Query 026548
Match_columns 237
No_of_seqs 156 out of 1851
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 16:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.4E-40 1.2E-44 259.7 19.2 167 27-193 12-178 (216)
2 3cpj_B GTP-binding protein YPT 100.0 8.7E-36 3E-40 235.8 20.6 177 24-200 9-185 (223)
3 2bcg_Y Protein YP2, GTP-bindin 100.0 2.5E-34 8.7E-39 224.4 25.2 174 25-198 5-178 (206)
4 2bov_A RAla, RAS-related prote 100.0 2.5E-34 8.6E-39 224.0 23.2 168 26-194 12-180 (206)
5 3tkl_A RAS-related protein RAB 100.0 2.8E-33 9.6E-38 216.4 24.9 174 23-196 11-184 (196)
6 2gf9_A RAS-related protein RAB 100.0 2.2E-33 7.6E-38 216.2 24.2 177 18-194 12-188 (189)
7 2oil_A CATX-8, RAS-related pro 100.0 1.9E-33 6.6E-38 217.1 23.6 177 19-195 16-192 (193)
8 2ew1_A RAS-related protein RAB 100.0 1.4E-33 4.7E-38 219.9 22.8 174 23-196 21-194 (201)
9 2a5j_A RAS-related protein RAB 100.0 2.2E-33 7.7E-38 216.6 23.5 177 19-195 12-188 (191)
10 2fu5_C RAS-related protein RAB 100.0 3.4E-34 1.2E-38 219.4 18.5 173 25-197 5-177 (183)
11 2hup_A RAS-related protein RAB 100.0 1.5E-33 5.2E-38 219.5 22.2 174 20-193 21-195 (201)
12 2bme_A RAB4A, RAS-related prot 100.0 2.8E-33 9.7E-38 214.6 23.3 174 24-197 6-179 (186)
13 1z0f_A RAB14, member RAS oncog 100.0 4.9E-33 1.7E-37 211.6 22.7 169 23-191 10-178 (179)
14 2il1_A RAB12; G-protein, GDP, 100.0 2.2E-33 7.6E-38 217.0 20.9 175 18-192 16-191 (192)
15 2o52_A RAS-related protein RAB 100.0 2.6E-33 9E-38 217.9 21.3 178 20-197 17-194 (200)
16 1zbd_A Rabphilin-3A; G protein 100.0 1.1E-32 3.8E-37 214.5 24.2 173 24-196 4-176 (203)
17 3tw8_B RAS-related protein RAB 100.0 1.5E-32 5E-37 209.4 23.2 171 24-195 5-175 (181)
18 2efe_B Small GTP-binding prote 100.0 1.6E-32 5.5E-37 209.4 22.7 169 24-192 8-176 (181)
19 1z08_A RAS-related protein RAB 100.0 6E-33 2E-37 209.6 19.2 167 25-191 3-169 (170)
20 3kkq_A RAS-related protein M-R 100.0 2.4E-32 8.4E-37 209.0 22.9 169 23-192 13-183 (183)
21 3bc1_A RAS-related protein RAB 100.0 1.9E-32 6.6E-37 211.0 22.3 177 20-196 3-190 (195)
22 1r2q_A RAS-related protein RAB 100.0 1.4E-32 4.8E-37 207.3 21.0 164 26-189 4-167 (170)
23 3dz8_A RAS-related protein RAB 100.0 7.8E-34 2.7E-38 219.2 13.9 173 22-194 17-189 (191)
24 3oes_A GTPase rhebl1; small GT 100.0 4.2E-33 1.4E-37 216.8 18.1 177 18-195 14-191 (201)
25 3cbq_A GTP-binding protein REM 100.0 1.2E-32 4.2E-37 213.5 20.5 174 20-193 15-190 (195)
26 1g16_A RAS-related protein SEC 100.0 1.2E-32 4.2E-37 207.7 20.0 167 27-194 2-168 (170)
27 1vg8_A RAS-related protein RAB 100.0 8.4E-33 2.9E-37 215.6 19.6 172 25-197 5-181 (207)
28 1ek0_A Protein (GTP-binding pr 100.0 1.8E-32 6.1E-37 206.7 20.6 163 27-189 2-167 (170)
29 2g6b_A RAS-related protein RAB 100.0 3.8E-32 1.3E-36 207.2 22.6 170 24-193 6-176 (180)
30 1z0j_A RAB-22, RAS-related pro 100.0 6.5E-32 2.2E-36 203.8 23.6 164 26-189 4-167 (170)
31 3t5g_A GTP-binding protein RHE 100.0 3.1E-32 1E-36 208.1 21.9 168 26-194 4-172 (181)
32 2fg5_A RAB-22B, RAS-related pr 100.0 1.1E-32 3.9E-37 212.9 19.5 172 19-190 14-185 (192)
33 1z2a_A RAS-related protein RAB 100.0 2.2E-32 7.5E-37 206.0 20.0 165 26-191 3-167 (168)
34 2fn4_A P23, RAS-related protei 100.0 9.4E-32 3.2E-36 204.9 22.7 170 24-194 5-175 (181)
35 2f7s_A C25KG, RAS-related prot 100.0 1.1E-32 3.6E-37 216.9 17.9 178 18-195 15-203 (217)
36 3q85_A GTP-binding protein REM 100.0 4.3E-32 1.5E-36 204.8 20.5 165 28-192 2-168 (169)
37 2nzj_A GTP-binding protein REM 100.0 9.8E-32 3.3E-36 203.8 22.1 167 27-194 3-172 (175)
38 3c5c_A RAS-like protein 12; GD 100.0 4.1E-32 1.4E-36 209.0 20.0 167 23-191 16-186 (187)
39 2p5s_A RAS and EF-hand domain 100.0 2.1E-32 7.1E-37 212.6 18.5 170 22-191 22-197 (199)
40 3cph_A RAS-related protein SEC 100.0 1.2E-31 4E-36 210.0 22.8 172 24-196 16-187 (213)
41 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.7E-31 5.8E-36 203.0 23.0 167 25-192 4-175 (177)
42 1z06_A RAS-related protein RAB 100.0 7.8E-32 2.7E-36 207.5 21.2 168 24-191 16-188 (189)
43 2y8e_A RAB-protein 6, GH09086P 100.0 6E-32 2E-36 205.6 20.1 164 27-190 13-176 (179)
44 3clv_A RAB5 protein, putative; 100.0 2.4E-31 8.3E-36 206.3 23.5 167 25-194 4-207 (208)
45 3ihw_A Centg3; RAS, centaurin, 100.0 1.8E-31 6.2E-36 205.0 22.5 166 22-194 14-183 (184)
46 2j0v_A RAC-like GTP-binding pr 100.0 2.2E-32 7.7E-37 214.3 17.2 168 26-195 7-184 (212)
47 2hxs_A RAB-26, RAS-related pro 100.0 3.2E-32 1.1E-36 207.2 17.5 167 26-192 4-174 (178)
48 3q3j_B RHO-related GTP-binding 100.0 4.3E-32 1.5E-36 213.4 18.7 171 22-194 21-206 (214)
49 1x3s_A RAS-related protein RAB 100.0 3.6E-31 1.2E-35 204.3 23.1 169 24-193 11-180 (195)
50 1u8z_A RAS-related protein RAL 100.0 2E-31 6.9E-36 200.4 21.2 164 27-191 3-167 (168)
51 3q72_A GTP-binding protein RAD 100.0 2.4E-31 8.1E-36 200.2 20.7 163 28-192 2-165 (166)
52 1c1y_A RAS-related protein RAP 100.0 1.8E-31 6.1E-36 200.8 19.2 162 28-190 3-166 (167)
53 2a9k_A RAS-related protein RAL 100.0 5.7E-31 1.9E-35 201.6 21.9 167 26-193 16-183 (187)
54 1kao_A RAP2A; GTP-binding prot 100.0 3.2E-31 1.1E-35 199.1 20.0 163 28-191 3-166 (167)
55 3reg_A RHO-like small GTPase; 100.0 5.6E-31 1.9E-35 203.5 21.8 168 24-193 19-190 (194)
56 2atv_A RERG, RAS-like estrogen 100.0 4.5E-31 1.5E-35 204.5 21.2 169 24-194 24-194 (196)
57 2atx_A Small GTP binding prote 100.0 4.5E-31 1.5E-35 204.0 21.1 171 19-191 9-193 (194)
58 2q3h_A RAS homolog gene family 100.0 5.9E-31 2E-35 204.4 21.8 171 22-194 14-198 (201)
59 2g3y_A GTP-binding protein GEM 100.0 5.4E-31 1.8E-35 206.6 21.4 170 23-193 32-205 (211)
60 1ky3_A GTP-binding protein YPT 100.0 1.7E-31 5.9E-36 203.6 18.1 169 25-193 5-180 (182)
61 4dsu_A GTPase KRAS, isoform 2B 100.0 1.9E-30 6.4E-35 199.1 23.9 168 27-196 3-171 (189)
62 2iwr_A Centaurin gamma 1; ANK 100.0 7.3E-31 2.5E-35 199.9 21.3 164 26-196 5-174 (178)
63 2yc2_C IFT27, small RAB-relate 100.0 4.5E-32 1.5E-36 211.4 14.5 170 26-195 18-196 (208)
64 2gf0_A GTP-binding protein DI- 100.0 3.6E-31 1.2E-35 205.0 18.8 164 27-192 7-172 (199)
65 1m7b_A RND3/RHOE small GTP-bin 100.0 5.9E-31 2E-35 201.8 18.5 165 25-191 4-183 (184)
66 1gwn_A RHO-related GTP-binding 100.0 7.5E-31 2.6E-35 205.0 18.2 167 23-191 23-204 (205)
67 2gco_A H9, RHO-related GTP-bin 100.0 4.5E-30 1.5E-34 199.7 22.2 165 25-191 22-200 (201)
68 3con_A GTPase NRAS; structural 100.0 7.8E-30 2.7E-34 196.3 23.1 168 25-194 18-186 (190)
69 2ce2_X GTPase HRAS; signaling 100.0 9.6E-30 3.3E-34 190.7 22.5 162 28-191 3-165 (166)
70 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.9E-30 9.9E-35 197.6 19.9 164 27-192 4-181 (186)
71 2j1l_A RHO-related GTP-binding 100.0 3.5E-30 1.2E-34 202.3 20.3 166 26-193 32-211 (214)
72 2erx_A GTP-binding protein DI- 100.0 4.3E-30 1.5E-34 194.0 19.0 162 27-189 2-165 (172)
73 3l0i_B RAS-related protein RAB 100.0 4.4E-33 1.5E-37 216.4 2.2 170 23-192 28-197 (199)
74 4djt_A GTP-binding nuclear pro 100.0 1.9E-30 6.6E-35 204.1 17.2 169 26-194 9-178 (218)
75 2fv8_A H6, RHO-related GTP-bin 100.0 1.1E-29 3.8E-34 198.4 21.1 165 26-192 23-201 (207)
76 2cjw_A GTP-binding protein GEM 100.0 1.6E-29 5.3E-34 195.5 20.9 166 27-193 5-174 (192)
77 4bas_A ADP-ribosylation factor 100.0 4.6E-30 1.6E-34 198.8 17.0 170 20-195 9-193 (199)
78 2f9l_A RAB11B, member RAS onco 100.0 6.8E-29 2.3E-33 192.8 23.7 171 26-196 3-173 (199)
79 3gj0_A GTP-binding nuclear pro 100.0 2.7E-30 9.3E-35 203.8 15.8 171 22-195 9-179 (221)
80 3t1o_A Gliding protein MGLA; G 100.0 2.2E-30 7.6E-35 200.0 14.3 168 24-195 10-196 (198)
81 3bwd_D RAC-like GTP-binding pr 100.0 8.4E-31 2.9E-35 200.0 11.6 163 26-190 6-180 (182)
82 4gzl_A RAS-related C3 botulinu 100.0 1.1E-29 3.7E-34 198.1 16.6 163 25-189 27-203 (204)
83 1oix_A RAS-related protein RAB 100.0 4.1E-28 1.4E-32 187.3 21.8 168 22-189 23-190 (191)
84 1zd9_A ADP-ribosylation factor 100.0 1.3E-28 4.5E-33 189.4 18.2 166 20-191 14-185 (188)
85 1ksh_A ARF-like protein 2; sma 100.0 3.1E-28 1E-32 186.7 19.7 161 26-193 16-182 (186)
86 2h57_A ADP-ribosylation factor 100.0 2.6E-28 8.8E-33 187.9 18.4 162 23-190 16-186 (190)
87 1r8s_A ADP-ribosylation factor 100.0 1.9E-29 6.5E-34 189.3 11.5 156 29-191 1-162 (164)
88 1upt_A ARL1, ADP-ribosylation 100.0 1.5E-28 5E-33 185.6 16.0 158 27-191 6-169 (171)
89 1f6b_A SAR1; gtpases, N-termin 100.0 2.3E-28 7.9E-33 189.8 15.7 155 27-188 24-196 (198)
90 1m2o_B GTP-binding protein SAR 100.0 5.7E-28 1.9E-32 186.3 17.7 155 27-188 22-189 (190)
91 2h17_A ADP-ribosylation factor 100.0 1.9E-28 6.4E-33 187.4 14.7 160 22-188 15-180 (181)
92 1zj6_A ADP-ribosylation factor 100.0 5.1E-28 1.7E-32 185.8 16.9 160 26-192 14-179 (187)
93 2b6h_A ADP-ribosylation factor 100.0 5.2E-29 1.8E-33 192.5 11.3 159 26-191 27-191 (192)
94 1fzq_A ADP-ribosylation factor 100.0 8.8E-28 3E-32 183.8 15.7 159 26-191 14-178 (181)
95 2wkq_A NPH1-1, RAS-related C3 100.0 3.3E-27 1.1E-31 196.7 20.4 164 26-191 153-330 (332)
96 2x77_A ADP-ribosylation factor 100.0 1.7E-28 5.8E-33 188.7 11.0 160 26-192 20-185 (189)
97 2zej_A Dardarin, leucine-rich 100.0 1.2E-28 4.1E-33 189.1 10.2 163 28-191 2-178 (184)
98 3llu_A RAS-related GTP-binding 100.0 1.3E-28 4.3E-33 190.8 10.2 165 20-189 12-195 (196)
99 1moz_A ARL1, ADP-ribosylation 100.0 9.9E-28 3.4E-32 183.2 14.9 160 26-192 16-181 (183)
100 3th5_A RAS-related C3 botulinu 99.9 2.2E-30 7.6E-35 201.8 0.0 164 24-189 26-203 (204)
101 2qu8_A Putative nucleolar GTP- 99.9 1.8E-26 6.3E-31 182.8 18.0 170 23-195 24-209 (228)
102 2wji_A Ferrous iron transport 99.9 8.7E-27 3E-31 175.6 14.7 153 28-189 3-163 (165)
103 3c5h_A Glucocorticoid receptor 99.9 7.7E-28 2.6E-32 194.0 6.5 167 22-190 13-254 (255)
104 3r7w_A Gtpase1, GTP-binding pr 99.9 2.1E-26 7.1E-31 190.4 13.3 162 27-192 2-182 (307)
105 2lkc_A Translation initiation 99.9 6.6E-26 2.3E-30 172.1 14.8 158 26-192 6-172 (178)
106 2fh5_B SR-beta, signal recogni 99.9 1.8E-25 6.2E-30 175.1 16.6 157 27-188 6-213 (214)
107 3o47_A ADP-ribosylation factor 99.9 1.5E-25 5E-30 186.9 16.5 159 26-191 163-327 (329)
108 2wjg_A FEOB, ferrous iron tran 99.9 1.2E-25 4.2E-30 172.3 13.3 158 27-193 6-171 (188)
109 2cxx_A Probable GTP-binding pr 99.9 7.8E-26 2.7E-30 173.5 11.6 157 29-194 2-187 (190)
110 1svi_A GTP-binding protein YSX 99.9 1.3E-25 4.3E-30 173.2 12.5 160 23-189 18-193 (195)
111 3r7w_B Gtpase2, GTP-binding pr 99.9 1.5E-26 5.1E-31 190.4 6.3 160 30-196 1-179 (331)
112 3lvq_E ARF-GAP with SH3 domain 99.9 7E-25 2.4E-29 192.5 17.0 160 25-191 319-484 (497)
113 3a1s_A Iron(II) transport prot 99.9 7.6E-25 2.6E-29 176.7 15.3 155 27-190 4-166 (258)
114 2gj8_A MNME, tRNA modification 99.9 1.3E-25 4.5E-30 170.4 10.2 152 28-189 4-164 (172)
115 2dyk_A GTP-binding protein; GT 99.9 7.3E-25 2.5E-29 163.6 12.6 150 29-189 2-160 (161)
116 3iev_A GTP-binding protein ERA 99.9 4.9E-24 1.7E-28 176.2 17.5 162 23-189 5-180 (308)
117 3pqc_A Probable GTP-binding pr 99.9 1.8E-24 6.2E-29 166.4 13.7 161 21-191 16-194 (195)
118 3dpu_A RAB family protein; roc 99.9 2.1E-25 7.3E-30 197.3 7.7 165 24-192 37-209 (535)
119 3iby_A Ferrous iron transport 99.9 1.2E-24 4E-29 175.3 11.2 151 29-188 2-164 (256)
120 3b1v_A Ferrous iron uptake tra 99.9 9.7E-25 3.3E-29 177.2 10.2 153 27-189 2-162 (272)
121 3k53_A Ferrous iron transport 99.9 6.7E-24 2.3E-28 172.4 13.7 156 28-191 3-166 (271)
122 3i8s_A Ferrous iron transport 99.9 2.8E-24 9.6E-29 174.9 9.5 154 28-190 3-168 (274)
123 4dhe_A Probable GTP-binding pr 99.9 3.5E-24 1.2E-28 168.7 9.8 166 22-193 23-213 (223)
124 2hjg_A GTP-binding protein ENG 99.9 4.6E-24 1.6E-28 184.3 9.8 188 26-219 173-383 (436)
125 2e87_A Hypothetical protein PH 99.9 3.3E-22 1.1E-26 168.5 18.9 163 26-193 165-338 (357)
126 1nrj_B SR-beta, signal recogni 99.9 3E-24 1E-28 168.6 5.2 145 24-177 8-170 (218)
127 4dcu_A GTP-binding protein ENG 99.9 2.5E-23 8.7E-28 180.7 10.5 163 25-193 192-371 (456)
128 3gee_A MNME, tRNA modification 99.9 1E-22 3.4E-27 177.0 12.7 157 27-190 232-397 (476)
129 3qq5_A Small GTP-binding prote 99.9 1.4E-23 4.8E-28 179.6 5.7 165 19-192 25-197 (423)
130 1wf3_A GTP-binding protein; GT 99.9 4.6E-22 1.6E-26 163.7 14.4 154 27-189 6-171 (301)
131 1xzp_A Probable tRNA modificat 99.9 6.1E-22 2.1E-26 172.2 12.7 154 28-192 243-406 (482)
132 1cip_A Protein (guanine nucleo 99.9 1.9E-21 6.5E-26 162.9 14.8 126 67-194 185-347 (353)
133 1lnz_A SPO0B-associated GTP-bi 99.9 2.6E-22 8.9E-27 167.5 9.4 158 29-191 159-330 (342)
134 3lxx_A GTPase IMAP family memb 99.9 6.6E-21 2.2E-25 151.9 16.8 165 23-191 24-214 (239)
135 1mky_A Probable GTP-binding pr 99.9 2.6E-21 8.9E-26 167.2 14.9 152 29-192 2-167 (439)
136 3sjy_A Translation initiation 99.9 2.4E-20 8.1E-25 159.6 17.8 157 25-189 5-190 (403)
137 3ohm_A Guanine nucleotide-bind 99.9 7.9E-21 2.7E-25 157.1 14.1 127 66-194 158-321 (327)
138 2qtf_A Protein HFLX, GTP-bindi 99.9 1.7E-20 5.7E-25 158.0 16.2 159 30-191 181-354 (364)
139 1wb1_A Translation elongation 99.8 8.9E-21 3.1E-25 165.4 14.4 155 27-190 18-188 (482)
140 1s0u_A EIF-2-gamma, translatio 99.8 2.6E-20 8.8E-25 159.6 16.9 159 26-190 6-197 (408)
141 2xtp_A GTPase IMAP family memb 99.8 9.3E-21 3.2E-25 152.8 13.3 164 25-192 19-209 (260)
142 3cb4_D GTP-binding protein LEP 99.8 9.3E-21 3.2E-25 168.4 14.4 158 27-190 3-181 (599)
143 3j2k_7 ERF3, eukaryotic polype 99.8 1.2E-20 4.2E-25 162.8 14.6 155 24-183 13-217 (439)
144 2ywe_A GTP-binding protein LEP 99.8 1.9E-20 6.5E-25 166.2 15.4 159 26-190 4-183 (600)
145 3geh_A MNME, tRNA modification 99.8 1.6E-21 5.4E-26 168.9 8.1 153 27-191 223-384 (462)
146 3lxw_A GTPase IMAP family memb 99.8 3.7E-20 1.3E-24 148.3 15.4 167 24-192 17-209 (247)
147 1ega_A Protein (GTP-binding pr 99.8 1.6E-20 5.4E-25 154.7 13.5 155 28-189 8-173 (301)
148 1zcb_A G alpha I/13; GTP-bindi 99.8 3.4E-20 1.1E-24 155.8 14.3 125 68-194 194-356 (362)
149 1mky_A Probable GTP-binding pr 99.8 8.7E-20 3E-24 157.7 16.9 160 26-191 178-355 (439)
150 3t5d_A Septin-7; GTP-binding p 99.8 3.8E-21 1.3E-25 156.4 7.6 160 26-189 6-202 (274)
151 1kk1_A EIF2gamma; initiation o 99.8 5.2E-20 1.8E-24 157.8 14.7 159 26-190 8-199 (410)
152 2hjg_A GTP-binding protein ENG 99.8 2.4E-21 8.1E-26 167.4 5.6 151 29-190 4-164 (436)
153 2qag_A Septin-2, protein NEDD5 99.8 3E-21 1E-25 162.6 5.7 164 26-195 35-237 (361)
154 3p26_A Elongation factor 1 alp 99.8 1.7E-20 5.8E-25 164.0 10.2 151 26-180 31-227 (483)
155 2xtz_A Guanine nucleotide-bind 99.8 8.2E-20 2.8E-24 153.0 13.6 120 75-194 181-348 (354)
156 2ged_A SR-beta, signal recogni 99.8 3.3E-20 1.1E-24 142.6 10.1 116 25-149 45-172 (193)
157 3izy_P Translation initiation 99.8 3.6E-22 1.2E-26 175.1 -2.2 158 27-189 3-166 (537)
158 4fid_A G protein alpha subunit 99.8 8.6E-20 2.9E-24 151.4 12.2 121 69-191 155-328 (340)
159 3tr5_A RF-3, peptide chain rel 99.8 5.3E-20 1.8E-24 161.8 11.5 115 27-147 12-148 (528)
160 1zun_B Sulfate adenylate trans 99.8 1.2E-19 4.2E-24 156.5 12.6 153 25-183 21-216 (434)
161 1azs_C GS-alpha; complex (lyas 99.8 7.4E-19 2.5E-23 148.9 16.0 126 68-195 210-389 (402)
162 1g7s_A Translation initiation 99.8 1.6E-19 5.6E-24 160.5 12.4 157 28-191 5-218 (594)
163 1jny_A EF-1-alpha, elongation 99.8 1.7E-20 5.8E-25 161.9 4.6 154 27-183 5-205 (435)
164 4dcu_A GTP-binding protein ENG 99.8 4.5E-20 1.6E-24 160.2 6.6 154 27-190 22-184 (456)
165 1d2e_A Elongation factor TU (E 99.8 1.4E-19 4.7E-24 154.5 9.5 156 28-189 3-193 (397)
166 3izq_1 HBS1P, elongation facto 99.8 6.7E-20 2.3E-24 163.8 7.8 154 26-181 165-362 (611)
167 2elf_A Protein translation elo 99.8 1.3E-19 4.4E-24 153.0 8.9 147 30-192 23-181 (370)
168 1r5b_A Eukaryotic peptide chai 99.8 2E-20 6.9E-25 162.7 3.7 155 26-182 41-243 (467)
169 2c78_A Elongation factor TU-A; 99.8 1.7E-19 5.8E-24 154.4 9.0 145 27-177 10-180 (405)
170 2aka_B Dynamin-1; fusion prote 99.8 2.1E-19 7.1E-24 147.6 8.4 161 24-188 22-250 (299)
171 1zo1_I IF2, translation initia 99.8 4.2E-21 1.4E-25 167.0 -2.2 152 27-187 3-163 (501)
172 1pui_A ENGB, probable GTP-bind 99.8 1.4E-18 4.9E-23 135.2 11.4 158 23-189 21-197 (210)
173 3def_A T7I23.11 protein; chlor 99.8 7.9E-18 2.7E-22 135.9 14.4 126 27-154 35-172 (262)
174 1f60_A Elongation factor EEF1A 99.8 2.4E-19 8.1E-24 155.6 4.3 150 27-181 6-202 (458)
175 1udx_A The GTP-binding protein 99.8 8.1E-18 2.8E-22 143.6 13.5 161 29-193 158-327 (416)
176 3avx_A Elongation factor TS, e 99.8 1.4E-18 4.8E-23 161.7 8.9 160 25-188 293-483 (1289)
177 2dy1_A Elongation factor G; tr 99.8 5.8E-18 2E-22 152.9 12.7 116 25-146 6-139 (665)
178 3mca_A HBS1, elongation factor 99.8 2.3E-19 8E-24 159.8 3.5 150 25-179 174-371 (592)
179 3t34_A Dynamin-related protein 99.7 1.8E-18 6E-23 145.9 6.7 156 27-185 33-255 (360)
180 2j69_A Bacterial dynamin-like 99.7 1.9E-17 6.6E-22 150.1 13.5 165 26-193 67-327 (695)
181 1dar_A EF-G, elongation factor 99.7 4.6E-17 1.6E-21 147.6 15.0 117 25-147 9-143 (691)
182 2qnr_A Septin-2, protein NEDD5 99.7 2.4E-18 8.3E-23 141.5 5.0 164 26-194 16-217 (301)
183 1h65_A Chloroplast outer envel 99.7 9.3E-17 3.2E-21 130.1 14.2 126 26-154 37-175 (270)
184 1jwy_B Dynamin A GTPase domain 99.7 4.6E-17 1.6E-21 134.6 12.6 162 25-190 21-261 (315)
185 2h5e_A Peptide chain release f 99.7 1.5E-16 5.1E-21 140.0 15.2 115 27-147 12-148 (529)
186 2rdo_7 EF-G, elongation factor 99.7 6.6E-16 2.3E-20 140.2 18.2 119 25-147 7-148 (704)
187 2xex_A Elongation factor G; GT 99.7 3.8E-16 1.3E-20 141.6 16.3 117 25-147 7-141 (693)
188 1wxq_A GTP-binding protein; st 99.7 1.8E-17 6E-22 141.1 6.4 85 29-113 1-114 (397)
189 1u0l_A Probable GTPase ENGC; p 99.7 1.3E-17 4.4E-22 137.2 4.9 134 43-187 32-169 (301)
190 2qag_C Septin-7; cell cycle, c 99.7 2.9E-17 9.8E-22 140.3 7.0 162 24-189 27-225 (418)
191 3vqt_A RF-3, peptide chain rel 99.6 7.3E-15 2.5E-19 129.8 15.5 116 26-147 29-166 (548)
192 1jal_A YCHF protein; nucleotid 99.6 5.8E-15 2E-19 123.5 14.0 145 29-173 3-239 (363)
193 2x2e_A Dynamin-1; nitration, h 99.6 2E-16 6.9E-21 132.9 5.1 159 26-187 29-254 (353)
194 2wsm_A Hydrogenase expression/ 99.6 4.2E-16 1.4E-20 122.3 4.1 155 27-192 29-215 (221)
195 3p32_A Probable GTPase RV1496/ 99.6 1E-15 3.5E-20 128.7 4.6 104 77-191 172-284 (355)
196 2qpt_A EH domain-containing pr 99.6 3.1E-15 1.1E-19 132.2 6.9 122 23-147 60-232 (550)
197 1n0u_A EF-2, elongation factor 99.6 8.9E-15 3E-19 135.2 9.9 117 26-146 17-163 (842)
198 2dby_A GTP-binding protein; GD 99.5 1.6E-14 5.3E-19 121.5 10.0 152 29-180 2-251 (368)
199 2hf9_A Probable hydrogenase ni 99.5 3.8E-17 1.3E-21 128.7 -5.6 154 27-191 37-224 (226)
200 4a9a_A Ribosome-interacting GT 99.5 1.3E-13 4.6E-18 115.8 14.8 137 25-165 69-222 (376)
201 2www_A Methylmalonic aciduria 99.5 3.9E-15 1.3E-19 124.8 3.9 102 77-190 167-278 (349)
202 3zvr_A Dynamin-1; hydrolase, D 99.5 5.4E-14 1.8E-18 127.4 7.9 157 25-187 48-274 (772)
203 3j25_A Tetracycline resistance 99.5 1.3E-14 4.5E-19 130.5 3.8 114 28-147 2-133 (638)
204 4fn5_A EF-G 1, elongation fact 99.5 9.8E-13 3.4E-17 119.7 16.0 120 24-147 9-151 (709)
205 2p67_A LAO/AO transport system 99.5 6.4E-14 2.2E-18 117.1 6.6 103 77-190 149-260 (341)
206 1yrb_A ATP(GTP)binding protein 99.4 4.3E-13 1.5E-17 107.7 9.6 111 77-190 109-256 (262)
207 2yv5_A YJEQ protein; hydrolase 99.4 9E-13 3.1E-17 108.3 7.9 97 87-186 66-164 (302)
208 2qm8_A GTPase/ATPase; G protei 99.3 1.4E-12 4.8E-17 108.7 6.7 103 77-190 148-260 (337)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 9.7E-11 3.3E-15 99.1 16.2 87 26-112 18-127 (392)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 3.4E-12 1.2E-16 107.8 5.6 88 26-113 20-129 (396)
211 3l82_B F-box only protein 4; T 99.2 1.4E-11 4.8E-16 94.4 4.7 105 85-192 110-224 (227)
212 3l2o_B F-box only protein 4; s 99.0 3.1E-10 1.1E-14 91.1 6.8 107 84-192 194-309 (312)
213 2j37_W Signal recognition part 98.9 8.1E-10 2.8E-14 96.3 3.1 150 26-188 99-310 (504)
214 3h2y_A GTPase family protein; 98.9 6.5E-09 2.2E-13 87.5 8.5 96 86-188 55-157 (368)
215 3ec1_A YQEH GTPase; atnos1, at 98.8 2.6E-10 8.9E-15 96.1 -1.4 139 29-177 163-317 (369)
216 2qag_B Septin-6, protein NEDD5 98.8 7.9E-09 2.7E-13 88.0 7.6 140 28-172 42-217 (427)
217 3h2y_A GTPase family protein; 98.7 2.3E-10 8E-15 96.3 -3.9 134 29-171 161-310 (368)
218 3sop_A Neuronal-specific septi 98.7 1.3E-08 4.3E-13 82.1 5.4 137 28-169 2-178 (270)
219 1tq4_A IIGP1, interferon-induc 98.7 1.3E-07 4.6E-12 80.4 11.8 155 29-189 70-251 (413)
220 1puj_A YLQF, conserved hypothe 98.7 2.7E-08 9.4E-13 80.7 6.6 102 81-192 3-107 (282)
221 3ec1_A YQEH GTPase; atnos1, at 98.7 1.8E-08 6.1E-13 84.9 5.4 97 86-189 57-160 (369)
222 3dm5_A SRP54, signal recogniti 98.5 2.2E-07 7.5E-12 79.5 6.6 90 77-178 183-278 (443)
223 1puj_A YLQF, conserved hypothe 98.5 1.4E-07 4.9E-12 76.4 5.2 58 26-88 118-176 (282)
224 3cnl_A YLQF, putative uncharac 98.4 8.9E-08 3E-12 76.8 2.4 57 29-89 100-156 (262)
225 2v3c_C SRP54, signal recogniti 98.2 4.5E-06 1.6E-10 71.5 8.7 84 77-171 181-272 (432)
226 1f5n_A Interferon-induced guan 98.2 1E-06 3.4E-11 78.2 4.0 65 25-89 35-103 (592)
227 3cnl_A YLQF, putative uncharac 98.1 9.3E-07 3.2E-11 70.9 3.0 91 84-187 4-97 (262)
228 3kl4_A SRP54, signal recogniti 98.1 3.9E-07 1.3E-11 77.9 0.5 90 77-178 180-277 (433)
229 1j8m_F SRP54, signal recogniti 98.1 5E-06 1.7E-10 67.8 5.8 91 77-180 181-280 (297)
230 1t9h_A YLOQ, probable GTPase E 98.0 1.7E-06 5.8E-11 70.8 1.6 89 92-183 78-169 (307)
231 3szr_A Interferon-induced GTP- 98.0 2E-05 6.7E-10 70.5 8.6 26 29-54 46-71 (608)
232 2rcn_A Probable GTPase ENGC; Y 97.8 5E-05 1.7E-09 63.3 7.1 84 97-184 127-212 (358)
233 3e70_C DPA, signal recognition 97.7 2.8E-05 9.6E-10 64.2 4.5 90 79-180 214-309 (328)
234 3q5d_A Atlastin-1; G protein, 97.6 4.3E-05 1.5E-09 65.5 4.7 26 26-51 65-90 (447)
235 1bif_A 6-phosphofructo-2-kinas 97.6 2.6E-06 9E-11 73.9 -3.0 109 27-140 38-156 (469)
236 2xxa_A Signal recognition part 97.3 0.0004 1.4E-08 59.4 6.3 82 77-169 184-272 (433)
237 1ye8_A Protein THEP1, hypothet 97.2 0.00021 7.1E-09 53.6 3.0 23 30-52 2-24 (178)
238 2rcn_A Probable GTPase ENGC; Y 97.1 0.00027 9.3E-09 58.9 3.1 24 30-53 217-240 (358)
239 2yv5_A YJEQ protein; hydrolase 97.1 0.00082 2.8E-08 54.7 5.8 22 30-52 167-188 (302)
240 1t9h_A YLOQ, probable GTPase E 97.0 0.00019 6.5E-09 58.6 1.9 24 29-52 174-197 (307)
241 1kgd_A CASK, peripheral plasma 97.0 0.0003 1E-08 52.7 2.8 22 30-51 7-28 (180)
242 1lvg_A Guanylate kinase, GMP k 97.0 0.00036 1.2E-08 53.2 2.8 22 30-51 6-27 (198)
243 1zp6_A Hypothetical protein AT 96.9 0.00046 1.6E-08 51.9 3.0 22 30-51 11-32 (191)
244 3tr0_A Guanylate kinase, GMP k 96.9 0.00046 1.6E-08 52.4 2.8 22 30-51 9-30 (205)
245 3a00_A Guanylate kinase, GMP k 96.9 0.00047 1.6E-08 51.9 2.7 21 31-51 4-24 (186)
246 4gp7_A Metallophosphoesterase; 96.9 0.00052 1.8E-08 51.0 2.7 20 30-49 11-30 (171)
247 3ney_A 55 kDa erythrocyte memb 96.9 0.00073 2.5E-08 51.5 3.6 22 30-51 21-42 (197)
248 1znw_A Guanylate kinase, GMP k 96.8 0.00058 2E-08 52.3 2.7 23 30-52 22-44 (207)
249 1s96_A Guanylate kinase, GMP k 96.8 0.00064 2.2E-08 52.7 2.8 23 30-52 18-40 (219)
250 1z6g_A Guanylate kinase; struc 96.8 0.00066 2.3E-08 52.5 2.7 24 29-52 24-47 (218)
251 1htw_A HI0065; nucleotide-bind 96.7 0.00078 2.7E-08 49.5 2.7 23 30-52 35-57 (158)
252 3tau_A Guanylate kinase, GMP k 96.7 0.0008 2.7E-08 51.6 2.9 23 30-52 10-32 (208)
253 3c8u_A Fructokinase; YP_612366 96.7 0.00084 2.9E-08 51.4 2.8 26 27-52 21-46 (208)
254 2ffh_A Protein (FFH); SRP54, s 96.7 0.0075 2.6E-07 51.4 8.9 85 77-171 181-271 (425)
255 3tif_A Uncharacterized ABC tra 96.7 0.00092 3.2E-08 52.4 3.0 23 30-52 33-55 (235)
256 1ex7_A Guanylate kinase; subst 96.7 0.001 3.5E-08 50.2 3.0 21 31-51 4-24 (186)
257 3lw7_A Adenylate kinase relate 96.6 0.001 3.5E-08 48.8 2.9 19 30-48 3-21 (179)
258 1kag_A SKI, shikimate kinase I 96.6 0.00097 3.3E-08 49.2 2.8 22 30-51 6-27 (173)
259 3tlx_A Adenylate kinase 2; str 96.6 0.00045 1.6E-08 54.4 0.9 24 27-50 28-51 (243)
260 2pcj_A ABC transporter, lipopr 96.6 0.0011 3.6E-08 51.6 2.9 23 30-52 32-54 (224)
261 2j41_A Guanylate kinase; GMP, 96.6 0.00098 3.4E-08 50.6 2.7 24 29-52 7-30 (207)
262 2bdt_A BH3686; alpha-beta prot 96.6 0.001 3.4E-08 50.0 2.7 21 30-50 4-24 (189)
263 2qor_A Guanylate kinase; phosp 96.6 0.0011 3.9E-08 50.4 3.1 23 29-51 13-35 (204)
264 1ly1_A Polynucleotide kinase; 96.6 0.0013 4.3E-08 48.8 3.0 22 29-50 3-24 (181)
265 3kb2_A SPBC2 prophage-derived 96.6 0.0012 4E-08 48.5 2.8 22 30-51 3-24 (173)
266 2onk_A Molybdate/tungstate ABC 96.6 0.0013 4.3E-08 51.8 3.1 23 30-52 26-48 (240)
267 3asz_A Uridine kinase; cytidin 96.6 0.0012 4.2E-08 50.4 3.0 24 28-51 6-29 (211)
268 4eun_A Thermoresistant glucoki 96.5 0.0012 4E-08 50.2 2.8 22 29-50 30-51 (200)
269 2bbw_A Adenylate kinase 4, AK4 96.5 0.0014 4.8E-08 51.5 3.3 21 29-49 28-48 (246)
270 1sgw_A Putative ABC transporte 96.5 0.0013 4.5E-08 50.8 3.0 23 30-52 37-59 (214)
271 3gfo_A Cobalt import ATP-bindi 96.5 0.0013 4.6E-08 52.7 3.0 23 30-52 36-58 (275)
272 1b0u_A Histidine permease; ABC 96.5 0.0014 4.7E-08 52.3 3.0 23 30-52 34-56 (262)
273 2cbz_A Multidrug resistance-as 96.5 0.0014 4.7E-08 51.5 3.0 23 30-52 33-55 (237)
274 2i3b_A HCR-ntpase, human cance 96.5 0.0014 4.6E-08 49.7 2.7 22 30-51 3-24 (189)
275 4g1u_C Hemin import ATP-bindin 96.5 0.0015 5E-08 52.2 3.1 23 30-52 39-61 (266)
276 1g6h_A High-affinity branched- 96.5 0.0015 5E-08 51.9 3.0 23 30-52 35-57 (257)
277 2pze_A Cystic fibrosis transme 96.5 0.0016 5.4E-08 50.8 3.0 23 30-52 36-58 (229)
278 3ec2_A DNA replication protein 96.4 0.0012 4.1E-08 49.2 2.3 25 28-52 38-62 (180)
279 2olj_A Amino acid ABC transpor 96.4 0.0016 5.4E-08 51.9 3.0 23 30-52 52-74 (263)
280 1mv5_A LMRA, multidrug resista 96.4 0.0017 5.9E-08 51.1 3.2 23 30-52 30-52 (243)
281 2ff7_A Alpha-hemolysin translo 96.4 0.0016 5.4E-08 51.4 3.0 23 30-52 37-59 (247)
282 3fb4_A Adenylate kinase; psych 96.4 0.0017 5.8E-08 49.8 3.1 21 30-50 2-22 (216)
283 1ji0_A ABC transporter; ATP bi 96.4 0.0016 5.5E-08 51.2 3.0 23 30-52 34-56 (240)
284 1vpl_A ABC transporter, ATP-bi 96.4 0.0017 5.7E-08 51.6 3.0 23 30-52 43-65 (256)
285 3dl0_A Adenylate kinase; phosp 96.4 0.0018 6.1E-08 49.7 3.1 21 30-50 2-22 (216)
