30-52 24-46 (133)
452 cd02019 NK Nucleoside/nucleoti 96.9 0.00085 1.8E-08 42.8 2.9 21 31-51 2-22 (69)
453 PF03215 Rad17: Rad17 cell cyc 96.9 0.0058 1.3E-07 54.5 8.8 22 30-51 47-68 (519)
454 PF00005 ABC_tran: ABC transpo 96.9 0.00086 1.9E-08 48.7 3.1 24 30-53 13-36 (137)
455 PRK14737 gmk guanylate kinase; 96.9 0.00071 1.5E-08 52.2 2.7 24 29-52 5-28 (186)
456 COG1126 GlnQ ABC-type polar am 96.9 0.0011 2.4E-08 51.7 3.6 24 30-53 30-53 (240)
457 PRK01889 GTPase RsgA; Reviewed 96.8 0.0013 2.8E-08 56.0 4.0 25 29-53 196-220 (356)
458 PRK05416 glmZ(sRNA)-inactivati 96.8 0.015 3.3E-07 47.9 9.9 86 30-144 8-95 (288)
459 smart00382 AAA ATPases associa 96.8 0.0012 2.7E-08 47.3 3.2 25 29-53 3-27 (148)
460 cd02036 MinD Bacterial cell di 96.8 0.041 8.9E-07 41.6 11.8 84 78-168 64-147 (179)
461 TIGR00235 udk uridine kinase. 96.8 0.0014 3.1E-08 51.3 3.6 26 26-51 4-29 (207)
462 cd00071 GMPK Guanosine monopho 96.8 0.0014 3E-08 47.9 3.2 21 31-51 2-22 (137)
463 PRK10646 ADP-binding protein; 96.8 0.0087 1.9E-07 44.4 7.4 22 30-51 30-51 (153)
464 COG1116 TauB ABC-type nitrate/ 96.7 0.0016 3.5E-08 51.8 3.6 24 30-53 31-54 (248)
465 PRK14738 gmk guanylate kinase; 96.7 0.0013 2.9E-08 51.5 3.2 26 27-52 12-37 (206)
466 PF00004 AAA: ATPase family as 96.7 0.0014 3E-08 47.0 3.0 22 31-52 1-22 (132)
467 PF13238 AAA_18: AAA domain; P 96.7 0.0013 2.8E-08 47.0 2.8 22 31-52 1-22 (129)
468 PRK06217 hypothetical protein; 96.7 0.0014 3E-08 50.4 3.0 22 30-51 3-24 (183)
469 PRK04195 replication factor C 96.7 0.018 4E-07 51.1 10.4 25 28-52 39-63 (482)
470 COG1136 SalX ABC-type antimicr 96.7 0.0019 4E-08 51.1 3.6 24 30-53 33-56 (226)
471 PRK14530 adenylate kinase; Pro 96.6 0.0016 3.6E-08 51.3 3.1 21 30-50 5-25 (215)
472 KOG0446 Vacuolar sorting prote 96.6 0.00096 2.1E-08 60.9 1.9 123 23-147 24-213 (657)
473 PF02367 UPF0079: Uncharacteri 96.6 0.0031 6.7E-08 45.1 4.1 22 30-51 17-38 (123)
474 cd01131 PilT Pilus retraction 96.6 0.0083 1.8E-07 46.7 6.9 22 31-52 4-25 (198)
475 PRK10078 ribose 1,5-bisphospho 96.6 0.0019 4.1E-08 49.7 3.2 23 30-52 4-26 (186)
476 KOG1970 Checkpoint RAD17-RFC c 96.6 0.017 3.6E-07 51.1 9.1 21 31-51 113-133 (634)
477 COG0802 Predicted ATPase or ki 96.6 0.0088 1.9E-07 44.0 6.3 23 30-52 27-49 (149)
478 PRK03839 putative kinase; Prov 96.6 0.0019 4.2E-08 49.3 3.0 22 30-51 2-23 (180)
479 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0019 4.1E-08 49.5 2.9 21 29-49 4-24 (188)
480 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.046 1E-06 40.2 10.2 23 30-52 28-50 (144)
481 TIGR02322 phosphon_PhnN phosph 96.5 0.0019 4.1E-08 49.3 2.8 22 30-51 3-24 (179)
482 TIGR03263 guanyl_kin guanylate 96.5 0.0021 4.6E-08 49.0 3.0 23 30-52 3-25 (180)
483 KOG4181 Uncharacterized conser 96.5 0.011 2.4E-07 49.2 7.1 26 28-53 188-213 (491)
484 cd01130 VirB11-like_ATPase Typ 96.5 0.0023 5E-08 49.3 3.1 25 28-52 25-49 (186)
485 PF03205 MobB: Molybdopterin g 96.5 0.0023 4.9E-08 47.0 2.8 23 30-52 2-24 (140)
486 cd04178 Nucleostemin_like Nucl 96.5 0.0066 1.4E-07 46.2 5.4 44 102-147 1-44 (172)
487 cd02023 UMPK Uridine monophosp 96.5 0.0021 4.7E-08 49.9 2.7 21 31-51 2-22 (198)
488 cd00820 PEPCK_HprK Phosphoenol 96.5 0.0025 5.5E-08 44.3 2.8 20 30-49 17-36 (107)
489 COG1120 FepC ABC-type cobalami 96.5 0.0024 5.2E-08 51.5 3.0 22 30-51 30-51 (258)
490 PRK13949 shikimate kinase; Pro 96.5 0.0025 5.3E-08 48.4 2.9 22 30-51 3-24 (169)
491 PF07728 AAA_5: AAA domain (dy 96.4 0.0027 5.9E-08 46.2 3.0 23 30-52 1-23 (139)
492 cd03238 ABC_UvrA The excision 96.4 0.0027 5.9E-08 48.5 3.1 21 29-49 22-42 (176)
493 PF04665 Pox_A32: Poxvirus A32 96.4 0.0027 5.8E-08 50.8 3.1 26 26-51 11-36 (241)
494 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.0026 5.7E-08 51.1 3.0 22 30-51 32-53 (254)
495 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.0028 6.1E-08 50.0 3.2 23 30-52 32-54 (218)
496 COG1117 PstB ABC-type phosphat 96.4 0.0073 1.6E-07 47.2 5.2 21 30-50 35-55 (253)
497 cd01428 ADK Adenylate kinase ( 96.4 0.0026 5.6E-08 49.1 2.9 22 30-51 1-22 (194)
498 PRK14531 adenylate kinase; Pro 96.4 0.0028 6E-08 48.7 3.0 23 29-51 3-25 (183)
499 COG3839 MalK ABC-type sugar tr 96.4 0.0033 7.2E-08 52.7 3.6 23 31-53 32-54 (338)
500 PRK14532 adenylate kinase; Pro 96.4 0.0028 6.1E-08 48.8 3.0 21 30-50 2-22 (188)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-41 Score=248.89 Aligned_cols=176 Identities=48% Similarity=0.813 Sum_probs=169.2
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
....++.+||+|+|+.|+|||.|+.||.++.|...+..|+++++..+.+.++|+.+++++|||+|+++|+.....+++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHH
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDT 180 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 180 (237)
+++|+|||+++.+||..+..|+.++..+...++|.++|+||+|+.+.+.++.++++.|+..++++ ++++||+++.++++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhhhccc
Q 026548 181 AFFRLLQEIYGAVSKKE 197 (237)
Q Consensus 181 ~~~~l~~~i~~~~~~~~ 197 (237)
+|..+...+.++....-
T Consensus 163 ~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLHV 179 (205)
T ss_pred HHHHHHHHHHHhcccCC
Confidence 99999999988877543
No 2
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=233.50 Aligned_cols=203 Identities=38% Similarity=0.654 Sum_probs=176.0
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
......+||+++|..|+|||||+.+|..+.|++....+++.++.++.+.++|..+++.||||+|+++|+.+...|++++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 34567899999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 181 (237)
++|+|||++.+++|..+..|+.++..++. .++..++|+||+|....+.+..++...|++++++.|+++||++.+++...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 99999999999999999999999999887 77888999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccccCCCccCCCCCCCCCcccccCCcccccccccccCccCC
Q 026548 182 FFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC 237 (237)
Q Consensus 182 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (237)
|+.++.+|++--.--+ .++ .+...++.++|.. +..--.++||+|
T Consensus 166 FeelveKIi~tp~l~~----~~n-------~~~~~~i~~~p~~-~~~~~~g~~Cs~ 209 (209)
T KOG0080|consen 166 FEELVEKIIETPSLWE----EGN-------SSAGLDIASDPDG-EASAHQGGCCSC 209 (209)
T ss_pred HHHHHHHHhcCcchhh----ccC-------CccccccccCCCc-ccccccCCccCC
Confidence 9999998876432111 111 1223444443332 223446789998
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-38 Score=239.53 Aligned_cols=179 Identities=44% Similarity=0.791 Sum_probs=171.5
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR 99 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 99 (237)
|...++++.+||+++|++|+|||+|+.+|..+.+...+..|.++++..+.+.+++..+.+++|||+|+++|..+...|++
T Consensus 4 ~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr 83 (207)
T KOG0078|consen 4 MAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR 83 (207)
T ss_pred cccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh
Confidence 34448889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
+|+++++|||+++..+|+++..|+..+..+...++|+++|+||+|+...++++.+..+++|.++|+.++||||++|.||+
T Consensus 84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred hcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccc
Q 026548 180 TAFFRLLQEIYGAVSKKEL 198 (237)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~ 198 (237)
++|..|++.+.++..+.+.
T Consensus 164 eaF~~La~~i~~k~~~~~~ 182 (207)
T KOG0078|consen 164 EAFLSLARDILQKLEDAEL 182 (207)
T ss_pred HHHHHHHHHHHhhcchhhh
Confidence 9999999999998876543
No 4
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-39 Score=237.24 Aligned_cols=172 Identities=46% Similarity=0.769 Sum_probs=162.9
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...+||+|+|+.++|||||+.|+..+.|.....+|++..|..+.+.+++..+++.||||+|+++|..+...|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35789999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|||+++.+||..++.|+..+.+...+++.+.|++||+|+.+.+++..+++..++...+..++++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999887788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccc
Q 026548 186 LQEIYGAVSKKE 197 (237)
Q Consensus 186 ~~~i~~~~~~~~ 197 (237)
.+.+........
T Consensus 163 a~~lp~~~~~~~ 174 (200)
T KOG0092|consen 163 AEKLPCSDPQER 174 (200)
T ss_pred HHhccCcccccc
Confidence 998877666443
No 5
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-38 Score=238.51 Aligned_cols=217 Identities=59% Similarity=0.937 Sum_probs=192.1
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR 99 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 99 (237)
..+...++.+||+++|++++|||-|+.++..+.|...+.+|++.++....+.++++.++.+||||+|+++|+.....+++
T Consensus 6 ~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 6 DKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred CCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
++.++++|||++...+|+.+.+|+.+++.+.+.++++++|+||+||.+.+.+..++++.++.+.+..++++||.+..+++
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccccCCCccCCCCCCCCCcccccCCcccccccccccCccC
Q 026548 180 TAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 236 (237)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
.+|..++..|+....++-..........+....+.++.+.+.+..+.+...+..||+
T Consensus 166 ~aF~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~ 222 (222)
T KOG0087|consen 166 KAFERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS 222 (222)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence 999999999999998775554433222223344566666555555555555667774
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-37 Score=228.54 Aligned_cols=173 Identities=51% Similarity=0.856 Sum_probs=166.7
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
...+.+|++++|+.|+|||+|+.+++...|.+.+..|.++++..+.+++++..+++++|||+|++.|++....|++++-+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
+|+|||+++.++|..+..|+..++.+...++.++|++||+|+...+.+..++...||+++|..++++||+++.||+++|.
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999999999999999999999878999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc
Q 026548 184 RLLQEIYGAVSKK 196 (237)
Q Consensus 184 ~l~~~i~~~~~~~ 196 (237)
.....|+......
T Consensus 162 nta~~Iy~~~q~g 174 (216)
T KOG0098|consen 162 NTAKEIYRKIQDG 174 (216)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988743
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-37 Score=229.20 Aligned_cols=171 Identities=37% Similarity=0.660 Sum_probs=159.8
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
..-+..||+++|+.++||||||.+++.+.|+..|.+|+++++..+.+.+.+..+.++||||+|+++|+.+...|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34445999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
+|+|||+++..+|+...+|++.+....+. ++.+++|+||.||.+++++..++....++++++.|+++||+.|.||..+|
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 99999999999999999999999998875 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 026548 183 FRLLQEIYGAVS 194 (237)
Q Consensus 183 ~~l~~~i~~~~~ 194 (237)
..|...+.+...
T Consensus 178 rrIaa~l~~~~~ 189 (221)
T KOG0094|consen 178 RRIAAALPGMEV 189 (221)
T ss_pred HHHHHhccCccc
Confidence 887666655544
No 8
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=7.1e-37 Score=225.10 Aligned_cols=173 Identities=33% Similarity=0.627 Sum_probs=160.3
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
..+...+||+++|++|+|||||+++|...+|...+..|++.++..+.+.+++..+.++||||+|+++|.++...+++++|
T Consensus 4 ~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaD 83 (210)
T KOG0394|consen 4 LRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGAD 83 (210)
T ss_pred cCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCc
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC--CcCCCHHHHHHHHHHcC-CeEEEEcCCCC
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVD--MRAVSAEDAVEFAEDQG-LFFSEASALNG 175 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 175 (237)
.++++||++++.+|+.+..|.+++..... ...|+||++||+|+.+ .++++.+.++.++...| +||||+||+..
T Consensus 84 cCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 84 CCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred eEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence 99999999999999999999999887765 4589999999999865 37899999999999765 89999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhc
Q 026548 176 DNVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 176 ~gi~~~~~~l~~~i~~~~~~ 195 (237)
.+|+++|+.+.+.+++....
T Consensus 164 ~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 164 TNVDEAFEEIARRALANEDR 183 (210)
T ss_pred ccHHHHHHHHHHHHHhccch
Confidence 99999999999988877653
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.1e-35 Score=230.59 Aligned_cols=167 Identities=41% Similarity=0.755 Sum_probs=153.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+.|+++|..|+|||||+++|..+.+...+.++.+.++..+.+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46999999999999999999999998888899998988888999998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
|++++.+++.+..|+..+......++|++||+||+|+...+++..+++.++++++ ++.|++|||++|.||+++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887776568999999999999877888888899999885 788999999999999999999999
Q ss_pred HHHHhhhc
Q 026548 188 EIYGAVSK 195 (237)
Q Consensus 188 ~i~~~~~~ 195 (237)
.+.+....
T Consensus 161 ~~~~~~~~ 168 (202)
T cd04120 161 DILKKMPL 168 (202)
T ss_pred HHHHhCcc
Confidence 98876543
No 10
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=5.5e-35 Score=231.27 Aligned_cols=173 Identities=65% Similarity=1.027 Sum_probs=158.3
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
.++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 44679999999999999999999999998878889999998888899999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876668999999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHhhhccc
Q 026548 185 LLQEIYGAVSKKE 197 (237)
Q Consensus 185 l~~~i~~~~~~~~ 197 (237)
+++.+.+....+.
T Consensus 169 l~~~i~~~~~~~~ 181 (216)
T PLN03110 169 ILLEIYHIISKKA 181 (216)
T ss_pred HHHHHHHHhhccc
Confidence 9999988755433
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=6.5e-35 Score=225.75 Aligned_cols=169 Identities=36% Similarity=0.644 Sum_probs=155.5
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
.+..+||+|+|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999999988877778888888878888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
|+|||++++.+++.+..|+..+.... .++|++||+||.|+.+.+.+..++++++++.++++|++|||++|.||+++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997765 58999999999999887788899999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 026548 185 LLQEIYGAVS 194 (237)
Q Consensus 185 l~~~i~~~~~ 194 (237)
+++.+..+-.
T Consensus 162 l~~~i~~~~~ 171 (189)
T cd04121 162 LARIVLMRHG 171 (189)
T ss_pred HHHHHHHhcC
Confidence 9998876444
No 12
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-34 Score=227.23 Aligned_cols=171 Identities=35% Similarity=0.638 Sum_probs=152.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.++ +..+.+.||||||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888998888887888887 7788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHA----DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~ 182 (237)
||++++.+++.+..|+..+.... ..++|++||+||+|+...+....+++.++++..+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876542 2578999999999997666778889999999998 689999999999999999
Q ss_pred HHHHHHHHHhhhccccc
Q 026548 183 FRLLQEIYGAVSKKELE 199 (237)
Q Consensus 183 ~~l~~~i~~~~~~~~~~ 199 (237)
++|++.+.+........
T Consensus 161 ~~l~~~l~~~~~~~~~~ 177 (201)
T cd04107 161 RFLVKNILANDKNLQQA 177 (201)
T ss_pred HHHHHHHHHhchhhHhh
Confidence 99999998776554433
No 13
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-35 Score=209.87 Aligned_cols=180 Identities=41% Similarity=0.714 Sum_probs=169.8
Q ss_pred hcccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHh
Q 026548 17 QENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSA 96 (237)
Q Consensus 17 ~~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 96 (237)
+....++..++.+|++++|+..+|||||+.++.+..+.+.+.+|.++++..+.+.-....+.+++|||+|++.|+.+...
T Consensus 10 ~~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTa 89 (193)
T KOG0093|consen 10 SKDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTA 89 (193)
T ss_pred ccccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHH
Confidence 34456678889999999999999999999999999999999999999999998888888899999999999999999999
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548 97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD 176 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (237)
++++++++|++||+++.+++..+..|.-++..++-.+.|+|+++||||+.+++.++.+..+.++.++|..||++||+.+.
T Consensus 90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Ni 169 (193)
T KOG0093|consen 90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENI 169 (193)
T ss_pred HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcc
Q 026548 177 NVDTAFFRLLQEIYGAVSKK 196 (237)
Q Consensus 177 gi~~~~~~l~~~i~~~~~~~ 196 (237)
++.++|+.++..|-+.+..+
T Consensus 170 nVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 170 NVKQVFERLVDIICDKMSES 189 (193)
T ss_pred cHHHHHHHHHHHHHHHhhhh
Confidence 99999999999998877643
No 14
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-33 Score=219.39 Aligned_cols=169 Identities=45% Similarity=0.749 Sum_probs=153.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988778888888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
|++++.++..+..|+..+.......+|++|++||.|+.+...+..+++..++...+++++++||+++.|++++|.+|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888765678999999999998777778888888999899999999999999999999999999
Q ss_pred HHHhhhccc
Q 026548 189 IYGAVSKKE 197 (237)
Q Consensus 189 i~~~~~~~~ 197 (237)
+..+....+
T Consensus 161 ~~~~~~~~~ 169 (188)
T cd04125 161 IIKRLEEQE 169 (188)
T ss_pred HHHHhhcCc
Confidence 987655443
No 15
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=6.6e-34 Score=225.06 Aligned_cols=164 Identities=36% Similarity=0.600 Sum_probs=149.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC-EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889999888888888864 568899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..++..+++..++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999887653 35789999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHh
Q 026548 185 LLQEIYGA 192 (237)
Q Consensus 185 l~~~i~~~ 192 (237)
|++.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998875
No 16
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=209.08 Aligned_cols=170 Identities=46% Similarity=0.778 Sum_probs=161.6
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
...++.++.+++|++|+|||+|+.++..+.|...|..|++.++..+.+.++|..++++||||+|++.|+.+...++++.+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
++++|||+++.++|.++.+|++.+...+ +.+|-++|+||.|.++.+.+..++++.|+...|+.+|++|++...+++..|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 9999999999999999999999999988 489999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 026548 183 FRLLQEIYGAV 193 (237)
Q Consensus 183 ~~l~~~i~~~~ 193 (237)
.-|.+.++...
T Consensus 162 ~cit~qvl~~k 172 (198)
T KOG0079|consen 162 HCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHH
Confidence 99998877665
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-33 Score=222.98 Aligned_cols=171 Identities=23% Similarity=0.407 Sum_probs=151.8
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
.....+||+|+|+.|+|||+|+++|..+.+...+.++++..+. ..+.+++..+.+.||||+|++.|..++..+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 3345789999999999999999999999999888899876664 467889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcCC-eEEE
Q 026548 104 AVVVYDITKRQSFDH-VARWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGL-FFSE 169 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 169 (237)
+|+|||++++.+|+. +..|+..+.... .+.|++||+||+|+.. .+.+..+++.++++++++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 489999988765 5789999999999864 256889999999999998 6999
Q ss_pred EcCCCCC-CHHHHHHHHHHHHHHhhhcc
Q 026548 170 ASALNGD-NVDTAFFRLLQEIYGAVSKK 196 (237)
Q Consensus 170 ~Sa~~~~-gi~~~~~~l~~~i~~~~~~~ 196 (237)
|||++|. ||+++|..++..+++.....
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~~~~~ 194 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNKLSPP 194 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHhcccc
Confidence 9999997 89999999999988765543
No 18
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=220.23 Aligned_cols=170 Identities=51% Similarity=0.870 Sum_probs=156.0
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
.++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34679999999999999999999999988888888888888888888999888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
|+|||++++.++..+..|+..+.......+|+++++||+|+...+.+..++..++++.++++++++||+++.|++++|.+
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887665568999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 026548 185 LLQEIYGAVS 194 (237)
Q Consensus 185 l~~~i~~~~~ 194 (237)
+++.++++..
T Consensus 163 l~~~~~~~~~ 172 (210)
T PLN03108 163 TAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHHhh
Confidence 9999987765
No 19
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.7e-33 Score=213.92 Aligned_cols=164 Identities=51% Similarity=0.892 Sum_probs=151.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999998888888888888878888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++...++++++|||++|.|++++|..+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887776677999999999999887778888999999999999999999999999999999998
Q ss_pred HHHH
Q 026548 188 EIYG 191 (237)
Q Consensus 188 ~i~~ 191 (237)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8865
No 20
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-34 Score=205.76 Aligned_cols=181 Identities=48% Similarity=0.801 Sum_probs=171.9
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR 99 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 99 (237)
|..+.+++.+|++++|+.|+|||.|+++++..++......++++++..+.+.+.++.++++||||+|+++|++..+.+++
T Consensus 1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYR 80 (214)
T KOG0086|consen 1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 80 (214)
T ss_pred CcchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
++-+.++|||+++.++|+.+..|+...+.....++-+++++||.|+...++++..++..|+.+..+.++++|+++|.+++
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccc
Q 026548 180 TAFFRLLQEIYGAVSKKELEC 200 (237)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~ 200 (237)
++|-...+.|+.+....|..+
T Consensus 161 EaFl~c~~tIl~kIE~GElDP 181 (214)
T KOG0086|consen 161 EAFLKCARTILNKIESGELDP 181 (214)
T ss_pred HHHHHHHHHHHHHHhhcCCCH
Confidence 999999999999988766553
No 21
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.8e-33 Score=213.03 Aligned_cols=166 Identities=47% Similarity=0.842 Sum_probs=152.8
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35789999999999999999999999998888899888888788888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|||++++.++..+..|+..+......++|++||+||+|+.+.+....+++.+++..++++++++||++|.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887765689999999999998777778888889999999999999999999999999999
Q ss_pred HHHHHH
Q 026548 186 LQEIYG 191 (237)
Q Consensus 186 ~~~i~~ 191 (237)
++.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998865
No 22
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-34 Score=204.51 Aligned_cols=208 Identities=38% Similarity=0.651 Sum_probs=178.6
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
++...+||+++|..|+|||.|++++..+-|++....++++++-.+.+.+++..++++||||+|+++|++....+++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
+|+|||++-..+|+-+..|+.++..+...++..|+|+||+|+.+.++++.....+|++.....|+++||+..++++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999999888888999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccCCCccCCCCCCCCCcccccCCcccccccccccCccC
Q 026548 184 RLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 236 (237)
Q Consensus 184 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
.++-.+.......+.........+...-.|.++.+.+-.+ -+-..||.
T Consensus 163 ~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~aq-----t~~~~cc~ 210 (213)
T KOG0095|consen 163 DLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYAQ-----TQLLTCCN 210 (213)
T ss_pred HHHHHHHHHHHhccchhhccccCccccCCCCcccchhHHH-----HHHhcccc
Confidence 8887766655544444333332222334466776655433 23345774
No 23
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.2e-33 Score=218.34 Aligned_cols=170 Identities=48% Similarity=0.812 Sum_probs=153.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE-CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
.+||+|+|++|+|||||+++|.+..+...+.++.+.++..+.+.+ ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 579999999999999999999999988888888888888887777 4667889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
|||++++.+++.+..|+..+..... ..+|++||+||.|+...+.+..++..++++.++++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999876644 467889999999998777788888999999999999999999999999999999
Q ss_pred HHHHHHhhhccc
Q 026548 186 LQEIYGAVSKKE 197 (237)
Q Consensus 186 ~~~i~~~~~~~~ 197 (237)
++.++++....+
T Consensus 162 ~~~~~~~~~~~~ 173 (211)
T cd04111 162 TQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHhhcCC
Confidence 999988876554
No 24
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9e-35 Score=208.85 Aligned_cols=208 Identities=32% Similarity=0.552 Sum_probs=182.1
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
....+||+++|..=+|||||+-+++.++|.....+|....+..+.+.+.+....+.||||+|+++|-.+-..|+++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 34579999999999999999999999999888888877788888888988889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
++|||+++.++|+.++.|..+++...+..+-++||+||+|+.+++.++.+++..+++..|+.|+++||+.+.||.++|+.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES 169 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccCCCccCCCCCCCCCcccccCCcccccccccccCccC
Q 026548 185 LLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 236 (237)
Q Consensus 185 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
|...+.+...-++...++.+.++|....+..+ .+..-+-..-.++||+
T Consensus 170 Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~----iD~e~~a~~sg~~CC~ 217 (218)
T KOG0088|consen 170 LTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRL----IDNEAEAERSGKRCCR 217 (218)
T ss_pred HHHHHHHHhhhcccccCCcCCCCCCcccchhc----cCCCcccccccCCccC
Confidence 99999999998888888877664443333222 2222133445566996
No 25
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.1e-34 Score=205.95 Aligned_cols=179 Identities=45% Similarity=0.770 Sum_probs=163.9
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE-CCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
...+.++++|+|+.-+|||+|++.+..++++...+||+++++..+.+.+ +|..++++||||+|+++|++.+..+++++-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 4457899999999999999999999999999999999999998887776 788899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
++++|||+++..+|+.+..|+.+...+.. .++-+.+|++|+|+...++++.+++.+++..+|+.|+++|+++|.||++
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 99999999999999999999999777665 3455679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccCC
Q 026548 181 AFFRLLQEIYGAVSKKELECGN 202 (237)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~ 202 (237)
+|..|.+.++..+...+.+...
T Consensus 164 AF~mlaqeIf~~i~qGeik~ed 185 (213)
T KOG0091|consen 164 AFDMLAQEIFQAIQQGEIKLED 185 (213)
T ss_pred HHHHHHHHHHHHHhcCceeeee
Confidence 9999999999998876555433
No 26
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.3e-32 Score=215.09 Aligned_cols=168 Identities=45% Similarity=0.741 Sum_probs=152.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++|
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999988778888888888888888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|||++++.+++.+..|++.+.... ...|++||+||+|+.....+..++..+++...+++++++||++|.||+++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 9999999999999999999987765 578999999999998766777888889999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 026548 186 LQEIYGAVS 194 (237)
Q Consensus 186 ~~~i~~~~~ 194 (237)
.+.++....
T Consensus 163 ~~~~~~~~~ 171 (199)
T cd04110 163 TELVLRAKK 171 (199)
T ss_pred HHHHHHhhh
Confidence 998876533
No 27
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=5.2e-33 Score=214.06 Aligned_cols=162 Identities=28% Similarity=0.491 Sum_probs=146.1
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 468999999999999999999999999888888887655 4567889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcCC-eEEEEcC
Q 026548 107 VYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGL-FFSEASA 172 (237)
Q Consensus 107 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa 172 (237)
|||++++.+++.+ ..|+..+.... .+.|++||+||+|+.. .+.+..+++.++++++++ +|++|||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 9999999999997 79999988766 5799999999999854 246889999999999996 8999999
Q ss_pred CCCCC-HHHHHHHHHHHHH
Q 026548 173 LNGDN-VDTAFFRLLQEIY 190 (237)
Q Consensus 173 ~~~~g-i~~~~~~l~~~i~ 190 (237)
++|.| |+++|..+++.++
T Consensus 162 k~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 162 LQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 99998 9999999988654
No 28
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=6.3e-33 Score=218.99 Aligned_cols=165 Identities=32% Similarity=0.493 Sum_probs=142.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|.+|+|||||+++|..+.+.. +.++.+.++....+ ..+.+.||||+|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 45777665544332 3577899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------------------CcCCCHHHHHHHHHHcC-----
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD-------------------MRAVSAEDAVEFAEDQG----- 164 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 164 (237)
|++++.+++.+..|+..+......++|++||+||+|+.. .+.+..+++.+++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988887765556799999999999865 56788899999999876
Q ss_pred ---------CeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcccc
Q 026548 165 ---------LFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198 (237)
Q Consensus 165 ---------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~ 198 (237)
++|++|||++|.||+++|..+++.+++.......
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~ 198 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA 198 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 6899999999999999999999998877765543
No 29
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=6.7e-33 Score=215.32 Aligned_cols=165 Identities=34% Similarity=0.549 Sum_probs=145.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999988777777776444 3456678888889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 110 ITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
+++..+++.+..|+..+..... .++|++||+||+|+...+.+..++..+++...+++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999998876542 4789999999999977777778888889998999999999999999999999999
Q ss_pred HHHHHhhhc
Q 026548 187 QEIYGAVSK 195 (237)
Q Consensus 187 ~~i~~~~~~ 195 (237)
+.+.++...
T Consensus 160 ~~l~~~~~~ 168 (190)
T cd04144 160 RALRQQRQG 168 (190)
T ss_pred HHHHHhhcc
Confidence 988755553
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=7.5e-33 Score=211.70 Aligned_cols=164 Identities=29% Similarity=0.452 Sum_probs=147.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.+||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998877778876444 45577888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
||++++.+++.+..|+..+..... .++|++||+||+|+.+.+.+..++..++++..+++|++|||++|.||+++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999999888776543 5799999999999987778888899999999999999999999999999999999
Q ss_pred HHHHHh
Q 026548 187 QEIYGA 192 (237)
Q Consensus 187 ~~i~~~ 192 (237)
+.+...
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 887763
No 31
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-32 Score=213.75 Aligned_cols=165 Identities=42% Similarity=0.747 Sum_probs=148.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
+||+|+|++|+|||||+++|....+.. .+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998764 5667777777777788888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
||+++..+++.+..|+..+......++|++||+||+|+...+.+..++...++..++++|+++||++|.|++++|.+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876668999999999999766677778888999999999999999999999999999999
Q ss_pred HHHHhh
Q 026548 188 EIYGAV 193 (237)
Q Consensus 188 ~i~~~~ 193 (237)
.+.+..
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 987664
No 32
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.3e-32 Score=211.74 Aligned_cols=167 Identities=42% Similarity=0.728 Sum_probs=150.0
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC----------CEEEEEEEEeCCCcchhchhhH
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN----------GKIIKAQIWDTAGQERYRAVTS 95 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~ 95 (237)
++.+||+++|++|+|||||+++|....+...+.++.+.++....+.+. +..+.+.||||||++.+..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 357999999999999999999999999988888888888776666554 4568899999999999999999
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC
Q 026548 96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN 174 (237)
Q Consensus 96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 174 (237)
.+++++|++|+|||++++.++..+..|+..+..... .+.|++||+||+|+.+.+.+..+++.+++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 999999999999999999999999999999876543 5789999999999987777888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 026548 175 GDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 175 ~~gi~~~~~~l~~~i~~~ 192 (237)
|.|++++|++|++.++++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999988765
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.9e-32 Score=208.10 Aligned_cols=163 Identities=44% Similarity=0.745 Sum_probs=148.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 69999999999999999999999988888888887777777777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
|++++.+++.+..|+..+........|++||+||+|+...+....++..+++..++++++++||+++.|++++|+++.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877665679999999999998777777888888999999999999999999999999999887
Q ss_pred HHH
Q 026548 189 IYG 191 (237)
Q Consensus 189 i~~ 191 (237)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 654
No 34
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=8.7e-33 Score=211.61 Aligned_cols=159 Identities=33% Similarity=0.576 Sum_probs=143.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888888887655 456778888999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCc----------CCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 026548 109 DITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDMR----------AVSAEDAVEFAEDQGL-FFSEASALNGD 176 (237)
Q Consensus 109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 176 (237)
|++++.+|+.+ ..|+..+.... .++|++||+||+|+.+.+ .+..+++.++++..++ .|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987765 579999999999996532 4788899999999998 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 026548 177 NVDTAFFRLLQEI 189 (237)
Q Consensus 177 gi~~~~~~l~~~i 189 (237)
||+++|+.+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999875
No 35
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=213.43 Aligned_cols=166 Identities=37% Similarity=0.566 Sum_probs=148.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.+||+++|++|+|||||+++|..+.+...+.++.+..+ .+.+.+++..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 58999999999999999999999998877777776555 46677888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
||++++.+++.+..|+..+..... .++|++||+||+|+.+.+.+..+++.+++..+++++++|||++|.|++++|.+|+
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999998877643 5799999999999977667777788888888899999999999999999999999
Q ss_pred HHHHHhhh
Q 026548 187 QEIYGAVS 194 (237)
Q Consensus 187 ~~i~~~~~ 194 (237)
+.+.+..+
T Consensus 164 ~~l~~~~~ 171 (189)
T PTZ00369 164 REIRKYLK 171 (189)
T ss_pred HHHHHHhh
Confidence 98876544
No 36
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2e-32 Score=208.03 Aligned_cols=164 Identities=48% Similarity=0.835 Sum_probs=150.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 57999999999999999999999998888888888888888888888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
||+++++++..+..|+..+......+.|+++++||.|+.....+..+++.+++..++++++++||++|.|++++|.+|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999988776567999999999999777777888899999999999999999999999999999998
Q ss_pred HHHH
Q 026548 188 EIYG 191 (237)
Q Consensus 188 ~i~~ 191 (237)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd01869 162 EIKK 165 (166)
T ss_pred HHHh
Confidence 8753
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.6e-32 Score=207.64 Aligned_cols=160 Identities=43% Similarity=0.766 Sum_probs=148.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888889888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
|++++.+++.+..|+..+......++|+++|+||.|+.+.+.+..+++..+++.++++|++|||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887765679999999999998777788889999999999999999999999999999999864
No 38
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.1e-32 Score=206.91 Aligned_cols=161 Identities=41% Similarity=0.752 Sum_probs=153.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
||+|+|++++|||||+++|.++.+...+.++.+.+.....+.+++..+.+.|||++|++.+..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999898999899999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 110 ITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
++++.+++.+..|+..+......++|++|++||.|+.+.+.+..++++++++.++++|++||++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998866799999999999988889999999999999999999999999999999999999987
Q ss_pred H
Q 026548 190 Y 190 (237)
Q Consensus 190 ~ 190 (237)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.7e-32 Score=207.05 Aligned_cols=162 Identities=32% Similarity=0.639 Sum_probs=148.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899998888888888898999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD-----SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+......++...++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999877653 4699999999999976566778888888888899999999999999999999
Q ss_pred HHHHHHH
Q 026548 184 RLLQEIY 190 (237)
Q Consensus 184 ~l~~~i~ 190 (237)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 40
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-32 Score=194.33 Aligned_cols=190 Identities=46% Similarity=0.797 Sum_probs=176.0
Q ss_pred CCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcC
Q 026548 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG 100 (237)
Q Consensus 21 ~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 100 (237)
.+.+..+.+|.+++|+-|+|||.|+..+...+|...-..++++++..+.+.+.|..+++++|||+|+++|+...+.++++
T Consensus 4 ~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrg 83 (215)
T KOG0097|consen 4 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 83 (215)
T ss_pred CccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 45678889999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
+-+.++|||++.+.++..+..|+...+....++..+++++||.|+...+.+..+++++|+.+.|..++++||++|.++++
T Consensus 84 aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nved 163 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVED 163 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence 99999999999999999999999998888878888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccCCCccCCCCC
Q 026548 181 AFFRLLQEIYGAVSKKELECGNGKVDGPPM 210 (237)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 210 (237)
+|-...++|+..............+...++
T Consensus 164 afle~akkiyqniqdgsldlnaaesgvq~k 193 (215)
T KOG0097|consen 164 AFLETAKKIYQNIQDGSLDLNAAESGVQHK 193 (215)
T ss_pred HHHHHHHHHHHhhhcCcccccchhccCcCC
Confidence 999999999999988766666555554444
No 41
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.8e-32 Score=210.56 Aligned_cols=160 Identities=26% Similarity=0.483 Sum_probs=143.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..+...+++++|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 68999999999999999999999998888888876654 56788899999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548 109 DITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGL-FFSEASALN 174 (237)
Q Consensus 109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 174 (237)
|++++.+++.+ ..|+..+.... .++|++||+||+|+.. .+.+..+++.++++++++ +|++|||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999996 79999988776 5799999999999854 245788999999999997 799999999
Q ss_pred CCC-HHHHHHHHHHHHH
Q 026548 175 GDN-VDTAFFRLLQEIY 190 (237)
Q Consensus 175 ~~g-i~~~~~~l~~~i~ 190 (237)
|.+ |+++|..+++..+
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999988654
No 42
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=5.4e-32 Score=206.17 Aligned_cols=166 Identities=51% Similarity=0.878 Sum_probs=152.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
+..+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46789999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|||++++.+++.+..|+..+......++|++||+||.|+.....+..+++..++...++.++++||+++.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887765689999999999998666778888889999999999999999999999999999
Q ss_pred HHHHHH
Q 026548 186 LQEIYG 191 (237)
Q Consensus 186 ~~~i~~ 191 (237)
++.+++
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988765
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=4.2e-32 Score=205.95 Aligned_cols=163 Identities=69% Similarity=1.088 Sum_probs=150.1
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999999888888998888888888889888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
|||++++.++..+..|+..+......++|++||+||.|+...+....++...++...+++++++||++|.|++++|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998887655799999999999987777788888999988899999999999999999999998
Q ss_pred HHH
Q 026548 187 QEI 189 (237)
Q Consensus 187 ~~i 189 (237)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 775
No 44
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=3.6e-32 Score=211.31 Aligned_cols=163 Identities=28% Similarity=0.513 Sum_probs=143.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.+||+++|+.|+|||||+.+|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 47999999999999999999999999888888887554 34567888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHcC-CeEEEEcCC
Q 026548 108 YDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQG-LFFSEASAL 173 (237)
Q Consensus 108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 173 (237)
||++++.+++.+. .|+..+.... .++|++||+||.|+.+.. .+..+++.++++.++ ++|++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 5888776654 579999999999986532 356778899999998 589999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 026548 174 NGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~i~~~ 192 (237)
+|.||+++|+++++.+...
T Consensus 161 ~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999887653
No 45
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.1e-31 Score=212.01 Aligned_cols=165 Identities=24% Similarity=0.446 Sum_probs=144.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|++|+|||||+++|..+.+...+.|+++..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 68999999999999999999999998888899876654 56778999999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548 109 DITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEASALN 174 (237)
Q Consensus 109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 174 (237)
|++++++++.+ ..|...+.... .++|++||+||+|+... ..+..+++..++++.++ .|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999998 46776665544 67999999999998542 13677889999999995 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHhhhc
Q 026548 175 GDN-VDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 175 ~~g-i~~~~~~l~~~i~~~~~~ 195 (237)
+.+ |+++|+.++...+.+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccCC
Confidence 984 999999999987776554
No 46
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=6.8e-32 Score=208.10 Aligned_cols=162 Identities=25% Similarity=0.484 Sum_probs=143.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|+.|+|||||+++|..+.+...+.++.+.++..+.+.+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899998888888889998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----CcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD-----MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
|++++.+++.+..|+..+........| ++|+||+|+.. ......++..++++..++++++|||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998876555567 67899999852 111224567788888999999999999999999999
Q ss_pred HHHHHHHH
Q 026548 184 RLLQEIYG 191 (237)
Q Consensus 184 ~l~~~i~~ 191 (237)
++.+.+++
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99998875
No 47
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-31 Score=203.73 Aligned_cols=162 Identities=46% Similarity=0.801 Sum_probs=147.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
+.+||+|+|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999998888787888888888888888888889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l 185 (237)
|||++++.+++.+..|+..+......++|+++|+||+|+...+....+++.++++..+. .++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876657899999999999987777778888899998886 58999999999999999998
Q ss_pred HHH
Q 026548 186 LQE 188 (237)
Q Consensus 186 ~~~ 188 (237)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 865
No 48
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=8.2e-32 Score=203.71 Aligned_cols=160 Identities=34% Similarity=0.541 Sum_probs=141.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.||||||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 6999999999999999999999988777777765 445567778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
|++++.+++.+..|+..+..... .++|++||+||+|+...+.+..++...+++.++++++++||++|.|++++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999999877643 57999999999999766667777788888888899999999999999999999987
Q ss_pred HH
Q 026548 188 EI 189 (237)
Q Consensus 188 ~i 189 (237)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 49
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.9e-31 Score=201.78 Aligned_cols=164 Identities=56% Similarity=0.911 Sum_probs=150.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888788888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
|++++.+++.+..|+..+......++|+++++||+|+...+....+.+.+++...+++++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766689999999999987766778888999999999999999999999999999999998
Q ss_pred HHHh
Q 026548 189 IYGA 192 (237)
Q Consensus 189 i~~~ 192 (237)
+.++
T Consensus 161 ~~~~ 164 (164)
T smart00175 161 ILKR 164 (164)
T ss_pred HhhC
Confidence 8653
No 50
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.8e-31 Score=201.67 Aligned_cols=160 Identities=52% Similarity=0.888 Sum_probs=147.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
|++++.++..+..|+..+......++|++|++||.|+........+++..++...++.++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877766789999999999998777778888999999999999999999999999999999875
No 51
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=4.2e-31 Score=205.61 Aligned_cols=165 Identities=35% Similarity=0.667 Sum_probs=145.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
+||+|+|++|+|||||+++|+.+.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998874 5678887777778888999989999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----cCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM----RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
||++++.+++.+..|+..+.... .++|+++|+||+|+... +.+..+++.+++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999887654 47999999999998532 34556678888888899999999999999999999
Q ss_pred HHHHHHHHhhh
Q 026548 184 RLLQEIYGAVS 194 (237)
Q Consensus 184 ~l~~~i~~~~~ 194 (237)
++++.+.++..
T Consensus 160 ~i~~~~~~~~~ 170 (193)
T cd04118 160 KVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHhcc
Confidence 99998876553
No 52
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.6e-31 Score=204.88 Aligned_cols=160 Identities=29% Similarity=0.475 Sum_probs=140.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
++||+|+|++|+|||||+++|..+.+...+.|+.+..+. ..+.+++..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998888888876554 4567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcC-CeEEEEcCC
Q 026548 108 YDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQG-LFFSEASAL 173 (237)
Q Consensus 108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 173 (237)
||++++.+++.+. .|+..+.... .++|++||+||+|+... +.+..+++.++++..+ +.|++|||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999996 5888887654 57999999999998543 4567788888998887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 026548 174 NGDNVDTAFFRLLQEI 189 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~i 189 (237)
+|.|++++|+.+++..
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988753
No 53
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=4e-31 Score=201.74 Aligned_cols=162 Identities=38% Similarity=0.688 Sum_probs=144.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888999888888888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcC--CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRA--VSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
++++++++.+..|+..+..... ...|+++|+||.|+..... ...++...++.+++.+++++||++|.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999998765432 4578999999999865433 345667788888899999999999999999999999
Q ss_pred HHHHH
Q 026548 187 QEIYG 191 (237)
Q Consensus 187 ~~i~~ 191 (237)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
No 54
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=202.91 Aligned_cols=174 Identities=40% Similarity=0.695 Sum_probs=160.7
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC---------CEEEEEEEEeCCCcchhch
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN---------GKIIKAQIWDTAGQERYRA 92 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~ 92 (237)
...+++.+|.+.+|+.|+|||||+.++.+++|.....+++++++..+.+.++ +..+.++||||+|+++|++
T Consensus 3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence 3467788999999999999999999999999999999999999998887773 3457899999999999999
Q ss_pred hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEc
Q 026548 93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 171 (237)
+...|++.+-+++++||+++.++|-+++.|+.++..+.- .+..+|+++||+|+.+.+.++.+++.+++.++++|||++|
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 999999999999999999999999999999999887665 5667999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhc
Q 026548 172 ALNGDNVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 172 a~~~~gi~~~~~~l~~~i~~~~~~ 195 (237)
|-+|.+|+++.+.|...+++++..
T Consensus 163 A~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988863
No 55
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.9e-31 Score=201.23 Aligned_cols=161 Identities=33% Similarity=0.543 Sum_probs=142.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888777777776544 456777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
|+++..+++.+..|+..+..... .+.|++||+||+|+........++..++++.++++++++||++|.|++++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999999876543 67999999999999876667777788888889999999999999999999999987
Q ss_pred HHH
Q 026548 188 EIY 190 (237)
Q Consensus 188 ~i~ 190 (237)
.+.
T Consensus 161 ~l~ 163 (164)
T cd04175 161 QIN 163 (164)
T ss_pred Hhh
Confidence 653
No 56
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.6e-31 Score=204.99 Aligned_cols=166 Identities=30% Similarity=0.474 Sum_probs=141.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
+||+|+|++|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999887777777666543 34554 6778899999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----cCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHH
Q 026548 108 YDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM----RAVSAEDAVEFAEDQGL-FFSEASALNGDNVDTA 181 (237)
Q Consensus 108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~ 181 (237)
||++++.+++.+. .|+..+.... .++|++||+||.|+... +.+..+++.+++...++ ++++|||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999985 5887776544 57999999999998653 24567888899999998 8999999999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 026548 182 FFRLLQEIYGAVSKK 196 (237)
Q Consensus 182 ~~~l~~~i~~~~~~~ 196 (237)
|+.+++.+.....+.
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999887665543
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.9e-31 Score=200.55 Aligned_cols=159 Identities=36% Similarity=0.628 Sum_probs=144.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC--CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999999888888888888877777776 777899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
|||++++++++.+..|+..+.... .++|+++|+||+|+.....+..+++.++++..+++++++|++++.|++++|.+|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999987655 5799999999999977777778889999999999999999999999999999887
Q ss_pred HH
Q 026548 187 QE 188 (237)
Q Consensus 187 ~~ 188 (237)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 54
No 58
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3.6e-31 Score=209.74 Aligned_cols=164 Identities=32% Similarity=0.541 Sum_probs=146.7
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999998888899988888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|||++++.++..+..|+..+.... .++|++||+||+|+.. +.+..+.. +++...++.|++|||++|.|++++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999988765 5799999999999854 33344444 7778888999999999999999999999
Q ss_pred HHHHHHh
Q 026548 186 LQEIYGA 192 (237)
Q Consensus 186 ~~~i~~~ 192 (237)
++.+++.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9988654
No 59
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.6e-30 Score=205.16 Aligned_cols=167 Identities=41% Similarity=0.706 Sum_probs=144.9
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
....+||+|+|++|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 345689999999999999999999998764 4567777778777888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHH-HHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 105 VVVYDITKRQSFDHVAR-WVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~-~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
|+|||++++++++.+.. |...+..... .+.|++||+||+|+.....+..++...++...++.|+++||+++.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999875 5555544332 568999999999998766777788888899999999999999999999999
Q ss_pred HHHHHHHHHh
Q 026548 183 FRLLQEIYGA 192 (237)
Q Consensus 183 ~~l~~~i~~~ 192 (237)
++|.+.+.+.
