Query 026549
Match_columns 237
No_of_seqs 145 out of 337
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:14:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 1.8E-72 6.3E-77 507.9 14.3 189 1-237 88-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.9E-69 6.5E-74 481.4 14.6 183 1-231 64-246 (246)
3 1lql_A OSMC, osmotical inducib 24.2 44 0.0015 26.7 2.6 15 217-231 64-78 (166)
4 2ql8_A Putative redox protein; 22.7 55 0.0019 25.2 2.9 15 217-231 46-60 (143)
5 3cgm_A SLYD, peptidyl-prolyl C 20.9 40 0.0014 27.0 1.8 23 197-219 101-123 (158)
6 2kr7_A FKBP-type peptidyl-prol 19.7 50 0.0017 26.0 2.1 22 197-218 110-131 (151)
7 2bjo_A Organic hydroperoxide r 18.6 75 0.0026 24.0 2.8 15 217-231 42-56 (136)
8 2ypj_A Eccel5A, endoglucanase 18.0 72 0.0025 25.3 2.6 28 176-210 67-94 (155)
9 4ba6_A Endoglucanase CEL5A; ca 17.3 77 0.0026 24.8 2.6 27 177-210 49-75 (144)
10 1zxu_A AT5G01750 protein; PFAM 16.5 2.2E+02 0.0074 23.3 5.4 43 176-228 154-204 (217)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=1.8e-72 Score=507.91 Aligned_cols=189 Identities=41% Similarity=0.653 Sum_probs=139.3
Q ss_pred CCCccccccCCCceeeCcEEeeeecccEEEEeCCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEeecccccC
Q 026549 1 MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80 (237)
Q Consensus 1 l~~~d~sr~s~~yv~~~GKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~spr~~~~~~ela~I~Ye~Nvlg~ 80 (237)
+|++||||++++|| |||||||+||+|+|||+|.+++.+ .+|.++.+|+|||+|.||+||||+
T Consensus 88 ~d~~dlsr~s~~yv---GKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~ 149 (276)
T 2fim_A 88 IDPTNLSRGGENFI---GKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGF 149 (276)
T ss_dssp SCTTC------CEE---EEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC------
T ss_pred ecchhcccCCceEE---EEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCC
Confidence 68999999999999 999999999999999999876432 245666788999999999999999
Q ss_pred CCCceeEEeecCCCcccccCCCCCCccceeccCCCCCCCCcccccccCcccccccCCccccCCCceeEeeeCCccccccC
Q 026549 81 RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQL 160 (237)
Q Consensus 81 rGPRkM~~~i~~ip~s~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~ 160 (237)
+|||+|+|+||.+. ++|+..|.++ ....++++.++++...+++++|+||+|+|||++
T Consensus 150 ~gPR~m~v~iP~~~----~~~~~~~~~p-------------------~~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~ 206 (276)
T 2fim_A 150 RGPRRMTVIIPGMS----AENERVPIRP-------------------RNASDGLLVRWQNKTLESLIELHNKPPVWNDDS 206 (276)
T ss_dssp ---CCEEEEEECBC----TTSCBCCCCC-------------------SSTTCSHHHHHHHTCCTTEEEEEECCCEEETTT
T ss_pred CCCeEEEEEecCcc----cCCCEecccC-------------------CCcccccchhhhccCCcceEeeeccCCcccccC
Confidence 99999999998642 2343333211 111122233344455689999999999999999
Q ss_pred ceEEeccCCceeccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 026549 161 QCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237 (237)
Q Consensus 161 ~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~yPlS~~QAFaiaLssfd~K~aCe 237 (237)
|||||||+||||+|||||||||+++ ++++||||||||++|+|+|||+|||||||||||||||||+|||||
T Consensus 207 ~~y~LnF~GRVt~aSvKNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 207 GSYTLNFQGRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp TEEECCCTTCCCSCCTTCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred CEEEEecCCeeeccccceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 9999999999999999999999974 578999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.9e-69 Score=481.38 Aligned_cols=183 Identities=40% Similarity=0.634 Sum_probs=145.3
Q ss_pred CCCccccccCCCceeeCcEEeeeecccEEEEeCCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEeecccccC
Q 026549 1 MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80 (237)