286 2qi9_C Vitamin B12 import ATP- 96.4 0.0017 5.9E-08 51.3 3.0 23 30-52 28-50 (249)
287 1knq_A Gluconate kinase; ALFA/ 96.4 0.0021 7.3E-08 47.5 3.4 22 29-50 9-30 (175)
288 2d2e_A SUFC protein; ABC-ATPas 96.4 0.0018 6.1E-08 51.2 3.1 22 30-51 31-52 (250)
289 3t61_A Gluconokinase; PSI-biol 96.4 0.0016 5.5E-08 49.4 2.7 23 29-51 19-41 (202)
290 1qhx_A CPT, protein (chloramph 96.4 0.0018 6.3E-08 47.9 2.9 22 30-51 5-26 (178)
291 2eyu_A Twitching motility prot 96.4 0.0016 5.5E-08 51.8 2.8 22 30-51 27-48 (261)
292 2v9p_A Replication protein E1; 96.4 0.0017 5.7E-08 53.0 2.8 22 30-51 128-149 (305)
293 3iij_A Coilin-interacting nucl 96.4 0.0022 7.6E-08 47.6 3.4 23 28-50 11-33 (180)
294 2zu0_C Probable ATP-dependent 96.4 0.0019 6.6E-08 51.6 3.1 22 30-51 48-69 (267)
295 2ghi_A Transport protein; mult 96.4 0.0019 6.3E-08 51.5 3.0 23 30-52 48-70 (260)
296 3co5_A Putative two-component 96.4 0.0069 2.4E-07 43.3 5.8 23 29-51 28-50 (143)
297 1u0l_A Probable GTPase ENGC; p 96.3 0.0022 7.4E-08 52.2 3.4 24 30-53 171-194 (301)
298 2if2_A Dephospho-COA kinase; a 96.3 0.0019 6.4E-08 49.1 2.9 21 30-50 3-23 (204)
299 2ihy_A ABC transporter, ATP-bi 96.3 0.0019 6.6E-08 51.9 3.0 23 30-52 49-71 (279)
300 2ixe_A Antigen peptide transpo 96.3 0.0019 6.6E-08 51.7 3.0 23 30-52 47-69 (271)
301 3vaa_A Shikimate kinase, SK; s 96.3 0.0022 7.7E-08 48.6 3.2 22 29-50 26-47 (199)
302 1jjv_A Dephospho-COA kinase; P 96.3 0.0025 8.4E-08 48.5 3.4 22 29-50 3-24 (206)
303 1nks_A Adenylate kinase; therm 96.3 0.0021 7.2E-08 48.0 3.0 21 30-50 3-23 (194)
304 2nq2_C Hypothetical ABC transp 96.3 0.002 6.8E-08 51.1 3.0 23 30-52 33-55 (253)
305 3lnc_A Guanylate kinase, GMP k 96.3 0.0013 4.3E-08 51.2 1.8 23 29-51 28-51 (231)
306 2ehv_A Hypothetical protein PH 96.3 0.0021 7.2E-08 50.2 3.0 20 30-49 32-51 (251)
307 3umf_A Adenylate kinase; rossm 96.3 0.0031 1.1E-07 48.7 3.9 21 30-50 31-51 (217)
308 2yz2_A Putative ABC transporte 96.3 0.0021 7.1E-08 51.3 3.0 23 30-52 35-57 (266)
309 1y63_A LMAJ004144AAA protein; 96.3 0.0026 8.8E-08 47.6 3.4 24 28-51 10-33 (184)
310 3b85_A Phosphate starvation-in 96.3 0.0013 4.6E-08 50.5 1.7 22 30-51 24-45 (208)
311 2qt1_A Nicotinamide riboside k 96.3 0.0032 1.1E-07 47.9 3.9 24 28-51 21-44 (207)
312 1np6_A Molybdopterin-guanine d 96.3 0.0021 7.3E-08 47.9 2.8 23 29-51 7-29 (174)
313 3cm0_A Adenylate kinase; ATP-b 96.3 0.0028 9.6E-08 47.2 3.5 22 29-50 5-26 (186)
314 1cke_A CK, MSSA, protein (cyti 96.3 0.0022 7.5E-08 49.5 3.0 22 29-50 6-27 (227)
315 3uie_A Adenylyl-sulfate kinase 96.3 0.0021 7.1E-08 48.8 2.7 24 28-51 25-48 (200)
316 2jaq_A Deoxyguanosine kinase; 96.3 0.0025 8.5E-08 48.1 3.1 21 30-50 2-22 (205)
317 1kht_A Adenylate kinase; phosp 96.3 0.0024 8.1E-08 47.7 2.9 22 29-50 4-25 (192)
318 4a74_A DNA repair and recombin 96.2 0.002 6.9E-08 49.6 2.6 22 30-51 27-48 (231)
319 1ukz_A Uridylate kinase; trans 96.2 0.0039 1.3E-07 47.2 4.0 24 27-50 14-37 (203)
320 2rhm_A Putative kinase; P-loop 96.2 0.0029 1E-07 47.3 3.3 22 29-50 6-27 (193)
321 2pjz_A Hypothetical protein ST 96.2 0.0027 9.2E-08 50.6 3.2 23 30-52 32-54 (263)
322 3sr0_A Adenylate kinase; phosp 96.2 0.0028 9.5E-08 48.6 3.2 21 30-50 2-22 (206)
323 3trf_A Shikimate kinase, SK; a 96.2 0.0028 9.4E-08 47.3 3.1 22 29-50 6-27 (185)
324 1uj2_A Uridine-cytidine kinase 96.2 0.0029 1E-07 49.9 3.3 26 25-50 19-44 (252)
325 1aky_A Adenylate kinase; ATP:A 96.2 0.003 1E-07 48.6 3.2 22 29-50 5-26 (220)
326 3aez_A Pantothenate kinase; tr 96.2 0.0033 1.1E-07 51.4 3.6 27 26-52 88-114 (312)
327 1via_A Shikimate kinase; struc 96.2 0.0028 9.7E-08 46.9 2.9 21 30-50 6-26 (175)
328 1tev_A UMP-CMP kinase; ploop, 96.2 0.0033 1.1E-07 47.1 3.3 22 29-50 4-25 (196)
329 1e4v_A Adenylate kinase; trans 96.2 0.0029 1E-07 48.5 3.1 21 30-50 2-22 (214)
330 2cdn_A Adenylate kinase; phosp 96.2 0.0035 1.2E-07 47.5 3.5 23 28-50 20-42 (201)
331 2x8a_A Nuclear valosin-contain 96.1 0.0026 9E-08 51.0 2.7 21 31-51 47-67 (274)
332 2plr_A DTMP kinase, probable t 96.1 0.0035 1.2E-07 47.6 3.3 22 29-50 5-26 (213)
333 1lw7_A Transcriptional regulat 96.1 0.0026 8.8E-08 53.1 2.8 32 21-52 161-194 (365)
334 2f1r_A Molybdopterin-guanine d 96.1 0.0016 5.3E-08 48.5 1.3 23 30-52 4-26 (171)
335 3nh6_A ATP-binding cassette SU 96.1 0.0023 7.8E-08 52.2 2.3 23 30-52 82-104 (306)
336 2kjq_A DNAA-related protein; s 96.1 0.0017 5.9E-08 47.0 1.4 24 29-52 37-60 (149)
337 2jeo_A Uridine-cytidine kinase 96.1 0.0029 9.9E-08 49.7 2.7 24 27-50 24-47 (245)
338 4ido_A Atlastin-1; GTPase, GTP 96.1 0.014 4.7E-07 50.0 7.0 64 25-88 64-151 (457)
339 2wwf_A Thymidilate kinase, put 96.1 0.0046 1.6E-07 47.0 3.8 22 29-50 11-32 (212)
340 2bbs_A Cystic fibrosis transme 96.0 0.0031 1.1E-07 51.0 2.9 23 30-52 66-88 (290)
341 3fvq_A Fe(3+) IONS import ATP- 96.0 0.0032 1.1E-07 52.4 3.0 24 30-53 32-55 (359)
342 1ixz_A ATP-dependent metallopr 96.0 0.0031 1.1E-07 49.6 2.8 22 30-51 51-72 (254)
343 1zd8_A GTP:AMP phosphotransfer 96.0 0.0036 1.2E-07 48.5 3.0 21 29-49 8-28 (227)
344 1gvn_B Zeta; postsegregational 96.0 0.0039 1.3E-07 50.3 3.3 23 28-50 33-55 (287)
345 1zak_A Adenylate kinase; ATP:A 96.0 0.0034 1.2E-07 48.3 2.9 22 29-50 6-27 (222)
346 2pt5_A Shikimate kinase, SK; a 96.0 0.0041 1.4E-07 45.5 3.1 21 30-50 2-22 (168)
347 3jvv_A Twitching mobility prot 96.0 0.0031 1.1E-07 52.5 2.7 22 30-51 125-146 (356)
348 1qf9_A UMP/CMP kinase, protein 96.0 0.005 1.7E-07 45.9 3.7 22 29-50 7-28 (194)
349 1jbk_A CLPB protein; beta barr 96.0 0.0043 1.5E-07 45.9 3.2 23 29-51 44-66 (195)
350 1z47_A CYSA, putative ABC-tran 96.0 0.0038 1.3E-07 52.0 3.1 23 30-52 43-65 (355)
351 3tui_C Methionine import ATP-b 96.0 0.0039 1.3E-07 52.0 3.1 23 30-52 56-78 (366)
352 2v54_A DTMP kinase, thymidylat 96.0 0.0043 1.5E-07 46.9 3.2 23 29-51 5-27 (204)
353 1uf9_A TT1252 protein; P-loop, 96.0 0.0047 1.6E-07 46.6 3.4 24 28-51 8-31 (203)
354 2xb4_A Adenylate kinase; ATP-b 96.0 0.0042 1.4E-07 48.0 3.1 21 30-50 2-22 (223)
355 2yyz_A Sugar ABC transporter, 95.9 0.004 1.4E-07 51.9 3.1 23 30-52 31-53 (359)
356 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0037 1.3E-07 51.5 2.8 23 30-52 173-195 (330)
357 2c95_A Adenylate kinase 1; tra 95.9 0.0041 1.4E-07 46.6 2.9 22 29-50 10-31 (196)
358 2it1_A 362AA long hypothetical 95.9 0.0042 1.4E-07 51.8 3.1 23 30-52 31-53 (362)
359 3rlf_A Maltose/maltodextrin im 95.9 0.0042 1.4E-07 52.1 3.1 23 30-52 31-53 (381)
360 2gza_A Type IV secretion syste 95.9 0.0039 1.4E-07 52.0 2.9 24 29-52 176-199 (361)
361 3tqc_A Pantothenate kinase; bi 95.9 0.0051 1.7E-07 50.4 3.5 26 25-50 89-114 (321)
362 1sq5_A Pantothenate kinase; P- 95.9 0.0038 1.3E-07 50.9 2.7 25 27-51 79-103 (308)
363 1rz3_A Hypothetical protein rb 95.9 0.0052 1.8E-07 46.6 3.3 24 27-50 21-44 (201)
364 1gtv_A TMK, thymidylate kinase 95.9 0.002 6.9E-08 49.2 1.0 21 30-50 2-22 (214)
365 1sxj_E Activator 1 40 kDa subu 95.9 0.019 6.6E-07 47.2 7.0 21 30-50 38-58 (354)
366 2z0h_A DTMP kinase, thymidylat 95.9 0.0045 1.5E-07 46.5 2.9 22 30-51 2-23 (197)
367 1g29_1 MALK, maltose transport 95.9 0.0044 1.5E-07 51.9 3.1 23 30-52 31-53 (372)
368 1odf_A YGR205W, hypothetical 3 95.9 0.0059 2E-07 49.4 3.7 25 26-50 29-53 (290)
369 1v43_A Sugar-binding transport 95.9 0.0046 1.6E-07 51.8 3.1 23 30-52 39-61 (372)
370 1xjc_A MOBB protein homolog; s 95.8 0.0052 1.8E-07 45.5 3.0 23 29-51 5-27 (169)
371 2pbr_A DTMP kinase, thymidylat 95.8 0.0047 1.6E-07 46.2 2.9 21 30-50 2-22 (195)
372 3be4_A Adenylate kinase; malar 95.8 0.0049 1.7E-07 47.4 3.0 22 29-50 6-27 (217)
373 2bwj_A Adenylate kinase 5; pho 95.8 0.005 1.7E-07 46.3 3.0 22 29-50 13-34 (199)
374 1e6c_A Shikimate kinase; phosp 95.8 0.005 1.7E-07 45.2 2.9 21 30-50 4-24 (173)
375 1in4_A RUVB, holliday junction 95.8 0.0042 1.4E-07 51.2 2.7 23 29-51 52-74 (334)
376 1nn5_A Similar to deoxythymidy 95.8 0.0051 1.8E-07 46.8 3.0 23 28-50 9-31 (215)
377 2ewv_A Twitching motility prot 95.8 0.0043 1.5E-07 52.0 2.7 22 30-51 138-159 (372)
378 1iy2_A ATP-dependent metallopr 95.8 0.0046 1.6E-07 49.4 2.8 22 30-51 75-96 (278)
379 2ze6_A Isopentenyl transferase 95.8 0.005 1.7E-07 48.7 2.9 21 30-50 3-23 (253)
380 2iyv_A Shikimate kinase, SK; t 95.8 0.005 1.7E-07 45.8 2.8 21 30-50 4-24 (184)
381 3d31_A Sulfate/molybdate ABC t 95.8 0.0038 1.3E-07 51.8 2.3 23 30-52 28-50 (348)
382 2yvu_A Probable adenylyl-sulfa 95.8 0.0077 2.6E-07 44.9 3.8 24 28-51 13-36 (186)
383 1rj9_A FTSY, signal recognitio 95.8 0.0046 1.6E-07 50.3 2.7 89 79-179 187-287 (304)
384 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0054 1.8E-07 48.6 2.9 22 29-50 5-26 (260)
385 3kta_A Chromosome segregation 95.7 0.0058 2E-07 45.4 3.0 21 30-50 28-48 (182)
386 3b9q_A Chloroplast SRP recepto 95.7 0.0051 1.7E-07 50.0 2.8 82 79-171 186-280 (302)
387 1ak2_A Adenylate kinase isoenz 95.7 0.0064 2.2E-07 47.3 3.3 23 28-50 16-38 (233)
388 1p9r_A General secretion pathw 95.7 0.0049 1.7E-07 52.5 2.7 23 30-52 169-191 (418)
389 2p5t_B PEZT; postsegregational 95.7 0.0042 1.4E-07 49.0 2.2 24 27-50 31-54 (253)
390 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0054 1.8E-07 47.1 2.7 22 30-51 25-46 (235)
391 4e22_A Cytidylate kinase; P-lo 95.7 0.0063 2.2E-07 48.0 3.1 21 29-49 28-48 (252)
392 2oap_1 GSPE-2, type II secreti 95.7 0.0054 1.9E-07 53.6 2.9 23 30-52 262-284 (511)
393 2vp4_A Deoxynucleoside kinase; 95.7 0.0045 1.6E-07 48.1 2.2 25 27-51 19-43 (230)
394 2pez_A Bifunctional 3'-phospho 95.6 0.0065 2.2E-07 45.0 2.9 23 29-51 6-28 (179)
395 3gd7_A Fusion complex of cysti 95.6 0.0059 2E-07 51.4 3.0 23 30-52 49-71 (390)
396 1zuh_A Shikimate kinase; alpha 95.6 0.0072 2.4E-07 44.3 3.1 21 30-50 9-29 (168)
397 2f6r_A COA synthase, bifunctio 95.6 0.0092 3.2E-07 47.9 4.0 24 26-49 73-96 (281)
398 2p65_A Hypothetical protein PF 95.6 0.0052 1.8E-07 45.3 2.3 24 28-51 43-66 (187)
399 2vli_A Antibiotic resistance p 95.6 0.0041 1.4E-07 46.1 1.7 22 29-50 6-27 (183)
400 1lv7_A FTSH; alpha/beta domain 95.6 0.0066 2.2E-07 47.8 3.0 23 29-51 46-68 (257)
401 1oxx_K GLCV, glucose, ABC tran 95.6 0.0038 1.3E-07 52.0 1.5 23 30-52 33-55 (353)
402 1vht_A Dephospho-COA kinase; s 95.6 0.0081 2.8E-07 46.0 3.3 22 29-50 5-26 (218)
403 3bos_A Putative DNA replicatio 95.6 0.0077 2.6E-07 46.4 3.2 24 28-51 52-75 (242)
404 2w58_A DNAI, primosome compone 95.5 0.0071 2.4E-07 45.7 2.9 24 29-52 55-78 (202)
405 1f2t_A RAD50 ABC-ATPase; DNA d 95.4 0.0092 3.2E-07 43.1 3.0 19 31-49 26-44 (149)
406 1cr0_A DNA primase/helicase; R 95.4 0.007 2.4E-07 48.8 2.6 23 30-52 37-59 (296)
407 1tue_A Replication protein E1; 95.4 0.006 2.1E-07 46.6 2.0 21 30-50 60-80 (212)
408 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.049 1.7E-06 45.4 7.8 19 31-49 26-44 (365)
409 2npi_A Protein CLP1; CLP1-PCF1 95.4 0.0068 2.3E-07 52.2 2.6 23 29-51 139-161 (460)
410 3r20_A Cytidylate kinase; stru 95.4 0.0093 3.2E-07 46.6 3.1 23 28-50 9-31 (233)
411 3uc9_A Increased recombination 95.4 0.017 5.8E-07 44.8 4.5 28 25-52 26-53 (233)
412 1m7g_A Adenylylsulfate kinase; 95.4 0.0087 3E-07 45.7 2.9 22 29-50 26-47 (211)
413 4eaq_A DTMP kinase, thymidylat 95.4 0.0094 3.2E-07 46.3 3.1 25 27-51 25-49 (229)
414 1n0w_A DNA repair protein RAD5 95.4 0.0083 2.9E-07 46.5 2.8 22 30-51 26-47 (243)
415 2cvh_A DNA repair and recombin 95.3 0.0083 2.9E-07 45.7 2.7 21 30-50 22-42 (220)
416 4dzz_A Plasmid partitioning pr 95.3 0.029 1E-06 42.2 5.8 85 77-168 76-162 (206)
417 2og2_A Putative signal recogni 95.3 0.0081 2.8E-07 50.0 2.8 82 79-171 243-337 (359)
418 2obl_A ESCN; ATPase, hydrolase 95.3 0.0086 2.9E-07 49.7 2.9 23 30-52 73-95 (347)
419 3nwj_A ATSK2; P loop, shikimat 95.3 0.009 3.1E-07 47.2 2.9 22 29-50 49-70 (250)
420 3n70_A Transport activator; si 95.3 0.01 3.6E-07 42.4 2.9 25 28-52 24-48 (145)
421 1ltq_A Polynucleotide kinase; 95.2 0.0098 3.4E-07 47.9 2.9 22 29-50 3-24 (301)
422 2yhs_A FTSY, cell division pro 95.2 0.0089 3E-07 51.8 2.8 91 78-180 377-479 (503)
423 1svm_A Large T antigen; AAA+ f 95.2 0.0091 3.1E-07 50.1 2.7 22 29-50 170-191 (377)
424 1nij_A Hypothetical protein YJ 95.2 0.0068 2.3E-07 49.6 1.8 24 29-52 5-28 (318)
425 3t15_A Ribulose bisphosphate c 95.1 0.014 4.7E-07 47.1 3.6 24 28-51 36-59 (293)
426 3b9p_A CG5977-PA, isoform A; A 95.1 0.011 3.7E-07 47.5 2.9 24 28-51 54-77 (297)
427 3h4m_A Proteasome-activating n 95.1 0.012 4.1E-07 46.9 3.0 24 28-51 51-74 (285)
428 1yqt_A RNAse L inhibitor; ATP- 95.1 0.013 4.3E-07 51.6 3.3 24 29-52 48-71 (538)
429 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.014 4.7E-07 45.8 3.3 23 28-50 39-61 (262)
430 2grj_A Dephospho-COA kinase; T 95.1 0.016 5.4E-07 43.8 3.4 25 27-51 11-35 (192)
431 1njg_A DNA polymerase III subu 95.1 0.013 4.4E-07 44.9 3.0 21 30-50 47-67 (250)
432 3syl_A Protein CBBX; photosynt 95.0 0.016 5.5E-07 46.7 3.7 24 27-50 66-89 (309)
433 2chg_A Replication factor C sm 95.0 0.013 4.5E-07 44.3 3.0 22 30-51 40-61 (226)
434 3ozx_A RNAse L inhibitor; ATP 95.0 0.012 4.2E-07 51.7 3.0 23 30-52 27-49 (538)
435 3cf0_A Transitional endoplasmi 95.0 0.012 4.1E-07 47.7 2.7 23 29-51 50-72 (301)
436 3gmt_A Adenylate kinase; ssgci 95.0 0.016 5.4E-07 45.1 3.2 23 28-50 8-30 (230)
437 3euj_A Chromosome partition pr 95.0 0.012 4.1E-07 50.9 2.8 21 30-50 31-51 (483)
438 3b60_A Lipid A export ATP-bind 94.9 0.014 4.7E-07 51.9 3.1 23 30-52 371-393 (582)
439 3pfi_A Holliday junction ATP-d 94.9 0.048 1.6E-06 44.6 6.2 23 29-51 56-78 (338)
440 1l8q_A Chromosomal replication 94.9 0.013 4.3E-07 47.9 2.7 24 28-51 37-60 (324)
441 2dpy_A FLII, flagellum-specifi 94.9 0.014 4.7E-07 50.0 2.9 23 30-52 159-181 (438)
442 3j16_B RLI1P; ribosome recycli 94.8 0.019 6.6E-07 51.2 3.8 24 30-53 105-128 (608)
443 1q3t_A Cytidylate kinase; nucl 94.8 0.018 6.1E-07 44.8 3.2 24 27-50 15-38 (236)
444 3b5x_A Lipid A export ATP-bind 94.8 0.016 5.4E-07 51.5 3.2 23 30-52 371-393 (582)
445 1nlf_A Regulatory protein REPA 94.8 0.014 4.8E-07 46.6 2.6 21 30-50 32-52 (279)
446 1d2n_A N-ethylmaleimide-sensit 94.8 0.024 8.2E-07 44.9 4.0 26 26-51 62-87 (272)
447 3ake_A Cytidylate kinase; CMP 94.7 0.018 6.1E-07 43.5 2.9 21 30-50 4-24 (208)
448 3bk7_A ABC transporter ATP-bin 94.7 0.018 6.1E-07 51.4 3.2 23 30-52 119-141 (607)
449 3ozx_A RNAse L inhibitor; ATP 94.6 0.018 6E-07 50.7 3.0 24 30-53 296-319 (538)
450 1sxj_C Activator 1 40 kDa subu 94.6 0.016 5.6E-07 47.6 2.6 22 30-51 48-69 (340)
451 3bk7_A ABC transporter ATP-bin 94.6 0.019 6.4E-07 51.3 3.1 24 30-53 384-407 (607)
452 1yqt_A RNAse L inhibitor; ATP- 94.6 0.02 6.9E-07 50.3 3.3 24 30-53 314-337 (538)
453 2qby_A CDC6 homolog 1, cell di 94.6 0.017 5.7E-07 47.9 2.7 24 28-51 45-68 (386)
454 3zvl_A Bifunctional polynucleo 94.6 0.027 9.4E-07 47.8 4.1 24 28-51 258-281 (416)
455 4b4t_K 26S protease regulatory 94.6 0.017 5.9E-07 49.2 2.8 24 28-51 206-229 (428)
456 2dr3_A UPF0273 protein PH0284; 94.6 0.02 6.7E-07 44.4 3.0 21 30-50 25-45 (247)
457 1ofh_A ATP-dependent HSL prote 94.6 0.02 6.7E-07 46.1 3.0 23 29-51 51-73 (310)
458 4b4t_M 26S protease regulatory 94.5 0.02 6.8E-07 48.9 3.1 24 28-51 215-238 (434)
459 3qks_A DNA double-strand break 94.5 0.023 7.8E-07 43.2 3.0 20 30-49 25-44 (203)
460 3cwq_A Para family chromosome 94.5 0.28 9.6E-06 37.2 9.2 85 77-168 68-153 (209)
461 1fnn_A CDC6P, cell division co 94.5 0.02 6.9E-07 47.5 3.0 23 30-52 46-68 (389)
462 4fcw_A Chaperone protein CLPB; 94.5 0.027 9.3E-07 45.4 3.6 23 29-51 48-70 (311)
463 2qmh_A HPR kinase/phosphorylas 94.5 0.022 7.5E-07 43.3 2.8 24 29-52 35-58 (205)
464 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.022 7.4E-07 46.6 3.0 24 28-51 45-68 (322)
465 3eie_A Vacuolar protein sortin 94.4 0.022 7.4E-07 46.5 3.0 24 28-51 51-74 (322)
466 2yl4_A ATP-binding cassette SU 94.4 0.014 4.9E-07 51.9 2.0 23 30-52 372-394 (595)
467 4a82_A Cystic fibrosis transme 94.4 0.014 4.7E-07 51.9 1.8 23 30-52 369-391 (578)
468 3qf4_B Uncharacterized ABC tra 94.4 0.016 5.3E-07 51.7 2.2 23 30-52 383-405 (598)
469 2px0_A Flagellar biosynthesis 94.4 0.02 6.9E-07 46.3 2.6 85 77-171 183-273 (296)
470 4b4t_L 26S protease subunit RP 94.3 0.025 8.4E-07 48.4 3.1 24 28-51 215-238 (437)
471 3j16_B RLI1P; ribosome recycli 94.3 0.024 8.2E-07 50.6 3.1 23 31-53 381-403 (608)
472 1pzn_A RAD51, DNA repair and r 94.3 0.021 7.2E-07 47.3 2.6 22 30-51 133-154 (349)
473 3qf4_A ABC transporter, ATP-bi 94.3 0.018 6.1E-07 51.2 2.3 23 30-52 371-393 (587)
474 2qgz_A Helicase loader, putati 94.2 0.027 9.3E-07 45.8 3.2 24 28-51 152-175 (308)
475 1c9k_A COBU, adenosylcobinamid 94.2 0.032 1.1E-06 41.6 3.2 21 31-51 2-22 (180)
476 4b4t_J 26S protease regulatory 94.1 0.024 8.3E-07 47.8 2.7 24 28-51 182-205 (405)
477 3crm_A TRNA delta(2)-isopenten 94.1 0.028 9.4E-07 46.1 2.9 21 30-50 7-27 (323)
478 1vma_A Cell division protein F 94.1 0.026 8.8E-07 45.9 2.8 91 77-179 187-289 (306)
479 1sxj_D Activator 1 41 kDa subu 94.1 0.025 8.5E-07 46.4 2.7 22 30-51 60-81 (353)
480 1p5z_B DCK, deoxycytidine kina 94.1 0.02 6.9E-07 45.3 2.1 25 27-51 23-47 (263)
481 2r62_A Cell division protease 94.1 0.011 3.8E-07 46.7 0.5 22 30-51 46-67 (268)
482 2ga8_A Hypothetical 39.9 kDa p 94.0 0.031 1.1E-06 46.3 3.1 23 28-50 24-46 (359)
483 3d3q_A TRNA delta(2)-isopenten 94.0 0.03 1E-06 46.2 3.0 22 29-50 8-29 (340)
484 2ocp_A DGK, deoxyguanosine kin 94.0 0.036 1.2E-06 43.2 3.4 23 29-51 3-25 (241)
485 3uk6_A RUVB-like 2; hexameric 94.0 0.029 9.9E-07 46.4 3.0 23 29-51 71-93 (368)
486 3u61_B DNA polymerase accessor 94.0 0.28 9.7E-06 39.6 8.9 22 30-51 49-71 (324)
487 3ea0_A ATPase, para family; al 94.0 0.46 1.6E-05 36.5 9.8 86 77-170 119-204 (245)
488 2v1u_A Cell division control p 94.0 0.025 8.5E-07 46.9 2.5 24 28-51 44-67 (387)
489 3te6_A Regulatory protein SIR3 94.0 0.024 8.4E-07 46.3 2.4 25 27-51 44-68 (318)
490 3hws_A ATP-dependent CLP prote 93.9 0.046 1.6E-06 45.3 4.0 25 27-51 50-74 (363)
491 2r44_A Uncharacterized protein 93.9 0.023 7.8E-07 46.4 2.1 21 30-50 48-68 (331)
492 2z4s_A Chromosomal replication 93.9 0.028 9.6E-07 48.1 2.7 24 28-51 130-153 (440)
493 2dhr_A FTSH; AAA+ protein, hex 93.9 0.028 9.6E-07 48.9 2.7 22 30-51 66-87 (499)
494 2qp9_X Vacuolar protein sortin 93.8 0.033 1.1E-06 46.2 3.0 24 28-51 84-107 (355)
495 4b4t_I 26S protease regulatory 93.8 0.031 1.1E-06 47.5 2.7 24 28-51 216-239 (437)
496 2bjv_A PSP operon transcriptio 93.8 0.036 1.2E-06 43.7 2.9 24 29-52 30-53 (265)
497 1um8_A ATP-dependent CLP prote 93.7 0.034 1.2E-06 46.3 2.9 24 28-51 72-95 (376)
498 3end_A Light-independent proto 93.7 0.74 2.5E-05 36.9 10.8 84 77-169 157-242 (307)
499 3d8b_A Fidgetin-like protein 1 93.7 0.037 1.3E-06 45.9 3.1 24 28-51 117-140 (357)
500 2ce7_A Cell division protein F 93.7 0.032 1.1E-06 48.2 2.8 22 30-51 51-72 (476)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.4e-40 Score=259.69 Aligned_cols=167 Identities=38% Similarity=0.686 Sum_probs=146.5
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
+.+||+|+|++|+|||||+++|+.+.+...+.+|++.++..+.+.+++..+.+.||||+|+++|..++..+++.+|++|+
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++.++++.++++|++|||++|.||+++|+.|+
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence 99999999999999999999888778899999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 026548 187 QEIYGAV 193 (237)
Q Consensus 187 ~~i~~~~ 193 (237)
+.+....
T Consensus 172 ~~i~~~~ 178 (216)
T 4dkx_A 172 AALPGME 178 (216)
T ss_dssp HHC----
T ss_pred HHHHhhh
Confidence 8876543
No 2
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-36 Score=235.81 Aligned_cols=177 Identities=60% Similarity=0.970 Sum_probs=148.9
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 34678999999999999999999999999888888888888888888899988899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
+|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||+++.|++++|+
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887666899999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccc
Q 026548 184 RLLQEIYGAVSKKELEC 200 (237)
Q Consensus 184 ~l~~~i~~~~~~~~~~~ 200 (237)
+|++.+.++..+.+...
T Consensus 169 ~l~~~i~~~~~~~~~~~ 185 (223)
T 3cpj_B 169 ELINTIYQKVSKHQMDL 185 (223)
T ss_dssp HHHHHHTTCC-------
T ss_pred HHHHHHHHHhhhcccCc
Confidence 99999998887766544
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.5e-34 Score=224.41 Aligned_cols=174 Identities=46% Similarity=0.801 Sum_probs=160.3
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45689999999999999999999999998888888988888888889999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
|+|||++++.++..+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877678999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccc
Q 026548 185 LLQEIYGAVSKKEL 198 (237)
Q Consensus 185 l~~~i~~~~~~~~~ 198 (237)
|.+.+.+.......
T Consensus 165 l~~~i~~~~~~~~~ 178 (206)
T 2bcg_Y 165 MARQIKESMSQQNL 178 (206)
T ss_dssp HHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhhccc
Confidence 99999888765543
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=223.99 Aligned_cols=168 Identities=35% Similarity=0.546 Sum_probs=150.9
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++|
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4578999999999999999999999988777777766554 456778888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
+|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++..++++++++||++|.|++++|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887654 58999999999999877778889999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 026548 185 LLQEIYGAVS 194 (237)
Q Consensus 185 l~~~i~~~~~ 194 (237)
|++.+.++..
T Consensus 171 l~~~i~~~~~ 180 (206)
T 2bov_A 171 LMREIRARKM 180 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHccc
Confidence 9999987643
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=216.40 Aligned_cols=174 Identities=45% Similarity=0.782 Sum_probs=160.2
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 34467899999999999999999999999988888899999999999999998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..++..+++..++++++++||+++.|++++|
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 170 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988877789999999999998888888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 026548 183 FRLLQEIYGAVSKK 196 (237)
Q Consensus 183 ~~l~~~i~~~~~~~ 196 (237)
++|.+.+.++....
T Consensus 171 ~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 171 MTMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHhccc
Confidence 99999998876644
No 6
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2.2e-33 Score=216.20 Aligned_cols=177 Identities=44% Similarity=0.739 Sum_probs=160.0
Q ss_pred cccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhh
Q 026548 18 ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAY 97 (237)
Q Consensus 18 ~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 97 (237)
....+...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+
T Consensus 12 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 91 (189)
T 2gf9_A 12 SGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY 91 (189)
T ss_dssp --CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGG
T ss_pred cCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHh
Confidence 34555667789999999999999999999999999888778888888888888888888999999999999999999999
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN 177 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 177 (237)
++.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++..++++++++||++|.|
T Consensus 92 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 92 YRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171 (189)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999999999999999999999998887666899999999999987777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 026548 178 VDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 178 i~~~~~~l~~~i~~~~~ 194 (237)
++++|++|.+.+.+++.
T Consensus 172 i~~l~~~l~~~i~~~~~ 188 (189)
T 2gf9_A 172 VKQVFERLVDVICEKMN 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999887653
No 7
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=217.13 Aligned_cols=177 Identities=56% Similarity=0.912 Sum_probs=159.5
Q ss_pred ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548 19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYY 98 (237)
Q Consensus 19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 98 (237)
.+.....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||.+.+..++..++
T Consensus 16 ~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 95 (193)
T 2oil_A 16 PRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYY 95 (193)
T ss_dssp ----CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHh
Confidence 34446677889999999999999999999999998888888888888888888898889999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
+.+|++|+|||++++.++..+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||+++.|+
T Consensus 96 ~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 96 RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNV 175 (193)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999999988776678999999999999877778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 026548 179 DTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 179 ~~~~~~l~~~i~~~~~~ 195 (237)
+++|++|.+.+.++..+
T Consensus 176 ~~l~~~l~~~i~~~~~~ 192 (193)
T 2oil_A 176 ELAFETVLKEIFAKVSK 192 (193)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999887654
No 8
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-33 Score=219.92 Aligned_cols=174 Identities=41% Similarity=0.728 Sum_probs=158.9
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
...+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 45677899999999999999999999999988888899999998889999998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...++++++|||++|.|++++|
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 180 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988766789999999999998777888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 026548 183 FRLLQEIYGAVSKK 196 (237)
Q Consensus 183 ~~l~~~i~~~~~~~ 196 (237)
++|++.+.++....