T Consensus 170 ~~l~~~~~~~ 179 (211)
T PLN03118 170 EELALKIMEV 179 (211)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 60
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=8e-31 Score=199.90 Aligned_cols=162 Identities=35% Similarity=0.658 Sum_probs=145.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 45799999999999999999999999988877788888887788888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVDT 180 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 180 (237)
+|||++++.+++.+..|+..+..... .++|++||+||.|+. .+....+++.+++...+. +++++||++|.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 99999999999999999988766542 468999999999986 456678889999998884 799999999999999
Q ss_pred HHHHHHHH
Q 026548 181 AFFRLLQE 188 (237)
Q Consensus 181 ~~~~l~~~ 188 (237)
+|+++++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99998865
No 61
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=5.4e-31 Score=199.45 Aligned_cols=160 Identities=29% Similarity=0.511 Sum_probs=141.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|.+|+|||||++++..+.+...+.++.+ ++....+.+++..+.+.||||||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 6899999999999999999999998877767664 455667778888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
|++++.+++++..|+..+..... .++|++||+||+|+.....+..++...++...+++++++||+++.|++++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999998877643 67999999999999766666677788888888899999999999999999999886
Q ss_pred HH
Q 026548 188 EI 189 (237)
Q Consensus 188 ~i 189 (237)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 62
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=7.5e-31 Score=199.50 Aligned_cols=160 Identities=33% Similarity=0.608 Sum_probs=141.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888778888888887777777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
|++++.++..+..|+..+..... ++|+++|+||+|+.. .... ....+++...++.++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999988764 899999999999863 2333 34556777778899999999999999999999988
Q ss_pred HHH
Q 026548 189 IYG 191 (237)
Q Consensus 189 i~~ 191 (237)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
No 63
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1e-30 Score=199.54 Aligned_cols=162 Identities=41% Similarity=0.717 Sum_probs=146.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-hhhHhhhcCCcEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-AVTSAYYRGALGAVV 106 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~il 106 (237)
.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999999887788888888888888889988999999999999887 578888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC---CCCHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN---GDNVDTAF 182 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~~ 182 (237)
|||++++.++..+..|+..+..... .++|+++|+||+|+...+++..++..+++...+++|+++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 9999999999999999998877643 6799999999999987778888888899999999999999999 89999999
Q ss_pred HHHHHHH
Q 026548 183 FRLLQEI 189 (237)
Q Consensus 183 ~~l~~~i 189 (237)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9988765
No 64
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=8.4e-31 Score=198.53 Aligned_cols=161 Identities=39% Similarity=0.613 Sum_probs=141.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|++|+|||||+++|.+..+...+.++.. +.....+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999988777766665 334456677888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
|++++.+++.+..|+..+..... .+.|+++|+||+|+...+....+.+.+++...+++++++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888776543 57899999999999776667778888899989999999999999999999999988
Q ss_pred HHH
Q 026548 188 EIY 190 (237)
Q Consensus 188 ~i~ 190 (237)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 654
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.1e-30 Score=197.81 Aligned_cols=161 Identities=35% Similarity=0.541 Sum_probs=141.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.+||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999988776666666543 345567788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
||+++..+++.+..|+..+..... .++|++|++||+|+...+....++..+++...+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999998877543 5799999999999977666777788888888899999999999999999999998
Q ss_pred HHH
Q 026548 187 QEI 189 (237)
Q Consensus 187 ~~i 189 (237)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 66
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.2e-30 Score=196.93 Aligned_cols=160 Identities=41% Similarity=0.729 Sum_probs=146.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
.||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+++.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 38999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
|++++.+++.+..|+..+......+.|+++++||+|+........++...++...+++++++||+++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999876654579999999999997666777888888888889999999999999999999998875
No 67
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.98 E-value=1.6e-30 Score=196.73 Aligned_cols=160 Identities=32% Similarity=0.562 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|.+|+|||||+++|....+.+.+.++.+.+.....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988877777777777777778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
|++++.+++.+..|+..+.... .++|++||+||+|+... ..++..+++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987654 47999999999998532 2344566777788999999999999999999999988
Q ss_pred HHHh
Q 026548 189 IYGA 192 (237)
Q Consensus 189 i~~~ 192 (237)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8764
No 68
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.98 E-value=2.7e-30 Score=195.47 Aligned_cols=161 Identities=50% Similarity=0.848 Sum_probs=147.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|++|+|||||+++|.++.+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999988777788887787888888998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
|++++.++.....|+..+.......+|++|++||+|+........++...++...+++++++||++|.|+.++|++|++.
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999887765779999999999987666777888888899989999999999999999999999887
Q ss_pred H
Q 026548 189 I 189 (237)
Q Consensus 189 i 189 (237)
+
T Consensus 162 l 162 (163)
T cd01860 162 L 162 (163)
T ss_pred h
Confidence 5
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.98 E-value=2e-30 Score=195.62 Aligned_cols=159 Identities=34% Similarity=0.606 Sum_probs=139.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999999998777777766443 456677888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
|+++..+++.+..|+..+..... .++|++||+||+|+.. .....+++.+++...+++++++||++|.|++++|+++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999998877653 5799999999999865 345567788888888999999999999999999999987
Q ss_pred HH
Q 026548 188 EI 189 (237)
Q Consensus 188 ~i 189 (237)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 70
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.98 E-value=1.3e-30 Score=199.67 Aligned_cols=158 Identities=31% Similarity=0.503 Sum_probs=138.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|++|+|||||+.++..+.+...+.++... .....+.+++..+.+.||||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 68999999999999999999999998888787753 34456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548 109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEASALN 174 (237)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 174 (237)
|++++++++.+. .|+..+.... .++|++||+||+|+.+. +.+..+++.+++++++. .+++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 6888776654 57999999999998542 24778889999999984 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 026548 175 GDNVDTAFFRLLQE 188 (237)
Q Consensus 175 ~~gi~~~~~~l~~~ 188 (237)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999988764
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.98 E-value=2.3e-30 Score=196.59 Aligned_cols=158 Identities=30% Similarity=0.424 Sum_probs=138.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++++++.+...+.++.+..+ ...+..+...+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 6899999999999999999999998777777765443 445566777789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
|++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++..++..+++.+++|||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999888776532 579999999999997766777778888888889999999999999999999998
Q ss_pred HH
Q 026548 186 LQ 187 (237)
Q Consensus 186 ~~ 187 (237)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 74
No 72
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=2.5e-30 Score=200.67 Aligned_cols=161 Identities=29% Similarity=0.499 Sum_probs=139.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
||+|+|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.+..++..+++.+|++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 8999999999999999999999998877788766543 456678888899999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHcC-CeEEEEcCCCC
Q 026548 110 ITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQG-LFFSEASALNG 175 (237)
Q Consensus 110 ~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 175 (237)
++++.+++.+. .|+..+.... .+.|++||+||+|+.... .+..++..+++...+ ++|++|||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 99999999986 5888887654 579999999999986543 245667788888877 68999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 026548 176 DNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 176 ~gi~~~~~~l~~~i~~~ 192 (237)
.|++++|.+|++.+...
T Consensus 160 ~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 160 RGVNEAFTEAARVALNV 176 (189)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999888643
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=2.9e-30 Score=201.40 Aligned_cols=165 Identities=22% Similarity=0.262 Sum_probs=138.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYYRG 100 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 100 (237)
+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.||||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888887676666777888888999999999665422 12345789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 026548 101 ALGAVVVYDITKRQSFDHVARWVEELRAHA---DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-DQGLFFSEASALNGD 176 (237)
Q Consensus 101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 176 (237)
+|++|+|||++++.+++.+..|+..+.... ..++|++||+||+|+...+....++...++. .++++|++|||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999999887654 3679999999999997666666666766654 568999999999999
Q ss_pred CHHHHHHHHHHHHHHhh
Q 026548 177 NVDTAFFRLLQEIYGAV 193 (237)
Q Consensus 177 gi~~~~~~l~~~i~~~~ 193 (237)
|++++|+.+++.++.+-
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999998887443
No 74
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=1.3e-29 Score=193.25 Aligned_cols=165 Identities=36% Similarity=0.675 Sum_probs=146.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888788888888888888988899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~ 183 (237)
|++++.+++.+..|...+..... .++|+++|+||+|+........++...+++..+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999889887655442 379999999999997555666778888888887 7899999999999999999
Q ss_pred HHHHHHHHhh
Q 026548 184 RLLQEIYGAV 193 (237)
Q Consensus 184 ~l~~~i~~~~ 193 (237)
++.+.+++..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999888764
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=7.8e-30 Score=193.21 Aligned_cols=160 Identities=32% Similarity=0.565 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC--CCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN--EFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
+||+++|++|||||||+++|... .+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5667777888888777777664 56689999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|||++++.++..+..|+..+.... .++|+++|+||+|+....++.......+....+++++++||+++.|++++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887765 579999999999997766677767777778888999999999999999999999
Q ss_pred HHHH
Q 026548 186 LQEI 189 (237)
Q Consensus 186 ~~~i 189 (237)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 76
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=6.9e-30 Score=199.20 Aligned_cols=156 Identities=31% Similarity=0.572 Sum_probs=140.1
Q ss_pred EcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh
Q 026548 34 IGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR 113 (237)
Q Consensus 34 ~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 113 (237)
+|.+|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988878889988888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548 114 QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 114 ~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 192 (237)
.+++.+..|+..+.... .++|++||+||+|+.. +.+..+ ...++...++.|++|||++|.||+++|.+|++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 5899999999999854 334443 3467888899999999999999999999999988764
No 77
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=1.7e-29 Score=190.54 Aligned_cols=161 Identities=42% Similarity=0.718 Sum_probs=144.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|+++.+...+.++.+..+....+.+.+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777677766777777777888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
|++++.++..+..|+..+......++|+++++||+|+........++..+++...+++++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887765679999999999998766777778888888889999999999999999999999876
Q ss_pred H
Q 026548 189 I 189 (237)
Q Consensus 189 i 189 (237)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 78
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=8.1e-30 Score=195.01 Aligned_cols=159 Identities=30% Similarity=0.514 Sum_probs=138.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEEC
Q 026548 31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI 110 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 110 (237)
|+|+|++|+|||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999998877777765444 35567788888999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 026548 111 TKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQGL-FFSEASALNGD 176 (237)
Q Consensus 111 ~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 176 (237)
+++++++.+. .|+..+.... .++|++||+||+|+.... .+..+++.++++..+. .+++|||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 5888887655 589999999999986522 3677788889999986 89999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 026548 177 NVDTAFFRLLQEIYG 191 (237)
Q Consensus 177 gi~~~~~~l~~~i~~ 191 (237)
|++++|+.+++.++.
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987753
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=1.9e-29 Score=190.50 Aligned_cols=159 Identities=45% Similarity=0.815 Sum_probs=142.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788888887777778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
|++++.+++.+..|++.+..... .++|+++|+||+|+.. .....++..+++...+++++++|+++|.|++++|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999998877754 6899999999999873 355677888899999999999999999999999998876
Q ss_pred H
Q 026548 188 E 188 (237)
Q Consensus 188 ~ 188 (237)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 80
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=2.3e-29 Score=191.67 Aligned_cols=162 Identities=34% Similarity=0.557 Sum_probs=142.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|.+|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 589999999999999999999999877777776644 3566777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
|++++.+++.+..|...+..... .+.|+++++||.|+...+....++..++++.++ ++++++||+++.|++++|.+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998876443 579999999999997767777778888888888 7899999999999999999999
Q ss_pred HHHHH
Q 026548 187 QEIYG 191 (237)
Q Consensus 187 ~~i~~ 191 (237)
..++-
T Consensus 161 ~~~~~ 165 (168)
T cd04177 161 RQIIC 165 (168)
T ss_pred HHHhh
Confidence 87653
No 81
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.1e-29 Score=197.60 Aligned_cols=158 Identities=23% Similarity=0.380 Sum_probs=129.6
Q ss_pred eeeEEEEcCCCCcHHHHHH-HHhcCC-----CcCCCCCCcce-eEEEEE--------EEECCEEEEEEEEeCCCcchhch
Q 026548 28 VFKVVVIGDSAVGKSQILS-RFTKNE-----FFFDSKSTIGV-EFQTRT--------VTINGKIIKAQIWDTAGQERYRA 92 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~ 92 (237)
.+||+++|+.|+|||||+. ++.++. +...+.||++. +.+... ..+++..+.+.||||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 665543 34456677642 222222 256888999999999998753
Q ss_pred hhHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC-------------------CcCCC
Q 026548 93 VTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD-------------------MRAVS 152 (237)
Q Consensus 93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~-------------------~~~~~ 152 (237)
+...+++++|++|+|||++++.+++.+. .|+..+.... .++|++||+||+|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999996 5988887765 4789999999999863 36788
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 153 AEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
.+++++++++++++|++|||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998764
No 82
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.1e-29 Score=192.74 Aligned_cols=160 Identities=37% Similarity=0.572 Sum_probs=137.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch-hchhhHhhhcCCcEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER-YRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ilv~ 108 (237)
||+|+|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||++. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998887666666654333 45667788888999999999885 3455777899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC-CCHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHA--DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG-DNVDTAFFRL 185 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~~~~~l 185 (237)
|++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..+++.++++..+++|+++||+++ .|++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887754 357999999999999776777888888999999999999999999 5999999999
Q ss_pred HHHHH
Q 026548 186 LQEIY 190 (237)
Q Consensus 186 ~~~i~ 190 (237)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98765
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.2e-29 Score=193.50 Aligned_cols=163 Identities=23% Similarity=0.247 Sum_probs=141.1
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
.+.+||+++|++|+|||||+++|+++.+. ..+.+|.+..+....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35899999999999999999999999988 77888888887777788888888899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAFF 183 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~ 183 (237)
|+|||++++.+++.+..|+..+... .++|+++|+||+|+.+.......+..++++.+++. ++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999998888865432 37999999999998655444444566778888874 79999999999999999
Q ss_pred HHHHHHH
Q 026548 184 RLLQEIY 190 (237)
Q Consensus 184 ~l~~~i~ 190 (237)
.+++.++
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998765
No 84
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=2.8e-29 Score=201.84 Aligned_cols=160 Identities=27% Similarity=0.433 Sum_probs=139.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|++|+|||||+++|+.+.+...+.++.+ ++..+.+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998877777765 556677888898899999999999999988888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-cCCeEEEEcCCCCCCH
Q 026548 109 DITKRQSFDHVARWVEELRAH---------ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-QGLFFSEASALNGDNV 178 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi 178 (237)
|+++.++|+.+..|+..+... ...++|++||+||+|+...+++..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999999988654 124799999999999976667778888877664 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 026548 179 DTAFFRLLQEI 189 (237)
Q Consensus 179 ~~~~~~l~~~i 189 (237)
+++|++|+..+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998854
No 85
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.6e-29 Score=188.68 Aligned_cols=164 Identities=43% Similarity=0.763 Sum_probs=146.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+++|++|+|||||+++|..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34689999999999999999999988887777788887888888888888889999999999999998899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|||++++.+++.+..|+..+......++|+++|+||+|+...+++..+....+.+....+++++|+++|.|++++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999998877665679999999999998767777777778887778889999999999999999999
Q ss_pred HHHH
Q 026548 186 LQEI 189 (237)
Q Consensus 186 ~~~i 189 (237)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8764
No 86
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=2.8e-29 Score=189.24 Aligned_cols=153 Identities=22% Similarity=0.367 Sum_probs=130.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|+.|+|||||++++..+.+...+.++ ...+ ...+.+++..+.+.+|||+|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999998887665444 3333 46678889888999999999975 24678899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCcCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLV--DMRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
|++++.+|+.+..|+..+..... .++|+++|+||.|+. ..+.+..+++.++++.. ++.|++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999887754 578999999999984 35677888888898876 489999999999999999999
Q ss_pred HHHH
Q 026548 185 LLQE 188 (237)
Q Consensus 185 l~~~ 188 (237)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8764
No 87
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=4.8e-29 Score=186.89 Aligned_cols=158 Identities=54% Similarity=0.922 Sum_probs=145.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
|+++++++..+..|+..+........|++|++||+|+........++..+++...+++++++|++++.|++++|++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999998887656799999999999975566778889999999899999999999999999999876
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=4.8e-29 Score=197.86 Aligned_cols=165 Identities=30% Similarity=0.356 Sum_probs=140.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc-CCcEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR-GALGAVV 106 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~~il 106 (237)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+|||+|++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 48999999999999999999988876 55666665567777888888889999999999982 23345666 9999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..++..+++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998877543 579999999999997777777888888888889999999999999999999999
Q ss_pred HHHHHHhhhc
Q 026548 186 LQEIYGAVSK 195 (237)
Q Consensus 186 ~~~i~~~~~~ 195 (237)
++.+......
T Consensus 159 ~~~~~~~~~~ 168 (221)
T cd04148 159 VRQIRLRRDS 168 (221)
T ss_pred HHHHHhhhcc
Confidence 9988755544
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=6.8e-29 Score=189.95 Aligned_cols=157 Identities=29% Similarity=0.503 Sum_probs=136.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||++++..+.+...+.++. .+.....+.+++..+.+.+|||||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988877776665 4455566778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548 109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGL-FFSEASALN 174 (237)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 174 (237)
|++++.+++.+. .|+..+.... .++|+++++||.|+.. .+.+..+++..+++..+. .+++|||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999984 6888877543 4699999999999853 356678889999999987 799999999
Q ss_pred CCCHHHHHHHHHH
Q 026548 175 GDNVDTAFFRLLQ 187 (237)
Q Consensus 175 ~~gi~~~~~~l~~ 187 (237)
|.|++++|+.++.
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999987764
No 90
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=2.7e-31 Score=185.82 Aligned_cols=161 Identities=41% Similarity=0.729 Sum_probs=150.3
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEEC
Q 026548 32 VVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI 110 (237)
Q Consensus 32 ~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 110 (237)
.++|++++|||.|+-++.++.|.. ...+++++++..+.+.+++..+++++|||+|+++|++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 378999999999999988888765 4568999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 111 TKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 111 ~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
.+..+|++.+.|+.++.++....+.+.+++||+|+..++.+..++...+++.+++|++++||++|.+++-+|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998888999999999999888889999999999999999999999999999999998888776
Q ss_pred Hh
Q 026548 191 GA 192 (237)
Q Consensus 191 ~~ 192 (237)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 54
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=6.3e-29 Score=190.06 Aligned_cols=159 Identities=30% Similarity=0.473 Sum_probs=136.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|..+.+...+.++... .....+.+++..+.+.+|||||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999999987777666543 33446777888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548 109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEASALN 174 (237)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 174 (237)
|++++.+++.+. .|+..+... ..+.|++||+||+|+.+. ..+..+++..+++..+. ++++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999885 687777655 468999999999998542 25667788899999986 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 026548 175 GDNVDTAFFRLLQEI 189 (237)
Q Consensus 175 ~~gi~~~~~~l~~~i 189 (237)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2e-28 Score=185.10 Aligned_cols=162 Identities=36% Similarity=0.587 Sum_probs=141.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|....+...+.++.... ..+....++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 489999999999999999999998877766665543 3456677888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
|++++.++..+..|+..+..... .++|+++|+||+|+........+....++..++++++++||+++.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999998887643 57999999999999764555667778888888999999999999999999999988
Q ss_pred HHHH
Q 026548 188 EIYG 191 (237)
Q Consensus 188 ~i~~ 191 (237)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 7753
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=3.5e-28 Score=182.96 Aligned_cols=158 Identities=38% Similarity=0.580 Sum_probs=140.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
||+|+|++|+|||||+++|++..+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777666665 5556667778777899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
++++++++.+..|+..+..... ...|+++++||+|+........+.+..++...+++++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999999887765 689999999999998766777888999999989999999999999999999999875
No 94
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=6.8e-28 Score=186.09 Aligned_cols=167 Identities=23% Similarity=0.376 Sum_probs=133.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE-CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
.+||+++|++|||||||++++....+... .++.+.+.....+.+ ++..+.+.+|||||++.+..++..+++++|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 57999999999999999999998887644 466666655555544 3456789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH------cCCeEEEEcCCCCCCHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED------QGLFFSEASALNGDNVD 179 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~ 179 (237)
|||++++.+++.+..|+..+..... .+.|++||+||+|+.. ....++...+... .+++++++||+++.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 9999999999888888877665432 5799999999999864 3344444444321 12468899999999999
Q ss_pred HHHHHHHHHHHHhhhccc
Q 026548 180 TAFFRLLQEIYGAVSKKE 197 (237)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~ 197 (237)
++|++|.+.+.++.+..+
T Consensus 160 ~l~~~l~~~l~~~~~~~~ 177 (183)
T cd04152 160 EGLEKLYEMILKRRKMLR 177 (183)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999987776554
No 95
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=1.7e-27 Score=183.17 Aligned_cols=164 Identities=35% Similarity=0.521 Sum_probs=141.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
.||+|+|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..++..+|+++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999887766666654443 455667777788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
|+++..+++.+..|+..+..... .+.|+++++||+|+...+....++...++..++.+++++||+++.|+.++|+++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999888776543 57899999999999766666777778888888899999999999999999999998
Q ss_pred HHHHhh
Q 026548 188 EIYGAV 193 (237)
Q Consensus 188 ~i~~~~ 193 (237)
.+....
T Consensus 161 ~~~~~~ 166 (180)
T cd04137 161 EIEKVE 166 (180)
T ss_pred HHHHhc
Confidence 876554
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=2.4e-27 Score=181.50 Aligned_cols=159 Identities=28% Similarity=0.484 Sum_probs=134.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
.||+|+|++|+|||||+++|..+.+...+.++....+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 48999999999999999999999988777777765543 45677888889999999999999988888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548 109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEASALN 174 (237)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 174 (237)
|+++.++++.+. .|+..+.... .++|+++|+||+|+... ..+..++.++++...+. .+++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998885 5877776544 57999999999998542 23445677888888775 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 026548 175 GDNVDTAFFRLLQEI 189 (237)
Q Consensus 175 ~~gi~~~~~~l~~~i 189 (237)
|.|++++|.+|++.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 97
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=185.56 Aligned_cols=166 Identities=36% Similarity=0.532 Sum_probs=153.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
..||+++|.+|+|||+|+.++....|...|.|++. +.+.+.+.+++..+.+.|+||+|++.+..+...+++..|++++|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 57999999999999999999999999999999987 66778889999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
|++++..||+.+..++..+.+... ..+|+++|+||+|+...+.+..++++.++..++++|+|+||+.+.+++++|..|+
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~ 161 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV 161 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence 999999999999999999855444 6789999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 026548 187 QEIYGAVS 194 (237)
Q Consensus 187 ~~i~~~~~ 194 (237)
+.+.....
T Consensus 162 r~~~~~~~ 169 (196)
T KOG0395|consen 162 REIRLPRE 169 (196)
T ss_pred HHHHhhhc
Confidence 98876443
No 98
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=2e-27 Score=185.66 Aligned_cols=160 Identities=28% Similarity=0.449 Sum_probs=135.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
||+++|++|+|||||+++|+...+...+.++.. ......+.+.+..+.+.|||+||+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776666654 4455667778888899999999999999988899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CcCCCHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVD-MRAVSAEDAVEFAE-DQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
++++.+++.+..|+..+..... .++|++||+||+|+.. ...+..+...+... ..+.+++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988877654 5799999999999865 34455555554443 4567899999999999999999999
Q ss_pred HHHH
Q 026548 187 QEIY 190 (237)
Q Consensus 187 ~~i~ 190 (237)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8765
No 99
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=2.5e-27 Score=183.53 Aligned_cols=164 Identities=30% Similarity=0.513 Sum_probs=137.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
.||+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......+++.+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 4899999999999999999998887766666654443 345667888888999999999988877777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC----------CcCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 026548 109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD----------MRAVSAEDAVEFAEDQGL-FFSEASALNGD 176 (237)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 176 (237)
|+++.++++.+. .|+..+.... .++|++||+||+|+.. .+.+..++...+++..+. +|++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 6888887655 4699999999999853 234556778888999985 79999999999
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 026548 177 NVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 177 gi~~~~~~l~~~i~~~~~ 194 (237)
|++++|+++.+.++..++
T Consensus 160 ~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 160 GVDDVFEAATRAALLVRK 177 (187)
T ss_pred CHHHHHHHHHHHHhcccC
Confidence 999999999988765554
No 100
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=7e-28 Score=183.49 Aligned_cols=153 Identities=24% Similarity=0.409 Sum_probs=122.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.++|+++|++|+|||||+++|..+.+.. +.++.+.++. .+... .+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 5799999999999999999998877643 4566665543 33333 47899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----QGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~~ 181 (237)
||++++.+++.+..|+..+.... ..++|++||+||+|+.+ ....+++.++... ..+.++++||++|.|++++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence 99999999998888877765432 25689999999999865 3455666665431 2346899999999999999
Q ss_pred HHHHHH
Q 026548 182 FFRLLQ 187 (237)
Q Consensus 182 ~~~l~~ 187 (237)
|++|.+
T Consensus 162 ~~~l~~ 167 (168)
T cd04149 162 LTWLSS 167 (168)
T ss_pred HHHHhc
Confidence 999864
No 101
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=1.8e-27 Score=181.43 Aligned_cols=156 Identities=24% Similarity=0.413 Sum_probs=126.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
||+++|.+|+|||||+++|.+..+.. +.+|.+..+. .+... .+.+.+|||||++.+...+..+++.+|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987643 5566665543 33344 3788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHH
Q 026548 110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG------LFFSEASALNGDNVDTAF 182 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~ 182 (237)
++++.+++.+..|+..+..... .+.|++|++||.|+.. ....+++.+++...+ +.+++|||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 9999999999999888765432 4689999999999864 456666766654222 258899999999999999
Q ss_pred HHHHHHHHHh
Q 026548 183 FRLLQEIYGA 192 (237)
Q Consensus 183 ~~l~~~i~~~ 192 (237)
++|.+.+.+.
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998876553
No 102
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=6.6e-27 Score=185.06 Aligned_cols=167 Identities=29% Similarity=0.503 Sum_probs=145.3
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
......+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34455689999999999999999999888888888899998888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
++++|||+++..++..+..|+..+.... .++|+++++||+|+... .... ....++...++.++++|+++|.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999987665 57999999999998542 3333 3346777888899999999999999999
Q ss_pred HHHHHHHHHh
Q 026548 183 FRLLQEIYGA 192 (237)
Q Consensus 183 ~~l~~~i~~~ 192 (237)
.+|++.++..
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999988754
No 103
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.6e-27 Score=182.42 Aligned_cols=159 Identities=20% Similarity=0.354 Sum_probs=123.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..+||+++|.+|||||||+++|..+.+. .+.++.+.++. .+... .+.+.+||+||++.+..++..+++++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999987765 35577665543 33444 3789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-----LFFSEASALNGDNVDT 180 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 180 (237)
|||++++++++....|+..+.... ..++|++|++||.|+... ...++..+...... +.+++|||++|.|+.+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence 999999999988887777664322 257999999999998653 33344333322111 2466899999999999
Q ss_pred HHHHHHHHHHHh
Q 026548 181 AFFRLLQEIYGA 192 (237)
Q Consensus 181 ~~~~l~~~i~~~ 192 (237)
+|++|.+.+..+
T Consensus 169 ~~~~l~~~~~~~ 180 (181)
T PLN00223 169 GLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHhhc
Confidence 999999887653
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=8.8e-27 Score=177.46 Aligned_cols=157 Identities=32% Similarity=0.566 Sum_probs=131.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999998666666654 334455677888889999999999998888888889999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------CCCHHHHHHHHHHcCC-eEEEEcCCCC
Q 026548 109 DITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDMR-----------AVSAEDAVEFAEDQGL-FFSEASALNG 175 (237)
Q Consensus 109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 175 (237)
|++++.++... ..|+..+.... .+.|+++|+||+|+.... .+..++..+++...+. +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 99999988876 45777766654 479999999999986543 2356778888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQ 187 (237)
Q Consensus 176 ~gi~~~~~~l~~ 187 (237)
.|++++|+++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999998875
No 105
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=5.3e-28 Score=183.46 Aligned_cols=152 Identities=18% Similarity=0.305 Sum_probs=123.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEEC
Q 026548 31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI 110 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 110 (237)
|+++|++|+|||||+++|.+..+...+.++.+... ..+++..+.+.+||++|++.+..++..+++++|++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999888777777776543 22344457899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH----HHHHHHHHHcCCeEEEEcCCC------CCCHHH
Q 026548 111 TKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA----EDAVEFAEDQGLFFSEASALN------GDNVDT 180 (237)
Q Consensus 111 ~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~gi~~ 180 (237)
+++.++.....|+..+.... .++|+++|+||.|+...+.... .....++.+.++.+++|||++ ++||.+
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence 99999999988888876543 5899999999999876442211 123445566678899988888 999999
Q ss_pred HHHHHHH
Q 026548 181 AFFRLLQ 187 (237)
Q Consensus 181 ~~~~l~~ 187 (237)
+|+.++.
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9988763
No 106
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=2.4e-29 Score=184.47 Aligned_cols=178 Identities=30% Similarity=0.489 Sum_probs=167.1
Q ss_pred hcccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHh
Q 026548 17 QENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSA 96 (237)
Q Consensus 17 ~~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 96 (237)
...|.+.+.+..+|++|+|..++||||+|++++.+-|...+..+++.++....+.++++.+.+.+||++|+++|......
T Consensus 9 ~~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkA 88 (246)
T KOG4252|consen 9 GMAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKA 88 (246)
T ss_pred cCCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHH
Confidence 34577788899999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548 97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD 176 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (237)
+++++.+.++||+-+|..+|+.+..|++.+.... ..+|.++|-||+|+.++..+..+++..+++++.+.++.+|++...
T Consensus 89 yyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~ 167 (246)
T KOG4252|consen 89 YYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDF 167 (246)
T ss_pred HhccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhh
Confidence 9999999999999999999999999999998877 589999999999999988999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhc
Q 026548 177 NVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 177 gi~~~~~~l~~~i~~~~~~ 195 (237)
++..+|.+|++++..+...
T Consensus 168 NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 9999999999998877654
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=5.4e-27 Score=179.77 Aligned_cols=155 Identities=25% Similarity=0.424 Sum_probs=121.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.+||+++|.+|+|||||+++|..+.+. .+.+|.+.++. .+... .+.+.+||+||++.+..++..+++++|++|+|
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999877764 35577665543 33334 37899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~ 181 (237)
||++++.+++....|+..+.... ..++|++||+||.|+.+. ...+++.+... ...+.++++||++|.|++++
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 99999999999888887765432 256899999999998653 23333333221 12234778999999999999
Q ss_pred HHHHHHHH
Q 026548 182 FFRLLQEI 189 (237)
Q Consensus 182 ~~~l~~~i 189 (237)
|++|.+.+
T Consensus 166 ~~~l~~~~ 173 (175)
T smart00177 166 LTWLSNNL 173 (175)
T ss_pred HHHHHHHh
Confidence 99998765
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=3.9e-27 Score=177.83 Aligned_cols=152 Identities=22% Similarity=0.413 Sum_probs=118.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|.+|+|||||+++|..+.+. .+.++.+.... .+... .+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999887775 35677665543 33333 477899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcCCCHHHH-HHHHH----HcCCeEEEEcCCCCCCHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAH-ADSSIRIILIGNKSDLVDMRAVSAEDA-VEFAE----DQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
|+++..+++....|+..+... .....|++|++||.|+... ...++. ..+.. ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877776433 2246899999999998642 223332 22211 123457899999999999999
Q ss_pred HHHHH
Q 026548 183 FRLLQ 187 (237)
Q Consensus 183 ~~l~~ 187 (237)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 98864
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=7.2e-27 Score=180.15 Aligned_cols=159 Identities=22% Similarity=0.378 Sum_probs=123.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.+||+++|++|+|||||++++..+.+.. +.+|.+.++. .+... .+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 5799999999999999999998877654 4567665543 33333 37899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~ 181 (237)
||++++.++.....++..+.... ...+|++||+||.|+.+ ....+++.+... ...+.++++||++|.|++++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 99999999998887777664321 24689999999999864 223333322211 11235678999999999999
Q ss_pred HHHHHHHHHHhh
Q 026548 182 FFRLLQEIYGAV 193 (237)
Q Consensus 182 ~~~l~~~i~~~~ 193 (237)
|++|.+.+.+.+
T Consensus 170 ~~~l~~~i~~~~ 181 (182)
T PTZ00133 170 LDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHhc
Confidence 999999887764
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1e-26 Score=176.74 Aligned_cols=160 Identities=26% Similarity=0.360 Sum_probs=124.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+++|++|+|||||+++|.++.+...+..+ ... ......+++..+.+.+|||||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999999886554332 222 2233445667789999999999988888888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC--HHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHH
Q 026548 109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMRAVS--AEDAVEFAEDQG--LFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~ 183 (237)
|++++.+++.+. .|+..+.... .++|+++|+||+|+.+..... .+....++.... .++++|||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 6888777655 479999999999997644321 223333344433 3799999999999999999
Q ss_pred HHHHHHHH
Q 026548 184 RLLQEIYG 191 (237)
Q Consensus 184 ~l~~~i~~ 191 (237)
.+.+.+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887654
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=1.1e-26 Score=177.61 Aligned_cols=154 Identities=24% Similarity=0.393 Sum_probs=122.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..++|+++|++|+|||||+++|.+..+. .+.++.+. ....+.+++ +.+.+||+||++.+..++..+++.+|++++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 3579999999999999999999987543 44456553 334445554 678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 180 (237)
|||++++.++.....|+..+.... ..++|++||+||+|+.+. ...+++.++.. ..+++++++||++|.|+++
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 999999999998888887765432 257999999999998653 24555555543 2356799999999999999
Q ss_pred HHHHHHH
Q 026548 181 AFFRLLQ 187 (237)
Q Consensus 181 ~~~~l~~ 187 (237)
+|++++.
T Consensus 166 l~~~l~~ 172 (173)
T cd04154 166 GIDWLVD 172 (173)
T ss_pred HHHHHhc
Confidence 9998864
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=1.7e-26 Score=180.08 Aligned_cols=148 Identities=26% Similarity=0.429 Sum_probs=126.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-----CEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-----GKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
+||+++|+.|+|||||+++|..+.+...+.+|++.++..+.+.++ +..+.+.||||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888898888877777663 567889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCcCCCHH----HHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHA-------------------DSSIRIILIGNKSDLVDMRAVSAE----DAVEFA 160 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~vvv~nK~D~~~~~~~~~~----~~~~~~ 160 (237)
+|+|||++++.+++.+..|+..+.... ..++|++||+||.|+.+.+.+..+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987632 246999999999999765544444 345678
Q ss_pred HHcCCeEEEEcCCCCC
Q 026548 161 EDQGLFFSEASALNGD 176 (237)
Q Consensus 161 ~~~~~~~~~~Sa~~~~ 176 (237)
.+.+++.++.++.+..
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8899998888776554
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=2e-27 Score=180.63 Aligned_cols=166 Identities=31% Similarity=0.534 Sum_probs=149.5
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
..+|++|||+.++|||+|+-.+..+.|+..+.||+. +-+...+.++ |..+.+.||||+|++.|..++...+.++|.++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 468999999999999999999999999999999987 6667888885 99999999999999999998888899999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcC-CeEEEEc
Q 026548 106 VVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQG-LFFSEAS 171 (237)
Q Consensus 106 lv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 171 (237)
++|++.++.+++++ .+|+.++..++ +++|+|+|++|.|+..+ ..+..+++.+.+++.| ..|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999996 77999999988 79999999999999742 3567888999999999 5699999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhh
Q 026548 172 ALNGDNVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 172 a~~~~gi~~~~~~l~~~i~~~~~ 194 (237)
|++..|+.++|+..++..+..-.
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999999988766443
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.94 E-value=6.3e-26 Score=171.25 Aligned_cols=152 Identities=23% Similarity=0.359 Sum_probs=117.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC-cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF-FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+|+++|++|+|||||+++|.+..+ ...+.++.+.... .+... .+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998763 4455567664432 23333 467899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHA---DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 180 (237)
|++++.++.....|+..+.... ..++|++||+||+|+.+.. ..++..+... .....++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888887765532 2579999999999986532 2233322221 1224589999999999999
Q ss_pred HHHHHHH
Q 026548 181 AFFRLLQ 187 (237)
Q Consensus 181 ~~~~l~~ 187 (237)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9998864
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=1.1e-25 Score=172.47 Aligned_cols=153 Identities=25% Similarity=0.434 Sum_probs=119.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.++|+++|++|+|||||+++|..+.+.. +.++.+.++ ..+.+++ +.+.+||+||++.+...+..+++++|++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5799999999999999999999887764 446655443 3344443 6789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA-----EDQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~ 181 (237)
||+++++++.....|+..+..... .++|++|++||+|+.+ ....++..+.. ...++++++|||++|.|++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 999999888888777776654332 5699999999999865 22334332222 223457999999999999999
Q ss_pred HHHHHH
Q 026548 182 FFRLLQ 187 (237)
Q Consensus 182 ~~~l~~ 187 (237)
|++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=7.9e-26 Score=170.50 Aligned_cols=152 Identities=24% Similarity=0.463 Sum_probs=118.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
+|+++|++|+|||||+++|.+..+... .++.+..+ ..+..+ ..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887543 46655443 333333 34679999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH------HHcCCeEEEEcCCCCCCHHHHH
Q 026548 110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA------EDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
++++.++.....|+..+..... .+.|++||+||+|+... ...+++.... ...++++++|||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999988888888887654322 57999999999998642 2233332221 1234568999999999999999
Q ss_pred HHHHH
Q 026548 183 FRLLQ 187 (237)
Q Consensus 183 ~~l~~ 187 (237)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98864
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.94 E-value=5.7e-26 Score=172.82 Aligned_cols=151 Identities=22% Similarity=0.368 Sum_probs=119.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
+|+++|++|||||||+++|.+. +...+.++.+.. ...+...+ +.+.+||+||++.+..++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999977 555666776654 33444544 678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHH------HHHHcC--CeEEEEcCCCC-----
Q 026548 110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVE------FAEDQG--LFFSEASALNG----- 175 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~------~~~~~~--~~~~~~Sa~~~----- 175 (237)
+++..+++.+..|+..+..... .++|++||+||.|+...+ ..++..+ ++.+.+ +.+++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999988876533 579999999999987633 2222222 222223 45778999998
Q ss_pred -CCHHHHHHHHHH
Q 026548 176 -DNVDTAFFRLLQ 187 (237)
Q Consensus 176 -~gi~~~~~~l~~ 187 (237)
.|+.+.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999964
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=2.2e-25 Score=172.98 Aligned_cols=155 Identities=22% Similarity=0.315 Sum_probs=124.7
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
...+|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+||+||+..+...+..+++.+|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999988764 344554433 34455665 568899999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH----------------cCCeEEE
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED----------------QGLFFSE 169 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 169 (237)
|+|+++..++.....|+..+..... .+.|++|++||+|+.. ....++..+.... ....+++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 9999999888888888888765433 5799999999999864 4556666665542 2245899
Q ss_pred EcCCCCCCHHHHHHHHHHH
Q 026548 170 ASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 170 ~Sa~~~~gi~~~~~~l~~~ 188 (237)
|||++|.|++++|++|.+.
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999999875
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=1.8e-25 Score=169.77 Aligned_cols=152 Identities=25% Similarity=0.429 Sum_probs=118.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCc------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFF------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
+|+|+|++|+|||||+++|.+.... ..+.++.+..+ ..+.+++ +.+.+|||||++.+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999864321 12234444443 3444554 678899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-------cCCeEEEEcCCCC
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED-------QGLFFSEASALNG 175 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 175 (237)
+++|+|++++.++.....|+..+..... .++|++|++||+|+.. ....++..++... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 9999999999888888888887665432 5799999999999865 3344445544432 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQ 187 (237)
Q Consensus 176 ~gi~~~~~~l~~ 187 (237)
.|++++|++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=1.6e-25 Score=168.52 Aligned_cols=151 Identities=25% Similarity=0.453 Sum_probs=119.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
||+++|.+|+|||||++++++... ..+.++.+... ..+.+.+ +.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999883 34445555443 3344444 678899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHHHHH
Q 026548 110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----QGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
++++.++.....|+..+..... .+.|+++++||+|+.... ..++..+.... ..++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 9999999998888887665432 679999999999987533 33444443322 345799999999999999999
Q ss_pred HHHH
Q 026548 184 RLLQ 187 (237)
Q Consensus 184 ~l~~ 187 (237)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 8864
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=3.1e-25 Score=167.10 Aligned_cols=151 Identities=25% Similarity=0.375 Sum_probs=113.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
||+++|++++|||||+++|....+.. +.++.+.+.. .+... .+.+.+|||||++.+..++..+++.+|++|+|||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998877643 3455554432 33333 3678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHH
Q 026548 110 ITKRQSFDHVARWVEELRA-HADSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
++++.++.....|+..+.. ....++|++||+||+|+.... ...+..+... ..+.+++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998887776665554433 222479999999999986432 2233322211 1234699999999999999999
Q ss_pred HHHH
Q 026548 184 RLLQ 187 (237)
Q Consensus 184 ~l~~ 187 (237)
+|++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9875
No 122
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=1.1e-24 Score=166.84 Aligned_cols=141 Identities=35% Similarity=0.678 Sum_probs=127.7
Q ss_pred CCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 026548 51 NEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA 130 (237)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~ 130 (237)
+.|...+.+|++.++..+.+.+++..+++.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45667788999999988888999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548 131 DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 131 ~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 191 (237)
..++|++||+||+|+...+.+..+++..++..+++.|++|||++|.||+++|++|++.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999997666778888889999899999999999999999999999988755
No 123
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=5.7e-25 Score=179.82 Aligned_cols=144 Identities=28% Similarity=0.496 Sum_probs=124.2
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC-------------EEEEEEEEeCCCcc
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-------------KIIKAQIWDTAGQE 88 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~ 88 (237)
..+....+||+|+|+.|+|||||+++|.++.+...+.+|++.++..+.+.+++ ..+.+.||||+|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 44556679999999999999999999999998888889998888777776642 46889999999999
Q ss_pred hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCc---C---
Q 026548 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD------------SSIRIILIGNKSDLVDMR---A--- 150 (237)
Q Consensus 89 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~vvv~nK~D~~~~~---~--- 150 (237)
.|..++..+++++|++|+|||+++..+++.+..|++.+..... .++|++||+||+|+...+ .
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 9999999999999999999999999999999999999987631 258999999999996542 2
Q ss_pred CCHHHHHHHHHHcCC
Q 026548 151 VSAEDAVEFAEDQGL 165 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~ 165 (237)
...+++++++++.++
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 357899999999874
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.93 E-value=1.5e-24 Score=166.12 Aligned_cols=157 Identities=27% Similarity=0.468 Sum_probs=126.8
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+++|..|||||||+++|..+.... ..||.+.. ...+...+ +.+.+||.+|+..++..|..++..+|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 567899999999999999999999876443 44665544 44566666 56889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH------cCCeEEEEcCCCCCCH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED------QGLFFSEASALNGDNV 178 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi 178 (237)
||+|+++.+.+......+..+..... .++|++|++||.|+.+ ....+++...... ..+.++.|||.+|+|+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 99999998888888777777665433 6899999999999875 4455555554432 2345899999999999
Q ss_pred HHHHHHHHHHH
Q 026548 179 DTAFFRLLQEI 189 (237)
Q Consensus 179 ~~~~~~l~~~i 189 (237)
.+.|+||.+.|
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999998865
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1.7e-24 Score=167.20 Aligned_cols=154 Identities=19% Similarity=0.248 Sum_probs=120.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.++|+++|.+|+|||||+++|.+..+.. +.++.+.. ...+.+++ +++.+||+||++.+..++..++..+|++|+|
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4899999999999999999999887643 33444332 23344444 6788999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH------------cCCeEEEEcCCC
Q 026548 108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAED------------QGLFFSEASALN 174 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~ 174 (237)
+|++++.++.....++..+.... ..++|++||+||.|+.. ..+.+++.+.... ....+++|||++
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 99999998888887777765432 25799999999999864 4455555544321 123489999999
Q ss_pred CCCHHHHHHHHHHH
Q 026548 175 GDNVDTAFFRLLQE 188 (237)
Q Consensus 175 ~~gi~~~~~~l~~~ 188 (237)
+.|+++++++|..+
T Consensus 170 ~~g~~~~~~wl~~~ 183 (184)
T smart00178 170 RMGYGEGFKWLSQY 183 (184)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999764
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=6.9e-24 Score=158.91 Aligned_cols=151 Identities=24% Similarity=0.436 Sum_probs=120.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEEC
Q 026548 31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI 110 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 110 (237)
|+++|++|+|||||+++|.+..+...+.++.+..+.. +..++ +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999999888887887766542 33444 6789999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 111 TKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA-----EDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 111 ~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
++..++.....|+..+..... .++|+++|+||.|+.... ..+...+.. ....++++++|++++.|++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 999888888777777654322 578999999999986532 222222221 122357899999999999999999
Q ss_pred HHH
Q 026548 185 LLQ 187 (237)
Q Consensus 185 l~~ 187 (237)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=3.3e-24 Score=162.90 Aligned_cols=156 Identities=18% Similarity=0.199 Sum_probs=109.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc---------hhhHhhhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR---------AVTSAYYR 99 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~ 99 (237)
.+|+++|.+|+|||||+++|.+..+.....+..+.......+..+ .+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999987643322222233333333333 3678999999974211 11111223
Q ss_pred CCcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548 100 GALGAVVVYDITKRQS--FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN 177 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 177 (237)
.+|++|+|+|+++..+ .+....|+..+.... .+.|+++|+||+|+....... ...++....+.++++|||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 4689999999998654 355667777776543 479999999999986543322 24455555667899999999999
Q ss_pred HHHHHHHHHHHH
Q 026548 178 VDTAFFRLLQEI 189 (237)
Q Consensus 178 i~~~~~~l~~~i 189 (237)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=3.7e-24 Score=164.32 Aligned_cols=154 Identities=21% Similarity=0.248 Sum_probs=112.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC-------CcCCCCCC------cceeEEEEEEEE-----CCEEEEEEEEeCCCcchhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE-------FFFDSKST------IGVEFQTRTVTI-----NGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~ 91 (237)
+|+++|++++|||||+++|++.. +...+.++ .+.++......+ ++..+.+.||||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999998742 11111121 122333332222 5567889999999999999
Q ss_pred hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe---EE
Q 026548 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF---FS 168 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~ 168 (237)
..+..+++.+|++|+|||+++..+...+..|.... . .++|+++|+||+|+.+.. ..+...+++..++++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876666665554332 1 468999999999986422 222334556666653 89
Q ss_pred EEcCCCCCCHHHHHHHHHHHH
Q 026548 169 EASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 169 ~~Sa~~~~gi~~~~~~l~~~i 189 (237)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999988764
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.92 E-value=6.2e-24 Score=161.66 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=113.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc----hhchhhHhh---hcCCc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE----RYRAVTSAY---YRGAL 102 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~---~~~~d 102 (237)
+|+++|.+|+|||||+++|.+........+..+.+.....+..++. ..+.+|||||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976543222222233333333444442 368899999963 222233333 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-cCCeEEEEcCCCCCCH
Q 026548 103 GAVVVYDITKR-QSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAED-QGLFFSEASALNGDNV 178 (237)
Q Consensus 103 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi 178 (237)
++++|+|++++ .+++.+..|.+.+..... .++|+++|+||+|+...... .+....+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788899899888876542 36899999999998654333 3344455555 3678999999999999
Q ss_pred HHHHHHHHHH
Q 026548 179 DTAFFRLLQE 188 (237)
Q Consensus 179 ~~~~~~l~~~ 188 (237)
+++|+++.++
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 130
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=7e-24 Score=166.39 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=116.1
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch---------hchhhH
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER---------YRAVTS 95 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~ 95 (237)
....++|+|+|++|||||||+++|.+..+.....+..+.+.....+.+++. ..+.+|||||... +...+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 455689999999999999999999998754433333334444444555443 2688999999732 22211
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548 96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG 175 (237)
Q Consensus 96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (237)
..+..+|++++|+|++++.+......|...+......++|+++|+||+|+...... ..+....+.+++++||+++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCC
Confidence 23678999999999999888887777777776655457899999999998653221 1344556678999999999
Q ss_pred CCHHHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQEI 189 (237)
Q Consensus 176 ~gi~~~~~~l~~~i 189 (237)
.|++++|++|.+.+
T Consensus 191 ~gi~~l~~~L~~~~ 204 (204)
T cd01878 191 EGLDELLEAIEELL 204 (204)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999987653
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=4.4e-23 Score=154.04 Aligned_cols=157 Identities=36% Similarity=0.540 Sum_probs=126.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.+||+++|.+|+|||||+++|....+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 36999999999999999999999997777778888888777777887767899999999999999999999999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 108 YDITKR-QSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 108 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||.++.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998876 6666554 66666666554488999999999986533 22323333334445679999999999999999876
No 132
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.92 E-value=5.2e-23 Score=149.16 Aligned_cols=161 Identities=22% Similarity=0.407 Sum_probs=129.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
++.++|.++|..||||||++++|.+.. .....|+.+ +..+...+++ +++++||.+|+...+..|..|+...|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 347899999999999999999999877 333446655 4445555555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHH------HHHHHcCCeEEEEcCCCCCCH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAV------EFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~gi 178 (237)
+|||..++..++.....+..+..... .+.|++|++||.|+.+ .++.+++. ++++...++++-||+.+|+++
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 99999999888887666666444333 6789999999999975 34444333 344567789999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 026548 179 DTAFFRLLQEIYGAV 193 (237)
Q Consensus 179 ~~~~~~l~~~i~~~~ 193 (237)
.+.+.||++.+.++.