Q Consensus 1 l~~~d~sr~s~~yv~~~GKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~spr~~~~~~ela~I~Ye~Nvlg~ 80 (237)
||++||||++++|| |||||||+||+|+|||+|.+++.+ .+|.++++|+|||+|.||+||||+
T Consensus 64 ~d~~dlsr~s~~yv---GKLrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~~v~Ye~n~l~~ 125 (246)
T 3c5n_A 64 IDPTNLSRGGENFI---GKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGF 125 (246)
T ss_dssp SCTTC------CEE---EEEEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEEEEEECCCCCC-
T ss_pred eCccccccCCceEE---EEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCC
Confidence 68999999999999 999999999999999999876432 245666788999999999999999
Q ss_pred CCCceeEEeecCCCcccccCCCCCCccceeccCCCCCCCCcccccccCcccccccCCccccCCCceeEeeeCCccccccC
Q 026549 81 RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQL 160 (237)
Q Consensus 81 rGPRkM~~~i~~ip~s~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~ 160 (237)
+|||+|+|+||.+. ++|+..|.++ ....++++.++++...+++++|+||+|+|||++
T Consensus 126 ~gPR~m~v~iP~~~----~~~~~~~~~p-------------------~~~~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~ 182 (246)
T 3c5n_A 126 RGPRRMTVIIPGMS----AENERVPIRP-------------------RNASDGLLVRWQNKTLESLIELHNKPPVWNDDS 182 (246)
T ss_dssp --CCCEEEEEECBC----TTSCBCCCCC-------------------SSTTSSHHHHHHHTCCTTEEEEEECCCEEETTT
T ss_pred CCCeEEEEEecCcc----cCCCEeeccC-------------------CCccccchhhhhccCCcceEEEeccCCcccccC
Confidence 99999999997642 2344333211 111122233344455689999999999999999
Q ss_pred ceEEeccCCceeccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHhCc
Q 026549 161 QCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 231 (237)
Q Consensus 161 ~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~yPlS~~QAFaiaLssfd 231 (237)
|||||||+||||+|||||||||+++ ++++||||||||++|+|+|||+|||||||||||||||||
T Consensus 183 ~~y~LnF~GRvt~aSvKNFqLv~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 183 GSYTLNFQGRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp TEEECCCTTSCCBCCTTCEEEEBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred CEEEEecCCeeeccccceEEEEecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999974 578999999999999999999999999999999999998
No 3
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=24.24 E-value=44 Score=26.68 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHhCc
Q 026549 217 ISAFQAFAICLSSFD 231 (237)
Q Consensus 217 lS~~QAFaiaLssfd 231 (237)
.+|.|.|+.||++|-
T Consensus 64 ~nP~ELllaalaaC~ 78 (166)
T 1lql_A 64 FGPLAALLSGLAACE 78 (166)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 599999999999863
No 4
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=22.71 E-value=55 Score=25.21 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHhCc
Q 026549 217 ISAFQAFAICLSSFD 231 (237)
Q Consensus 217 lS~~QAFaiaLssfd 231 (237)
.+|.|.|+.||++|-
T Consensus 46 ~nP~eLllaala~C~ 60 (143)
T 2ql8_A 46 TNPEQLLGLSLSTCL 60 (143)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 599999999999863
No 5
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=20.91 E-value=40 Score=26.99 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=18.2
Q ss_pred EEEEeeccCCCeeEEEccCCCCH
Q 026549 197 IILQFGKVGKDLFTMDYRYPISA 219 (237)
Q Consensus 197 ivlqfGKv~~~~F~lD~~yPlS~ 219 (237)
+....=++.++..++||.+||..
T Consensus 101 ~~~~V~~v~~~~v~vD~NHPLAG 123 (158)
T 3cgm_A 101 MPLTVVAVEGEEVTVDFNHPLAG 123 (158)
T ss_dssp EEEEEEEEETTEEEEECSCTTTT
T ss_pred EEEEEEEECCCEEEEeCCccccC
Confidence 34446678999999999999963
No 6
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=19.72 E-value=50 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=18.0
Q ss_pred EEEEeeccCCCeeEEEccCCCC
Q 026549 197 IILQFGKVGKDLFTMDYRYPIS 218 (237)
Q Consensus 197 ivlqfGKv~~~~F~lD~~yPlS 218 (237)
+....=+|+++.-++||.|||.