T Consensus 181 ~~l~~~i~~~~~~~ 194 (201)
T 2ew1_A 181 LDLACRLISEARQN 194 (201)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998876543
No 9
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.2e-33 Score=216.62 Aligned_cols=177 Identities=48% Similarity=0.810 Sum_probs=157.3
Q ss_pred ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548 19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYY 98 (237)
Q Consensus 19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 98 (237)
...+....+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..++
T Consensus 12 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 91 (191)
T 2a5j_A 12 SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY 91 (191)
T ss_dssp CCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHh
Confidence 34445667789999999999999999999999998887778888888888888999889999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
+.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||+++.|+
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV 171 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999999998876678999999999999877788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 026548 179 DTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 179 ~~~~~~l~~~i~~~~~~ 195 (237)
+++|++|++.+.++..+
T Consensus 172 ~~l~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 172 EEAFINTAKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 10
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.4e-34 Score=219.38 Aligned_cols=173 Identities=46% Similarity=0.807 Sum_probs=129.4
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 45689999999999999999999999888777778888888888888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++.+++..++++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876668999999999999877778889999999999999999999999999999999
Q ss_pred HHHHHHHhhhccc
Q 026548 185 LLQEIYGAVSKKE 197 (237)
Q Consensus 185 l~~~i~~~~~~~~ 197 (237)
|.+.+.++..+..
T Consensus 165 l~~~i~~~~~~~~ 177 (183)
T 2fu5_C 165 LARDIKAKMDKNW 177 (183)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHhhccc
Confidence 9999988776543
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=219.52 Aligned_cols=174 Identities=45% Similarity=0.739 Sum_probs=148.2
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR 99 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 99 (237)
..+...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++
T Consensus 21 ~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 100 (201)
T 2hup_A 21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR 100 (201)
T ss_dssp -----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred CcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence 34456678899999999999999999999999988777788888888888889998899999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNV 178 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 178 (237)
.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...++ ++++|||+++.|+
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 999999999999999999999999998887667899999999999987777888999999999999 8999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 026548 179 DTAFFRLLQEIYGAV 193 (237)
Q Consensus 179 ~~~~~~l~~~i~~~~ 193 (237)
+++|++|++.+.++.
T Consensus 181 ~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 181 EEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987654
No 12
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.8e-33 Score=214.65 Aligned_cols=174 Identities=45% Similarity=0.787 Sum_probs=160.1
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 45678999999999999999999999999888888888888888888899988899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
+|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||+++.|++++|+
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999998887667899999999999987777888899999999999999999999999999999
Q ss_pred HHHHHHHHhhhccc
Q 026548 184 RLLQEIYGAVSKKE 197 (237)
Q Consensus 184 ~l~~~i~~~~~~~~ 197 (237)
++.+.+.++....+
T Consensus 166 ~l~~~~~~~~~~~~ 179 (186)
T 2bme_A 166 QCARKILNKIESGE 179 (186)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhhcC
Confidence 99999998876544
No 13
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.9e-33 Score=211.64 Aligned_cols=169 Identities=51% Similarity=0.883 Sum_probs=154.8
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 45567899999999999999999999999988778888888888888889998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++..++++++++||+++.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999888776789999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 026548 183 FRLLQEIYG 191 (237)
Q Consensus 183 ~~l~~~i~~ 191 (237)
++|++.+.+
T Consensus 170 ~~l~~~i~~ 178 (179)
T 1z0f_A 170 LEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999988754
No 14
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=216.95 Aligned_cols=175 Identities=41% Similarity=0.743 Sum_probs=149.2
Q ss_pred cccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhh
Q 026548 18 ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAY 97 (237)
Q Consensus 18 ~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 97 (237)
....+.+.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+
T Consensus 16 ~~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 95 (192)
T 2il1_A 16 PRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95 (192)
T ss_dssp ------CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHH
T ss_pred CCCCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHH
Confidence 34455677789999999999999999999999999888888888888888889999988999999999999999999999
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-CCeEEEEcCCCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-GLFFSEASALNGD 176 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 176 (237)
++.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+++..+++.+++... +++++++||++|.
T Consensus 96 ~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 999999999999999999999999999988877678999999999999877788888888998885 7899999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 026548 177 NVDTAFFRLLQEIYGA 192 (237)
Q Consensus 177 gi~~~~~~l~~~i~~~ 192 (237)
|++++|++|.+.+.++
T Consensus 176 gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 176 NVDEIFLKLVDDILKK 191 (192)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988765
No 15
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=217.95 Aligned_cols=178 Identities=46% Similarity=0.764 Sum_probs=149.1
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR 99 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 99 (237)
......+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 96 (200)
T 2o52_A 17 RGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 96 (200)
T ss_dssp -----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence 34455678899999999999999999999999988888888888888888889998899999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...++++++|||++|.|++
T Consensus 97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 97 GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 176 (200)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999999887766789999999999998777788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccc
Q 026548 180 TAFFRLLQEIYGAVSKKE 197 (237)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~ 197 (237)
++|++|++.+.++....+
T Consensus 177 ~l~~~l~~~i~~~~~~~~ 194 (200)
T 2o52_A 177 EAFLKCARTILNKIDSGE 194 (200)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999988776543
No 16
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=214.48 Aligned_cols=173 Identities=42% Similarity=0.732 Sum_probs=159.2
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 34578999999999999999999999999888888888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
+|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++..++++++++||++|.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999998887666899999999999987778888899999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc
Q 026548 184 RLLQEIYGAVSKK 196 (237)
Q Consensus 184 ~l~~~i~~~~~~~ 196 (237)
+|.+.+.+++...
T Consensus 164 ~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 164 RLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999998887654
No 17
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=209.39 Aligned_cols=171 Identities=45% Similarity=0.729 Sum_probs=154.9
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 44578999999999999999999999999888888999999998999999988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
+|+|||++++.++..+..|+..+.... .++|++||+||+|+...+.+..++..+++...+++++++||++|.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999987765 5799999999999988778888899999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 026548 184 RLLQEIYGAVSK 195 (237)
Q Consensus 184 ~l~~~i~~~~~~ 195 (237)
+|.+.+.+....
T Consensus 164 ~l~~~~~~~~~~ 175 (181)
T 3tw8_B 164 CITELVLRAKKD 175 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999998876654
No 18
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.6e-32 Score=209.41 Aligned_cols=169 Identities=41% Similarity=0.746 Sum_probs=152.8
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34567999999999999999999999999888888888888888888899888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
+|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||++|.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999987778888899999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 026548 184 RLLQEIYGA 192 (237)
Q Consensus 184 ~l~~~i~~~ 192 (237)
+|.+.+.+.
T Consensus 168 ~l~~~~~~~ 176 (181)
T 2efe_B 168 EIARRLPRV 176 (181)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhc
Confidence 998876543
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=6e-33 Score=209.61 Aligned_cols=167 Identities=38% Similarity=0.671 Sum_probs=145.7
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999998887888888888888888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999887765567999999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHH
Q 026548 185 LLQEIYG 191 (237)
Q Consensus 185 l~~~i~~ 191 (237)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 20
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.4e-32 Score=209.00 Aligned_cols=169 Identities=32% Similarity=0.484 Sum_probs=152.4
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3445689999999999999999999999988888888877666 677788998889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCC-CCCCHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL-NGDNVDT 180 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~ 180 (237)
++|+|||++++.+++.+..|+..+..... .++|++||+||+|+.+.+.+..+++.+++..++++++++||+ ++.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 99999999999999999999998866433 689999999999998888889999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHh
Q 026548 181 AFFRLLQEIYGA 192 (237)
Q Consensus 181 ~~~~l~~~i~~~ 192 (237)
+|++|.+.+.++
T Consensus 172 l~~~l~~~i~~q 183 (183)
T 3kkq_A 172 TFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 999999988753
No 21
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.9e-32 Score=210.99 Aligned_cols=177 Identities=40% Similarity=0.668 Sum_probs=155.8
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEE-EEEEEECCE---------EEEEEEEeCCCcch
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQ-TRTVTINGK---------IIKAQIWDTAGQER 89 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~ 89 (237)
|.....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++. .+.+.||||||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 33445677899999999999999999999999888777788888777 556666654 67899999999999
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEE
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFS 168 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 168 (237)
+...+..+++.+|++|+|||++++.++..+..|+..+..... .++|++||+||+|+...+.+..+++.+++...+++++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999999999887765 6899999999999987777888899999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 026548 169 EASALNGDNVDTAFFRLLQEIYGAVSKK 196 (237)
Q Consensus 169 ~~Sa~~~~gi~~~~~~l~~~i~~~~~~~ 196 (237)
++||+++.|++++|++|.+.+.++..+.
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999998876643
No 22
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.4e-32 Score=207.29 Aligned_cols=164 Identities=45% Similarity=0.746 Sum_probs=151.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 35789999999999999999999999988888888888888888888988899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999888766789999999999998777788889999999999999999999999999999999
Q ss_pred HHHH
Q 026548 186 LQEI 189 (237)
Q Consensus 186 ~~~i 189 (237)
.+.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8765
No 23
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.8e-34 Score=219.20 Aligned_cols=173 Identities=42% Similarity=0.721 Sum_probs=157.9
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
+...+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 34567789999999999999999999999988777777878888888888877778899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 181 (237)
|++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+....++...++..++++++++||++|.|++++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999998877678999999999999887888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 026548 182 FFRLLQEIYGAVS 194 (237)
Q Consensus 182 ~~~l~~~i~~~~~ 194 (237)
|++|++.+.++..
T Consensus 177 ~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 177 FERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987765
No 24
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.2e-33 Score=216.83 Aligned_cols=177 Identities=27% Similarity=0.408 Sum_probs=145.5
Q ss_pred cccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhh
Q 026548 18 ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAY 97 (237)
Q Consensus 18 ~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 97 (237)
......+....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+
T Consensus 14 ~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 92 (201)
T 3oes_A 14 LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSF 92 (201)
T ss_dssp ---------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGG
T ss_pred CCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHH
Confidence 344445667789999999999999999999999998888878877666 5566666777889999999999999999999
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD 176 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (237)
++.+|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++..++++++++||++|.
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (201)
T 3oes_A 93 IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQ 172 (201)
T ss_dssp TTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHH
T ss_pred HhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 9999999999999999999999999999877643 579999999999998888888899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhc
Q 026548 177 NVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 177 gi~~~~~~l~~~i~~~~~~ 195 (237)
|++++|++|.+.+.+....
T Consensus 173 ~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 173 LTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhhhhh
Confidence 9999999999998776543
No 25
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=213.47 Aligned_cols=174 Identities=24% Similarity=0.290 Sum_probs=146.5
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-hhHhhh
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-VTSAYY 98 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~ 98 (237)
+.+......++|+|+|++|+|||||+++|.+........++.+.++....+.+++..+.+.+|||+|++.+.. ++..++
T Consensus 15 ~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~ 94 (195)
T 3cbq_A 15 YFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCL 94 (195)
T ss_dssp -------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHH
T ss_pred cCCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhh
Confidence 3445566789999999999999999999986654444445666667777788899999999999999988765 778889
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN 177 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 177 (237)
+.+|++|+|||++++.++..+..|+..+..... .++|++||+||+|+...+.+..+++.+++..+++++++|||+++.|
T Consensus 95 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 174 (195)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCC
Confidence 999999999999999999999999999877654 5799999999999987778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 026548 178 VDTAFFRLLQEIYGAV 193 (237)
Q Consensus 178 i~~~~~~l~~~i~~~~ 193 (237)
++++|++|++.+.++.
T Consensus 175 v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 175 TRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999886543
No 26
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.2e-32 Score=207.74 Aligned_cols=167 Identities=45% Similarity=0.823 Sum_probs=145.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999887777888888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
|||++++.+++.+..|+..+......++|+++|+||+|+ ..+....++..+++...+++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999988877678999999999999 4456678888999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 026548 187 QEIYGAVS 194 (237)
Q Consensus 187 ~~i~~~~~ 194 (237)
+.+.++..
T Consensus 161 ~~~~~~~~ 168 (170)
T 1g16_A 161 KLIQEKID 168 (170)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHhh
Confidence 99887643
No 27
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=8.4e-33 Score=215.62 Aligned_cols=172 Identities=32% Similarity=0.601 Sum_probs=151.8
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 34578999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-HcCCeEEEEcCCCCCCHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-DQGLFFSEASALNGDNVD 179 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~ 179 (237)
|+|||++++.++..+..|+..+..... .++|++||+||+|+. .+....+++.+++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999998876543 478999999999997 45667788888887 667899999999999999
Q ss_pred HHHHHHHHHHHHhhhccc
Q 026548 180 TAFFRLLQEIYGAVSKKE 197 (237)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~ 197 (237)
++|++|.+.+.++....+
T Consensus 164 ~l~~~l~~~~~~~~~~~~ 181 (207)
T 1vg8_A 164 QAFQTIARNALKQETEVE 181 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccc
Confidence 999999999988766443
No 28
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-32 Score=206.72 Aligned_cols=163 Identities=45% Similarity=0.748 Sum_probs=149.8
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 36899999999999999999999999888888888888888888899988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---cCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM---RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
|||++++.+++.+..|+..+......++|+++|+||+|+... +++..++..+++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988876678999999999998765 56778889999999999999999999999999999
Q ss_pred HHHHHH
Q 026548 184 RLLQEI 189 (237)
Q Consensus 184 ~l~~~i 189 (237)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 988765
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-32 Score=207.18 Aligned_cols=170 Identities=41% Similarity=0.711 Sum_probs=145.4
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
..+..++|+|+|++|+|||||+++|.+..+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 34568999999999999999999999988753 56688888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..++..+++...+++++++||+++.|++++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999888766789999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 026548 183 FRLLQEIYGAV 193 (237)
Q Consensus 183 ~~l~~~i~~~~ 193 (237)
++|.+.+.++.
T Consensus 166 ~~l~~~~~~~~ 176 (180)
T 2g6b_A 166 TAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99999886543
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=6.5e-32 Score=203.76 Aligned_cols=164 Identities=42% Similarity=0.705 Sum_probs=152.0
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
.+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||.+.+...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999999988888888888888888889998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|||++++.+++.+..|+..+.......+|+++|+||+|+...+++..++..+++...+++++++||+++.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988766789999999999998777788889999999999999999999999999999999
Q ss_pred HHHH
Q 026548 186 LQEI 189 (237)
Q Consensus 186 ~~~i 189 (237)
.+.+
T Consensus 164 ~~~i 167 (170)
T 1z0j_A 164 SRRI 167 (170)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8765
No 31
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.1e-32 Score=208.11 Aligned_cols=168 Identities=30% Similarity=0.407 Sum_probs=150.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4578999999999999999999998888888888887776 677788998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
+|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++..++++++++||+++.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999998876654 57999999999999888888999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 026548 185 LLQEIYGAVS 194 (237)
Q Consensus 185 l~~~i~~~~~ 194 (237)
|++.+.+...
T Consensus 163 l~~~~~~~~~ 172 (181)
T 3t5g_A 163 IILEAEKMDG 172 (181)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHhcC
Confidence 9998876643
No 32
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=212.90 Aligned_cols=172 Identities=41% Similarity=0.661 Sum_probs=152.2
Q ss_pred ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548 19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYY 98 (237)
Q Consensus 19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 98 (237)
..++...+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..++
T Consensus 14 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 93 (192)
T 2fg5_A 14 LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYY 93 (192)
T ss_dssp -------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHH
T ss_pred cccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhh
Confidence 34455667889999999999999999999999998877888888888888888887788999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
+.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...++++++|||+++.|+
T Consensus 94 ~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 94 RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINI 173 (192)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSH
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence 99999999999999999999999999998876668999999999999876778888999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 026548 179 DTAFFRLLQEIY 190 (237)
Q Consensus 179 ~~~~~~l~~~i~ 190 (237)
+++|++|.+.+.
T Consensus 174 ~~l~~~l~~~i~ 185 (192)
T 2fg5_A 174 EELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987664
No 33
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.2e-32 Score=205.97 Aligned_cols=165 Identities=38% Similarity=0.615 Sum_probs=151.6
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45789999999999999999999999888888888888888888889998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999887765 579999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHH
Q 026548 186 LQEIYG 191 (237)
Q Consensus 186 ~~~i~~ 191 (237)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998865
No 34
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=9.4e-32 Score=204.89 Aligned_cols=170 Identities=31% Similarity=0.470 Sum_probs=151.3
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
+....++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3456799999999999999999999999888777788776665 667788888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAH-ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
+++|||++++.++..+..|+..+... ...++|++||+||+|+...+.+..+++.+++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999999999999988544 34689999999999998777888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 026548 183 FRLLQEIYGAVS 194 (237)
Q Consensus 183 ~~l~~~i~~~~~ 194 (237)
++|.+.+.+...
T Consensus 164 ~~l~~~~~~~~~ 175 (181)
T 2fn4_A 164 EQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc
Confidence 999998876543
No 35
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.1e-32 Score=216.88 Aligned_cols=178 Identities=39% Similarity=0.663 Sum_probs=153.1
Q ss_pred cccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE----------EEEEEEEeCCCc
Q 026548 18 ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK----------IIKAQIWDTAGQ 87 (237)
Q Consensus 18 ~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~ 87 (237)
.+......++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+.||||||+
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 15 VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94 (217)
T ss_dssp ------CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred CcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence 3445566788999999999999999999999999887666677777777777777665 688999999999
Q ss_pred chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe
Q 026548 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF 166 (237)
Q Consensus 88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 166 (237)
+.+...+..+++.+|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++...+++
T Consensus 95 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 174 (217)
T 2f7s_A 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP 174 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC
T ss_pred HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999888765543 57999999999999877778888999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548 167 FSEASALNGDNVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 167 ~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~ 195 (237)
+++|||+++.|++++|++|.+.+.++...
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999887654
No 36
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=4.3e-32 Score=204.81 Aligned_cols=165 Identities=25% Similarity=0.314 Sum_probs=135.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-hhHhhhcCCcEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-VTSAYYRGALGAVV 106 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~il 106 (237)
.+||+|+|++|+|||||+++|.+......+.++.+.+.....+.+++..+.+.+|||||++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998887776666677778888888999999999999999998876 67778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..++..+++...+++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999887664 479999999999998778889999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 026548 186 LQEIYGA 192 (237)
Q Consensus 186 ~~~i~~~ 192 (237)
++.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
No 37
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=9.8e-32 Score=203.85 Aligned_cols=167 Identities=28% Similarity=0.364 Sum_probs=137.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch--hchhhHhhhcCCcEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--YRAVTSAYYRGALGA 104 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~~ 104 (237)
..++|+|+|++|+|||||+++|.+..+...+ ++.+.++....+.+++..+.+.+|||||++. +..+...+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 4689999999999999999999998876554 4556667777888899888999999999887 566777888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
++|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..++...++..+++++++|||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 999999999999999999998877532 5799999999999987778888888899999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 026548 184 RLLQEIYGAVS 194 (237)
Q Consensus 184 ~l~~~i~~~~~ 194 (237)
+|.+.+.++..
T Consensus 162 ~l~~~~~~~~~ 172 (175)
T 2nzj_A 162 GVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhc
Confidence 99998876543
No 38
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-32 Score=209.02 Aligned_cols=167 Identities=27% Similarity=0.422 Sum_probs=143.3
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
......+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.||||||++.+..+ ..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3445679999999999999999999999998887878877665 456777888899999999999988875 67899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC-CCCCCH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA-LNGDNV 178 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi 178 (237)
++|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++..+++++++||| +++.|+
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 99999999999999999999999877632 57999999999999877788899999999999999999999 899999
Q ss_pred HHHHHHHHHHHHH
Q 026548 179 DTAFFRLLQEIYG 191 (237)
Q Consensus 179 ~~~~~~l~~~i~~ 191 (237)
+++|+.|++.+.+
T Consensus 174 ~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 174 QHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 39
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=212.57 Aligned_cols=170 Identities=36% Similarity=0.646 Sum_probs=139.9
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
.......++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 34556689999999999999999999999988777778888888888888999889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC------CCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV------DMRAVSAEDAVEFAEDQGLFFSEASALNG 175 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (237)
|++|+|||++++.+++.+..|+..+......++|++||+||+|+. ..+.+..+++.+++...++++++|||++|
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g 181 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence 999999999999999999999999887766689999999999986 34567788899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQEIYG 191 (237)
Q Consensus 176 ~gi~~~~~~l~~~i~~ 191 (237)
.|++++|.+|++.+.+
T Consensus 182 ~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 182 SNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
No 40
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-31 Score=210.03 Aligned_cols=172 Identities=43% Similarity=0.804 Sum_probs=153.8
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
.....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34567999999999999999999999999888888888888888888999988899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
+|+|||++++.+++.+..|+..+......++|++||+||+|+ ..+....++..+++..++++++++||+++.|++++|+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999988876668999999999999 4456778888899999999999999999999999999
Q ss_pred HHHHHHHHhhhcc
Q 026548 184 RLLQEIYGAVSKK 196 (237)
Q Consensus 184 ~l~~~i~~~~~~~ 196 (237)
+|.+.+.++....
T Consensus 175 ~l~~~~~~~~~~~ 187 (213)
T 3cph_A 175 TLAKLIQEKIDSN 187 (213)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhh
Confidence 9999998877543
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.7e-31 Score=203.03 Aligned_cols=167 Identities=34% Similarity=0.644 Sum_probs=147.2
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 34679999999999999999999999998888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-HcCCeEEEEcCCCCCCHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-DQGLFFSEASALNGDNVD 179 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~ 179 (237)
++|||++++.+++.+..|+..+..... .++|+++|+||+|+. .+....+++.+++. ..+++++++||++|.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999999876653 578999999999987 45677888888888 567889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 026548 180 TAFFRLLQEIYGA 192 (237)
Q Consensus 180 ~~~~~l~~~i~~~ 192 (237)
++|++|++.++++
T Consensus 163 ~l~~~l~~~~~~~ 175 (177)
T 1wms_A 163 AAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 42
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=7.8e-32 Score=207.53 Aligned_cols=168 Identities=40% Similarity=0.679 Sum_probs=148.5
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-hhhHhhhcCCc
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-AVTSAYYRGAL 102 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d 102 (237)
.....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+. .++..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34467999999999999999999999999888888888888888888899988999999999999998 88899999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC---CCH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG---DNV 178 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi 178 (237)
++|+|||++++.+++.+..|+..+.... ..++|++||+||+|+...+++..++..+++...+++++++||+++ .|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 9999999999999999999999988775 368999999999999877788888999999999999999999999 999
Q ss_pred HHHHHHHHHHHHH
Q 026548 179 DTAFFRLLQEIYG 191 (237)
Q Consensus 179 ~~~~~~l~~~i~~ 191 (237)
+++|++|++.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (189)
T 1z06_A 176 EAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 43
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=6e-32 Score=205.62 Aligned_cols=164 Identities=38% Similarity=0.693 Sum_probs=151.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999999888888898888888889999988899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
|||++++.++..+..|+..+......++|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++|.
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999998876656899999999999987778888889999999999999999999999999999988
Q ss_pred HHHH
Q 026548 187 QEIY 190 (237)
Q Consensus 187 ~~i~ 190 (237)
+.+.
T Consensus 173 ~~~~ 176 (179)
T 2y8e_A 173 AALP 176 (179)
T ss_dssp HTCC
T ss_pred HHHh
Confidence 7654
No 44
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.4e-31 Score=206.33 Aligned_cols=167 Identities=40% Similarity=0.680 Sum_probs=149.1
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEE----------------------------
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI---------------------------- 76 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 76 (237)
.+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3457899999999999999999999999888888888888887777777655
Q ss_pred ---------EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 77 ---------IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 77 ---------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
+.+.||||||++.+...+..+++.+|++|+|||++++.+++.+..|+..+.... +.|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence 789999999999999999999999999999999999999999999999988765 499999999999 55
Q ss_pred CcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~ 194 (237)
.+....+++.+++...+++++++||+++.|++++|++|.+.+.++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 56778889999999999999999999999999999999999987754
No 45
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.8e-31 Score=205.00 Aligned_cols=166 Identities=18% Similarity=0.284 Sum_probs=143.9
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
.......+||+|+|++|+|||||+++|+++.+...+.++. . .....+.+++..+.+.||||+|++.+. +++.+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-G-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-E-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-c-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 3455668999999999999999999999999887776663 3 334778889999999999999998877 77889
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCC
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLV--DMRAVSAEDAVEFAEDQG-LFFSEASALNGDN 177 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 177 (237)
|++++|||++++.+++.+..|+..+..... .++|++||+||+|+. ..+.+..+++.+++..++ ++|++|||++|.|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999999999999987754 579999999999984 456788899999999997 8999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 026548 178 VDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 178 i~~~~~~l~~~i~~~~~ 194 (237)
++++|++|++.+.++..
T Consensus 167 v~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 167 VERVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999887643
No 46
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.2e-32 Score=214.26 Aligned_cols=168 Identities=31% Similarity=0.546 Sum_probs=142.9
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4579999999999999999999999988777777776554 455667887889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--------CCHHHHHHHHHHcCC-eEEEEcCCCC
Q 026548 106 VVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMRA--------VSAEDAVEFAEDQGL-FFSEASALNG 175 (237)
Q Consensus 106 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 175 (237)
+|||++++.+++.+. .|+..+.... .++|++||+||+|+...+. +..+++.+++..+++ ++++|||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999986 7999888765 4799999999999865433 367888899999996 8999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhc
Q 026548 176 DNVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 176 ~gi~~~~~~l~~~i~~~~~~ 195 (237)
.|++++|++|++.+.+...+
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp TTHHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHHhhhhhh
Confidence 99999999999998776443
No 47
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=3.2e-32 Score=207.24 Aligned_cols=167 Identities=34% Similarity=0.563 Sum_probs=147.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC-EEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-KIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
.+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 3578999999999999999999999887766667877788888888876 678899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHAD--SSIR-IILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 181 (237)
|+|||++++.+++.+..|+..+..... .+.| ++||+||+|+.+.+.+..+++.+++...+++++++||++|.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 999999999999999999988876432 2445 8999999999877778888999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 026548 182 FFRLLQEIYGA 192 (237)
Q Consensus 182 ~~~l~~~i~~~ 192 (237)
|++|.+.+.+.
T Consensus 164 ~~~l~~~~~~~ 174 (178)
T 2hxs_A 164 FQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhh
Confidence 99999887654
No 48
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=4.3e-32 Score=213.37 Aligned_cols=171 Identities=23% Similarity=0.415 Sum_probs=145.8
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
+......+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.||||+|++.+..++..+++.+
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 34445679999999999999999999999998888888887766 35566677778999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eE
Q 026548 102 LGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FF 167 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~ 167 (237)
|++|+|||++++.++.. +..|+..+.... .++|++||+||+|+... +.+..+++.+++..+++ +|
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 178 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence 99999999999999998 789999988876 58999999999999753 67889999999999999 89
Q ss_pred EEEcCCCCCC-HHHHHHHHHHHHHHhhh
Q 026548 168 SEASALNGDN-VDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 168 ~~~Sa~~~~g-i~~~~~~l~~~i~~~~~ 194 (237)
++|||++|.| ++++|+++++.+.++..
T Consensus 179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 179 LEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred EEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 9999999998 99999999998876654
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-31 Score=204.25 Aligned_cols=169 Identities=40% Similarity=0.719 Sum_probs=152.8
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 33457999999999999999999999999888888888888888888999998999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
+|+|||++++.++..+..|+..+..... .++|++||+||+|+. .+.+..+++.+++...+++++++||+++.|++++|
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 9999999999999999999998877653 579999999999984 35667888999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 026548 183 FRLLQEIYGAV 193 (237)
Q Consensus 183 ~~l~~~i~~~~ 193 (237)
++|.+.+.+..
T Consensus 170 ~~l~~~~~~~~ 180 (195)
T 1x3s_A 170 EELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHTSG
T ss_pred HHHHHHHHhhh
Confidence 99999987654
No 50
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2e-31 Score=200.36 Aligned_cols=164 Identities=35% Similarity=0.573 Sum_probs=144.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 368999999999999999999999988777767766554 3556778888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+++..+++.+++..++++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999999877664 589999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHH
Q 026548 186 LQEIYG 191 (237)
Q Consensus 186 ~~~i~~ 191 (237)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998864
No 51
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=2.4e-31 Score=200.17 Aligned_cols=163 Identities=28% Similarity=0.372 Sum_probs=124.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.+||+|+|++|+|||||+++|.+....... ++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 579999999999999999999977754332 4444444 45667889999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 999999999999999999877543 6799999999999988888899999999999999999999999999999999999
Q ss_pred HHHHHh
Q 026548 187 QEIYGA 192 (237)
Q Consensus 187 ~~i~~~ 192 (237)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988764
No 52
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.8e-31 Score=200.76 Aligned_cols=162 Identities=31% Similarity=0.506 Sum_probs=144.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.++|+|+|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999887777777765543 5566677788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++..+ +++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 999999999999999988877543 68999999999999877778888999999988 7899999999999999999999
Q ss_pred HHHHH
Q 026548 186 LQEIY 190 (237)
Q Consensus 186 ~~~i~ 190 (237)
.+.+.
T Consensus 162 ~~~i~ 166 (167)
T 1c1y_A 162 VRQIN 166 (167)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88763
No 53
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=5.7e-31 Score=201.57 Aligned_cols=167 Identities=35% Similarity=0.552 Sum_probs=148.9
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++|
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 3579999999999999999999999988777767766554 455677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
+|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++..++++++++||+++.|++++|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999999877664 58999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 026548 185 LLQEIYGAV 193 (237)
Q Consensus 185 l~~~i~~~~ 193 (237)
|.+.+.++.
T Consensus 175 l~~~i~~~~ 183 (187)
T 2a9k_A 175 LMREIRARK 183 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987654
No 54
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=3.2e-31 Score=199.07 Aligned_cols=163 Identities=28% Similarity=0.454 Sum_probs=146.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.++|+|+|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 5899999999999999999999998877776766544 366777888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
||++++.+++.+..|+..+..... .+.|+++|+||+|+...+++..++..+++...+++++++||++|.|++++|++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 999999999999999998877654 6799999999999987778888889999999999999999999999999999999
Q ss_pred HHHHH
Q 026548 187 QEIYG 191 (237)
Q Consensus 187 ~~i~~ 191 (237)
+.+.+
T Consensus 162 ~~~~~ 166 (167)
T 1kao_A 162 RQMNY 166 (167)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88753
No 55
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=5.6e-31 Score=203.54 Aligned_cols=168 Identities=25% Similarity=0.448 Sum_probs=148.4
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
.....+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 4456899999999999999999999999987777788776655 467788888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC--cCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHH
Q 026548 104 AVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM--RAVSAEDAVEFAEDQGLF-FSEASALNGDNVD 179 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 179 (237)
+|+|||++++.++..+ ..|+..+.... .++|++||+||+|+... +.+..+++.+++..+++. ++++||++|.|++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 9999999999999997 77888887664 57999999999998753 677889999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 026548 180 TAFFRLLQEIYGAV 193 (237)
Q Consensus 180 ~~~~~l~~~i~~~~ 193 (237)
++|++|++.+.++.
T Consensus 177 ~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 177 EVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887653
No 56
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-31 Score=204.49 Aligned_cols=169 Identities=31% Similarity=0.491 Sum_probs=148.3
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
.....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++. ...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 345679999999999999999999999998877777777554 45577788889999999999988 7778889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC-CHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTA 181 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~ 181 (237)
+|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++..+++++++|||++|. |++++
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 9999999999999999999998877643 689999999999998777888899999999999999999999999 99999
Q ss_pred HHHHHHHHHHhhh
Q 026548 182 FFRLLQEIYGAVS 194 (237)
Q Consensus 182 ~~~l~~~i~~~~~ 194 (237)
|++|++.+.++..
T Consensus 182 ~~~l~~~i~~~~~ 194 (196)
T 2atv_A 182 FYELCREVRRRRM 194 (196)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcc
Confidence 9999999876543
No 57
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-31 Score=204.00 Aligned_cols=171 Identities=29% Similarity=0.457 Sum_probs=148.1
Q ss_pred ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548 19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYY 98 (237)
Q Consensus 19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 98 (237)
.|........++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++
T Consensus 9 ~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 87 (194)
T 2atx_A 9 SMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87 (194)
T ss_dssp CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred ccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhc
Confidence 34445556789999999999999999999999988777777776554 45566777778899999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC
Q 026548 99 RGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL 165 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~ 165 (237)
+.+|++|+|||++++.++..+. .|+..+.... .++|++||+||+|+... +.+..+++.+++..+++
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 166 (194)
T 2atx_A 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA 166 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence 9999999999999999999987 7988888765 47999999999999753 46778889999999997
Q ss_pred -eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548 166 -FFSEASALNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 166 -~~~~~Sa~~~~gi~~~~~~l~~~i~~ 191 (237)
++++|||++|.|++++|++|++.++.
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999988763
No 58
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=5.9e-31 Score=204.41 Aligned_cols=171 Identities=27% Similarity=0.431 Sum_probs=139.7
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
+......++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 34556689999999999999999999999987777777776444 45677888888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcCC-eE
Q 026548 102 LGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGL-FF 167 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~ 167 (237)
|++|+|||++++.++..+. .|+..+.... .++|++||+||+|+.. .+.+..+++..++..+++ ++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999986 7998888765 4899999999999865 256778889999999887 89
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548 168 SEASALNGDNVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 168 ~~~Sa~~~~gi~~~~~~l~~~i~~~~~ 194 (237)
++|||++|.|++++|++|++.+++...
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999999876643
No 59
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.4e-31 Score=206.58 Aligned_cols=170 Identities=27% Similarity=0.331 Sum_probs=140.8
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCC--cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch-hchhhHhhhc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEF--FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER-YRAVTSAYYR 99 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~ 99 (237)
......+||+|+|++|+|||||+++|++... ...+ ++++.++..+.+.+++..+.+.+|||+|.+. +..+...+++
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~ 110 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 110 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence 3445679999999999999999999997543 2322 4466667777888899999999999999877 4556667788
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
.+|++|+|||+++..+++.+..|+..+.... ..++|++||+||+|+...+.+..++...++..+++++++|||++|.||
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 190 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999999998877643 257999999999999877778888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 026548 179 DTAFFRLLQEIYGAV 193 (237)
Q Consensus 179 ~~~~~~l~~~i~~~~ 193 (237)
+++|++|++.+..+.
T Consensus 191 ~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 191 KELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999886544
No 60
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.98 E-value=1.7e-31 Score=203.59 Aligned_cols=169 Identities=36% Similarity=0.632 Sum_probs=135.3
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3457899999999999999999999999888888888888887777776 556789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC-CcCCCHHHHHHHHH-HcCCeEEEEcCCCCCC
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVD-MRAVSAEDAVEFAE-DQGLFFSEASALNGDN 177 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g 177 (237)
+|+|||++++.+++.+..|+..+..... .++|++||+||+|+.. .+.+..+++.+++. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999998877643 5799999999999954 34567888888888 4668899999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 026548 178 VDTAFFRLLQEIYGAV 193 (237)
Q Consensus 178 i~~~~~~l~~~i~~~~ 193 (237)
++++|++|.+.+.++.
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 165 VDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988764
No 61
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.98 E-value=1.9e-30 Score=199.11 Aligned_cols=168 Identities=33% Similarity=0.549 Sum_probs=146.0
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..++|+|+|++|+|||||+++|.+..+...+.++.. +.....+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 468999999999999999999999988777766664 4455677788988899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
|||++++.+++.+..|+..+..... .++|++||+||+|+.. .....+.+.+++..++++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887654 6899999999999873 4567888999999999999999999999999999999
Q ss_pred HHHHHHhhhcc
Q 026548 186 LQEIYGAVSKK 196 (237)
Q Consensus 186 ~~~i~~~~~~~ 196 (237)
.+.+.+.....
T Consensus 161 ~~~~~~~~~~~ 171 (189)
T 4dsu_A 161 VREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhc
Confidence 99988776543
No 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.98 E-value=7.3e-31 Score=199.90 Aligned_cols=164 Identities=21% Similarity=0.323 Sum_probs=139.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...+||+|+|++|+|||||+++|.+..+.. +.++.+.. ....+.+++..+.+.+|||||++. ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 356899999999999999999999998876 55666644 356777888889999999999876 45788899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCC--CCcCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLV--DMRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVD 179 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~ 179 (237)
+|||++++.+++.+..|+..+..... .++|++||+||+|+. ..+.+..+++.+++... ++++++|||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 99999999999999998776655432 579999999999984 45677888899998876 6889999999999999
Q ss_pred HHHHHHHHHHHHhhhcc
Q 026548 180 TAFFRLLQEIYGAVSKK 196 (237)
Q Consensus 180 ~~~~~l~~~i~~~~~~~ 196 (237)
++|+++++.+.+.....