T Consensus 167 ~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 167 LEGIDWLCDDLMSRL 181 (185)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=3.3e-23 Score=172.93 Aligned_cols=163 Identities=17% Similarity=0.098 Sum_probs=122.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh----chhh---HhhhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY----RAVT---SAYYRG 100 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~---~~~~~~ 100 (237)
...|+|+|.||||||||+++|.+........+.++.......+.+.+ ...+.+||+||.... ..+. ...+.+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 46799999999999999999998664433335555555555555532 135789999996421 1222 234567
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 101 ALGAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
++++|+|||+++.++++.+..|.+.+..+.. .+.|++||+||+|+........+....++...+.+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988788999999998877643 47899999999998764444333455555666788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 026548 179 DTAFFRLLQEIYG 191 (237)
Q Consensus 179 ~~~~~~l~~~i~~ 191 (237)
++++++|.+.+.+
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.91 E-value=6.1e-23 Score=156.73 Aligned_cols=150 Identities=22% Similarity=0.389 Sum_probs=115.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.++|+++|++|+|||||+++|.+..+.. ..++.+.. ...+..++ ..+.+||+||+..+...+..+++.+|++++|
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 6899999999999999999999876543 33554433 23444555 5688999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC--------eEEEEcCCCCCCH
Q 026548 108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL--------FFSEASALNGDNV 178 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~gi 178 (237)
+|+.+..++.....|+..+.... ..++|+++++||+|+.... ..++. ....++ +++++||++|.|+
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~~gi 163 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEI---AEALNLHDLRDRTWHIQACSAKTGEGL 163 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHH---HHHcCCcccCCCeEEEEEeECCCCCCH
Confidence 99999888888777776654432 2579999999999986522 22222 233332 4789999999999
Q ss_pred HHHHHHHHH
Q 026548 179 DTAFFRLLQ 187 (237)
Q Consensus 179 ~~~~~~l~~ 187 (237)
+++|++|++
T Consensus 164 ~~~~~~l~~ 172 (173)
T cd04155 164 QEGMNWVCK 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999875
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=3.7e-23 Score=156.24 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=105.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC---CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE---FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
.|+++|++|+|||||+++|.+.. +.....++.+.+.....+.+.+ ...+.+|||||++.+......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 58999999999999999999643 2223334444555445555542 2578899999999988777778899999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CCHHHHHHHHHH---cCCeEEEEcCCCCCCH
Q 026548 107 VYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VSAEDAVEFAED---QGLFFSEASALNGDNV 178 (237)
Q Consensus 107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi 178 (237)
|+|+++ .++.+.+ ..+... ...|+++++||+|+..... ...++..+.... .+.+++++||+++.|+
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 999987 3333322 222221 1248999999999865321 112334444444 3578999999999999
Q ss_pred HHHHHHHHH
Q 026548 179 DTAFFRLLQ 187 (237)
Q Consensus 179 ~~~~~~l~~ 187 (237)
+++|+.+.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999988754
No 136
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=159.51 Aligned_cols=170 Identities=39% Similarity=0.568 Sum_probs=140.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|+.|+|||||+++|....+...+.++.+..+........+..+.+.+|||+|++.++.++..++.++++++++|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 89999999999999999999999999999888887777777777665788999999999999999999999999999999
Q ss_pred ECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHc---CCeEEEEcC
Q 026548 109 DITK-RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQ---GLFFSEASA 172 (237)
Q Consensus 109 d~~~-~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~Sa 172 (237)
|..+ ..+.+....|...+........|+++++||+|+.... ....+......... ...++++|+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 9999 5666667889989888775579999999999997643 22222222222222 233899999
Q ss_pred C--CCCCHHHHHHHHHHHHHHhhhcccc
Q 026548 173 L--NGDNVDTAFFRLLQEIYGAVSKKEL 198 (237)
Q Consensus 173 ~--~~~gi~~~~~~l~~~i~~~~~~~~~ 198 (237)
. .+.++.++|..+.+.+.+.......
T Consensus 166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 193 (219)
T COG1100 166 KSLTGPNVNELFKELLRKLLEEIEKLVL 193 (219)
T ss_pred ccCCCcCHHHHHHHHHHHHHHhhhhhhh
Confidence 9 9999999999999999877655443
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.90 E-value=3.6e-23 Score=153.08 Aligned_cols=134 Identities=24% Similarity=0.245 Sum_probs=99.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc-----hhchhhHhhhcCCcEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE-----RYRAVTSAYYRGALGA 104 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~~ 104 (237)
||+++|++|+|||||+++|.+..+. +.++.+.+ +.. .+|||||.. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 7999999999999999999988652 22332222 111 589999972 233333 357999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVDTAFF 183 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~ 183 (237)
|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....+...++++..+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887654 2343321 249999999999864 33456677788887776 799999999999999998
Q ss_pred HHH
Q 026548 184 RLL 186 (237)
Q Consensus 184 ~l~ 186 (237)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=4.7e-23 Score=152.94 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=110.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh------chhhHhhh--cC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY------RAVTSAYY--RG 100 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~--~~ 100 (237)
++|+++|.||+|||||+|+|++.+......|..+.+.....+...+ ..+.++|+||.-.. ......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999997766778888888888888888 45779999993221 22333443 68
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
.|++|+|+|+++.+ +-.+...++.. .++|+++++||+|......... +...+.+.++++++.+||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999998743 22233444444 4799999999999866544433 36677888999999999999999999
Q ss_pred HHHHH
Q 026548 181 AFFRL 185 (237)
Q Consensus 181 ~~~~l 185 (237)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98764
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.90 E-value=4.9e-22 Score=146.98 Aligned_cols=153 Identities=45% Similarity=0.773 Sum_probs=121.3
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECC
Q 026548 33 VIGDSAVGKSQILSRFTKNEF-FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT 111 (237)
Q Consensus 33 v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 111 (237)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999887 34444554 6677777777777788999999999988888888999999999999999
Q ss_pred ChhhHHHHHHHHHH-HHHhcCCCCcEEEEEeCCCCCCCcCCCHHH-HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 112 KRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDMRAVSAED-AVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 112 ~~~s~~~~~~~~~~-~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
++.+......|+.. .......+.|+++++||+|+.......... ..........+++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 99998888877333 233333789999999999986543332222 3344455678899999999999999999875
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=2.7e-22 Score=150.65 Aligned_cols=147 Identities=18% Similarity=0.197 Sum_probs=112.1
Q ss_pred EEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch------hhHhhhc--CCcEE
Q 026548 33 VIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA------VTSAYYR--GALGA 104 (237)
Q Consensus 33 v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~ 104 (237)
|+|.+|+|||||+++|.+........++.+.+.....+.+++ ..+.+|||||+..+.. +...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998875555556666666666677776 4688999999877654 3455564 99999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
|+|+|+++.... ..|+..+.. .++|+++++||+|+........ ....++..++.+++++|+.++.|+++++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999885443 234444433 4689999999999976444433 345677778899999999999999999988
Q ss_pred HHHH
Q 026548 185 LLQE 188 (237)
Q Consensus 185 l~~~ 188 (237)
+.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8775
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=3.7e-23 Score=161.90 Aligned_cols=154 Identities=23% Similarity=0.251 Sum_probs=104.4
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC-----------cchhch
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG-----------QERYRA 92 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~ 92 (237)
.....++|+++|.+|+|||||+++|.+..+.....++.+ +....+... .+.+||||| .+.+..
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence 334568999999999999999999999886554445443 333333333 478999999 455666
Q ss_pred hhHhhhc----CCcEEEEEEECCChhhH-H---------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH
Q 026548 93 VTSAYYR----GALGAVVVYDITKRQSF-D---------HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE 158 (237)
Q Consensus 93 ~~~~~~~----~~d~~ilv~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~ 158 (237)
.+..++. .++++++|+|.++.... + .-......+.. .++|++||+||+|+.... .+...+
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~ 152 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DEVLDE 152 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HHHHHH
Confidence 5555553 45788888887653211 0 00111222222 479999999999986532 334556
Q ss_pred HHHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 159 FAEDQGL---------FFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 159 ~~~~~~~---------~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
+...+++ +++++||++| |++++|++|.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 6666654 4799999999 99999999988753
No 142
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=2.9e-22 Score=168.52 Aligned_cols=155 Identities=20% Similarity=0.188 Sum_probs=114.6
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc---------hhchhhHh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE---------RYRAVTSA 96 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~ 96 (237)
...++|+++|.+|+|||||+|+|++..+.....+..+.++....+.+++. ..+.||||+|.. .+...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 34589999999999999999999998754444455556666677777432 468899999972 232222 2
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548 97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD 176 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (237)
.+..+|++|+|+|++++.+.+.+..|...+......+.|+++|+||+|+.... ..... .....+++++||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCC
Confidence 47899999999999998888777777666665544578999999999986422 12111 1223468999999999
Q ss_pred CHHHHHHHHHHH
Q 026548 177 NVDTAFFRLLQE 188 (237)
Q Consensus 177 gi~~~~~~l~~~ 188 (237)
|+++++++|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999888754
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.89 E-value=3.5e-22 Score=151.63 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=109.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
.|+|+|.+|+|||||+++|....+.....++.+.+.....+... +....+.+|||||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999888766544454444443444443 12467889999999999988888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC-HHHHHHHHH------HcCCeEEEEcCCCCCCHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS-AEDAVEFAE------DQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~ 181 (237)
|+++....... ..+..+.. .++|+++|+||+|+....... .+...++.. ...++++++|++++.|++++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99874322221 11222222 478999999999986422110 111111111 11357999999999999999
Q ss_pred HHHHHHHH
Q 026548 182 FFRLLQEI 189 (237)
Q Consensus 182 ~~~l~~~i 189 (237)
+++|.+..
T Consensus 158 ~~~l~~~~ 165 (168)
T cd01887 158 LEAILLLA 165 (168)
T ss_pred HHHHHHhh
Confidence 99988764
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=7.4e-22 Score=164.66 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=117.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh----chhhHhh---hcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY----RAVTSAY---YRG 100 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~~~---~~~ 100 (237)
...|+|+|.||||||||+++|..........+.++.......+.+++ ...+.|||+||.... ..+...+ +.+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 46899999999999999999998764333334444555555555554 246789999996432 1233333 457
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548 101 ALGAVVVYDITKR---QSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG 175 (237)
Q Consensus 101 ~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (237)
+|++|+|+|+++. .+++.+..|.+++..+.. .+.|++||+||+|+..... ..+...++....+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999976 677888888888766542 4789999999999875432 233445566667788999999999
Q ss_pred CCHHHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQEI 189 (237)
Q Consensus 176 ~gi~~~~~~l~~~i 189 (237)
.|++++++++.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999988754
No 145
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=3.1e-22 Score=155.88 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=104.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc--CCCcCCC------------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhh
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK--NEFFFDS------------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVT 94 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 94 (237)
.+|+++|.+++|||||+++|+. ..+...+ ..+.+.++......+....+.+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4443322 1223334444444444445788999999999999999
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-CCHHHHHHHHH-------HcCCe
Q 026548 95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-VSAEDAVEFAE-------DQGLF 166 (237)
Q Consensus 95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 166 (237)
..+++++|++++|||+++.. ......|+..+.. .++|+++++||+|+..... ...++..++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998732 2223333443332 4789999999999864321 11334444442 23678
Q ss_pred EEEEcCCCCCCHHHH
Q 026548 167 FSEASALNGDNVDTA 181 (237)
Q Consensus 167 ~~~~Sa~~~~gi~~~ 181 (237)
++++||++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887544
No 146
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=5.8e-22 Score=173.54 Aligned_cols=186 Identities=22% Similarity=0.181 Sum_probs=125.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc----------hhchhh-
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE----------RYRAVT- 94 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~- 94 (237)
..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++.. +.||||||.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999998753 2334566666666667777754 5699999952 233322
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHH-HHHHcCCeEEEEc
Q 026548 95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVE-FAEDQGLFFSEAS 171 (237)
Q Consensus 95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~S 171 (237)
..+++.+|++|+|||+++..++..+. ++..+.. .++|++||+||+|+...... ..++..+ +.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23578999999999999987777663 4444433 47899999999999642211 0111111 1222346899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcc------ccccCCCccCCCCCCCCCcccc
Q 026548 172 ALNGDNVDTAFFRLLQEIYGAVSKK------ELECGNGKVDGPPMLAGSKIDV 218 (237)
Q Consensus 172 a~~~~gi~~~~~~l~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 218 (237)
|++|.|++++|+.+.+.+.....+. .+........+||...|+.+++
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~~~k~ 416 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPPVRGGKQPRI 416 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCCCCeeeeE
Confidence 9999999999999887654322211 1222223445566667777665
No 147
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=1e-21 Score=160.46 Aligned_cols=152 Identities=18% Similarity=0.121 Sum_probs=104.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYYRG 100 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 100 (237)
+|+|+|.+|+|||||+|+|++.++...+. +.++.... ..+...+. .++.||||||...... .....+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999988754433 33333322 23333222 4688999999654211 13346789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 026548 101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVD 179 (237)
Q Consensus 101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 179 (237)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+..... ..+....+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999866553 334444433 4689999999999864222 12234444444444 69999999999999
Q ss_pred HHHHHHHHHH
Q 026548 180 TAFFRLLQEI 189 (237)
Q Consensus 180 ~~~~~l~~~i 189 (237)
++++++.+.+
T Consensus 154 ~L~~~l~~~l 163 (270)
T TIGR00436 154 FLAAFIEVHL 163 (270)
T ss_pred HHHHHHHHhC
Confidence 9888876654
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.88 E-value=5.3e-22 Score=151.66 Aligned_cols=154 Identities=22% Similarity=0.211 Sum_probs=108.0
Q ss_pred EEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchh----chh---hHhhhcCCcEE
Q 026548 33 VIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERY----RAV---TSAYYRGALGA 104 (237)
Q Consensus 33 v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~d~~ 104 (237)
++|++|+|||||+++|.+........+..+.......+.++ + ..+.+|||||.... ..+ ....++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999987522222333333333444455 4 56789999996322 222 23456789999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEc
Q 026548 105 VVVYDITKR------QSFDHVARWVEELRAHAD-------SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 105 ilv~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 171 (237)
++|+|+.+. .+++.+..|...+..... .+.|+++|+||+|+..................+..++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 577777777777665432 3699999999999875433322222333444567799999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 026548 172 ALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 172 a~~~~gi~~~~~~l~~~ 188 (237)
|+++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999988764
No 149
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1e-21 Score=145.92 Aligned_cols=158 Identities=22% Similarity=0.380 Sum_probs=129.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
...+|+++|-.+|||||++.+|...++... .||++....... +. .+.+.+||.+|+++++.+|..|+++.+++||
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~--yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVE--YK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEE--Ec--ceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 357999999999999999999998887655 688776665444 44 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-----LFFSEASALNGDNVDT 180 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 180 (237)
|+|.+|.+-+...+..+..+..... .+.|+++++||.|+++ ..+..++.+...... ..+..|+|.+|+|+.+
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 9999999888888877777766655 6899999999999987 445555554444332 3366789999999999
Q ss_pred HHHHHHHHHHH
Q 026548 181 AFFRLLQEIYG 191 (237)
Q Consensus 181 ~~~~l~~~i~~ 191 (237)
.++++...+..
T Consensus 169 gl~wl~~~~~~ 179 (181)
T KOG0070|consen 169 GLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHhc
Confidence 99999887754
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=2.7e-21 Score=167.03 Aligned_cols=155 Identities=24% Similarity=0.209 Sum_probs=119.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh--------hHh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV--------TSA 96 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~ 96 (237)
...++|+++|++|+|||||+|+|++..... ...++++.++....+.+++. .+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 346899999999999999999999876432 33356667777777788874 5679999997654432 235
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548 97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD 176 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (237)
+++.+|++|+|||++++.+.+.. |+..+.. .+.|+++|+||+|+... ....++..++.+++++||++ .
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence 67899999999999988776654 6665543 46899999999998642 12345566778899999997 6
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 026548 177 NVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 177 gi~~~~~~l~~~i~~~~~ 194 (237)
|++++|+.+.+.+.+...
T Consensus 347 gI~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 347 KIKALVDLLTQKINAFYS 364 (442)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999998877653
No 151
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=4.1e-21 Score=137.75 Aligned_cols=168 Identities=26% Similarity=0.361 Sum_probs=137.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCC--CCCcceeEEEEEEEE-CCEEEEEEEEeCCCcchh-chhhHhhhcCCcE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDS--KSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQERY-RAVTSAYYRGALG 103 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d~ 103 (237)
.-||+|+|.-++|||+++..|..++..+.. .+|+. +.+...+.. .|...++.|+||.|...+ ..+-..++.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 568999999999999999999877665543 35554 333344333 455567999999997766 6677889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
+++|||..+++||+.+......+....+ ..+|++|++||+|+.+.+++..+.+..|+.+..+.++++++.+..++-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 9999999999999987666565655544 679999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 026548 183 FRLLQEIYGAVSKK 196 (237)
Q Consensus 183 ~~l~~~i~~~~~~~ 196 (237)
.+++..+..--.++
T Consensus 168 ~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 168 TYLASRLHQPQSKS 181 (198)
T ss_pred HHHHHhccCCcccc
Confidence 99998876655443
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=3e-21 Score=144.51 Aligned_cols=146 Identities=23% Similarity=0.246 Sum_probs=108.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh--------hHhhhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV--------TSAYYR 99 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~ 99 (237)
++|+++|++|+|||||++++.+..... ...++.+..+....+...+ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999887533 2234444455445555555 46789999997654321 234678
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
.+|++++|+|++++.+......+.. ..+.|+++++||+|+...... .....+.+++++||+++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998777666544333 247999999999998754332 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 026548 180 TAFFRLLQEI 189 (237)
Q Consensus 180 ~~~~~l~~~i 189 (237)
+++++|...+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999887653
No 153
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.88 E-value=3.7e-22 Score=142.14 Aligned_cols=153 Identities=22% Similarity=0.402 Sum_probs=125.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
...+.++|-.+||||||+|.+..+.+.....|++++.... +....+.+.+||.||+..|+.+|..|.+.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 3579999999999999999999888888888888765432 334457899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--------CeEEEEcCCCCCCH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--------LFFSEASALNGDNV 178 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi 178 (237)
+|+.+++.+...+..++.+..... .++|++|++||.|+.+ ..... ++..++| +..|.+|+++..++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~---~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKI---ALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHH---HHHHHhCccccccceEEEEEEEEcCCccH
Confidence 999999888877776666655444 7899999999999876 33332 3333333 35889999999999
Q ss_pred HHHHHHHHHHH
Q 026548 179 DTAFFRLLQEI 189 (237)
Q Consensus 179 ~~~~~~l~~~i 189 (237)
+.+..||+++-
T Consensus 171 d~~~~Wli~hs 181 (186)
T KOG0075|consen 171 DITLDWLIEHS 181 (186)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 154
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.88 E-value=6.2e-22 Score=142.31 Aligned_cols=167 Identities=25% Similarity=0.463 Sum_probs=145.7
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
.....+||.++|++..|||||+-.+.++.++..+..+.+..+..+.+.+.+..+.+.+||.+|++++..+.......+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 44457999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------cCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM------RAVSAEDAVEFAEDQGLFFSEASALNGDN 177 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 177 (237)
++++||++.+.++..+..|+.+.+...+..+|+ +|++|.|..-. +++ ...++..++-+++++++||+..+.+
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I-~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETI-SRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHH-HHHHHHHHHHhCCcEEEeecccccc
Confidence 999999999999999999999999888777776 68999995321 111 2246677888999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 026548 178 VDTAFFRLLQEIYGA 192 (237)
Q Consensus 178 i~~~~~~l~~~i~~~ 192 (237)
+..+|..+..+++..
T Consensus 174 v~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999998777666543
No 155
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=4.9e-21 Score=160.76 Aligned_cols=163 Identities=20% Similarity=0.258 Sum_probs=111.1
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcch-hchhh-------Hh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQER-YRAVT-------SA 96 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~-------~~ 96 (237)
...++|+++|.+|+|||||+|+|++..+..... +..+.+.....+..++ .++.||||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 455799999999999999999999988754322 2233344445556666 4678999999743 22211 12
Q ss_pred hhcCCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEEEEcCC
Q 026548 97 YYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFSEASAL 173 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 173 (237)
.+..+|++|+|+|..+. +... ..|+..+.. .+.|.++|+||+|+... ...+..+++...+ ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 46799999999997653 3333 334554443 35677899999998642 2445556665544 569999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccccccCC
Q 026548 174 NGDNVDTAFFRLLQEIYGAVSKKELECGN 202 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~i~~~~~~~~~~~~~ 202 (237)
+|.|++++|++|.+.+ +..++..++
T Consensus 200 tg~gv~eL~~~L~~~l----~~~~~~~~~ 224 (339)
T PRK15494 200 SGKNIDGLLEYITSKA----KISPWLYAE 224 (339)
T ss_pred CccCHHHHHHHHHHhC----CCCCCCCCC
Confidence 9999999988876644 334444444
No 156
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.87 E-value=2.1e-21 Score=139.23 Aligned_cols=114 Identities=32% Similarity=0.621 Sum_probs=89.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCc--CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFF--FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
||+|+|++|+|||||+++|++..+. ....+..+..+......+......+.+||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 12233444455555666777766799999999999998888889999999999
Q ss_pred EECCChhhHHHHHH---HHHHHHHhcCCCCcEEEEEeCCC
Q 026548 108 YDITKRQSFDHVAR---WVEELRAHADSSIRIILIGNKSD 144 (237)
Q Consensus 108 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~vvv~nK~D 144 (237)
||++++.+++.+.. |+..+.... .++|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 99999999988754 455555543 5699999999998
No 157
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.5e-20 Score=160.86 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=117.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----hchhhHhh---hcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----YRAVTSAY---YRGA 101 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~~ 101 (237)
..|+|+|.||||||||+++|++........+.++.......+.+++ ...+.+||+||... ...+...+ +.++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4899999999999999999998764433334444444444444441 24688999999643 22233334 4569
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548 102 LGAVVVYDITKR---QSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD 176 (237)
Q Consensus 102 d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (237)
+++|+|+|+++. ++++.+..|.+.+..+.. .+.|++||+||+|+.. ..+...++...++.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 677777888888776543 4789999999999843 2344556666667789999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 026548 177 NVDTAFFRLLQEIYGA 192 (237)
Q Consensus 177 gi~~~~~~l~~~i~~~ 192 (237)
|+++++++|.+.+.+.
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998876543
No 158
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=5.4e-21 Score=143.23 Aligned_cols=147 Identities=19% Similarity=0.144 Sum_probs=102.9
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhhcCCc
Q 026548 32 VVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYYRGAL 102 (237)
Q Consensus 32 ~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d 102 (237)
+++|.+|+|||||+++|.+..... ...+..+.+........++ ..+.+|||||...+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999875322 2223334444445555555 5688999999877543 3345678999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVDTA 181 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~ 181 (237)
++++|+|+.+..+.... .+...+.. .+.|+++|+||+|+...... .......+. .++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875444332 12222322 36999999999998653221 233344565 6899999999999999
Q ss_pred HHHHHHHH
Q 026548 182 FFRLLQEI 189 (237)
Q Consensus 182 ~~~l~~~i 189 (237)
|+++++.+
T Consensus 150 ~~~l~~~~ 157 (157)
T cd01894 150 LDAILELL 157 (157)
T ss_pred HHHHHhhC
Confidence 99998753
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=3.2e-21 Score=149.88 Aligned_cols=158 Identities=16% Similarity=0.096 Sum_probs=102.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC----CCcC---CCCCCcceeEEEEEEEEC------------CEEEEEEEEeCCCcch
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN----EFFF---DSKSTIGVEFQTRTVTIN------------GKIIKAQIWDTAGQER 89 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~----~~~~---~~~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~ 89 (237)
++|+++|++++|||||+++|+.. .+.. ...+..+.......+.+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 1111 111223333333333332 3356789999999876
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CCHHHHHHHHH------
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VSAEDAVEFAE------ 161 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~~~~~~~~~~------ 161 (237)
+........+.+|++++|+|+.+.........+. +... .+.|+++++||+|+..... ...++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444444567789999999998754333322222 1122 2579999999999864221 11222222211
Q ss_pred -HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 162 -DQGLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 162 -~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
..+++++++||+++.|+++++++|.+++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13578999999999999999999988764
No 160
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=7.6e-21 Score=163.42 Aligned_cols=164 Identities=19% Similarity=0.207 Sum_probs=117.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh--chhhH------hhhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY--RAVTS------AYYR 99 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~------~~~~ 99 (237)
.++|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+.+.. .+.+|||+|.... ...+. ..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999999887654444555666666666665531 5679999997332 22222 2368
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCCCH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNV 178 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 178 (237)
.+|++|+|+|++++.+...+..|...+......++|+++|+||+|+..... ... . ....+.+ ++++||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCCCH
Confidence 999999999999988877776555555544435799999999999864211 111 1 1123445 588999999999
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 026548 179 DTAFFRLLQEIYGAVSKKE 197 (237)
Q Consensus 179 ~~~~~~l~~~i~~~~~~~~ 197 (237)
++++++|.+.+...+...+
T Consensus 351 deL~e~I~~~l~~~~~~~~ 369 (426)
T PRK11058 351 PLLFQALTERLSGEVAQHT 369 (426)
T ss_pred HHHHHHHHHHhhhccEEEE
Confidence 9999999998866554433
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=5e-21 Score=147.85 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=110.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCC----------------CcceeEEEEEEEECCEEEEEEEEeCCCcchhchh
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKS----------------TIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV 93 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 93 (237)
+|+|+|.+|+|||||+++|.+......... ..+.......+...+ ..+.+|||||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence 589999999999999999998876554322 122232223333333 57889999999999888
Q ss_pred hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHHH---------
Q 026548 94 TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAED--------- 162 (237)
Q Consensus 94 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~~--------- 162 (237)
+..+++.+|++++|+|+.++..... ..++..+.. .+.|+++++||+|+...... ..+...+....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8899999999999999987654332 233344333 47999999999998652211 12233333333
Q ss_pred -----cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 163 -----QGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 163 -----~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
...+++++||++|.|++++|.++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246799999999999999999888764
No 162
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=6.2e-21 Score=165.61 Aligned_cols=149 Identities=21% Similarity=0.236 Sum_probs=113.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh--------hHhh
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV--------TSAY 97 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~ 97 (237)
..++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++ ..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999988753 23345556666667777777 45789999998654432 2236
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN 177 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 177 (237)
+..+|++++|||++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999999877765544433 2478999999999986532221 33456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 026548 178 VDTAFFRLLQEIYG 191 (237)
Q Consensus 178 i~~~~~~l~~~i~~ 191 (237)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887754
No 163
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.86 E-value=1.1e-20 Score=168.56 Aligned_cols=156 Identities=20% Similarity=0.237 Sum_probs=115.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC-------CcCCCCC------CcceeEEEEEEEE-----CCEEEEEEEEeCCCcch
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNE-------FFFDSKS------TIGVEFQTRTVTI-----NGKIIKAQIWDTAGQER 89 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~ 89 (237)
..+|+++|+.++|||||+++|+... +...+.. ..+.++....+.+ ++..+.+.||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 5689999999999999999998642 1111211 1233333333322 45668899999999999
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC---e
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL---F 166 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 166 (237)
|...+..+++.+|++|+|||+++..+.+....|...+. .++|+++|+||+|+.... ..+...++...+++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998766666666655432 368999999999986421 12223455555665 3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Q 026548 167 FSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 167 ~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
++++||++|.|++++|++|.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999888765
No 164
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.7e-20 Score=163.06 Aligned_cols=186 Identities=22% Similarity=0.200 Sum_probs=121.7
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh-----------
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV----------- 93 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 93 (237)
...++|+++|.+|+|||||+++|++..... ...++++.+.....+..++. .+.+|||||...+...
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 346899999999999999999999876433 22344445555555556664 5789999996544322
Q ss_pred hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH-HH----cCCeEE
Q 026548 94 TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFA-ED----QGLFFS 168 (237)
Q Consensus 94 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~ 168 (237)
....++.+|++|+|+|++++.+..+.. ++..+.. .+.|++||+||+|+... ....+...+.. .. .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence 124678999999999999877665542 3333333 47899999999998721 11122222222 22 247899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHhhhcc------ccccCCCccCCCCCCCCCcccc
Q 026548 169 EASALNGDNVDTAFFRLLQEIYGAVSKK------ELECGNGKVDGPPMLAGSKIDV 218 (237)
Q Consensus 169 ~~Sa~~~~gi~~~~~~l~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 218 (237)
++||++|.|++++|+++.+.+.....+. ++........+||...|+.+++
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~ 378 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEAVAAHPPPLVNGRRLKI 378 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCCCCCCCceeeE
Confidence 9999999999999999887654332211 1111222334566666666654
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.3e-20 Score=165.11 Aligned_cols=155 Identities=24% Similarity=0.224 Sum_probs=111.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch--------hchhhHh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--------YRAVTSA 96 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~ 96 (237)
....+|+|+|.+|+|||||+|+|++..... ...++++.+.....+.+++. .+.||||||.+. +...+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~ 113 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEV 113 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence 345799999999999999999999876543 33455556666666666664 577999999763 3334556
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCC
Q 026548 97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNG 175 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 175 (237)
+++.+|++|+|||+++..+... ..|...+.. .++|+++|+||+|+.... .+....+ ..+. .+++|||++|
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g 184 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHG 184 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCC
Confidence 7889999999999998655433 334444443 479999999999986421 1122222 2333 3579999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQEIYG 191 (237)
Q Consensus 176 ~gi~~~~~~l~~~i~~ 191 (237)
.|++++|+++++.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999988754
No 166
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.86 E-value=1.2e-20 Score=142.16 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=100.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----hchhhHhhhcCCcEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----YRAVTSAYYRGALGAV 105 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~~~d~~i 105 (237)
+|+++|.+|+|||||+|+|.+... . ...+ ..+.+... .+|||||... +.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999886531 1 1112 12222222 2799999622 2222223478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC--eEEEEcCCCCCCHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL--FFSEASALNGDNVDTAFF 183 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~~~~ 183 (237)
+|+|+++..++ +..|+..+ ..+.|+++++||+|+.. ...+...+++...+. +++++||+++.|++++|+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999987654 22343332 13679999999999854 245667777777775 899999999999999999
Q ss_pred HHHHHHHHhh
Q 026548 184 RLLQEIYGAV 193 (237)
Q Consensus 184 ~l~~~i~~~~ 193 (237)
++.+.+-+..
T Consensus 141 ~l~~~~~~~~ 150 (158)
T PRK15467 141 YLASLTKQEE 150 (158)
T ss_pred HHHHhchhhh
Confidence 9888775544
No 167
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=3.3e-20 Score=160.70 Aligned_cols=163 Identities=20% Similarity=0.127 Sum_probs=115.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh----chh---hHhhhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY----RAV---TSAYYRG 100 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~ 100 (237)
...|+|+|.||||||||+++|.+........+.++.......+.+.+ ..+.|||+||.... ..+ ....+.+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 46899999999999999999998765443335555555555566665 46889999995321 111 2234578
Q ss_pred CcEEEEEEECCCh----hhHHHHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC
Q 026548 101 ALGAVVVYDITKR----QSFDHVARWVEELRAHA-----------DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL 165 (237)
Q Consensus 101 ~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 165 (237)
+|++|+|+|+++. +.+.++..|...+..+. ..+.|++||+||+|+.+.... .+...+.....++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence 9999999999752 34555555555554432 146899999999998653322 2233334445678
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548 166 FFSEASALNGDNVDTAFFRLLQEIYGAV 193 (237)
Q Consensus 166 ~~~~~Sa~~~~gi~~~~~~l~~~i~~~~ 193 (237)
+++++||+++.|+++++++|.+.+....
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 8999999999999999999988876543
No 168
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.86 E-value=3.7e-20 Score=144.13 Aligned_cols=165 Identities=17% Similarity=0.160 Sum_probs=108.8
Q ss_pred ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc----------c
Q 026548 19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ----------E 88 (237)
Q Consensus 19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~ 88 (237)
.+.+...+..++|+++|.+|+|||||+++|++..+...+.++.+.+........+ ..+.||||||. +
T Consensus 15 ~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~ 91 (196)
T PRK00454 15 KLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKE 91 (196)
T ss_pred cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHH
Confidence 3444566678999999999999999999999876544444444443333333322 56889999994 3
Q ss_pred hhchhhHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHHHc
Q 026548 89 RYRAVTSAYYRG---ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAEDQ 163 (237)
Q Consensus 89 ~~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~~~ 163 (237)
.+..+...+++. ++++++++|.+++.+.... .+...+.. .++|+++++||+|+.+..+. ..+...+.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~ 167 (196)
T PRK00454 92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG 167 (196)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc
Confidence 344444555554 4678888998775433221 11122222 46899999999998653221 122233444444
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 164 GLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 164 ~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
..+++++||+++.|++++++.|.+.+.
T Consensus 168 ~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 168 DDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 678999999999999999988876653
No 169
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.85 E-value=4.1e-20 Score=164.33 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=114.7
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
..+..+|+++|++++|||||+++|.+..+.....++.+.+.....+.+++. ..+.||||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 345679999999999999999999998877666566666655555665442 2678999999999999999899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC---------CeEEEEcCCCC
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG---------LFFSEASALNG 175 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 175 (237)
|+|||+++....+....+ .... ..++|++|++||+|+.+. ..+...+.+...+ .+++++||++|
T Consensus 163 ILVVda~dgv~~qT~e~i-~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG 235 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAI-SHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG 235 (587)
T ss_pred EEEEECCCCCCHhHHHHH-HHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence 999999873222222211 2222 247999999999998642 2344444433322 46999999999
Q ss_pred CCHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQ 187 (237)
Q Consensus 176 ~gi~~~~~~l~~ 187 (237)
.|++++|+++..
T Consensus 236 eGI~eLl~~I~~ 247 (587)
T TIGR00487 236 DGIDELLDMILL 247 (587)
T ss_pred CChHHHHHhhhh
Confidence 999999998864
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.85 E-value=8e-20 Score=137.77 Aligned_cols=156 Identities=21% Similarity=0.155 Sum_probs=103.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYYR 99 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 99 (237)
..+|+++|++|+|||||+++|.+...........+........ .....+.+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999887654333222222211222 222235688999999654322 2344578
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNV 178 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 178 (237)
.+|++++|+|++++.+. ....+...+.. .+.|+++++||+|+........+....+....+ .+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 99999999999986221 12223333333 268999999999987432222333344444443 67999999999999
Q ss_pred HHHHHHHHHH
Q 026548 179 DTAFFRLLQE 188 (237)
Q Consensus 179 ~~~~~~l~~~ 188 (237)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=1.2e-19 Score=137.96 Aligned_cols=155 Identities=21% Similarity=0.205 Sum_probs=104.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCC-CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-----------hhH
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFD-SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-----------VTS 95 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~~ 95 (237)
.++|+++|.+|+|||||+++|++...... ..+..+.......+..++. .+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 57899999999999999999998764332 2233333444445555654 467999999643311 112
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH-HHHHc----CCeEEEE
Q 026548 96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE-FAEDQ----GLFFSEA 170 (237)
Q Consensus 96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~~ 170 (237)
..+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+........+...+ +.... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 356799999999999987665443 23333322 468999999999987543222222222 22333 3679999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 026548 171 SALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 171 Sa~~~~gi~~~~~~l~~~ 188 (237)
||+++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999888753
No 172
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=8.4e-20 Score=155.34 Aligned_cols=162 Identities=17% Similarity=0.096 Sum_probs=116.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhHhhhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTSAYYRG 100 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 100 (237)
...|+|+|.||||||||+|+|++.+......+.++.......+...+. ..+.|+||||..... ......+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 347999999999999999999987754444455555555555555432 357899999964321 112234788
Q ss_pred CcEEEEEEECC---ChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEEEEcCC
Q 026548 101 ALGAVVVYDIT---KRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFSEASAL 173 (237)
Q Consensus 101 ~d~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 173 (237)
+|++++|+|++ +...++.+..|++.+..+.. .+.|++||+||+|+...... .+...++....+ .+++.+||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999988 45566777788887776542 46899999999998653322 233444555444 468999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 026548 174 NGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~i~~ 191 (237)
++.|++++++.|.+.+.+
T Consensus 317 tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCcCHHHHHHHHHHHhhh
Confidence 999999999988877654
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.84 E-value=6.5e-20 Score=140.99 Aligned_cols=150 Identities=18% Similarity=0.215 Sum_probs=99.4
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc----------hhch
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE----------RYRA 92 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~ 92 (237)
.+....++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 3445678999999999999999999998864443334444333333343443 57899999942 2333
Q ss_pred hhHhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CCCHHHHHHHHHHcC--C
Q 026548 93 VTSAYYR---GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR--AVSAEDAVEFAEDQG--L 165 (237)
Q Consensus 93 ~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~~~~~~~~~~~~~~--~ 165 (237)
+...+++ .+|++++|+|++++.+.... .++..+.. .++|+++++||+|+.... ....+++++.....+ .
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 4444554 45899999999875544443 22333332 478999999999986422 122344455555543 4
Q ss_pred eEEEEcCCCCCCHH
Q 026548 166 FFSEASALNGDNVD 179 (237)
Q Consensus 166 ~~~~~Sa~~~~gi~ 179 (237)
.++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999973
No 174
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.2e-20 Score=140.06 Aligned_cols=164 Identities=30% Similarity=0.538 Sum_probs=144.5
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++++++|+.|.||||+++++..+.+...+.++.+.......+..+...+.+..|||+|++.+..+...++=.....|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45899999999999999999999999999999999999998888777766789999999999999999998888888899
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
++||++...++.++.+|.+.+...+ .++|+|+++||.|..... .......+.++.++.|+++||+.+.+...-|-++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence 9999999999999999999998888 479999999999975422 2334556677788999999999999999999999
Q ss_pred HHHHHHh
Q 026548 186 LQEIYGA 192 (237)
Q Consensus 186 ~~~i~~~ 192 (237)
++++...
T Consensus 165 arKl~G~ 171 (216)
T KOG0096|consen 165 ARKLTGD 171 (216)
T ss_pred hhhhcCC
Confidence 9887543
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.84 E-value=1.1e-19 Score=162.19 Aligned_cols=154 Identities=17% Similarity=0.180 Sum_probs=116.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC---CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE---FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
+.|+++|++++|||||+++|++.. +......+++.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999743 3344556667777666677766 67889999999999888888899999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC--CHHHHHHHHHHc----CCeEEEEcCCCC
Q 026548 106 VVYDITK---RQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV--SAEDAVEFAEDQ----GLFFSEASALNG 175 (237)
Q Consensus 106 lv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 175 (237)
+|+|+++ +++.+.+ ..+.. .++| ++|++||+|+.+.... ..+++.++.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 4444333 22222 3677 9999999998653321 233455555554 478999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQEIYG 191 (237)
Q Consensus 176 ~gi~~~~~~l~~~i~~ 191 (237)
.|+++++..|...+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999887765543
No 176
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=1.3e-19 Score=149.70 Aligned_cols=157 Identities=21% Similarity=0.182 Sum_probs=103.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc--------hhhHhhhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR--------AVTSAYYR 99 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~ 99 (237)
.-.|+|+|.+|||||||+|+|++..+...+....+.......+...+ ..++.+|||||..... ......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~-~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED-DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC-CceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 35699999999999999999999887654432222222222222222 2678899999964432 22334578
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNV 178 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 178 (237)
.+|++++|+|+++..+. .....+..+.. .+.|+++|+||+|+........+....+....+ ..++++||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP-GDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCCh-hHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 99999999999883221 12222233332 468999999999987432222333444444444 56999999999999
Q ss_pred HHHHHHHHHHH
Q 026548 179 DTAFFRLLQEI 189 (237)
Q Consensus 179 ~~~~~~l~~~i 189 (237)
+++++++.+.+
T Consensus 160 ~~L~~~L~~~l 170 (292)
T PRK00089 160 DELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHhC
Confidence 99998887765
No 177
>COG1159 Era GTPase [General function prediction only]
Probab=99.84 E-value=8.3e-20 Score=145.87 Aligned_cols=166 Identities=20% Similarity=0.141 Sum_probs=111.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYYR 99 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 99 (237)
.--|+++|.||+|||||+|+|++.+....+....++......+...+ ..++.|+||||...... .....+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 45799999999999999999999999887765554544555554444 46899999999443322 2334568
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNV 178 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 178 (237)
.+|+++||+|+++...- .....++.+.. .+.|+++++||+|.................... ..++++||++|.++
T Consensus 85 dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 85 DVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV 160 (298)
T ss_pred cCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence 99999999999884432 22233344444 468999999999987644321222222222333 35999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccCC
Q 026548 179 DTAFFRLLQEIYGAVSKKELECGN 202 (237)
Q Consensus 179 ~~~~~~l~~~i~~~~~~~~~~~~~ 202 (237)
+.+.+.+. +.++..++-.++
T Consensus 161 ~~L~~~i~----~~Lpeg~~~yp~ 180 (298)
T COG1159 161 DTLLEIIK----EYLPEGPWYYPE 180 (298)
T ss_pred HHHHHHHH----HhCCCCCCcCCh
Confidence 96665544 444444444443
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.83 E-value=1.4e-19 Score=163.32 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=113.1
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEE--EEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQT--RTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
..+...|+|+|+.++|||||+++|....+.....++.+.+... ..+..++....+.||||||++.|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3456799999999999999999999887765444444433322 23333344578999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH-------HHcC--CeEEEEcCC
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFA-------EDQG--LFFSEASAL 173 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~ 173 (237)
++|+|||+++.........| ..+. ..++|++|++||+|+... ..+.+.+.. ..++ ++++++||+
T Consensus 321 iaILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred EEEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 99999999874322222222 2222 257999999999998652 223332222 2233 679999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 026548 174 NGDNVDTAFFRLLQEI 189 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~i 189 (237)
+|.|++++|++|....
T Consensus 394 tG~GIdeLle~I~~l~ 409 (742)
T CHL00189 394 QGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCHHHHHHhhhhhh
Confidence 9999999999887653
No 179
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.83 E-value=8.1e-20 Score=143.19 Aligned_cols=155 Identities=21% Similarity=0.225 Sum_probs=99.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcC---CCCCCcceeEEEEEEEE-------------------------C--C----
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFF---DSKSTIGVEFQTRTVTI-------------------------N--G---- 74 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~-------------------------~--~---- 74 (237)
++|+++|+.|+|||||+.+|.+...+. ......+.......+.. . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997552111 11111111111111110 0 1
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
...++.||||||++.+...+...+..+|++++|+|++++ ++...+ ..+... ...|++|++||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l----~~~~~~--~~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL----AALEIM--GLKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH----HHHHHc--CCCcEEEEEEchhccCHHH
Confidence 015688999999999888778888899999999999873 222222 222221 2247899999999864221
Q ss_pred C--CHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 151 V--SAEDAVEFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 151 ~--~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
. ..+...++.... +++++++||++|.|++++|++|.+.+
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1 122333433332 56799999999999999998887644
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.83 E-value=2.7e-19 Score=162.75 Aligned_cols=154 Identities=20% Similarity=0.231 Sum_probs=113.6
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
..+...|+|+|+.++|||||+++|....+........+.+.....+.+++ ..+.||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45678999999999999999999998877655555555555555556665 4688999999999999999899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH-------HHHHcC--CeEEEEcCCCC
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE-------FAEDQG--LFFSEASALNG 175 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~ 175 (237)
|+|||+++...-+....| .... ..++|++|++||+|+.+. ..+.+.. +...++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~i-~~a~---~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI-NHAK---AAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHHH-HHHH---hcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 999999873222222222 2222 257999999999998642 1222222 122333 67999999999
Q ss_pred CCHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQ 187 (237)
Q Consensus 176 ~gi~~~~~~l~~ 187 (237)
.|++++|++|..
T Consensus 438 ~GI~eLle~I~~ 449 (787)
T PRK05306 438 EGIDELLEAILL 449 (787)
T ss_pred CCchHHHHhhhh
Confidence 999999998875
No 181
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=2e-19 Score=160.57 Aligned_cols=146 Identities=20% Similarity=0.213 Sum_probs=111.5
Q ss_pred cCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh------hHhhh--cCCcEEEE
Q 026548 35 GDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV------TSAYY--RGALGAVV 106 (237)
Q Consensus 35 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~~il 106 (237)
|++|+|||||+|+|.+........++.+.+.....+..++. ++.+|||||..++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999998865556677777777667777764 5789999998776543 33333 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
|+|+++.+. ...+..++.+ .++|+++++||+|+.+..... .+..++.+..+++++++||++|.|++++++++.
T Consensus 79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987432 2233333332 479999999999986554443 346778888999999999999999999999988
Q ss_pred HHH
Q 026548 187 QEI 189 (237)
Q Consensus 187 ~~i 189 (237)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 182
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.4e-19 Score=126.13 Aligned_cols=155 Identities=24% Similarity=0.460 Sum_probs=122.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
..+|+++|-.++||||++..|+.... ....||+++.+ ..+++.+ +.+.+||.+|++..+.+|.+|+.+..++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv--etVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC-cccccccceeE--EEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 46899999999999999999988773 44457766544 4444444 7899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-----LFFSEASALNGDNVDTA 181 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~ 181 (237)
+|..+.+..+..+..+..+..... ...|++|.+||-|++. ...++++..+..... ..+..+++.+|+|+.+-
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 999988666666655555444333 6799999999999987 456667776655332 34778999999999999
Q ss_pred HHHHHHHH
Q 026548 182 FFRLLQEI 189 (237)
Q Consensus 182 ~~~l~~~i 189 (237)
|.+|...+
T Consensus 170 lswlsnn~ 177 (180)
T KOG0071|consen 170 LSWLSNNL 177 (180)
T ss_pred HHHHHhhc
Confidence 99988654
No 183
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.82 E-value=1.2e-19 Score=140.67 Aligned_cols=157 Identities=22% Similarity=0.263 Sum_probs=107.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC------------------CCCCcceeEEEEEEE--ECCEEEEEEEEeCCC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD------------------SKSTIGVEFQTRTVT--INGKIIKAQIWDTAG 86 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~~~~l~Dt~G 86 (237)
+.++|+++|+.++|||||+++|........ .....+.......+. ..+ ..+.++||||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~--~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN--RKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS--EEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc--cceeeccccc
Confidence 367999999999999999999985442111 112233333444444 444 5688999999
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-CCCHHHHH-HHHHHc-
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR-AVSAEDAV-EFAEDQ- 163 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~-~~~~~~~~-~~~~~~- 163 (237)
+..|.......+..+|++|+|+|+.+...... ...+..+.. .++|++|++||+|+...+ ....++.. .+.+..
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 99998888888999999999999987543222 233333333 478999999999987321 11112222 333333
Q ss_pred -----CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 164 -----GLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 164 -----~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
.++++++||.+|.|++++++.+.+.+
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 25799999999999999888887764
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=5.2e-19 Score=153.92 Aligned_cols=146 Identities=24% Similarity=0.208 Sum_probs=106.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch--------hchhhHhhhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--------YRAVTSAYYR 99 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 99 (237)
++|+++|.+|+|||||+|+|.+..... ...+..+.+.....+.+++ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 489999999999999999999887532 2335555666666677777 6788999999876 2233455678
Q ss_pred CCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCC
Q 026548 100 GALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGD 176 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 176 (237)
.+|++|+|+|+.+..+.. .+..|+.. .+.|+++|+||+|+... .+...++ ..+++. ++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998754332 23334332 37899999999996541 1223333 345654 8999999999
Q ss_pred CHHHHHHHHHH
Q 026548 177 NVDTAFFRLLQ 187 (237)
Q Consensus 177 gi~~~~~~l~~ 187 (237)
|++++|+.+.+
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999998877
No 185
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=5.6e-19 Score=153.50 Aligned_cols=150 Identities=22% Similarity=0.198 Sum_probs=108.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCC-CCCCcceeEEEEEEEECCEEEEEEEEeCCCc--------chhchhhHhhhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFD-SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ--------ERYRAVTSAYYRG 100 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~ 100 (237)
+|+++|.+|+|||||+|+|.+...... ..++.+.+.....+.+++. .+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998775332 2355555666666666764 5889999996 3344455667899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 026548 101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVD 179 (237)
Q Consensus 101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 179 (237)
+|++++|+|+.+..+.... .+...+.. .+.|+++|+||+|+...... ..+ ...+++ +++++||.+|.|++
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 9999999999875433321 22223333 36899999999998653321 222 335666 69999999999999
Q ss_pred HHHHHHHHHHH
Q 026548 180 TAFFRLLQEIY 190 (237)
Q Consensus 180 ~~~~~l~~~i~ 190 (237)
++++++.+.+.
