Query 026549
Match_columns 237
No_of_seqs 145 out of 337
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 16:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026549.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026549hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c8za_ d.23.1.1 (A:) Transcri 100.0 2.7E-68 2E-72 476.3 14.1 191 1-237 75-265 (265)
2 d1lqla_ d.227.1.1 (A:) Hypothe 29.7 25 0.0018 25.2 4.0 37 172-231 17-53 (141)
3 d2g40a1 c.124.1.7 (A:38-212) H 19.3 21 0.0015 27.1 1.7 14 77-90 160-173 (175)
4 d1ix5a_ d.26.1.1 (A:) Archaeal 14.2 33 0.0024 25.2 1.7 16 203-218 121-136 (151)
5 d2gcla1 b.55.1.10 (A:237-474) 12.5 64 0.0046 25.5 3.1 58 144-209 163-222 (238)
6 d2onfa1 d.227.1.1 (A:1-139) Hy 11.5 68 0.005 22.3 2.7 16 216-231 39-54 (139)
7 d1vlaa_ d.227.1.2 (A:) Hypothe 10.9 88 0.0064 21.7 3.2 15 217-231 42-56 (144)
8 d1uspa_ d.227.1.1 (A:) Organic 10.4 89 0.0065 21.4 3.0 14 217-230 42-55 (137)
9 d1k46a_ d.195.1.1 (A:) YopH ty 8.3 37 0.0027 24.7 0.0 15 9-26 18-32 (124)
10 d1v6za1 b.122.1.2 (A:4-66) Hyp 6.5 1E+02 0.0076 19.4 1.6 16 19-35 23-38 (63)
No 1
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00 E-value=2.7e-68 Score=476.25 Aligned_cols=191 Identities=40% Similarity=0.634 Sum_probs=158.5
Q ss_pred CCCccccccCCCceeeCcEEeeeecccEEEEeCCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEeecccccC
Q 026549 1 MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80 (237)
Q Consensus 1 l~~~d~sr~s~~yv~~~GKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~spr~~~~~~ela~I~Ye~Nvlg~ 80 (237)
+|++||||+|++|| |||||||+||+|+|||+|.+++.+... +++..+.|+|||+|.||+||||+
T Consensus 75 ~~~~d~sr~s~~yv---GKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~ 138 (265)
T d1c8za_ 75 VDPTDLSRGGDSYI---GKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGF 138 (265)
T ss_dssp SCHHHHTTTCCCCS---EEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSC
T ss_pred ccHHHhccccccee---EEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhcc
Confidence 58899999999999 999999999999999999888665321 11223457899999999999999
Q ss_pred CCCceeEEeecCCCcccccCCCCCCccceeccCCCCCCCCcccccccCcccccccCCccccCCCceeEeeeCCccccccC
Q 026549 81 RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQL 160 (237)
Q Consensus 81 rGPRkM~~~i~~ip~s~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~ 160 (237)
||||+|+|+||+++...-. . + . .+. ...++++..+.+..++++++|+||+|+||+++
T Consensus 139 rGPR~m~~~ip~~~~~~~~----~--~--~-~p~--------------~~~~~~~~~~~~~~~~~~~~l~~k~P~~n~~~ 195 (265)
T d1c8za_ 139 KGPRKMSVIVPGMNMVHER----V--C--I-RPR--------------NEHETLLARWQNKNTESIIELQNKTPVWNDDT 195 (265)
T ss_dssp CSCCCEEEEEECBCTTSCB----C--C--C-CCS--------------STTSSHHHHHHTTCCSSEEEEEECCCEEETTT
T ss_pred CCCceeEEEecCCCccccc----c--c--c-CCC--------------CcchhhhHHhhccCcccceEEecCCCeeeccC
Confidence 9999999999987642211 0 0 0 001 11222233334456689999999999999999
Q ss_pred ceEEeccCCceeccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 026549 161 QCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237 (237)
Q Consensus 161 ~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~yPlS~~QAFaiaLssfd~K~aCe 237 (237)
++|+|||+|||++|||||||||+++ +++++|||||||++|+|+|||+|||||+|||||||||||+|+|||
T Consensus 196 ~~~~LnF~gRv~~~SvKNFql~~~~-------~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace 265 (265)
T d1c8za_ 196 QSYVLNFHGRVTQASVKNFQIIHGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265 (265)
T ss_dssp TEEEEEETTEEEECBTTEEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred CEEEeccCCEEeccccceEEEEeCC-------CCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence 9999999999999999999999864 578899999999999999999999999999999999999999998
No 2
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=29.68 E-value=25 Score=25.21 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=25.5
Q ss_pred eccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHhCc
Q 026549 172 TVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 231 (237)
Q Consensus 172 ~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~yPlS~~QAFaiaLssfd 231 (237)
..+..+||+|+.+.. ++ .| +++ ++|.|.|++||++|-
T Consensus 17 ~~~~~~~~~i~~d~~-------~~-----~~--~~G---------~~P~elllaaLa~C~ 53 (141)
T d1lqla_ 17 MTAISDQFQITLDAR-------PK-----HT--AKG---------FGPLAALLSGLAACE 53 (141)
T ss_dssp EEEEETTEEEEECCS-------CT-----TT--CSS---------CCHHHHHHHHHHHHH
T ss_pred EEEEcCCeEEEecCC-------CC-----CC--CCC---------cCHHHHHHHHHHHHH
Confidence 457889999998631 11 01 111 699999999999863
No 3
>d2g40a1 c.124.1.7 (A:38-212) Hypothetical protein DR1909 {Deinococcus radiodurans [TaxId: 1299]}
Probab=19.28 E-value=21 Score=27.07 Aligned_cols=14 Identities=50% Similarity=0.966 Sum_probs=10.8
Q ss_pred cccCCCCceeEEee
Q 026549 77 VLGSRGPRRMQCVM 90 (237)
Q Consensus 77 vlg~rGPRkM~~~i 90 (237)
|+|-.|||+++|++
T Consensus 160 v~GvHGP~~l~vvl 173 (175)
T d2g40a1 160 VEGVHGPRRLQVIV 173 (175)
T ss_dssp --CCSSCSEEEEEE
T ss_pred cccCCCCcEEEEEE
Confidence 67888999999986
No 4
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}
Probab=14.24 E-value=33 Score=25.17 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=14.6
Q ss_pred ccCCCeeEEEccCCCC
Q 026549 203 KVGKDLFTMDYRYPIS 218 (237)
Q Consensus 203 Kv~~~~F~lD~~yPlS 218 (237)
+++++.-++||.|||.