T Consensus 158 ~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999998776543
No 63
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.98 E-value=4.5e-32 Score=211.39 Aligned_cols=170 Identities=31% Similarity=0.518 Sum_probs=115.1
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC--CCcCCCCCCcceeEEEEEEEECCE--EEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFFFDSKSTIGVEFQTRTVTINGK--IIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
...++|+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.||||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999998 777677778777777778888876 78899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCC-CcCCCHHHHHHHHHHcCCeEEEEcCCC-CC
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVD-MRAVSAEDAVEFAEDQGLFFSEASALN-GD 176 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 176 (237)
|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+.. .+.+..+++.+++..+++++++|||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 5899999999999987 677888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHhhhc
Q 026548 177 NVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 177 gi~~~~~~l~~~i~~~~~~ 195 (237)
|++++|++|.+.+.+...+
T Consensus 178 gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYED 196 (208)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999998877654
No 64
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=3.6e-31 Score=205.03 Aligned_cols=164 Identities=26% Similarity=0.362 Sum_probs=142.2
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.||||||++.+..++..+++.+|++|+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 4689999999999999999999998887777677664443 456678888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
|||++++.+++.+..|+..+..... .++|++||+||+|+.. +....+++..++..++++++++||++|.|++++|++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999999888887766543 4789999999999875 556778888999999999999999999999999999
Q ss_pred HHHHHHHh
Q 026548 185 LLQEIYGA 192 (237)
Q Consensus 185 l~~~i~~~ 192 (237)
|.+.+.++
T Consensus 165 l~~~~~~~ 172 (199)
T 2gf0_A 165 LLTLETRR 172 (199)
T ss_dssp HHHHCSSS
T ss_pred HHHHHhhh
Confidence 98876543
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=5.9e-31 Score=201.84 Aligned_cols=165 Identities=27% Similarity=0.470 Sum_probs=143.4
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 34578999999999999999999999988877777776655 34566777788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcC-CeEEEE
Q 026548 105 VVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQG-LFFSEA 170 (237)
Q Consensus 105 ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 170 (237)
|+|||++++.+++.+ ..|+..+.... .++|++||+||+|+... +.+..+++.+++..++ ++|++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 78988887765 57999999999999742 5677888999999988 689999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHH
Q 026548 171 SAL-NGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 171 Sa~-~~~gi~~~~~~l~~~i~~ 191 (237)
||+ ++.|++++|+.+++.+++
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 998 689999999999998764
No 66
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=7.5e-31 Score=205.02 Aligned_cols=167 Identities=27% Similarity=0.465 Sum_probs=143.7
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 3456689999999999999999999999998877778877665 345666777789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcC-CeEE
Q 026548 103 GAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQG-LFFS 168 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~ 168 (237)
++|+|||++++.+++.+ ..|+..+.... .++|++||+||+|+... +.+..+++.+++..++ ++++
T Consensus 102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 180 (205)
T 1gwn_A 102 AVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI 180 (205)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE
Confidence 99999999999999998 78998887765 57999999999998642 4677888999999888 6899
Q ss_pred EEcCC-CCCCHHHHHHHHHHHHHH
Q 026548 169 EASAL-NGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 169 ~~Sa~-~~~gi~~~~~~l~~~i~~ 191 (237)
+|||+ ++.|++++|+.|++.+++
T Consensus 181 e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 181 ECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHHHHhh
Confidence 99998 689999999999998875
No 67
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=4.5e-30 Score=199.74 Aligned_cols=165 Identities=26% Similarity=0.430 Sum_probs=145.4
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
....+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 346799999999999999999999999988777787776665 3467788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEE
Q 026548 105 VVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEA 170 (237)
Q Consensus 105 ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 170 (237)
|+|||++++.+++.+ ..|+..+.... .++|++||+||+|+... +.+..+++.+++...+. ++++|
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999998 67888877755 47999999999998764 45778889999999998 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q 026548 171 SALNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 171 Sa~~~~gi~~~~~~l~~~i~~ 191 (237)
||++|.|++++|++|.+.+++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=7.8e-30 Score=196.28 Aligned_cols=168 Identities=33% Similarity=0.520 Sum_probs=136.0
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
.-..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 34569999999999999999999999888777666665443 45677788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 183 (237)
++|||+++..++..+..|+..+..... .++|++||+||+|+.. +....+++.+++...+++++++||+++.|++++|+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998877654 5799999999999875 55678889999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 026548 184 RLLQEIYGAVS 194 (237)
Q Consensus 184 ~l~~~i~~~~~ 194 (237)
+|.+.+.+...
T Consensus 176 ~l~~~~~~~~~ 186 (190)
T 3con_A 176 TLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=9.6e-30 Score=190.66 Aligned_cols=162 Identities=33% Similarity=0.587 Sum_probs=142.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 107 (237)
.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 47999999999999999999999887777666665443 56677788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
||+++..++..+..|+..+..... .++|+++|+||+|+.. +....++..+++...+++++++||+++.|++++|++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877654 4799999999999876 45677889999999999999999999999999999999
Q ss_pred HHHHH
Q 026548 187 QEIYG 191 (237)
Q Consensus 187 ~~i~~ 191 (237)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88754
No 70
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=2.9e-30 Score=197.58 Aligned_cols=164 Identities=30% Similarity=0.511 Sum_probs=143.7
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 468999999999999999999999888777777765444 4566788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEcC
Q 026548 107 VYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEASA 172 (237)
Q Consensus 107 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa 172 (237)
|||++++.++..+. .|+..+.... .++|++||+||+|+... +.+..++..+++...++ ++++|||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999987 7888887765 38999999999998653 46678888999999997 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q 026548 173 LNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 173 ~~~~gi~~~~~~l~~~i~~~ 192 (237)
++|.|++++|+++.+.+++.
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCC
T ss_pred CCccCHHHHHHHHHHHHhcc
Confidence 99999999999999887643
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=202.35 Aligned_cols=166 Identities=29% Similarity=0.473 Sum_probs=125.1
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.||||||++.+..++..+++.+|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3479999999999999999999999988777767765443 456778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEc
Q 026548 106 VVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEAS 171 (237)
Q Consensus 106 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 171 (237)
+|||++++.+++.+. .|+..+.... .++|++||+||+|+... +.+..+++.+++..+++ ++++||
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 7988887765 57999999999998764 25677888999999997 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhh
Q 026548 172 ALNGDNVDTAFFRLLQEIYGAV 193 (237)
Q Consensus 172 a~~~~gi~~~~~~l~~~i~~~~ 193 (237)
|++|.|++++|++|++.+++..
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887653
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.3e-30 Score=193.97 Aligned_cols=162 Identities=30% Similarity=0.391 Sum_probs=141.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 3589999999999999999999998887777677665543 456678888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999999888776542 47999999999999877778888888999999999999999999999999999
Q ss_pred HHHHH
Q 026548 185 LLQEI 189 (237)
Q Consensus 185 l~~~i 189 (237)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 88754
No 73
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.4e-33 Score=216.40 Aligned_cols=170 Identities=46% Similarity=0.800 Sum_probs=143.4
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
...+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 34467899999999999999999999998887777778888888888999998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++..++++++++||+++.|++++|
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999987766789999999999998776666677888999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 026548 183 FRLLQEIYGA 192 (237)
Q Consensus 183 ~~l~~~i~~~ 192 (237)
++|.+.+.++
T Consensus 188 ~~l~~~l~~~ 197 (199)
T 3l0i_B 188 MTMAAEIKKR 197 (199)
T ss_dssp HHHTTTTTTT
T ss_pred HHHHHHHHHh
Confidence 9998876554
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=1.9e-30 Score=204.06 Aligned_cols=169 Identities=30% Similarity=0.523 Sum_probs=146.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
...+||+|+|.+|+|||||+++|++..+...+.++.+.......+... +..+.+.||||||++.+..++..++..+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 457999999999999999999999988877767777776666665553 4447899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 184 (237)
|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+...+++...++++++|||++|.|++++|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999998877667999999999999877778888888999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 026548 185 LLQEIYGAVS 194 (237)
Q Consensus 185 l~~~i~~~~~ 194 (237)
|.+.+.+...
T Consensus 169 l~~~~~~~~~ 178 (218)
T 4djt_A 169 LARIFTGRPD 178 (218)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHhcccc
Confidence 9998876654
No 75
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-29 Score=198.42 Aligned_cols=165 Identities=27% Similarity=0.422 Sum_probs=139.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.||||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 35689999999999999999999999988777777766654 34677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEc
Q 026548 106 VVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEAS 171 (237)
Q Consensus 106 lv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 171 (237)
+|||++++.++..+ ..|+..+.... .++|++||+||+|+... +.+..++..+++...++ ++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67888887754 57999999999998654 45678888899999998 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHh
Q 026548 172 ALNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 172 a~~~~gi~~~~~~l~~~i~~~ 192 (237)
|++|.|++++|++|.+.++++
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=1.6e-29 Score=195.51 Aligned_cols=166 Identities=28% Similarity=0.355 Sum_probs=137.5
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCC--CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch-hchhhHhhhcCCcE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNE--FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER-YRAVTSAYYRGALG 103 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ 103 (237)
..+||+|+|++|+|||||+++|++.. +...+ ++++.++....+.+++..+.+.+|||+|.+. +..+...+++.+|+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 46899999999999999999999643 23322 3455666677788899999999999999776 55567778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548 104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
+++|||+++..+++.+..|+..+..... .++|+++|+||+|+...+.+..++...++..+++++++|||++|.||+++|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence 9999999999999999999988776533 579999999999998767788888888888899999999999999999999
Q ss_pred HHHHHHHHHhh
Q 026548 183 FRLLQEIYGAV 193 (237)
Q Consensus 183 ~~l~~~i~~~~ 193 (237)
+++++.+....
T Consensus 164 ~~l~~~~~~~~ 174 (192)
T 2cjw_A 164 EGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999886554
No 77
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=4.6e-30 Score=198.77 Aligned_cols=170 Identities=19% Similarity=0.302 Sum_probs=130.6
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYY 98 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 98 (237)
..+.+.....+|+|+|.+|+|||||+++|++..+.. .+.++.+... ..+...+ +.+.||||||++.+..++..++
T Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~ 84 (199)
T 4bas_A 9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYY 84 (199)
T ss_dssp -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGC
T ss_pred ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHH
Confidence 344566778999999999999999999999999887 6777777443 3444444 6788999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCcCCCHHHHHHH------HHHcC
Q 026548 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHAD--------SSIRIILIGNKSDLVDMRAVSAEDAVEF------AEDQG 164 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~vvv~nK~D~~~~~~~~~~~~~~~------~~~~~ 164 (237)
+.+|++|+|||++++.++..+..|+..+..... .++|++||+||+|+.... ..++..+. +...+
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHP 162 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSC
T ss_pred hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCe
Confidence 999999999999999999999999888765421 279999999999997642 22222221 13467
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548 165 LFFSEASALNGDNVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 165 ~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~ 195 (237)
+++++|||++|.|++++|++|++.+.++..+
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 163 FVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred eEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999998877544
No 78
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=6.8e-29 Score=192.78 Aligned_cols=171 Identities=63% Similarity=1.017 Sum_probs=152.0
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999999988888888888888888999999899999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
+|||+++..++..+..|+..+......+.|+++++||+|+.+.+....++++.++...++.++++|++++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999998889888776655678999999999998777778888999999999999999999999999999999
Q ss_pred HHHHHHhhhcc
Q 026548 186 LQEIYGAVSKK 196 (237)
Q Consensus 186 ~~~i~~~~~~~ 196 (237)
.+.+.+.....
T Consensus 163 ~~~~~~~~~~~ 173 (199)
T 2f9l_A 163 LTEIYRIVSQK 173 (199)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhhc
Confidence 99998766433
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=2.7e-30 Score=203.78 Aligned_cols=171 Identities=29% Similarity=0.528 Sum_probs=150.5
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
.......+||+|+|.+|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34555689999999999999999999887777777778888888888888999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 181 (237)
|++|+|||++++.++..+..|+..+.... .++|++||+||+|+.+... .++...++...++++++|||++|.|++++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998876 4799999999999975432 22566788888999999999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 026548 182 FFRLLQEIYGAVSK 195 (237)
Q Consensus 182 ~~~l~~~i~~~~~~ 195 (237)
|++|.+.+......
T Consensus 166 ~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 166 FLWLARKLIGDPNL 179 (221)
T ss_dssp HHHHHHHHHTCTTC
T ss_pred HHHHHHHHHhCccc
Confidence 99999998776543
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=2.2e-30 Score=200.01 Aligned_cols=168 Identities=22% Similarity=0.258 Sum_probs=136.3
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-----------CCCcceeEEEEEE-EECCEEEEEEEEeCCCcchhc
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-----------KSTIGVEFQTRTV-TINGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~ 91 (237)
.....+||+|+|++|+|||||++.+.+.. ...+ .++.+.++....+ .+++..+.+.||||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 44668999999999999999997766543 3332 2343334333333 456677899999999999999
Q ss_pred hhhHhhhcCCcEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC
Q 026548 92 AVTSAYYRGALGAVVVYDIT------KRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL 165 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 165 (237)
.++..+++.+|++|+|||++ +..++..+..|+..+.. ...++|++||+||+|+.. ....+++.+++...++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence 99999999999999999999 56777788888887632 236899999999999976 4778899999999999
Q ss_pred -eEEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548 166 -FFSEASALNGDNVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 166 -~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~ 195 (237)
+++++||++|.|++++|++|++.+.++...
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999887653
No 81
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=8.4e-31 Score=200.04 Aligned_cols=163 Identities=31% Similarity=0.537 Sum_probs=126.6
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 34689999999999999999999998877666666554332 23445666778889999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcC----------CCHHHHHHHHHHcCC-eEEEEcCC
Q 026548 106 VVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMRA----------VSAEDAVEFAEDQGL-FFSEASAL 173 (237)
Q Consensus 106 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 173 (237)
+|||++++.+++.+. .|+..+.... .++|++||+||+|+.+.+. +..+++.+++..+++ ++++|||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999987 7988888765 4799999999999865433 467788899999996 89999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 026548 174 NGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~i~ 190 (237)
+|.|++++|++|++.++
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=1.1e-29 Score=198.10 Aligned_cols=163 Identities=29% Similarity=0.494 Sum_probs=138.7
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
....+||+|+|.+|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 34579999999999999999999999988777766664 44455667788888899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHcCC-eEEEE
Q 026548 105 VVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQGL-FFSEA 170 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 170 (237)
|+|||++++.+++.+. .|+..+.... .++|++||+||+|+.... .+..+++..++...++ ++++|
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999986 7888888776 689999999999986543 3678888899999986 59999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 026548 171 SALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 171 Sa~~~~gi~~~~~~l~~~i 189 (237)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 83
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=4.1e-28 Score=187.34 Aligned_cols=168 Identities=63% Similarity=1.023 Sum_probs=151.5
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 34556789999999999999999999999998888889999999889999999988899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA 181 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 181 (237)
+++++|||+.+..+++.+..|+..+......+.|+++++||+|+.+.+....+.++.++...++.++++|++++.+++++
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999998888988877655567899999999999876777888899999999999999999999999999
Q ss_pred HHHHHHHH
Q 026548 182 FFRLLQEI 189 (237)
Q Consensus 182 ~~~l~~~i 189 (237)
|+.|.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=1.3e-28 Score=189.42 Aligned_cols=166 Identities=21% Similarity=0.404 Sum_probs=130.2
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR 99 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 99 (237)
..+......++|+|+|++|+|||||+++|.+..+...+.++.+..+. .+...+ +.+.||||||++.+..++..+++
T Consensus 14 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~ 89 (188)
T 1zd9_A 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCR 89 (188)
T ss_dssp -----CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHT
T ss_pred ccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHc
Confidence 34445566899999999999999999999999887777777776654 344454 67889999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCC
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASAL 173 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 173 (237)
.+|++|+|||++++.++..+..|+..+..... .++|++||+||+|+... ...++..+... ..++++++|||+
T Consensus 90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 167 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCK 167 (188)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECC
Confidence 99999999999999999999999888766432 57999999999999753 22333322211 234579999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 026548 174 NGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~i~~ 191 (237)
+|.|++++|++|.+.+.+
T Consensus 168 ~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 168 EKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TCTTHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999886643
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=3.1e-28 Score=186.72 Aligned_cols=161 Identities=24% Similarity=0.411 Sum_probs=130.8
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|.+.. ...+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 457899999999999999999999888 55566776633 44555665 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVD 179 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 179 (237)
+|||++++.+++.+..|+..+..... .++|+++|+||+|+... ...++..+... ..++++++|||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 99999999999999999888766432 57999999999999763 33444433322 245679999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 026548 180 TAFFRLLQEIYGAV 193 (237)
Q Consensus 180 ~~~~~l~~~i~~~~ 193 (237)
++|++|.+.+.+++
T Consensus 169 ~l~~~l~~~i~~~~ 182 (186)
T 1ksh_A 169 PGIDWLLDDISSRV 182 (186)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887653
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=187.94 Aligned_cols=162 Identities=23% Similarity=0.366 Sum_probs=130.4
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCC-CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNE-FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
......++|+|+|.+|+|||||+++|.+.. +...+.++.+ +....+.+++ +.+.||||||++.+...+..+++.+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 344557999999999999999999999887 4555556655 4445566665 6788999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCC
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASAL 173 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 173 (237)
|++|+|||++++.++..+..|+..+..... .++|++||+||+|+.. ....+++.+++. ..++++++|||+
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCC
Confidence 999999999999999999999988776543 4799999999999975 345566666553 235689999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 026548 174 NGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~i~ 190 (237)
+|.|++++|++|.+.+.
T Consensus 170 ~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTBTHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999988764
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=1.9e-29 Score=189.34 Aligned_cols=156 Identities=21% Similarity=0.397 Sum_probs=122.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 108 (237)
+||+|+|++|+|||||+++|.++.+.. +.++.+. ....+...+ +.+.+|||||++.+..++..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888654 4466553 333444444 67899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHH
Q 026548 109 DITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~ 182 (237)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+... ..++++++|||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999999988876542 257999999999999653 22333322211 234579999999999999999
Q ss_pred HHHHHHHHH
Q 026548 183 FRLLQEIYG 191 (237)
Q Consensus 183 ~~l~~~i~~ 191 (237)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999887654
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=1.5e-28 Score=185.60 Aligned_cols=158 Identities=22% Similarity=0.346 Sum_probs=127.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..++|+|+|++|+|||||+++|.++.+.. +.++.+. ....+.+++ +.+.+|||||++.+...+..+++.+|++|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 46899999999999999999999888753 4455553 345566665 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHH-----HHHcCCeEEEEcCCCCCCHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEF-----AEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
|||++++.++..+..|+..+..... .++|++||+||+|+.... ..++..+. +...+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 9999999999999888888765432 579999999999997632 22333222 223456899999999999999
Q ss_pred HHHHHHHHHHH
Q 026548 181 AFFRLLQEIYG 191 (237)
Q Consensus 181 ~~~~l~~~i~~ 191 (237)
+|++|.+.+.+
T Consensus 159 l~~~l~~~i~~ 169 (171)
T 1upt_A 159 AMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=2.3e-28 Score=189.76 Aligned_cols=155 Identities=21% Similarity=0.260 Sum_probs=122.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..++|+++|++|+|||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+|||||++.+..++..+++.+|++|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 3579999999999999999999988764 344555443 35566777 678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----------------cCCeEE
Q 026548 107 VYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----------------QGLFFS 168 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 168 (237)
|||++++.++..+..|+..+.... ..++|+++|+||+|+.. .+..+++.+++.. .+++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 999999999999999998876643 25799999999999975 5667777776653 345799
Q ss_pred EEcCCCCCCHHHHHHHHHHH
Q 026548 169 EASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 169 ~~Sa~~~~gi~~~~~~l~~~ 188 (237)
+|||++|.|++++|++|.+.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998754
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=5.7e-28 Score=186.33 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=128.0
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
..++|+++|++|+|||||+++|.+..+.. +.++.+. ....+.+++ +.+.+|||||++.+...+..+++.+|++|+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 35799999999999999999999988653 4455554 345667777 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH------------cCCeEEEEcCC
Q 026548 107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED------------QGLFFSEASAL 173 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~ 173 (237)
|||++++.+++.+..|+..+..... .++|+++|+||+|+.. ....+++.+.+.. .++++++|||+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 9999999999999999988765432 5799999999999975 5566666665442 34679999999
Q ss_pred CCCCHHHHHHHHHHH
Q 026548 174 NGDNVDTAFFRLLQE 188 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~ 188 (237)
+|.|++++|++|.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999998753
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=1.9e-28 Score=187.36 Aligned_cols=160 Identities=24% Similarity=0.412 Sum_probs=125.5
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 101 (237)
+......++|+|+|.+|+|||||+++|.+..+ ..+.++.+... ..+.+++ +.+.+|||||++.+...+..+++.+
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 34555679999999999999999999999887 33445555433 4455566 6788999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCC
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNG 175 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 175 (237)
|++|+|||++++.+++.+..|+..+.... ..++|++||+||+|+.. ....+++.+... ..++++++|||++|
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 99999999999999999999988876643 25799999999999965 334444444332 23457999999999
Q ss_pred CCHHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQE 188 (237)
Q Consensus 176 ~gi~~~~~~l~~~ 188 (237)
.|++++|++|++.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999998764
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.1e-28 Score=185.83 Aligned_cols=160 Identities=24% Similarity=0.429 Sum_probs=125.8
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 34689999999999999999999988876 444555533 34455666 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVD 179 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 179 (237)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. ....+++.+... ..++++++|||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 99999999999999999988876532 5799999999999975 334455544432 245689999999999999
Q ss_pred HHHHHHHHHHHHh
Q 026548 180 TAFFRLLQEIYGA 192 (237)
Q Consensus 180 ~~~~~l~~~i~~~ 192 (237)
++|++|++.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 167 QGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876433
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=5.2e-29 Score=192.45 Aligned_cols=159 Identities=20% Similarity=0.388 Sum_probs=121.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|.++.+.. +.++.+ +....+...+ +.+.+|||||++.+...+..+++.+|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 457899999999999999999999887653 334544 3344555555 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVD 179 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 179 (237)
+|||++++.+++.+..|+..+..... .++|++||+||+|+... ...+++.+... ..++++++|||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 99999999999999999888765432 57999999999999653 22333322211 234579999999999999
Q ss_pred HHHHHHHHHHHH
Q 026548 180 TAFFRLLQEIYG 191 (237)
Q Consensus 180 ~~~~~l~~~i~~ 191 (237)
++|++|++.+.+
T Consensus 180 ~l~~~l~~~i~~ 191 (192)
T 2b6h_A 180 DGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=8.8e-28 Score=183.81 Aligned_cols=159 Identities=22% Similarity=0.400 Sum_probs=124.6
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+++|++|+|||||+++|.+..+. .+.++.+. ....+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999999988653 23355553 344556665 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVD 179 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 179 (237)
+|||++++.+++.+..|+..+.... ..++|++||+||+|+.... ..++..+... ..++++++|||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 9999999999999988888765432 2579999999999997633 3333333211 234579999999999999
Q ss_pred HHHHHHHHHHHH
Q 026548 180 TAFFRLLQEIYG 191 (237)
Q Consensus 180 ~~~~~l~~~i~~ 191 (237)
++|++|++.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=3.3e-27 Score=196.68 Aligned_cols=164 Identities=30% Similarity=0.503 Sum_probs=143.9
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.||||||++.+...+..+++.+|++|
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3468999999999999999999999988777767765444 556778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEc
Q 026548 106 VVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEAS 171 (237)
Q Consensus 106 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 171 (237)
+|||++++.++..+. .|+..+.... .++|++||+||+|+... +.+..+++.+++...++ ++++||
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999986 7888887765 38999999999998643 56778889999999997 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 026548 172 ALNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 172 a~~~~gi~~~~~~l~~~i~~ 191 (237)
|++|.|++++|+.|.+.++.
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=1.7e-28 Score=188.72 Aligned_cols=160 Identities=22% Similarity=0.338 Sum_probs=127.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|..+.+.. +.++.+.. ...+..++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 357899999999999999999999887654 44565533 34455565 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA-----EDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 179 (237)
+|||++++.++..+..|+..+..... .++|+++|+||+|+.... ..++..+.. ...++++++|||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 99999999999999888888766433 579999999999997532 223333221 2234579999999999999
Q ss_pred HHHHHHHHHHHHh
Q 026548 180 TAFFRLLQEIYGA 192 (237)
Q Consensus 180 ~~~~~l~~~i~~~ 192 (237)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.95 E-value=1.2e-28 Score=189.06 Aligned_cols=163 Identities=20% Similarity=0.396 Sum_probs=121.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC--CCcCCCCCCcceeEEEEEEEE---CCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN--EFFFDSKSTIGVEFQTRTVTI---NGKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 102 (237)
.+||+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 444556677777776665544 335678999999999999999999999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC---HHHHHHHHHHcCCe----EEEEcCCC
Q 026548 103 GAVVVYDITKR-QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS---AEDAVEFAEDQGLF----FSEASALN 174 (237)
Q Consensus 103 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 174 (237)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+... .+...+++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 57889999999887654 479999999999987543321 22344555566776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHH
Q 026548 175 GD-NVDTAFFRLLQEIYG 191 (237)
Q Consensus 175 ~~-gi~~~~~~l~~~i~~ 191 (237)
+. +++++++.+.+.+.+
T Consensus 161 ~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 161 ESDALAKLRKTIINESLN 178 (184)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 97 899888888776654
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=1.3e-28 Score=190.81 Aligned_cols=165 Identities=19% Similarity=0.204 Sum_probs=121.9
Q ss_pred cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEE--EEE-CCEEEEEEEEeCCCcchhchhh--
Q 026548 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRT--VTI-NGKIIKAQIWDTAGQERYRAVT-- 94 (237)
Q Consensus 20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~l~Dt~G~~~~~~~~-- 94 (237)
..+.+....+||+|+|++|+|||||++++.+..... ++.+.++.... ..+ ++..+.+.||||||++.|....
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 88 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD 88 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh
Confidence 344566678999999999999999999888753322 23322222222 223 2455789999999999987776
Q ss_pred -HhhhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------CcCCCHHHHHHHHH---
Q 026548 95 -SAYYRGALGAVVVYDITKR--QSFDHVARWVEELRAHADSSIRIILIGNKSDLVD-------MRAVSAEDAVEFAE--- 161 (237)
Q Consensus 95 -~~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~-------~~~~~~~~~~~~~~--- 161 (237)
..+++++|++|+|||+++. +++..+..|+..+.... .++|++||+||+|+.. .+.+..+...+++.
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 8999999999999999997 67777777777765443 5899999999999754 23444555667777
Q ss_pred -HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 162 -DQGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 162 -~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
..+++|++|||++ .|++++|..+++.+
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6788999999999 99999999998865
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=9.9e-28 Score=183.18 Aligned_cols=160 Identities=21% Similarity=0.364 Sum_probs=125.7
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|.++.+ ..+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4578999999999999999999998877 4444666533 34555665 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----QGLFFSEASALNGDNVD 179 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 179 (237)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+. ...+++.+.... .++++++|||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999988876653 267999999999998653 334444443322 23479999999999999
Q ss_pred HHHHHHHHHHHHh
Q 026548 180 TAFFRLLQEIYGA 192 (237)
Q Consensus 180 ~~~~~l~~~i~~~ 192 (237)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=2.2e-30 Score=201.78 Aligned_cols=164 Identities=30% Similarity=0.503 Sum_probs=137.5
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 103 (237)
.....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 345679999999999999999999998888766666654433 4455667777888999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHcCC-eEEE
Q 026548 104 AVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQGL-FFSE 169 (237)
Q Consensus 104 ~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~ 169 (237)
+|+|||++++.+++.+. .|+..+.... .++|++||+||+|+.... .+..+++.+++...++ ++++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 99999999999999886 7888776654 379999999999986532 4555677788888887 8999
Q ss_pred EcCCCCCCHHHHHHHHHHHH
Q 026548 170 ASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 170 ~Sa~~~~gi~~~~~~l~~~i 189 (237)
|||++|.|++++|++|++.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999998765
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.8e-26 Score=182.80 Aligned_cols=170 Identities=18% Similarity=0.147 Sum_probs=123.1
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc------chh---chh
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ------ERY---RAV 93 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~---~~~ 93 (237)
......++|+|+|.+|+|||||+++|++..+.....+..+.......+...+ +.+.||||||. +.. ...
T Consensus 24 ~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 101 (228)
T 2qu8_A 24 SINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT 101 (228)
T ss_dssp SCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH
Confidence 3345689999999999999999999999887543334444445555555565 56889999998 331 122
Q ss_pred hHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH---HHHHHHHHcC--Ce
Q 026548 94 TSAYYRGALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE---DAVEFAEDQG--LF 166 (237)
Q Consensus 94 ~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~ 166 (237)
+..++..+|++|+|||++++.++. ....|+..+.... .++|++||+||+|+...+.+..+ ...+++...+ ++
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK 180 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence 345578899999999999987654 2335555554432 37999999999999876666554 4566777777 88
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548 167 FSEASALNGDNVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 167 ~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~ 195 (237)
+++|||++|.|++++|++|++.+.+....
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 181 FSSFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776643
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=8.7e-27 Score=175.61 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=117.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc------hhhHhhhc--
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR------AVTSAYYR-- 99 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-- 99 (237)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998876555556655666666666776 468899999988764 33455554
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
.+|++++|+|+++.+ ....|+..+.. .++|+++|+||+|+...+.+.. +..+++..++++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~---~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALE---RNLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHH---HHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchh---HhHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 899999999998854 34457766655 3799999999999865444432 3667888889999999999999999
Q ss_pred HHHHHHHHHH
Q 026548 180 TAFFRLLQEI 189 (237)
Q Consensus 180 ~~~~~l~~~i 189 (237)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=7.7e-28 Score=194.03 Aligned_cols=167 Identities=27% Similarity=0.339 Sum_probs=123.6
Q ss_pred CCCCceeeeEEEEcCC---------CCcHHHHHHHHhc---CCCcCCCCCCc-ceeEEEEE--------------EEECC
Q 026548 22 PDKIDYVFKVVVIGDS---------AVGKSQILSRFTK---NEFFFDSKSTI-GVEFQTRT--------------VTING 74 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~ 74 (237)
+......+||+|+|.+ |+|||||+++|++ ..+...+.+++ +.++.... ..+++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3455667999999999 9999999999999 45555555543 22222111 12456
Q ss_pred EEEEEEEEe-----------------------CCCcchhchhhHhhhc---------------------CCcEEEEEEEC
Q 026548 75 KIIKAQIWD-----------------------TAGQERYRAVTSAYYR---------------------GALGAVVVYDI 110 (237)
Q Consensus 75 ~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~ilv~d~ 110 (237)
..+.+.||| ++|++.+..++..+++ ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 778899999 6666667777777766 79999999999
Q ss_pred CCh--hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 111 TKR--QSFDHVARWVEELRAH-ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 111 ~~~--~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
+++ .+++.+..|+..+... ...++|++||+||+|+...+.+ +++.+++.. .++++++|||++|.|++++|++|+
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 998 9999999999988765 2357999999999998654433 567777776 478999999999999999999998
Q ss_pred HHHH
Q 026548 187 QEIY 190 (237)
Q Consensus 187 ~~i~ 190 (237)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8763
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=2.1e-26 Score=190.39 Aligned_cols=162 Identities=20% Similarity=0.318 Sum_probs=128.2
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcC---CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh-----chhhHhhh
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF---DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY-----RAVTSAYY 98 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~ 98 (237)
..+||+|+|++|+|||||+++|+++.... .+.+|.+..+ ..+.+++ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 36899999999999999999999874322 3345555444 3445544 478999999999988 67888899
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC--CcC----CCHHHHHHHHHHcC---CeE
Q 026548 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHA--DSSIRIILIGNKSDLVD--MRA----VSAEDAVEFAEDQG---LFF 167 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 167 (237)
+++|++|+|||++++.+++.+..|...+.... ..++|++||+||+|+.+ .+. ...+++.+++..+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877766554432 25799999999999876 333 45577888899887 689
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548 168 SEASALNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 168 ~~~Sa~~~~gi~~~~~~l~~~i~~~ 192 (237)
++|||++ .++.++|..+++.+...
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred EEeeecC-ChHHHHHHHHHHHHcCC
Confidence 9999999 89999999888765433
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=6.6e-26 Score=172.15 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=120.6
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+|||||++.+..++..++..+|++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 35689999999999999999999999887777677666666667777874 4679999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-------C--CeEEEEcCCCCC
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-------G--LFFSEASALNGD 176 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~ 176 (237)
+|||+++........ ++..+ ...++|+++|+||+|+... ..+......... + +++++|||++|.
T Consensus 84 ~v~d~~~~~~~~~~~-~l~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE-AINHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE 156 (178)
T ss_dssp EEEETTCCCCHHHHH-HHHHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred EEEECCCCCcHHHHH-HHHHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence 999998843222221 11222 2247999999999998652 233333333322 2 479999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 026548 177 NVDTAFFRLLQEIYGA 192 (237)
Q Consensus 177 gi~~~~~~l~~~i~~~ 192 (237)
|++++|++|++.+...
T Consensus 157 gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 157 GLDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhhhh
Confidence 9999999998876543
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=1.8e-25 Score=175.09 Aligned_cols=157 Identities=19% Similarity=0.181 Sum_probs=113.0
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE-EEEEEEEeCCCcchhch-hhHhhhcCCcEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK-IIKAQIWDTAGQERYRA-VTSAYYRGALGA 104 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 104 (237)
..++|+|+|++|+|||||+++|++..+...+. +.+..+.. +.+++. .+.+.||||||++.+.. ++..+++.+|++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 46899999999999999999999988776664 33334332 555533 47799999999999988 788899999999
Q ss_pred EEEEECCChh-hHHHHHH-HHHHHHHh--cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH----H---------------
Q 026548 105 VVVYDITKRQ-SFDHVAR-WVEELRAH--ADSSIRIILIGNKSDLVDMRAVSAEDAVEFA----E--------------- 161 (237)
Q Consensus 105 ilv~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~----~--------------- 161 (237)
|+|||+++.. ++..... |...+... ...++|++||+||+|+..... .+...+.. .
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhccccccC
Confidence 9999999853 4555544 44444332 235799999999999975432 22111111 1
Q ss_pred ------------------Hc--CCeEEEEcCCCC------CCHHHHHHHHHHH
Q 026548 162 ------------------DQ--GLFFSEASALNG------DNVDTAFFRLLQE 188 (237)
Q Consensus 162 ------------------~~--~~~~~~~Sa~~~------~gi~~~~~~l~~~ 188 (237)
.+ +++|++|||++| .||+++|++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=186.92 Aligned_cols=159 Identities=21% Similarity=0.388 Sum_probs=120.9
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 105 (237)
...++|+|+|.+|+|||||+++|.+..+.... +|.+.. ...+...+ +.+.||||||++.+..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 35679999999999999999999988865443 454433 33444555 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 026548 106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVD 179 (237)
Q Consensus 106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 179 (237)
+|||++++.++..+..|+..+..... .++|++||+||+|+.+.. ..+++..... ..++++++|||++|.||+
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 99999999999999888877655432 589999999999997633 3333333222 124569999999999999
Q ss_pred HHHHHHHHHHHH
Q 026548 180 TAFFRLLQEIYG 191 (237)
Q Consensus 180 ~~~~~l~~~i~~ 191 (237)
++|++|++.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.2e-25 Score=172.35 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=125.7
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc------hhhHhhhc-
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR------AVTSAYYR- 99 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 99 (237)
..++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++ +.+.+|||||++.+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999999776555557777777777777777 568899999988774 34555554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 100 -GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 100 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
.+|++++|+|+++ ++....|+..+.. .+.|+++|+||+|+...+.+. +...+++..++++++++||+++.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5999999999875 4556677777655 478999999999986544443 3567788888999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 026548 179 DTAFFRLLQEIYGAV 193 (237)
Q Consensus 179 ~~~~~~l~~~i~~~~ 193 (237)
+++|+++++.+.+..
T Consensus 157 ~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 157 EELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999998876543
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=7.8e-26 Score=173.51 Aligned_cols=157 Identities=22% Similarity=0.255 Sum_probs=118.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC-----------cchhchhhHhh
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG-----------QERYRAVTSAY 97 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~ 97 (237)
++|+|+|++|+|||||+++|.+..+...+.++.+.... .+.+. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999877666666554332 33333 477999999 66777777777
Q ss_pred hcC-CcEEEEEEECCChhhHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe
Q 026548 98 YRG-ALGAVVVYDITKRQSFDHV-ARWVEE--------L-RAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF 166 (237)
Q Consensus 98 ~~~-~d~~ilv~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 166 (237)
++. +++++++|++.+..++..+ ..|... + ......++|+++|+||+|+.... .+...+++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 7776677777666777665 556542 1 22222579999999999987643 56677888888864
Q ss_pred -------EEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548 167 -------FSEASALNGDNVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 167 -------~~~~Sa~~~~gi~~~~~~l~~~i~~~~~ 194 (237)
+++|||++|.|++++|++|.+.+.+...
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998876543
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=1.3e-25 Score=173.23 Aligned_cols=160 Identities=19% Similarity=0.185 Sum_probs=109.7
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----------cchhch
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----------QERYRA 92 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~ 92 (237)
.+....++|+|+|++|+|||||+++|++..+...+.++.+.+.......+++ .+.+||||| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence 3445689999999999999999999999876555445544444444444554 578999999 677777
Q ss_pred hhHhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH--HHHHH-HHHHcCCe
Q 026548 93 VTSAYYRGA---LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA--EDAVE-FAEDQGLF 166 (237)
Q Consensus 93 ~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~ 166 (237)
++..+++.+ |++++|+|+++..+..... ++..+.. .++|+++|+||+|+....++.. +++.+ +....+++
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 788887766 9999999999876665532 2222222 4789999999999976443321 22222 22234578
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Q 026548 167 FSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 167 ~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
++++||+++.|++++|++|.+.+
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEccCCCCHHHHHHHHHHHh
Confidence 99999999999999999998765
No 111
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=1.5e-26 Score=190.41 Aligned_cols=160 Identities=21% Similarity=0.218 Sum_probs=122.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcC---CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch---hhHhhhcCCcE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFF---DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA---VTSAYYRGALG 103 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~ 103 (237)
||+++|+.|+|||||++++.++..+. ...+|.+.++.. ++ ..++++||||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 69999999999999999988664432 245777766643 22 237899999999999964 46889999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-------cCCCHHHHHHHHHH----cCCeEEEE
Q 026548 104 AVVVYDITKR--QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM-------RAVSAEDAVEFAED----QGLFFSEA 170 (237)
Q Consensus 104 ~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 170 (237)
+|+|||+++. .+...+..|+..+.... .++|++|++||+|+... +++..+++.++++. +++.|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 33344444455544443 58999999999999753 34555666677775 67899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhcc
Q 026548 171 SALNGDNVDTAFFRLLQEIYGAVSKK 196 (237)
Q Consensus 171 Sa~~~~gi~~~~~~l~~~i~~~~~~~ 196 (237)
||++ .+|.++|..+++.+..+.+..