T Consensus 150 ~ll~~i~~~l~ 160 (429)
T TIGR03594 150 DLLDAILELLP 160 (429)
T ss_pred HHHHHHHHhcC
Confidence 99998887663
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=7.9e-19 Score=152.78 Aligned_cols=184 Identities=21% Similarity=0.228 Sum_probs=118.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----------h-h
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA----------V-T 94 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~-~ 94 (237)
..++|+++|.+|+|||||+|+|++..... ...++.+.+.....+..++ ..+.+|||||...... . .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 46999999999999999999999876432 3334444444444555565 3567999999543221 1 1
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH-HHHHH----cCCeEEE
Q 026548 95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV-EFAED----QGLFFSE 169 (237)
Q Consensus 95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~~ 169 (237)
...++.+|++|+|+|++++.+..+. .+...+.. .+.|++|++||+|+..... .++.. ++... ..+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence 2467899999999999987665554 23333333 4689999999999864221 11221 22222 2478999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHhhhcc------ccccCCCccCCCCCCCCCcccc
Q 026548 170 ASALNGDNVDTAFFRLLQEIYGAVSKK------ELECGNGKVDGPPMLAGSKIDV 218 (237)
Q Consensus 170 ~Sa~~~~gi~~~~~~l~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 218 (237)
+||+++.|++++|+.+.+.......+. .+........+||...|+++++
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~ 378 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEAVERHPPPLVKGRRLKI 378 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHHcCCCCCCCCeeeeE
Confidence 999999999999988876544322111 1111122234466666666655
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=6e-19 Score=161.36 Aligned_cols=184 Identities=18% Similarity=0.164 Sum_probs=122.2
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----------hchh-h
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----------YRAV-T 94 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-~ 94 (237)
..++|+++|.+|+|||||+|+|++..... ...++++.+.....+.+++.. +.||||||... +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 35899999999999999999999987532 333555566666666777754 56999999532 2221 1
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH-HHHHc----CCeEEE
Q 026548 95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE-FAEDQ----GLFFSE 169 (237)
Q Consensus 95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~ 169 (237)
...++.+|++++|+|+++..+...+. ++..+.. .++|++||+||+|+.+... .+.... +.... ..++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 23468999999999999987776654 3333333 4789999999999865221 122222 11121 346799
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHhh---hc---cccccCCCccCCCCCCCCCcccc
Q 026548 170 ASALNGDNVDTAFFRLLQEIYGAV---SK---KELECGNGKVDGPPMLAGSKIDV 218 (237)
Q Consensus 170 ~Sa~~~~gi~~~~~~l~~~i~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~ 218 (237)
+||++|.|++++|+.+.+.+.... +. ..+........+||..+|+.+.+
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p~~~g~~~ki 655 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHPLRGGKQPRI 655 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCCccCCeeeeE
Confidence 999999999999999888765421 11 12222222345566666666655
No 188
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=5.8e-19 Score=157.82 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=112.0
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCC--CcC-----CCC------CCcceeEEEEE--EEE---CCEEEEEEEEeCCCcc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNE--FFF-----DSK------STIGVEFQTRT--VTI---NGKIIKAQIWDTAGQE 88 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-----~~~------~~~~~~~~~~~--~~~---~~~~~~~~l~Dt~G~~ 88 (237)
+..+|+++|+.++|||||+.+|+... +.. ... ...+.++.... +.+ ++..+.+.||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45689999999999999999997632 110 000 11122222222 222 4556889999999999
Q ss_pred hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe--
Q 026548 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-- 166 (237)
Q Consensus 89 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-- 166 (237)
.|...+..+++.+|++|+|+|+++....+....|..... .++|+++|+||+|+.... ..+...++....++.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999998655555555544322 378999999999986422 122233444445553
Q ss_pred -EEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 167 -FSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 167 -~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
++.+||++|.|+++++++|.+.+.
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCc
Confidence 899999999999999999887654
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.82 E-value=5.1e-19 Score=132.05 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=103.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-------hhHhhhcCCcEE
Q 026548 33 VIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-------VTSAYYRGALGA 104 (237)
Q Consensus 33 v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~~ 104 (237)
|+|++|+|||||+++|.+.... .......+............ ...+.+||+||...... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987655 23333333333333333331 35688999999766543 344578999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH---HHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE---DAVEFAEDQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 181 (237)
++|+|+.+........ |...... .+.|+++++||+|+......... .........+.+++++|+.++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876665554 3333332 57999999999998753322111 011222334578999999999999999
Q ss_pred HHHHHHH
Q 026548 182 FFRLLQE 188 (237)
Q Consensus 182 ~~~l~~~ 188 (237)
+.++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9988764
No 190
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.81 E-value=2.3e-18 Score=157.37 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=112.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh----------hHhh
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV----------TSAY 97 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~ 97 (237)
.++|+++|++|+|||||+|+|.+........+.++.+.....+..+ ..++.+|||||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4689999999999999999999877644444555555444444434 357889999997665321 2223
Q ss_pred h--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548 98 Y--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG 175 (237)
Q Consensus 98 ~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (237)
+ ..+|++++|+|+++.+. ...|..++.+ .++|+++++||+|+.+.+.. ..+..++.+.++++++++|+.++
T Consensus 81 l~~~~aD~vI~VvDat~ler---~l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLER---NLYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchh---hHHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2 48899999999988543 2234445544 47999999999998754444 34567788889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQEI 189 (237)
Q Consensus 176 ~gi~~~~~~l~~~i 189 (237)
.|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999988877653
No 191
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=3.5e-18 Score=126.97 Aligned_cols=157 Identities=24% Similarity=0.384 Sum_probs=120.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC--------CCC--CcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhH
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFD--------SKS--TIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTS 95 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 95 (237)
-...||+|.|+.++|||||++.+........ +.. ..++........+++. ..+.|++||||++|.-+|.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHHHHH
Confidence 3467999999999999999999988764211 111 1223333333444432 4578999999999999999
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc--CCeEEEEcCC
Q 026548 96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ--GLFFSEASAL 173 (237)
Q Consensus 96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 173 (237)
.++++++++|+++|.+.+..+ .....++.+.... .+|++|++||.|+.. ..+.+.+++..... ..++++++|.
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~ 161 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDAT 161 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeecc
Confidence 999999999999999998887 4444555544432 299999999999987 56788888877765 7899999999
Q ss_pred CCCCHHHHHHHHHHH
Q 026548 174 NGDNVDTAFFRLLQE 188 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~ 188 (237)
.++++.+.+..+..+
T Consensus 162 e~~~~~~~L~~ll~~ 176 (187)
T COG2229 162 EGEGARDQLDVLLLK 176 (187)
T ss_pred cchhHHHHHHHHHhh
Confidence 999999988777655
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.80 E-value=3.6e-18 Score=136.41 Aligned_cols=151 Identities=25% Similarity=0.219 Sum_probs=104.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhHhhhcCCc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTSAYYRGAL 102 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 102 (237)
+|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998764433334444555556666666 567899999965332 12345689999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------HHh-----------
Q 026548 103 GAVVVYDITKRQ-SFDHVARWVEEL-----------------------------------------RAH----------- 129 (237)
Q Consensus 103 ~~ilv~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~~----------- 129 (237)
++++|+|++++. ..+.+...+..+ .++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 333332222110 000
Q ss_pred -------------cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 130 -------------ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 130 -------------~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
....+|+++|+||+|+.. .++...++.. ..++++||+++.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 012478999999999853 3444455443 3589999999999999999887754
No 193
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.80 E-value=1.8e-21 Score=144.01 Aligned_cols=171 Identities=32% Similarity=0.611 Sum_probs=145.5
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE-EEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK-IIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
...++..++.|+|..|+|||+++.+++...+...|..+++.++..+....+.. .++++|||.+|++++..+..-+++.+
T Consensus 20 ~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea 99 (229)
T KOG4423|consen 20 KKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA 99 (229)
T ss_pred chhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC
Confidence 34678899999999999999999999999999999999998887777666543 35788999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcC-CCHHHHHHHHHHcCCe-EEEEcCCCC
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRA-VSAEDAVEFAEDQGLF-FSEASALNG 175 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~ 175 (237)
++.++|||+++..+|+...+|.+.+..... ..+|+|+..||+|+..+-. .......++.+++|+. .+++|++.+
T Consensus 100 ~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken 179 (229)
T KOG4423|consen 100 HGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN 179 (229)
T ss_pred cceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence 999999999999999999999998765432 5688999999999865322 2246777888889875 999999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 026548 176 DNVDTAFFRLLQEIYGAV 193 (237)
Q Consensus 176 ~gi~~~~~~l~~~i~~~~ 193 (237)
.+++|+-..++++++-.-
T Consensus 180 kni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 180 KNIPEAQRELVEKILVND 197 (229)
T ss_pred cChhHHHHHHHHHHHhhc
Confidence 999998888888776443
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=3.8e-18 Score=156.08 Aligned_cols=154 Identities=23% Similarity=0.187 Sum_probs=107.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch--------hchhhHhh
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--------YRAVTSAY 97 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~ 97 (237)
...+|+++|.+|+|||||+|+|++..... ...++++.+........++ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 35789999999999999999999876533 2235555555554555555 4578999999653 23334556
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGD 176 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 176 (237)
+..+|++|+|+|+++.....+ ..|...+.. .++|+++|+||+|+.... ....++. .++. ..+++||++|.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGR 422 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCC
Confidence 789999999999986422211 234444443 579999999999985421 1222222 2332 36799999999
Q ss_pred CHHHHHHHHHHHHHH
Q 026548 177 NVDTAFFRLLQEIYG 191 (237)
Q Consensus 177 gi~~~~~~l~~~i~~ 191 (237)
|++++|++|++.+.+
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999887744
No 195
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.8e-18 Score=145.47 Aligned_cols=148 Identities=22% Similarity=0.172 Sum_probs=110.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc---------hhhHhhh
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR---------AVTSAYY 98 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~ 98 (237)
..|+++|.||+|||||+|+|++....... .|.++.+.......+.+.. +.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999999887654 4888888888888887754 7899999966432 2234467
Q ss_pred cCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCC
Q 026548 99 RGALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNG 175 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 175 (237)
..||++|||+|....-+-. .+..|+. . .+.|+++|+||+|-.. ..+...+|. .+| ..++.+||.+|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr---~---~~kpviLvvNK~D~~~----~e~~~~efy-slG~g~~~~ISA~Hg 150 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR---R---SKKPVILVVNKIDNLK----AEELAYEFY-SLGFGEPVPISAEHG 150 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH---h---cCCCEEEEEEcccCch----hhhhHHHHH-hcCCCCceEeehhhc
Confidence 8999999999998743322 2333333 2 4699999999999652 122233333 445 45899999999
Q ss_pred CCHHHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQEI 189 (237)
Q Consensus 176 ~gi~~~~~~l~~~i 189 (237)
.|+.++++++++.+
T Consensus 151 ~Gi~dLld~v~~~l 164 (444)
T COG1160 151 RGIGDLLDAVLELL 164 (444)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999998888876
No 196
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=3e-18 Score=144.17 Aligned_cols=185 Identities=22% Similarity=0.241 Sum_probs=127.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcch----------hchh-h
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----------YRAV-T 94 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-~ 94 (237)
..++|+++|.||+|||||+|+|++......+ .+.++.+.....+..++.. +.++||+|..+ |... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 5799999999999999999999998876544 3666777777778888864 56999999332 2221 2
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----cCCeEEE
Q 026548 95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----QGLFFSE 169 (237)
Q Consensus 95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~ 169 (237)
...+..+|.+++|+|++.+-+-++. .....+.. .+.+++|++||+|+.+......++..+..+. ..+++++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 3457899999999999987665553 22222333 5789999999999877544445554443332 2367999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHhhhcc-------ccccCCCccCCCCCCCCCcccc
Q 026548 170 ASALNGDNVDTAFFRLLQEIYGAVSKK-------ELECGNGKVDGPPMLAGSKIDV 218 (237)
Q Consensus 170 ~Sa~~~~gi~~~~~~l~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 218 (237)
+||+++.++.++|+.+.+. ++.+..+ .+.......++||...|+.+++
T Consensus 331 iSA~~~~~i~~l~~~i~~~-~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki 385 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEI-YECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKI 385 (444)
T ss_pred EEecCCCChHHHHHHHHHH-HHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEE
Confidence 9999999999999766554 4443322 2222333344344444777665
No 197
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.79 E-value=4.4e-18 Score=143.53 Aligned_cols=158 Identities=23% Similarity=0.230 Sum_probs=117.4
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhh-------
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVT------- 94 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------- 94 (237)
......++|+++|.||+|||||+|+|.+......+ .+.++.++-...+.++| +.+.|.||+|...-....
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeR 289 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIER 289 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHH
Confidence 34445789999999999999999999999887654 48888888888888899 567799999966544332
Q ss_pred -HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCC
Q 026548 95 -SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL 173 (237)
Q Consensus 95 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 173 (237)
...+..||.+++|+|.+.+.+-.+... +. ....+.|+++|.||.|+........ . ....+.+++.+|++
T Consensus 290 s~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~--~---~~~~~~~~i~iSa~ 359 (454)
T COG0486 290 AKKAIEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELES--E---KLANGDAIISISAK 359 (454)
T ss_pred HHHHHHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccch--h---hccCCCceEEEEec
Confidence 345789999999999998633222211 11 2225789999999999976443211 1 11233468999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 026548 174 NGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~i~~~ 192 (237)
++.|++.+.+.|.+.+...
T Consensus 360 t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 360 TGEGLDALREAIKQLFGKG 378 (454)
T ss_pred CccCHHHHHHHHHHHHhhc
Confidence 9999999988888877666
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.79 E-value=4.7e-18 Score=151.02 Aligned_cols=155 Identities=20% Similarity=0.173 Sum_probs=103.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcc----eeEEEEEEE------------ECCEEEEEEEEeCCCcchhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG----VEFQTRTVT------------INGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~----~~~~~~~~~------------~~~~~~~~~l~Dt~G~~~~~ 91 (237)
..-|+++|++++|||||+++|.+..+......+.+ ..+...... +......+.||||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34699999999999999999998876543322222 222111100 00001237899999999999
Q ss_pred hhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC------------CHHHH
Q 026548 92 AVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV------------SAEDA 156 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~------------~~~~~ 156 (237)
.++..+++.+|++++|||+++ +++++.+. .+.. .++|+++++||+|+...+.. ..+.+
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999999999999999999987 44444432 2222 47899999999998642210 00000
Q ss_pred ------------HHHHH------------Hc--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 157 ------------VEFAE------------DQ--GLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 157 ------------~~~~~------------~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
.++.. .+ .++++++||++|+|+++++.+|....
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 11111 11 25799999999999999998876543
No 199
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.79 E-value=4.9e-18 Score=133.05 Aligned_cols=117 Identities=21% Similarity=0.339 Sum_probs=87.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC-cEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA-LGAVVVY 108 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~ilv~ 108 (237)
+|+++|++|||||||+++|....+...+.++ ............+..+.+.|||+||+..++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6999999999999999999998776554333 2222211111113346788999999999999888899998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCC
Q 026548 109 DITKR-QSFDHVARWVEELRAH---ADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 109 d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~vvv~nK~D~~~ 147 (237)
|+.+. .++.....|+..+... ...++|++|++||.|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 6677766655543322 125799999999999864
No 200
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.3e-18 Score=127.54 Aligned_cols=159 Identities=24% Similarity=0.367 Sum_probs=120.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC-------cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEF-------FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG 100 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 100 (237)
...|+++|..++|||||+.++..... +..-.++++....... +.. ..+.+||..|++..+++|..++..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~~--~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VCN--APLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ecc--ceeEEEEcCChHHHHHHHHHHHHH
Confidence 35799999999999999988754321 1122355555444333 333 468899999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHH---HHH---cCCeEEEEcCC
Q 026548 101 ALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEF---AED---QGLFFSEASAL 173 (237)
Q Consensus 101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~---~~~---~~~~~~~~Sa~ 173 (237)
++++|++||+++++-++.....+..+..... .++|+++.+||-|+.+. ....++... +.. ...++..|||.
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 9999999999998888887766666544443 78999999999998652 223333322 232 33679999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 026548 174 NGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~i~~~ 192 (237)
+|.||++..+|+++.+..+
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999988776
No 201
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.78 E-value=8.2e-18 Score=127.07 Aligned_cols=150 Identities=18% Similarity=0.243 Sum_probs=99.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----------hchhhHhhhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----------YRAVTSAYYR 99 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~ 99 (237)
.|+++|.+|+|||||++.|.+..+.....++.+.+.....+..++ .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996655555545555544444444444 678999999432 3344444443
Q ss_pred ---CCcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHH--HcCCeEEEE
Q 026548 100 ---GALGAVVVYDITKRQS--FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAE--DQGLFFSEA 170 (237)
Q Consensus 100 ---~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 170 (237)
..+++++++|.....+ ...+..|+.. .+.|+++++||+|+...... .......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 4578899999876532 2223344333 25899999999998542211 1112222222 234579999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 026548 171 SALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 171 Sa~~~~gi~~~~~~l~~~ 188 (237)
|++++.++++++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999988765
No 202
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.77 E-value=5.3e-18 Score=147.01 Aligned_cols=154 Identities=19% Similarity=0.154 Sum_probs=103.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC--CCcC-----------------------------CCCCCcceeEEEEEEEECC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFFF-----------------------------DSKSTIGVEFQTRTVTING 74 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 74 (237)
...++|+++|+.++|||||+.+|+.. .... ....+.+.+.....+..+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~- 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD- 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC-
Confidence 34689999999999999999999752 1110 112344444444444444
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcC---
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMRA--- 150 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--- 150 (237)
.+.+.||||||++.|.......+..+|++|+|+|+++..+..... .+...+.... ...|++|++||+|+.....
T Consensus 84 -~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 -KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred -CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHH
Confidence 467899999999988776666788999999999999874321111 1111122222 2357899999999864211
Q ss_pred -CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q 026548 151 -VSAEDAVEFAEDQG-----LFFSEASALNGDNVDTAF 182 (237)
Q Consensus 151 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~ 182 (237)
...+++.++++..+ ++++++||++|.|+.+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 11345556666665 569999999999998754
No 203
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=1.9e-17 Score=137.41 Aligned_cols=172 Identities=20% Similarity=0.189 Sum_probs=128.4
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh---------chhh
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY---------RAVT 94 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~ 94 (237)
.......|.++|..|+|||||+|+|++........-..+.+.+.+.+.+.+. ..+.+.||.|.-.. .+..
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHHHH
Confidence 3445679999999999999999999988776666666667777788878742 35779999994432 2222
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC
Q 026548 95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN 174 (237)
Q Consensus 95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 174 (237)
.....+|++++|+|++++.....+....+.+....-..+|+|+|.||+|+..+.. .........-..+.+||++
T Consensus 267 -EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~ 340 (411)
T COG2262 267 -EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKT 340 (411)
T ss_pred -HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEecc
Confidence 2347899999999999998888887777777777556799999999999765332 1122222221589999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhccccccCC
Q 026548 175 GDNVDTAFFRLLQEIYGAVSKKELECGN 202 (237)
Q Consensus 175 ~~gi~~~~~~l~~~i~~~~~~~~~~~~~ 202 (237)
|.|++.+++.|.+.+...+.......+.
T Consensus 341 ~~gl~~L~~~i~~~l~~~~~~~~l~lp~ 368 (411)
T COG2262 341 GEGLDLLRERIIELLSGLRTEVTLELPY 368 (411)
T ss_pred CcCHHHHHHHHHHHhhhcccceEEEcCc
Confidence 9999999998888888777655544443
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.77 E-value=5.7e-18 Score=133.25 Aligned_cols=146 Identities=26% Similarity=0.258 Sum_probs=94.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCC-------------------------------CCCCcceeEEEEEEEECCEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFD-------------------------------SKSTIGVEFQTRTVTINGKIIK 78 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 78 (237)
+|+|+|++|+|||||+++|+...-... .....+.+.....+..++ .+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 689999999999999999975332111 012233333333343444 46
Q ss_pred EEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC----CHH
Q 026548 79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV----SAE 154 (237)
Q Consensus 79 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~----~~~ 154 (237)
+.||||||++.+.......++.+|++|+|+|+++...... ......+... ...++++|+||+|+...... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 7899999998887666677899999999999987532222 1222222221 12357789999998642211 122
Q ss_pred HHHHHHHHcCC---eEEEEcCCCCCCHHH
Q 026548 155 DAVEFAEDQGL---FFSEASALNGDNVDT 180 (237)
Q Consensus 155 ~~~~~~~~~~~---~~~~~Sa~~~~gi~~ 180 (237)
+..++....+. +++.+||++|.|+.+
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 34455556663 489999999999885
No 205
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.77 E-value=6.3e-18 Score=146.53 Aligned_cols=153 Identities=20% Similarity=0.192 Sum_probs=100.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-------------------------------CCCCCcceeEEEEEEEECC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-------------------------------DSKSTIGVEFQTRTVTING 74 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 74 (237)
...++|+++|++++|||||+++|+...-.. ...+.++.+.....+..+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~- 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD- 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence 346899999999999999999998432110 112334444444444444
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC---
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIILIGNKSDLVDMRA--- 150 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--- 150 (237)
.+.+.||||||++.|.......+..+|++|+|+|+++...... ...++..+.. . ...|++|++||+|+.....
T Consensus 83 -~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~-~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 -KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-L-GINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred -CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-c-CCCeEEEEEEccccccccHHHH
Confidence 4678999999998887655566789999999999987211211 1122222222 2 1246899999999864211
Q ss_pred -CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q 026548 151 -VSAEDAVEFAEDQG-----LFFSEASALNGDNVDTAF 182 (237)
Q Consensus 151 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~ 182 (237)
...+++.+++...+ ++++++||++|.|+++.+
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11234555555555 469999999999998754
No 206
>PRK10218 GTP-binding protein; Provisional
Probab=99.77 E-value=2.3e-17 Score=147.11 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=110.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhc--CCCcCCC------------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTK--NEFFFDS------------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA 92 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 92 (237)
...+|+++|+.++|||||+++|+. +.+.... ....+.++..+...+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 356899999999999999999986 3322211 12344555555555555557899999999999999
Q ss_pred hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-CCHHHHHHHHH-------HcC
Q 026548 93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-VSAEDAVEFAE-------DQG 164 (237)
Q Consensus 93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-~~~~~~~~~~~-------~~~ 164 (237)
.+..+++.+|++|+|+|+.+..... ...++..+.. .++|.+|++||+|+...+. ...+++.++.. ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 9999999999999999998753222 2333333333 4789999999999864321 11233333332 234
Q ss_pred CeEEEEcCCCCC----------CHHHHHHHHHHHH
Q 026548 165 LFFSEASALNGD----------NVDTAFFRLLQEI 189 (237)
Q Consensus 165 ~~~~~~Sa~~~~----------gi~~~~~~l~~~i 189 (237)
++++.+||.+|. ++..+|+.+++.+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 679999999998 4777776665554
No 207
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.77 E-value=3.2e-17 Score=130.81 Aligned_cols=182 Identities=20% Similarity=0.178 Sum_probs=120.2
Q ss_pred hhhhcccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh---
Q 026548 14 HQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY--- 90 (237)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--- 90 (237)
....+...+....+.++|+|+|.||+|||||.|.+++.++.+.+....+++.....+...+. .++.|+||||.-..
T Consensus 58 pa~~esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~ 136 (379)
T KOG1423|consen 58 PAALESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMH 136 (379)
T ss_pred cccccCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchh
Confidence 33445555567778999999999999999999999999998888766666666555555554 58999999992211
Q ss_pred ---------chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------
Q 026548 91 ---------RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR------------ 149 (237)
Q Consensus 91 ---------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------ 149 (237)
-......+..||.+++|+|+++....-. -..++.+..+. .+|-++|+||.|.....
T Consensus 137 r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~ 213 (379)
T KOG1423|consen 137 RRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTN 213 (379)
T ss_pred hhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccc
Confidence 1112334678999999999996322111 23334455553 68999999999975421
Q ss_pred -CCC---HHHHHHHHHH---------cCC----eEEEEcCCCCCCHHHHHHHHHHHHHHhhhccccccCCC
Q 026548 150 -AVS---AEDAVEFAED---------QGL----FFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203 (237)
Q Consensus 150 -~~~---~~~~~~~~~~---------~~~----~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~~ 203 (237)
+++ .+...+|... .|. .+|.+||++|.||+++-++| +.+.+..+|+....
T Consensus 214 g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyL----msqa~~gpW~y~a~ 280 (379)
T KOG1423|consen 214 GELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYL----MSQAPPGPWKYPAD 280 (379)
T ss_pred cccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHH----HhcCCCCCCCCCcc
Confidence 111 1111122111 111 28999999999999766555 45556666665443
No 208
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.76 E-value=3e-17 Score=146.35 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=102.0
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE------CCEE-----E-----EEEEEeCCCcchh
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI------NGKI-----I-----KAQIWDTAGQERY 90 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~-----~~~l~Dt~G~~~~ 90 (237)
+...|+++|++++|||||+++|.+..+........+.+.....+.. .+.. + .+.||||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 3457999999999999999999877654333222221111111111 0111 1 1679999999999
Q ss_pred chhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC------------HHH
Q 026548 91 RAVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS------------AED 155 (237)
Q Consensus 91 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~------------~~~ 155 (237)
..++...+..+|++++|+|+++ ++++..+. .+.. .++|+++++||+|+...+... ...
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9988888999999999999987 55554443 2222 478999999999985322100 000
Q ss_pred -----------HHHHHHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 156 -----------AVEFAEDQ---------------GLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 156 -----------~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
........ .++++++||.+|.|+++++..+....
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 11111111 25689999999999999998876543
No 209
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.76 E-value=1.4e-17 Score=148.60 Aligned_cols=158 Identities=15% Similarity=0.204 Sum_probs=109.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC--CCcCCC------------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhh
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN--EFFFDS------------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVT 94 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 94 (237)
.+|+++|+.++|||||+++|+.. .+.... ....+.+...+...+....+++.||||||+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 37999999999999999999863 221111 0112233333333333334788999999999999999
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-CCHHHHHHHHH-------HcCCe
Q 026548 95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-VSAEDAVEFAE-------DQGLF 166 (237)
Q Consensus 95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 166 (237)
...++.+|++++|+|+.+.. ......|+..+.. .++|++|++||+|+...+. ...++..++.. ...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999998742 2334556565554 4789999999999865321 11233333332 23568
Q ss_pred EEEEcCCCCC----------CHHHHHHHHHHHHH
Q 026548 167 FSEASALNGD----------NVDTAFFRLLQEIY 190 (237)
Q Consensus 167 ~~~~Sa~~~~----------gi~~~~~~l~~~i~ 190 (237)
++.+||++|. |+..+|+.+++.+.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 9999999996 78888887776653
No 210
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=5.4e-17 Score=129.86 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=79.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCC------------------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFD------------------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 91 (237)
+|+++|++|+|||||+++|+...-... .....+.......+..++ .++.+|||||+..|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 589999999999999999975421100 001112222223333344 678999999999998
Q ss_pred hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
..+..+++.+|++++|+|+.+.... ....++..+.. .++|+++++||+|+..
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence 8888999999999999999886432 33455555544 4789999999999863
No 211
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.75 E-value=4.1e-17 Score=146.21 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=106.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC---CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE---FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
-|+++|+.++|||||+++|.+.. +.......++.+.....+...+. ..+.||||||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 48899999999999999999643 33333345555554444433322 347899999999997777777899999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC--CHHHHHHHHHHcC---CeEEEEcCCCCCC
Q 026548 107 VYDITK---RQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV--SAEDAVEFAEDQG---LFFSEASALNGDN 177 (237)
Q Consensus 107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~g 177 (237)
|+|+++ +++.+.+ ..+.. .++| ++||+||+|+.+.... ..+++.++....+ .+++++||++|.|
T Consensus 81 VVda~eg~~~qT~ehl----~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 999987 3333332 22222 2456 5799999998653211 1234555555444 6799999999999
Q ss_pred HHHHHHHHHHHH
Q 026548 178 VDTAFFRLLQEI 189 (237)
Q Consensus 178 i~~~~~~l~~~i 189 (237)
++++++.|....
T Consensus 154 I~~L~~~L~~~~ 165 (614)
T PRK10512 154 IDALREHLLQLP 165 (614)
T ss_pred CHHHHHHHHHhh
Confidence 999998887654
No 212
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.75 E-value=3e-17 Score=119.33 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=99.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----cchhchhhHhhhcCCcEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----QERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~~i 105 (237)
||+++|+.|||||||+++|.+... .+..|.... +.+ .++|||| +..+..........+|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998764 222232222 122 2689999 4455666666678999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAFFR 184 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~ 184 (237)
++.|++++.+.-. ..+... .+.|+|-|+||+|+... ..+.+.++++.+..|+. +|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998643211 112222 35899999999999732 34677888888888875 899999999999999887
Q ss_pred HH
Q 026548 185 LL 186 (237)
Q Consensus 185 l~ 186 (237)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 64
No 213
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=7.4e-17 Score=125.34 Aligned_cols=146 Identities=21% Similarity=0.153 Sum_probs=96.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCc----------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFF----------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 91 (237)
.++|+++|+.++|||||+++|+..... .......+.+ .....+.....++.|+||||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITIN--TAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEE--eeeeEecCCCeEEEEEECcCHHHHH
Confidence 478999999999999999999753100 0011222333 3333333334578899999999888
Q ss_pred hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHcC---
Q 026548 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQG--- 164 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~--- 164 (237)
......+..+|++++|+|+...-... ....+..+.. .++| +++++||+|+..+.+. ..+++.++....+
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 77777889999999999998743222 2223333333 3566 7789999998532221 1223445554443
Q ss_pred --CeEEEEcCCCCCCHH
Q 026548 165 --LFFSEASALNGDNVD 179 (237)
Q Consensus 165 --~~~~~~Sa~~~~gi~ 179 (237)
++++++||.+|.++.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 679999999998853
No 214
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.75 E-value=2.3e-17 Score=141.97 Aligned_cols=161 Identities=19% Similarity=0.165 Sum_probs=103.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcC---CCCCCcceeEEEEE--------------EEE----CC------EEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF---DSKSTIGVEFQTRT--------------VTI----NG------KIIKA 79 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~--------------~~~----~~------~~~~~ 79 (237)
..++|+++|++++|||||+++|.+...+. ......+....... ++. ++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999997542211 11111111111000 001 11 13568
Q ss_pred EEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHH
Q 026548 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAV 157 (237)
Q Consensus 80 ~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~ 157 (237)
.+||+||++.|...+...+..+|++++|+|+++..........+..+... ...|++|++||+|+...... ..+++.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 89999999999888888888999999999998643111122222222221 12468999999998653211 123344
Q ss_pred HHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 158 EFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 158 ~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
++.... +++++++||++|.|+++++++|...+
T Consensus 161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 444433 57899999999999999998888754
No 215
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.74 E-value=3.4e-17 Score=140.91 Aligned_cols=163 Identities=20% Similarity=0.191 Sum_probs=102.4
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCc---CCCCCCcceeEEEEEEE------------------EC--C----EE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFF---FDSKSTIGVEFQTRTVT------------------IN--G----KI 76 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~------------------~~--~----~~ 76 (237)
.....++|+++|+.++|||||+.+|.+.-.+ .......+......... ++ + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 3445689999999999999999999653211 11112222221110000 01 1 02
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SA 153 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~ 153 (237)
..+.||||||++.|..........+|++++|+|++++. ....... +..+... ...|+++|+||+|+...... ..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 47899999999988776666667789999999999642 1111111 1222221 12468999999998653221 12
Q ss_pred HHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 154 EDAVEFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 154 ~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
+++.+++... +.+++++||+++.|++++++.|...+
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 3344444332 47899999999999999998887765
No 216
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.4e-16 Score=121.00 Aligned_cols=161 Identities=18% Similarity=0.208 Sum_probs=111.9
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----------cchhch
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----------QERYRA 92 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~ 92 (237)
.+.+...-|+++|.+|+|||||||+|++++-......+.|.+.....+.+++. +.++|.|| .+.+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 44456778999999999999999999998754545566667777777777764 67999999 445556
Q ss_pred hhHhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc----CC
Q 026548 93 VTSAYYR---GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ----GL 165 (237)
Q Consensus 93 ~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~----~~ 165 (237)
+...|+. +..++++++|+..+..-.+. ..++.+.. .++|++|++||+|.....+... .....+... ..
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k-~l~~v~~~l~~~~~~ 170 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNK-QLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHH-HHHHHHHHhcCCCCc
Confidence 6666664 45778999999885443222 22333333 5899999999999876433321 122223222 22
Q ss_pred e--EEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548 166 F--FSEASALNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 166 ~--~~~~Sa~~~~gi~~~~~~l~~~i~~ 191 (237)
. ++.+|+.++.|++++...|.+.+.+
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2 7788999999999988888776543
No 217
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.74 E-value=2.6e-17 Score=116.78 Aligned_cols=153 Identities=23% Similarity=0.372 Sum_probs=115.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
.+.+||+++|-.++|||||+..|.+... ..-.+|.++ ..+.+..++ .+.+.+||.+|+...+..|..|+.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GF--n~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGF--NTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCc--ceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 5679999999999999999999887653 223355554 344454554 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--------CeEEEEcCCCCC
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--------LFFSEASALNGD 176 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~ 176 (237)
||+|.++..-|+.+...+-++....+ ..+|++|..||-|+.- ... +.+++.+.+ ..+-+|||.+++
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt--aa~---~eeia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT--AAK---VEEIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh--hcc---hHHHHHhcchhhhhhceEEeeeCcccccc
Confidence 99999998888887665555544443 7899999999999754 222 222333222 236779999999
Q ss_pred CHHHHHHHHHH
Q 026548 177 NVDTAFFRLLQ 187 (237)
Q Consensus 177 gi~~~~~~l~~ 187 (237)
|+.+-.+|+..
T Consensus 166 g~~dg~~wv~s 176 (185)
T KOG0074|consen 166 GSTDGSDWVQS 176 (185)
T ss_pred CccCcchhhhc
Confidence 98887777654
No 218
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.74 E-value=1.1e-17 Score=143.39 Aligned_cols=164 Identities=24% Similarity=0.299 Sum_probs=124.1
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...+||+|+|+.|+||||||-+|....+.+...+-...-..+..++-+. +.+.|+|++.....+......++.||+++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEEE
Confidence 3478999999999999999999999998776543322111112222223 45789999877666666778899999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHH-HHHHHHHcC-Ce-EEEEcCCCCCCHH
Q 026548 106 VVYDITKRQSFDHV-ARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAED-AVEFAEDQG-LF-FSEASALNGDNVD 179 (237)
Q Consensus 106 lv~d~~~~~s~~~~-~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~-~~~~~~~~~-~~-~~~~Sa~~~~gi~ 179 (237)
++|+++++.+++.+ .+|+..++...+ .++|+|+|+||.|.......+.+. ...+...+. +. .++|||++-.++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS 164 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence 99999999999998 679999988775 689999999999987644443343 444444443 32 7899999999999
Q ss_pred HHHHHHHHHHHH
Q 026548 180 TAFFRLLQEIYG 191 (237)
Q Consensus 180 ~~~~~l~~~i~~ 191 (237)
++|+...+.+..
T Consensus 165 e~fYyaqKaVih 176 (625)
T KOG1707|consen 165 ELFYYAQKAVIH 176 (625)
T ss_pred hhhhhhhheeec
Confidence 999887776543
No 219
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2.6e-16 Score=127.13 Aligned_cols=165 Identities=19% Similarity=0.161 Sum_probs=119.9
Q ss_pred CCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc---------chhc
Q 026548 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ---------ERYR 91 (237)
Q Consensus 21 ~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~ 91 (237)
.+........|+|.|.||+|||||++.+.+.+......|.++.......+..++ .+++++||||. +...
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHH
Confidence 344555688999999999999999999999887766667776666666666555 56889999991 1122
Q ss_pred hhhHhhhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEE
Q 026548 92 AVTSAYYRGALGAVVVYDITK--RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFS 168 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (237)
.....+-+-.++++|+||.+. ..+.+....+++.+.... +.|+++|+||+|....+ ..+++.......+. ...
T Consensus 239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e--~~~~~~~~~~~~~~~~~~ 314 (346)
T COG1084 239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEE--KLEEIEASVLEEGGEEPL 314 (346)
T ss_pred HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchh--HHHHHHHHHHhhcccccc
Confidence 233344456788999999986 567788888888888886 38999999999987532 23344444444443 377
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHH
Q 026548 169 EASALNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 169 ~~Sa~~~~gi~~~~~~l~~~i~~ 191 (237)
.+++..+.+++.+-..+.....+
T Consensus 315 ~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 315 KISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred ceeeeehhhHHHHHHHHHHHhhc
Confidence 88888898888777666665433
No 220
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=9.9e-18 Score=119.25 Aligned_cols=158 Identities=23% Similarity=0.356 Sum_probs=115.2
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
...+|+++|-.|+||||++-++.-.+... ..|++++.... + ..+..++++||..|+-..+..|+.|+.+.|++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve~--v--~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVET--V--PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCccc--c--ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 56789999999999999998877666433 34666655433 2 2355789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH-----HHHHHcCCeEEEEcCCCCCCHHH
Q 026548 107 VYDITKRQSFDHVARWVEEL-RAHADSSIRIILIGNKSDLVDMRAVSAEDAV-----EFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
|+|.+|.+-.......+..+ .+....+..++|++||.|..... ...++. +-.+..-+.++++||.+|.|+++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 99999976554443333333 22222457788999999986522 222221 22223336699999999999999
Q ss_pred HHHHHHHHHHH
Q 026548 181 AFFRLLQEIYG 191 (237)
Q Consensus 181 ~~~~l~~~i~~ 191 (237)
+++||.+.+-.
T Consensus 170 ~~DWL~~~l~~ 180 (182)
T KOG0072|consen 170 AMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.72 E-value=6e-17 Score=128.39 Aligned_cols=146 Identities=21% Similarity=0.170 Sum_probs=92.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCc-------------------------------CCCCCCcceeEEEEEEEECCEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFF-------------------------------FDSKSTIGVEFQTRTVTINGKIIK 78 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 78 (237)
+|+++|++++|||||+.+|+...-. .......+.+.....+...+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 5899999999999999998632100 00112233333344444444 67
Q ss_pred EEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhh------HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--cC
Q 026548 79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS------FDHVARWVEELRAHADSSIRIILIGNKSDLVDM--RA 150 (237)
Q Consensus 79 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~--~~ 150 (237)
+.+|||||+..+...+...++.+|++|+|+|+++... .......+...... ...|++|++||+|+... ..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccH
Confidence 8899999998887777777889999999999987421 11111222222221 23689999999998731 11
Q ss_pred CC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 026548 151 VS----AEDAVEFAEDQG-----LFFSEASALNGDNVD 179 (237)
Q Consensus 151 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~ 179 (237)
.. .+++.++....+ ++++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 122223344443 569999999999987
No 222
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.72 E-value=8e-17 Score=127.19 Aligned_cols=113 Identities=21% Similarity=0.335 Sum_probs=79.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCC-----------------CCCcceeEEEEEEE--E---CCEEEEEEEEeCCCc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDS-----------------KSTIGVEFQTRTVT--I---NGKIIKAQIWDTAGQ 87 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~l~Dt~G~ 87 (237)
+|+|+|+.++|||||+++|+........ ....+.......+. . ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6999999999999999999875433210 00111122112221 1 345678999999999
Q ss_pred chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146 (237)
Q Consensus 88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 146 (237)
..+......++..+|++|+|+|+.+..+... ..|+..... .++|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999987655432 334444332 358999999999975
No 223
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=1.4e-16 Score=127.88 Aligned_cols=157 Identities=16% Similarity=0.178 Sum_probs=116.9
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhh-------Hhhhc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVT-------SAYYR 99 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~ 99 (237)
....|.++|-||+|||||+++|...+......+.++.......+..++. .++.+-|.||..+-..+. -..+.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHH
Confidence 3457899999999999999999988865555566666666565555543 348899999955443322 23457
Q ss_pred CCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCC
Q 026548 100 GALGAVVVYDITKR---QSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASAL 173 (237)
Q Consensus 100 ~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~ 173 (237)
+++.++||+|++.. ..|+.+..+..++..+.+ .+.|.+||+||+|+++.. .+...++++.+.-+ ++++||+
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~ 350 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAK 350 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeec
Confidence 89999999999997 788888777777655544 678999999999985311 22246677777655 9999999
Q ss_pred CCCCHHHHHHHHHH
Q 026548 174 NGDNVDTAFFRLLQ 187 (237)
Q Consensus 174 ~~~gi~~~~~~l~~ 187 (237)
.++|+.+++..|.+
T Consensus 351 ~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 351 SGEGLEELLNGLRE 364 (366)
T ss_pred cccchHHHHHHHhh
Confidence 99999998877654
No 224
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.1e-16 Score=137.66 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=117.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch------hchhhHhh-h-c
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER------YRAVTSAY-Y-R 99 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~~~-~-~ 99 (237)
.++|+++|+||+|||||+|+|++........|.++.+.....+...+.. +++.|.||--. .....+++ + .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 3469999999999999999999999888888998888888788777754 77999999222 12223333 3 4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
..|++|-|+|+++.+-. -+.-.++.+ -+.|++++.|++|...++.+.. +..++.+.+|+|+++++|++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeRn---LyltlQLlE---~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERN---LYLTLQLLE---LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHH---HHHHHHHHH---cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCHH
Confidence 66999999999885422 122233333 4799999999999876554433 4667888999999999999999999
Q ss_pred HHHHHHHHHH
Q 026548 180 TAFFRLLQEI 189 (237)
Q Consensus 180 ~~~~~l~~~i 189 (237)
++...+.+..
T Consensus 154 ~l~~~i~~~~ 163 (653)
T COG0370 154 ELKRAIIELA 163 (653)
T ss_pred HHHHHHHHhc
Confidence 9888877643
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.70 E-value=4.7e-16 Score=133.40 Aligned_cols=144 Identities=18% Similarity=0.129 Sum_probs=94.1
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCc----------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFF----------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY 90 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 90 (237)
..++|+++|+.++|||||+++|++.... .......+.+. ....+.....++.|+||||++.|
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHHH
Confidence 3689999999999999999999863110 00122333333 33334333356789999999988
Q ss_pred chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCCC---HHHHHHHHHHcC--
Q 026548 91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAVS---AEDAVEFAEDQG-- 164 (237)
Q Consensus 91 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~---~~~~~~~~~~~~-- 164 (237)
.......+..+|++++|+|++....... ..++..+.. .++| ++|++||+|+..+.+.. .+++.++....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 7766667789999999999987422222 222233333 3677 67889999986432221 224455555554
Q ss_pred ---CeEEEEcCCCCC
Q 026548 165 ---LFFSEASALNGD 176 (237)
Q Consensus 165 ---~~~~~~Sa~~~~ 176 (237)
++++++||.+|.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 165 GDDIPVIRGSALKAL 179 (394)
T ss_pred cCCccEEEeeccccc
Confidence 579999999983
No 226
>PRK12735 elongation factor Tu; Reviewed
Probab=99.69 E-value=7.7e-16 Score=132.14 Aligned_cols=145 Identities=19% Similarity=0.120 Sum_probs=94.0
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC-------CCc---------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN-------EFF---------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 89 (237)
.+.++|+++|++++|||||+++|++. .+. .......+.+. ....+.....++.|+||||++.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHH
Confidence 34689999999999999999999862 100 00112333333 3333333335678999999998
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcCC---CHHHHHHHHHHcC-
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRII-LIGNKSDLVDMRAV---SAEDAVEFAEDQG- 164 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~---~~~~~~~~~~~~~- 164 (237)
|.......+..+|++++|+|+.+..... ...++..+.. .++|.+ +++||+|+..+.+. ..+++.++...++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 8777777788999999999998743222 2223333332 367865 57999998642221 1224445555543
Q ss_pred ----CeEEEEcCCCCC
Q 026548 165 ----LFFSEASALNGD 176 (237)
Q Consensus 165 ----~~~~~~Sa~~~~ 176 (237)
++++++||.++.
T Consensus 164 ~~~~~~ii~~Sa~~g~ 179 (396)
T PRK12735 164 PGDDTPIIRGSALKAL 179 (396)
T ss_pred CcCceeEEecchhccc
Confidence 679999999985
No 227
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.69 E-value=2.3e-16 Score=124.81 Aligned_cols=165 Identities=19% Similarity=0.284 Sum_probs=104.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-----hhHhhhcCCcE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-----VTSAYYRGALG 103 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~ 103 (237)
||+++|+.+|||||+.+.+..+..+.... -..+.+.....+...+. +.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999988876543332 11223333334433432 5789999999876544 35677899999
Q ss_pred EEEEEECCChhhHHHHH---HHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CC----CHHHHHHHHHHcC---CeEEEEc
Q 026548 104 AVVVYDITKRQSFDHVA---RWVEELRAHADSSIRIILIGNKSDLVDMR--AV----SAEDAVEFAEDQG---LFFSEAS 171 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~---~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~----~~~~~~~~~~~~~---~~~~~~S 171 (237)
+|||+|+.+.+..+.+. ..+..+.... +++.+.|+++|+|+..+. .. ..+.+.+.+...+ +.++.||
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999999544444444 4444444544 689999999999986421 11 1222333444455 6788899
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccc
Q 026548 172 ALNGDNVDTAFFRLLQEIYGAVSKKE 197 (237)
Q Consensus 172 a~~~~gi~~~~~~l~~~i~~~~~~~~ 197 (237)
..+ ..+-++|..+++.+..+.+.-+
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~le 183 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLSTLE 183 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCCCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHHHH
Confidence 777 6899999999888877766543
No 228
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.4e-15 Score=130.16 Aligned_cols=150 Identities=20% Similarity=0.271 Sum_probs=118.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC-EEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-KIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
.+=|.++|+..-|||||+..+...+........++.+..-..+..+- ....+.|+|||||+.|..+..+-..-+|.+||
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 44589999999999999999999998888778888777777777751 12358899999999999999999999999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC---------CeEEEEcCCC
Q 026548 107 VYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG---------LFFSEASALN 174 (237)
Q Consensus 107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~ 174 (237)
|+++++ +++.+.+ +..+. .++|++|++||+|.++ .+++....-..++| ..++.+||++
T Consensus 85 VVa~dDGv~pQTiEAI----~hak~---a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 85 VVAADDGVMPQTIEAI----NHAKA---AGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEccCCcchhHHHHH----HHHHH---CCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 999998 5555444 22222 5899999999999874 33444444333333 3589999999
Q ss_pred CCCHHHHHHHHHH
Q 026548 175 GDNVDTAFFRLLQ 187 (237)
Q Consensus 175 ~~gi~~~~~~l~~ 187 (237)
|.|+++++..+.-
T Consensus 155 g~Gi~eLL~~ill 167 (509)
T COG0532 155 GEGIDELLELILL 167 (509)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999976544
No 229
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.68 E-value=1.5e-15 Score=123.51 Aligned_cols=115 Identities=19% Similarity=0.178 Sum_probs=78.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC---------C-----------CcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK---------S-----------TIGVEFQTRTVTINGKIIKAQIWDTAGQE 88 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 88 (237)
.+|+|+|++|+|||||+++|+...-..... . ..+.........+....+++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997532110000 0 01122223333333344788999999999
Q ss_pred hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 89 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
.|.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 9888777788999999999999875322 22334433322 4789999999999865
No 230
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.68 E-value=1.3e-15 Score=120.74 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=94.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCC-----------------------cceeEEE---------------EEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKST-----------------------IGVEFQT---------------RTVT 71 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~---------------~~~~ 71 (237)
||+++|+.++|||||+++|..+.+....... .+.+... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999976554321100 0000000 0011
Q ss_pred ECCEEEEEEEEeCCCcchhchhhHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548 72 INGKIIKAQIWDTAGQERYRAVTSAYYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149 (237)
Q Consensus 72 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 149 (237)
.. ...+.++||||++.|.......+. .+|++++|+|+.....- ....++..+.. .++|+++++||+|+....