T Consensus 121 ~v~~~~v~vD~NHPlA 136 (151)
T d1ix5a_ 121 EVTDNEVTLDFNHELA 136 (151)
T ss_dssp EEETTEEEEECCCSST
T ss_pred EEcCCEEEEECCCcCC
Confidence 7788999999999996
No 5
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.50 E-value=64 Score=25.49 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=33.5
Q ss_pred CceeEeeeCCccccccCceEEeccCCcee--ccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCee
Q 026549 144 DGALVLRNKAPRWHEQLQCWCLNFHGRVT--VASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLF 209 (237)
Q Consensus 144 ~~~~~l~nk~P~w~~~~~~y~LnF~GRv~--~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F 209 (237)
++.+.+..|||.+=.-...=...| .||. ..+-|||.|+-.-. + ..-..+|.-|.++.|
T Consensus 163 ~~~llf~~KP~~~i~~~eI~~V~f-~Rv~~~~~~~rtFD~~v~~k------~-~~~~~~fs~I~~~e~ 222 (238)
T d2gcla1 163 DNAFFFLTKPTLYIPFSDVSMVNI-SRAGQTSTSSRTFDLEVVLR------S-NRGSTTFANISKEEQ 222 (238)
T ss_dssp SSEEEEESSSCEEEEGGGEEEEEE-EC--------CEEEEEEEES------T-TCCEEEEEEEEGGGH
T ss_pred cCeEEEecCCcEEEEehhEeEEEE-EeecCCccccceeeEEEEEe------C-CCccEEEeccCHHHH
Confidence 445556679888765555555565 5674 44679999986521 1 233578888877665
No 6
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=11.51 E-value=68 Score=22.29 Aligned_cols=16 Identities=19% Similarity=0.083 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHhCc
Q 026549 216 PISAFQAFAICLSSFD 231 (237)
Q Consensus 216 PlS~~QAFaiaLssfd 231 (237)
-.+|.|.|+.||++|-
T Consensus 39 g~~P~elllaala~C~ 54 (139)
T d2onfa1 39 QLYPETLFPSVLASCL 54 (139)
T ss_dssp SBCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 3499999999998863
No 7
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=10.87 E-value=88 Score=21.73 Aligned_cols=15 Identities=7% Similarity=-0.031 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHhCc
Q 026549 217 ISAFQAFAICLSSFD 231 (237)
Q Consensus 217 lS~~QAFaiaLssfd 231 (237)
.+|.|.|..||++|-
T Consensus 42 ~~P~elllaala~C~ 56 (144)
T d1vlaa_ 42 PRPLELVLTGLMGCT 56 (144)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 599999999998874
No 8
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=10.39 E-value=89 Score=21.43 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHhC
Q 026549 217 ISAFQAFAICLSSF 230 (237)
Q Consensus 217 lS~~QAFaiaLssf 230 (237)
++|.|.|+.||++|
T Consensus 42 ~~P~elllaAlasC 55 (137)
T d1uspa_ 42 TNPEQLFAAGYAAC 55 (137)
T ss_dssp BCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 59999999999886
No 9
>d1k46a_ d.195.1.1 (A:) YopH tyrosine phosphatase N-terminal domain {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=8.32 E-value=37 Score=24.71 Aligned_cols=15 Identities=13% Similarity=-0.201 Sum_probs=11.4
Q ss_pred cCCCceeeCcEEeeeecc
Q 026549 9 GYNFMLVCFFLARSNFLG 26 (237)
Q Consensus 9 ~s~~yv~~~GKLRSNflG 26 (237)
.+...+ ||||+|...
T Consensus 18 ~~Gd~~---GkLrg~vaa 32 (124)
T d1k46a_ 18 ESGDCT---GKLRGNVAA 32 (124)
T ss_dssp TCTTSC---CCCCCCCCC
T ss_pred cCccce---eeehhhhhc
Confidence 456667 999999854
No 10
>d1v6za1 b.122.1.2 (A:4-66) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=6.50 E-value=1e+02 Score=19.35 Aligned_cols=16 Identities=38% Similarity=0.879 Sum_probs=11.4
Q ss_pred EEeeeecccEEEEeCCC
Q 026549 19 LARSNFLGTKFIVYDGQ 35 (237)
Q Consensus 19 KLRSNflGTkF~iYD~g 35 (237)
-||+ -.|..|++||..
T Consensus 23 vlra-~vgdrftvfd~~ 38 (63)
T d1v6za1 23 VLRA-RVGDRFTVFDGE 38 (63)
T ss_dssp TSCC-CTTCEEEEECSS
T ss_pred HHHh-ccCcceEEecch
Confidence 3443 369999999973
Done!