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~~l 179 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELSFL 179 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHHHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHHHH
Confidence 9998 689999999998877766543
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=7e-25 Score=192.49 Aligned_cols=160 Identities=23% Similarity=0.422 Sum_probs=125.9
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 104 (237)
....++|+|+|.+|+|||||+++|.+..+.. +.+|.+..+. .+...+ +.+.||||||++.+..++..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 3457999999999999999999999988543 4466554443 344444 6789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCH
Q 026548 105 VVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNV 178 (237)
Q Consensus 105 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 178 (237)
|+|||++++.++..+..|+..+..... .++|++||+||+|+... ...++..+... ..++++++|||++|.|+
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 999999999999999999888766433 57999999999999753 23333332221 12346999999999999
Q ss_pred HHHHHHHHHHHHH
Q 026548 179 DTAFFRLLQEIYG 191 (237)
Q Consensus 179 ~~~~~~l~~~i~~ 191 (237)
+++|++|.+.+.+
T Consensus 472 ~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 472 YEGLTWLTSNYKS 484 (497)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876543
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=7.6e-25 Score=176.65 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=122.9
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch------hhHhhh--
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA------VTSAYY-- 98 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~-- 98 (237)
..++|+|+|++|+|||||+|+|++..+.....++++.+.....+...+ +.+.||||||...+.. +...++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999887655556666666666666666 5788999999887764 234555
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
..+|++|+|+|+++.+.. ..|...+.. .++|+++|+||+|+...+.+.. +..+++..++++++++||++|.|+
T Consensus 82 ~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGL 154 (258)
T ss_dssp SCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTH
T ss_pred cCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCH
Confidence 589999999999986543 345555554 4799999999999865444432 367788889999999999999999
Q ss_pred HHHHHHHHHHHH
Q 026548 179 DTAFFRLLQEIY 190 (237)
Q Consensus 179 ~~~~~~l~~~i~ 190 (237)
+++|+++.+.+.
T Consensus 155 ~el~~~i~~~~~ 166 (258)
T 3a1s_A 155 EELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=1.3e-25 Score=170.38 Aligned_cols=152 Identities=24% Similarity=0.248 Sum_probs=115.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh--------hHhhh
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV--------TSAYY 98 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 98 (237)
..+|+|+|++|+|||||+++|.+..... ...++.+.++....+.+++. .+.+|||||.+.+... ...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 4799999999999999999999876532 23355556666777888874 4779999997653211 12357
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
+.+|++++|||+++..+++ ...|+..+......++|+++|+||+|+..... +++...+.++++|||++|.|+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGV 153 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTH
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCH
Confidence 8999999999999987765 34677777666556799999999999854211 112234678999999999999
Q ss_pred HHHHHHHHHHH
Q 026548 179 DTAFFRLLQEI 189 (237)
Q Consensus 179 ~~~~~~l~~~i 189 (237)
+++|++|.+.+
T Consensus 154 ~~l~~~l~~~~ 164 (172)
T 2gj8_A 154 DVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=7.3e-25 Score=163.59 Aligned_cols=150 Identities=16% Similarity=0.140 Sum_probs=107.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch-------hchhhHhhhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER-------YRAVTSAYYRG 100 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 100 (237)
.||+|+|++|+|||||+++|.+..+.. ...++.+.+.....+..++. .+.+|||||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 589999999999999999999887542 23344455566666777774 578999999877 34456678899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 026548 101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVD 179 (237)
Q Consensus 101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 179 (237)
+|++|+|||+++..+... .|+..+... .++|+++|+||+|+.... ++..+++ .+++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998543322 222222221 368999999999997542 2334455 5677 79999999999999
Q ss_pred HHHHHHHHHH
Q 026548 180 TAFFRLLQEI 189 (237)
Q Consensus 180 ~~~~~l~~~i 189 (237)
++|+++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999988753
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.92 E-value=4.9e-24 Score=176.18 Aligned_cols=162 Identities=17% Similarity=0.105 Sum_probs=126.3
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhc---------
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYR--------- 91 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~--------- 91 (237)
.+....-.|+++|.+|+|||||+|+|++.++..... +..+..........+ + .++.||||||...+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHH
Confidence 445567799999999999999999999998765332 334444444445555 5 578899999985543
Q ss_pred -hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEE
Q 026548 92 -AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFS 168 (237)
Q Consensus 92 -~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~ 168 (237)
..+..+++.+|++++|+|+++..+......|+..+.. .++|+++|+||+|+........+...++...++ .+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 5566788999999999999998888887777777665 368999999999987444455666777777775 7799
Q ss_pred EEcCCCCCCHHHHHHHHHHHH
Q 026548 169 EASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 169 ~~Sa~~~~gi~~~~~~l~~~i 189 (237)
++||++|.|++++|+++.+.+
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYL 180 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHS
T ss_pred EEeCCCCCCHHHHHHHHHHhC
Confidence 999999999999998888766
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=1.8e-24 Score=166.42 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=114.9
Q ss_pred CCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----------cchh
Q 026548 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----------QERY 90 (237)
Q Consensus 21 ~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~ 90 (237)
...+....++|+|+|++|+|||||+++|++..+.. ..++.+.+........+. .+.+||||| .+.+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~ 91 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW 91 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence 33455667899999999999999999999987433 334443333333333443 467999999 6667
Q ss_pred chhhHhhhcCC---cEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CCCHHHHHHHHHHc
Q 026548 91 RAVTSAYYRGA---LGAVVVYDITKRQSF--DHVARWVEELRAHADSSIRIILIGNKSDLVDMR--AVSAEDAVEFAEDQ 163 (237)
Q Consensus 91 ~~~~~~~~~~~---d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~~~~~~~~~~~~~ 163 (237)
..++..+++.+ |++++|+|+++..+. ..+..|+.. .++|+++|+||+|+.... ....++..+++...
T Consensus 92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 77777777655 999999999875333 233334433 268999999999986432 22334555666654
Q ss_pred C-CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548 164 G-LFFSEASALNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 164 ~-~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 191 (237)
+ ++++++||++|.|++++|++|.+.+.+
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 4 689999999999999999999987743
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.91 E-value=2.1e-25 Score=197.33 Aligned_cols=165 Identities=20% Similarity=0.224 Sum_probs=125.8
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEE------EEE--CCEEEEEEEEeCCCcchhchhhH
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRT------VTI--NGKIIKAQIWDTAGQERYRAVTS 95 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~Dt~G~~~~~~~~~ 95 (237)
.....+||+++|.+|+|||||+++|.+..+...+.++.+.++..+. +.+ ++..+.+.+|||||++.+..+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3456799999999999999999999999988777788777766542 112 22346789999999999999999
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548 96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG 175 (237)
Q Consensus 96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (237)
.+++.+|++|+|||+++. +.+..|+..+.... .+.|++||+||+|+...+.+..+...+++...++++++|||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999765 45677888887775 47999999999999887788888888888899999999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 026548 176 DNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 176 ~gi~~~~~~l~~~i~~~ 192 (237)
.|++++|+++.+.+.+.
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999998887654
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.91 E-value=1.2e-24 Score=175.34 Aligned_cols=151 Identities=16% Similarity=0.132 Sum_probs=119.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----------hhHhhh
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA----------VTSAYY 98 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~ 98 (237)
.+|+|+|.+|+|||||+|+|.+........++++.+.....+..++. .+.||||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998866666678888888888888885 678999999876653 455666
Q ss_pred --cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548 99 --RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD 176 (237)
Q Consensus 99 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (237)
..+|++|+|+|+++.+....+.. .+.. .++|+++|+||+|+........ ....+...++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~---~l~~---~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTS---QLFE---LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHH---HHTT---SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHH---HHHH---cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 89999999999998655444333 2322 4799999999999865433322 2455777889999999999999
Q ss_pred CHHHHHHHHHHH
Q 026548 177 NVDTAFFRLLQE 188 (237)
Q Consensus 177 gi~~~~~~l~~~ 188 (237)
|++++|+++.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999988765
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.91 E-value=9.7e-25 Score=177.15 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=116.5
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc------hhhHhhhc-
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR------AVTSAYYR- 99 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 99 (237)
..++|+++|++|+|||||+|+|++........++++.+. ....+.. .+.+.+|||||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 357999999999999999999998765444445544443 3333444 4678899999988775 34556665
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 100 -GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 100 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
.+|++|+|||+++.+. ...|...+.. .++|+++++||+|+...+.+. .+..+++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLER---NLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHh---HHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 6999999999988643 3456666555 479999999999986544443 3567788889999999999999999
Q ss_pred HHHHHHHHHHH
Q 026548 179 DTAFFRLLQEI 189 (237)
Q Consensus 179 ~~~~~~l~~~i 189 (237)
+++|+++.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=6.7e-24 Score=172.42 Aligned_cols=156 Identities=20% Similarity=0.183 Sum_probs=123.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch------hhHhhh--c
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA------VTSAYY--R 99 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~ 99 (237)
.++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++. .+.+|||||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 579999999999999999999998876666678888888778888874 478999999887765 455555 7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
.+|++++|+|+++.. ....|+..+... ..+|+++|+||+|+........+ ...+...++++++++||++|.|++
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence 899999999998853 333444454443 13999999999998654333332 667788899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 026548 180 TAFFRLLQEIYG 191 (237)
Q Consensus 180 ~~~~~l~~~i~~ 191 (237)
++|+.+.+.+..
T Consensus 155 ~l~~~i~~~~~~ 166 (271)
T 3k53_A 155 ELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999887644
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.90 E-value=2.8e-24 Score=174.86 Aligned_cols=154 Identities=13% Similarity=0.134 Sum_probs=118.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----------hhHhh
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA----------VTSAY 97 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~ 97 (237)
.++|+|+|.+|+|||||+|+|++..+.....++++.+.....+...+. .+.||||||...+.. .+..+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 579999999999999999999998876566677777777777777663 567999999877652 22333
Q ss_pred h--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548 98 Y--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG 175 (237)
Q Consensus 98 ~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (237)
+ +.+|++|+|+|+++.+... .|...+... ++|+++|+||+|+....... .....+...++++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNL---YLTLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHH---HHHHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 7999999999999865443 344444443 69999999999986533321 1245677788999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQEIY 190 (237)
Q Consensus 176 ~gi~~~~~~l~~~i~ 190 (237)
.|++++|+++.+.+.
T Consensus 154 ~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 154 RGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999988876543
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.90 E-value=3.5e-24 Score=168.72 Aligned_cols=166 Identities=15% Similarity=0.132 Sum_probs=110.0
Q ss_pred CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCc-C-CCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCc----------c
Q 026548 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFF-F-DSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQ----------E 88 (237)
Q Consensus 22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~----------~ 88 (237)
..+....++|+|+|.+|+|||||+++|++.... . ...+..+... ....+. .....+.||||||. +
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 100 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKA 100 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHH
Confidence 344556789999999999999999999998732 2 2223323332 233333 22256889999994 4
Q ss_pred hhchhhHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHHH-
Q 026548 89 RYRAVTSAYYRG---ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAED- 162 (237)
Q Consensus 89 ~~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~~- 162 (237)
.+..++..+++. +|++|+|+|+++..+. ....|+..+.. .++|+++|+||+|+...... ..+...+....
T Consensus 101 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 101 HWEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 445566666655 8889999999875432 22334444443 46899999999998653221 11222222222
Q ss_pred ------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548 163 ------QGLFFSEASALNGDNVDTAFFRLLQEIYGAV 193 (237)
Q Consensus 163 ------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~ 193 (237)
.+.+++++||++|.|++++|++|.+.+....
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4567999999999999999999988875543
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=4.6e-24 Score=184.32 Aligned_cols=188 Identities=18% Similarity=0.192 Sum_probs=128.6
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc----------chhchhh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ----------ERYRAVT 94 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 94 (237)
+..++|+++|.+|+|||||+|+|++.... ....++++.+.....+..++. .+.||||||+ +.|..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45799999999999999999999988764 333455556666666777875 4789999997 5555444
Q ss_pred H-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH-HHHH----cCCeEE
Q 026548 95 S-AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE-FAED----QGLFFS 168 (237)
Q Consensus 95 ~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~ 168 (237)
. .+++.+|++|+|||++++.+.++. .|+..+.. .++|++||+||+|+.+......++..+ +... .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 478899999999999998777665 56666654 479999999999997655544444333 2232 367899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHhhhcc------ccccCCCccCCCCCCCCCccccc
Q 026548 169 EASALNGDNVDTAFFRLLQEIYGAVSKK------ELECGNGKVDGPPMLAGSKIDVI 219 (237)
Q Consensus 169 ~~Sa~~~~gi~~~~~~l~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 219 (237)
++||++|.|++++|+.+.+.+....... ++........+||...++++++.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~~i~ 383 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIY 383 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEE
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCcceeEE
Confidence 9999999999999999988776533211 11111112245666666666553
No 125
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=3.3e-22 Score=168.50 Aligned_cols=163 Identities=19% Similarity=0.194 Sum_probs=124.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc---------hhhHh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR---------AVTSA 96 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~ 96 (237)
...++|+++|.+|+|||||+++|.+........+..+.......+...+ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4578999999999999999999998875433334444444444555555 568899999965432 12234
Q ss_pred hhcCCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC
Q 026548 97 YYRGALGAVVVYDITKRQ--SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN 174 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 174 (237)
+...+|++++|+|+++.. ++.....|+..+..... +.|+++|+||+|+..... .++..+++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 556799999999998876 67777888888877653 799999999999875332 2456667777889999999999
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 026548 175 GDNVDTAFFRLLQEIYGAV 193 (237)
Q Consensus 175 ~~gi~~~~~~l~~~i~~~~ 193 (237)
|.|++++|++|.+.+....
T Consensus 320 g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999886543
No 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=3e-24 Score=168.56 Aligned_cols=145 Identities=17% Similarity=0.280 Sum_probs=105.8
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC---CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcC
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD---SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG 100 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 100 (237)
.....++|+|+|++|+|||||+++|.+..+... +.++.+..+ ..+.+.+|||||++.+...+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 345578999999999999999999998876542 223332222 22468899999999999888888877
Q ss_pred ----CcEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCcCCC------HHHHHHHHHHcCC
Q 026548 101 ----ALGAVVVYDIT-KRQSFDHVARWVEELRAH----ADSSIRIILIGNKSDLVDMRAVS------AEDAVEFAEDQGL 165 (237)
Q Consensus 101 ----~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~vvv~nK~D~~~~~~~~------~~~~~~~~~~~~~ 165 (237)
+|++|+|||++ ++.++..+..|+..+... ...++|++||+||+|+.....+. .++...++...++
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888888888888877654 33589999999999997654432 3456667777778
Q ss_pred eEEEEcCCCCCC
Q 026548 166 FFSEASALNGDN 177 (237)
Q Consensus 166 ~~~~~Sa~~~~g 177 (237)
.++++||+++.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 899999998875
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=2.5e-23 Score=180.67 Aligned_cols=163 Identities=20% Similarity=0.169 Sum_probs=122.2
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----------cchhchh
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----------QERYRAV 93 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~ 93 (237)
....++|+++|.+|+|||||+++|.+.... ....++++.+.....+..++. .+.|||||| ++.+..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 345789999999999999999999977532 333355555555566677775 678999999 6777665
Q ss_pred hH-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-----CCeE
Q 026548 94 TS-AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-----GLFF 167 (237)
Q Consensus 94 ~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~ 167 (237)
.. .+++.+|++|+|+|+++..+. ....|...+.. .++|++||+||+|+...+....+++.+.+... ++++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 54 478999999999999885442 23345555544 47999999999999876677677777777654 5789
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548 168 SEASALNGDNVDTAFFRLLQEIYGAV 193 (237)
Q Consensus 168 ~~~Sa~~~~gi~~~~~~l~~~i~~~~ 193 (237)
+++||++|.|++++|+++.+.+....
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 99999999999999999988775544
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=1e-22 Score=176.96 Aligned_cols=157 Identities=19% Similarity=0.151 Sum_probs=99.2
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhh--------Hhh
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVT--------SAY 97 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 97 (237)
..++|+|+|.+|+|||||+|+|.+.... ....++++.+.....+.+++ +.+.||||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3578999999999999999999988643 33345666666667777888 468899999987765443 336
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN 177 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 177 (237)
++.+|++|+|||++++.++..+..+...+.... ++|+++|+||+|+...... ...++......+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 789999999999999877653333333333322 6999999999999764332 22334443246899999999999
Q ss_pred HHHHHHHHHHHHH
Q 026548 178 VDTAFFRLLQEIY 190 (237)
Q Consensus 178 i~~~~~~l~~~i~ 190 (237)
++++|++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988775
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.88 E-value=1.4e-23 Score=179.60 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=118.9
Q ss_pred ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh----
Q 026548 19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV---- 93 (237)
Q Consensus 19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---- 93 (237)
.|...+....++|+|+|..|+|||||+++|++..+.. ...++.+.+.....+.+.+.. .+.||||||++.+..+
T Consensus 25 sm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~ 103 (423)
T 3qq5_A 25 TMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLR 103 (423)
T ss_dssp CCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCC
T ss_pred ccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHH
Confidence 3445566778999999999999999999999988643 333555556666666666542 6889999998877554
Q ss_pred ---hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEE
Q 026548 94 ---TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEA 170 (237)
Q Consensus 94 ---~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
...++..+|++|+|||++.. .....|+..+... ++|+++|+||+|+...... +...+++..++++++++
T Consensus 104 ~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~v 175 (423)
T 3qq5_A 104 VEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLV 175 (423)
T ss_dssp HHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCC
T ss_pred HHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEE
Confidence 35578999999999999433 2345666666654 7999999999999765443 55666777788999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHh
Q 026548 171 SALNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 171 Sa~~~~gi~~~~~~l~~~i~~~ 192 (237)
||++|.|++++|++|.+.+.+.
T Consensus 176 SAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHHhhhhh
Confidence 9999999999999998887544
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=4.6e-22 Score=163.69 Aligned_cols=154 Identities=20% Similarity=0.176 Sum_probs=108.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcch--------hchhhHhh
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--------YRAVTSAY 97 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~ 97 (237)
+..+|+|+|.+|+|||||+|+|++..+.... .+.++.......+..++ .++.||||||... +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 3467999999999999999999999876432 23333333333344444 5788999999765 34455677
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-C-CeEEEEcCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWV-EELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-G-LFFSEASALN 174 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 174 (237)
++.+|++++|||++++.+.. ..|+ ..+.... .++|+++|+||+|+..... ...+.+..+ + .+++++||++
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence 89999999999998864433 2343 3444332 4799999999999865322 023333333 3 4689999999
Q ss_pred CCCHHHHHHHHHHHH
Q 026548 175 GDNVDTAFFRLLQEI 189 (237)
Q Consensus 175 ~~gi~~~~~~l~~~i 189 (237)
|.|++++|+.|.+.+
T Consensus 157 g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 157 ERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999998876644
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=6.1e-22 Score=172.18 Aligned_cols=154 Identities=20% Similarity=0.245 Sum_probs=117.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc-hhch--------hhHhh
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE-RYRA--------VTSAY 97 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~--------~~~~~ 97 (237)
.++|+|+|.+|+|||||+|+|.+.... ....++++.++....+.+++. .+.||||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 479999999999999999999988654 333466666777777778874 57899999987 5432 23457
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN 177 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 177 (237)
++.+|++|+|||++++.+++... ++..+ .+.|+++|+||+|+... ...+++.+++. .+++++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 88999999999999887765543 22322 36899999999999653 34455544432 446899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 026548 178 VDTAFFRLLQEIYGA 192 (237)
Q Consensus 178 i~~~~~~l~~~i~~~ 192 (237)
++++|++|.+.+...
T Consensus 392 i~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 392 LEKLEESIYRETQEI 406 (482)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999987654
No 132
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=1.9e-21 Score=162.89 Aligned_cols=126 Identities=16% Similarity=0.243 Sum_probs=103.4
Q ss_pred EEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcC-CCCc
Q 026548 67 TRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARWVEELRAHAD-SSIR 135 (237)
Q Consensus 67 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p 135 (237)
...+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ ..++.....|+..+..... .++|
T Consensus 185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 34455565 778999999999999999999999999999999998 4568888888888766432 5799
Q ss_pred EEEEEeCCCCCCCc---------------CCCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 136 IILIGNKSDLVDMR---------------AVSAEDAVEFAE-----------DQGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 136 ~vvv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
++|++||+|+...+ ....+++.+++. ..++.+++|||+++.||+++|.++.+.+
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 99999999985322 356788888887 3567899999999999999999999988
Q ss_pred HHhhh
Q 026548 190 YGAVS 194 (237)
Q Consensus 190 ~~~~~ 194 (237)
....-
T Consensus 343 ~~~~l 347 (353)
T 1cip_A 343 IKNNL 347 (353)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 76543
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.87 E-value=2.6e-22 Score=167.54 Aligned_cols=158 Identities=19% Similarity=0.184 Sum_probs=119.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----hchhhHhhhc---CC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----YRAVTSAYYR---GA 101 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~---~~ 101 (237)
.+|+|+|.+|||||||+++|.+........+..+.......+.+++. ..+.||||||... +..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 46899999999999999999987644333333333444444555531 3678999999543 3334455544 59
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEEEEcCCC
Q 026548 102 LGAVVVYDITK---RQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFSEASALN 174 (237)
Q Consensus 102 d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 174 (237)
|++|+|||+++ .++++.+..|+..+..+.. .++|++||+||+|+... .+...++...+. .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7888999999999887652 57999999999998652 234566667666 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 026548 175 GDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 175 ~~gi~~~~~~l~~~i~~ 191 (237)
+.|++++|++|.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999887743
No 134
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=6.6e-21 Score=151.88 Aligned_cols=165 Identities=12% Similarity=0.144 Sum_probs=107.2
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCC--CcceeEEEEEEEECCEEEEEEEEeCCCcc-----------h
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKS--TIGVEFQTRTVTINGKIIKAQIWDTAGQE-----------R 89 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~ 89 (237)
......++|+|+|.+|+|||||+|+|++..+.....+ +.+.......+.+++. .+.||||||.. .
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHH
Confidence 3445679999999999999999999999887655544 4555566666777774 57799999943 3
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC------HHHHHHHHH
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQS--FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS------AEDAVEFAE 161 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~------~~~~~~~~~ 161 (237)
+...+...++++|++|+|+|+++... ...+..+...+... ...|++||+||+|+.....+. .+..++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 44444555678899999999876333 22233333322222 246999999999986543322 235777888
Q ss_pred HcCCeEEEEcCCCC-----CCHHHHHHHHHHHHHH
Q 026548 162 DQGLFFSEASALNG-----DNVDTAFFRLLQEIYG 191 (237)
Q Consensus 162 ~~~~~~~~~Sa~~~-----~gi~~~~~~l~~~i~~ 191 (237)
..+..++.++...+ .++.++|..+.+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888888876643 5777777766665543
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=2.6e-21 Score=167.25 Aligned_cols=152 Identities=22% Similarity=0.276 Sum_probs=105.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch---------hchhhHhhh
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER---------YRAVTSAYY 98 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 98 (237)
.+|+++|.+|+|||||+|+|++..... ...++++.++....+.+++. .+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 479999999999999999999887543 34466666677777788885 467999999664 234556788
Q ss_pred cCCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHH-HHHHHHcCC-eEEEEcCCC
Q 026548 99 RGALGAVVVYDITKRQSFDH--VARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA-VEFAEDQGL-FFSEASALN 174 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 174 (237)
+.+|++|+|+|+++..+..+ +..|+. . .++|+++|+||+|+... . .... .++. .+++ .++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999987544332 333333 2 26899999999998532 0 1222 3443 4566 689999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 026548 175 GDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 175 ~~gi~~~~~~l~~~i~~~ 192 (237)
|.|++++|+++.+.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999999887643
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.85 E-value=2.4e-20 Score=159.57 Aligned_cols=157 Identities=16% Similarity=0.138 Sum_probs=112.8
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEE---------------------E---CCEEEEEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVT---------------------I---NGKIIKAQ 80 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~~~ 80 (237)
....++|+++|++|+|||||+++|++....... .+...... . ......+.
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL------GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS 78 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS------EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCccccccc------CccccceeeccccccccceecccccccccccccccccceEE
Confidence 345789999999999999999999985432211 00000000 0 11225788
Q ss_pred EEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHH
Q 026548 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVE 158 (237)
Q Consensus 81 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~ 158 (237)
||||||++.|...+...+..+|++|+|+|+++..+......|+..+.... ..|+++++||+|+.+.... ..++..+
T Consensus 79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 79 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp EEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999998766666677776665542 3589999999998753211 1122333
Q ss_pred HHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 159 FAEDQ---GLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 159 ~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
+.... +++++++||++|.|++++|++|.+.+
T Consensus 157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 33222 56899999999999999999888765
No 137
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=7.9e-21 Score=157.07 Aligned_cols=127 Identities=15% Similarity=0.183 Sum_probs=102.1
Q ss_pred EEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcC-CCC
Q 026548 66 QTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARWVEELRAHAD-SSI 134 (237)
Q Consensus 66 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~ 134 (237)
....+.+++ +.+.+||++|++.++..|..++++++++|+|||++ +..++.....|+..+..... .++
T Consensus 158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 344555565 78899999999999999999999999999999765 56667777777777665432 579
Q ss_pred cEEEEEeCCCCCCCc----------------CCCHHHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 135 RIILIGNKSDLVDMR----------------AVSAEDAVEFAE----------DQGLFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 135 p~vvv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
|++|++||+|+.+.+ ..+.+++.+++. ..++.+++|||+++.+|+.+|..+.+.
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 999999999986533 457788888743 356778999999999999999999999
Q ss_pred HHHhhh
Q 026548 189 IYGAVS 194 (237)
Q Consensus 189 i~~~~~ 194 (237)
|+++.-
T Consensus 316 Il~~~l 321 (327)
T 3ohm_A 316 ILQLNL 321 (327)
T ss_dssp HHHTTC
T ss_pred HHHHhH
Confidence 987643
No 138
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.85 E-value=1.7e-20 Score=158.04 Aligned_cols=159 Identities=18% Similarity=0.139 Sum_probs=110.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc---------hhchhhHhhhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE---------RYRAVTSAYYRG 100 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~ 100 (237)
.|+|+|++|+|||||+|+|.+..+.....+..+.+.....+.+++. .+.+|||+|.. .+...+ ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 4999999999999999999998764444455555666777888884 57899999962 233332 34789
Q ss_pred CcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC-CHHHHHHHHHHc---CCeEEEEcCCC
Q 026548 101 ALGAVVVYDITKRQ--SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV-SAEDAVEFAEDQ---GLFFSEASALN 174 (237)
Q Consensus 101 ~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~ 174 (237)
+|++++|+|++++. ....+..|...+......+.|+++|+||+|+.+.... ..+.+..++..+ +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999998876 5566666666666554457899999999998653210 011233334554 23689999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 026548 175 GDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 175 ~~gi~~~~~~l~~~i~~ 191 (237)
+.|+++++++|.+.+..
T Consensus 338 g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcc
Confidence 99999999998886654
No 139
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.85 E-value=8.9e-21 Score=165.37 Aligned_cols=155 Identities=16% Similarity=0.116 Sum_probs=111.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCC-------CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNE-------FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR 99 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 99 (237)
..++|+++|++++|||||+++|.+.. ......+.++.+.....+.+++ ..+.||||||++.|...+...+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 47899999999999999999999876 2223333444444444455566 56889999999999988889999
Q ss_pred CCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CCCHHHHHHHHHHc----CCeEEEE
Q 026548 100 GALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR--AVSAEDAVEFAEDQ----GLFFSEA 170 (237)
Q Consensus 100 ~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~~~~~~~~~~~~~----~~~~~~~ 170 (237)
.+|++|+|+|+++ +++.+.+ ..+.. .++|++|++||+|+.... +...++..+++... +++++++
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred hCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 9999999999988 4444333 22222 368889999999987521 11233455556555 5789999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q 026548 171 SALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 171 Sa~~~~gi~~~~~~l~~~i~ 190 (237)
||++|.|+++++++|.+.+.
T Consensus 169 SA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999988775
No 140
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=2.6e-20 Score=159.58 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=104.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCC---CcCCCCC--CcceeEEEEEEEE-------------C--C----EEEEEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNE---FFFDSKS--TIGVEFQTRTVTI-------------N--G----KIIKAQI 81 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l 81 (237)
...++|+++|+.++|||||+++|.+.. +.....+ |....+....+.. + + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 356899999999999999999998543 2233334 3333333333221 1 1 1367899
Q ss_pred EeCCCcchhchhhHhhhcCCcEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CCHHH
Q 026548 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VSAED 155 (237)
Q Consensus 82 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~~~~ 155 (237)
|||||++.|.......+..+|++|+|+|+++ +++.+.+.. +... ...|++|++||+|+..... ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9999999998877778889999999999985 444444432 2222 2357999999999976432 23456
Q ss_pred HHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 156 AVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 156 ~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
+.+++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6666665 3578999999999999999988887543
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.85 E-value=9.3e-21 Score=152.82 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=108.3
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCC-cceeEEEEEEEECCEEEEEEEEeCCCcchhchh---------
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKST-IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV--------- 93 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------- 93 (237)
....++|+|+|.+|+|||||+++|++..... ...++ ++.......+..++ ..+.||||||...+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3457899999999999999999999887433 33333 44555555666677 46789999997655322
Q ss_pred --hHhhhcCCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEe-CCCCCCCcCCCH-------HHHHHHHHH
Q 026548 94 --TSAYYRGALGAVVVYDITKRQSF-DHVARWVEELRAHADSSIRIILIGN-KSDLVDMRAVSA-------EDAVEFAED 162 (237)
Q Consensus 94 --~~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~vvv~n-K~D~~~~~~~~~-------~~~~~~~~~ 162 (237)
...+++.+|++|+|||+++.... ..+..|+..+.... ...|+++++| |+|+... .... +...+++..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 22367899999999999862221 22223333322111 1356666666 9998742 1111 224446666
Q ss_pred cCCeE-----EEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548 163 QGLFF-----SEASALNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 163 ~~~~~-----~~~Sa~~~~gi~~~~~~l~~~i~~~ 192 (237)
.+..+ +++||+++.|++++|.+|.+.+.+.
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 65432 6899999999999999999887653
No 142
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.85 E-value=9.3e-21 Score=168.39 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=110.5
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCC--CcC-----CCC------CCcceeEEEEE--EEE---CCEEEEEEEEeCCCcc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNE--FFF-----DSK------STIGVEFQTRT--VTI---NGKIIKAQIWDTAGQE 88 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-----~~~------~~~~~~~~~~~--~~~---~~~~~~~~l~Dt~G~~ 88 (237)
+..+|+|+|+.++|||||+++|+... +.. ... ...+.+..... +.+ ++..+.+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632 110 000 11122222222 222 4556889999999999
Q ss_pred hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe--
Q 026548 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-- 166 (237)
Q Consensus 89 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-- 166 (237)
.|...+...++.+|++|+|+|+++....+....|..... .++|+++++||+|+.... ..+...++...+++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999998766666666766543 378999999999997532 233345566666764
Q ss_pred -EEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 167 -FSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 167 -~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
++++||++|.|++++|+++.+.+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 899999999999999998887653
No 143
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.85 E-value=1.2e-20 Score=162.85 Aligned_cols=155 Identities=21% Similarity=0.183 Sum_probs=106.9
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCC-------------------------------cCCCCCCcceeEEEEEEEE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEF-------------------------------FFDSKSTIGVEFQTRTVTI 72 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 72 (237)
+....++|+++|++++|||||+++|+...- .....+.++.+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345578999999999999999999954321 1111234455555555555
Q ss_pred CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 026548 73 NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---FD---HVARWVEELRAHADSSIR-IILIGNKSDL 145 (237)
Q Consensus 73 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~vvv~nK~D~ 145 (237)
++ ..+.||||||++.|...+...+..+|++|+|+|+++... ++ .....+..+.. .++| ++|++||+|+
T Consensus 93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD 167 (439)
T ss_pred CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence 55 478899999999999999999999999999999988532 11 11122222222 3677 9999999998
Q ss_pred CCCc------CCCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHHH
Q 026548 146 VDMR------AVSAEDAVEFAEDQG------LFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 146 ~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~ 183 (237)
.... +...++..+++..++ ++++++||++|.|+.++++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 5311 111233444555544 4699999999999998665
No 144
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.85 E-value=1.9e-20 Score=166.17 Aligned_cols=159 Identities=21% Similarity=0.227 Sum_probs=113.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCC--CcC-----CC--------CCCcceeEEEEEEEE---CCEEEEEEEEeCCCc
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNE--FFF-----DS--------KSTIGVEFQTRTVTI---NGKIIKAQIWDTAGQ 87 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-----~~--------~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~ 87 (237)
.+..+|+++|+.++|||||+++|+... +.. .. ....+.......+.+ ++..+.+.||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 457899999999999999999997532 110 00 011111111111222 455678999999999
Q ss_pred chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC--
Q 026548 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-- 165 (237)
Q Consensus 88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 165 (237)
..|...+...++.+|++|+|+|+++....+....|..... .++|+++++||+|+.... ..+...++...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999999999999999999999999877777777766543 479999999999997532 22334556666676
Q ss_pred -eEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 166 -FFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 166 -~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
.++++||++|.|++++|+++.+.+.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcc
Confidence 3899999999999999998887654
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.84 E-value=1.6e-21 Score=168.85 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=104.7
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhH--------hh
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTS--------AY 97 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------~~ 97 (237)
..++|+++|++|+|||||+|+|.+..+.. ...++++.++....+.+++. .+.||||||...+...+. .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 35789999999999999999999876543 33355556665566777884 568999999766544333 35
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN 177 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 177 (237)
+..+|++|+|||++++.+... ..|+..+. ..|+++|+||+|+....... ...++. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 789999999999998766544 34444442 37999999999997644332 111111 346799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 026548 178 VDTAFFRLLQEIYG 191 (237)
Q Consensus 178 i~~~~~~l~~~i~~ 191 (237)
++++|++|.+.+..
T Consensus 371 i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 371 IDSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887754
No 146
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=3.7e-20 Score=148.33 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=106.4
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCC--cceeEEEEEEEECCEEEEEEEEeCCCc--------chhchh
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST--IGVEFQTRTVTINGKIIKAQIWDTAGQ--------ERYRAV 93 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~ 93 (237)
.....++|+|+|.+|+|||||+|+|++........++ ++.......+..++ ..+.||||||. +.+...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 3455799999999999999999999998876544333 33444445566676 45789999996 333333
Q ss_pred hHhhh----cCCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC------CCHHHHHHHHHH
Q 026548 94 TSAYY----RGALGAVVVYDITKRQSF-DHVARWVEELRAHADSSIRIILIGNKSDLVDMRA------VSAEDAVEFAED 162 (237)
Q Consensus 94 ~~~~~----~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~------~~~~~~~~~~~~ 162 (237)
+...+ +.+|++|+|+|+++.... ..+..|+..+......+.|++|++||.|+.+... ...+..+.+...
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 33333 899999999999862211 1223333333221113689999999999865210 011345677778
Q ss_pred cCCeEEEEcCCC-----CCCHHHHHHHHHHHHHHh
Q 026548 163 QGLFFSEASALN-----GDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 163 ~~~~~~~~Sa~~-----~~gi~~~~~~l~~~i~~~ 192 (237)
.+..++.++... +.|++++++.+.+.+.+.
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 888777776554 578888888777766543
No 147
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.84 E-value=1.6e-20 Score=154.65 Aligned_cols=155 Identities=21% Similarity=0.129 Sum_probs=106.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcc-h--------hchhhHhh
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQE-R--------YRAVTSAY 97 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~--------~~~~~~~~ 97 (237)
..+|+|+|++|+|||||+|+|++..+.... .+..+.......+..++ .++.+|||||.. . +.......
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 457999999999999999999998865432 23233333333344455 568899999987 2 23334566
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGD 176 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 176 (237)
++.+|++++|+|+++ - .....|+..... ..+.|+++++||+|+........+...++...++. .++++||+++.