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA---LNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence 11 246889999999988765544443 78999999998875432 22333333333 468999999999985422
Q ss_pred CC--CHHHHHHHHHH--------------------------cCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 150 AV--SAEDAVEFAED--------------------------QGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 150 ~~--~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
.. ..++..++... ..+++|.+|+.+|.|+++++..|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11 12222222221 124799999999999998886653
No 231
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.68 E-value=1.1e-15 Score=131.17 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=95.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCC----------------cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEF----------------FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 89 (237)
.+.++|+++|+.++|||||+++|++... ........+.+. ..+.+.....++.||||||++.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchHH
Confidence 4468999999999999999999974210 001113333333 3344443445788999999999
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcCCC---HHHHHHHHHHcC-
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRII-LIGNKSDLVDMRAVS---AEDAVEFAEDQG- 164 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~~---~~~~~~~~~~~~- 164 (237)
|.......+..+|++++|+|+++....+. ...+..+.. .++|.+ +++||+|+.++.+.. .+++.+++...+
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 87766666788999999999987322222 122233332 357755 689999986532211 234556666654
Q ss_pred ----CeEEEEcCCCCC
Q 026548 165 ----LFFSEASALNGD 176 (237)
Q Consensus 165 ----~~~~~~Sa~~~~ 176 (237)
++++++||.++.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 689999999874
No 232
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=4.1e-15 Score=116.02 Aligned_cols=157 Identities=11% Similarity=0.125 Sum_probs=91.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcce---eEEEEEEEECCEEEEEEEEeCCCcchhchhhHh-----hhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGV---EFQTRTVTINGKIIKAQIWDTAGQERYRAVTSA-----YYRG 100 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~~ 100 (237)
++|+++|.+|+|||||+|+|.+.........+.+. ......+.... ...+.+|||||.......... .+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 68999999999999999999986654322222111 11111111111 235789999996543222222 2567
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-----------CCHHHHHHHHH----HcC-
Q 026548 101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-----------VSAEDAVEFAE----DQG- 164 (237)
Q Consensus 101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-----------~~~~~~~~~~~----~~~- 164 (237)
+|+++++.+. ... ..-..|+..+... +.|+++|+||+|+..... ...+..++.+. ..+
T Consensus 81 ~d~~l~v~~~-~~~--~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISST-RFS--SNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeCC-CCC--HHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 8988887542 211 2223455555443 579999999999843111 01111222221 222
Q ss_pred -C-eEEEEcCC--CCCCHHHHHHHHHHHHHHh
Q 026548 165 -L-FFSEASAL--NGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 165 -~-~~~~~Sa~--~~~gi~~~~~~l~~~i~~~ 192 (237)
. ++|.+|+. .+.++..+.+.++..+.++
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 2 48999998 5678888777777776543
No 233
>CHL00071 tufA elongation factor Tu
Probab=99.66 E-value=2.8e-15 Score=129.24 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=96.7
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCc----------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFF----------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 88 (237)
....++|+++|++++|||||+++|++..-. .......+.+. ....+.....++.|+||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChH
Confidence 344689999999999999999999864211 01112323332 223333333567899999999
Q ss_pred hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHcC
Q 026548 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQG 164 (237)
Q Consensus 89 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~ 164 (237)
.|.......+..+|++++|+|+.....-. ....+..+.. .++| +++++||+|+....+. ..+++.++....+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 88777777788999999999998643222 2222333332 3678 6789999998653221 1224455555543
Q ss_pred -----CeEEEEcCCCCCCH
Q 026548 165 -----LFFSEASALNGDNV 178 (237)
Q Consensus 165 -----~~~~~~Sa~~~~gi 178 (237)
++++.+||.+|.++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 67999999988743
No 234
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.66 E-value=2.9e-15 Score=122.40 Aligned_cols=141 Identities=16% Similarity=0.260 Sum_probs=93.8
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC----------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD----------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA---- 92 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---- 92 (237)
..++|+|+|.+|+|||||+|+|++..+... ..++.........+..++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999877544 234444555555666678888999999999432211
Q ss_pred ---h-------------------hHhhhc--CCcEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548 93 ---V-------------------TSAYYR--GALGAVVVYDITKR--QSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146 (237)
Q Consensus 93 ---~-------------------~~~~~~--~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 146 (237)
+ ....+. .+|+++++++.+.. ..++ ...+..+ . ..+|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D--~~~lk~l---~-~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD--IEFMKRL---S-KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH--HHHHHHH---h-ccCCEEEEEECCCcC
Confidence 0 001222 57888888887641 1111 2222323 2 268999999999985
Q ss_pred CC--cCCCHHHHHHHHHHcCCeEEEEcCC
Q 026548 147 DM--RAVSAEDAVEFAEDQGLFFSEASAL 173 (237)
Q Consensus 147 ~~--~~~~~~~~~~~~~~~~~~~~~~Sa~ 173 (237)
.. .......+.+.+..+++++|.....
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 42 2233556777788899998887653
No 235
>PLN03126 Elongation factor Tu; Provisional
Probab=99.66 E-value=5.2e-15 Score=129.04 Aligned_cols=148 Identities=15% Similarity=0.083 Sum_probs=97.6
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCC----------------cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEF----------------FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 87 (237)
.....++|+++|++++|||||+++|+.... ........+.+.....+..++ ..+.|+|+||+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCH
Confidence 455679999999999999999999985211 111112223333333333333 46789999999
Q ss_pred chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHc
Q 026548 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQ 163 (237)
Q Consensus 88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~ 163 (237)
+.|.......+..+|++++|+|+.+...... ..++..+.. .++| ++|++||+|+....+. ..+++.++....
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY 230 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence 9998877777889999999999987533222 233333333 3677 7789999998653221 122444555543
Q ss_pred -----CCeEEEEcCCCCCC
Q 026548 164 -----GLFFSEASALNGDN 177 (237)
Q Consensus 164 -----~~~~~~~Sa~~~~g 177 (237)
.++++.+|+.++.+
T Consensus 231 g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 231 EFPGDDIPIISGSALLALE 249 (478)
T ss_pred CCCcCcceEEEEEcccccc
Confidence 46799999988754
No 236
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.65 E-value=2.5e-15 Score=118.85 Aligned_cols=113 Identities=16% Similarity=0.224 Sum_probs=78.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCC----------------CCCCcceeEEEEEEEEC--------CEEEEEEEEeCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFD----------------SKSTIGVEFQTRTVTIN--------GKIIKAQIWDTA 85 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~ 85 (237)
+|+++|+.++|||||+.+|+...-... .....+.......+.+. +..+.+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999975431100 00111111111122222 346789999999
Q ss_pred CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146 (237)
Q Consensus 86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 146 (237)
|++.|.......++.+|++++|||+.+....... ..+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcc
Confidence 9999999999999999999999999986554432 22222222 368999999999975
No 237
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.65 E-value=4.3e-15 Score=120.97 Aligned_cols=112 Identities=18% Similarity=0.138 Sum_probs=79.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCc------------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFF------------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 91 (237)
+|+++|++|+|||||+++|+...-. .......+.+.....+...+ .++.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 5899999999999999999642110 01112333333444444555 678899999999888
Q ss_pred hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
..+...++.+|++|+|+|+.+...... ...+..+.. .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888899999999999999987432222 233333333 4689999999999864
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.64 E-value=3.4e-15 Score=130.57 Aligned_cols=151 Identities=23% Similarity=0.220 Sum_probs=95.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC---------------------------------CCCCcceeEEEEEEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFD---------------------------------SKSTIGVEFQTRTVTI 72 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 72 (237)
...++|+++|++++|||||+.+|+...-... ....++.+.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4469999999999999999999975421110 0012233333333333
Q ss_pred CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC
Q 026548 73 NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS 152 (237)
Q Consensus 73 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 152 (237)
++ .++.|+||||++.|.......+..+|++++|+|+.....-.....+ ..+... ...|++|++||+|+....+..
T Consensus 105 ~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l--g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 105 EK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL--GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred CC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh--CCCceEEEEEeeccccchhHH
Confidence 33 5788999999998876555667999999999999864321111111 111111 124788999999986432211
Q ss_pred HHH----HHHHHHHc----CCeEEEEcCCCCCCHHHH
Q 026548 153 AED----AVEFAEDQ----GLFFSEASALNGDNVDTA 181 (237)
Q Consensus 153 ~~~----~~~~~~~~----~~~~~~~Sa~~~~gi~~~ 181 (237)
.+. ...+.... ..+++++||++|.|+++.
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 222 22333333 367999999999999864
No 239
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.63 E-value=5.7e-15 Score=119.96 Aligned_cols=164 Identities=18% Similarity=0.087 Sum_probs=113.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----hhHh---hhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA----VTSA---YYRGA 101 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~---~~~~~ 101 (237)
.-|.++|-||+|||||++++..-+......+.++....-..+.+.+. -.|.+-|.||.-+-.+ +-.. .+.++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-ESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-CcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 45789999999999999999988766655566666665555655332 3578999999443322 2223 35688
Q ss_pred cEEEEEEECCChh---hHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEE-EEcCCCC
Q 026548 102 LGAVVVYDITKRQ---SFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFS-EASALNG 175 (237)
Q Consensus 102 d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~ 175 (237)
.++++|+|++..+ ..++......++..+.. .+.|.+||+||+|+....+...+...++....+...+ .+|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 9999999998643 35555555666655543 6799999999999765444333344445555554322 2999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 026548 176 DNVDTAFFRLLQEIYGAV 193 (237)
Q Consensus 176 ~gi~~~~~~l~~~i~~~~ 193 (237)
.|++++...+.+.+.+..
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999888877776654
No 240
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.1e-14 Score=124.44 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=118.7
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
.++..=|.++|+..=|||||+.+|.+..+.......++....-..+.++.. -.+.|.||||+..|..|..+-....|++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEE
Confidence 345667999999999999999999999988777677766666666666532 4688999999999999999999999999
Q ss_pred EEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC---------CeEEEEcC
Q 026548 105 VVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG---------LFFSEASA 172 (237)
Q Consensus 105 ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa 172 (237)
++|+.++| +++.+.+. .....++|+||.+||+|.++ .+++.+.+-...+| +.++++||
T Consensus 229 VLVVAadDGVmpQT~EaIk-------hAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSA 298 (683)
T KOG1145|consen 229 VLVVAADDGVMPQTLEAIK-------HAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISA 298 (683)
T ss_pred EEEEEccCCccHhHHHHHH-------HHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeec
Confidence 99999998 55554442 22225899999999999764 44566555444433 46899999
Q ss_pred CCCCCHHHHHHHHHH
Q 026548 173 LNGDNVDTAFFRLLQ 187 (237)
Q Consensus 173 ~~~~gi~~~~~~l~~ 187 (237)
++|.|++.+-+++.-
T Consensus 299 l~g~nl~~L~eaill 313 (683)
T KOG1145|consen 299 LTGENLDLLEEAILL 313 (683)
T ss_pred ccCCChHHHHHHHHH
Confidence 999999987766543
No 241
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.63 E-value=4.7e-15 Score=127.66 Aligned_cols=147 Identities=26% Similarity=0.271 Sum_probs=94.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcC---------------------------------CCCCCcceeEEEEEEEECCE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFF---------------------------------DSKSTIGVEFQTRTVTINGK 75 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 75 (237)
++|+++|+.++|||||+.+|+...-.. ......+.+.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 589999999999999999986432110 0011223333333343344
Q ss_pred EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH--
Q 026548 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA-- 153 (237)
Q Consensus 76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~-- 153 (237)
.++.|+||||++.|.......+..+|++|+|+|+......+....| ..+... ...+++|++||+|+........
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~--~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL--GIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc--CCCcEEEEEEecccccchHHHHHH
Confidence 4788999999999977666778999999999999864322222222 122221 1235889999999864322111
Q ss_pred --HHHHHHHHHcC---CeEEEEcCCCCCCHHH
Q 026548 154 --EDAVEFAEDQG---LFFSEASALNGDNVDT 180 (237)
Q Consensus 154 --~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 180 (237)
++...+....+ ++++++||.+|.|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22333344444 4699999999999885
No 242
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=1.8e-14 Score=102.79 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=71.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh---------chhhHhhhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY---------RAVTSAYYR 99 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~~ 99 (237)
+|+|+|.+|+|||||+|+|++.... ....+..+.......+.+++.. +.|+||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6999999999999999999986442 2222444444444556677754 469999995321 112333448
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK 142 (237)
.+|++++|+|+.++.. +.....++.+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999877322 23333444442 47999999998
No 243
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.63 E-value=1.5e-14 Score=127.65 Aligned_cols=117 Identities=16% Similarity=0.136 Sum_probs=79.2
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC-------------C----C---CCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD-------------S----K---STIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-------------~----~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
...+|+|+|++++|||||+++|+...-... . . ...+..+......+....+.+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999963111000 0 0 0012222222233333346789999999
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
+..|.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 999988778889999999999999874322 23344443333 4799999999999753
No 244
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.62 E-value=1.2e-14 Score=126.20 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=99.5
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCC-------------------------------cCCCCCCcceeEEEEEEEECC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEF-------------------------------FFDSKSTIGVEFQTRTVTING 74 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 74 (237)
...++|+++|+.++|||||+.+|+...- ........+.+... ..+..
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~--~~~~~ 82 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIAL--WKFET 82 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEE--EEecC
Confidence 3468999999999999999998864211 00111222333332 33333
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhH-------HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF-------DHVARWVEELRAHADSSIR-IILIGNKSDLV 146 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~-------~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~ 146 (237)
....+.|+|+||+++|.......+..+|++|+|+|+++. .+ ......+..... .++| ++|++||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCC
Confidence 346788999999999999888889999999999999873 12 122222222222 3675 68899999975
Q ss_pred CC-c-----CCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548 147 DM-R-----AVSAEDAVEFAEDQG-----LFFSEASALNGDNVDT 180 (237)
Q Consensus 147 ~~-~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 180 (237)
.. + ....+++..++.+.+ ++++++||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 21 1 112445666666666 5699999999999864
No 245
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.62 E-value=2.7e-14 Score=118.51 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=56.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE---------------------CC-EEEEEEEEeCCCc-
Q 026548 31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI---------------------NG-KIIKAQIWDTAGQ- 87 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~l~Dt~G~- 87 (237)
|+++|.||+|||||+|+|++........+..+.+.......+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999998754333333333333222221 22 3367999999996
Q ss_pred ---chhchhhHh---hhcCCcEEEEEEECC
Q 026548 88 ---ERYRAVTSA---YYRGALGAVVVYDIT 111 (237)
Q Consensus 88 ---~~~~~~~~~---~~~~~d~~ilv~d~~ 111 (237)
+.+..+... .++.+|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444444444 489999999999997
No 246
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.62 E-value=1.1e-14 Score=118.85 Aligned_cols=141 Identities=20% Similarity=0.220 Sum_probs=89.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCC------------------CCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSK------------------STIGVEFQTRTVTINGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 91 (237)
+|+++|++|+|||||+++|+......... ...+.......+..++ +.+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 58999999999999999997533111100 0111222223344444 578899999999888
Q ss_pred hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEE--E
Q 026548 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFS--E 169 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~ 169 (237)
..+...++.+|++++|+|+++.........| ..+.. .++|+++++||+|+.... ..+...++....+.+++ .
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 8888899999999999999886544333222 22322 478999999999986531 12233334344454433 3
Q ss_pred EcCCCCCCH
Q 026548 170 ASALNGDNV 178 (237)
Q Consensus 170 ~Sa~~~~gi 178 (237)
+...++.++
T Consensus 153 ip~~~~~~~ 161 (268)
T cd04170 153 LPIGEGDDF 161 (268)
T ss_pred ecccCCCce
Confidence 334444444
No 247
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.9e-14 Score=116.13 Aligned_cols=157 Identities=22% Similarity=0.193 Sum_probs=111.0
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhHh
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTSA 96 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~ 96 (237)
.......++++|.|++|||||+++|++-+......+.++....+..+.++| .++++.|+||.-.-. ...-.
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeee
Confidence 344568899999999999999999999887776667777777778888887 678899999833221 22445
Q ss_pred hhcCCcEEEEEEECCChhh-HHHHHHHHHH--------------------------------------------HHHh--
Q 026548 97 YYRGALGAVVVYDITKRQS-FDHVARWVEE--------------------------------------------LRAH-- 129 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~--------------------------------------------~~~~-- 129 (237)
.+++||++++|+|+..... .+.+.+.+.. ..-+
T Consensus 137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA 216 (365)
T COG1163 137 VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA 216 (365)
T ss_pred eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc
Confidence 6799999999999986443 3333222111 1000
Q ss_pred -------------------cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 130 -------------------ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 130 -------------------~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
...-+|.++|.||.|+.+ .++...+.+.. .++.+||+.+.|++++.+.|.+.+
T Consensus 217 ~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 217 DVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred eEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 001478999999999865 33444444444 689999999999997776665543
No 248
>PRK13351 elongation factor G; Reviewed
Probab=99.62 E-value=2.8e-14 Score=130.66 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=83.6
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCc--------CCC----------CCCcceeEEEEEEEECCEEEEEEEEeCC
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFF--------FDS----------KSTIGVEFQTRTVTINGKIIKAQIWDTA 85 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 85 (237)
+.+...+|+|+|+.++|||||+++|+...-. ... ....+.......+...+ +.+.+||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtP 81 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTP 81 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECC
Confidence 3445789999999999999999999753210 000 01112222223333444 678999999
Q ss_pred CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
|+..+...+..+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 9999998899999999999999999986655544333 33333 4789999999999864
No 249
>PRK00049 elongation factor Tu; Reviewed
Probab=99.61 E-value=2.8e-14 Score=122.52 Aligned_cols=145 Identities=18% Similarity=0.109 Sum_probs=94.0
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCc----------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFF----------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 89 (237)
...++|+++|+.++|||||+++|++.... .......+.+. ....+.....++.|+||||+..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHHH
Confidence 34689999999999999999999863110 01122333333 3333433335678999999988
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcCC---CHHHHHHHHHHc--
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRII-LIGNKSDLVDMRAV---SAEDAVEFAEDQ-- 163 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~---~~~~~~~~~~~~-- 163 (237)
|.......+..+|++++|+|+....... ...++..+.. .++|.+ |++||+|+....+. ..+++.++....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 8777777789999999999998743222 2233333333 368876 68999998642221 112333444443
Q ss_pred ---CCeEEEEcCCCCC
Q 026548 164 ---GLFFSEASALNGD 176 (237)
Q Consensus 164 ---~~~~~~~Sa~~~~ 176 (237)
+++++.+||.++.
T Consensus 164 ~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 164 PGDDTPIIRGSALKAL 179 (396)
T ss_pred CccCCcEEEeeccccc
Confidence 3679999999875
No 250
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3.6e-15 Score=108.82 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=115.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.-|++++|-.|+|||||++.|.++...... || ...+.....+.+ .+++.+|.+|+...+..|..++..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PT--lHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PT--LHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccC-CC--cCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 348999999999999999999888754332 43 334445566677 5678999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH------HHc--------C---CeEEE
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA------EDQ--------G---LFFSE 169 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~------~~~--------~---~~~~~ 169 (237)
+|+-+.+-+.+.+..++.+..... ..+|++|.+||+|.+... +.++.+... -.. + +.++.
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 999999888888777777655443 689999999999987632 333322211 111 1 23778
Q ss_pred EcCCCCCCHHHHHHHHHH
Q 026548 170 ASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 170 ~Sa~~~~gi~~~~~~l~~ 187 (237)
||...+.+-.+.|.|+..
T Consensus 173 csi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEccCccceeeeehhh
Confidence 888888887777776654
No 251
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.61 E-value=5.8e-14 Score=109.45 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=96.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC--CCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hh---H
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK--STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VT---S 95 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~---~ 95 (237)
++|+++|.+|+|||||+|+|++........ +..+.........+++ ..+.++||||...... +. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999987544332 2333444444445566 3678999999543311 11 1
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCC------CHHHHHHHHHHcCCeE
Q 026548 96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAV------SAEDAVEFAEDQGLFF 167 (237)
Q Consensus 96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 167 (237)
....+.|++|+|+++.+ .+. .....++.+....+ .-.+++|++|+.|....... .....+.+....+-.|
T Consensus 79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 12367899999999987 222 22233444444332 12578899999996543211 1234555566666666
Q ss_pred EEEcC-----CCCCCHHHHHHHHHHHHHH
Q 026548 168 SEASA-----LNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 168 ~~~Sa-----~~~~gi~~~~~~l~~~i~~ 191 (237)
+..+. ..+.+++++++.+.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 56554 3456667666655555544
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.60 E-value=1.4e-14 Score=131.41 Aligned_cols=152 Identities=24% Similarity=0.230 Sum_probs=95.6
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC---------------C------------------CCCcceeEEEEEE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD---------------S------------------KSTIGVEFQTRTV 70 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---------------~------------------~~~~~~~~~~~~~ 70 (237)
.....++|+++|++++|||||+++|+...-... . ....+.+.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 344468999999999999999999986432111 0 0112222333333
Q ss_pred EECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 71 TINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 71 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
..++ .++.|+||||++.|.......+..+|++++|+|+.....-+... .+..+... ...+++|++||+|+.....
T Consensus 100 ~~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~--~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 100 ATPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLL--GIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred ccCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHh--CCCeEEEEEEecccccchh
Confidence 3333 46789999999988766666788999999999997643221111 11222222 1257889999999864221
Q ss_pred CCH----HHHHHHHHHcC---CeEEEEcCCCCCCHHH
Q 026548 151 VSA----EDAVEFAEDQG---LFFSEASALNGDNVDT 180 (237)
Q Consensus 151 ~~~----~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 180 (237)
... .++.++....+ ++++++||++|.|+.+
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 22333444555 4589999999999874
No 253
>PLN03127 Elongation factor Tu; Provisional
Probab=99.60 E-value=3.7e-14 Score=123.03 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=96.9
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcC------CC----------cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKN------EF----------FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
......++|+++|+.++|||||+++|.+. .. ........+.+..... +.....++.|+||||
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtPG 133 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCPG 133 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECCC
Confidence 34456799999999999999999999622 10 0111233344443333 333335788999999
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCCC---HHHHHHHHHH
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAVS---AEDAVEFAED 162 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~---~~~~~~~~~~ 162 (237)
+..|.......+..+|++++|+|+++...-+. ...+..+.. .++| +++++||+|+.++.+.. .++..++...
T Consensus 134 h~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~ 209 (447)
T PLN03127 134 HADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSF 209 (447)
T ss_pred ccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 99887766666778999999999986432221 222233332 4688 57889999986532211 1122233332
Q ss_pred c-----CCeEEEEcCC---CCCC-------HHHHHHHHHH
Q 026548 163 Q-----GLFFSEASAL---NGDN-------VDTAFFRLLQ 187 (237)
Q Consensus 163 ~-----~~~~~~~Sa~---~~~g-------i~~~~~~l~~ 187 (237)
. .++++.+|+. ++.+ +.+++++|..
T Consensus 210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~ 249 (447)
T PLN03127 210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE 249 (447)
T ss_pred hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence 2 3578888875 4444 4555544444
No 254
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.5e-14 Score=123.56 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=115.5
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCc---------------CCCCCCcceeEEEEE-EEECCEEEEEEEEeCCCc
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFF---------------FDSKSTIGVEFQTRT-VTINGKIIKAQIWDTAGQ 87 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~ 87 (237)
+.++..++.|+.+..=|||||..+|+...-. ......+++.-.... +..+|..+.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 4567889999999999999999998753221 111122333222222 222467788999999999
Q ss_pred chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH----Hc
Q 026548 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAE----DQ 163 (237)
Q Consensus 88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~----~~ 163 (237)
..|.....+.+..+|++|+|+|+...---+.+..++..+. .+.-+|.|+||+|++..+ .+.+..... ..
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~ad---pe~V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSAD---PERVENQLFELFDIP 208 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCC---HHHHHHHHHHHhcCC
Confidence 9999999999999999999999998554455555455444 367899999999997643 333333322 23
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 164 GLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 164 ~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
..+++.+||++|.|+.++|+++++.+.
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCC
Confidence 346999999999999999988887763
No 255
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=8.6e-15 Score=123.75 Aligned_cols=167 Identities=23% Similarity=0.257 Sum_probs=109.4
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchh-ch--------hh
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERY-RA--------VT 94 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~--------~~ 94 (237)
.+..++|+++|+||+|||||+|+|........+. +.++.+.....++++| +.+.|.||+|..+. .. ..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence 3445899999999999999999999998776543 6666777777788888 56779999995551 11 12
Q ss_pred HhhhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHHhcC------CCCcEEEEEeCCCCCCC-cCCCHHHHHHHHH--Hc
Q 026548 95 SAYYRGALGAVVVYDITKR--QSFDHVARWVEELRAHAD------SSIRIILIGNKSDLVDM-RAVSAEDAVEFAE--DQ 163 (237)
Q Consensus 95 ~~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~------~~~p~vvv~nK~D~~~~-~~~~~~~~~~~~~--~~ 163 (237)
...+..+|++++|+|+... ++...+...+........ ...|++++.||.|+..+ .+.... ...+.. ..
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~ 421 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGR 421 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccC
Confidence 3356899999999999442 222222222222221111 23788999999998764 122111 111111 11
Q ss_pred C-Ce-EEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548 164 G-LF-FSEASALNGDNVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 164 ~-~~-~~~~Sa~~~~gi~~~~~~l~~~i~~~~~ 194 (237)
+ .+ +.++|+++++|++++.+.+...+.....
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 1 22 6669999999999988877776554433
No 256
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.59 E-value=2.8e-14 Score=123.95 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=96.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCC--Cc-----------------------------CCCCCCcceeEEEEEEEECC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNE--FF-----------------------------FDSKSTIGVEFQTRTVTING 74 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 74 (237)
...++|+++|+.++|||||+.+|+... .. .......+.+... ..+..
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~--~~~~~ 82 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIAL--WKFET 82 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeee--EEEcc
Confidence 346899999999999999999987521 00 0011222333333 33333
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---F---DHVARWVEELRAHADSSIR-IILIGNKSDLVD 147 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 147 (237)
....+.|+||||+.+|.......+..+|++++|+|+..... + ......+..+.. .++| ++|++||+|...
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 44678899999999998888888899999999999986421 0 122222222222 3666 678999999532
Q ss_pred --CcCCC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548 148 --MRAVS----AEDAVEFAEDQG-----LFFSEASALNGDNVDT 180 (237)
Q Consensus 148 --~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 180 (237)
..+.. .+++.++....+ ++++.+|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 233344444333 5699999999999864
No 257
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1.5e-14 Score=114.49 Aligned_cols=169 Identities=15% Similarity=0.152 Sum_probs=111.8
Q ss_pred cccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEE-EEECCEEEEEEEEeCCCcch-------
Q 026548 18 ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRT-VTINGKIIKAQIWDTAGQER------- 89 (237)
Q Consensus 18 ~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~------- 89 (237)
.++.+......++|+++|..|+|||||||+|+.+...+...-..+.+..... ..+++ -.+.|||+||.++
T Consensus 29 ~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~ 106 (296)
T COG3596 29 LRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAE 106 (296)
T ss_pred hhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHH
Confidence 3344444556789999999999999999999987766555433333332222 22344 3578999999544
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---c----CCCHHHHHHHHHH
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM---R----AVSAEDAVEFAED 162 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~---~----~~~~~~~~~~~~~ 162 (237)
++.....++...|.+++++++.++.---+...|.+.+... .+.++++++|.+|.... | ......++++...
T Consensus 107 ~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 107 HRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred HHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence 7777888999999999999999865333333444444333 34899999999997542 1 1111122222221
Q ss_pred --------c--CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 163 --------Q--GLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 163 --------~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
. =-|++.++...+.|++.+..+++..+.
T Consensus 185 k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 185 KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1 136888888999999988888777654
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=1.4e-13 Score=125.79 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=84.4
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCc------------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCC
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFF------------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 85 (237)
..++..+|+|+|++++|||||+++|+...-. ......++.+.....+..++ .++.|+|||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTP 81 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTP 81 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCC
Confidence 3456789999999999999999999742110 00123344444455555555 578899999
Q ss_pred CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
|+..+...+...++.+|++|+|+|+.+....... ..+..+.. .++|+++++||+|+..
T Consensus 82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 9998888888899999999999999875433222 23333333 4689999999999864
No 259
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.57 E-value=9.6e-14 Score=126.97 Aligned_cols=119 Identities=18% Similarity=0.112 Sum_probs=85.4
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-----C-------------CCCCcceeEEEEEEEECCEEEEEEEEeC
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-----D-------------SKSTIGVEFQTRTVTINGKIIKAQIWDT 84 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 84 (237)
...++..+|+|+|++++|||||+++|+...-.. . ....++.+.....+.+++ .++.||||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDT 82 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDT 82 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEEC
Confidence 445567899999999999999999997422110 0 012334444445555555 67889999
Q ss_pred CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 85 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
||+..+...+...++.+|++|+|+|+.+....... .++..+.. .++|+++++||+|+..
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 99998888888899999999999999875444333 23333333 4689999999999875
No 260
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.56 E-value=4.5e-14 Score=122.46 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=102.4
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCc---CCCCCCcceeEEEEEE---------------EECC-----------
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFF---FDSKSTIGVEFQTRTV---------------TING----------- 74 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~~----------- 74 (237)
.....++|+++|+...|||||+.+|.+...+ .......+.+...... ..+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 4466799999999999999999999974321 1111111111111100 0000
Q ss_pred -E----EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548 75 -K----IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149 (237)
Q Consensus 75 -~----~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 149 (237)
. ...+.|+|+||++.|.......+..+|++++|+|+.+..........+..+. .. .-.+++|++||+|+....
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~l-gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IM-KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-Hc-CCCcEEEEEecccccCHH
Confidence 0 1257899999999998777777889999999999986311111122222222 21 124688999999986422
Q ss_pred C--CCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 150 A--VSAEDAVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 150 ~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
. ...+++.++... .+.+++.+||++|.|++.+++.|.+.+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 1 112233333332 357899999999999998888777644
No 261
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=1.2e-13 Score=116.47 Aligned_cols=158 Identities=20% Similarity=0.215 Sum_probs=116.5
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCC---------------cCCCCCCcceeEEEEEEEE---CCEEEEEEEEeCCC
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEF---------------FFDSKSTIGVEFQTRTVTI---NGKIIKAQIWDTAG 86 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G 86 (237)
..+..+..++.+-.=|||||..+|+...- +......+++......+.+ +|..+.++|+||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 34556788899999999999999865321 1122233343333333333 56779999999999
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHH-HHHHHHHcCC
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAED-AVEFAEDQGL 165 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~-~~~~~~~~~~ 165 (237)
|-.|.-...+.+..|.+.++|+|++..-..+.+...|..+.. +.-++-|+||+|++... ++. .+++..-.|+
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad---pervk~eIe~~iGi 158 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD---PERVKQEIEDIIGI 158 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC---HHHHHHHHHHHhCC
Confidence 999998888889999999999999987666666666666654 67899999999997632 333 3344445665
Q ss_pred e---EEEEcCCCCCCHHHHHHHHHHHH
Q 026548 166 F---FSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 166 ~---~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
+ .+.+||++|.||+++++.|++.+
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhC
Confidence 4 88999999999999988888765
No 262
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=5.7e-14 Score=118.93 Aligned_cols=173 Identities=15% Similarity=0.138 Sum_probs=124.1
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh----ch---
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY----RA--- 92 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~--- 92 (237)
..+...+....++|+|.|++|||||+|.+..........+.++.......+ +.....++++||||.-.. +.
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHH
Confidence 345567778899999999999999999998887766655554444443333 344467899999992211 11
Q ss_pred --hhHhhhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHH---HHHHHHHcCC
Q 026548 93 --VTSAYYRGALGAVVVYDITK--RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAED---AVEFAEDQGL 165 (237)
Q Consensus 93 --~~~~~~~~~d~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~---~~~~~~~~~~ 165 (237)
.+..+.+---+|+|++|++. ..|.......++.+.... .+.|+|+|+||+|......+..+. ...+...-++
T Consensus 238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v 316 (620)
T KOG1490|consen 238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316 (620)
T ss_pred HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCc
Confidence 12233344456899999987 567777778888888877 589999999999986655544332 3333334458
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548 166 FFSEASALNGDNVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 166 ~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~ 195 (237)
+++++|..+.+|+-++-...++.++..+-+
T Consensus 317 ~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE 346 (620)
T KOG1490|consen 317 KVVQTSCVQEEGVMDVRTTACEALLAARVE 346 (620)
T ss_pred eEEEecccchhceeeHHHHHHHHHHHHHHH
Confidence 999999999999999999988887776653
No 263
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.53 E-value=5.4e-13 Score=113.94 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=58.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE---------------------C-CEEEEEEEEeCCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI---------------------N-GKIIKAQIWDTAG 86 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~Dt~G 86 (237)
++|+++|.||+|||||+|+|++........+..+.+.....+.+ + ...+.+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999988765433344444443333221 1 1236789999999
Q ss_pred cc----hhchhhHhh---hcCCcEEEEEEECC
Q 026548 87 QE----RYRAVTSAY---YRGALGAVVVYDIT 111 (237)
Q Consensus 87 ~~----~~~~~~~~~---~~~~d~~ilv~d~~ 111 (237)
.. ....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 333444455 78999999999996
No 264
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.52 E-value=2e-13 Score=120.61 Aligned_cols=118 Identities=18% Similarity=0.164 Sum_probs=80.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC--------------------CCCcceeEEEEEEEECCEEEEEEEEeCC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS--------------------KSTIGVEFQTRTVTINGKIIKAQIWDTA 85 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 85 (237)
.+..+|+|+|++++|||||+++|+...-.... ....+..+......++...+++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 34669999999999999999998632110000 0111233333333444444788999999
Q ss_pred CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
|+..|.......++.+|++|+|+|+.+... .....++..... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 999888777778899999999999987421 123344443332 4789999999999864
No 265
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.52 E-value=3.4e-14 Score=107.87 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=70.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE-CCEEEEEEEEeCCCcchhchhhHh---hhcCCcEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQERYRAVTSA---YYRGALGA 104 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~~ 104 (237)
-.|+++|+.|||||+|+..|..+.......+. .... .+.+ ......+.++|+||+.+.+..... ++..+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 36999999999999999999998654443322 1111 1111 112235779999999998875544 47899999
Q ss_pred EEEEECCC-hhhHHHHHH-HHHHHHHhc--CCCCcEEEEEeCCCCCC
Q 026548 105 VVVYDITK-RQSFDHVAR-WVEELRAHA--DSSIRIILIGNKSDLVD 147 (237)
Q Consensus 105 ilv~d~~~-~~s~~~~~~-~~~~~~~~~--~~~~p~vvv~nK~D~~~ 147 (237)
|||+|++. ......... ++..+.... ...+|++|+.||.|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 99999974 334444433 333332222 36799999999999864
No 266
>PRK09866 hypothetical protein; Provisional
Probab=99.52 E-value=8.6e-13 Score=116.08 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=72.8
Q ss_pred EEEEEeCCCcchh-----chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC
Q 026548 78 KAQIWDTAGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS 152 (237)
Q Consensus 78 ~~~l~Dt~G~~~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 152 (237)
++.|+||||.... .......+..+|+++||+|++...+..+ ....+.+.... ...|+++|+||+|+.......
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence 5779999996442 2234457899999999999987443333 12233343322 236999999999986433333
Q ss_pred HHHHHHHHH----HcC---CeEEEEcCCCCCCHHHHHHHHHH
Q 026548 153 AEDAVEFAE----DQG---LFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 153 ~~~~~~~~~----~~~---~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
.+...++.. ..+ ..+|++||+.|.|++.+++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 455555533 222 24999999999999999988877
No 267
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.52 E-value=1.1e-13 Score=96.44 Aligned_cols=136 Identities=19% Similarity=0.213 Sum_probs=98.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----cchhchhhHhhhcCCcEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----QERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~~i 105 (237)
||+++|..|+|||||.++|.+..... ..|. -+.++... .+|||| +..+..........+|.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQ-------Ave~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQ-------AVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--cccc-------eeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 79999999999999999998876422 1221 12232221 679999 5555565666778999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAFFR 184 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~ 184 (237)
+|-+++++.+.-. ..+... ...|+|-|++|+|+.++ ...+..+++..+-|.. +|++|+.++.|+++++..
T Consensus 70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCC-----cccccc--cccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 9999998754211 112222 24568999999999863 3456778888888864 999999999999999987
Q ss_pred HHH
Q 026548 185 LLQ 187 (237)
Q Consensus 185 l~~ 187 (237)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 754
No 268
>PRK12740 elongation factor G; Reviewed
Probab=99.48 E-value=8.5e-13 Score=120.69 Aligned_cols=108 Identities=20% Similarity=0.197 Sum_probs=76.2
Q ss_pred EcCCCCcHHHHHHHHhcCCCc--------CC----------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhH
Q 026548 34 IGDSAVGKSQILSRFTKNEFF--------FD----------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTS 95 (237)
Q Consensus 34 ~G~~~sGKSsli~~l~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 95 (237)
+|++++|||||+++|+...-. .. .....+.......+...+ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 599999999999999543211 00 012333444444455555 6788999999998888888
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
..+..+|++++|+|++..........| ..+.. .++|+++++||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 889999999999999886554443323 33332 4789999999999753
No 269
>PRK00007 elongation factor G; Reviewed
Probab=99.48 E-value=1.7e-12 Score=118.85 Aligned_cols=119 Identities=16% Similarity=0.106 Sum_probs=83.7
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCC--CcC---C-------------CCCCcceeEEEEEEEECCEEEEEEEEeC
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNE--FFF---D-------------SKSTIGVEFQTRTVTINGKIIKAQIWDT 84 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 84 (237)
...++..+|+|+|++++|||||+++|+... ... . .....+.+.....+.+.+ .++.|+||
T Consensus 5 ~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDT 82 (693)
T PRK00007 5 TPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDT 82 (693)
T ss_pred CcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeC
Confidence 345667899999999999999999997311 100 0 123334444444555555 57889999
Q ss_pred CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 85 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
||+..+.......++.+|++|+|+|+...-..+... .+..+.. .++|+++++||+|+..
T Consensus 83 PG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 83 PGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred CCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence 999888777777889999999999988754333322 2233333 4689999999999875
No 270
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.45 E-value=2.6e-12 Score=120.14 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=99.0
Q ss_pred cHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEE----------------EEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 40 GKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI----------------IKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 40 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
+||||+.+|.+......-...++.+.....+..+... -.+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999999877666666666655555543210 127899999999998888888889999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH------------HHH-HHH--------
Q 026548 104 AVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA------------EDA-VEF-------- 159 (237)
Q Consensus 104 ~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~------------~~~-~~~-------- 159 (237)
+++|+|+++ +++++.+. .+.. .++|+++++||+|+...+.... +.. .++
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999987 44444332 2222 3689999999999864332110 111 111
Q ss_pred --HHH-------------c--CCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 160 --AED-------------Q--GLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 160 --~~~-------------~--~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
... + .++++++||++|+|+++++.+|...
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 011 1 3579999999999999999877643
No 271
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=6.5e-13 Score=110.65 Aligned_cols=151 Identities=20% Similarity=0.175 Sum_probs=97.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCC-------------------------------cCCCCCCcceeEEEEEEEECCE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEF-------------------------------FFDSKSTIGVEFQTRTVTINGK 75 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 75 (237)
..++++++|+..+|||||+-+|+...- ........+.+. ....+.-.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~--~~~~fet~ 83 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDV--AHSKFETD 83 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEE--EEEEeecC
Confidence 468999999999999999988864310 011112223333 33333333
Q ss_pred EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHH-----HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFD-----HVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-----~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
.+.+.|+|+||+..|-......+.+||+.|+|+|+++.+.-. ...+..-.+.+.. .--.+||++||+|..++.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccCH
Confidence 357889999999999888888899999999999998853111 1111111222222 2345789999999987544
Q ss_pred CCHHHH----HHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548 151 VSAEDA----VEFAEDQG-----LFFSEASALNGDNVDT 180 (237)
Q Consensus 151 ~~~~~~----~~~~~~~~-----~~~~~~Sa~~~~gi~~ 180 (237)
...+++ ..+.+..| ++|+++|+..|+|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 333333 23333433 5699999999999875
No 272
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.43 E-value=3.3e-12 Score=102.71 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=76.4
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhc--h----
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYR--A---- 92 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~---- 92 (237)
.........++|+|+|.+|+|||||+|+|++........ ...+..........++ ..+.+|||||..... .
T Consensus 23 ~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~ 100 (249)
T cd01853 23 KGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNR 100 (249)
T ss_pred HhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHH
Confidence 333566678999999999999999999999987544322 2233333333444455 567899999955431 1
Q ss_pred ----hhHhhhc--CCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 026548 93 ----VTSAYYR--GALGAVVVYDITKRQ-SFDHVARWVEELRAHADS--SIRIILIGNKSDLV 146 (237)
Q Consensus 93 ----~~~~~~~--~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~vvv~nK~D~~ 146 (237)
....++. ..|++++|..++... ... -...+..+....+. -.+++||.||+|..
T Consensus 101 ~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 101 KILSSIKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 1122332 678888887665422 222 12333333333221 25699999999974
No 273
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.42 E-value=1.1e-11 Score=101.44 Aligned_cols=123 Identities=12% Similarity=0.099 Sum_probs=73.4
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh-------h
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV-------T 94 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~ 94 (237)
......++|+|+|.+|+||||++|+|++........ .+.+..........++ ..+.++||||....... .
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHH
Confidence 334568999999999999999999999887543221 2222222222233455 57889999996543221 1
Q ss_pred Hhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCC
Q 026548 95 SAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVD 147 (237)
Q Consensus 95 ~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~ 147 (237)
..++ ...|++|||..++.......-...+..+....+ --.+++|++|+.|...
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 2222 268999999665432111111223333333322 1256899999999653
No 274
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.42 E-value=5.5e-12 Score=108.80 Aligned_cols=172 Identities=19% Similarity=0.235 Sum_probs=126.6
Q ss_pred hhhhhcccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch
Q 026548 13 RHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA 92 (237)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 92 (237)
|.+...+.........+.+.|+|+.++|||.|++.+.++.+...+..+....+....+.+.|....+.|.|.+-. ....
T Consensus 410 Rkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~ 488 (625)
T KOG1707|consen 410 RKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDF 488 (625)
T ss_pred hhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-cccc
Confidence 333344555567778999999999999999999999999988866677767777777777777777888888754 2222
Q ss_pred hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEc
Q 026548 93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEAS 171 (237)
Q Consensus 93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S 171 (237)
+...- ..+|+++++||++++.++..+...++..... ...|+++|++|+|+.+..+...-...+++++++++ .+.+|
T Consensus 489 l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S 565 (625)
T KOG1707|consen 489 LTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHIS 565 (625)
T ss_pred ccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeec
Confidence 22222 7799999999999999999887776664443 58999999999999764433222337889999986 55666
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 026548 172 ALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 172 a~~~~gi~~~~~~l~~~i 189 (237)
.++.-. .++|..|+...
T Consensus 566 ~~~~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 566 SKTLSS-NELFIKLATMA 582 (625)
T ss_pred cCCCCC-chHHHHHHHhh
Confidence 664323 77887776643
No 275
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.42 E-value=6.1e-12 Score=99.20 Aligned_cols=160 Identities=15% Similarity=0.197 Sum_probs=91.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC--CCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhH----
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK--STIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTS---- 95 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~---- 95 (237)
++|+|+|..|+||||++|.+++........ ...+.........+++. .+.++||||..... ..+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 689999999999999999999988765432 33344555555677884 56799999933211 1111
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCcCC-------CHHHHHHHHHHcCCe
Q 026548 96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS--SIRIILIGNKSDLVDMRAV-------SAEDAVEFAEDQGLF 166 (237)
Q Consensus 96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~vvv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~ 166 (237)
....+.|++|||+.+.. -+..+ ...+..+....+. -..++||.|..|......+ ..+..+++.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 12357899999999983 22222 2222333333321 2458888998886543321 012345566677777
Q ss_pred EEEEcCC------CCCCHHHHHHHHHHHHHHh
Q 026548 167 FSEASAL------NGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 167 ~~~~Sa~------~~~gi~~~~~~l~~~i~~~ 192 (237)
|...+.+ ....+.++|..+-+.+.+.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 8877765 2244566665554444443
No 276
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.42 E-value=1.1e-12 Score=120.45 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=81.2
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCC---------------CcCC---CCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNE---------------FFFD---SKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
..+..+|+++|+.++|||||+++|+... +... ...++........+.+++..+++.||||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 3457899999999999999999997521 1110 111222222222333556668899999999
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
+..|.......++.+|++|+|+|+.+....+....| ..... .+.|+++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhccc
Confidence 999888888899999999999999874322222222 22222 3678899999999753
No 277
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.41 E-value=1.3e-11 Score=99.71 Aligned_cols=162 Identities=19% Similarity=0.335 Sum_probs=117.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC--CEEEEEEEEeCCCcchhchhhHhhhcCC---
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--GKIIKAQIWDTAGQERYRAVTSAYYRGA--- 101 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~--- 101 (237)
..-+|+|+|+.++||||||.+|-+.. ......+..+....+.-+ +...++.+|-.-|.--+..+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34589999999999999999998776 333444455544433322 2235678899888877777776665433
Q ss_pred -cEEEEEEECCChhhH-HHHHHHHHHHHHhcC------------------------------------------------
Q 026548 102 -LGAVVVYDITKRQSF-DHVARWVEELRAHAD------------------------------------------------ 131 (237)
Q Consensus 102 -d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------------------------ 131 (237)
-++|++.|++++.++ +.+.+|...+.++.+
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 357899999998544 567888776655411
Q ss_pred -------------CCCcEEEEEeCCCCCC----CcCCC-------HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 132 -------------SSIRIILIGNKSDLVD----MRAVS-------AEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 132 -------------~~~p~vvv~nK~D~~~----~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
.++|++||.+|+|... ..+.. ...+++||.++|..++.+|++...+++-++.+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 1689999999999732 22222 23467788899999999999999999999999998
Q ss_pred HHHH
Q 026548 188 EIYG 191 (237)
Q Consensus 188 ~i~~ 191 (237)
.+|.
T Consensus 288 r~yG 291 (473)
T KOG3905|consen 288 RSYG 291 (473)
T ss_pred HhcC
Confidence 8764
No 278
>PTZ00258 GTP-binding protein; Provisional
Probab=99.40 E-value=7e-12 Score=106.24 Aligned_cols=86 Identities=19% Similarity=0.153 Sum_probs=62.5
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEE---------------EEEEEEeCCCcchh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI---------------IKAQIWDTAGQERY 90 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 90 (237)
...++|+++|.||+|||||+|+|.+........|.++.+.....+.+++.. .++.++|+||....
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 446799999999999999999998887655555666666666666655332 35889999994422
Q ss_pred c----h---hhHhhhcCCcEEEEEEECC
Q 026548 91 R----A---VTSAYYRGALGAVVVYDIT 111 (237)
Q Consensus 91 ~----~---~~~~~~~~~d~~ilv~d~~ 111 (237)
. . .....++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 1 2223467899999999973
No 279
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3e-12 Score=112.85 Aligned_cols=164 Identities=20% Similarity=0.217 Sum_probs=113.8
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC------------CE----EEEEEEEeCCCcch
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN------------GK----IIKAQIWDTAGQER 89 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~l~Dt~G~~~ 89 (237)
-+..=++|+|+..+|||-|+..+.+.++......+++.......+... +. ---+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 334568999999999999999999888766655554433332222221 00 01367999999999
Q ss_pred hchhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH-------------
Q 026548 90 YRAVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA------------- 153 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~------------- 153 (237)
|..+..+....||.+|+|+|+.. +++.+.+ +.++. .+.|+||.+||+|....|....