T Consensus 110 ~~~~V~~v~~~~v~vD~NHPLA 131 (151)
T 2kr7_A 110 IQAIIKDFSATHVMVDYNHPLA 131 (151)
T ss_dssp EEEEEEEECSSEEEEEECCTTS
T ss_pred EEEEEEEECCCEEEEECCCcCC
Confidence 4444667899999999999996
No 7
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=18.59 E-value=75 Score=24.04 Aligned_cols=15 Identities=20% Similarity=0.040 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHhCc
Q 026549 217 ISAFQAFAICLSSFD 231 (237)
Q Consensus 217 lS~~QAFaiaLssfd 231 (237)
.+|.|.|+.||++|-
T Consensus 42 ~nP~eLllaala~C~ 56 (136)
T 2bjo_A 42 TNPEQLFAAGYAACF 56 (136)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 499999999999863
No 8
>2ypj_A Eccel5A, endoglucanase CEL5A; hydrolase, cellulase, xyloglucan, ITC; HET: BGC; 2.35A {Eubacterium cellulosolvens}
Probab=17.99 E-value=72 Score=25.29 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=21.0
Q ss_pred cceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeE
Q 026549 176 VKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFT 210 (237)
Q Consensus 176 vKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~ 210 (237)
-|||.+-.+- ....|||.|.|+.++++.
T Consensus 67 nknfeikvdy-------~gadivlifarw~~~iwa 94 (155)
T 2ypj_A 67 NKNFEIKVDY-------NGADIVLIFARWDKDIWA 94 (155)
T ss_dssp TSCEEEEEEE-------EESCEEEEEEETTTTEEE
T ss_pred CcCeEEEEec-------CCCcEEEEEeecChhhhh
Confidence 3899986541 235699999999998864
No 9
>4ba6_A Endoglucanase CEL5A; carbohydrate-binding protein, plant cell WALL degradation, beta-jelly roll; 1.42A {Eubacterium cellulosolvens}
Probab=17.28 E-value=77 Score=24.84 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=20.6
Q ss_pred ceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeE
Q 026549 177 KNFQLVASPENGPAGLEHEKIILQFGKVGKDLFT 210 (237)
Q Consensus 177 KNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~ 210 (237)
|||.+-.+- ....|||.|.|+.++++.
T Consensus 49 knfeikvdy-------~gadivlifarw~~~iwa 75 (144)
T 4ba6_A 49 KNFEIKVDY-------NGADIVLIFARWDKDIWA 75 (144)
T ss_dssp SCEEEEEEE-------EESCEEEEEEETTTTEEE
T ss_pred cCeEEEEec-------CCCcEEEEEeecChhhhh
Confidence 899986541 235699999999998764
No 10
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=16.47 E-value=2.2e+02 Score=23.27 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=27.7
Q ss_pred cceeEEEeCCCCCCCCCCCCeEEEEeecc--------CCCeeEEEccCCCCHHHHHHHHHH
Q 026549 176 VKNFQLVASPENGPAGLEHEKIILQFGKV--------GKDLFTMDYRYPISAFQAFAICLS 228 (237)
Q Consensus 176 vKNFQLv~~~~~~~~~~~~~~ivlqfGKv--------~~~~F~lD~~yPlS~~QAFaiaLs 228 (237)
-.+|.++..+ .+.+|.+.-|- ++|.|.|++.--+- .||+|||.
T Consensus 154 ~~~f~I~~~~--------~~~~Va~I~kk~~~~~~~~~~D~y~l~V~p~~D--~aliialv 204 (217)
T 1zxu_A 154 ERSCVVYAGE--------SDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVD--YAFIASLV 204 (217)
T ss_dssp TTCCEEEETT--------TCCEEEEEEEC--------CBCSEEEEECTTSB--HHHHHHHH
T ss_pred CCEEEEEECC--------CCEEEEEEEeeeeccccccCCcEEEEEECCCCC--HHHHHHHH
Confidence 4678887641 24677777664 66999999943333 36666654
Done!