T Consensus 86 l~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-W--TPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCEEEEEEEEETTC-C--CHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HhcCCEEEEEEeCCC-C--CHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 789999999999977 2 222233332222 24799999999999865222223344455555665 69999999999
Q ss_pred CHHHHHHHHHHHH
Q 026548 177 NVDTAFFRLLQEI 189 (237)
Q Consensus 177 gi~~~~~~l~~~i 189 (237)
|++++++.+.+.+
T Consensus 161 ~v~~l~~~i~~~l 173 (301)
T 1ega_A 161 NVDTIAAIVRKHL 173 (301)
T ss_dssp THHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhC
Confidence 9998888776543
No 148
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.84 E-value=3.4e-20 Score=155.84 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=95.5
Q ss_pred EEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCcE
Q 026548 68 RTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARWVEELRAHA-DSSIRI 136 (237)
Q Consensus 68 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ 136 (237)
..+.+++ +.+.+|||+|++.++..|..++++++++|+|||+++ ..++.....|+..+.... ..++|+
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 4455565 678999999999999999999999999999999999 678888888888877643 257999
Q ss_pred EEEEeCCCCCCCc----------------CCCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 137 ILIGNKSDLVDMR----------------AVSAEDAVEFAE-----------DQGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 137 vvv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
+|++||+|+...+ ....+++.+++. ..++.+++|||+++.||+++|.++.+.+
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 9999999985322 256777877762 3457799999999999999999999988
Q ss_pred HHhhh
Q 026548 190 YGAVS 194 (237)
Q Consensus 190 ~~~~~ 194 (237)
++..-
T Consensus 352 ~~~~l 356 (362)
T 1zcb_A 352 LHDNL 356 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=8.7e-20 Score=157.72 Aligned_cols=160 Identities=23% Similarity=0.186 Sum_probs=109.1
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh-----------
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV----------- 93 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 93 (237)
+..++|+|+|++|+|||||+|+|.+.... ....++++.+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 35689999999999999999999988753 233355555555667778885 4679999997433221
Q ss_pred -hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH-HHHH----cCCeE
Q 026548 94 -TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE-FAED----QGLFF 167 (237)
Q Consensus 94 -~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~ 167 (237)
....++.+|++++++|+++..+..+. .+...+.. .++|+++++||+|+...+....++..+ +... .++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 12457789999999999886555442 23333332 479999999999987654444444332 2232 35789
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHH
Q 026548 168 SEASALNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 168 ~~~Sa~~~~gi~~~~~~l~~~i~~ 191 (237)
+++||++|.|++++|+.+.+.+..
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999876644
No 150
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.83 E-value=3.8e-21 Score=156.40 Aligned_cols=160 Identities=15% Similarity=0.238 Sum_probs=92.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC--------CCCcceeEEEEEEEECCEEEEEEEEeCCCcc-------hh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS--------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQE-------RY 90 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~ 90 (237)
...++|+|+|.+|+|||||+|+|++....... .++++.+.....+..++..+.+.||||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 45789999999999999999998877654432 3555555555555445555689999999963 22
Q ss_pred chhh-------Hhhhc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 91 RAVT-------SAYYR-------------GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 91 ~~~~-------~~~~~-------------~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
..+. ..++. ++|+++++++.+.......-..++..+.. ++|+++|+||+|+....+
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 2222 22332 37889999976652211222233444332 799999999999864322
Q ss_pred C--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 151 V--SAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 151 ~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
. ..+.+.+.....+++++.+|+.++.|+++++.+|.+.+
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 1 12334555667789999999999999998887776543
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.83 E-value=5.2e-20 Score=157.83 Aligned_cols=159 Identities=22% Similarity=0.229 Sum_probs=110.0
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCC---cCCCCC--CcceeEEEEEEEE-------------C--C----EEEEEEE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEF---FFDSKS--TIGVEFQTRTVTI-------------N--G----KIIKAQI 81 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l 81 (237)
...++|+++|++++|||||+++|.+... .....+ |....+....+.. + + ....+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 4578999999999999999999985432 222223 3333333333221 1 1 1267899
Q ss_pred EeCCCcchhchhhHhhhcCCcEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CCHHH
Q 026548 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VSAED 155 (237)
Q Consensus 82 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~~~~ 155 (237)
|||||++.|.......+..+|++|+|+|+++ +++.+.+.. +... ...|++|++||+|+..... ...++
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~ 161 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENYRQ 161 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHHHH
Confidence 9999999998877778889999999999985 344444432 2222 2357999999999875321 12334
Q ss_pred HHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 156 AVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 156 ~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
+.+++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 162 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 162 IKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 4555543 3578999999999999999988876543
No 152
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=2.4e-21 Score=167.38 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=98.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcc--------hhchhhHhhhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQE--------RYRAVTSAYYR 99 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~ 99 (237)
++|+++|.+|+|||||+|+|++..+.... .+.++.+.....+.+.+ ..+.+|||||.+ .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999988764322 23333343333333344 468899999975 56666778889
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCH
Q 026548 100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNV 178 (237)
Q Consensus 100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 178 (237)
.+|++|+|+|+.++.+..+ .|+..+.. ..++|+++|+||+|+..... ...++. .+++ .++++||++|.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCCh
Confidence 9999999999988655443 23333222 25789999999999864321 111222 3454 6899999999999
Q ss_pred HHHHHHHHHHHH
Q 026548 179 DTAFFRLLQEIY 190 (237)
Q Consensus 179 ~~~~~~l~~~i~ 190 (237)
.++++++.+.+.
T Consensus 153 ~~L~~~i~~~l~ 164 (436)
T 2hjg_A 153 GDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHTGG
T ss_pred HHHHHHHHHhcC
Confidence 999999887764
No 153
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=3e-21 Score=162.65 Aligned_cols=164 Identities=14% Similarity=0.298 Sum_probs=92.7
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCC--------CCcceeEEEEEEEECCEEEEEEEEeCCCc-------ch
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSK--------STIGVEFQTRTVTINGKIIKAQIWDTAGQ-------ER 89 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~ 89 (237)
...++|+|+|++|+|||||+++|++..... .+. ++.+.......+..++..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 346899999999999999999987654332 221 33333333333444566678999999998 66
Q ss_pred hchhhH-------hhhcCC-------------cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548 90 YRAVTS-------AYYRGA-------------LGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM 148 (237)
Q Consensus 90 ~~~~~~-------~~~~~~-------------d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 148 (237)
+..++. .+++.+ |+++|+++.. ..++..+. .|+..+ ..++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 666665 555433 3445544431 33343333 333332 257999999999998764
Q ss_pred cCCCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548 149 RAVSA--EDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 149 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~ 195 (237)
+++.. +.+.+++..++++++++||+++.+ ++.|..+.+.+.+..+.
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 44332 456667777889999999999999 89999999999887764
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.83 E-value=1.7e-20 Score=163.95 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=98.8
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCc-------------------------------CCCCCCcceeEEEEEEEECC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFF-------------------------------FDSKSTIGVEFQTRTVTING 74 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 74 (237)
...+||+++|++++|||||+++|++.... ......++.+.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 34799999999999999999999755110 11112333333333333343
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH------VARWVEELRAHADSSIRIILIGNKSDLVDM 148 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 148 (237)
..+.||||||++.|...+..++..+|++|+|||+++..+... ....+...... ...|++||+||+|+.+.
T Consensus 111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTT
T ss_pred --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccc
Confidence 578899999999999999999999999999999998643321 12222222221 22469999999998763
Q ss_pred cCCCHHHH----HHHHHHc-----CCeEEEEcCCCCCCHHH
Q 026548 149 RAVSAEDA----VEFAEDQ-----GLFFSEASALNGDNVDT 180 (237)
Q Consensus 149 ~~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~gi~~ 180 (237)
.+...+++ .++.... +++++++||++|.|+++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 33323333 3333333 35799999999999985
No 155
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.82 E-value=8.2e-20 Score=152.95 Aligned_cols=120 Identities=16% Similarity=0.187 Sum_probs=95.2
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARWVEELRAHAD-SSIRIILIGNKS 143 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~ 143 (237)
..+.+.+|||+|++.++.+|..++++++++|+|||++ +..+++....|+..+..... .++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 67888888889888776432 679999999999
Q ss_pred CCCCCcC--C-------------------CHHHHHHHHHH----------------cCCeEEEEcCCCCCCHHHHHHHHH
Q 026548 144 DLVDMRA--V-------------------SAEDAVEFAED----------------QGLFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 144 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
|+...+. + ..+++.+++.. ..+.+++|||+++.||+++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854221 1 14566666443 123468999999999999999999
Q ss_pred HHHHHhhh
Q 026548 187 QEIYGAVS 194 (237)
Q Consensus 187 ~~i~~~~~ 194 (237)
+.+.+..-
T Consensus 341 ~~I~~~~l 348 (354)
T 2xtz_A 341 ETLRRRNL 348 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876543
No 156
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.3e-20 Score=142.56 Aligned_cols=116 Identities=19% Similarity=0.321 Sum_probs=88.2
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC---CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcC-
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD---SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG- 100 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~- 100 (237)
....++|+|+|++|+|||||+++|.+..+... ..++.+.++ ..+.+.+|||||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35678999999999999999999998876441 122222111 23568899999999988878777765
Q ss_pred ---CcEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCc
Q 026548 101 ---ALGAVVVYDIT-KRQSFDHVARWVEELRAH----ADSSIRIILIGNKSDLVDMR 149 (237)
Q Consensus 101 ---~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~vvv~nK~D~~~~~ 149 (237)
+|++|+|||++ +..++..+..|+..+... ...++|++||+||+|+....
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 899999988888776554 22579999999999997643
No 157
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.82 E-value=3.6e-22 Score=175.08 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=114.1
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
+.++|+++|++++|||||+++|.+..+.....++++.++....+..++. ..+.||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4578999999999999999999988776666566655554444444221 357899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-CCHHHHHHH---HHHc--CCeEEEEcCCCCCCHHH
Q 026548 107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-VSAEDAVEF---AEDQ--GLFFSEASALNGDNVDT 180 (237)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-~~~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~ 180 (237)
|||+++....+....| ..+. ..++|++|++||+|+.+... ...+...++ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 9999985544443322 2222 24789999999999864321 111122211 1112 24799999999999999
Q ss_pred HHHHHHHHH
Q 026548 181 AFFRLLQEI 189 (237)
Q Consensus 181 ~~~~l~~~i 189 (237)
+|++|...+
T Consensus 158 Lle~I~~l~ 166 (537)
T 3izy_P 158 LAEATIALA 166 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999888765
No 158
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=8.6e-20 Score=151.43 Aligned_cols=121 Identities=14% Similarity=0.239 Sum_probs=97.6
Q ss_pred EEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcC-CCCcEE
Q 026548 69 TVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARWVEELRAHAD-SSIRII 137 (237)
Q Consensus 69 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~v 137 (237)
.+.+++ +.+.+||++|++.++..|..++++++++|+|||++ +..++.....|+..+..... .++|++
T Consensus 155 ~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pii 232 (340)
T 4fid_A 155 DFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKL 232 (340)
T ss_dssp EEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEE
T ss_pred EEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEE
Confidence 344444 78899999999999999999999999999999998 67778888888888766433 679999
Q ss_pred EEEeCCCCCCCc---------------CCCHHHHHHHHHH-c--------------------------CCeEEEEcCCCC
Q 026548 138 LIGNKSDLVDMR---------------AVSAEDAVEFAED-Q--------------------------GLFFSEASALNG 175 (237)
Q Consensus 138 vv~nK~D~~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~ 175 (237)
|++||+|+...+ ..+.+++.+++.. . .+.+++|||+++
T Consensus 233 Lv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt 312 (340)
T 4fid_A 233 IFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDG 312 (340)
T ss_dssp EEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCH
T ss_pred EEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCc
Confidence 999999985411 1246666555433 2 367899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 026548 176 DNVDTAFFRLLQEIYG 191 (237)
Q Consensus 176 ~gi~~~~~~l~~~i~~ 191 (237)
.+|+.+|..+.+.|++
T Consensus 313 ~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 313 SNIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999988
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.82 E-value=5.3e-20 Score=161.75 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=83.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCC------------------CcC----CCCCCcceeEEEEEEEECCEEEEEEEEeC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNE------------------FFF----DSKSTIGVEFQTRTVTINGKIIKAQIWDT 84 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 84 (237)
...+|+|+|++|+|||||+++|+... ... ......+.......+...+ +.+.||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 36799999999999999999996211 000 0001122222334445555 57889999
Q ss_pred CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 85 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
||+..|...+..+++.+|++|+|+|+++.........|. .+.. .++|+++|+||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999876665554443 3333 4799999999999864
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.81 E-value=1.2e-19 Score=156.54 Aligned_cols=153 Identities=24% Similarity=0.250 Sum_probs=104.9
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcC--C----------CCC---------------------CcceeEEEEEEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFF--D----------SKS---------------------TIGVEFQTRTVT 71 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~--~----------~~~---------------------~~~~~~~~~~~~ 71 (237)
....++|+++|++++|||||+++|++..... . ... .++.+.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3457999999999999999999998654110 0 001 112222222333
Q ss_pred ECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCcC
Q 026548 72 INGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSI-RIILIGNKSDLVDMRA 150 (237)
Q Consensus 72 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~vvv~nK~D~~~~~~ 150 (237)
.++ ..+.||||||++.|...+..++..+|++|+|+|+++.... ....|+..+... ++ |++|++||+|+.+...
T Consensus 101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~ 174 (434)
T 1zun_B 101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDE 174 (434)
T ss_dssp CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCH
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccH
Confidence 344 5688999999999998888899999999999999985432 223344433332 44 6999999999975211
Q ss_pred ----CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 026548 151 ----VSAEDAVEFAEDQG-----LFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 151 ----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~ 183 (237)
...++..+++..++ ++++++||++|.|++++|.
T Consensus 175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 12344556667777 6799999999999998543
No 161
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.81 E-value=7.4e-19 Score=148.92 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=101.3
Q ss_pred EEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCcE
Q 026548 68 RTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARWVEELRAHA-DSSIRI 136 (237)
Q Consensus 68 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ 136 (237)
..+.+++ +.+.+|||+|++.++..|..++++++++|+|||+++ ..++.....|+..+.... ..++|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 3455565 788999999999999999999999999999999999 889999999999987653 367999
Q ss_pred EEEEeCCCCCCCcC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEEcCC
Q 026548 137 ILIGNKSDLVDMRA---V---------------------------SAEDAVEFA-----ED--------QGLFFSEASAL 173 (237)
Q Consensus 137 vvv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~ 173 (237)
+||+||+|+...+. + ..+++.+++ .. .++.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999854221 1 135566653 22 24668899999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhc
Q 026548 174 NGDNVDTAFFRLLQEIYGAVSK 195 (237)
Q Consensus 174 ~~~gi~~~~~~l~~~i~~~~~~ 195 (237)
++.||+++|.++.+.+....-+
T Consensus 368 d~~nV~~vF~~v~~~I~~~~l~ 389 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRMHLR 389 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888766543
No 162
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.81 E-value=1.6e-19 Score=160.50 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=106.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC----CCcceeEEEEEEE------E-CC-----EEEEEEEEeCCCcchhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSK----STIGVEFQTRTVT------I-NG-----KIIKAQIWDTAGQERYR 91 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~------~-~~-----~~~~~~l~Dt~G~~~~~ 91 (237)
.++|+|+|++++|||||+++|.+..+..... ++.+..+...... . .+ ....+.||||||++.|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 5689999999999999999998765533221 2222222111000 0 00 01248899999999999
Q ss_pred hhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC-------------H--
Q 026548 92 AVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS-------------A-- 153 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~-------------~-- 153 (237)
.++...++.+|++|+|||+++ +++++.+.. +.. .++|+++++||+|+...+... .
T Consensus 85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 85 TLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 999989999999999999998 666554432 222 479999999999986532210 0
Q ss_pred -H-------HHHHHHHHcC---------------CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548 154 -E-------DAVEFAEDQG---------------LFFSEASALNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 154 -~-------~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 191 (237)
+ +..+.....+ ++++++||++|.|+++++++|...+..
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 1111112222 379999999999999999999887654
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.80 E-value=1.7e-20 Score=161.93 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=103.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcC--CCcCC-----------------------------CCCCcceeEEEEEEEECCE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKN--EFFFD-----------------------------SKSTIGVEFQTRTVTINGK 75 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 75 (237)
..++|+++|++++|||||+++|+.. .+... .....+.+.....+...+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~- 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK- 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence 4689999999999999999999864 22110 012233333333333333
Q ss_pred EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhc----CCCC-cEEEEEeCCCCCCCc-
Q 026548 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA----DSSI-RIILIGNKSDLVDMR- 149 (237)
Q Consensus 76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~----~~~~-p~vvv~nK~D~~~~~- 149 (237)
..+.||||||++.|...+..++..+|++|+|||+++ .+++....|..+...+. ..++ |++|++||+|+.+..
T Consensus 84 -~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 84 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred -eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 568899999999999989999999999999999998 56664433322222211 1244 689999999987521
Q ss_pred -----CCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 026548 150 -----AVSAEDAVEFAEDQG-----LFFSEASALNGDNVDTAFF 183 (237)
Q Consensus 150 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~ 183 (237)
....+++.+++...+ ++++++||++|.|+.+++.
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112345666777666 6799999999999986653
No 164
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=4.5e-20 Score=160.21 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=99.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC--------cchhchhhHhhh
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG--------QERYRAVTSAYY 98 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~ 98 (237)
...+|+|+|.+|+|||||+|+|.+..+.... .+.+.+.......+......+.+||||| ++.+...+..++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 3679999999999999999999998765322 2333333333444433335788999999 667777788889
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCC
Q 026548 99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDN 177 (237)
Q Consensus 99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 177 (237)
+.+|++|+|+|..+..+... .|+..+... .++|+++|+||+|+.... +...++. ..+. .++++||++|.|
T Consensus 101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred hhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccc
Confidence 99999999999877433222 233332222 579999999999986421 1111221 2332 467999999999
Q ss_pred HHHHHHHHHHHHH
Q 026548 178 VDTAFFRLLQEIY 190 (237)
Q Consensus 178 i~~~~~~l~~~i~ 190 (237)
+.++++.+.+.+.
T Consensus 172 v~~L~~~i~~~l~ 184 (456)
T 4dcu_A 172 LGDLLDAVAEHFK 184 (456)
T ss_dssp HHHHHHHHHTTGG
T ss_pred hHHHHHHHHhhcc
Confidence 9999988877553
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.80 E-value=1.4e-19 Score=154.52 Aligned_cols=156 Identities=17% Similarity=0.087 Sum_probs=105.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC-------CcCC---------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNE-------FFFD---------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR 91 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 91 (237)
.++|+++|++++|||||+++|.+.. +... .....+.+. ....+......+.||||||++.|.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHHH
Confidence 5899999999999999999998641 1000 012222222 223333223568899999999998
Q ss_pred hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcC---CCHHHHHHHHHHcC---
Q 026548 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRA---VSAEDAVEFAEDQG--- 164 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~---~~~~~~~~~~~~~~--- 164 (237)
......+..+|++|+|+|+++....+....| ..+.. .++| ++|++||+|+..... ...+++.+++..++
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 8888889999999999999985433333333 33333 3688 689999999874211 11235666777665
Q ss_pred --CeEEEEcCCCCCC----------HHHHHHHHHHHH
Q 026548 165 --LFFSEASALNGDN----------VDTAFFRLLQEI 189 (237)
Q Consensus 165 --~~~~~~Sa~~~~g----------i~~~~~~l~~~i 189 (237)
++++++||++|.+ +.++++.|.+.+
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999998764 677776665543
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=6.7e-20 Score=163.77 Aligned_cols=154 Identities=19% Similarity=0.220 Sum_probs=102.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-------------------------------CCCcceeEEEEEEEECC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-------------------------------KSTIGVEFQTRTVTING 74 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 74 (237)
...++|+++|++|+|||||+++|++....... .+.++.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 44789999999999999999999876432211 12333333333344444
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCcC
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---FDHVARWVEELRAHADSSI-RIILIGNKSDLVDMRA 150 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~~~~~~~~~~-p~vvv~nK~D~~~~~~ 150 (237)
..+.||||||++.|...+...++.+|++|+|||+++... +.....+...+......++ |++||+||+|+....+
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 578899999999999989899999999999999987421 1001111122111112344 5999999999875322
Q ss_pred CCH----HHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 026548 151 VSA----EDAVEFAEDQG-----LFFSEASALNGDNVDTA 181 (237)
Q Consensus 151 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~ 181 (237)
... ++...++...+ ++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 222 23334444443 57999999999999876
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.79 E-value=1.3e-19 Score=153.00 Aligned_cols=147 Identities=12% Similarity=0.050 Sum_probs=105.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 109 (237)
+|+++|++++|||||+++|+. ...+.+.....+..++ ..+.||||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 999999999999999999981 1222222223333333 468899999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCcCCC--HHHHHHHHHHcC---CeEEE--EcCCC---CCC
Q 026548 110 ITKRQSFDHVARWVEELRAHADSSIRI-ILIGN-KSDLVDMRAVS--AEDAVEFAEDQG---LFFSE--ASALN---GDN 177 (237)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~g 177 (237)
+. ........|+..+.. .++|. ++++| |+|+ ...... .+++.+++...+ +++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 54 233444555555444 35777 89999 9998 422111 134455554443 68999 99999 999
Q ss_pred HHHHHHHHHHHHHHh
Q 026548 178 VDTAFFRLLQEIYGA 192 (237)
Q Consensus 178 i~~~~~~l~~~i~~~ 192 (237)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998876543
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.79 E-value=2e-20 Score=162.68 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=91.5
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC--CCcC-----------------------------CCCCCcceeEEEEEEEECC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFFF-----------------------------DSKSTIGVEFQTRTVTING 74 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 74 (237)
...++|+++|++++|||||+++|+.. .+.. ......+.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45789999999999999999999742 1110 0011222222223344454
Q ss_pred EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCc-
Q 026548 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMR- 149 (237)
Q Consensus 75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~- 149 (237)
..+.||||||++.|...+...+..+|++|+|||+++.. +|+....|...+......++| ++|++||+|+....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 56889999999999998888899999999999999852 222212222222222224677 99999999985311
Q ss_pred -----CCCHHHHHHHHHHc-------CCeEEEEcCCCCCCHHHHH
Q 026548 150 -----AVSAEDAVEFAEDQ-------GLFFSEASALNGDNVDTAF 182 (237)
Q Consensus 150 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~ 182 (237)
....+++.+++... +++++++||++|.|+.++|
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123456666665 3569999999999998766
No 169
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.79 E-value=1.7e-19 Score=154.40 Aligned_cols=145 Identities=17% Similarity=0.092 Sum_probs=100.8
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcC--------CCcCC---------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKN--------EFFFD---------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 89 (237)
..++|+++|++++|||||+++|.+. .+... .....+.+.....+...+ ..+.||||||++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCChHH
Confidence 4689999999999999999999873 11100 011222222222233233 5688999999999
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHcC-
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQG- 164 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~- 164 (237)
|.......+..+|++|+|+|+++.... ....|+..+.. .++| +++++||+|+...... ..++..+++..++
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 998888899999999999999886433 33455555444 3688 8899999998742111 1234556666665
Q ss_pred ----CeEEEEcCCCCCC
Q 026548 165 ----LFFSEASALNGDN 177 (237)
Q Consensus 165 ----~~~~~~Sa~~~~g 177 (237)
++++++||++|.|
T Consensus 164 ~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 164 PGDEVPVIRGSALLALE 180 (405)
T ss_dssp CTTTSCEEECCHHHHHH
T ss_pred cccCCCEEEccHHHhhh
Confidence 6799999999987
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.78 E-value=2.1e-19 Score=147.56 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=103.1
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC------CC----------------------ccee-----------
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK------ST----------------------IGVE----------- 64 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~------~~----------------------~~~~----------- 64 (237)
.....++|+|+|.+|+|||||+|+|++..+.+... ++ .+.+
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 34557899999999999999999999988743221 21 0000
Q ss_pred ------------EEEEEEEECCEEEEEEEEeCCCcc-------------hhchhhHhhhcCCcEEE-EEEECCChhhHHH
Q 026548 65 ------------FQTRTVTINGKIIKAQIWDTAGQE-------------RYRAVTSAYYRGALGAV-VVYDITKRQSFDH 118 (237)
Q Consensus 65 ------------~~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~ 118 (237)
.....+.... ...+.||||||.. .+..++..+++.++.+| +|+|+++..+...
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~ 180 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH
T ss_pred HhcccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH
Confidence 0000001110 1468899999954 34556677888888766 7999987544433
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH--cC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 026548 119 VARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED--QG-LFFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 119 ~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
...++..+. ..+.|+++|+||+|+........+........ .+ .+++++||+++.|++++|+++.+.
T Consensus 181 ~~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 181 ALKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 333444432 25789999999999876443223222210001 12 357889999999999999988873
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.78 E-value=4.2e-21 Score=167.02 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=106.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 106 (237)
+.++|+++|++++|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++...+..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 457899999999999999999987665544333333333222233344 357899999999999999999999999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CCCHH--HHHHHHHHcC--CeEEEEcCCCCCC
Q 026548 107 VYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR--AVSAE--DAVEFAEDQG--LFFSEASALNGDN 177 (237)
Q Consensus 107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~g 177 (237)
|||+++ +++.+.+ ..+.. .++|+++++||+|+.+.. .+..+ +...++..++ ++++++||++|.|
T Consensus 81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 999988 4444332 22222 478999999999986421 11000 0000112233 6899999999999
Q ss_pred HHHHHHHHHH
Q 026548 178 VDTAFFRLLQ 187 (237)
Q Consensus 178 i~~~~~~l~~ 187 (237)
++++|++|..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999988764
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.78 E-value=1.4e-18 Score=135.23 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=100.4
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----------hch
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----------YRA 92 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~ 92 (237)
-......+|+++|++|+|||||+++|.+..+.....++.+.......+.+++ .+.+|||||... +..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence 3445568999999999999999999998774333334444443333344433 367999999742 233
Q ss_pred hhHhhh---cCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CCHHHHHHHHHHcC-
Q 026548 93 VTSAYY---RGALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VSAEDAVEFAEDQG- 164 (237)
Q Consensus 93 ~~~~~~---~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~~~~~~~~~~~~~- 164 (237)
....++ ..++++++++|+++..+.. .+..|+. . .++|+++++||+|+....+ ...+.+..++...+
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence 333444 5789999999998864433 2333332 1 4689999999999864321 11344555555544
Q ss_pred -CeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 165 -LFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 165 -~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
+.++++|++++.|++++++.|.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHH
Confidence 4688999999999999998887764
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.77 E-value=7.9e-18 Score=135.89 Aligned_cols=126 Identities=16% Similarity=0.122 Sum_probs=88.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC-CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc------
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD-SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR------ 99 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------ 99 (237)
..++|+|+|.+|+|||||+++|++..+... ..+..+.......+..++ ..+.||||||+..+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 478999999999999999999999876332 223334445555566677 46889999998877655444443
Q ss_pred ---CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCcCCCHH
Q 026548 100 ---GALGAVVVYDITKRQSFDHVARWVEELRAHADSS--IRIILIGNKSDLVDMRAVSAE 154 (237)
Q Consensus 100 ---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~vvv~nK~D~~~~~~~~~~ 154 (237)
.+|++|+|++++..........|+..+......+ .|+++|+||+|+........+
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 7899999999876542223346666666654333 499999999998654444444
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.76 E-value=2.4e-19 Score=155.57 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=101.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcC--CCcCC-----------------------------CCCCcceeEEEEEEEECCE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKN--EFFFD-----------------------------SKSTIGVEFQTRTVTINGK 75 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 75 (237)
..++|+++|++++|||||+++|++. .+... ....++.+.....+..++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~- 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK- 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC-
Confidence 4689999999999999999999864 11100 002222222223333444
Q ss_pred EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCC
Q 026548 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SFD---HVARWVEELRAHADSSIR-IILIGNKSDLVDM 148 (237)
Q Consensus 76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~ 148 (237)
..+.||||||++.|.......+..+|++|+|+|+++.. +|+ ....++..+.. .++| ++|++||+|+.+.
T Consensus 85 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred -ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccC
Confidence 56889999999999998889999999999999998753 221 22222222222 3565 8999999998732
Q ss_pred cC----CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 026548 149 RA----VSAEDAVEFAEDQG-----LFFSEASALNGDNVDTA 181 (237)
Q Consensus 149 ~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~ 181 (237)
.. ...++..+++..++ ++++++||++|.|+.++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11 12234555666665 67999999999999754
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.76 E-value=8.1e-18 Score=143.56 Aligned_cols=161 Identities=16% Similarity=0.111 Sum_probs=113.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----hchhhHh---hhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----YRAVTSA---YYRGA 101 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~ 101 (237)
-.|+|+|++|||||||+++|.+........+..+.......+.+++ ...+.+||+||... +..+... .+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999998754322223333333444454543 23578999999643 2222222 24579
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
+.+++++|++ ...+..+..|..++..+.. ...|.+|++||+|+... ...+...+.+...++.++.+||+++.|++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999998 5566777777777665432 35899999999998753 22344555555667889999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 026548 180 TAFFRLLQEIYGAV 193 (237)
Q Consensus 180 ~~~~~l~~~i~~~~ 193 (237)
+++++|.+.+.+..
T Consensus 314 eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 314 ALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887644
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.75 E-value=1.4e-18 Score=161.71 Aligned_cols=160 Identities=18% Similarity=0.098 Sum_probs=105.1
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCC-------cC-------CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEF-------FF-------DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY 90 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 90 (237)
....++|+++|++++|||||+++|++... .. ....+.+.++....+.++.....+.||||||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 34579999999999999999999986410 00 00011222222122233333357889999999999
Q ss_pred chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHcC--
Q 026548 91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQG-- 164 (237)
Q Consensus 91 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 164 (237)
.......+..+|++|+|||+++....+ ...|+..+.. .++| +||++||+|+....+. ..+++.+++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 988888999999999999998853322 2334444443 2688 7899999999752211 1245666777665
Q ss_pred ---CeEEEEcCCCC--------CCHHHHHHHHHHH
Q 026548 165 ---LFFSEASALNG--------DNVDTAFFRLLQE 188 (237)
Q Consensus 165 ---~~~~~~Sa~~~--------~gi~~~~~~l~~~ 188 (237)
++++++||++| .|+.++++.|.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 57999999999 3566666655543
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.75 E-value=5.8e-18 Score=152.88 Aligned_cols=116 Identities=12% Similarity=0.098 Sum_probs=82.7
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC------------------CCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK------------------STIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
.....+|+|+|+.|+|||||+++|.+........ ..++.......+.... +.++||||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCC
Confidence 3456799999999999999999998433221100 1222223333333344 6788999999
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 146 (237)
+..|...+..+++.+|++++|+|+++...... ..++..+.. .++|+++++||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 99999989999999999999999887544332 244444443 379999999999986
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.75 E-value=2.3e-19 Score=159.85 Aligned_cols=150 Identities=24% Similarity=0.229 Sum_probs=82.2
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCc-------------------------------CCCCCCcceeEEEEEEEEC
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFF-------------------------------FDSKSTIGVEFQTRTVTIN 73 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 73 (237)
....++|+++|++++|||||+++|+..... ....++++.+.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 345789999999999999999999642110 0112233333333333333
Q ss_pred CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 026548 74 GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SF---DHVARWVEELRAHADSSIR-IILIGNKSDLV 146 (237)
Q Consensus 74 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~ 146 (237)
+ ..+.||||||++.|...+...+..+|++|+|+|+++.. .+ ......+..+.. .++| +|||+||+|+.
T Consensus 254 ~--~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 K--KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred C--eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence 3 57889999999999988888899999999999998532 11 111111222222 3566 89999999986
Q ss_pred CCcCCC----HHHHHHHH-HHcCC-----eEEEEcCCCCCCHH
Q 026548 147 DMRAVS----AEDAVEFA-EDQGL-----FFSEASALNGDNVD 179 (237)
Q Consensus 147 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~gi~ 179 (237)
...... .+++.++. ...++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 521111 22333444 33454 69999999999998
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.74 E-value=1.8e-18 Score=145.88 Aligned_cols=156 Identities=12% Similarity=0.112 Sum_probs=104.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEE--------------------------------------
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTR-------------------------------------- 68 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 68 (237)
....|+|+|++|||||||+|+|.+..+.+....+++......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 455999999999999999999999887544333222110000
Q ss_pred ----------------EEEECCEEEEEEEEeCCCcchh-------------chhhHhhhcCCcEEEEEEECCChhhHHHH
Q 026548 69 ----------------TVTINGKIIKAQIWDTAGQERY-------------RAVTSAYYRGALGAVVVYDITKRQSFDHV 119 (237)
Q Consensus 69 ----------------~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~ 119 (237)
.+.... ...+.||||||...+ ..+...+++.+|++|+++|..+.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETT-SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HhcCCCCCcccceEEEEEeCCC-CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 000010 124789999997765 556778899999999999875533221
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548 120 ARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (237)
Q Consensus 120 ~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 185 (237)
..|+..+......+.|+++|+||+|+........+....+...++.+|+.+++.++.++++.+..+
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 234444444444678999999999987655544444444444567789999999888777655443
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.74 E-value=1.9e-17 Score=150.08 Aligned_cols=165 Identities=15% Similarity=0.170 Sum_probs=109.4
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcce------------eE---------------------------
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGV------------EF--------------------------- 65 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~------------~~--------------------------- 65 (237)
...++|+|+|.+|+|||||+|+|++..+.+... +++.. ..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 347899999999999999999999988655432 33210 00
Q ss_pred --------------EEEEEEECCEE--EEEEEEeCCCcch---hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHH
Q 026548 66 --------------QTRTVTINGKI--IKAQIWDTAGQER---YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL 126 (237)
Q Consensus 66 --------------~~~~~~~~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 126 (237)
....+..+... ..+.||||||... ....+..+++.+|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 00001111000 2478999999655 3345567889999999999999887777766665444
Q ss_pred HHhcCCCCcEEEEEeCCCCCCCcCCCHH----------HHHHH----H-HH--------cCCeEEEEcCC----------
Q 026548 127 RAHADSSIRIILIGNKSDLVDMRAVSAE----------DAVEF----A-ED--------QGLFFSEASAL---------- 173 (237)
Q Consensus 127 ~~~~~~~~p~vvv~nK~D~~~~~~~~~~----------~~~~~----~-~~--------~~~~~~~~Sa~---------- 173 (237)
.. .+.|+++|+||+|+........+ ...+. . .. ...++++|||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 32 36789999999998654311111 11111 1 11 12369999999
Q ss_pred ----CCCCHHHHHHHHHHHHHHhh
Q 026548 174 ----NGDNVDTAFFRLLQEIYGAV 193 (237)
Q Consensus 174 ----~~~gi~~~~~~l~~~i~~~~ 193 (237)
++.|+++++..|.+.+....
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred hhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999988775443
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=4.6e-17 Score=147.58 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=83.7
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCC--C------cCC----------CCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNE--F------FFD----------SKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~--~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
..+..+|+|+|++|+|||||+++|+... + ... .....+.......+...+ +.+.||||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG 86 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPG 86 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcC
Confidence 3457899999999999999999998421 1 000 011122222233344454 6788999999
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
+..|...+..+++.+|++|+|+|+++.........|.. +.. .++|+++++||+|+..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 99999999999999999999999998777666655554 333 3799999999999864
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=2.4e-18 Score=141.50 Aligned_cols=164 Identities=16% Similarity=0.269 Sum_probs=88.5
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC-CCcCCCCC------CcceeEEEEEEEE--CCEEEEEEEEeCCCc-------ch
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN-EFFFDSKS------TIGVEFQTRTVTI--NGKIIKAQIWDTAGQ-------ER 89 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~-~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~-------~~ 89 (237)
...++|+|+|++|+|||||+++|.+. .++....+ +.+.......+.+ ++..+.+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 44689999999999999999998876 33322210 1111111112222 333467899999997 55
Q ss_pred hchhhH-------hhhc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548 90 YRAVTS-------AYYR-------------GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149 (237)
Q Consensus 90 ~~~~~~-------~~~~-------------~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 149 (237)
+..+.. .+++ .+++++|+.+.+. .+++.+. ...+.... .++|+++|+||.|+....
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence 555443 3332 2344555555332 1222222 12233333 468999999999987543
Q ss_pred CC--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548 150 AV--SAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS 194 (237)
Q Consensus 150 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~ 194 (237)
++ ..+++.+++..++++++++||+++ +++++|..+.+.+.+..+
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 32 245678888999999999999999 999999999999876655
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.72 E-value=9.3e-17 Score=130.12 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=84.1
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhH-------hh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTS-------AY 97 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~ 97 (237)
...++|+|+|.+|+|||||+|+|++..+.... .+..+.......+...+ +.+.||||||...+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 34789999999999999999999988764322 22223333333444455 5688999999876643222 12
Q ss_pred --hcCCcEEEEEEECCChhhHH-HHHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCcCCCHH
Q 026548 98 --YRGALGAVVVYDITKRQSFD-HVARWVEELRAHADSS--IRIILIGNKSDLVDMRAVSAE 154 (237)
Q Consensus 98 --~~~~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~--~p~vvv~nK~D~~~~~~~~~~ 154 (237)
.+.+|++|+|+|++... +. ....|+..+......+ .|+++|+||+|+........+
T Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~ 175 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD 175 (270)
T ss_dssp TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence 24799999999987532 32 2346667666554322 699999999998654443333
No 184
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=4.6e-17 Score=134.58 Aligned_cols=162 Identities=15% Similarity=0.150 Sum_probs=95.5
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeE----EEE--------------------------------
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEF----QTR-------------------------------- 68 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~----~~~-------------------------------- 68 (237)
....++|+|+|.+|+|||||+|+|++..+.+......+... ...
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 34567999999999999999999999886332211111000 000
Q ss_pred ---------------------E--EEECCEEEEEEEEeCCCcch-------------hchhhHhhhcCCcEEEEEEECCC
Q 026548 69 ---------------------T--VTINGKIIKAQIWDTAGQER-------------YRAVTSAYYRGALGAVVVYDITK 112 (237)
Q Consensus 69 ---------------------~--~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~ 112 (237)
. +.... ...+.||||||... +...+..++..+|++|+|+|..+
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCC-CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 0 01111 13588999999653 44566778899999999999743
Q ss_pred hh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC---CC---CCCHHHHHHHH
Q 026548 113 RQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA---LN---GDNVDTAFFRL 185 (237)
Q Consensus 113 ~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~gi~~~~~~l 185 (237)
.. .......+...+ ...+.|+++|+||+|+........+.........+..++++++ .+ +.|+.+++..+
T Consensus 180 ~~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 180 TDLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp SCSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred cchhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 22 111111222222 2257899999999998764432222222111112245666654 44 78889888777
Q ss_pred HHHHH
Q 026548 186 LQEIY 190 (237)
Q Consensus 186 ~~~i~ 190 (237)
.+.+.