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 99999999999999999999987 3444333 33333 5899999999999765432210
Q ss_pred -----------HHHHHHHHH-cC-------------CeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 026548 154 -----------EDAVEFAED-QG-------------LFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196 (237)
Q Consensus 154 -----------~~~~~~~~~-~~-------------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~ 196 (237)
..+.+|+.+ ++ +.++++||.+|+||.+++.+|++.....+..+
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 011222221 11 24678999999999999999998776666543
No 280
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.39 E-value=2.9e-11 Score=100.91 Aligned_cols=118 Identities=17% Similarity=0.221 Sum_probs=84.6
Q ss_pred EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 026548 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----------QSFDHVARWVEELRAHAD-SSIRIILIGNKSD 144 (237)
Q Consensus 76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D 144 (237)
.+.+.+||++|+...+..|..++.+++++|+|+|+++. ..+......+..+..... .+.|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 36788999999999999999999999999999999873 223333333333333222 5799999999999
Q ss_pred CCCC---------------c-CCCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548 145 LVDM---------------R-AVSAEDAVEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEIYGAV 193 (237)
Q Consensus 145 ~~~~---------------~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~ 193 (237)
+..+ . ....+.+.++... ..+.++.++|.+..++..+|+.+.+.|....
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 6321 0 2244555555442 2345677899999999999999988887654
No 281
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.35 E-value=5.9e-11 Score=99.88 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=83.3
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCC
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----------QSFDHVARWVEELRAHAD-SSIRIILIGNKSDL 145 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~ 145 (237)
+.+.+||.+|+...+..|..++.+++++|+|+|+++. ..+......++.+..... .+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5678999999999999999999999999999999873 123333334444333222 67999999999997
Q ss_pred CCC---------------cCCCHHHHHHHHHH-----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548 146 VDM---------------RAVSAEDAVEFAED-----------QGLFFSEASALNGDNVDTAFFRLLQEIYGAV 193 (237)
Q Consensus 146 ~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~ 193 (237)
... .....+.+.++... ..+.++.++|.+..++..+|+.+.+.|..+.
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 431 01234445544432 1244677889999999999999888877654
No 282
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.34 E-value=4.8e-12 Score=101.80 Aligned_cols=96 Identities=22% Similarity=0.234 Sum_probs=78.1
Q ss_pred chhchhhHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe
Q 026548 88 ERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF 166 (237)
Q Consensus 88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 166 (237)
+++..+.+.+++++|.+++|||++++. ++..+.+|+..+.. .++|++||+||+|+........+....+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 667777888999999999999999877 89999999986654 5799999999999975444333334444 457889
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q 026548 167 FSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 167 ~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999987764
No 283
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.34 E-value=2.5e-11 Score=94.67 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=64.0
Q ss_pred EEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH
Q 026548 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV 157 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~ 157 (237)
...++++.|..-...... ..+|.+|.|+|+.+.+.... .+..++. .--++++||+|+........+...
T Consensus 93 D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 93 EMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHHH
Confidence 455777777322222111 12678999999987655321 1112221 112899999999753233344555
Q ss_pred HHHHH--cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 158 EFAED--QGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 158 ~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
+.++. .+.++++||+++|.|++++|+++.+.+
T Consensus 162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 55554 347899999999999999999998764
No 284
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.6e-11 Score=92.54 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=77.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc---CCcEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR---GALGAVV 106 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~~il 106 (237)
.|+++|+.+||||+|+-.|..+.......+. ......+.++.. .+.|+|.||+.+.+.-...++. .+-+++|
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 6999999999999999999888554333211 112222223332 3679999999999887777776 7899999
Q ss_pred EEECCC-hhhHHHH-HHHHHHHHHh--cCCCCcEEEEEeCCCCCC
Q 026548 107 VYDITK-RQSFDHV-ARWVEELRAH--ADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 107 v~d~~~-~~s~~~~-~~~~~~~~~~--~~~~~p~vvv~nK~D~~~ 147 (237)
|+|... .....++ ...|..+... ....+|++|+.||.|+.-
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 999764 2233333 3334444333 246799999999999843
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.32 E-value=2.1e-11 Score=112.31 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=79.0
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC----------------CCCcceeEEEE--EEEECCEEEEEEEEeCCC
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS----------------KSTIGVEFQTR--TVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~--~~~~~~~~~~~~l~Dt~G 86 (237)
.++..+|+++|+.++|||||+.+|+...-.... ....+...... .+..++..+.+.|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 456779999999999999999999753211100 00111111111 122344457889999999
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 146 (237)
+..|.......++.+|++|+|+|+...-.......|. .... .+.|.++++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH---cCCCeEEEEECchhh
Confidence 9999888888899999999999988753332222232 2222 256889999999975
No 286
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.32 E-value=1.1e-10 Score=98.00 Aligned_cols=83 Identities=20% Similarity=0.137 Sum_probs=59.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEE---------------EEEEEEeCCCcchhc--
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI---------------IKAQIWDTAGQERYR-- 91 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~-- 91 (237)
++|+++|.||+|||||+|+|++........|.++.+.....+.+.+.. .++.+.|+||.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999988544444666666665565555421 258899999944321
Q ss_pred --hh---hHhhhcCCcEEEEEEECC
Q 026548 92 --AV---TSAYYRGALGAVVVYDIT 111 (237)
Q Consensus 92 --~~---~~~~~~~~d~~ilv~d~~ 111 (237)
.+ ....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12 222457999999999973
No 287
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.31 E-value=7e-11 Score=102.55 Aligned_cols=161 Identities=22% Similarity=0.378 Sum_probs=112.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC--CEEEEEEEEeCCCcchhchhhHhhhcCC----
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--GKIIKAQIWDTAGQERYRAVTSAYYRGA---- 101 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---- 101 (237)
.-.|+|+|..++|||||+.+|.+.. ...++.+.+|....+.-+ +...++.+|-..|...+..++...+...
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 3589999999999999999987654 234566666665554432 1234688999988777777776666532
Q ss_pred cEEEEEEECCChhhHH-HHHHHHHHHHHh-------------------------------c-------------------
Q 026548 102 LGAVVVYDITKRQSFD-HVARWVEELRAH-------------------------------A------------------- 130 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~-~~~~~~~~~~~~-------------------------------~------------------- 130 (237)
-++|+|+|.+.|..+- .+..|+..+..+ .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 3588999999976553 455554443222 0
Q ss_pred ------------CCCCcEEEEEeCCCCCC----CcCC-------CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 131 ------------DSSIRIILIGNKSDLVD----MRAV-------SAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 131 ------------~~~~p~vvv~nK~D~~~----~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
..++|++||++|+|... .... .....+.||..+|+.++.||++...+++-++.+|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 01489999999999632 1111 122356677789999999999999999988988888
Q ss_pred HHHH
Q 026548 188 EIYG 191 (237)
Q Consensus 188 ~i~~ 191 (237)
.++.
T Consensus 262 ~l~~ 265 (472)
T PF05783_consen 262 RLYG 265 (472)
T ss_pred Hhcc
Confidence 7764
No 288
>PRK13768 GTPase; Provisional
Probab=99.31 E-value=1.6e-11 Score=99.21 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=68.8
Q ss_pred EEEEEeCCCcchh---chhhHhhhc---C--CcEEEEEEECCChhhHHHH-H-HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 78 KAQIWDTAGQERY---RAVTSAYYR---G--ALGAVVVYDITKRQSFDHV-A-RWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 78 ~~~l~Dt~G~~~~---~~~~~~~~~---~--~d~~ilv~d~~~~~s~~~~-~-~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
.+.+||+||+.+. +..+..+++ . .+++++|+|+......... . .|+...... ..++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 4789999997653 333333332 2 8999999999764333222 2 222222211 24799999999999865
Q ss_pred CcCCCHHHHHH----------------------------HHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 148 MRAVSAEDAVE----------------------------FAEDQG--LFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 148 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
..+. +...+ ..+..+ .+++++|++++.|+++++++|.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 3221 11111 122333 5789999999999999998887765
No 289
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.31 E-value=1.5e-10 Score=97.37 Aligned_cols=164 Identities=18% Similarity=0.154 Sum_probs=97.5
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC----CCc------------CCCCCC---cceeEEE---EEEEE---CCEEEEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN----EFF------------FDSKST---IGVEFQT---RTVTI---NGKIIKAQ 80 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~~---~~~~~~~~ 80 (237)
...+.|+|+|+.++|||||+|+|.+. ... +++.+. ++++... ..+.+ ++....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34689999999999999999999988 332 112222 2222222 22222 34456788
Q ss_pred EEeCCCcchh--------ch---------------------hhHhhhc-CCcEEEEEE-ECC-----ChhhHHHHHHHHH
Q 026548 81 IWDTAGQERY--------RA---------------------VTSAYYR-GALGAVVVY-DIT-----KRQSFDHVARWVE 124 (237)
Q Consensus 81 l~Dt~G~~~~--------~~---------------------~~~~~~~-~~d~~ilv~-d~~-----~~~s~~~~~~~~~ 124 (237)
++||+|.... .. -+...+. .+|+.|+|. |.+ .....+.-.+|+.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999992210 11 0233455 899999998 653 1222333456667
Q ss_pred HHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 026548 125 ELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196 (237)
Q Consensus 125 ~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~ 196 (237)
.+.. .++|+++++|+.|-... ...+...++..+++++++.+|...-. -+++. .|.+.++-.++-+
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~-~~DI~-~il~~vL~EFPv~ 239 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMR-ESDIL-SVLEEVLYEFPIL 239 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcC-HHHHH-HHHHHHHhcCCce
Confidence 7666 57999999999994321 13444556667788887777653221 22222 4445555555544
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.31 E-value=4.6e-11 Score=100.81 Aligned_cols=159 Identities=17% Similarity=0.236 Sum_probs=105.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCC--------------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDS--------------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV 93 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 93 (237)
..+|+++.+..-|||||+..|+.+.-.... ....+++.-.+..-+..+.+.+.|+|||||..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 458999999999999999999865321110 012234444444444444478999999999999999
Q ss_pred hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-CCHHHHHHHHH-------HcCC
Q 026548 94 TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-VSAEDAVEFAE-------DQGL 165 (237)
Q Consensus 94 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~ 165 (237)
..+.+.-+|++++++|+.+..- ...+..+..... .+.+.|||+||+|.+..+. .-.+++.++.. ++++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCC-CchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 9999999999999999987321 112222232222 4677889999999876431 11223333332 4567
Q ss_pred eEEEEcCCCCC----------CHHHHHHHHHHHHH
Q 026548 166 FFSEASALNGD----------NVDTAFFRLLQEIY 190 (237)
Q Consensus 166 ~~~~~Sa~~~~----------gi~~~~~~l~~~i~ 190 (237)
|++..|+..|. ++..+|+.|++++.
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 88888887664 45666666666553
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.31 E-value=1.2e-11 Score=115.18 Aligned_cols=119 Identities=19% Similarity=0.203 Sum_probs=81.2
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC----------------CCCCcceeEEEEEEEE--------------C
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD----------------SKSTIGVEFQTRTVTI--------------N 73 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~ 73 (237)
..++..+|+|+|+.++|||||+++|+...-... .....+.......+.+ .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 355678999999999999999999975432100 0011111211112222 1
Q ss_pred CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548 74 GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146 (237)
Q Consensus 74 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 146 (237)
+..+.+.|+||||+..|.......++.+|++|+|+|+...-.......| ..+.. .++|++|++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH---CCCCEEEEEECCccc
Confidence 2356789999999999988888889999999999999875433333333 22322 478999999999976
No 292
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.31 E-value=3.1e-11 Score=98.65 Aligned_cols=149 Identities=26% Similarity=0.282 Sum_probs=102.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCc---------------------------------CCCCCCcceeEEEEEEEEC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFF---------------------------------FDSKSTIGVEFQTRTVTIN 73 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 73 (237)
..++.+-+|...-||||||-+|+.+.-. ......++++.....+..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4789999999999999999998754211 1112344555555555544
Q ss_pred CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC-
Q 026548 74 GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS- 152 (237)
Q Consensus 74 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~- 152 (237)
.. +|++-||||+++|......-..-||+.|+++|+...- ....+-...+.... .-..++|.+||+|+.+..+..
T Consensus 85 KR--kFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--l~QTrRHs~I~sLL-GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 85 KR--KFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--LEQTRRHSFIASLL-GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cc--eEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--HHHhHHHHHHHHHh-CCcEEEEEEeeecccccCHHHH
Confidence 43 5789999999999887777788899999999996531 11111112233332 124578889999998654332
Q ss_pred ---HHHHHHHHHHcCCe---EEEEcCCCCCCHHH
Q 026548 153 ---AEDAVEFAEDQGLF---FSEASALNGDNVDT 180 (237)
Q Consensus 153 ---~~~~~~~~~~~~~~---~~~~Sa~~~~gi~~ 180 (237)
.++...|+.++++. ++++||..|+|+..
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 33456688888854 89999999998764
No 293
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.31 E-value=1.1e-11 Score=88.90 Aligned_cols=114 Identities=32% Similarity=0.397 Sum_probs=81.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997777654332 2222 222223456788999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
++.++..+++.+ |...+....+.++|.++++||.|+........+.. ..++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999988766 77777665556788999999999854333333322 235677888888874
No 294
>PTZ00416 elongation factor 2; Provisional
Probab=99.29 E-value=1.8e-11 Score=113.98 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=79.6
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC----------------CCCCcceeEEEEEEEEC--------CEEEEEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD----------------SKSTIGVEFQTRTVTIN--------GKIIKAQ 80 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~ 80 (237)
.+...+|+++|+.++|||||+++|+...-... .....+.......+.+. +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45567999999999999999999986321100 00111111111122222 2246789
Q ss_pred EEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146 (237)
Q Consensus 81 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 146 (237)
|+||||+..|.......++.+|++|+|+|+.+.-..... ..+..+.. .++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence 999999999988888889999999999999885333332 22333333 368999999999986
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.28 E-value=6.3e-11 Score=98.69 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=66.3
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAE 154 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~ 154 (237)
+.+.|+||+|....... ....+|.++++.+....+....+.. .+.. +.-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 56889999997643332 4667999999977555544443322 1222 223899999998653211 112
Q ss_pred HHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 155 DAVEFAED-------QGLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 155 ~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
+....... +..+++.+|++++.|++++++.+.+++.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222221 2357999999999999999999888754
No 296
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.26 E-value=4.3e-11 Score=90.73 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=44.5
Q ss_pred EEEEeCCCcch----hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 026548 79 AQIWDTAGQER----YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143 (237)
Q Consensus 79 ~~l~Dt~G~~~----~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~ 143 (237)
+.|+||||... ...++..++..+|++|+|.+++...+......+....... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 67999999532 3456778889999999999999866655555555554443 34488999984
No 297
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.25 E-value=1.6e-10 Score=92.00 Aligned_cols=140 Identities=16% Similarity=0.114 Sum_probs=82.0
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
.....|+|+|.+|+|||||++.|.+...........+. + ..... ...++.++||||.. .. ....++.+|.++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i~~~--~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TVVTG--KKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EEEec--CCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 44577999999999999999999865321111111111 1 11111 23567899999854 22 334568899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCcCCC---HHHHHH-HHHH--cCCeEEEEcCCCCCC
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRI-ILIGNKSDLVDMRAVS---AEDAVE-FAED--QGLFFSEASALNGDN 177 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~g 177 (237)
+++|++....... ...+..+.. .+.|. ++|+||+|+....... .+..++ +... .+.+++.+||++.-.
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 9999976433222 223333333 35675 4599999986432111 111222 2221 236799999988743
No 298
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.8e-10 Score=93.98 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=96.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCC-------cCCCCCCcceeEEEEEEEE-------CCEEEEEEEEeCCCcchhch
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEF-------FFDSKSTIGVEFQTRTVTI-------NGKIIKAQIWDTAGQERYRA 92 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~ 92 (237)
..+++.++|...||||||.++|..... +.......+.+.....+.+ .++.+++.++|+||+...-.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 459999999999999999999965321 1222233344444444443 35667899999999987776
Q ss_pred hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--C-HHHHHHHHH---Hc---
Q 026548 93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--S-AEDAVEFAE---DQ--- 163 (237)
Q Consensus 93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~-~~~~~~~~~---~~--- 163 (237)
.+.....-.|..++|+|+......+..+-+ .+.... -...|||+||+|...+.+. - .+..++..+ ..
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence 666666777999999999864322222111 122211 2346788899986432211 1 112222222 22
Q ss_pred -CCeEEEEcCCCC----CCHHHHHHHHHHHH
Q 026548 164 -GLFFSEASALNG----DNVDTAFFRLLQEI 189 (237)
Q Consensus 164 -~~~~~~~Sa~~~----~gi~~~~~~l~~~i 189 (237)
+.|++++||..| .++.++.+.|...+
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 268999999999 45555544444443
No 299
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.23 E-value=3.5e-11 Score=95.26 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=63.6
Q ss_pred EEEEEEeCCCcchh------chhh-Hhhhc-CCcEEEEEEECCC---hhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548 77 IKAQIWDTAGQERY------RAVT-SAYYR-GALGAVVVYDITK---RQSFDH-VARWVEELRAHADSSIRIILIGNKSD 144 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~------~~~~-~~~~~-~~d~~ilv~d~~~---~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D 144 (237)
+...|+||||+.+. ...+ ..+.. ..-++++++|... +.+|-. +.+.-. -..+.+.|+|++.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS---ilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS---ILYKTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH---HHHhccCCeEEEEeccc
Confidence 55789999996542 1122 22222 3345677777544 333322 211111 12236899999999999
Q ss_pred CCCC-----cCCCHHHHHHHHHH---------------------cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 145 LVDM-----RAVSAEDAVEFAED---------------------QGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 145 ~~~~-----~~~~~~~~~~~~~~---------------------~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
+.+. |--..+..++.... .++..+-||+.+|.|.+++|..+-+.+
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 8652 22222222222221 134577899999999999998776654
No 300
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.22 E-value=1.1e-10 Score=91.81 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=83.1
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC------CCCCcceeE------EEEEEEE-CC-------------------
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD------SKSTIGVEF------QTRTVTI-NG------------------- 74 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~------~~~~~~~~~------~~~~~~~-~~------------------- 74 (237)
....|+|+|+.|+|||||++++........ .....+.+. ....+.+ +|
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 578899999999999999999875411000 000000000 0000000 11
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE 154 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~ 154 (237)
....+.|++|.|.-.... .+.-..+..+.|+|+.+.+.. +... ... ...|.++++||+|+.+......+
T Consensus 101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~--~~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDK--PLKY-PGM-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccch--hhhh-HhH-----HhhCCEEEEEHHHccccchhhHH
Confidence 013455677766211111 111223445667777654321 1111 111 24567999999999653222334
Q ss_pred HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 155 DAVEFAEDQG--LFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 155 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
...+..++.+ .+++++||+++.|++++|+++.+.
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4554454443 789999999999999999998774
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.22 E-value=1.5e-10 Score=97.17 Aligned_cols=155 Identities=13% Similarity=0.137 Sum_probs=74.1
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCC--cceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhh-----h
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKST--IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAY-----Y 98 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-----~ 98 (237)
..++|+|+|.+|+|||||||+|.+-.-.. ...++ +.++.....+..+..+ .+.+||.||..........| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 47899999999999999999998743222 22221 1222233333333322 47799999954433333333 4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC--C-----CCcCCCHH----HHHHHHH----Hc
Q 026548 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL--V-----DMRAVSAE----DAVEFAE----DQ 163 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~--~-----~~~~~~~~----~~~~~~~----~~ 163 (237)
..-|.+|++.+-.=... + ......+.. .+.|+++|-+|+|. . ..+..+.+ .+++.+. +.
T Consensus 113 ~~yD~fiii~s~rf~~n--d-v~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISSERFTEN--D-VQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEESSS--HH--H-HHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeCCCCchh--h-HHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 56787777665332221 1 122233444 47899999999995 1 11233333 3333322 23
Q ss_pred CC---eEEEEcCCCCCC--HHHHHHHHHHH
Q 026548 164 GL---FFSEASALNGDN--VDTAFFRLLQE 188 (237)
Q Consensus 164 ~~---~~~~~Sa~~~~g--i~~~~~~l~~~ 188 (237)
++ ++|.+|..+-.. ...+.+.|.+.
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~d 216 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKD 216 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHH
Confidence 43 488999876543 44444444443
No 302
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.22 E-value=6.2e-12 Score=100.55 Aligned_cols=111 Identities=18% Similarity=0.145 Sum_probs=58.3
Q ss_pred EEEEEeCCCcchhchhhHhhh--------cCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548 78 KAQIWDTAGQERYRAVTSAYY--------RGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 148 (237)
.+.|+|||||.+....+.... ...-++++++|+....+ ...+..++..+......+.|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 577999999988766555433 34556889999764322 222333333333322257999999999999762
Q ss_pred c-------CCC------------HHHHHHHHHH---cC-C-eEEEEcCCCCCCHHHHHHHHHHH
Q 026548 149 R-------AVS------------AEDAVEFAED---QG-L-FFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 149 ~-------~~~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
. -.. .....+++.- .+ . .++.+|+.+++|+.+++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 1 000 0111122222 23 3 68999999999999998666544
No 303
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.19 E-value=2.8e-10 Score=93.19 Aligned_cols=140 Identities=16% Similarity=0.232 Sum_probs=76.7
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC----------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDS----------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA---- 92 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---- 92 (237)
-.++|+|+|..|+|||||+|.|++....... ..+.........+.-++..+.+.++||||......
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999987654332 12222333333445578888999999999221100
Q ss_pred --hhHhhh---------------------cCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548 93 --VTSAYY---------------------RGALGAVVVYDITKR-QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148 (237)
Q Consensus 93 --~~~~~~---------------------~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 148 (237)
....++ .++|++||.++.+.. -.-.++ ..+.... ..+++|-|+.|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~Ls-~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRLS-KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHHT-TTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHhc-ccccEEeEEecccccCH
Confidence 010111 477999999998652 111222 2233333 36889999999997542
Q ss_pred cCC--CHHHHHHHHHHcCCeEEEEc
Q 026548 149 RAV--SAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 149 ~~~--~~~~~~~~~~~~~~~~~~~S 171 (237)
.+. ..+.+.+.....++.+|...
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHHcCceeeccc
Confidence 221 13334455556777766543
No 304
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.17 E-value=1.7e-09 Score=89.78 Aligned_cols=127 Identities=17% Similarity=0.263 Sum_probs=90.0
Q ss_pred EEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh-------hhHHHHHHHHHHHHHhcC----CCC
Q 026548 66 QTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR-------QSFDHVARWVEELRAHAD----SSI 134 (237)
Q Consensus 66 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~-------~s~~~~~~~~~~~~~~~~----~~~ 134 (237)
....+.+.+ +.+.++|.+|+...+..|..++.+++++|+|+++++. ....++..-++.+...+. .+.
T Consensus 186 ~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~t 263 (354)
T KOG0082|consen 186 VEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANT 263 (354)
T ss_pred eEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccC
Confidence 334444555 5688999999999999999999999999999998862 223444444444444432 578
Q ss_pred cEEEEEeCCCCCCC---------------cCCCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 135 RIILIGNKSDLVDM---------------RAVSAEDAVEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 135 p~vvv~nK~D~~~~---------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
++++++||.|+-++ ..-..+++..+... ..+.+..+.|.+..+|+.+|.+..+.|
T Consensus 264 siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~I 343 (354)
T KOG0082|consen 264 SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTI 343 (354)
T ss_pred cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHH
Confidence 99999999998431 11234444444331 134577789999999999999999988
Q ss_pred HHhhh
Q 026548 190 YGAVS 194 (237)
Q Consensus 190 ~~~~~ 194 (237)
....-
T Consensus 344 i~~nl 348 (354)
T KOG0082|consen 344 IQNNL 348 (354)
T ss_pred HHHHH
Confidence 77654
No 305
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.16 E-value=1.4e-09 Score=96.42 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=76.6
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hh-
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AV- 93 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~- 93 (237)
.+.+..++|+|+|.+|+||||++|+|++........ ...+..........++ ..+.++||||..... ..
T Consensus 113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence 455667899999999999999999999987543322 1222233233334455 467899999955321 11
Q ss_pred --hHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 026548 94 --TSAYYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSS--IRIILIGNKSDLVD 147 (237)
Q Consensus 94 --~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~vvv~nK~D~~~ 147 (237)
...++. ..|++|+|..++.......-..+++.+...++.+ ..+|||+|+.|...
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 122333 5899999988764322112224555555554422 45889999999754
No 306
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.15 E-value=8.7e-11 Score=95.05 Aligned_cols=168 Identities=17% Similarity=0.139 Sum_probs=112.8
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch---------hchhh
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER---------YRAVT 94 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~ 94 (237)
......-|.|+|..|+|||||+++|.+-...+...-..+.+.+......+... .+.+.||.|.-. |....
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATL 252 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHH
Confidence 33445579999999999999999999777666665555566666666665443 367999999432 22222
Q ss_pred HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc----EEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEE
Q 026548 95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR----IILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEA 170 (237)
Q Consensus 95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.-...+|.++.|.|+++|..-......+..+....-...| ++=|-||+|...... ..| .++ .+.+
T Consensus 253 -eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e~E-------~n~--~v~i 321 (410)
T KOG0410|consen 253 -EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-EEE-------KNL--DVGI 321 (410)
T ss_pred -HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-ccc-------cCC--cccc
Confidence 2357899999999999988766666666655554322233 345667887644221 111 121 5678
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhccccccCCC
Q 026548 171 SALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203 (237)
Q Consensus 171 Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~~ 203 (237)
|+.+|+|++++...+-.++.....-.+......
T Consensus 322 saltgdgl~el~~a~~~kv~~~t~~~e~~Lr~d 354 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVASETTVDEDQLRND 354 (410)
T ss_pred ccccCccHHHHHHHHHHHhhhhheeeeEEeecC
Confidence 999999999999888888777766555444443
No 307
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3.6e-10 Score=97.83 Aligned_cols=155 Identities=24% Similarity=0.254 Sum_probs=100.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCC--------------------CcCCC---------CCCcceeEEEEEEEECCEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNE--------------------FFFDS---------KSTIGVEFQTRTVTINGKI 76 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~--------------------~~~~~---------~~~~~~~~~~~~~~~~~~~ 76 (237)
...++++|+|+..+|||||+.+|+..- ....| ....++...+....++-..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 357999999999999999998875421 11000 1222344444444444444
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh---hHHHH--HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SFDHV--ARWVEELRAHADSSIRIILIGNKSDLVDMRAV 151 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 151 (237)
..+.|+|+||+..|......-...+|+.++|+|++... .|+.. .+....+.+.. .--.++|++||+|+.++.+-
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccHH
Confidence 66889999999999888888889999999999998622 22211 11112222222 13457899999999876554
Q ss_pred CHHHHH----HHH-HHcC-----CeEEEEcCCCCCCHHHH
Q 026548 152 SAEDAV----EFA-EDQG-----LFFSEASALNGDNVDTA 181 (237)
Q Consensus 152 ~~~~~~----~~~-~~~~-----~~~~~~Sa~~~~gi~~~ 181 (237)
..+++. .|. +..| +.+++||+..|.|+-..
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 444443 344 3333 46999999999987543
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.1e-09 Score=99.18 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=84.2
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC-----C-----------CCCcceeEEEEEEEECCE-EEEEEEEeCCCc
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD-----S-----------KSTIGVEFQTRTVTINGK-IIKAQIWDTAGQ 87 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~ 87 (237)
..+..+|.++|+..+|||||..+|+...-... . ....+.+......++... .+.++|+|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 45678999999999999999999864321110 0 011133333333333333 478999999999
Q ss_pred chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
-+|.....+.++-+|++++|+|+...-..+.-.-|..... .++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence 9999999999999999999999987543333333433332 4799999999999764
No 309
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.12 E-value=4e-10 Score=85.35 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=55.6
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEEEEcCCCCCCHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFSEASALNGDNVDT 180 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~ 180 (237)
.-|+|+|++..+.... +....+. .-=++|+||.|+...-....+...+-+++.+ .+++++|.++|.|+++
T Consensus 120 ~~v~VidvteGe~~P~--K~gP~i~------~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 120 LRVVVIDVTEGEDIPR--KGGPGIF------KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred eEEEEEECCCCCCCcc--cCCCcee------EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHH
Confidence 6788888876532110 0000010 1237999999998877777787777777664 7899999999999999
Q ss_pred HHHHHHHHH
Q 026548 181 AFFRLLQEI 189 (237)
Q Consensus 181 ~~~~l~~~i 189 (237)
++.++....
T Consensus 192 ~~~~i~~~~ 200 (202)
T COG0378 192 WLRFIEPQA 200 (202)
T ss_pred HHHHHHhhc
Confidence 998887653
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.12 E-value=7.4e-10 Score=91.87 Aligned_cols=102 Identities=20% Similarity=0.053 Sum_probs=63.0
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH--H
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA--E 154 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~--~ 154 (237)
+.+.|+||+|..... ...+..+|.++++..... .+.+......+ .++|.++++||+|+........ .
T Consensus 127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHHH
Confidence 668899999854222 235667888888754332 23333333322 2467899999999875321100 0
Q ss_pred ----HHHHHHH---HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 155 ----DAVEFAE---DQGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 155 ----~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
....+.. .+..+++.+||+++.|++++++++.+..
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 0011111 1234699999999999999999988863
No 311
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.11 E-value=1e-09 Score=87.59 Aligned_cols=119 Identities=16% Similarity=0.241 Sum_probs=70.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeE-----------EEEEEEECC--------------------
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEF-----------QTRTVTING-------------------- 74 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-------------------- 74 (237)
.....|+|+|+.|+||||+++++.+..+.+......+... +...+...+
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 3456899999999999999999998763322211111000 000000000
Q ss_pred -------------------EEEEEEEEeCCCcch-------------hchhhHhhhc-CCcEEEEEEECCChhhHHHHHH
Q 026548 75 -------------------KIIKAQIWDTAGQER-------------YRAVTSAYYR-GALGAVVVYDITKRQSFDHVAR 121 (237)
Q Consensus 75 -------------------~~~~~~l~Dt~G~~~-------------~~~~~~~~~~-~~d~~ilv~d~~~~~s~~~~~~ 121 (237)
....+.|+|+||... ...+...+++ ..+++++|+|++..-.-.....
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 003578999999542 1224555667 4568999998865322222223
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 122 WVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 122 ~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
..+.+.. .+.|+++|+||.|...
T Consensus 184 ia~~ld~---~~~rti~ViTK~D~~~ 206 (240)
T smart00053 184 LAKEVDP---QGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHH---cCCcEEEEEECCCCCC
Confidence 3333332 5789999999999865
No 312
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.7e-10 Score=92.15 Aligned_cols=162 Identities=18% Similarity=0.145 Sum_probs=102.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC---CCCCCcceeEEEE------------------EEEEC--C----EEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF---DSKSTIGVEFQTR------------------TVTIN--G----KIIK 78 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~------------------~~~~~--~----~~~~ 78 (237)
+..++|.++|+..=|||||.++|.+--... .-...+++..... .-... + -.=.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 457899999999999999999997632111 1111111111000 00000 0 0114
Q ss_pred EEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CCCHHHH
Q 026548 79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR--AVSAEDA 156 (237)
Q Consensus 79 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~~~~~~ 156 (237)
+.|.|.||++-.-...-.-..-+|++++|+.++.+-.-......+-.+.-. .-..++|+-||+|+...+ ..+.+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHH
Confidence 779999999877665555566789999999999732222222222222222 134589999999997543 2345567
Q ss_pred HHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 157 VEFAED---QGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 157 ~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
++|.+. .+.|++.+||..+.||+-++++|.+.|
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 777764 367899999999999998777776655
No 313
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=4.9e-09 Score=87.13 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=61.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC----------------EEEEEEEEeCCCcchh-
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING----------------KIIKAQIWDTAGQERY- 90 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~Dt~G~~~~- 90 (237)
.+++.++|-||+|||||+|+++.........|..+++.....+.+.. .+..+.++|.+|.-.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999999886555557777766666555422 2356889999984322
Q ss_pred ---chhhH---hhhcCCcEEEEEEECC
Q 026548 91 ---RAVTS---AYYRGALGAVVVYDIT 111 (237)
Q Consensus 91 ---~~~~~---~~~~~~d~~ilv~d~~ 111 (237)
..+-. .-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22333 3458999999999965
No 314
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.09 E-value=6.3e-10 Score=86.10 Aligned_cols=146 Identities=21% Similarity=0.251 Sum_probs=92.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-----hhHhhhcCC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-----VTSAYYRGA 101 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~ 101 (237)
.-||+++|..||||||+=-.+..+-... ...++.++++....+.+-|. ..+.+||++|++.+-. .....+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 3489999999999999765555333222 22344455665555555554 4589999999885432 334578999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCC--cCCCHHHHHHHHH----HcCCeEEEEcCC
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHA--DSSIRIILIGNKSDLVDM--RAVSAEDAVEFAE----DQGLFFSEASAL 173 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~--~~~~~~~~~~~~~----~~~~~~~~~Sa~ 173 (237)
+++|+|||+...+-..++..+...+.... .+...+++..+|.|+... ++...+.-.+... ..++.++.+|.+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 99999999998766666655555333322 267778999999998653 2222222222222 234557777755
Q ss_pred C
Q 026548 174 N 174 (237)
Q Consensus 174 ~ 174 (237)
+
T Consensus 163 D 163 (295)
T KOG3886|consen 163 D 163 (295)
T ss_pred h
Confidence 3
No 315
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.5e-09 Score=95.19 Aligned_cols=119 Identities=21% Similarity=0.268 Sum_probs=85.4
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCC-----------------CcceeEEEEEEEE---CCEEEEEEEE
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-----------------TIGVEFQTRTVTI---NGKIIKAQIW 82 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~l~ 82 (237)
.......+|+++|+-..|||+|+..|..+..+..+.. ..++......+.+ .++.+-++++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 3556788999999999999999999987765433211 1111112222222 4666779999
Q ss_pred eCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548 83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145 (237)
Q Consensus 83 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 145 (237)
||||+-.|.......++.+|++++++|+.+.-.+..-+-..+.+. ...|+++|+||.|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence 999999999999999999999999999988655543222222222 47999999999995
No 316
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.04 E-value=9.1e-09 Score=85.04 Aligned_cols=162 Identities=13% Similarity=0.209 Sum_probs=96.7
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC----------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh---ch
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFD----------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY---RA 92 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~ 92 (237)
.-.++|+++|+.|+|||||+|.|++...... ..+++....+...+.-++..+.+.++||||...+ ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4579999999999999999999998743322 1233344444445555788889999999992221 00
Q ss_pred hh-----------Hhhh--------------cCCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548 93 VT-----------SAYY--------------RGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLV 146 (237)
Q Consensus 93 ~~-----------~~~~--------------~~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~ 146 (237)
.| ..++ .++|+++|.+..+.. .+..+ ...+..+. ..+.+|-|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence 11 1111 467999999987652 22222 12222233 356788889999975
Q ss_pred CCcC--CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548 147 DMRA--VSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~ 194 (237)
...+ ...+.+++....+++++|. ..+.+..+.-.....+.+...+|
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~~~e~~e~~~~l~~~~P 223 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD--PYDPEDDEDESLEENQDLRSLIP 223 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC--CCCccccchhhHHHHHHHhhcCC
Confidence 4322 2244566677788999775 23333332222234444444443
No 317
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=3e-09 Score=89.48 Aligned_cols=131 Identities=20% Similarity=0.182 Sum_probs=86.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCC---------------C-----CCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFD---------------S-----KSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 89 (237)
..+|+-+|.+|||||-..|+.-.-... + ....++.+....+.++.....++|.||||++.
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 688999999999999998752110000 0 01123444444444554457788999999999
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF 166 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 166 (237)
|..-+=+.+..+|.+++|+|+...-.-+ ..++++..+. .++|++=++||.|... .-+.+...++...+++.
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLfeVcrl---R~iPI~TFiNKlDR~~--rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLFEVCRL---RDIPIFTFINKLDREG--RDPLELLDEIEEELGIQ 164 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccCccHH-HHHHHHHHhh---cCCceEEEeecccccc--CChHHHHHHHHHHhCcc
Confidence 9988878889999999999987632211 1222232222 6899999999999765 23455555666655543
No 318
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.03 E-value=1.4e-09 Score=93.51 Aligned_cols=163 Identities=20% Similarity=0.330 Sum_probs=122.0
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..+|+.|+|..++|||.|+.+++.+.+.....+.- ..+.+++.+++....+.+.|-+|. ....|...+|++||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCC-----chhhhhhhccceEE
Confidence 46899999999999999999999998876654432 245577777777777778887772 23346778999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC--CcCCCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVD--MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~ 182 (237)
||.+.+..+++.+..+...+..+.. ..+|+++++++.-... .+........+++.. ..+.||++++.+|.++..+|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 9999999999998877777654443 5788888887754322 223334444444444 44779999999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 026548 183 FRLLQEIYGAVSKK 196 (237)
Q Consensus 183 ~~l~~~i~~~~~~~ 196 (237)
+.++.++.....+.
T Consensus 182 ~~~~~k~i~~~~~q 195 (749)
T KOG0705|consen 182 QEVAQKIVQLRKYQ 195 (749)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999887776554
No 319
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.01 E-value=1.7e-09 Score=88.01 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=58.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEE---------------EEEEEEeCCCcchh----c
Q 026548 31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI---------------IKAQIWDTAGQERY----R 91 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~----~ 91 (237)
|+++|.||+|||||+|+|++........+..+.+.....+.+.+.. .++.++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999988755555666666666666665432 25889999994422 1
Q ss_pred hhhH---hhhcCCcEEEEEEECC
Q 026548 92 AVTS---AYYRGALGAVVVYDIT 111 (237)
Q Consensus 92 ~~~~---~~~~~~d~~ilv~d~~ 111 (237)
.+.. ..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 2222 2357899999999863
No 320
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.2e-08 Score=84.91 Aligned_cols=161 Identities=15% Similarity=0.205 Sum_probs=96.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC---------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh-------
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD---------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY------- 90 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------- 90 (237)
-.+.++++|+.|.|||||+|.|+...+... ...+.........+.-+|..++++++||||....
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 468999999999999999999988744322 1123333334444444777889999999992211
Q ss_pred chh-------hHh-----------hh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 91 RAV-------TSA-----------YY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 91 ~~~-------~~~-----------~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
... ... .+ .++|+++|.+..+.. .+..+.- ..+.... ..+.+|-|+.|+|.....+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di--~~Mk~l~-~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDI--EFMKKLS-KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhH--HHHHHHh-ccccccceeeccccCCHHH
Confidence 110 111 12 378999999997652 1222110 1122222 3678888899999754332
Q ss_pred C--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548 151 V--SAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 151 ~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~ 194 (237)
+ ..+.+.+.+...++++|....... +..+....+.+...+|
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~P 218 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIP 218 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCC
Confidence 2 234455666678888776654433 5555455555555444
No 321
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=9.9e-09 Score=86.60 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=106.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCc---CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFF---FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
-|+..|+-.-|||||++++.+...+ ......++.+........++ ..+.|+|.||++++-......+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4788999999999999999876543 23345555666555555544 368899999999998888888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCCCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAVSAEDAVEFAEDQ---GLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~ 182 (237)
|++.++.-..+..+. +..+ .. .+++ .+||+||+|..+.. ...+...++...+ ..+++.+|+++|.||+++.
T Consensus 80 vV~~deGl~~qtgEh-L~iL-dl--lgi~~giivltk~D~~d~~-r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 80 VVAADEGLMAQTGEH-LLIL-DL--LGIKNGIIVLTKADRVDEA-RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred EEeCccCcchhhHHH-HHHH-Hh--cCCCceEEEEeccccccHH-HHHHHHHHHHhhcccccccccccccccCCCHHHHH
Confidence 999976333222211 1112 11 2334 58999999987532 1122233333333 3568999999999999999
Q ss_pred HHHHHHH
Q 026548 183 FRLLQEI 189 (237)
Q Consensus 183 ~~l~~~i 189 (237)
+.|....
T Consensus 155 ~~l~~L~ 161 (447)
T COG3276 155 NELIDLL 161 (447)
T ss_pred HHHHHhh
Confidence 9988877
No 322
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=3.9e-09 Score=82.36 Aligned_cols=169 Identities=18% Similarity=0.203 Sum_probs=101.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh---hHhhhcCCcEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV---TSAYYRGALGA 104 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~d~~ 104 (237)
..+|+++|...+||||+.........+-...-...+. ....-.+...-+.+.+||.||+-.+-.. ....++++.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTs-ki~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTS-KITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccC-cccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 4579999999999999887766655332211000000 0000111223357889999997665432 35678999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCc-CCCH-HHHH-----HHHH----HcCCeEEEEc
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMR-AVSA-EDAV-----EFAE----DQGLFFSEAS 171 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~-~~~~-~~~~-----~~~~----~~~~~~~~~S 171 (237)
|+|+|+.+. ..+.+.++...+.+..+ +++.+=|++.|.|...+. .+.. -.+. +++. ...+.++.+|
T Consensus 106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 999998763 22333333333333222 678888999999965432 1110 0111 1111 1223455565
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccccc
Q 026548 172 ALNGDNVDTAFFRLLQEIYGAVSKKELE 199 (237)
Q Consensus 172 a~~~~gi~~~~~~l~~~i~~~~~~~~~~ 199 (237)
....+|-++|..+++++..+++.-|..
T Consensus 185 -IyDHSIfEAFSkvVQkLipqLptLEnl 211 (347)
T KOG3887|consen 185 -IYDHSIFEAFSKVVQKLIPQLPTLENL 211 (347)
T ss_pred -ecchHHHHHHHHHHHHHhhhchhHHHH
Confidence 567889999999999999999876543
No 323
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.94 E-value=3.7e-08 Score=77.46 Aligned_cols=88 Identities=26% Similarity=0.207 Sum_probs=65.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-------hhHhhh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-------VTSAYY 98 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~ 98 (237)
....+|+++|-|.+|||||+..+...+........++.+..+..+.++|. .+++.|.||.-.-.+ ......
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEe
Confidence 34579999999999999999999887765554455566677777777774 577999999433222 223456
Q ss_pred cCCcEEEEEEECCChhh
Q 026548 99 RGALGAVVVYDITKRQS 115 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s 115 (237)
+.+|.+++|.|++..+.
T Consensus 138 rtaDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 138 RTADLILMVLDATKSED 154 (364)
T ss_pred ecccEEEEEecCCcchh
Confidence 88999999999987543
No 324
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.93 E-value=5.6e-10 Score=88.58 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=85.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC------CC-----cCCCCCCc---------------ceeEEEEEEEECC-----
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN------EF-----FFDSKSTI---------------GVEFQTRTVTING----- 74 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~------~~-----~~~~~~~~---------------~~~~~~~~~~~~~----- 74 (237)
.+...|.|-|+||+|||||+++|... ++ ++.+..+- ....+.+.+--.|
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35679999999999999999987532 11 11111000 0112222221111
Q ss_pred -------------EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 026548 75 -------------KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141 (237)
Q Consensus 75 -------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~n 141 (237)
..+.++|+.|.|--+... ....-+|.+++|+.....+..+-++.-+-++. =++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEe
Confidence 115577888877443333 23566999999999877666655544444432 289999
Q ss_pred CCCCCCCcCCCHHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 142 KSDLVDMRAVSAEDAVEFAED-------QGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 142 K~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
|+|....... ..+....... |..+++.|||.++.|++++++.|.++-
T Consensus 176 KaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 176 KADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp --SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 9996542211 1122222221 235799999999999999998887754
No 325
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.93 E-value=1.6e-08 Score=81.58 Aligned_cols=157 Identities=16% Similarity=0.115 Sum_probs=94.3
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCC-----------CcCCCCCCcc---------------eeEEEEEEEE----
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNE-----------FFFDSKSTIG---------------VEFQTRTVTI---- 72 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~-----------~~~~~~~~~~---------------~~~~~~~~~~---- 72 (237)
....+...|.+-|.||+|||||+.+|...- +++.+..+-+ ...+.+...-
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 344556789999999999999999875321 1222211110 1111111111
Q ss_pred --------------CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEE
Q 026548 73 --------------NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIIL 138 (237)
Q Consensus 73 --------------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vv 138 (237)
+...+.++|+.|.|--+... ....-+|.+++|.-..-.+..+-++.-+-++.. ++
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~ 194 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------II 194 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------ee
Confidence 11235677888887544443 234558999988877777766666654444443 79
Q ss_pred EEeCCCCCCCcCC--CHHHHHHHHH------HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 139 IGNKSDLVDMRAV--SAEDAVEFAE------DQGLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 139 v~nK~D~~~~~~~--~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
|+||.|..+.... ....+.++.. .|.-+++.+||..|.|++++++.+.++.-
T Consensus 195 vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 195 VINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred eEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 9999996442111 0111222221 23356999999999999999988877643
No 326
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.90 E-value=3.5e-09 Score=86.22 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=40.4
Q ss_pred CcEEEEEeCCCCCCCcCCCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 134 IRIILIGNKSDLVDMRAVSAEDAVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 134 ~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
..-++|+||+|+........+...+..+.. +.+++.+|+++|.|++++++||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999753222344444444443 4779999999999999999988763
No 327
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=3.4e-08 Score=79.31 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=91.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcC----------------CCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKN----------------EFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY 90 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 90 (237)
..++|..+|...-|||||..++..- +.+......++++....++...... +-..|+||+..|
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rh--yahVDcPGHaDY 88 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRH--YAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCce--EEeccCCChHHH
Confidence 3689999999999999999887431 1111222333444444444444443 558999999999
Q ss_pred chhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHc
Q 026548 91 RAVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQ 163 (237)
Q Consensus 91 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~ 163 (237)
-.....-..++|+.|+|+++++ +++-+.+ ...+. -++| +++++||+|+.++.+. -..+++++...+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 8877667788999999999998 4443332 11111 3665 6688999999875432 234577777777
Q ss_pred CC-----eEEEEcCC
Q 026548 164 GL-----FFSEASAL 173 (237)
Q Consensus 164 ~~-----~~~~~Sa~ 173 (237)
++ |++.-||.
T Consensus 162 ~f~gd~~Pii~gSal 176 (394)
T COG0050 162 GFPGDDTPIIRGSAL 176 (394)
T ss_pred CCCCCCcceeechhh
Confidence 65 46666664
No 328
>PRK12289 GTPase RsgA; Reviewed
Probab=98.86 E-value=2.1e-08 Score=84.57 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=67.5
Q ss_pred hhhHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEE
Q 026548 92 AVTSAYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEA 170 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.+....+.++|.+++|+|+.++. ....+.+|+..+.. .++|++||+||+|+....+ .+...+....+++.++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34445688999999999998765 44456677665533 4799999999999964221 122233345678899999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 026548 171 SALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 171 Sa~~~~gi~~~~~~l~~~ 188 (237)
||+++.|++++++.+...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999887654
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.86 E-value=1.3e-08 Score=76.23 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=65.0
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEE
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSE 169 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (237)
++.++...++++|++|+|+|++++...... .+...+.. .+.|+++|+||+|+..... .+....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 456677888899999999999875432221 22222221 3689999999999854211 11122333445678999
Q ss_pred EcCCCCCCHHHHHHHHHHHHH
Q 026548 170 ASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 170 ~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999988877654
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.86 E-value=2.1e-08 Score=77.68 Aligned_cols=94 Identities=21% Similarity=0.132 Sum_probs=65.6
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH-----HHcC
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFA-----EDQG 164 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 164 (237)
+..++..+++++|++++|+|+++.... |...+.... .+.|+++|+||+|+.... ...+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence 577788889999999999999875421 222222111 468999999999986432 2233343443 2333
Q ss_pred C---eEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 165 L---FFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 165 ~---~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
. .++.+||+++.|++++++.|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 5899999999999999998887653
No 331
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.83 E-value=6.4e-08 Score=83.29 Aligned_cols=122 Identities=16% Similarity=0.242 Sum_probs=82.2
Q ss_pred EEEEEEE-CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh-------hhHHHHHHHHHHHHHhcC----CC
Q 026548 66 QTRTVTI-NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR-------QSFDHVARWVEELRAHAD----SS 133 (237)
Q Consensus 66 ~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~-------~s~~~~~~~~~~~~~~~~----~~ 133 (237)
....+.+ .+ ..+.++|++|+...+..|..++.+++++|||+++++- ....++..-+..+..... .+
T Consensus 226 ~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~ 303 (389)
T PF00503_consen 226 TEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKN 303 (389)
T ss_dssp EEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred eEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccccc
Confidence 3334445 44 4678999999999999999999999999999998751 122334333333333222 57
Q ss_pred CcEEEEEeCCCCCC------C----------cC--CCHHHHHHHHHH------------cCCeEEEEcCCCCCCHHHHHH
Q 026548 134 IRIILIGNKSDLVD------M----------RA--VSAEDAVEFAED------------QGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 134 ~p~vvv~nK~D~~~------~----------~~--~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
.|++|++||.|+.. . .. -..+.+.++... ..+.++.|+|.+...+..+|+
T Consensus 304 ~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~ 383 (389)
T PF00503_consen 304 TPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFN 383 (389)
T ss_dssp SEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHH
T ss_pred CceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHH
Confidence 99999999999622 1 01 244566665542 123467889999999999998
Q ss_pred HHHHHH
Q 026548 184 RLLQEI 189 (237)
Q Consensus 184 ~l~~~i 189 (237)
.+.+.|
T Consensus 384 ~v~~~i 389 (389)
T PF00503_consen 384 AVKDII 389 (389)
T ss_dssp HHHHHH
T ss_pred HhcCcC
Confidence 887654
No 332
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=5.5e-08 Score=80.40 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=84.0
Q ss_pred CCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEE------CCEE-----------------
Q 026548 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTI------NGKI----------------- 76 (237)
Q Consensus 21 ~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~----------------- 76 (237)
.....+...=|+++|.-..||||||+-|+...++.... +..++++....+.- +|..
