BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026549
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 113/220 (51%), Gaps = 49/220 (22%)
Query: 21 RSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
RSN +GTKF VYD G P + T T L+Q +A + YE NVLG
Sbjct: 100 RSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------ELAAVCYETNVLG 145
Query: 80 SRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSG 137
+GPR+M + +P + E + P N E L+
Sbjct: 146 FKGPRKMSVI---VPGMNMVHERVSIRP----------------------RNEHETLLAR 180
Query: 138 PLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKI 197
+ + L+NK P W++ Q + LNFHGRVT ASVKNFQ++ G + + I
Sbjct: 181 WQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-------GNDPDYI 233
Query: 198 ILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 234 VMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 114/218 (52%), Gaps = 47/218 (21%)
Query: 21 RSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
RSN LG +F V+D GQ P G ST +A+L+Q +A + YE NVLG
Sbjct: 105 RSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ----------ELAAVIYETNVLG 148
Query: 80 SRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPL 139
RGPRRM + IP + E+ + P P N S+ L
Sbjct: 149 FRGPRRMTVI---IPGMSAEN---------------ERVPIRP-----RNASDGLLVRWQ 185
Query: 140 ACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIIL 199
+ + L NK P W++ + LNF GRVT ASVKNFQ+V + + + I+L
Sbjct: 186 NKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD-------PDYIVL 238
Query: 200 QFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
QFG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 239 QFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 113/220 (51%), Gaps = 49/220 (22%)
Query: 21 RSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
RSN +GTKF VYD G P + T T L+Q +A + YE NVLG
Sbjct: 92 RSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------ELAAVCYETNVLG 137
Query: 80 SRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSG 137
+GPR+M + +P + E + P N E L+
Sbjct: 138 FKGPRKMSVI---VPGMNMVHERVCIRP----------------------RNEHETLLAR 172
Query: 138 PLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKI 197
+ + L+NK P W++ Q + LNFHGRVT ASVKNFQ++ G + + I
Sbjct: 173 WQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-------GNDPDYI 225
Query: 198 ILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 226 VMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 113/220 (51%), Gaps = 49/220 (22%)
Query: 21 RSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
RSN +GTKF VYD G P + T T L+Q +A + YE NVLG
Sbjct: 92 RSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------ELAAVCYETNVLG 137
Query: 80 SRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSG 137
+GPR+M + +P + E + P N E L+
Sbjct: 138 FKGPRKMSVI---VPGMNMVHERVCIRP----------------------RNEHETLLAR 172
Query: 138 PLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKI 197
+ + L+NK P W++ + + LNFHGRVT ASVKNFQ++ G + + I
Sbjct: 173 WQNKNTESIIELQNKTPVWNDDTESYVLNFHGRVTQASVKNFQIIH-------GNDPDYI 225
Query: 198 ILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 226 VMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 109/212 (51%), Gaps = 47/212 (22%)
Query: 21 RSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
RSN LG +F V+D GQ P G ST +A+L+Q +A + YE NVLG
Sbjct: 81 RSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ----------ELAAVIYETNVLG 124
Query: 80 SRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPL 139
RGPRRM + IP + E+ V P P N S+ L
Sbjct: 125 FRGPRRMTVI---IPGMSAENERV---------------PIRP-----RNASDGLLVRWQ 161
Query: 140 ACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIIL 199
+ + L NK P W++ + LNF GRVT ASVKNFQ+V + + + I+L
Sbjct: 162 NKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD-------PDYIVL 214
Query: 200 QFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 231
QFG+V +D FT+DYRYP+ A QAFAI LSSFD
Sbjct: 215 QFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246
>pdb|3PP7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
In Complex With The Drug Suramin, An Inhibitor Of
Glycolysis.