T Consensus 257 ~~~~~ 261 (315)
T 1jwy_B 257 ILYFK 261 (315)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 185
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.71 E-value=1.5e-16 Score=139.98 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=78.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC----------------------CCCcceeEEEEEEEECCEEEEEEEEeC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDS----------------------KSTIGVEFQTRTVTINGKIIKAQIWDT 84 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt 84 (237)
..++|+|+|++|+|||||+++|+...-.... ....+.......+...+ +.+.||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 4689999999999999999999863211100 00111111122333444 57889999
Q ss_pred CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 85 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
||+..|...+..+++.+|++|+|+|+++...... ..++..+. ..++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 9999999888889999999999999987533222 22222222 25799999999999864
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=6.6e-16 Score=140.17 Aligned_cols=119 Identities=18% Similarity=0.112 Sum_probs=83.2
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCC--CcC------C-----C-----CCCcceeEEEEEEEEC-----CEEEEEEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNE--FFF------D-----S-----KSTIGVEFQTRTVTIN-----GKIIKAQI 81 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~------~-----~-----~~~~~~~~~~~~~~~~-----~~~~~~~l 81 (237)
..+..+|+|+|+.|+|||||+++|+... +.. . + ....+.......+.++ +..+.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3456899999999999999999997531 110 0 0 0111222222223332 23378999
Q ss_pred EeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 82 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
|||||+..|...+...++.+|++|+|+|+++.........|.. ... .++|+++++||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCccc
Confidence 9999999999999999999999999999998655544444432 222 4799999999999854
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=3.8e-16 Score=141.63 Aligned_cols=117 Identities=18% Similarity=0.204 Sum_probs=83.9
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcC--CCcCC---C-------------CCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKN--EFFFD---S-------------KSTIGVEFQTRTVTINGKIIKAQIWDTAG 86 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 86 (237)
..+..+|+|+|++|+|||||+++|+.. .+... . ...++.......+..++ +.+.||||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 345789999999999999999999852 21100 0 01112222223344455 5788999999
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
+..+...+..+++.+|++|+|+|+++..+......|.. +.. .++|+++|+||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 99999989999999999999999998766666555543 333 3789999999999864
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=1.8e-17 Score=141.07 Aligned_cols=85 Identities=25% Similarity=0.260 Sum_probs=47.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEE--E-------------------EECC-EEEEEEEEeCCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRT--V-------------------TING-KIIKAQIWDTAG 86 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~l~Dt~G 86 (237)
++|+++|.+|+|||||+|+|++........+..+.+..... + .+++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999988733222233332222221 1 1233 246799999999
Q ss_pred cchh----chhhH---hhhcCCcEEEEEEECCCh
Q 026548 87 QERY----RAVTS---AYYRGALGAVVVYDITKR 113 (237)
Q Consensus 87 ~~~~----~~~~~---~~~~~~d~~ilv~d~~~~ 113 (237)
.... ..+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22333 346899999999999875
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.69 E-value=1.3e-17 Score=137.25 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=109.3
Q ss_pred HHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh-hHHHHH
Q 026548 43 QILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVA 120 (237)
Q Consensus 43 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~ 120 (237)
+|+.+++.+.|. ..+.+|++..+. ..+..++ .+.+||+ ++++..++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888888 778899985544 3322233 5789999 8999999999999999999999999987 788899
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHH
Q 026548 121 RWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 121 ~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
.|+..+.. .++|++||+||+|+...+.+ ++..+++..++ +++++|||++|.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99987765 47999999999999754322 45677777777 89999999999999999987654
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=2.9e-17 Score=140.26 Aligned_cols=162 Identities=16% Similarity=0.259 Sum_probs=81.8
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC--------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc----
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS--------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR---- 91 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---- 91 (237)
-....++|+|+|++|+|||||++.|++..+.... .++.........+...+....+.+||++|...+.
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 3344688999999999999999999988763221 1122111111111223333578899999975431
Q ss_pred ---hh------------------hHhhhcCCcEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548 92 ---AV------------------TSAYYRGALGAVVVYDITKR-QSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM 148 (237)
Q Consensus 92 ---~~------------------~~~~~~~~d~~ilv~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 148 (237)
.+ ...++.++++.+++|..... .+++.+. .|+..+. .++|+|+|+||+|+...
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccH
Confidence 11 12234455543444443322 2333332 4555543 37999999999998764
Q ss_pred cCCCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 149 RAVSA--EDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 149 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
+++.. +.+.+.+...+++++++|++++.++.++|..+...+
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 44433 567778888899999999999999998777666543
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=7.3e-15 Score=129.76 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=82.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCC------------------C----cCCCCCCcceeEEEEEEEECCEEEEEEEEe
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNE------------------F----FFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 83 (237)
.+..+|+|+|+.++|||||..+|+... + +......+++.-....+.+++ +.++|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 346799999999999999999985211 0 011112223333334455566 6789999
Q ss_pred CCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 84 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
|||+..|.......++.+|++|+|+|+...-..+...-|.. ... .++|+++++||+|...
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH---hCCceEEEEecccchh
Confidence 99999999999999999999999999988544444444433 333 4799999999999754
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=5.8e-15 Score=123.49 Aligned_cols=145 Identities=19% Similarity=0.114 Sum_probs=91.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcchhc--
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQERYR-- 91 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~-- 91 (237)
++|+++|.+|+|||||+|+|++........+..+.......+.+++. +..+.+|||||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987743333233333322233444442 1468899999987653
Q ss_pred --hh---hHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHH------------------------------
Q 026548 92 --AV---TSAYYRGALGAVVVYDITKR----------QSFDHVARWVEEL------------------------------ 126 (237)
Q Consensus 92 --~~---~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~------------------------------ 126 (237)
.+ ....++.+|++++|+|+++. +.+.++..+..++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 22 22357899999999999851 2233322211111
Q ss_pred ----------H-------------------Hh-cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCC
Q 026548 127 ----------R-------------------AH-ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL 173 (237)
Q Consensus 127 ----------~-------------------~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 173 (237)
. .+ .....|+++++|+.|..-......+.+++++...+.+++.+||+
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 1 01 11359999999999864211233566778888889999999965
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.62 E-value=2e-16 Score=132.94 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=94.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEE---------------------------------------
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQ--------------------------------------- 66 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 66 (237)
...++|+|+|.+|+|||||+|+|++..+.+.....++....
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 44679999999999999999999998875322111110000
Q ss_pred ----------EEEEEEC-CEEEEEEEEeCCCcc-------------hhchhhHhhhcCCc-EEEEEEECCChhhHHHHHH
Q 026548 67 ----------TRTVTIN-GKIIKAQIWDTAGQE-------------RYRAVTSAYYRGAL-GAVVVYDITKRQSFDHVAR 121 (237)
Q Consensus 67 ----------~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~ 121 (237)
...+.+. .....+.||||||.. .+..+...++...+ ++++|++++..........
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0001110 002468899999953 34456666776555 5555666654322222222
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH--HHHHcC-CeEEEEcCCCCCCHHHHHHHHHH
Q 026548 122 WVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE--FAEDQG-LFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 122 ~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
+ +......+.|+++|+||+|+........+.... +....+ .+++++||+++.|++++++++.+
T Consensus 189 i---~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 V---AKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp H---HHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred H---HHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2 233333578999999999987543322221110 000123 24778999999999999988876
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.59 E-value=4.2e-16 Score=122.26 Aligned_cols=155 Identities=13% Similarity=0.052 Sum_probs=95.1
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC------CCCCcce--------eEEEEEEEECC----------------EE
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD------SKSTIGV--------EFQTRTVTING----------------KI 76 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~------~~~~~~~--------~~~~~~~~~~~----------------~~ 76 (237)
...+|+|+|.+|+|||||+++|........ ..+..+. ......+...+ ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 357899999999999999999986521110 0011000 00001111100 12
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA 156 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 156 (237)
+.+.+|||+|.-.... .+....+.+++|+|+.+.... ...+... .+.|+++|+||+|+........+..
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 4577999998511111 111256889999998764321 1111111 1478899999999865433456667
Q ss_pred HHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548 157 VEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 157 ~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 192 (237)
.+.+... +++++++||++|.|++++|++|.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 6666654 46899999999999999999998876443
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.57 E-value=1e-15 Score=128.73 Aligned_cols=104 Identities=12% Similarity=0.001 Sum_probs=69.4
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC--HH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS--AE 154 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~--~~ 154 (237)
+.+.||||||... .....+..+|++|+|+|....+....+..+ -.+.|++||+||+|+....... .+
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 5688999999433 233456899999999998765443222110 0246899999999986422110 11
Q ss_pred HHHHHHH-------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548 155 DAVEFAE-------DQGLFFSEASALNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 155 ~~~~~~~-------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 191 (237)
+..+... .++.+++.+||++|.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1111111 125789999999999999999999887755
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.56 E-value=3.1e-15 Score=132.22 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=82.8
Q ss_pred CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCc---CCCCCCcceeEEEEE-----EEEC-----------------C---
Q 026548 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFF---FDSKSTIGVEFQTRT-----VTIN-----------------G--- 74 (237)
Q Consensus 23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~-----~~~~-----------------~--- 74 (237)
......++|+|+|.+|+|||||+|+|++..+. ....++++....... +..+ +
T Consensus 60 ~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 60 ADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CC
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 44556789999999999999999999998864 222233211110000 0000 0
Q ss_pred ---EE---------EEEEEEeCCCcch-----------hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC
Q 026548 75 ---KI---------IKAQIWDTAGQER-----------YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD 131 (237)
Q Consensus 75 ---~~---------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~ 131 (237)
.. ..+.||||||... +...+..++..+|++|+|+|+++.........|+..+..
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--- 216 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--- 216 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---
Confidence 00 2478999999764 445667788999999999999875444555566655443
Q ss_pred CCCcEEEEEeCCCCCC
Q 026548 132 SSIRIILIGNKSDLVD 147 (237)
Q Consensus 132 ~~~p~vvv~nK~D~~~ 147 (237)
.+.|+++|+||+|+..
T Consensus 217 ~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVE 232 (550)
T ss_dssp CGGGEEEEEECGGGSC
T ss_pred cCCCEEEEEECCCccC
Confidence 4689999999999875
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.56 E-value=8.9e-15 Score=135.18 Aligned_cols=117 Identities=20% Similarity=0.222 Sum_probs=85.3
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC----------------CCCC--CcceeEEEEEEE------------ECCE
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF----------------DSKS--TIGVEFQTRTVT------------INGK 75 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~~ 75 (237)
....+|+|+|++++|||||+++|+...-.. .... |+........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 457899999999999999999998642110 0111 211111222222 1334
Q ss_pred EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146 (237)
Q Consensus 76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 146 (237)
.+.+.||||||+..|...+..+++.+|++|+|||+++..+++....|..... .++|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 6789999999999999999999999999999999999877777665654332 478999999999985
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.55 E-value=1.6e-14 Score=121.52 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=92.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC-------------------EEEEEEEEeCCCcch
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-------------------KIIKAQIWDTAGQER 89 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~ 89 (237)
++|+++|.+|+|||||+|+|.+........+..+.........+++ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5899999999999999999998653222222222222222222221 234688999999766
Q ss_pred hc----hh---hHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHH--------------------------
Q 026548 90 YR----AV---TSAYYRGALGAVVVYDITKR----------QSFDHVARWVEEL-------------------------- 126 (237)
Q Consensus 90 ~~----~~---~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~-------------------------- 126 (237)
.. .+ ....++.+|++++|+|+.+. +.+.++..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 43 12 23357899999999999751 1222211110000
Q ss_pred --------------------------------HHhc-CCCCcEEEEEeCCCCC--CC-cCCCHHHHHHHHHHcCCeEEEE
Q 026548 127 --------------------------------RAHA-DSSIRIILIGNKSDLV--DM-RAVSAEDAVEFAEDQGLFFSEA 170 (237)
Q Consensus 127 --------------------------------~~~~-~~~~p~vvv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
..+. ....|+++++||.|.. .. .....+.+.+++...+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 0000 1247999999999842 21 1234567778888889999999
Q ss_pred cCCCCCCHHH
Q 026548 171 SALNGDNVDT 180 (237)
Q Consensus 171 Sa~~~~gi~~ 180 (237)
||+...++.+
T Consensus 242 SAk~E~el~e 251 (368)
T 2dby_A 242 SARLEAELAE 251 (368)
T ss_dssp CHHHHHHHHT
T ss_pred echhHHHHHH
Confidence 9987554443
No 199
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.55 E-value=3.8e-17 Score=128.69 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=91.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEE------------EEEEEEC-CEE-----------------
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQ------------TRTVTIN-GKI----------------- 76 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 76 (237)
..++|+|+|.+|+|||||+++|+...+...+.+++..++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999977554322233322221 1111111 100
Q ss_pred --EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH
Q 026548 77 --IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE 154 (237)
Q Consensus 77 --~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~ 154 (237)
..+.++|++|.-... ..+-...+.++.++|......... .+... .+.|.+||+||+|+........+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 124455555521110 011123345566666432111100 00011 14678999999998764445667
Q ss_pred HHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548 155 DAVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQEIYG 191 (237)
Q Consensus 155 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 191 (237)
+..+++... +++++++||++|.|++++|+++.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 777777754 5789999999999999999999887654
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-13 Score=115.84 Aligned_cols=137 Identities=17% Similarity=0.100 Sum_probs=95.3
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhHhh
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTSAY 97 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~ 97 (237)
.....+|+++|.||+|||||+|+|++........+..+.+.....+.+++. +++|+||||..... ......
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 444679999999999999999999998766666678888888888888884 57799999954321 112345
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC--------CcCCCHHHHHHHHHHcCC
Q 026548 98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHA--DSSIRIILIGNKSDLVD--------MRAVSAEDAVEFAEDQGL 165 (237)
Q Consensus 98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~--------~~~~~~~~~~~~~~~~~~ 165 (237)
++.+|++++|+|++++... .......+.... ....|.++++||.|..+ ......++...+...+.+
T Consensus 147 i~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp HHHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred HHhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence 6899999999999986432 222222332221 14578889999999643 123456666666665554
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.52 E-value=3.9e-15 Score=124.76 Aligned_cols=102 Identities=12% Similarity=-0.001 Sum_probs=62.2
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA 156 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 156 (237)
+.+.|+||+|.... .......+|++++|+|+..+.....+.. .. ...|.++|+||+|+...... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~------~i--l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR------GI--IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH------HH--HhcCCEEEEeeecCCCchhH-HHHH
Confidence 45789999995322 2345678999999999987543222211 11 24688999999998642110 0011
Q ss_pred HHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 157 VEFAE----------DQGLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 157 ~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
.++.. .++.+++.+||+++.|+++++++|.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 12211 12457899999999999999999988764
No 202
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.47 E-value=5.4e-14 Score=127.36 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=97.6
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCccee----------------------------------------
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVE---------------------------------------- 64 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~---------------------------------------- 64 (237)
....++|+|+|.+++|||||+|+|++..+.+.....++..
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 3456799999999999999999999987743322111110
Q ss_pred -----------EEEEEEEECCEEEEEEEEeCCCcch-------------hchhhHhhh-cCCcEEEEEEECCChhhHHHH
Q 026548 65 -----------FQTRTVTINGKIIKAQIWDTAGQER-------------YRAVTSAYY-RGALGAVVVYDITKRQSFDHV 119 (237)
Q Consensus 65 -----------~~~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~ 119 (237)
.....+..++. ..+.|+||||... ...+...++ ..+|++++|+|++......+.
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred hcCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 00111111111 2478999999433 222334444 588999999999874333332
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH----cC-CeEEEEcCCCCCCHHHHHHHHHH
Q 026548 120 ARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED----QG-LFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 120 ~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
..++..+. ..+.|+++|+||+|+......... ... ... .+ .+++.+||++|.|++++++.+.+
T Consensus 207 l~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 207 LKIAKEVD---PQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHHC---TTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHH---hcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 22333332 257899999999998764433222 111 111 12 34677899999999998888776
No 203
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.47 E-value=1.3e-14 Score=130.48 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=78.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC--------CcCCC---C-------CCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNE--------FFFDS---K-------STIGVEFQTRTVTINGKIIKAQIWDTAGQER 89 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~--------~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 89 (237)
..+|+|+|+.++|||||..+|+... ..... + ..+++......+.+++ +.++|+|||||..
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~D 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHH
Confidence 4589999999999999999986321 10000 0 0111111122222333 6789999999999
Q ss_pred hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
|.......++.+|++|+|+|+...-..+....|.. ... .++|.++++||+|...
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~---~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRK---MGIPTIFFINKIDQNG 133 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHH---HTCSCEECCEECCSSS
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCeEEEEecccccc
Confidence 99999999999999999999987533333333333 333 2689999999999754
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.47 E-value=9.8e-13 Score=119.74 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=81.7
Q ss_pred CCceeeeEEEEcCCCCcHHHHHHHHhcCC--------CcC----------CCCCCcceeEEEEEEEEC-----CEEEEEE
Q 026548 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNE--------FFF----------DSKSTIGVEFQTRTVTIN-----GKIIKAQ 80 (237)
Q Consensus 24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~--------~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~ 80 (237)
+.++..+|+|+|+.++|||||..+|+... ... .....+++.-....+.+. ...+.++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 44677899999999999999999986321 110 111112222222223332 1347899
Q ss_pred EEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147 (237)
Q Consensus 81 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 147 (237)
|+|||||..|.......++-+|++|+|+|+...-..+...-|...... ++|.++++||+|...
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence 999999999999999999999999999999885444443344444333 799999999999743
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.46 E-value=6.4e-14 Score=117.08 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=64.9
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC--HH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS--AE 154 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~--~~ 154 (237)
+.+.||||||...... .....+|++++|+|++.......+.. .. .+.|.++|+||+|+....... .+
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 4688999999665433 24689999999999876533221111 00 136789999999986421110 01
Q ss_pred HHHHHHHHc-------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 155 DAVEFAEDQ-------GLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 155 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
+..+..... ..+++++||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 122212222 356899999999999999999988764
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.43 E-value=4.3e-13 Score=107.68 Aligned_cols=111 Identities=14% Similarity=-0.051 Sum_probs=66.8
Q ss_pred EEEEEEeCCCcchhchhhH------hhhcCCcEEEEEEECCChhhHHHHHHHHH-HHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548 77 IKAQIWDTAGQERYRAVTS------AYYRGALGAVVVYDITKRQSFDHVARWVE-ELRAHADSSIRIILIGNKSDLVDMR 149 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~vvv~nK~D~~~~~ 149 (237)
+.+.||||||......... ..+.. +++++++|+.............. ........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4688999999876543321 23455 88888888754222222211111 1111111368999999999986532
Q ss_pred CCCHHHHHHH----------------------------HHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 150 AVSAEDAVEF----------------------------AEDQG--LFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 150 ~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
+ .++..++ +..++ .+++++||+++.|+++++++|.+.+.
T Consensus 188 ~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 1 1111111 23333 47999999999999999998877653
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.37 E-value=9e-13 Score=108.29 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=79.6
Q ss_pred cchhchhhHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC-HHHHHHHHHHcC
Q 026548 87 QERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS-AEDAVEFAEDQG 164 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~-~~~~~~~~~~~~ 164 (237)
++++..+...++.++|++++|||++++. ++..+..|+..+.. .++|++||+||+|+.....+. .++..+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6777778888999999999999999986 88888899887665 479999999999997543222 345566677788
Q ss_pred CeEEEEcCCCCCCHHHHHHHHH
Q 026548 165 LFFSEASALNGDNVDTAFFRLL 186 (237)
Q Consensus 165 ~~~~~~Sa~~~~gi~~~~~~l~ 186 (237)
++++++||++|.|++++|..+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999997654
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.33 E-value=1.4e-12 Score=108.71 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=62.2
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA 156 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 156 (237)
+.+.|+||+|..... ......+|.+++++|....+..+.+..+ +. ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 468899999965432 2345789999999998654322111111 11 235577789999743221111122
Q ss_pred HHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548 157 VEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEIY 190 (237)
Q Consensus 157 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 190 (237)
+++... +..+++.+||+++.|++++++.|.+.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 233221 1456899999999999999988877653
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.30 E-value=9.7e-11 Score=99.05 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=64.0
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCC-cCCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcch
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEF-FFDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQER 89 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 89 (237)
....+|+++|++|+|||||+|+|++... .....|..+.+.....+.+++. +..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3467999999999999999999999776 4444466666666666667651 13578999999433
Q ss_pred -------hchhhHhhhcCCcEEEEEEECCC
Q 026548 90 -------YRAVTSAYYRGALGAVVVYDITK 112 (237)
Q Consensus 90 -------~~~~~~~~~~~~d~~ilv~d~~~ 112 (237)
........++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234556789999999999863
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=107.80 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=53.1
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcchh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQERY 90 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 90 (237)
...++|+++|.+|+|||||+|+|.+..+.....++.+.+.....+.+++. +..+.+|||||...+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34579999999999999999999998764444455555555555555442 235889999997765
Q ss_pred ch-------hhHhhhcCCcEEEEEEECCCh
Q 026548 91 RA-------VTSAYYRGALGAVVVYDITKR 113 (237)
Q Consensus 91 ~~-------~~~~~~~~~d~~ilv~d~~~~ 113 (237)
.. .+..+++.+|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 43 455678999999999998753
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.18 E-value=1.4e-11 Score=94.41 Aligned_cols=105 Identities=8% Similarity=-0.027 Sum_probs=68.8
Q ss_pred CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHH----Hhc-CCCCcEEEEEeCC-CCCCCcCCCHHHHHH
Q 026548 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR----AHA-DSSIRIILIGNKS-DLVDMRAVSAEDAVE 158 (237)
Q Consensus 85 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~----~~~-~~~~p~vvv~nK~-D~~~~~~~~~~~~~~ 158 (237)
+|+...+.+|..|+.++|++|||+|++|.+-.+ .+..+..+. ... ..++|++|++||. |+.+ ..+..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence 378899999999999999999999999864332 223222222 211 1579999999995 6754 455555544
Q ss_pred HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548 159 FAED----QGLFFSEASALNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 159 ~~~~----~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 192 (237)
.... ....+..|||++|+|+.+.++||...+..+
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 3322 234488899999999999999998766443
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.04 E-value=3.1e-10 Score=91.14 Aligned_cols=107 Identities=7% Similarity=-0.021 Sum_probs=72.9
Q ss_pred CCCcchhchhhHhhhcCCcEEEEEEECCChhhHH---HHHHHHHHHHHhc-CCCCcEEEEEeC-CCCCCCcCCCHHHHHH
Q 026548 84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFD---HVARWVEELRAHA-DSSIRIILIGNK-SDLVDMRAVSAEDAVE 158 (237)
Q Consensus 84 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~---~~~~~~~~~~~~~-~~~~p~vvv~nK-~D~~~~~~~~~~~~~~ 158 (237)
.+|++..+.+|..|+.++|++|||+|++|.+-++ .+......+.... ..++|++|++|| -|+.+ ..+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 4578899999999999999999999999865332 2221112221211 257999999997 57754 455555444
Q ss_pred HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548 159 FAED----QGLFFSEASALNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 159 ~~~~----~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 192 (237)
.... ....+..|||.+|+|+.+.++||.+.+..+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 3322 223488899999999999999999876443
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.86 E-value=8.1e-10 Score=96.28 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=85.1
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHh------cCCCcCC----CCCCc-----------ceeEEEEEE--------------
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFT------KNEFFFD----SKSTI-----------GVEFQTRTV-------------- 70 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~------~~~~~~~----~~~~~-----------~~~~~~~~~-------------- 70 (237)
.....|+|+|.+|+||||+++.|. +.+.... +.+.. +..+.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998 4332111 00100 011111000
Q ss_pred -EECCEEEEEEEEeCCCcchhch-hh---Hhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeC
Q 026548 71 -TINGKIIKAQIWDTAGQERYRA-VT---SAY--YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRI-ILIGNK 142 (237)
Q Consensus 71 -~~~~~~~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~nK 142 (237)
...+ +.+.|+||||...... ++ ... +..+|.+++|+|+......... ...+.. .+|+ +||+||
T Consensus 179 ~~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~----~~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD----KVDVASVIVTK 249 (504)
T ss_dssp HHHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH----HHCCCCEEEEC
T ss_pred HHHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh----hcCceEEEEeC
Confidence 0022 4678999999653221 11 111 2378999999999875432121 222222 2564 899999
Q ss_pred CCCCCCcCCCHHHHHHHHHHcCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q 026548 143 SDLVDMRAVSAEDAVEFAEDQGLFF------------------SEASALNGDN-VDTAFFRLLQE 188 (237)
Q Consensus 143 ~D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~~~~~l~~~ 188 (237)
+|...... .+.......+.|+ +.+|+..|.| +.++++++.+.
T Consensus 250 ~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 250 LDGHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TTSCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CccccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99764221 2333444555553 2368888988 88888777654
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.86 E-value=6.5e-09 Score=87.52 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=73.7
Q ss_pred CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH----HHH
Q 026548 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE----FAE 161 (237)
Q Consensus 86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~----~~~ 161 (237)
..+.|..++..+.+.+|++++|+|++++. ..|...+.... .+.|+++|+||+|+.... ...+...+ ++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 46789999999999999999999999853 34555565554 378999999999986532 33334433 356
Q ss_pred HcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 026548 162 DQGL---FFSEASALNGDNVDTAFFRLLQE 188 (237)
Q Consensus 162 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~ 188 (237)
..+. .++.+||++|.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6777 79999999999999999888654
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.81 E-value=2.6e-10 Score=96.12 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=80.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC------CCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hh
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN------EFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VT 94 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~ 94 (237)
.+|+++|.+|+|||||+|+|++. .......+.++. ....+.++. .+.++||||...... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL--DMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC--EEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE--eeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999976 222222233332 333344443 267999999543221 11
Q ss_pred Hhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC
Q 026548 95 SAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA 172 (237)
Q Consensus 95 ~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 172 (237)
..++ +..|.++++++....-.+..+.. +......+.|+++++||.|..+.... ......+.+..+..+...++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 2222 67899999999843211111100 11122256899999999998654332 22233445556666655555
Q ss_pred CCCCC
Q 026548 173 LNGDN 177 (237)
Q Consensus 173 ~~~~g 177 (237)
....+
T Consensus 313 ~~~~~ 317 (369)
T 3ec1_A 313 RYAAE 317 (369)
T ss_dssp GGTTT
T ss_pred hhhhh
Confidence 54433
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.81 E-value=7.9e-09 Score=88.04 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=68.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCC--CcceeEEEEEEEEC--CEEEEEEEEeCCCcchhc------------
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKS--TIGVEFQTRTVTIN--GKIIKAQIWDTAGQERYR------------ 91 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~------------ 91 (237)
.++++|+|++|+|||||++.|.+..+...... ..+.......+... +-...+.++|++|.....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 46799999999999999999998754321111 11111222222222 222367899998743210
Q ss_pred --hhh----Hhhh---------cC--CcE-EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC-
Q 026548 92 --AVT----SAYY---------RG--ALG-AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS- 152 (237)
Q Consensus 92 --~~~----~~~~---------~~--~d~-~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~- 152 (237)
..+ ..+. .. +|+ ++++.|....-+..++ ..+.... .++|+|+|+||+|.....+..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di----eilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL----VTMKKLD-SKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH----HHHHHTC-SCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH----HHHHHHh-hCCCEEEEEcchhccchHHHHH
Confidence 011 1110 11 233 5556666543333232 2222223 579999999999976432210
Q ss_pred -HHHHHHHHHHcCCeEEEEcC
Q 026548 153 -AEDAVEFAEDQGLFFSEASA 172 (237)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~Sa 172 (237)
...+.+.....|+.++.+|.
T Consensus 197 l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHcCCcEEecCC
Confidence 11122212234566666663
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.74 E-value=2.3e-10 Score=96.34 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=73.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcC-----CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh--------hH
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFF-----DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV--------TS 95 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~ 95 (237)
.+|+++|.+|+|||||+|+|.+..... ......+++.....+.+... +.++||||......+ ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999998763211 01111222223333444432 679999995432211 11
Q ss_pred hh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH-HHHHHcCCeEEEEc
Q 026548 96 AY--YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV-EFAEDQGLFFSEAS 171 (237)
Q Consensus 96 ~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~S 171 (237)
.+ ....+.++++++.........+.. +......+.|+++++||.|..+... .+.+. .+.+..+..+...+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~--~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK--LEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE--HHHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc--HHHHHHHHHHHhCCccCCCc
Confidence 11 257788899998743211111100 1111224689999999999876432 33333 34445665544444
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.71 E-value=1.3e-08 Score=82.13 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=70.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-------CCcceeEEEEEEEEC--CEEEEEEEEeCCCcchhc------h
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-------STIGVEFQTRTVTIN--GKIIKAQIWDTAGQERYR------A 92 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~------~ 92 (237)
.++++|+|+.|+|||||++.|.+...+.... ...........+... +-...+.++|++|..... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999998754332110 000000011111111 111257899999832110 0
Q ss_pred hhHh----------------------hhcCCcEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548 93 VTSA----------------------YYRGALGAVVVYDIT-KRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149 (237)
Q Consensus 93 ~~~~----------------------~~~~~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 149 (237)
.... .+..+++.++++|.. .+-...+ ...+..+.. . +++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence 0000 123468889999854 2222112 222233332 3 8999999999976432
Q ss_pred CC--CHHHHHHHHHHcCCeEEE
Q 026548 150 AV--SAEDAVEFAEDQGLFFSE 169 (237)
Q Consensus 150 ~~--~~~~~~~~~~~~~~~~~~ 169 (237)
+. ..+.+++.....++.++.
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 21 122334445566776554
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.71 E-value=1.3e-07 Score=80.41 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=79.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCC-CcceeEEE-EEEEECCEEEEEEEEeCCCcchhchhhHhh-----hcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQT-RTVTINGKIIKAQIWDTAGQERYRAVTSAY-----YRGA 101 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-----~~~~ 101 (237)
..++|+|++|||||||+|.|.+...+....- ..+..... ..+.-......+.+||++|..........+ +...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 4799999999999999999998543222111 11111000 011111111146799999854222112222 2334
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-------CCcCCCHHHHH----HHH----HHcC--
Q 026548 102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV-------DMRAVSAEDAV----EFA----EDQG-- 164 (237)
Q Consensus 102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~-------~~~~~~~~~~~----~~~----~~~~-- 164 (237)
+.+++ ++....+ -.++ .....+.. .+.|+++|.||.|+. +-.....+... ++. .+.+
T Consensus 150 ~~~~~-lS~G~~~-kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 150 DFFII-ISATRFK-KNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp SEEEE-EESSCCC-HHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCeEE-eCCCCcc-HHHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55554 7776311 1111 12222322 368999999999863 11122233333 332 1222
Q ss_pred -CeEEEEcC--CCCCCHHHHHHHHHHHH
Q 026548 165 -LFFSEASA--LNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 165 -~~~~~~Sa--~~~~gi~~~~~~l~~~i 189 (237)
..++.+|+ ..+.|++++.+.+.+.+
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 25788899 55566887776665543
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.68 E-value=2.7e-08 Score=80.67 Aligned_cols=102 Identities=16% Similarity=0.070 Sum_probs=70.5
Q ss_pred EEeCCCcc-hhchhhHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH
Q 026548 81 IWDTAGQE-RYRAVTSAYYRGALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV 157 (237)
Q Consensus 81 l~Dt~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~ 157 (237)
+...||+. .........+..+|++++|+|+.++.+.. .+..|+ .+.|.++|+||+|+.... ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 44578865 34455666789999999999999987654 333332 378999999999997521 122334
Q ss_pred HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548 158 EFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGA 192 (237)
Q Consensus 158 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 192 (237)
++....+++++.+||.++.|+++++..+.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 44455678999999999999999998887776543
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.67 E-value=1.8e-08 Score=84.89 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=71.8
Q ss_pred CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHH----HH
Q 026548 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEF----AE 161 (237)
Q Consensus 86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~----~~ 161 (237)
.++.|...+..+++.++++++|+|++++.+ .|...+.... .+.|+++|+||+|+... ....+...++ +.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence 478899999998899999999999998663 3444444443 37899999999998653 2233334433 55
Q ss_pred HcCC---eEEEEcCCCCCCHHHHHHHHHHHH
Q 026548 162 DQGL---FFSEASALNGDNVDTAFFRLLQEI 189 (237)
Q Consensus 162 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~i 189 (237)
..+. .++.+||++|.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 6676 689999999999999998886543
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.46 E-value=2.2e-07 Score=79.54 Aligned_cols=90 Identities=18% Similarity=0.107 Sum_probs=54.8
Q ss_pred EEEEEEeCCCcchhchh----hH--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRAV----TS--AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~----~~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
+.+.|+||+|....... .. .....+|.+++|+|+.......... ..+... -.+..||+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh---CCCeEEEEECCCCcc---
Confidence 45789999994432211 11 1223678999999998754332222 333332 235679999999753
Q ss_pred CCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 151 VSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
....+..+....+.|+.+++. |+++
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC--SSST
T ss_pred -cccHHHHHHHHHCCCEEEEEc--CCCh
Confidence 234466666778899887764 5433
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.46 E-value=1.4e-07 Score=76.40 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=36.7
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 88 (237)
...++|+++|.||+|||||+|+|.+....... .+.++.. ...+.++. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS--QQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeee--eEEEEeCC---CEEEEECcCcC
Confidence 34689999999999999999999987743332 2332222 22333433 46799999954
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.40 E-value=8.9e-08 Score=76.82 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=35.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 89 (237)
++++++|.+|+|||||+|+|.+....... ++.+.+.....+.++. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 69999999999999999999987753322 2222222222233332 467999999654
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.20 E-value=4.5e-06 Score=71.52 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=49.3
Q ss_pred EEEEEEeCCCcchhch-hh---Hh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCC
Q 026548 77 IKAQIWDTAGQERYRA-VT---SA--YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSI-R-IILIGNKSDLVDM 148 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~-~~---~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~vvv~nK~D~~~~ 148 (237)
+.+.|+||||...... +. .. .+..+|.+++|+|+...... ......+. ..+ | ..+|+||+|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~----~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQAKAFK----EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence 4578999999654221 11 11 12368999999998765321 11122222 235 5 7899999997531
Q ss_pred cCCCHHHHHHHHHHcCCeEEEEc
Q 026548 149 RAVSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~S 171 (237)
...+..+....+.++..++
T Consensus 254 ----~g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFIG 272 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEEC
T ss_pred ----hHHHHHHHHHHCCCEEEee
Confidence 2234556677787766553
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.17 E-value=1e-06 Score=78.18 Aligned_cols=65 Identities=17% Similarity=0.084 Sum_probs=39.9
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCC-cceeEEEEEE--EE-CCEEEEEEEEeCCCcch
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST-IGVEFQTRTV--TI-NGKIIKAQIWDTAGQER 89 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~~ 89 (237)
....++|+|+|.||+|||||+|+|.+.........+ .+.+.....+ .+ ......+.|+||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456789999999999999999999988743221111 1111111111 11 11123578999999543
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.14 E-value=9.3e-07 Score=70.86 Aligned_cols=91 Identities=18% Similarity=0.102 Sum_probs=61.7
Q ss_pred CCCcchh-chhhHhhhcCCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH
Q 026548 84 TAGQERY-RAVTSAYYRGALGAVVVYDITKRQSFDH--VARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFA 160 (237)
Q Consensus 84 t~G~~~~-~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~ 160 (237)
.||+... .......+.++|++|+|+|+.++.+... +. + . ++|.++|+||+|+.... ..+...++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-l-------l--~k~~iivlNK~DL~~~~--~~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-F-------S--RKETIILLNKVDIADEK--TTKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-C-------T--TSEEEEEEECGGGSCHH--HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-h-------c--CCCcEEEEECccCCCHH--HHHHHHHHH
Confidence 3665432 2345667899999999999998766542 21 1 1 68999999999997521 122334445
Q ss_pred HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548 161 EDQGLFFSEASALNGDNVDTAFFRLLQ 187 (237)
Q Consensus 161 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 187 (237)
+..+.++ .+||.++.|+++++..+..
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 5668888 9999999999988876644
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.13 E-value=3.9e-07 Score=77.94 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=55.5
Q ss_pred EEEEEEeCCCcch--hch-h---hHh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548 77 IKAQIWDTAGQER--YRA-V---TSA--YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148 (237)
Q Consensus 77 ~~~~l~Dt~G~~~--~~~-~---~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 148 (237)
+.+.|+||||... ... + ... ..-..|.+++|+|+........+ ...+... -.+..||+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence 4577999999543 111 1 111 11256899999999865433222 2333332 245789999999753
Q ss_pred cCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNV 178 (237)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 178 (237)
....+..+....+.|+.+++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 344566777778999888874 6554
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.06 E-value=5e-06 Score=67.79 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=56.9
Q ss_pred EEEEEEeCCCcch--hch-hhH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 026548 77 IKAQIWDTAGQER--YRA-VTS-----AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVD 147 (237)
Q Consensus 77 ~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 147 (237)
+.+.|+||||... ... +.. ..+..+|.+++|+|+..... .......+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 4578999999765 221 211 12457899999999865322 1122222322 355 678999999643
Q ss_pred CcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
....+..+....+.|+..++ .|.++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 23456677788899988876 5666654
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.98 E-value=1.7e-06 Score=70.75 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=60.0
Q ss_pred hhhHhhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHHHcCCeEE
Q 026548 92 AVTSAYYRGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAEDQGLFFS 168 (237)
Q Consensus 92 ~~~~~~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~ 168 (237)
.+.+..+.++|.+++|+|+.++.. ...+.+++..... .++|.+||+||+|+...... ..+...++....|.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 344456889999999999997643 3344444433322 47899999999999763210 12333444455688999
Q ss_pred EEcCCCCCCHHHHHH
Q 026548 169 EASALNGDNVDTAFF 183 (237)
Q Consensus 169 ~~Sa~~~~gi~~~~~ 183 (237)
.+||.++.|+++++.