T Consensus 51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 33556667789999999999999999999999875433 33333443332221 2211
Q ss_pred ----------------EEEEEEeCCCcc-----------hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHh
Q 026548 77 ----------------IKAQIWDTAGQE-----------RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAH 129 (237)
Q Consensus 77 ----------------~~~~l~Dt~G~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~ 129 (237)
-.+.++||||.- .|.....-|+.++|.+|++||+...+--++....+..++.+
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 237799999922 23344556789999999999987655445555555665553
Q ss_pred cCCCCcEEEEEeCCCCCC
Q 026548 130 ADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 130 ~~~~~p~vvv~nK~D~~~ 147 (237)
.-.+-||+||+|+.+
T Consensus 211 ---EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 211 ---EDKIRVVLNKADQVD 225 (532)
T ss_pred ---cceeEEEeccccccC
Confidence 445778999999865
No 333
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=7.5e-08 Score=75.23 Aligned_cols=146 Identities=18% Similarity=0.270 Sum_probs=82.1
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC---------CCCcceeEEEEEEEECCEEEEEEEEeCCCcch-------
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS---------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQER------- 89 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 89 (237)
...++|+|+|..|.|||||+|.|...++.... ..|.........+.-++-..++.++||||...
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 44689999999999999999999866543311 11222222222233367677899999999221
Q ss_pred -----------hchhhH--------hhh--cCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCC-
Q 026548 90 -----------YRAVTS--------AYY--RGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLV- 146 (237)
Q Consensus 90 -----------~~~~~~--------~~~--~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~- 146 (237)
|..... ..+ .+++.++|.+..+. .++..+. .++..+.+ -+.+|-|+-|+|-.
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLT 198 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeeccccc
Confidence 111111 111 36677888887764 2233221 22222222 34577788899943
Q ss_pred -CCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548 147 -DMRAVSAEDAVEFAEDQGLFFSEASALNGD 176 (237)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (237)
+++..-.+.+++-...+++.++.-...+-+
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 222222334555556678877665544433
No 334
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.6e-07 Score=83.13 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=90.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEE--------------------------------------
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQT-------------------------------------- 67 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~-------------------------------------- 67 (237)
+..-||++.|..++||||++|+++..++-+......+.-+..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 345699999999999999999998776655443222111100
Q ss_pred -----EEEEECCEE-----EEEEEEeCCCcc---hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC
Q 026548 68 -----RTVTINGKI-----IKAQIWDTAGQE---RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSI 134 (237)
Q Consensus 68 -----~~~~~~~~~-----~~~~l~Dt~G~~---~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 134 (237)
..+.++... -.+.++|.||.+ ....-...+...+|++|+|.++.+..+.... +.+......+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek----~Ff~~vs~~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK----QFFHKVSEEKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH----HHHHHhhccCC
Confidence 000111110 025689999944 3444556778899999999999876655443 33344443455
Q ss_pred cEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC--------eEEEEcCC
Q 026548 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGL--------FFSEASAL 173 (237)
Q Consensus 135 p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~ 173 (237)
.++|+.||+|.........++++.....++. .+|+||++
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 6788889999876655556666655444332 37888865
No 335
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.77 E-value=3.5e-08 Score=81.35 Aligned_cols=87 Identities=20% Similarity=0.145 Sum_probs=67.3
Q ss_pred hhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC
Q 026548 96 AYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN 174 (237)
Q Consensus 96 ~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 174 (237)
..+.++|.+++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+..... ...........+.+++.+||++
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~ 148 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT 148 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence 3578999999999999887 77888888876654 4689999999999865311 1122333455788999999999
Q ss_pred CCCHHHHHHHHHH
Q 026548 175 GDNVDTAFFRLLQ 187 (237)
Q Consensus 175 ~~gi~~~~~~l~~ 187 (237)
+.|+++++..+..
T Consensus 149 g~gi~~L~~~L~~ 161 (287)
T cd01854 149 GEGLDELREYLKG 161 (287)
T ss_pred CccHHHHHhhhcc
Confidence 9999998877664
No 336
>PRK12288 GTPase RsgA; Reviewed
Probab=98.74 E-value=5.5e-08 Score=81.98 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=67.6
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC-CHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV-SAEDAVEFAEDQGLFFSEASALNGD 176 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (237)
..++|.+++|+++....++..+..|+..+.. .++|++||+||+|+....+. ......+.....+++++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888899999999875543 47899999999999653211 1222333445678899999999999
Q ss_pred CHHHHHHHHHHH
Q 026548 177 NVDTAFFRLLQE 188 (237)
Q Consensus 177 gi~~~~~~l~~~ 188 (237)
|++++++.|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999888653
No 337
>PRK00098 GTPase RsgA; Reviewed
Probab=98.73 E-value=4.8e-08 Score=80.98 Aligned_cols=87 Identities=23% Similarity=0.214 Sum_probs=64.9
Q ss_pred hhcCCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548 97 YYRGALGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG 175 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (237)
.+.++|.+++|+|+.++..... +.+|+..+.. .++|++||+||+|+..... ..+...+.....+++++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4689999999999988765444 4677666544 4799999999999963221 122344455667889999999999
Q ss_pred CCHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQ 187 (237)
Q Consensus 176 ~gi~~~~~~l~~ 187 (237)
.|+++++..+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999998877643
No 338
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.72 E-value=4e-08 Score=74.78 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=40.9
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
....++++|+|.||+|||||+|+|.+....... +..+.+.....+.++. .+.++||||
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence 344689999999999999999999987754432 2233333344444443 477999998
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.70 E-value=4.2e-08 Score=72.28 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=39.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 87 (237)
+++++|.+|+|||||+|+|.+....... ...+.+.....+.+++ .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999988765332 2223334445555554 4679999995
No 340
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.70 E-value=8.9e-08 Score=76.38 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=93.2
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCC----------cchhc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAG----------QERYR 91 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~ 91 (237)
-+.+..++++++|..|+|||+|+|-++..+...... +..+.+.....+.+.. .+.+.|.|| ...+.
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~ 207 (320)
T KOG2486|consen 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWD 207 (320)
T ss_pred CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHh
Confidence 345677899999999999999999998876544332 2444444444444443 567999999 22334
Q ss_pred hhhHhhhc---CCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC----CCHHHHHH----
Q 026548 92 AVTSAYYR---GALGAVVVYDITKRQ--SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA----VSAEDAVE---- 158 (237)
Q Consensus 92 ~~~~~~~~---~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~----~~~~~~~~---- 158 (237)
.+...|+. +---+++++|++-+- .-.....|+.+ .++|+.+|+||+|...... .....+..
T Consensus 208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~ 281 (320)
T KOG2486|consen 208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQG 281 (320)
T ss_pred HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhh
Confidence 44444442 222356666766521 11222344443 5899999999999643211 11111111
Q ss_pred HH---HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 159 FA---EDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 159 ~~---~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
+. .....+.+.+|+.++.|++.++..+.+
T Consensus 282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccccceeccCCceeeecccccCceeeeeehhh
Confidence 11 112345667999999999987765544
No 341
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.67 E-value=7.9e-08 Score=72.15 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=38.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
..++|+++|.+|+|||||+|+|.+........ ..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEEcCC---CEEEEECcC
Confidence 35789999999999999999999876544332 222333333344433 256999998
No 342
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.61 E-value=1.7e-07 Score=78.95 Aligned_cols=83 Identities=17% Similarity=-0.015 Sum_probs=61.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC-cCCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcchh--
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEF-FFDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQERY-- 90 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~-- 90 (237)
++++++|.|++|||||+++|++... .....|..+.......+.+++. +..+.+.|.||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999999887 5444466555666666666542 135789999995432
Q ss_pred -----chhhHhhhcCCcEEEEEEECC
Q 026548 91 -----RAVTSAYYRGALGAVVVYDIT 111 (237)
Q Consensus 91 -----~~~~~~~~~~~d~~ilv~d~~ 111 (237)
....-..++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 122334578999999999974
No 343
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.61 E-value=1.1e-07 Score=77.72 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=65.9
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcchh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQERY 90 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 90 (237)
.+.+++.+||-|++|||||+|+|.+....+...|..+++.....+.+... +..+.++|++|.-.-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 36789999999999999999999999988777788888877777666432 346889999984332
Q ss_pred c----hhh---HhhhcCCcEEEEEEECC
Q 026548 91 R----AVT---SAYYRGALGAVVVYDIT 111 (237)
Q Consensus 91 ~----~~~---~~~~~~~d~~ilv~d~~ 111 (237)
. .+- -.-++.+|+++.|+++-
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 2 222 23458899999998854
No 344
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.61 E-value=2.3e-07 Score=78.88 Aligned_cols=95 Identities=22% Similarity=0.288 Sum_probs=69.3
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH----HHHH
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE----FAED 162 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~----~~~~ 162 (237)
.+.|..+...+.+.++++++|+|+.+.. ..|...+.... .+.|+++|+||+|+... ....+...+ +++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 5678888888889999999999997643 22334444433 26799999999998643 333444443 4556
Q ss_pred cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 026548 163 QGL---FFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 163 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
.++ .++.+||+++.|++++|..+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 38999999999999999888653
No 345
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.60 E-value=4.4e-07 Score=87.84 Aligned_cols=114 Identities=22% Similarity=0.264 Sum_probs=71.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCC----CC--CcceeEEEEEEEECCEEEEEEEEeCCC----cc----hhchhh
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDS----KS--TIGVEFQTRTVTINGKIIKAQIWDTAG----QE----RYRAVT 94 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~----~~~~~~ 94 (237)
.=.+|+|++|+||||+++.- +..++... .. .++.+. .....+.+. -.++||+| ++ .....|
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCC---EEEEcCCCccccCCCcccccHHHH
Confidence 45789999999999999875 44443321 01 111111 112223333 34999999 21 223345
Q ss_pred Hhhh---------cCCcEEEEEEECCChh---------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 95 SAYY---------RGALGAVVVYDITKRQ---------SFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 95 ~~~~---------~~~d~~ilv~d~~~~~---------s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
..++ +..+++|+++|+.+.- .-..++..+.++....+..+|+.|++||+|+..
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 5444 4579999999987621 113455666777777778899999999999864
No 346
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.60 E-value=1.2e-06 Score=72.99 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=91.9
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCC--------------cceeEEEEEEEECC-E--------------
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST--------------IGVEFQTRTVTING-K-------------- 75 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~-------------- 75 (237)
.+..+.|.+.|+.+.|||||+-.|..+..+...-.+ .+.+.+...+-+++ +
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 445788999999999999999888765544332111 12222222222221 1
Q ss_pred ------EEEEEEEeCCCcchhchhhHh-h-hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 76 ------IIKAQIWDTAGQERYRAVTSA-Y-YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 76 ------~~~~~l~Dt~G~~~~~~~~~~-~-~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
+-.+.|.||.|++.|-..... + -...|..++++.+++.-+-.. +.. ..+... -+.|++|++||+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEH-Lgi~~a--~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEH-LGIALA--MELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHh-hhhhhh--hcCCEEEEEEecccCc
Confidence 123679999999998665433 3 367899999999988543211 111 112222 4799999999999865
Q ss_pred CcCC--CHHHHHHH----------------------HHHcC---CeEEEEcCCCCCCHH
Q 026548 148 MRAV--SAEDAVEF----------------------AEDQG---LFFSEASALNGDNVD 179 (237)
Q Consensus 148 ~~~~--~~~~~~~~----------------------~~~~~---~~~~~~Sa~~~~gi~ 179 (237)
+..+ ..+++..+ +.+.+ +|+|.+|+.+|+|++
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld 328 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD 328 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH
Confidence 3211 11122111 11222 479999999999987
No 347
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.54 E-value=3.5e-07 Score=75.47 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=41.6
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 87 (237)
...++++|+|.||+|||||+|+|.+....... +..+.+.....+.++. .+.|+||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 45689999999999999999999988754332 2233334444455544 4679999995
No 348
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.53 E-value=3e-07 Score=70.03 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=40.9
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 87 (237)
...++++++|.+|+|||||+|+|.+..+.... ...+.+.....+.++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34579999999999999999999987764322 222334444445554 24679999994
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.51 E-value=3.6e-07 Score=74.99 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=41.0
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 87 (237)
..++++|+|.||+|||||+|+|.+....... ...+.+.....+.++. .+.|+||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 4689999999999999999999987754432 2223334444555543 3679999995
No 350
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.50 E-value=3.1e-07 Score=72.73 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=74.8
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCC-------hhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCC
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK-------RQSFDHVARWVEELRAHA----DSSIRIILIGNKSDL 145 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~-------~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~ 145 (237)
+.++.+|.+|+...+..|...+..+.++|+|+..+. ..+..+++..+..+...- ...+.+|+++||-|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 678999999999999999999999999999998775 112233333333322211 135779999999997
Q ss_pred CCC------------------------------cCCCHHHHHHHHH-------------HcCCeEEEEcCCCCCCHHHHH
Q 026548 146 VDM------------------------------RAVSAEDAVEFAE-------------DQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 146 ~~~------------------------------~~~~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
... +....-.++.|.+ ++-+.+.++.|.+..+|..+|
T Consensus 282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF 361 (379)
T KOG0099|consen 282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 361 (379)
T ss_pred HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence 431 0000111222222 122456778899999999999
Q ss_pred HHHHHHHH
Q 026548 183 FRLLQEIY 190 (237)
Q Consensus 183 ~~l~~~i~ 190 (237)
+...+.|.
T Consensus 362 nDcrdiIq 369 (379)
T KOG0099|consen 362 NDCRDIIQ 369 (379)
T ss_pred HHHHHHHH
Confidence 97666554
No 351
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.50 E-value=2.5e-07 Score=71.62 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=38.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcC-------CCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFF-------DSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
..+++++|.+|+|||||+|+|.+..... ......+++.....+.++. .+.|+||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3589999999999999999999754311 1122223444555555543 367999999
No 352
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2e-07 Score=78.24 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=91.4
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCC--------CcCCCC--------CCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNE--------FFFDSK--------STIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
+......+|.++..-.+||||.-.+++... ++.... ...+++.....++++.+.+++.++||||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence 444556789999999999999999886422 111111 1224556666777777778899999999
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
+..|+-...+.++-.|+++.|||++..-..+.+..|... .+.++|...++||+|...
T Consensus 112 hvdf~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLA 168 (753)
T ss_pred cceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhh
Confidence 999999999999999999999999876555555556543 235899999999999754
No 353
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.47 E-value=6.1e-07 Score=67.18 Aligned_cols=56 Identities=29% Similarity=0.290 Sum_probs=39.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
...+++++|.+|+|||||+|+|.+..... ..++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999765332 234444444333344443 477999998
No 354
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.43 E-value=1e-06 Score=66.13 Aligned_cols=88 Identities=18% Similarity=0.100 Sum_probs=56.4
Q ss_pred hhcCCcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC
Q 026548 97 YYRGALGAVVVYDITKRQS--FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN 174 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 174 (237)
.+..+|++++|+|+.++.. ...+..++ ... ..+.|+++|+||+|+..+... ......+...+....+.+||+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHH---Hhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4678999999999998632 22333332 222 245899999999998642211 1112222222223357799999
Q ss_pred CCCHHHHHHHHHHHH
Q 026548 175 GDNVDTAFFRLLQEI 189 (237)
Q Consensus 175 ~~gi~~~~~~l~~~i 189 (237)
+.|++++++.+.+.+
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999988886653
No 355
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=3.1e-06 Score=73.79 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=73.4
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEE-ECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVT-INGKIIKAQIWDTAGQERYRAVTSAYY 98 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 98 (237)
+.+...++.+=++|+|+||+||||||+.|+.+.......... ..++ +.|..-++.+..+| ..... .....
T Consensus 61 rtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~------GPiTvvsgK~RRiTflEcp--~Dl~~-miDva 131 (1077)
T COG5192 61 RTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR------GPITVVSGKTRRITFLECP--SDLHQ-MIDVA 131 (1077)
T ss_pred CCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC------CceEEeecceeEEEEEeCh--HHHHH-HHhHH
Confidence 455666777889999999999999999988654221111111 1111 34555678899998 23333 23456
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 026548 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVD 147 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 147 (237)
+-+|++++++|.+-....+.+ .+++.+.. ++.| ++-|+|..|+..
T Consensus 132 KIaDLVlLlIdgnfGfEMETm-EFLnil~~---HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 132 KIADLVLLLIDGNFGFEMETM-EFLNILIS---HGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred HhhheeEEEeccccCceehHH-HHHHHHhh---cCCCceEEEEeeccccc
Confidence 789999999998754333222 33444444 4666 557889999865
No 356
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.41 E-value=5.8e-07 Score=75.23 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=43.5
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 87 (237)
..++++|+|-||+|||||||+|.+....... +..+.+.....+.+... +.|+||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCc
Confidence 3578999999999999999999999874433 33355566666666553 679999993
No 357
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.5e-06 Score=72.11 Aligned_cols=149 Identities=21% Similarity=0.280 Sum_probs=90.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-----------------------CCcceeEEEEEEEECC----------
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-----------------------STIGVEFQTRTVTING---------- 74 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~---------- 74 (237)
.++++|+|.-.+|||||+-.|..+..+...- ...+++-.-+.+++..
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 5899999999999999998776554332110 1111111111111111
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-- 150 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-- 150 (237)
...-+.++|.+|+.+|.......+. -.|..++|++++..-++..- ..+..+.. .++|++|+++|+|+.....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIAA---LNIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHHH---hCCCeEEEEEeeccccchhHH
Confidence 1123779999999999876655443 34778899998875444322 22222222 4799999999999865311
Q ss_pred ----------------------CCHHHHHHHHHHc----CCeEEEEcCCCCCCHHH
Q 026548 151 ----------------------VSAEDAVEFAEDQ----GLFFSEASALNGDNVDT 180 (237)
Q Consensus 151 ----------------------~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 180 (237)
.+.+++...+.+. =.|+|.+|+.+|+|++-
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l 378 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL 378 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence 1223333333322 24789999999999873
No 358
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.41 E-value=1.5e-06 Score=64.97 Aligned_cols=85 Identities=16% Similarity=0.091 Sum_probs=55.1
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 181 (237)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+...... .+...++....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988755432 12221 1111247899999999998542111 11112233334566899999999999999
Q ss_pred HHHHHHHHH
Q 026548 182 FFRLLQEIY 190 (237)
Q Consensus 182 ~~~l~~~i~ 190 (237)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 988877643
No 359
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.41 E-value=3.6e-05 Score=56.93 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=77.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCC-Ccc--------------hh-
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA-GQE--------------RY- 90 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~--------------~~- 90 (237)
..+||.+-|+||+||||++.++.+.-....+. . --+...++.-+|..+-|.+.|+. |.. +|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k-v--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYK-V--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCce-e--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 35799999999999999999876432211111 1 12334445556777777777766 311 11
Q ss_pred ----------chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH
Q 026548 91 ----------RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFA 160 (237)
Q Consensus 91 ----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~ 160 (237)
.......+..+| ++++|--.+..+.. ..+...+......+.|++.++.+.+.. + ..+++
T Consensus 81 V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpMElks-~~f~~~ve~vl~~~kpliatlHrrsr~------P-~v~~i- 149 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEAD--VIIIDEIGPMELKS-KKFREAVEEVLKSGKPLIATLHRRSRH------P-LVQRI- 149 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCC--EEEEecccchhhcc-HHHHHHHHHHhcCCCcEEEEEecccCC------h-HHHHh-
Confidence 111223345566 55567444433221 233344444444678888888766531 1 23333
Q ss_pred HHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 161 EDQGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 161 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
+..+..++++ +..|=+.+++.+...+
T Consensus 150 k~~~~v~v~l---t~~NR~~i~~~Il~~L 175 (179)
T COG1618 150 KKLGGVYVFL---TPENRNRILNEILSVL 175 (179)
T ss_pred hhcCCEEEEE---ccchhhHHHHHHHHHh
Confidence 3344333334 3334446666665544
No 360
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.2e-06 Score=78.45 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=82.2
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC--------------CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF--------------DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 88 (237)
...+...+|+++.+..=|||||...|+..+-.. ....+.+++.....+..-..++.+.|+|+|||-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 345567799999999999999999987543211 112333444444445444455789999999999
Q ss_pred hhchhhHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548 89 RYRAVTSAYYRGALGAVVVYDITKR---QSFDHVARWVEELRAHADSSIRIILIGNKSD 144 (237)
Q Consensus 89 ~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 144 (237)
.|.+......+-+|++++++|+... ++..-++. ... .+...++|+||+|
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq----~~~---~~~~~~lvinkid 135 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQ----AWI---EGLKPILVINKID 135 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHH----HHH---ccCceEEEEehhh
Confidence 9999999999999999999999873 33333322 111 2456789999999
No 361
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.40 E-value=4e-06 Score=72.23 Aligned_cols=85 Identities=14% Similarity=-0.017 Sum_probs=49.9
Q ss_pred EEEEEEeCCCcchhchhh----Hhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRAVT----SAY--YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
+.+.|+||+|........ ..+ ....|.+++|+|+.-.+...+.. ..|... -.+.-+|+||.|...
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~---~~~~g~IlTKlD~~a--- 253 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS---VDVGSVIITKLDGHA--- 253 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc---cCCcEEEEECccCCC---
Confidence 578899999955433211 111 23467899999987643332222 223221 235678999999743
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 026548 151 VSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~S 171 (237)
..-.+.......+.|+.+++
T Consensus 254 -rgG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 254 -KGGGALSAVAATKSPIIFIG 273 (429)
T ss_pred -CccHHhhhHHHHCCCeEEEc
Confidence 22245566667777766655
No 362
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.38 E-value=2.7e-07 Score=68.91 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=33.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCC------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFD------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 91 (237)
.++++|++|+|||||+|.|........ ......++.....+.+++.. .|+||||...+.
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~ 101 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG 101 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence 689999999999999999998743221 11111222233445554433 499999965543
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.37 E-value=1.3e-06 Score=65.45 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=38.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
....+++++|.+|+|||||+|.|.+..... ...+..+... ..+..+. .+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~~---~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLDN---KIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEecC---CEEEEECCC
Confidence 346889999999999999999999876432 2223333333 2333332 477999998
No 364
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.36 E-value=1.1e-05 Score=70.24 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=75.7
Q ss_pred EEEEEeCCCc-------------chhchhhHhhhcCCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 026548 78 KAQIWDTAGQ-------------ERYRAVTSAYYRGALGAVVVYDITKRQSF-DHVARWVEELRAHADSSIRIILIGNKS 143 (237)
Q Consensus 78 ~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~vvv~nK~ 143 (237)
+..|.|.||. +..-.+...+..+.+++|+|+--..-++- ..+..... .....+...|+|++|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVs---q~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVS---QMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHH---hcCCCCCeeEEEEeec
Confidence 4679999992 22334566788999999999854332221 12222222 2222577899999999
Q ss_pred CCCCCcCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHHHHHHHHHHhhhccccccCCCccCCCCCCCCCcccc
Q 026548 144 DLVDMRAVSAEDAVEFAEDQG-----LFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDV 218 (237)
Q Consensus 144 D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (237)
|+.+..-.++..++++....= ..||.+-.=.|.. .+..++ ++.+.+.+=........+ .--|++...+.+.+
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGns-sdSIda-IR~YEE~FF~nSkLl~~~-vlkphQvTtRNlSL 566 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNS-SESIEA-IREYEEEFFQNSKLLKTS-MLKAHQVTTRNLSL 566 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCc-chhHHH-HHHHHHHHhhhhHHHHhh-ccchhhhcccchhH
Confidence 999887788888888876422 2255553222222 222222 333333333333222222 23356666666655
Q ss_pred c
Q 026548 219 I 219 (237)
Q Consensus 219 ~ 219 (237)
+
T Consensus 567 A 567 (980)
T KOG0447|consen 567 A 567 (980)
T ss_pred H
Confidence 4
No 365
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.36 E-value=1.1e-06 Score=73.16 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=81.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcC----------------C--CCCCcceeE--------------------EEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFF----------------D--SKSTIGVEF--------------------QTRT 69 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~----------------~--~~~~~~~~~--------------------~~~~ 69 (237)
.++|+|+|...+|||||+-.|.....+. . ..+.++.+. ....
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 5899999999999999996554433211 1 111111111 0001
Q ss_pred EEECCEEEEEEEEeCCCcchhchhhHhh--hcCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548 70 VTINGKIIKAQIWDTAGQERYRAVTSAY--YRGALGAVVVYDITKR---QSFDHVARWVEELRAHADSSIRIILIGNKSD 144 (237)
Q Consensus 70 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~--~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 144 (237)
+. .+....+.|+|.+|++.|-...-.- -+..|...+++-++.. .+-+.+ ..... ..+|++||++|+|
T Consensus 213 Ic-e~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHL----gLALa---L~VPVfvVVTKID 284 (641)
T KOG0463|consen 213 IC-EDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHL----GLALA---LHVPVFVVVTKID 284 (641)
T ss_pred ec-cccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhh----hhhhh---hcCcEEEEEEeec
Confidence 11 1112347899999999997654332 2445777777776542 221211 11111 4799999999999
Q ss_pred CCCCcCC--CHHHHHHH--------------------------HHHcCCeEEEEcCCCCCCHH
Q 026548 145 LVDMRAV--SAEDAVEF--------------------------AEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 145 ~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~~~Sa~~~~gi~ 179 (237)
+...... +......+ ..+.-||+|.+|..+|.+++
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~ 347 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP 347 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH
Confidence 8542111 01111111 11223578999999999987
No 366
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.35 E-value=9.4e-06 Score=64.53 Aligned_cols=87 Identities=18% Similarity=0.049 Sum_probs=52.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC--CCcCCCC-CCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhc------hhhH
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFFFDSK-STIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYR------AVTS 95 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~------~~~~ 95 (237)
.+..-|.|+|++++|||+|+|.|.+. .+..... ...+........... +....+.++||+|..... ....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567999999999999999999998 5543322 111111111222221 223578899999954322 1222
Q ss_pred hhhc--CCcEEEEEEECCC
Q 026548 96 AYYR--GALGAVVVYDITK 112 (237)
Q Consensus 96 ~~~~--~~d~~ilv~d~~~ 112 (237)
..+. -++.+||..+...
T Consensus 85 ~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 85 FALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHhCEEEEeccCcc
Confidence 2333 3788888777665
No 367
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.34 E-value=2.8e-06 Score=63.85 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=38.2
Q ss_pred EEEEEEeCCCcchhchhhHh--------hhcCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548 77 IKAQIWDTAGQERYRAVTSA--------YYRGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNKSDL 145 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 145 (237)
....++|++|.......... ..-..|.+++++|+.+-.. .++...+..++.... +|++||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence 46789999996544433322 1235788999999765222 222333444444432 789999995
No 368
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.32 E-value=2e-05 Score=66.89 Aligned_cols=163 Identities=20% Similarity=0.229 Sum_probs=88.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCc----------------CCCCCCc-----ceeEE---EEEEEE-CCEEEEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFF----------------FDSKSTI-----GVEFQ---TRTVTI-NGKIIKAQI 81 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~-----~~~~~---~~~~~~-~~~~~~~~l 81 (237)
..+=|.|+||..+|||||+++|....+. +++.+.. ...|. ...+.+ ++..+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 3567999999999999999998653221 1111111 11111 122333 466788999
Q ss_pred EeCCC--------cch--hch----hh---------------Hhhh--cCCcEEEEEEECC--C--hhhH-HHHHHHHHH
Q 026548 82 WDTAG--------QER--YRA----VT---------------SAYY--RGALGAVVVYDIT--K--RQSF-DHVARWVEE 125 (237)
Q Consensus 82 ~Dt~G--------~~~--~~~----~~---------------~~~~--~~~d~~ilv~d~~--~--~~s~-~~~~~~~~~ 125 (237)
+|+.| +.. ... .| ...+ +..=++++.-|.+ + ++.+ +.-.+.++.
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 99998 000 000 01 0011 1222344544533 2 3333 233455555
Q ss_pred HHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 026548 126 LRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196 (237)
Q Consensus 126 ~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~ 196 (237)
+.. -+.|++|++|-.+-.. ....+...++..+++++++.+++..- .-+++. .|.+.++-.++-+
T Consensus 176 Lk~---igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l-~~~DI~-~Il~~vLyEFPV~ 239 (492)
T PF09547_consen 176 LKE---IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQL-REEDIT-RILEEVLYEFPVS 239 (492)
T ss_pred HHH---hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHc-CHHHHH-HHHHHHHhcCCce
Confidence 655 4799999999987433 33455666777788888888765322 223333 4444444445443
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.31 E-value=5e-06 Score=69.42 Aligned_cols=95 Identities=18% Similarity=0.139 Sum_probs=58.6
Q ss_pred EEEEEEeCCCcchhchh----hHhh--------hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548 77 IKAQIWDTAGQERYRAV----TSAY--------YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~----~~~~--------~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 144 (237)
+.+.|+||||....... ...+ -...+..++|+|++... +.+... ..+... --+.-+|+||.|
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIlTKlD 270 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIILTKLD 270 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEEECCC
Confidence 56889999995432221 1111 12467789999998532 233221 222221 124468999999
Q ss_pred CCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
... ....+..++...++|+..++ +|++++++-.
T Consensus 271 ~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 271 GTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 543 23356677788899998888 8888876543
No 370
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.30 E-value=6.4e-06 Score=65.35 Aligned_cols=87 Identities=23% Similarity=0.175 Sum_probs=56.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhHhhhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTSAYYRGA 101 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 101 (237)
.+|.++|-|.+||||++..|.+-..........+.......+.+.+ -++++.|.||.-+-. .......+-+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999887654333222322333333333444 468899999933221 1233456788
Q ss_pred cEEEEEEECCChhhHH
Q 026548 102 LGAVVVYDITKRQSFD 117 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~ 117 (237)
..+++|.|+..+-+-.
T Consensus 138 nli~~vld~~kp~~hk 153 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHK 153 (358)
T ss_pred cEEEEEeeccCcccHH
Confidence 9999999977654433
No 371
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.30 E-value=2.1e-06 Score=63.24 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=53.1
Q ss_pred HhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC
Q 026548 95 SAYYRGALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA 172 (237)
Q Consensus 95 ~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 172 (237)
...+..+|++++|+|+.++.+.. .+..|+... . .+.|+++|+||+|+..+.. .....+.....+..++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 44578999999999998876543 344444332 1 4689999999999864322 22344555566778999999
Q ss_pred CCCCC
Q 026548 173 LNGDN 177 (237)
Q Consensus 173 ~~~~g 177 (237)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 88764
No 372
>PRK14974 cell division protein FtsY; Provisional
Probab=98.29 E-value=4.1e-06 Score=70.23 Aligned_cols=95 Identities=18% Similarity=0.014 Sum_probs=58.1
Q ss_pred EEEEEEeCCCcchhch-h---hHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRA-V---TSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~-~---~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
+.+.|+||+|...... + ...+. -..|.+++|+|+......... ...+.... -.--+|+||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~---a~~f~~~~---~~~giIlTKlD~~~--- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ---AREFNEAV---GIDGVILTKVDADA--- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH---HHHHHhcC---CCCEEEEeeecCCC---
Confidence 4578999999654222 1 12222 256889999998764322111 12222211 23468899999743
Q ss_pred CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 151 VSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
..-.+..++...+.|+..++ +|.+++++..
T Consensus 294 -~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 294 -KGGAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred -CccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 22346666777899988887 7999977654
No 373
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=4e-06 Score=73.55 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=80.5
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-----CCC-----------CCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-----DSK-----------STIGVEFQTRTVTINGKIIKAQIWDTAGQ 87 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 87 (237)
+.....+|.+.-.-.+||||+-++++...-.. ... ...+++....-..+....+.+.|+||||+
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence 33456789999999999999999875432110 000 00122222222222333578999999999
Q ss_pred chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
-.|.-...+.++-.|++++++++...-.-+....|.. +.+ .++|.+.++||.|..+
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~r---y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKR---YNVPRICFINKMDRMG 170 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHh---cCCCeEEEEehhhhcC
Confidence 9999999999999999999999876433333334443 333 3799999999999644
No 374
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.27 E-value=2.8e-06 Score=64.62 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=60.6
Q ss_pred chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEE
Q 026548 91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEA 170 (237)
Q Consensus 91 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
.......+.++|.+++|+|+.++...... .+...+ .+.|+++|+||+|+..... .....++....+..++.+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34456678999999999999875432221 111211 2578999999999864211 112223333445568999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 026548 171 SALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 171 Sa~~~~gi~~~~~~l~~~i 189 (237)
|++++.|++++...+...+
T Consensus 82 Sa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ECCCcccHHHHHHHHHHHH
Confidence 9999999999888887765
No 375
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.27 E-value=1.3e-05 Score=65.51 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=59.2
Q ss_pred EEEEEEeCCCcchhchhhH-------hhh-----cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548 77 IKAQIWDTAGQERYRAVTS-------AYY-----RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~-------~~~-----~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 144 (237)
+.+.|+||||......... ... ...|.+++|+|++... +.+.. ...+.... -+.-+|+||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhhC---CCCEEEEEccC
Confidence 5678999999654332211 111 2478999999997532 22222 23333221 23568999999
Q ss_pred CCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
... ....+..+....+.|+..++ +|.+++++-.
T Consensus 229 e~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 229 GTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 744 23356677778889988887 8888876543
No 376
>PRK12288 GTPase RsgA; Reviewed
Probab=98.24 E-value=2.1e-06 Score=72.47 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=37.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCcCCCC-C-----CcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548 31 VVVIGDSAVGKSQILSRFTKNEFFFDSK-S-----TIGVEFQTRTVTINGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 91 (237)
++|+|.+|+|||||+|+|.+........ + ...++.....+.+++.. .|+||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 7899999999999999999765432211 1 11122333344554332 399999976655
No 377
>PRK01889 GTPase RsgA; Reviewed
Probab=98.21 E-value=6.1e-06 Score=70.07 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=58.8
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-DQGLFFSEASALNGD 176 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 176 (237)
..++|.+++|+++........+.+++..+.. .+++.+||+||+|+.... .+....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 5789999999999755555556665555544 468889999999997531 111222222 356789999999999
Q ss_pred CHHHHHHHHH
Q 026548 177 NVDTAFFRLL 186 (237)
Q Consensus 177 gi~~~~~~l~ 186 (237)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9998887764
No 378
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.20 E-value=7e-06 Score=67.37 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=61.7
Q ss_pred hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC
Q 026548 93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA 172 (237)
Q Consensus 93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 172 (237)
.....+..+|++|+|+|+..+.+.... .....+ .+.|+++|+||+|+..... .+...+.....+..++.+|+
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa 85 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINA 85 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence 345678899999999999876543221 111111 2579999999999854211 11122223335667899999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q 026548 173 LNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 173 ~~~~gi~~~~~~l~~~i~~~ 192 (237)
+++.|++++.+.+.+.+.+.
T Consensus 86 ~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCcccHHHHHHHHHHHHHHh
Confidence 99999999988887776544
No 379
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.4e-05 Score=61.82 Aligned_cols=163 Identities=23% Similarity=0.276 Sum_probs=101.7
Q ss_pred eeeEEEEcCCCC--cHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEE--EEEEeCCCcchhchhhHhhhcCCcE
Q 026548 28 VFKVVVIGDSAV--GKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIK--AQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 28 ~~~i~v~G~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
...++|+|..|+ ||.+|+.+|....+.....+...+.+.... ++.+.+. +.+.-.+--+.+.-..........+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceee
Confidence 346889999998 999999999888776655554444444433 3333322 1121112112222222233455678
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---------------------------c-------
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM---------------------------R------- 149 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~---------------------------~------- 149 (237)
++++||.+....+..+..|+....... . -.++.++||.|.... .
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdins-f-dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg 159 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDINS-F-DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG 159 (418)
T ss_pred EEEEEeccchhhhHHHHhhcccccccc-c-hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence 999999999999999999987532221 1 124567899885320 0
Q ss_pred -------C---CCHHHHHHHHHHcCCeEEEEcCCC------------CCCHHHHHHHHHHHHHHhhh
Q 026548 150 -------A---VSAEDAVEFAEDQGLFFSEASALN------------GDNVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 150 -------~---~~~~~~~~~~~~~~~~~~~~Sa~~------------~~gi~~~~~~l~~~i~~~~~ 194 (237)
. .....+++|+.++++.+++.++.+ ..|+..+|.+|-.+++.-+.
T Consensus 160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmi 226 (418)
T KOG4273|consen 160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMI 226 (418)
T ss_pred ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccce
Confidence 0 123346778888999999988743 24788888888777655443
No 380
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.1e-05 Score=66.28 Aligned_cols=138 Identities=21% Similarity=0.193 Sum_probs=87.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC----------CCc------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN----------EFF------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~----------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 89 (237)
...++|.-+|+..-|||||-.++..- +++ ......+++.....++...... +-=.|+||+..
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~Rh--YaH~DCPGHAD 129 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRH--YAHTDCPGHAD 129 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccc--cccCCCCchHH
Confidence 34689999999999999999877531 111 1122333333333333333322 34689999999
Q ss_pred hchhhHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCcC---CCHHHHHHHHHH
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKR---QSFDHVARWVEELRAHADSSI-RIILIGNKSDLVDMRA---VSAEDAVEFAED 162 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~-p~vvv~nK~D~~~~~~---~~~~~~~~~~~~ 162 (237)
|-.....-..++|+.|+|+.++|. ++-+.+ . +.+.. ++ .++|++||.|+..+.+ .-.-+++++...
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHl----L-LArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHL----L-LARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHH----H-HHHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 988777777899999999999994 333222 1 22222 33 4778899999874322 223356677777
Q ss_pred cC-----CeEEEEcC
Q 026548 163 QG-----LFFSEASA 172 (237)
Q Consensus 163 ~~-----~~~~~~Sa 172 (237)
++ +|++.=||
T Consensus 203 ~gf~Gd~~PvI~GSA 217 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSA 217 (449)
T ss_pred cCCCCCCCCeeecch
Confidence 66 46776554
No 381
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.17 E-value=1.3e-06 Score=68.18 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=77.3
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh----------hHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCC
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ----------SFDHVARWVEELRAHAD-SSIRIILIGNKSDL 145 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~ 145 (237)
+.+.+.|.+|+...+..|...+.++-.+++++.++..+ -.+.-...+.-+..+-= .+-++|+++||.|+
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl 278 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 278 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence 45778999999999999999998888877777655421 11112222222222211 46789999999998
Q ss_pred CCCc----------------CCCHHHHHHHHHHc----C------CeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548 146 VDMR----------------AVSAEDAVEFAEDQ----G------LFFSEASALNGDNVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 146 ~~~~----------------~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~ 194 (237)
.++. ....+.+++|..+. + +.-.++.|.+..+|.-+|.+..+.++...-
T Consensus 279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 6521 22344555665432 1 123457788999999999998888877654
No 382
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=8.8e-06 Score=77.51 Aligned_cols=115 Identities=22% Similarity=0.260 Sum_probs=66.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC---CCc-ceeEEEEEEEECCEEEEEEEEeCCC----cc----hhchhhHh
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK---STI-GVEFQTRTVTINGKIIKAQIWDTAG----QE----RYRAVTSA 96 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~Dt~G----~~----~~~~~~~~ 96 (237)
+=-+|+|++|+||||++.. .+..|+.... ... +........-+.+. -.++||+| ++ .....|..
T Consensus 126 PWy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred CceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHH
Confidence 3468999999999999854 2333322110 000 00001111222333 44999999 21 22334544
Q ss_pred hh---------cCCcEEEEEEECCChh---------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 97 YY---------RGALGAVVVYDITKRQ---------SFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 97 ~~---------~~~d~~ilv~d~~~~~---------s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
++ +..+++|+.+|+.+.- ....++.-+.++........|++|++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 42 5779999999987621 112234445556666567899999999999865
No 383
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=1e-06 Score=71.31 Aligned_cols=105 Identities=22% Similarity=0.211 Sum_probs=72.0
Q ss_pred EEEEeCCCcchhchhhHhhhcCCcEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CC
Q 026548 79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VS 152 (237)
Q Consensus 79 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~ 152 (237)
+.+.|+||++..-...-.-..-+|++++++..+. +++.+.+.. .+ +.. -..++++-||+|+..+.+ ..
T Consensus 127 VSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa-ve-iM~----LkhiiilQNKiDli~e~~A~eq 200 (466)
T KOG0466|consen 127 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA-VE-IMK----LKHIIILQNKIDLIKESQALEQ 200 (466)
T ss_pred EEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH-HH-Hhh----hceEEEEechhhhhhHHHHHHH
Confidence 6699999998765544444556789999988876 444444422 11 111 245889999999975432 23
Q ss_pred HHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 153 AEDAVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 153 ~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
.++++.|... .+.|++.+||.-..+++-+.++|++++
T Consensus 201 ~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 201 HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred HHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 4456666664 357899999999999998777777665
No 384
>PRK12289 GTPase RsgA; Reviewed
Probab=98.16 E-value=3.6e-06 Score=71.10 Aligned_cols=57 Identities=25% Similarity=0.221 Sum_probs=36.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCcCCCC-CC-----cceeEEEEEEEECCEEEEEEEEeCCCcchh
Q 026548 31 VVVIGDSAVGKSQILSRFTKNEFFFDSK-ST-----IGVEFQTRTVTINGKIIKAQIWDTAGQERY 90 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 90 (237)
++|+|++|+|||||||+|.+........ +. ..++.....+.+++.. .|+||||...+
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 7999999999999999999765432211 11 1122333444454322 49999997543
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=5.8e-05 Score=66.52 Aligned_cols=137 Identities=15% Similarity=0.234 Sum_probs=76.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC--------CCcCCCCCC---------------cceeEEEEEEEE---------CCE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN--------EFFFDSKST---------------IGVEFQTRTVTI---------NGK 75 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~--------~~~~~~~~~---------------~~~~~~~~~~~~---------~~~ 75 (237)
.-.|+|+|+.|+||||++..|... ++......+ .+..+. ...- .-.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLERLR 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHHhc
Confidence 457899999999999999887642 110000000 001111 0000 012
Q ss_pred EEEEEEEeCCCcchhchhhHh---hhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 76 IIKAQIWDTAGQERYRAVTSA---YYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 76 ~~~~~l~Dt~G~~~~~~~~~~---~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
.+.+.|+||+|.......... .+. .....++|++.+.. ...+...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~--- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG--- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence 356889999996543322111 011 12345777777642 3333333333332 235679999999633
Q ss_pred CCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 151 VSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
....+..+....+.++..++ +|..|
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 34678888888999987776 67766
No 386
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.15 E-value=5.6e-06 Score=64.36 Aligned_cols=92 Identities=20% Similarity=0.118 Sum_probs=54.8
Q ss_pred EEEEEEeCCCcchhchh----hHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
+.+.|+||+|....... +..++ ...+-+++|++++.... .+..+.. +.... + +-=+++||.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~~-~~~~~--~-~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQALA-FYEAF--G-IDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHHH-HHHHS--S-TCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHHH-Hhhcc--c-CceEEEEeecCCC---
Confidence 34789999995543321 11222 25677899999886532 2222222 22221 1 2357799999643
Q ss_pred CCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 151 VSAEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
..-.+..++...+.|+-.++ +|.+|++
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred -CcccceeHHHHhCCCeEEEE--CCCChhc
Confidence 34567888889999988877 6666633
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.14 E-value=3.7e-06 Score=71.66 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=37.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC----cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEF----FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 88 (237)
.+++|+|.+|+|||||+|+|..... ........+++.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 4799999999999999999986431 1111122233344445555443 3599999964
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=98.11 E-value=2.4e-05 Score=66.79 Aligned_cols=93 Identities=22% Similarity=0.293 Sum_probs=61.2
Q ss_pred chhchhhHhhhcCCc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH----HHHH
Q 026548 88 ERYRAVTSAYYRGAL-GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE----FAED 162 (237)
Q Consensus 88 ~~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~----~~~~ 162 (237)
+.|...... +...| .+++|+|+.+.. ..|...+.... .+.|+++|+||+|+... ....+...+ +++.
T Consensus 57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 57 DDFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHh
Confidence 345444433 34455 899999997733 22334444433 26799999999999642 333333333 3555
Q ss_pred cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 026548 163 QGL---FFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 163 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
.++ .++.+||+++.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 665 58999999999999999888654
No 389
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.11 E-value=6.6e-06 Score=70.04 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=64.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCc----CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhH--------h
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFF----FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTS--------A 96 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------~ 96 (237)
.+++++|.+|+|||||+|+|.+.... .......+++.....+.+++ .+.++||||......+.. .
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~~~~~~~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINSHQMAHYLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCChhHhhhhcCHHHHhh
Confidence 48999999999999999999975421 11112223334444555533 245999999543322111 1
Q ss_pred hh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH
Q 026548 97 YY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED 162 (237)
Q Consensus 97 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~ 162 (237)
.. +......+.++....-.+..+. ++..+. .....+.+.+++.+..+. -..+.+.++..+
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~~~ggl~-~~d~~~---~~~~~~~~~~~~~~~~h~--t~~~~a~~~~~~ 293 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTLFLGGLA-RFDYLK---GEKTSFTFYVSNELNIHR--TKLENADELYNK 293 (360)
T ss_pred cCCCCccCceEEEeCCCCEEEEceEE-EEEEec---CCceEEEEEccCCceeEe--echhhhHHHHHh
Confidence 11 2345566666655422222110 111111 124556677777765542 223444444443
No 390
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=3.9e-05 Score=66.16 Aligned_cols=143 Identities=14% Similarity=0.122 Sum_probs=78.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCC---C-----CCC---------------cceeEEEEEEE-------ECCEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFD---S-----KST---------------IGVEFQTRTVT-------INGKII 77 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~---~-----~~~---------------~~~~~~~~~~~-------~~~~~~ 77 (237)
.-.|+++|+.|+||||++..|.+...... . ..+ .+..+....-. ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45899999999999999997765311000 0 000 00000000000 000113
Q ss_pred EEEEEeCCCcchhch----hhHhhhc--CCcEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 78 KAQIWDTAGQERYRA----VTSAYYR--GALGAVVVYDITK-RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~----~~~~~~~--~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
.+.++||+|...... ....+.. ..+-.++|+|++. .... ..++..+.. --+-=+|+||.|-..
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~---~~~~~~f~~----~~~~~~I~TKlDEt~--- 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL---DEVISAYQG----HGIHGCIITKVDEAA--- 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH---HHHHHHhcC----CCCCEEEEEeeeCCC---
Confidence 467999999554322 2222221 2345788889874 3333 333333322 122358899999643
Q ss_pred CCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHH
Q 026548 151 VSAEDAVEFAEDQGLFFSEASALNGDNV-DTAFF 183 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~~ 183 (237)
..-.+..++...+.++..++ +|..| +++..
T Consensus 341 -~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~ 371 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYVT--NGQKVPEDLHE 371 (420)
T ss_pred -CccHHHHHHHHhCCCEEEEE--CCCCchhhhhh
Confidence 34567788888999987776 77777 44443
No 391
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=3e-05 Score=65.84 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=77.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcC-C--CCCCcceeE------------------EEEEEEE---------CCEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFF-D--SKSTIGVEF------------------QTRTVTI---------NGKII 77 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~-~--~~~~~~~~~------------------~~~~~~~---------~~~~~ 77 (237)
.-.++|+|++|+||||++..|....... . ....++.+. ....+.- .-...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3478899999999999999886532110 0 000000000 0000000 00124
Q ss_pred EEEEEeCCCcchhchhhHh---hhc---CCcEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCCC
Q 026548 78 KAQIWDTAGQERYRAVTSA---YYR---GALGAVVVYDITK-RQSFDHVARWVEELRAHADSS--IRIILIGNKSDLVDM 148 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~~~~~---~~~---~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~--~p~vvv~nK~D~~~~ 148 (237)
.+.|+||+|.......... .+. ...-.++|++++. .+....+..-+.......... -+-=+|+||.|-..