pdb|3PP7|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
In Complex With The Drug Suramin, An Inhibitor Of
Glycolysis
Length = 498
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 96 SAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPR 155
+ +E G T+ F AD F+ N S+ G DG L+L+ ++
Sbjct: 99 AVMERGATCYVTTDPAF--ADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHE 156
Query: 156 WHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFG-KVGKDLF 209
+ L+C N H T++ + L + PA +++ LQFG + G D+
Sbjct: 157 DEQTLECTVTNSH---TISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMI 208
>pdb|3E0V|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|B Chain B, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|C Chain C, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|D Chain D, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|E Chain E, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|F Chain F, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0W|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana
Length = 539
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 96 SAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPR 155
+ +E G T+ F AD F+ N S+ G DG L+L+ ++
Sbjct: 140 AVMERGATCYVTTDPAF--ADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHE 197
Query: 156 WHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFG-KVGKDLF 209
+ L+C N H T++ + L + PA +++ LQFG + G D+
Sbjct: 198 DEQTLECTVTNSH---TISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMI 249
>pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|B Chain B, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|C Chain C, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|D Chain D, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|E Chain E, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|F Chain F, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|H Chain H, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|G Chain G, The Structure Of Leishmania Pyruvate Kinase
pdb|3KTX|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3KTX|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3HQN|D Chain D, Apo Crystal Structure Of Leishmania
Mexicana(Lmpyk)pyruvate Kinase
pdb|3HQN|A Chain A, Apo Crystal Structure Of Leishmania
Mexicana(Lmpyk)pyruvate Kinase
pdb|3HQO|K Chain K, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|A Chain A, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|B Chain B, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|C Chain C, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQP|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|E Chain E, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|F Chain F, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|G Chain G, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|H Chain H, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|I Chain I, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|J Chain J, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|K Chain K, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|L Chain L, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|M Chain M, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|N Chain N, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|O Chain O, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|P Chain P, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQQ|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|E Chain E, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|F Chain F, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|G Chain G, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|H Chain H, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|I Chain I, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|J Chain J, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|K Chain K, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|L Chain L, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|M Chain M, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|N Chain N, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|O Chain O, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|P Chain P, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|Q Chain Q, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|R Chain R, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|S Chain S, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|T Chain T, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|U Chain U, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|V Chain V, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|W Chain W, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|X Chain X, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3IS4|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3IS4|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3QV6|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Acid Blue 80.
pdb|3QV6|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Acid Blue 80.
pdb|3QV7|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV8|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With
Benzothiazole-2,5-Disulfonic Acid.
pdb|3QV8|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With
Benzothiazole-2,5-Disulfonic Acid.
pdb|3SRK|A Chain A, A New Class Of Suicide Inhibitor Blocks Nucleotide Binding
To Pyruvate Kinase
pdb|3SRK|B Chain B, A New Class Of Suicide Inhibitor Blocks Nucleotide Binding
To Pyruvate Kinase
Length = 499
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 96 SAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPR 155
+ +E G T+ F AD F+ N S+ G DG L+L+ ++
Sbjct: 100 AVMERGATCYVTTDPAF--ADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHE 157
Query: 156 WHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFG-KVGKDLF 209
+ L+C N H T++ + L + PA +++ LQFG + G D+
Sbjct: 158 DEQTLECTVTNSH---TISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMI 209
>pdb|4G5E|A Chain A, 2,4,6-Trichlorophenol 4-Monooxygenase
pdb|4G5E|B Chain B, 2,4,6-Trichlorophenol 4-Monooxygenase
pdb|4G5E|C Chain C, 2,4,6-Trichlorophenol 4-Monooxygenase
pdb|4G5E|D Chain D, 2,4,6-Trichlorophenol 4-Monooxygenase
Length = 517
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 187 NGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAF 223
NGP G H+++ + G+V +DLF D+ + F+ F
Sbjct: 412 NGPVGQPHDRV--KIGRVIRDLFLTDWGNRLFVFENF 446
>pdb|3SQI|A Chain A, Dna Binding Domain Of Ndc10
Length = 534
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 165 LNFHGRVTVASVKNFQLVASPENGPAGLEH 194
++F R TV S+K+ Q + ENG GL H
Sbjct: 151 VSFEDRTTV-SLKDLQCILDDENGKCGLAH 179
>pdb|3T79|A Chain A, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
pdb|3T79|D Chain D, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
Length = 402
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 165 LNFHGRVTVASVKNFQLVASPENGPAGLEH 194
++F R TV S+K+ Q + ENG GL H
Sbjct: 151 VSFEDRTTV-SLKDLQCILDDENGKCGLAH 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,851,067
Number of Sequences: 62578
Number of extensions: 268231
Number of successful extensions: 678
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 16
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)