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999998888776554
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.98 E-value=2e-05 Score=70.53 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNEFF 54 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~~~ 54 (237)
..|+|+|+.|||||||++.+.+...+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 45999999999999999999987533
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.77 E-value=5e-05 Score=63.29 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=55.3
Q ss_pred hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC-CHHHHHHHHHHcCCeEEEEcCCC
Q 026548 97 YYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV-SAEDAVEFAEDQGLFFSEASALN 174 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 174 (237)
.+.++|.+++|.+. .+. +...+.+++-.... .++|.+||+||+|+...... ..+.........|++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46889999988665 444 33444444443333 36888999999999753210 01122333446788999999999
Q ss_pred CCCHHHHHHH
Q 026548 175 GDNVDTAFFR 184 (237)
Q Consensus 175 ~~gi~~~~~~ 184 (237)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999987654
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.71 E-value=2.8e-05 Score=64.21 Aligned_cols=90 Identities=13% Similarity=0.001 Sum_probs=53.4
Q ss_pred EEEEeCCCcchhchhh-Hh-----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC
Q 026548 79 AQIWDTAGQERYRAVT-SA-----YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS 152 (237)
Q Consensus 79 ~~l~Dt~G~~~~~~~~-~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 152 (237)
+.++|++|........ .. ..-..|..++++|..... ++......+.... -..+|++||.|... .
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a----~ 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA----R 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----C
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----c
Confidence 5589999964322211 11 112468889999976543 2223333333322 23478899998532 2
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 153 AEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
...+..+....+.|+..++ +|.++++
T Consensus 284 ~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 3346677888899988887 6766654
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.63 E-value=4.3e-05 Score=65.54 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.6
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.+..-|.|+|++++|||||+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45677999999999999999999863
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.62 E-value=2.6e-06 Score=73.88 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=61.7
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch--hchhh--------Hh
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--YRAVT--------SA 96 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~--------~~ 96 (237)
....|+++|.+||||||+.++|....... ..++..+..........+......+||..|.+. ....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999987543211 111111000000000011112235789888632 23332 45
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q 026548 97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG 140 (237)
Q Consensus 97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~ 140 (237)
++...++.++|+|.++. +......|+..+... +.+++++-
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 56667888999999987 455556676666553 34454444
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.27 E-value=0.0004 Score=59.45 Aligned_cols=82 Identities=13% Similarity=0.045 Sum_probs=46.2
Q ss_pred EEEEEEeCCCcchhch-hhH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCc
Q 026548 77 IKAQIWDTAGQERYRA-VTS-----AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMR 149 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~ 149 (237)
+.+.|+||||...... +.. ..+...|.+++|+|+......- .....+.. .++ .-||+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~----~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE----ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc----cCCCeEEEEecCCCCccH
Confidence 4578999999654322 111 1244788999999987543221 22222322 234 34789999974321
Q ss_pred CCCHHHHHHHHHHcCCeEEE
Q 026548 150 AVSAEDAVEFAEDQGLFFSE 169 (237)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ 169 (237)
..+..+....+.|+..
T Consensus 257 ----g~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIKF 272 (433)
T ss_dssp ----THHHHHHHHHCCCEEE
T ss_pred ----HHHHHHHHHHCCCeEE
Confidence 2344556666766443
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.16 E-value=0.00021 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.637 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
+++++|++|||||||++.+.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887643
No 238
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.07 E-value=0.00027 Score=58.86 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999998654
No 239
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.06 E-value=0.00082 Score=54.75 Aligned_cols=22 Identities=55% Similarity=0.751 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++++|++|+|||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 58999999999999999998 54
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.04 E-value=0.00019 Score=58.58 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-.++|+|++|+|||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 378999999999999999998764
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.03 E-value=0.0003 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.97 E-value=0.00036 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.++|+|++|||||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999998763
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.93 E-value=0.00046 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.|+|+|++|||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.89 E-value=0.00046 Score=52.43 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-|+|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999865
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.87 E-value=0.00047 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 026548 31 VVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~ 51 (237)
++|+|+.|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999864
No 246
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.86 E-value=0.00052 Score=50.96 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=17.8
Q ss_pred eEEEEcCCCCcHHHHHHHHh
Q 026548 30 KVVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~ 49 (237)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999754
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.86 E-value=0.00073 Score=51.48 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-|+|+|++|+|||||++.|...
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999864
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.81 E-value=0.00058 Score=52.29 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++|+|+.|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999987654
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.78 E-value=0.00064 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++|+|+.|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998754
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.75 E-value=0.00066 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-.++|+|+.|||||||++.|.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999988743
No 251
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.72 E-value=0.00078 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++++|+.|||||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999988755
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.71 E-value=0.0008 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-|+|+|++|||||||++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58999999999999999998654
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.68 E-value=0.00084 Score=51.39 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.1
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
....|+|+|++|||||||++.|.+.-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999887643
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.68 E-value=0.0075 Score=51.38 Aligned_cols=85 Identities=16% Similarity=0.027 Sum_probs=48.3
Q ss_pred EEEEEEeCCCcchhch-hhH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRA-VTS-----AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
+.+.|+||||...... +.. ...-..|.+++|+|+.... +.......+.... ....||+||.|...
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~l---~i~GVIlTKlD~~~--- 251 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV---GVTGLVLTKLDGDA--- 251 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHT---CCCEEEEESGGGCS---
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhcC---CceEEEEeCcCCcc---
Confidence 4577999999543321 111 1123688899999986432 2222223333221 12467899998642
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 026548 151 VSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~S 171 (237)
....+..+....+.|+.++.
T Consensus 252 -~~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 252 -RGGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp -SCHHHHHHHHHHCCCEEEEE
T ss_pred -cHHHHHHHHHHHCCCEEEEe
Confidence 12245566777888876665
No 255
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.66 E-value=0.00092 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999988765
No 256
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.66 E-value=0.001 Score=50.23 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 026548 31 VVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~ 51 (237)
|+|+||+||||+||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999754
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.63 E-value=0.001 Score=48.81 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 026548 30 KVVVIGDSAVGKSQILSRF 48 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l 48 (237)
-|+|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.63 E-value=0.00097 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.|+|+|++||||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988754
No 259
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.62 E-value=0.00045 Score=54.38 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.0
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
...+|+|+|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998863
No 260
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.61 E-value=0.0011 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++++|+.|||||||++.+.+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988764
No 261
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.61 E-value=0.00098 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-.|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999987654
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.60 E-value=0.001 Score=50.00 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
-++|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.60 E-value=0.0011 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998753
No 264
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.57 E-value=0.0013 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.56 E-value=0.0012 Score=48.54 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998643
No 266
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.56 E-value=0.0013 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++++|+.|||||||++.+.+..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998764
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.56 E-value=0.0012 Score=50.36 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...|+|+|+.|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999988764
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.54 E-value=0.0012 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
-.|+|+|++|||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 269
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.54 E-value=0.0014 Score=51.46 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHh
Q 026548 29 FKVVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~ 49 (237)
-.|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999988
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.54 E-value=0.0013 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988764
No 271
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.51 E-value=0.0013 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++|+|+.|||||||++.+.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 272
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.50 E-value=0.0014 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++|+|+.|||||||++.+.+..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988764
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.50 E-value=0.0014 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988764
No 274
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.48 E-value=0.0014 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988764
No 275
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.48 E-value=0.0015 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998764
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.46 E-value=0.0015 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 277
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.45 E-value=0.0016 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988764
No 278
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.45 E-value=0.0012 Score=49.15 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.-.++++|++|+|||||++.+.+.-
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999887643
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.44 E-value=0.0016 Score=51.94 Aligned_cols=23 Identities=48% Similarity=0.518 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999988764
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.44 E-value=0.0017 Score=51.06 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988764
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.43 E-value=0.0016 Score=51.43 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988764
No 282
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.43 E-value=0.0017 Score=49.79 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.43 E-value=0.0016 Score=51.16 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988764
No 284
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.42 E-value=0.0017 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998764
No 285
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.41 E-value=0.0018 Score=49.70 Aligned_cols=21 Identities=24% Similarity=0.397 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.40 E-value=0.0017 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988764
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.40 E-value=0.0021 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
-.|+|+|++||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 288
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.40 E-value=0.0018 Score=51.22 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.++|+|+.|||||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999986
No 289
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.39 E-value=0.0016 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
..|+|+|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988643
No 290
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.38 E-value=0.0018 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.|+|.|.+||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998753
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.38 E-value=0.0016 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.++|+|+.|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6999999999999999998763
No 292
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.38 E-value=0.0017 Score=52.95 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999988754
No 293
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.37 E-value=0.0022 Score=47.65 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
...|++.|.+||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34799999999999999998863
No 294
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.36 E-value=0.0019 Score=51.56 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.++|+|+.|||||||++.+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999986
No 295
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.36 E-value=0.0019 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999998753
No 296
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.35 E-value=0.0069 Score=43.33 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999887654
No 297
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.35 E-value=0.0022 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
.++++|++|+|||||+|.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987654
No 298
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.34 E-value=0.0019 Score=49.06 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
+|+|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
No 299
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.34 E-value=0.0019 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999988764
No 300
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.34 E-value=0.0019 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988764
No 301
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.33 E-value=0.0022 Score=48.57 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
-.|+|+|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 302
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.33 E-value=0.0025 Score=48.50 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 303
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.33 E-value=0.0021 Score=48.02 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 304
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.32 E-value=0.002 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988764
No 305
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.32 E-value=0.0013 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=15.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHh-cC
Q 026548 29 FKVVVIGDSAVGKSQILSRFT-KN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~-~~ 51 (237)
--|+|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999998 54
No 306
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.31 E-value=0.0021 Score=50.19 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHh
Q 026548 30 KVVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~ 49 (237)
-++|+|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58899999999999999887
No 307
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.30 E-value=0.0031 Score=48.74 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
-|+|+|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999988764
No 308
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.30 E-value=0.0021 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999988764
No 309
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.30 E-value=0.0026 Score=47.62 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999988754
No 310
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.29 E-value=0.0013 Score=50.48 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.++|+|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999876
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.28 E-value=0.0032 Score=47.93 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...|+|+|++|||||||++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998764
No 312
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.28 E-value=0.0021 Score=47.89 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-++|+|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 36899999999999999999864
No 313
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.28 E-value=0.0028 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.28 E-value=0.0022 Score=49.46 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 315
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.27 E-value=0.0021 Score=48.81 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.--|+|+|++||||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999988654
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.26 E-value=0.0025 Score=48.15 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
No 317
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.25 E-value=0.0024 Score=47.71 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 318
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.25 E-value=0.002 Score=49.62 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-++|+|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 319
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.22 E-value=0.0039 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.6
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
....|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
No 320
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.22 E-value=0.0029 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 321
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.21 E-value=0.0027 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988764
No 322
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.21 E-value=0.0028 Score=48.60 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.|+|+|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988753
No 323
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.20 E-value=0.0028 Score=47.26 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 324
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.18 E-value=0.0029 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=21.1
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhc
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
....+.|+|.|++||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 33457899999999999999998855
No 325
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.17 E-value=0.003 Score=48.64 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 326
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.16 E-value=0.0033 Score=51.40 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=22.6
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
....-|+|+|++|||||||++.|.+.-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345679999999999999999887643
No 327
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.16 E-value=0.0028 Score=46.86 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.16 E-value=0.0033 Score=47.05 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998754
No 329
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.16 E-value=0.0029 Score=48.48 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 330
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.15 E-value=0.0035 Score=47.47 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
...|+|.|.+||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 331
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.12 E-value=0.0026 Score=50.96 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 026548 31 VVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~ 51 (237)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998764
No 332
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.12 E-value=0.0035 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.12 E-value=0.0026 Score=53.14 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=25.3
Q ss_pred CCCCCce--eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 21 IPDKIDY--VFKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 21 ~~~~~~~--~~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.+..... .-+++|+|++|||||||++.|.+..
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444 5689999999999999999988753
No 334
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.11 E-value=0.0016 Score=48.50 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.|+|+|++|||||||++.|.+.-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987654
No 335
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.10 E-value=0.0023 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.|.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999887654
No 336
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.10 E-value=0.0017 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-.++++|++|+|||+|++.+.+.-
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999987644
No 337
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.07 E-value=0.0029 Score=49.68 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.0
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
...-|+|+|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998876
No 338
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.07 E-value=0.014 Score=50.00 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=38.6
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhc------------------CCCcCC---CCCCcceeEEEEEEEE---CCEEEEEE
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTK------------------NEFFFD---SKSTIGVEFQTRTVTI---NGKIIKAQ 80 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~------------------~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~ 80 (237)
..+..=|.|+|+.++|||+|+|.|+. ..|... ...|.|+-.-...+.+ ++..+.+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 34567788999999999999995541 122211 1123333222112222 56667899
Q ss_pred EEeCCCcc
Q 026548 81 IWDTAGQE 88 (237)
Q Consensus 81 l~Dt~G~~ 88 (237)
|+||.|..
T Consensus 144 llDTEG~~ 151 (457)
T 4ido_A 144 LMDTQGTF 151 (457)
T ss_dssp EEEECCBT
T ss_pred EEeccCCC
Confidence 99999943
No 339
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.06 E-value=0.0046 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 340
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.05 E-value=0.0031 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999988764
No 341
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.04 E-value=0.0032 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
-++|+|+.|||||||++.+.+...
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 478999999999999999988653
No 342
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.04 E-value=0.0031 Score=49.62 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998864
No 343
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.03 E-value=0.0036 Score=48.46 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHh
Q 026548 29 FKVVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~ 49 (237)
..|+|.|.+||||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999885
No 344
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.03 E-value=0.0039 Score=50.30 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..-|+|.|++||||||+.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.01 E-value=0.0034 Score=48.35 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.01 E-value=0.0041 Score=45.50 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 347
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.00 E-value=0.0031 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.|+|+|+.|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999998753
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.99 E-value=0.005 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998854
No 349
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.99 E-value=0.0043 Score=45.89 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988654
No 350
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.98 E-value=0.0038 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++|+|+.|||||||++.+.+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998765
No 351
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.97 E-value=0.0039 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++|+|+.|||||||++.+.+..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999998765
No 352
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.96 E-value=0.0043 Score=46.88 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999998764
No 353
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.95 E-value=0.0047 Score=46.58 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...|+|.|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999998765
No 354
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.95 E-value=0.0042 Score=48.01 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 355
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.94 E-value=0.004 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++++|+.|||||||++.+.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998764
No 356
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.93 E-value=0.0037 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.|.+.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999988754
No 357
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.93 E-value=0.0041 Score=46.64 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 358
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.93 E-value=0.0042 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++++|+.|||||||++.+.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998765
No 359
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.91 E-value=0.0042 Score=52.11 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++|+|+.|||||||++.+.+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998765
No 360
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.90 E-value=0.0039 Score=51.99 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-.++|+|+.|||||||++.|.+.-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 379999999999999999998754
No 361
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.90 E-value=0.0051 Score=50.44 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.8
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhc
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
....+-|+|.|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34467799999999999999998754
No 362
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.88 E-value=0.0038 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.5
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...-|+|+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988764
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.88 E-value=0.0052 Score=46.63 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=20.8
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
...-|+|+|++|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 364
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.87 E-value=0.002 Score=49.15 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 365
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.019 Score=47.20 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
+++++|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998876
No 366
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.87 E-value=0.0045 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 367
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.87 E-value=0.0044 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++|+|+.|||||||++.+.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998765
No 368
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.86 E-value=0.0059 Score=49.36 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.1
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhc
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
.....|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999987754
No 369
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.86 E-value=0.0046 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++++|+.|||||||++.+.+..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999998764
No 370
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.85 E-value=0.0052 Score=45.53 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
..++|+|.+|||||||+.+|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998753
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.84 E-value=0.0047 Score=46.17 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.83 E-value=0.0049 Score=47.37 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 373
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.83 E-value=0.005 Score=46.26 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.82 E-value=0.005 Score=45.18 Aligned_cols=21 Identities=10% Similarity=0.395 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 375
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.81 E-value=0.0042 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999998764
No 376
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.80 E-value=0.0051 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 377
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.79 E-value=0.0043 Score=52.02 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.|+|+|++|||||||++.|.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999998763
No 378
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.79 E-value=0.0046 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.|+++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999998864
No 379
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.79 E-value=0.005 Score=48.67 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998853
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.78 E-value=0.005 Score=45.82 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 381
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.78 E-value=0.0038 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++++|+.|||||||++.+.+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998765
No 382
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.77 E-value=0.0077 Score=44.93 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...|+|+|.+||||||+.+.|...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 356999999999999999988653
No 383
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.76 E-value=0.0046 Score=50.31 Aligned_cols=89 Identities=15% Similarity=0.038 Sum_probs=48.9
Q ss_pred EEEEeCCCcchhch------------hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548 79 AQIWDTAGQERYRA------------VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146 (237)
Q Consensus 79 ~~l~Dt~G~~~~~~------------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 146 (237)
+.+.||+|...... ....+....+.+++++|.......-. .+..+.... + ..+|++||.|..
T Consensus 187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~---~~~~~~~~~--~-~t~iivTh~d~~ 260 (304)
T 1rj9_A 187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLE---QAKKFHEAV--G-LTGVIVTKLDGT 260 (304)
T ss_dssp EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHH---HHHHHHHHH--C-CSEEEEECTTSS
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHH---HHHHHHHHc--C-CcEEEEECCccc
Confidence 55889999532211 01122345677888999876433222 223332221 1 247889999864
Q ss_pred CCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
.. ...+..+....+.|+..+. .|+.++
T Consensus 261 a~----gg~~l~i~~~~~~pi~~ig--~Ge~~~ 287 (304)
T 1rj9_A 261 AK----GGVLIPIVRTLKVPIKFVG--VGEGPD 287 (304)
T ss_dssp CC----CTTHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred cc----ccHHHHHHHHHCCCeEEEe--CCCChh
Confidence 32 1235566677888877775 444433
No 384
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.73 E-value=0.0054 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 385
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.73 E-value=0.0058 Score=45.37 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999854
No 386
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.72 E-value=0.0051 Score=50.04 Aligned_cols=82 Identities=17% Similarity=0.091 Sum_probs=45.0
Q ss_pred EEEEeCCCcchhchhh------------HhhhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548 79 AQIWDTAGQERYRAVT------------SAYYRGALGAVVVYDITKR-QSFDHVARWVEELRAHADSSIRIILIGNKSDL 145 (237)
Q Consensus 79 ~~l~Dt~G~~~~~~~~------------~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 145 (237)
..++|+.|........ ..+....+-+++++|.+.. +....+ ..+... .++ .+|++||.|.
T Consensus 186 ~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~----~~~~~~--~g~-t~iiiThlD~ 258 (302)
T 3b9q_A 186 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA----REFNEV--VGI-TGLILTKLDG 258 (302)
T ss_dssp EEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHH----HHHHHH--TCC-CEEEEECCSS
T ss_pred chHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHH----HHHHHh--cCC-CEEEEeCCCC
Confidence 4588999854322111 1122456667888896543 222222 223222 122 4677889875
Q ss_pred CCCcCCCHHHHHHHHHHcCCeEEEEc
Q 026548 146 VDMRAVSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~S 171 (237)
.. ....+..++...+.++..+.
T Consensus 259 ~~----~~g~~l~~~~~~~~pi~~i~ 280 (302)
T 3b9q_A 259 SA----RGGCVVSVVEELGIPVKFIG 280 (302)
T ss_dssp CS----CTHHHHHHHHHHCCCEEEEE
T ss_pred CC----ccChheehHHHHCCCEEEEe
Confidence 32 34466777888888876664
No 387
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.71 E-value=0.0064 Score=47.25 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
...|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 388
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.70 E-value=0.0049 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-|+|+|+.|||||||++.+.+.-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999987643
No 389
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.70 E-value=0.0042 Score=49.02 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=20.9
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
....|+++|++||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 390
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.68 E-value=0.0054 Score=47.15 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-++|+|++|+|||||++.+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 391
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.67 E-value=0.0063 Score=48.01 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHh
Q 026548 29 FKVVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~ 49 (237)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999887
No 392
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.66 E-value=0.0054 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|++|||||||++.|.+.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999998644
No 393
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.65 E-value=0.0045 Score=48.07 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.7
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...-|+|.|+.|||||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999998765
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.64 E-value=0.0065 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
..|+|.|.+||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988653
No 395
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.64 E-value=0.0059 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|||||||++.+.+-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998753
No 396
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.64 E-value=0.0072 Score=44.26 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998754
No 397
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.63 E-value=0.0092 Score=47.90 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHh
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~ 49 (237)
.....|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999886
No 398
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.61 E-value=0.0052 Score=45.31 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988654
No 399
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.61 E-value=0.0041 Score=46.11 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=15.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999863
No 400
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.59 E-value=0.0066 Score=47.82 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
..|+++|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.58 E-value=0.0038 Score=51.96 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++++|+.|||||||++.+.+..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998765
No 402
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.57 E-value=0.0081 Score=46.04 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 403
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.55 E-value=0.0077 Score=46.44 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988653
No 404
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.54 E-value=0.0071 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
..+++.|++|+|||+|++.+...-
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999887543
No 405
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.44 E-value=0.0092 Score=43.11 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 026548 31 VVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~ 49 (237)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999875
No 406
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.42 E-value=0.007 Score=48.78 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++|+|++|+|||||+..+.+.-
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 48899999999999999887654
No 407
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.42 E-value=0.006 Score=46.62 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888764
No 408
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.41 E-value=0.049 Score=45.37 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 026548 31 VVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~ 49 (237)
.+|+|+.|||||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5589999999999999976
No 409
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.0068 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-.++|+|+.|||||||++.|.+.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 37999999999999999998764
No 410
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.39 E-value=0.0093 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
.+.|+|.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 411
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.017 Score=44.76 Aligned_cols=28 Identities=14% Similarity=-0.013 Sum_probs=22.7
Q ss_pred CceeeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 25 IDYVFKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
..+.+-|++-|+++.||++|++++.+..
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhccc
Confidence 4455666666999999999999999874
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.37 E-value=0.0087 Score=45.69 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|+|.+||||||+.+.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 413
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.35 E-value=0.0094 Score=46.34 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...-|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998754
No 414
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.35 E-value=0.0083 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998874
No 415
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.35 E-value=0.0083 Score=45.74 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 416
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.35 E-value=0.029 Score=42.17 Aligned_cols=85 Identities=14% Similarity=-0.021 Sum_probs=55.2
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcCCCHH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA--DSSIRIILIGNKSDLVDMRAVSAE 154 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~ 154 (237)
+.+.|+|+|+.. .......+..+|.+|+++..+... ..+...++.+.... ..+.++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 467899999865 334455677799999999876543 55666666665543 245678999999985321 123
Q ss_pred HHHHHHHHcCCeEE
Q 026548 155 DAVEFAEDQGLFFS 168 (237)
Q Consensus 155 ~~~~~~~~~~~~~~ 168 (237)
+..++.+..+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 45555555665544
No 417
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.34 E-value=0.0081 Score=50.02 Aligned_cols=82 Identities=16% Similarity=0.071 Sum_probs=45.6
Q ss_pred EEEEeCCCcchhchh------------hHhhhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548 79 AQIWDTAGQERYRAV------------TSAYYRGALGAVVVYDITKR-QSFDHVARWVEELRAHADSSIRIILIGNKSDL 145 (237)
Q Consensus 79 ~~l~Dt~G~~~~~~~------------~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 145 (237)
..++|+.|....... ...+....+-+++++|.+.. +....+ ..+.... + ..+|++||.|.
T Consensus 243 ~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~----~~~~~~~--g-~t~iiiThlD~ 315 (359)
T 2og2_A 243 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA----REFNEVV--G-ITGLILTKLDG 315 (359)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH----HHHHHHT--C-CCEEEEESCTT
T ss_pred HHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH----HHHHHhc--C-CeEEEEecCcc
Confidence 458899985432211 11223456777888896543 222222 2232221 2 24677899875
Q ss_pred CCCcCCCHHHHHHHHHHcCCeEEEEc
Q 026548 146 VDMRAVSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~S 171 (237)
.. ....+..++...+.|+..+.
T Consensus 316 ~~----~gG~~lsi~~~~~~pI~~ig 337 (359)
T 2og2_A 316 SA----RGGCVVSVVEELGIPVKFIG 337 (359)
T ss_dssp CS----CTHHHHHHHHHHCCCEEEEE
T ss_pred cc----cccHHHHHHHHhCCCEEEEe
Confidence 32 24456677778888877765
No 418
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.32 E-value=0.0086 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998875
No 419
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.32 E-value=0.009 Score=47.17 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 420
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.29 E-value=0.01 Score=42.44 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3569999999999999999987643
No 421
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.24 E-value=0.0098 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 422
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.24 E-value=0.0089 Score=51.80 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=50.4
Q ss_pred EEEEEeCCCcchhch-h------hHhhh-----cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548 78 KAQIWDTAGQERYRA-V------TSAYY-----RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145 (237)
Q Consensus 78 ~~~l~Dt~G~~~~~~-~------~~~~~-----~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 145 (237)
.+.|+||+|...... + +.... ...+-++|++|++.....- .....+.... + ...||+||.|.
T Consensus 377 DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---~~ak~f~~~~--~-itgvIlTKLD~ 450 (503)
T 2yhs_A 377 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---SQAKLFHEAV--G-LTGITLTKLDG 450 (503)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH---HHHHHHHHHT--C-CSEEEEECGGG
T ss_pred CEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH---HHHHHHHhhc--C-CCEEEEEcCCC
Confidence 467999999532211 1 11111 1246788999976543211 2223333321 2 23578999985
Q ss_pred CCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 180 (237)
.. ....+..++..++.++.++. +|.++++
T Consensus 451 ta----kgG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 451 TA----KGGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp CS----CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred cc----cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 32 22356677778888877765 5555544
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.22 E-value=0.0091 Score=50.08 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999885
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.18 E-value=0.0068 Score=49.62 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
--++|+|..|||||||++.|.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999998653
No 425
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.15 E-value=0.014 Score=47.13 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...+++.|+||+|||+|++++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456788899999999999988754
No 426
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.12 E-value=0.011 Score=47.53 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.|++.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 427
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.09 E-value=0.012 Score=46.93 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998654
No 428
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.08 E-value=0.013 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
=.++|+|+.|||||||++.|.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 429
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.07 E-value=0.014 Score=45.84 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
...|++.|++|+|||+|++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999875
No 430
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.07 E-value=0.016 Score=43.83 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.4
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
+...|+|.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999988654
No 431
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.06 E-value=0.013 Score=44.94 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 432
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.04 E-value=0.016 Score=46.73 Aligned_cols=24 Identities=13% Similarity=0.338 Sum_probs=20.1
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 355799999999999999986654
No 433
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.04 E-value=0.013 Score=44.28 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.+++.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988653
No 434
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.01 E-value=0.012 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
-++|+|+.|||||||++.|.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998754
No 435
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.96 E-value=0.012 Score=47.66 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-.|++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999998754
No 436
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.96 E-value=0.016 Score=45.11 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=19.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..+++|+|+|||||||+.+.|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 45899999999999999988754
No 437
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.96 E-value=0.012 Score=50.92 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
-++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998865
No 438
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.90 E-value=0.014 Score=51.87 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999988754
No 439
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.90 E-value=0.048 Score=44.57 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
..|+|.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999998644
No 440
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.89 E-value=0.013 Score=47.88 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.+++.|++|+|||+|++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999988754
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.86 E-value=0.014 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
+++|+|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999988764
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.019 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
.++|+|+.|+|||||++.|.+...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 589999999999999999987643
No 443
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.81 E-value=0.018 Score=44.78 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.7
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
....|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 444
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.80 E-value=0.016 Score=51.51 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988764
No 445
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.79 E-value=0.014 Score=46.60 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 446
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.78 E-value=0.024 Score=44.95 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=22.2
Q ss_pred ceeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 26 DYVFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 26 ~~~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999998764
No 447
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.69 E-value=0.018 Score=43.48 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 448
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.67 E-value=0.018 Score=51.42 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|+|+.|+|||||++.|.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999998754
No 449
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.62 E-value=0.018 Score=50.67 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
.++|+|+.|||||||++.|.+...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987653
No 450
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.59 E-value=0.016 Score=47.60 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 451
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.59 E-value=0.019 Score=51.29 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
.++|+|+.|+|||||++.|.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999988653
No 452
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.59 E-value=0.02 Score=50.33 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
.++|+|+.|||||||++.|.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998653
No 453
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.58 E-value=0.017 Score=47.88 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.++|.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998754
No 454
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.58 E-value=0.027 Score=47.79 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
..-|+|+|.+||||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999998753
No 455
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.017 Score=49.17 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.|++.|+||+|||+|++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998753
No 456
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.57 E-value=0.02 Score=44.40 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877654
No 457
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.56 E-value=0.02 Score=46.06 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 458
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.02 Score=48.87 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.|++.||||+|||.|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998754
No 459
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.48 E-value=0.023 Score=43.23 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.2
Q ss_pred eEEEEcCCCCcHHHHHHHHh
Q 026548 30 KVVVIGDSAVGKSQILSRFT 49 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~ 49 (237)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35788999999999999874
No 460
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.47 E-value=0.28 Score=37.17 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=55.2
Q ss_pred EEEEEEeCCCc-chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHH
Q 026548 77 IKAQIWDTAGQ-ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAED 155 (237)
Q Consensus 77 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~ 155 (237)
+.+.++|+|+. ... .....+..+|.+|+++..+ ..+...+...++.+.... +.++.+|+|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 45779999876 332 3445677899999888764 555666666666666533 4668899999985420 12345
Q ss_pred HHHHHHHcCCeEE
Q 026548 156 AVEFAEDQGLFFS 168 (237)
Q Consensus 156 ~~~~~~~~~~~~~ 168 (237)
..+..+..+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 5555666665544
No 461
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.46 E-value=0.02 Score=47.53 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++|.|++|+|||||++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999987543
No 462
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.46 E-value=0.027 Score=45.36 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-.++++|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988654
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.45 E-value=0.022 Score=43.30 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
..|+|+|++|+|||+|...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998664
No 464
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.44 E-value=0.022 Score=46.64 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.|++.|++|+|||+|++++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998754
No 465
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.44 E-value=0.022 Score=46.54 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...|++.|++|+|||+|++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998654
No 466
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.41 E-value=0.014 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++++|+.|||||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999988754
No 467
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.38 E-value=0.014 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++++|+.|||||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999998777654
No 468
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.38 E-value=0.016 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++++|+.|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999887654
No 469
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.37 E-value=0.02 Score=46.33 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=49.1
Q ss_pred EEEEEEeCCCcchhchh-h---Hhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548 77 IKAQIWDTAGQERYRAV-T---SAYYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~-~---~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 150 (237)
+.+.|+||+|....... . ...+. ..+.+++|+|++.. ...+..+...+.. .+ ..-+|+||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc--
Confidence 45789999996654321 1 12232 36778999987643 2334333333221 12 23466799996532
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 026548 151 VSAEDAVEFAEDQGLFFSEAS 171 (237)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~S 171 (237)
...+...+...++|+..++
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2356677778888866654
No 470
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.025 Score=48.36 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.|++.|+||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998754
No 471
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.024 Score=50.56 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 026548 31 VVVIGDSAVGKSQILSRFTKNEF 53 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~~~ 53 (237)
++|+|+.|+|||||++.|.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999988654
No 472
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.28 E-value=0.021 Score=47.33 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998865
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.25 E-value=0.018 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999887654
No 474
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.24 E-value=0.027 Score=45.78 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988653
No 475
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.16 E-value=0.032 Score=41.65 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 026548 31 VVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 31 i~v~G~~~sGKSsli~~l~~~ 51 (237)
++|+|.++||||+|...|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999855
No 476
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.024 Score=47.81 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.|++.|+||+|||.|.+++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 447999999999999999998754
No 477
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.12 E-value=0.028 Score=46.06 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.|+|+|++|||||||...|..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 478
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.11 E-value=0.026 Score=45.91 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=51.2
Q ss_pred EEEEEEeCCCcchhchhh-------Hhhh-----cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548 77 IKAQIWDTAGQERYRAVT-------SAYY-----RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~-------~~~~-----~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 144 (237)
+.+.|+||||........ ...+ ...|.+++|+|+.... +.+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 347799999953222111 1111 2478899999987432 22222 12233221 2 2346789999
Q ss_pred CCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 179 (237)
... ....+..+....+.|+.++. .|+.++
T Consensus 261 ~~~----~gG~~l~~~~~~~~Pi~~i~--~Ge~~~ 289 (306)
T 1vma_A 261 GTA----KGGITLAIARELGIPIKFIG--VGEKAE 289 (306)
T ss_dssp GCS----CTTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred Ccc----chHHHHHHHHHHCCCEEEEe--CCCChh
Confidence 643 22347788888999987775 344444
No 479
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.10 E-value=0.025 Score=46.41 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
++++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988654
No 480
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.10 E-value=0.02 Score=45.25 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.2
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
+...|+|.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999887653
No 481
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.05 E-value=0.011 Score=46.70 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.|++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998753
No 482
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.03 E-value=0.031 Score=46.31 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~ 50 (237)
..+|+++|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999987643
No 483
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.03 E-value=0.03 Score=46.18 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 026548 29 FKVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~ 50 (237)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3689999999999999998764
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.02 E-value=0.036 Score=43.15 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
..|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999988653
No 485
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.02 E-value=0.029 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
-.++|.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988643
No 486
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.01 E-value=0.28 Score=39.64 Aligned_cols=22 Identities=9% Similarity=0.359 Sum_probs=16.9
Q ss_pred eEEE-EcCCCCcHHHHHHHHhcC
Q 026548 30 KVVV-IGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v-~G~~~sGKSsli~~l~~~ 51 (237)
++++ .|++|+|||++++.+...
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHHH
Confidence 4545 456999999999998643
No 487
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.99 E-value=0.46 Score=36.53 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=56.9
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA 156 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 156 (237)
+.+.|+|+|+.. .......+..+|.+|+++..+ ..+...+..+++.+.........+.+|+|+.+... ....+
T Consensus 119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~-- 191 (245)
T 3ea0_A 119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD-- 191 (245)
T ss_dssp CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH--
T ss_pred CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH--
Confidence 457899998754 224455678899999998764 66667777777777654323455789999998543 23333
Q ss_pred HHHHHHcCCeEEEE
Q 026548 157 VEFAEDQGLFFSEA 170 (237)
Q Consensus 157 ~~~~~~~~~~~~~~ 170 (237)
.+.+.++.+++.+
T Consensus 192 -~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 192 -EIEKVIGRPISKR 204 (245)
T ss_dssp -HHHHHHTSCEEEE
T ss_pred -HHHHHhCCCeEEE
Confidence 3444567776654
No 488
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.98 E-value=0.025 Score=46.85 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
No 489
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.024 Score=46.30 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=21.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
..-.++|.|+||+|||++++.+...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988754
No 490
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.93 E-value=0.046 Score=45.33 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.3
Q ss_pred eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 27 ~~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
....|++.|++|+|||++.+.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988653
No 491
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.90 E-value=0.023 Score=46.44 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 026548 30 KVVVIGDSAVGKSQILSRFTK 50 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~ 50 (237)
.+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999998865
No 492
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.87 E-value=0.028 Score=48.10 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.+++.|++|+|||+|++.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999988753
No 493
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.86 E-value=0.028 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.|+|+|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998764
No 494
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.85 E-value=0.033 Score=46.20 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.|+|.|++|+|||+|++++...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999988754
No 495
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.78 E-value=0.031 Score=47.47 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.-.|++.|+||+|||.|++++.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 457999999999999999998754
No 496
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.75 E-value=0.036 Score=43.70 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (237)
Q Consensus 29 ~~i~v~G~~~sGKSsli~~l~~~~ 52 (237)
..|++.|++|+|||+|++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 579999999999999999987653
No 497
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.73 E-value=0.034 Score=46.33 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...|+++|++|+|||++.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
No 498
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.72 E-value=0.74 Score=36.90 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=54.6
Q ss_pred EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEE-EEEeCCCCCCCcCCCHH
Q 026548 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRII-LIGNKSDLVDMRAVSAE 154 (237)
Q Consensus 77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~v-vv~nK~D~~~~~~~~~~ 154 (237)
+.+.|+|+|+.-.... ....+..+|.+|+++.. +..+...+..++..+..... .+.+++ +|+|+.+.. +
T Consensus 157 yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~ 227 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------D 227 (307)
T ss_dssp CSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------H
T ss_pred CCEEEEeCCCccchHH-HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------H
Confidence 5678999987543222 23456789999998875 45566666666666665422 456655 899999832 3
Q ss_pred HHHHHHHHcCCeEEE
Q 026548 155 DAVEFAEDQGLFFSE 169 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (237)
...++.+..+.+++.
T Consensus 228 ~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 228 EVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHcCCCcee
Confidence 455666677776544
No 499
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.71 E-value=0.037 Score=45.88 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 28 ~~~i~v~G~~~sGKSsli~~l~~~ 51 (237)
...|+|.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998653
No 500
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.71 E-value=0.032 Score=48.20 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 026548 30 KVVVIGDSAVGKSQILSRFTKN 51 (237)
Q Consensus 30 ~i~v~G~~~sGKSsli~~l~~~ 51 (237)
.|+++|++|+|||+|++.+.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998763
Done!