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~- 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS- 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence 6789999996644332211 122 2344688889876 334343322222221110000 12358889999643
Q ss_pred cCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
..-.+..++...+.|+..++ +|..|.+
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVS--TGQKVPE 322 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEe--cCCCCCc
Confidence 34567788888898877776 5555544
No 392
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.07 E-value=8.2e-06 Score=65.76 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=36.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCC------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDS------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 91 (237)
.++++|.+|+|||||+|+|.+....... .....++.....+.+.+. .|+||||...+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~ 185 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG 185 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence 6899999999999999999976433211 111112223333444332 499999965543
No 393
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.07 E-value=2.2e-05 Score=64.87 Aligned_cols=92 Identities=20% Similarity=0.173 Sum_probs=61.9
Q ss_pred hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC
Q 026548 93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA 172 (237)
Q Consensus 93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 172 (237)
.....+..+|++|+|+|+..+.+... .++..+. .+.|+++|+||+|+..... .+...++....+.+++.+|+
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa 88 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINA 88 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence 34566889999999999987654322 1112211 2589999999999854211 11222223344677899999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q 026548 173 LNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 173 ~~~~gi~~~~~~l~~~i~~~ 192 (237)
+++.|++++++.+.+.+.+.
T Consensus 89 ~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred CCcccHHHHHHHHHHHHHHH
Confidence 99999999988887766543
No 394
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.06 E-value=4.9e-06 Score=71.74 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=42.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 88 (237)
.+.|++||.||+||||+||+|.+++....+ .|.|.+....++.+.. .+.|.|+||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 699999999999999999999999865544 3444444444554543 36699999943
No 395
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.06 E-value=7.4e-06 Score=66.87 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=39.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCc------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFF------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 91 (237)
-.+++|.+|+|||||+|+|...... .......-++.....+.+++..+ |+||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 5789999999999999999864321 11212223344556666754334 89999976654
No 396
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=6.5e-05 Score=63.95 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=54.9
Q ss_pred EEEEEEeCCCcchhchh----hHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
+.+.|+||+|....... ...++ ...+.+++|+|++-.. ..+...+..+... ..-=+|+||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence 46789999996443221 22233 2346788899875322 2333333333321 22358899999643
Q ss_pred CCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 151 VSAEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
..-.+..++...++|+..++ +|.+|.+
T Consensus 392 -k~G~iLni~~~~~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT--DGQDVKK 418 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 34467788888899877775 5555544
No 397
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.94 E-value=2.3e-05 Score=64.68 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=38.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC------CCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK------STIGVEFQTRTVTINGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 91 (237)
-.++++|++|+|||||+|.|.+........ ....++.....+...+. ..++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 469999999999999999999865432211 11112233334444432 2499999987654
No 398
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=7.2e-05 Score=60.08 Aligned_cols=117 Identities=21% Similarity=0.385 Sum_probs=71.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC----CCcceeEEEEEEEECCEEEEEEEEeCCCc-------chhchhh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK----STIGVEFQTRTVTINGKIIKAQIWDTAGQ-------ERYRAVT 94 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~~~~~ 94 (237)
...++|+-+|..|.|||||+..|++-++..... +.+........+.-.+..+++.+.||.|. +.|....
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 446899999999999999999999988754432 33333333333333556678999999981 1221111
Q ss_pred H-------hh-------------h--cCCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 95 S-------AY-------------Y--RGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 95 ~-------~~-------------~--~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
. .| + .+.++++|.++.+. .++..+.- .+..+. .++.+|-++-|.|-..
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence 1 11 1 46788899888774 33333321 112222 3456677778888654
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=97.92 E-value=2e-05 Score=65.40 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=35.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCC-C-----CcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSK-S-----TIGVEFQTRTVTINGKIIKAQIWDTAGQER 89 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 89 (237)
.++++|++|+|||||+|+|.+........ + ...++.....+.+++. ..++||||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 58999999999999999998765432211 1 0112223333444432 25899999654
No 400
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.91 E-value=8.9e-05 Score=56.39 Aligned_cols=83 Identities=16% Similarity=0.027 Sum_probs=47.5
Q ss_pred EEEEEEeCCCcchhch----hhHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRA----VTSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
..+.++|++|...... ....+. ...|.+++|+|...... ...+...+.... + ..-+|.||.|...
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~--- 153 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDA--- 153 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCC---
Confidence 4577899999643221 122222 24899999999865332 223333333322 2 3567789999754
Q ss_pred CCHHHHHHHHHHcCCeEEE
Q 026548 151 VSAEDAVEFAEDQGLFFSE 169 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ 169 (237)
....+.+.+...++|+..
T Consensus 154 -~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 154 -RGGAALSIRAVTGKPIKF 171 (173)
T ss_pred -CcchhhhhHHHHCcCeEe
Confidence 223345577777777544
No 401
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.87 E-value=0.00019 Score=54.44 Aligned_cols=136 Identities=20% Similarity=0.217 Sum_probs=67.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDT-AGQ--------------------- 87 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~--------------------- 87 (237)
||++-|++|+|||||+++++..-.... .+. .-+....+.-++..+-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-Ccc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999875431110 011 1122233333444455556665 221
Q ss_pred -chhch----hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC-CCCCCcCCCHHHHHHHHH
Q 026548 88 -ERYRA----VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS-DLVDMRAVSAEDAVEFAE 161 (237)
Q Consensus 88 -~~~~~----~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~-D~~~~~~~~~~~~~~~~~ 161 (237)
+.+.. .....+..+| ++++|-=.+.-+ ....|.+.+......+.|++.++.+. +.. -..++..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~~--------~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDNP--------FLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--SC--------CHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCcH--------HHHHHHh
Confidence 11111 1122224556 777883321111 01223344444444578888888766 321 2456666
Q ss_pred HcCCeEEEEcCCCCCCHH
Q 026548 162 DQGLFFSEASALNGDNVD 179 (237)
Q Consensus 162 ~~~~~~~~~Sa~~~~gi~ 179 (237)
..++.+++++..+.+.+.
T Consensus 147 ~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDALP 164 (168)
T ss_dssp TTTSEEEE--TTTCCCHH
T ss_pred CCCcEEEEeChhHHhhHh
Confidence 778899999888777654
No 402
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=2.2e-05 Score=65.96 Aligned_cols=159 Identities=20% Similarity=0.127 Sum_probs=93.9
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCC-------------------------------CcCCCCCCcceeEEEEEE
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNE-------------------------------FFFDSKSTIGVEFQTRTV 70 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 70 (237)
..+....++++++|...+||||+-..+.... -........+.......+
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 3444567999999999999999875442210 001111112223333333
Q ss_pred EECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCC
Q 026548 71 TINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR---QSFDHVARWVEELRAH-ADSSIRIILIGNKSDLV 146 (237)
Q Consensus 71 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~ 146 (237)
.... -++.+.|+||+..|-.....-..++|..++|+++... ..|+.-.+-....... ...-...|+++||+|-+
T Consensus 153 Ete~--~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddP 230 (501)
T KOG0459|consen 153 ETEN--KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 230 (501)
T ss_pred Eecc--eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCC
Confidence 3333 3577999999999988777778899999999998542 2233221111111111 11235578999999964
Q ss_pred C--CcCCC----HHHHHHHHHHcC------CeEEEEcCCCCCCHHHHH
Q 026548 147 D--MRAVS----AEDAVEFAEDQG------LFFSEASALNGDNVDTAF 182 (237)
Q Consensus 147 ~--~~~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~ 182 (237)
. +..-. .+....|.+..| ..++++|..+|.++.+..
T Consensus 231 tvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 231 TVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred ccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 3 11111 223444555443 348999999999988754
No 403
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=0.00022 Score=61.95 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=55.8
Q ss_pred EEEEEEeCCCcchhc----hhhHhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548 77 IKAQIWDTAGQERYR----AVTSAYYR---GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 149 (237)
+.+.|+||+|..... .....++. .-.-+++|++++... ..+...+..+... + +--+|+||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 467899999965443 12333333 224567888876432 2333333333221 1 2358899999643
Q ss_pred CCCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHH
Q 026548 150 AVSAEDAVEFAEDQGLFFSEASALNGDNV-DTAF 182 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~ 182 (237)
....+..++...+.|+..++ +|.+| +++.
T Consensus 372 --~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl~ 401 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT--NGQRVPDDIK 401 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe--CCCCChhhhh
Confidence 33467788888999987776 67775 4443
No 404
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.00018 Score=66.24 Aligned_cols=145 Identities=13% Similarity=0.098 Sum_probs=79.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCC-C-C-CCcceeEEE---------------EEEE-E-----------CCEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFD-S-K-STIGVEFQT---------------RTVT-I-----------NGKIIK 78 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~-~-~-~~~~~~~~~---------------~~~~-~-----------~~~~~~ 78 (237)
--|+|+|+.|+||||.+..|........ . . ..++.+.+. ..+. . .-..+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 3589999999999999998875321100 0 0 000000000 0000 0 001235
Q ss_pred EEEEeCCCcchhchh----hHhhh--cCCcEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548 79 AQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITK-RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV 151 (237)
Q Consensus 79 ~~l~Dt~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 151 (237)
+.|+||+|....... ...+. ...+-.++|+|++. .+.+.++. ..+...... -+-=+|+||.|-..
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~-~i~glIlTKLDEt~---- 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGE-DVDGCIITKLDEAT---- 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccC-CCCEEEEeccCCCC----
Confidence 789999994332221 11111 23455789999875 33333333 333221100 12358899999643
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHH
Q 026548 152 SAEDAVEFAEDQGLFFSEASALNGDNV-DTAFF 183 (237)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~~ 183 (237)
..-.+..+....++|+..++ +|.+| +++..
T Consensus 338 ~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~ 368 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYVS--TGQKVPEHLEL 368 (767)
T ss_pred CccHHHHHHHHHCCCeEEEe--cCCCChhhccc
Confidence 34467788888999988886 77777 55443
No 405
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.83 E-value=0.00013 Score=54.17 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=36.3
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 144 (237)
+.+.|+||+|..... ..++..+|.+|++....-.+.+.-++. . +...+ -++++||+|
T Consensus 92 ~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~-~~~~~-----~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA--G-IMEIA-----DIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh--h-Hhhhc-----CEEEEeCCC
Confidence 568899999864322 348889999999988774443333221 1 22222 378899987
No 406
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.82 E-value=0.00014 Score=59.54 Aligned_cols=93 Identities=20% Similarity=0.212 Sum_probs=65.7
Q ss_pred hhHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEc
Q 026548 93 VTSAYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 93 ~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 171 (237)
+.+.-..+.|-+++|+++.+|+ +...+.+++-.... .++..+|++||+|+..+.....++...+...++.+++.+|
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s 148 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS 148 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence 3344445677788888888865 44455554444333 4788889999999986544333456667778999999999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 026548 172 ALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 172 a~~~~gi~~~~~~l~~~ 188 (237)
++++++++++...+..+
T Consensus 149 ~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 149 AKNGDGLEELAELLAGK 165 (301)
T ss_pred CcCcccHHHHHHHhcCC
Confidence 99999999887766543
No 407
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.82 E-value=0.00023 Score=59.60 Aligned_cols=85 Identities=9% Similarity=0.064 Sum_probs=48.6
Q ss_pred EEEEEEeCCCcchhchhhHhhhc--------CCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYR--------GALGAVVVYDITKRQSF-DHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
....++.+.|..........++. ..+++|.|+|+.+-... +.......++... =+|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 44568888887655554444321 24789999998753221 1111122333332 279999999875
Q ss_pred CcCCCHHHHHHHHHHcC--CeEEEEc
Q 026548 148 MRAVSAEDAVEFAEDQG--LFFSEAS 171 (237)
Q Consensus 148 ~~~~~~~~~~~~~~~~~--~~~~~~S 171 (237)
. .+.+.+..+.++ ++++.++
T Consensus 165 ~----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 E----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred H----HHHHHHHHHHhCCCCEEEEec
Confidence 3 245555555554 5566554
No 408
>PRK13695 putative NTPase; Provisional
Probab=97.80 E-value=0.00044 Score=52.64 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=41.9
Q ss_pred hhcCCcEEEEEEEC---CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCC
Q 026548 97 YYRGALGAVVVYDI---TKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL 173 (237)
Q Consensus 97 ~~~~~d~~ilv~d~---~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 173 (237)
.+..++. +++|- .+..+ ..+.+.+......+.|++++.+|... .....++....+..+++++-
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~~- 158 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELTP- 158 (174)
T ss_pred ccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEcc-
Confidence 3455664 67783 22222 22233333333357899999998532 12344566666778888854
Q ss_pred CCCCHHHHHHHHHHH
Q 026548 174 NGDNVDTAFFRLLQE 188 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~ 188 (237)
++=+++.+.+.+.
T Consensus 159 --~~r~~~~~~~~~~ 171 (174)
T PRK13695 159 --ENRDSLPFEILNR 171 (174)
T ss_pred --hhhhhHHHHHHHH
Confidence 3444666666554
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.79 E-value=4.2e-05 Score=66.45 Aligned_cols=83 Identities=17% Similarity=0.073 Sum_probs=50.3
Q ss_pred EEEEEeCCCcchhchhh----Hh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcC
Q 026548 78 KAQIWDTAGQERYRAVT----SA--YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRA 150 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~ 150 (237)
.+.|+||+|........ .. .+-.+|.+++|+|++... +.......+.. .++ .-+|+||.|...
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~----~l~i~gvIlTKlD~~a--- 246 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE----AVGIGGIIITKLDGTA--- 246 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh----cCCCCEEEEecccCCC---
Confidence 67899999965443221 11 134678899999987642 22122222322 222 357889999643
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 026548 151 VSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~S 171 (237)
..-.+..+....+.|+.+++
T Consensus 247 -~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 -KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred -cccHHHHHHHHHCcCEEEEe
Confidence 23456777778888877765
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.00048 Score=60.53 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=53.9
Q ss_pred EEEEEeCCCcchhchh---hHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548 78 KAQIWDTAGQERYRAV---TSAYYRG---ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV 151 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~~---~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 151 (237)
.+.++||+|....... ....+.. ..-.++|+|++... ..+......+.. ....-+|+||.|-..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~---- 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA---- 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc----
Confidence 4679999994433211 1112221 12367888886432 222222222222 223457889999643
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHH
Q 026548 152 SAEDAVEFAEDQGLFFSEASALNGDNV-DTAFF 183 (237)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~~ 183 (237)
..-.+..+....++++..++ +|.+| +++..
T Consensus 406 ~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~ 436 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHL 436 (484)
T ss_pred cchHHHHHHHHHCCCeEEEe--cCCCChhhhcc
Confidence 34567888888999988776 77777 55443
No 411
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00041 Score=59.45 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=58.0
Q ss_pred EEEEEEeCCCcchhch----hhHhhhcCC--c-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548 77 IKAQIWDTAGQERYRA----VTSAYYRGA--L-GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~----~~~~~~~~~--d-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 149 (237)
+.+.|+||+|...... ....++... + -.++|+|++... ..+...++.+... -+-=+|+||.|-..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~-- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT-- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC--
Confidence 5688999999554332 122233322 3 578999998652 3343444443221 13458899999643
Q ss_pred CCCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHH
Q 026548 150 AVSAEDAVEFAEDQGLFFSEASALNGDNV-DTAFF 183 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~~ 183 (237)
..-.+..++...+.|+..++ +|.+| +++..
T Consensus 327 --~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~ 357 (388)
T PRK12723 327 --CVGNLISLIYEMRKEVSYVT--DGQIVPHNISI 357 (388)
T ss_pred --cchHHHHHHHHHCCCEEEEe--CCCCChhhhhh
Confidence 34567788888899977776 77777 44443
No 412
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.76 E-value=0.00029 Score=59.85 Aligned_cols=140 Identities=17% Similarity=0.225 Sum_probs=79.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCC---CcceeEEEE---------------EEEE------------CCEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKS---TIGVEFQTR---------------TVTI------------NGKII 77 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~---~~~~~~~~~---------------~~~~------------~~~~~ 77 (237)
.--|+++||.|+||||-+-.|..+-.-..... .++++.+.. .+.+ .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56799999999999999987755433111111 111111100 0000 00124
Q ss_pred EEEEEeCCCcchhchh----hHhhhcCC--cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548 78 KAQIWDTAGQERYRAV----TSAYYRGA--LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV 151 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~~----~~~~~~~~--d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 151 (237)
.++|+||.|...+... ...++..+ .-+.+|++++.. .+++...+..+.... .--+++||.|-. .
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~----i~~~I~TKlDET----~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP----IDGLIFTKLDET----T 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC----cceeEEEccccc----C
Confidence 5889999997666543 33344333 335677787754 345555555554321 124789999953 2
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 152 SAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
+.-.....+...+.|+..++ +|..|.
T Consensus 353 s~G~~~s~~~e~~~PV~YvT--~GQ~VP 378 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVT--NGQRVP 378 (407)
T ss_pred chhHHHHHHHHhCCCeEEEe--CCCCCC
Confidence 45567777778888866654 555443
No 413
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.0003 Score=59.74 Aligned_cols=92 Identities=16% Similarity=0.104 Sum_probs=54.1
Q ss_pred EEEEEEeCCCcchhchh----hHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRAV----TSAYYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~----~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
+.+.|+||+|....... ...+.. ..+.+++|++++. ...++...+..+.. --+--+|+||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~----l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE----IPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence 56789999996543321 222232 3366677776632 22333333333221 123458899999643
Q ss_pred CCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 151 VSAEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
..-.+..++...+.|+..++ +|..|.+
T Consensus 357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 34567888888999987776 5666554
No 414
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.74 E-value=0.0021 Score=48.28 Aligned_cols=142 Identities=10% Similarity=0.065 Sum_probs=95.2
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEe-CCCcchhchhhHhhhcCC
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD-TAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D-t~G~~~~~~~~~~~~~~~ 101 (237)
.+..+...|+++|..+.++..|..++...+- + +. +++.+-- .|--.+. ...-...
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~----------l~Vh~a~sLPLp~e~----~~lRprI 65 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDK------E----FK----------LKVHLAKSLPLPSEN----NNLRPRI 65 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhcc------c----ee----------EEEEEeccCCCcccc----cCCCcee
Confidence 4566688999999999999999999986321 1 11 1111111 0100111 1123568
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 181 (237)
|.++|++|.....+++.++.-+..+....-.+ .+.++.+-....+...+..+++.+++..+.++++.+.-.+.++..
T Consensus 66 DlIVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~-- 142 (176)
T PF11111_consen 66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT-- 142 (176)
T ss_pred EEEEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH--
Confidence 99999999999999998877666654333222 355666666666667888999999999999999999877776665
Q ss_pred HHHHHHHHHHhh
Q 026548 182 FFRLLQEIYGAV 193 (237)
Q Consensus 182 ~~~l~~~i~~~~ 193 (237)
.+++.++...
T Consensus 143 --~lAqRLL~~l 152 (176)
T PF11111_consen 143 --SLAQRLLRML 152 (176)
T ss_pred --HHHHHHHHHH
Confidence 4444444443
No 415
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.74 E-value=0.00084 Score=56.15 Aligned_cols=94 Identities=20% Similarity=0.175 Sum_probs=54.0
Q ss_pred EEEEEEeCCCcchhchhhHhhh--------cCCcEEEEEEECCChhh-HHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548 77 IKAQIWDTAGQERYRAVTSAYY--------RGALGAVVVYDITKRQS-FDHVAR-WVEELRAHADSSIRIILIGNKSDLV 146 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s-~~~~~~-~~~~~~~~~~~~~p~vvv~nK~D~~ 146 (237)
+...++.+.|..........+. -..|++|-|+|+.+-.. ...+.. ...++... =+|++||+|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 3455777777555433333322 24577999999877332 222222 23333332 28999999998
Q ss_pred CCcCCCHHHHHHHHHHcC--CeEEEEcCCCCCCHH
Q 026548 147 DMRAVSAEDAVEFAEDQG--LFFSEASALNGDNVD 179 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 179 (237)
.... .+......++++ ++++.++. .+....
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~ 190 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLA 190 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHH
Confidence 7542 455566666665 56888776 334443
No 416
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.70 E-value=0.00026 Score=42.99 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=33.5
Q ss_pred HhhhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548 95 SAYYRGALGAVVVYDITK--RQSFDHVARWVEELRAHADSSIRIILIGNKSD 144 (237)
Q Consensus 95 ~~~~~~~d~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 144 (237)
....+-.++++|++|++. ..+.+.....++.++... .+.|+++|.||+|
T Consensus 8 ~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 8 TALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp HGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred HHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 344566789999999987 566777777888888876 4899999999998
No 417
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00014 Score=62.50 Aligned_cols=140 Identities=17% Similarity=0.230 Sum_probs=75.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC-CcCC------C-C--------------CCcceeEEEEE-E-E----ECCEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE-FFFD------S-K--------------STIGVEFQTRT-V-T----INGKIIKAQ 80 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~-~~~~------~-~--------------~~~~~~~~~~~-~-~----~~~~~~~~~ 80 (237)
.-++|+|++|+||||++..|.... .... . + ...+..+.... . . +....+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886421 0000 0 0 00011111000 0 0 011234678
Q ss_pred EEeCCCcchhch----hhHhhhc-----CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548 81 IWDTAGQERYRA----VTSAYYR-----GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV 151 (237)
Q Consensus 81 l~Dt~G~~~~~~----~~~~~~~-----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 151 (237)
|+||+|...... .+..+++ ...-.++|+|++... +.+...+..+.. --+-=+|+||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~---- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEAD---- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCC----
Confidence 999999543211 1222222 133578899987643 222233333321 122358899999643
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 152 SAEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
..-.+..++...+.|+..++ +|.+|.+
T Consensus 374 ~~G~il~i~~~~~lPI~ylt--~GQ~VPe 400 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYLS--VGQEVPF 400 (432)
T ss_pred CccHHHHHHHHHCCCEEEEe--cCCCCCC
Confidence 34457788888899877776 5555444
No 418
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.66 E-value=9.7e-05 Score=56.58 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=42.8
Q ss_pred EEEEEEeCCCcchhchhh---Hh--hhcCCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRAVT---SA--YYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~---~~--~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
....|+.+.|......+. .. ..-..+.+|.|+|+.+-.....+.. +..++.. + =+|++||+|+....
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-A-----DvIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-A-----DVIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh-c-----CEEEEeccccCChh-
Confidence 456677888855444431 11 1235688999999976433333333 2333333 2 27999999987643
Q ss_pred CCHHHHHHHHHHcC
Q 026548 151 VSAEDAVEFAEDQG 164 (237)
Q Consensus 151 ~~~~~~~~~~~~~~ 164 (237)
...+...+..+..+
T Consensus 158 ~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 158 QKIERVREMIRELN 171 (178)
T ss_dssp --HHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHC
Confidence 12345555555543
No 419
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00042 Score=56.52 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=77.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcC------C---------------CCCCcceeEEEEEEE---------E-CCEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFF------D---------------SKSTIGVEFQTRTVT---------I-NGKII 77 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~------~---------------~~~~~~~~~~~~~~~---------~-~~~~~ 77 (237)
-+++++|++|+||||++..+...-... . +....+..+....-. . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 589999999999999998764321100 0 000011111110000 0 00135
Q ss_pred EEEEEeCCCcchhchh----hHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548 78 KAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV 151 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 151 (237)
.+.|+||+|....... +..++ ...+-+++|+|++... +++..++..+.. -.+--+|+||.|-..
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~---- 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA---- 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC----
Confidence 6789999996533221 22222 2446689999986421 233333333332 123458899999644
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 152 SAEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
..-.+..++...+.|+..++ +|.++.+
T Consensus 226 ~~G~~l~~~~~~~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 226 SSGELLKIPAVSSAPIVLMT--DGQDVKK 252 (270)
T ss_pred CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 23467778888899977776 5665553
No 420
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.63 E-value=0.00044 Score=60.04 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=50.3
Q ss_pred EEEEEEeCCCcchhchhh----Hhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRAVT----SAY--YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
+.+.|+||+|........ ..+ .-..|.+++|+|+...+ +...+...+.... + ..-+|+||.|...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~--- 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDA--- 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence 457899999954332211 111 23568889999987543 3333333343222 1 2357899999532
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 026548 151 VSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~S 171 (237)
....+..++...++|+.++.
T Consensus 254 -~~G~~lsi~~~~~~PI~fi~ 273 (428)
T TIGR00959 254 -RGGAALSVRSVTGKPIKFIG 273 (428)
T ss_pred -cccHHHHHHHHHCcCEEEEe
Confidence 12247777888888877765
No 421
>PRK10867 signal recognition particle protein; Provisional
Probab=97.63 E-value=0.00068 Score=58.94 Aligned_cols=85 Identities=16% Similarity=0.019 Sum_probs=48.9
Q ss_pred EEEEEEeCCCcchhchh----hHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
+.+.|+||+|....... ...+. -..+.+++|+|+...+ +.......+.... + ..-+|+||.|....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~r-- 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDAR-- 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCccc--
Confidence 56889999995432211 11111 2567789999986532 2223333333221 1 23577899996331
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 026548 151 VSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~S 171 (237)
.-.+.......++|+.+++
T Consensus 256 --gG~alsi~~~~~~PI~fig 274 (433)
T PRK10867 256 --GGAALSIRAVTGKPIKFIG 274 (433)
T ss_pred --ccHHHHHHHHHCcCEEEEe
Confidence 2236777778888877765
No 422
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.61 E-value=4.8e-05 Score=63.88 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=43.7
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
..+-++++|+|-||+||||+||+|..+..-... ...|.+.....+..+. .+.|.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCc
Confidence 355799999999999999999999988863322 3444555556666654 477999999
No 423
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00013 Score=61.17 Aligned_cols=65 Identities=20% Similarity=0.089 Sum_probs=39.7
Q ss_pred EEEEEEEEeCCCcchhc-hhhHh-----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548 75 KIIKAQIWDTAGQERYR-AVTSA-----YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~-~~~~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 145 (237)
+.+.++|.||.|..... .+... -.-..|-+|+|+|++-.++.......++..... --|++||.|.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv------g~vIlTKlDG 252 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV------GAVILTKLDG 252 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc------ceEEEEeccc
Confidence 34678999999944332 22221 123568899999999877666655544443221 1356677775
No 424
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.0006 Score=59.16 Aligned_cols=128 Identities=18% Similarity=0.257 Sum_probs=79.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC--------------CCCCcceeEEEEEEEE----------------CCEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD--------------SKSTIGVEFQTRTVTI----------------NGKI 76 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~----------------~~~~ 76 (237)
+..++-|+.+..-|||||-..|....-... .....+++....-+.. ++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 456788999999999999998864321111 0011122222222221 3445
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-CCcCCCHHH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV-DMRAVSAED 155 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~-~~~~~~~~~ 155 (237)
+-+.|+|.||+-.|.+.....++-.|+.++|+|.-+.--.+.-.-+.+.+.+ .+.-++++||.|.. -+-++..|+
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~Ee 173 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEE 173 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHH
Confidence 7799999999999999999999999999999998764222221112222332 34456889999942 123445554
Q ss_pred HHH
Q 026548 156 AVE 158 (237)
Q Consensus 156 ~~~ 158 (237)
.-+
T Consensus 174 Lyq 176 (842)
T KOG0469|consen 174 LYQ 176 (842)
T ss_pred HHH
Confidence 433
No 425
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.42 E-value=0.00063 Score=49.85 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=59.7
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECC
Q 026548 32 VVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT 111 (237)
Q Consensus 32 ~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 111 (237)
+.-|..|+|||++.-.+...-.. ......-.+..... ....+.+.++|+|+.. .......+..+|.++++++.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~---~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGL---ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCC---CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 34568899999987655322110 00011101100000 0011567899998753 333456788999999999876
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548 112 KRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145 (237)
Q Consensus 112 ~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 145 (237)
..++......++.+.... ...++.+|+|+.+.
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 444444444444444332 34577899999974
No 426
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.41 E-value=0.00054 Score=53.94 Aligned_cols=60 Identities=32% Similarity=0.319 Sum_probs=36.2
Q ss_pred EEEEeC-CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCC-CcEEEEEeCCCC
Q 026548 79 AQIWDT-AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDL 145 (237)
Q Consensus 79 ~~l~Dt-~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~p~vvv~nK~D~ 145 (237)
+.+.|| +|.+.|.. ...+++|.+|+|+|.+- .++...++... +... .+ .++.+|+||.|-
T Consensus 136 ~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taeri~~-L~~e--lg~k~i~~V~NKv~e 197 (255)
T COG3640 136 VVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAERIKE-LAEE--LGIKRIFVVLNKVDE 197 (255)
T ss_pred EEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHHHHH-HHHH--hCCceEEEEEeeccc
Confidence 445665 44444433 45578999999999864 33333322222 2222 24 789999999984
No 427
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.40 E-value=0.0009 Score=54.94 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=62.9
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc---------------
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE--------------- 88 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------------- 88 (237)
...+..+++++|++|.|||+++++|....... ..... ..+.+.++.+|...
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 33445689999999999999999999876322 21110 11233344444311
Q ss_pred ---------hhchhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcC-CCCcEEEEEeC
Q 026548 89 ---------RYRAVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHAD-SSIRIILIGNK 142 (237)
Q Consensus 89 ---------~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK 142 (237)
........+++....=++++|--+ ..+....+..++.++.... ..+|+|.+|++
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 112223356677777889998432 1233344455555555544 68999999876
No 428
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.38 E-value=0.0012 Score=45.57 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=48.7
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 31 VVVIG-DSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 31 i~v~G-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
|.+.| ..|+||||+...|...-.. ...+. ..+..+.. +.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56666 6799999988765432211 11111 11111111 567899999864332 3367788999999988
Q ss_pred CCChhhHHHHHHHHH
Q 026548 110 ITKRQSFDHVARWVE 124 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~ 124 (237)
.+ ..+...+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 65 445555555554
No 429
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.38 E-value=0.0014 Score=44.10 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=44.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh-hHhhhcCCcEEEEEEE
Q 026548 31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV-TSAYYRGALGAVVVYD 109 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~ilv~d 109 (237)
+++.|..|+||||+...+...-....+ +...++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK----------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999877644321111 111122 4679999875443321 2455678899999988
Q ss_pred CCCh
Q 026548 110 ITKR 113 (237)
Q Consensus 110 ~~~~ 113 (237)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7653
No 430
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.31 E-value=0.0018 Score=46.81 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=22.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
...++++|++|+|||+|++.+...-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34799999999999999999886653
No 431
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.28 E-value=0.00051 Score=56.14 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=37.6
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC------CCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF------DSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
....++.|+|-||+|||||+|++...+... ...+.++...... +.+...+ .+.+.||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp-~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRP-PVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCC-ceEEecCCC
Confidence 346789999999999999999886543321 2224443333222 3343333 367999999
No 432
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.00055 Score=58.51 Aligned_cols=85 Identities=18% Similarity=-0.022 Sum_probs=49.7
Q ss_pred EEEEEEeCCCcchhchhhH------hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRAVTS------AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
+.+.|+||+|........- .-.-+.|-+++|+|+.-.+...+....++.-... .=||+||.|....
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------tGvIlTKlDGdaR-- 254 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------TGVILTKLDGDAR-- 254 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------ceEEEEcccCCCc--
Confidence 4688999999554433221 1224668899999998766555554444432221 2488999996431
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 026548 151 VSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~S 171 (237)
---+.......+.|+.++.
T Consensus 255 --GGaALS~~~~tg~PIkFiG 273 (451)
T COG0541 255 --GGAALSARAITGKPIKFIG 273 (451)
T ss_pred --chHHHhhHHHHCCCeEEEe
Confidence 1134444455677765554
No 433
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.0035 Score=51.99 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=54.1
Q ss_pred EEEEEEeCCCcchhch-h------hHhhhcCC-----cEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 026548 77 IKAQIWDTAGQERYRA-V------TSAYYRGA-----LGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKS 143 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~-~------~~~~~~~~-----d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~ 143 (237)
+.+.|+||+|.-.-.. + ..+.+... +-+++++|++-.+ ++... +.++..... --+++||.
T Consensus 222 ~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA-k~F~eav~l------~GiIlTKl 294 (340)
T COG0552 222 IDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA-KIFNEAVGL------DGIILTKL 294 (340)
T ss_pred CCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH-HHHHHhcCC------ceEEEEec
Confidence 5678999999322111 1 12223333 3388888998754 33333 333332222 24889999
Q ss_pred CCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 144 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
|-...-. .+..++..+++|+.++. -|++++++-
T Consensus 295 DgtAKGG----~il~I~~~l~~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 295 DGTAKGG----IILSIAYELGIPIKFIG--VGEGYDDLR 327 (340)
T ss_pred ccCCCcc----eeeeHHHHhCCCEEEEe--CCCChhhcc
Confidence 9543222 34566778899988886 566666654
No 434
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.22 E-value=0.0003 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 435
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.16 E-value=0.0033 Score=43.75 Aligned_cols=62 Identities=23% Similarity=0.126 Sum_probs=41.3
Q ss_pred EEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 026548 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNK 142 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK 142 (237)
.+.++|+|+.... .....+..+|.++++++.+ ..+...+..+++.+...... ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 5779999886433 2345678899999988765 45566666666666654433 3456677774
No 436
>PRK08118 topology modulation protein; Reviewed
Probab=97.15 E-value=0.00036 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
+|+|+|++|||||||.+.|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988754
No 437
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.14 E-value=0.0058 Score=46.61 Aligned_cols=86 Identities=26% Similarity=0.243 Sum_probs=59.9
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE 154 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~ 154 (237)
..+.+.++|||+.... .....+..+|.+++++..+. .+...+..+++.+... +.|+.+|+|++|... ...+
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence 3467889999975432 34456788999999998774 4555666666655543 567899999998643 1345
Q ss_pred HHHHHHHHcCCeEEE
Q 026548 155 DAVEFAEDQGLFFSE 169 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (237)
+..++.+..+++++-
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677788888887653
No 438
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.12 E-value=0.00051 Score=42.69 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
-.+|.|+.|||||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998754
No 439
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.11 E-value=0.00039 Score=50.86 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 026548 31 VVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~ 51 (237)
|+++|+||||||||++.|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998743
No 440
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.11 E-value=0.012 Score=49.86 Aligned_cols=98 Identities=18% Similarity=0.140 Sum_probs=53.3
Q ss_pred EEEEEEeCCCcchhchhhHhhh-------cCCcEEEEEEECCChhh--H--------------------HHHHHH-HHHH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYY-------RGALGAVVVYDITKRQS--F--------------------DHVARW-VEEL 126 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~-------~~~d~~ilv~d~~~~~s--~--------------------~~~~~~-~~~~ 126 (237)
+...++++.|......+...+. -..|++|.|+|+.+-.. + ..+..+ ..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 3566888888666555444431 14578999999874211 0 001111 2333
Q ss_pred HHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-cC--CeEEEEcCCCCCCHHHHHH
Q 026548 127 RAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-QG--LFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 127 ~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~--~~~~~~Sa~~~~gi~~~~~ 183 (237)
... =+|++||+|+....+ .+.+.+..+. .+ .+++++. ........+|.
T Consensus 173 ~~A------D~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 ACA------DLVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred HhC------CEEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 222 289999999876332 3345555554 33 3566654 33455665554
No 441
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00043 Score=52.95 Aligned_cols=22 Identities=23% Similarity=0.658 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
+|+|+|+|||||||+.+.|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 442
>PRK07261 topology modulation protein; Provisional
Probab=97.07 E-value=0.00047 Score=52.45 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
+|+|+|++|||||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998644
No 443
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.02 E-value=0.0097 Score=45.48 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
=.++++|+.|+|||||++.+.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368999999999999999988765
No 444
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.01 E-value=0.00047 Score=51.88 Aligned_cols=22 Identities=18% Similarity=0.590 Sum_probs=17.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 445
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.00 E-value=0.00026 Score=59.63 Aligned_cols=84 Identities=20% Similarity=0.188 Sum_probs=50.6
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh--chhhHhhhcCCc
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY--RAVTSAYYRGAL 102 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~~~~~~d 102 (237)
....|-|.++|.||+||||+||.|...++-... |..+-+-....+++-. .+-|+|+||..-. .......+++
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmk---rIfLIDcPGvVyps~dset~ivLkG-- 377 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMK---RIFLIDCPGVVYPSSDSETDIVLKG-- 377 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHh---ceeEecCCCccCCCCCchHHHHhhc--
Confidence 445789999999999999999999988764433 2222111111122222 3669999994322 2333444443
Q ss_pred EEEEEEECCChhh
Q 026548 103 GAVVVYDITKRQS 115 (237)
Q Consensus 103 ~~ilv~d~~~~~s 115 (237)
++=|-.+.+++.
T Consensus 378 -vVRVenv~~pe~ 389 (572)
T KOG2423|consen 378 -VVRVENVKNPED 389 (572)
T ss_pred -eeeeeecCCHHH
Confidence 466667777653
No 446
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.00 E-value=0.0042 Score=53.92 Aligned_cols=54 Identities=28% Similarity=0.274 Sum_probs=33.0
Q ss_pred hhchhhHhhhcCCcEEEEEEE-CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548 89 RYRAVTSAYYRGALGAVVVYD-ITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144 (237)
Q Consensus 89 ~~~~~~~~~~~~~d~~ilv~d-~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 144 (237)
+.-...+.+++++++ +++| .+.--+...+..++..+......+.-+|++-+|.+
T Consensus 147 QRVEIlKaLyr~a~i--LILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 147 QRVEILKALYRGARL--LILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHHHHhcCCCE--EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 334456677888884 4455 23333445555666666665556788888877764
No 447
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.0003 Score=53.44 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
..-++|.||+|+|||||+++|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999999999877
No 448
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.96 E-value=0.0018 Score=50.20 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHh
Q 026548 29 FKVVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~ 49 (237)
.-+.|+|+.||||||+++.+.
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~ 24 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMY 24 (273)
T ss_pred eeEEEEccCCCCcchHHHHHH
Confidence 457899999999999999874
No 449
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.95 E-value=0.0085 Score=47.42 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=64.3
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF--DHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE 154 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~ 154 (237)
+.+.|+|+.|..... ....+..+|.+|+=+-.+..+.- .....|+..+.......+|.-|+.|++.-.. ......
T Consensus 84 ~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~ 160 (231)
T PF07015_consen 84 FDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQR 160 (231)
T ss_pred CCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHH
Confidence 568899998864433 44556679988887766643322 2234455555554557899999999986321 111122
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 155 DAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
.+.++.. ++|++.+.....+...++|.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 2333333 58889988888777777776
No 450
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.95 E-value=0.00086 Score=52.77 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=38.4
Q ss_pred EEEEEeCCCcchhch----h--hHhhhcCCcEEEEEEECCC------hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548 78 KAQIWDTAGQERYRA----V--TSAYYRGALGAVVVYDITK------RQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~----~--~~~~~~~~d~~ilv~d~~~------~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 145 (237)
...++|+||+-+... + +-.++...|.=+.++...| +..+ +..++-.+.....-..|-|=|+.|+|+
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 466999999655322 1 2233444666555555544 4333 223333333333346788888999997
Q ss_pred CC
Q 026548 146 VD 147 (237)
Q Consensus 146 ~~ 147 (237)
..
T Consensus 176 ~~ 177 (290)
T KOG1533|consen 176 LK 177 (290)
T ss_pred HH
Confidence 54
No 451
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.95 E-value=0.0033 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999988653
No 452
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.94 E-value=0.00085 Score=42.84 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 026548 31 VVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~ 51 (237)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998765
No 453
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.90 E-value=0.0058 Score=54.48 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
=+++.||+|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999988654
No 454
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.90 E-value=0.00086 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
.++|+|+.|+|||||++.|.+...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 689999999999999999887763
No 455
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.90 E-value=0.00071 Score=52.19 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.=|+|+|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 348999999999999999998754
No 456
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0011 Score=51.68 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
.++++|++|||||||++.+-+...
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 589999999999999999887764
No 457
>PRK01889 GTPase RsgA; Reviewed
Probab=96.84 E-value=0.0013 Score=56.03 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
-.++++|.+|+|||||+|.|.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3799999999999999999987543
No 458
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.80 E-value=0.015 Score=47.91 Aligned_cols=86 Identities=22% Similarity=0.262 Sum_probs=49.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcC--CcEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG--ALGAVVV 107 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~ilv 107 (237)
-|+|.|.+||||||+++.|-...+ . .+|-.....+..+....... .+.+.++
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~g~----------------~----------~~d~~~~~L~~~l~~~~~~~~~~~~~av~ 61 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDLGY----------------Y----------CVDNLPPSLLPKLVELLAQSGGIRKVAVV 61 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHcCC----------------e----------EECCcCHHHHHHHHHHHHhcCCCCCeEEE
Confidence 689999999999999999842211 0 12322222223333322222 3557888
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548 108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 144 (237)
+|+.+...+......+..+... +.++.+|.-.++
T Consensus 62 iD~r~~~~~~~~~~~~~~L~~~---g~~~~iI~L~a~ 95 (288)
T PRK05416 62 IDVRSRPFFDDLPEALDELRER---GIDVRVLFLDAS 95 (288)
T ss_pred EccCchhhHHHHHHHHHHHHHc---CCcEEEEEEECC
Confidence 8988765445566666666653 344444544444
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.79 E-value=0.0012 Score=47.26 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
..++|+|++|+||||+++.+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 3799999999999999999987654
No 460
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.79 E-value=0.041 Score=41.59 Aligned_cols=84 Identities=14% Similarity=-0.032 Sum_probs=50.1
Q ss_pred EEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH
Q 026548 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV 157 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~ 157 (237)
.+.++|+|+.... .....+..+|.+|++++.+. .+...+..++..+... ......+++|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence 5789999975433 24455788999999988764 3444454555554442 12346789999985431 1222234
Q ss_pred HHHHHcCCeEE
Q 026548 158 EFAEDQGLFFS 168 (237)
Q Consensus 158 ~~~~~~~~~~~ 168 (237)
++.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555666644
No 461
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.77 E-value=0.0014 Score=51.31 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=22.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
+...-|+|+|++|||||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999998764
No 462
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.76 E-value=0.0014 Score=47.92 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 026548 31 VVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~ 51 (237)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 463
>PRK10646 ADP-binding protein; Provisional
Probab=96.76 E-value=0.0087 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998654
No 464
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0016 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
=|.++|++|+|||||++.+.+-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 389999999999999999887654
No 465
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.73 E-value=0.0013 Score=51.50 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=21.9
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
...-|+|+|++|||||||++.|....
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 44568899999999999999997543
No 466
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.73 E-value=0.0014 Score=47.02 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 026548 31 VVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~ 52 (237)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999987654
No 467
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.73 E-value=0.0013 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 026548 31 VVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~ 52 (237)
|+|.|.+||||||+++.|...-
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999887653
No 468
>PRK06217 hypothetical protein; Validated
Probab=96.71 E-value=0.0014 Score=50.36 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
+|+|+|.+|||||||.++|...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 469
>PRK04195 replication factor C large subunit; Provisional
Probab=96.69 E-value=0.018 Score=51.13 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.-.++|.|++|+||||+++.|...-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999987643
No 470
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.69 E-value=0.0019 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
-|+|+|++|||||||++-+-+...
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 489999999999999998876553
No 471
>PRK14530 adenylate kinase; Provisional
Probab=96.65 E-value=0.0016 Score=51.31 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
+|+|+|+|||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998853
No 472
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.64 E-value=0.00096 Score=60.91 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=74.4
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEE---------------------------------
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRT--------------------------------- 69 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--------------------------------- 69 (237)
........|+|+|.+++||||.++.+.+..+.+.....++...-...
T Consensus 24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 44456788999999999999999999997665433222111110000
Q ss_pred --------------------EEE-CCEEEEEEEEeCCCc-------------chhchhhHhhhcCCcEEEEEEECCChhh
Q 026548 70 --------------------VTI-NGKIIKAQIWDTAGQ-------------ERYRAVTSAYYRGALGAVVVYDITKRQS 115 (237)
Q Consensus 70 --------------------~~~-~~~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s 115 (237)
..+ .-....+.++|.||. .....+...++..-+.+|+.+...+-+
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d- 182 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD- 182 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh-
Confidence 000 001134668999992 234557777888888888888766521
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 116 FDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
+. .-.++...++....+..++.|++|.|+..
T Consensus 183 ~a-ts~alkiarevDp~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 183 IA-TSPALVVAREVDPGGSRTLEVITKFDFMD 213 (657)
T ss_pred hh-cCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence 11 12344445555445667788888888643
No 473
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.63 E-value=0.0031 Score=45.06 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-|++-|+-|||||||++.|...
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 474
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.62 E-value=0.0083 Score=46.70 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 026548 31 VVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~ 52 (237)
|+|+|++||||||+++.+...-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999877543
No 475
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.61 E-value=0.0019 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.|+|+|++|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999996653
No 476
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.60 E-value=0.017 Score=51.06 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 026548 31 VVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~ 51 (237)
++|.|++|+||||-++.|..-
T Consensus 113 LLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHh
Confidence 778999999999999988643
No 477
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.58 E-value=0.0088 Score=43.95 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
=|++-|+-|||||||.+.+...-
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~L 49 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGL 49 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHc
Confidence 48899999999999999987543
No 478
>PRK03839 putative kinase; Provisional
Probab=96.58 E-value=0.0019 Score=49.35 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
+|+|+|.|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988654
No 479
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.56 E-value=0.0019 Score=49.52 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHh
Q 026548 29 FKVVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~ 49 (237)
.-|+|+|++||||||+++.|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999987
No 480
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.55 E-value=0.046 Score=40.19 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999998765
No 481
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.55 E-value=0.0019 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998765
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.54 E-value=0.0021 Score=49.02 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-|+|+|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48999999999999999998753
No 483
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.011 Score=49.25 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
..-|.++|..|+|||||++-|.++..
T Consensus 188 f~VIgvlG~QgsGKStllslLaans~ 213 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAANSL 213 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhccCh
Confidence 45688999999999999998887654
No 484
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.51 E-value=0.0023 Score=49.28 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=21.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.-.++|+|++|||||||++.|.+.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3479999999999999999988654
No 485
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.50 E-value=0.0023 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.|.|+|+.|||||||++.|+..-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987654
No 486
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.49 E-value=0.0066 Score=46.19 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=28.2
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
|++++|+|+.++.+... ..+.+.+. ....+.|+++|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999988643221 12222211 1124689999999999964
No 487
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.47 E-value=0.0021 Score=49.89 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 026548 31 VVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~ 51 (237)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 488
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.47 E-value=0.0025 Score=44.29 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHh
Q 026548 30 KVVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~ 49 (237)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999875
No 489
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.47 E-value=0.0024 Score=51.52 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-++++|+.|||||||++.+.+-
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999998763
No 490
>PRK13949 shikimate kinase; Provisional
Probab=96.46 E-value=0.0025 Score=48.39 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
+|+|+|++||||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999987643
No 491
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.45 E-value=0.0027 Score=46.24 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.|+++|++|+|||+|++.+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999876543
No 492
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.44 E-value=0.0027 Score=48.49 Aligned_cols=21 Identities=38% Similarity=0.389 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHh
Q 026548 29 FKVVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~ 49 (237)
-.++|+|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999885
No 493
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.44 E-value=0.0027 Score=50.76 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.5
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
+..++++|+|++|||||+|+..|+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999988754
No 494
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.0026 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-++|+|+.|+|||||++.+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999983
No 495
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.43 E-value=0.0028 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 68999999999999999998764
No 496
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.0073 Score=47.17 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
=.+++||+|+|||||++.|-.
T Consensus 35 VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999987654
No 497
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.42 E-value=0.0026 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988754
No 498
>PRK14531 adenylate kinase; Provisional
Probab=96.42 E-value=0.0028 Score=48.70 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.+|+++|+|||||||+.+.|...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988543
No 499
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.0033 Score=52.69 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 026548 31 VVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
++++||+|||||||++.+.+-..
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 89999999999999999987654
No 500
>PRK14532 adenylate kinase; Provisional
Probab=96.41 E-value=0.0028 Score=48.79 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
+|+++|+|||||||+.++|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
Done!