BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026550
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OAU|A Chain A, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|B Chain B, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|C Chain C, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|D Chain D, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|E Chain E, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|F Chain F, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|G Chain G, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|4HWA|A Chain A, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|B Chain B, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|C Chain C, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|D Chain D, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|E Chain E, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|F Chain F, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|G Chain G, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
Length = 306
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 41 LAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIF 100
LAV L + + A + L + PF G+ + GV V + I +TT D + I
Sbjct: 125 LAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIV 184
Query: 101 YPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPR 154
PN + I NF R V EF I V I +K + N ++S+ R
Sbjct: 185 IPNGKIIAGNIINFSREPVRRN---EFIIGVAYD-SDIDQVKQILTNIIQSEDR 234
>pdb|4AGE|A Chain A, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|B Chain B, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|C Chain C, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|D Chain D, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|E Chain E, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|F Chain F, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|G Chain G, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
Length = 286
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 41 LAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIF 100
LAV L + + A + L + PF G+ + GV V + I +TT D + I
Sbjct: 105 LAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIV 164
Query: 101 YPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPR 154
PN + I NF R V EF I V I +K + N ++S+ R
Sbjct: 165 IPNGKIIAGNIINFSREPVRRN---EFIIGVAYD-SDIDQVKQILTNIIQSEDR 214
>pdb|2VV5|A Chain A, The Open Structure Of Mscs
pdb|2VV5|B Chain B, The Open Structure Of Mscs
pdb|2VV5|C Chain C, The Open Structure Of Mscs
pdb|2VV5|D Chain D, The Open Structure Of Mscs
pdb|2VV5|E Chain E, The Open Structure Of Mscs
pdb|2VV5|F Chain F, The Open Structure Of Mscs
pdb|2VV5|G Chain G, The Open Structure Of Mscs
Length = 286
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 54 FEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISN 113
A + L + PF G+ + GV V + I +TT D + I PN + I N
Sbjct: 118 LAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIIN 177
Query: 114 FYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPR 154
F R V EF I V I +K + N ++S+ R
Sbjct: 178 FSREPVRRN---EFIIGVAYD-SDIDQVKQILTNIIQSEDR 214
>pdb|4AGF|A Chain A, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|B Chain B, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|C Chain C, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|D Chain D, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|E Chain E, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|F Chain F, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|G Chain G, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
Length = 286
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 41 LAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIF 100
LAV L + + A + + PF G+ + GV V + I +TT D + I
Sbjct: 105 LAVGLALQGSLSNLAAGVLCVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIV 164
Query: 101 YPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPR 154
PN + I NF R V EF I V I +K + N ++S+ R
Sbjct: 165 IPNGKIIAGNIINFSREPVRRN---EFIIGVAYD-SDIDQVKQILTNIIQSEDR 214
>pdb|3HY8|A Chain A, Crystal Structure Of Human Pyridoxine 5'-Phosphate Oxidase
R229w Mutant
Length = 261
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 187 YEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATSTVPLPEK 237
Y E +NR+ + +K++ EE A +H P+ Q+ VVS S+V +P++
Sbjct: 132 YWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSV-IPDR 181
>pdb|1NRG|A Chain A, Structure And Properties Of Recombinant Human
Pyridoxine-5'-Phosphate Oxidase
Length = 261
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 187 YEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATSTVPLPEK 237
Y E +NR+ + +K++ EE A +H P+ Q+ VVS S+V +P++
Sbjct: 132 YWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSV-IPDR 181
>pdb|3T9N|A Chain A, Crystal Structure Of A Membrane Protein
pdb|3T9N|B Chain B, Crystal Structure Of A Membrane Protein
pdb|3T9N|C Chain C, Crystal Structure Of A Membrane Protein
pdb|3T9N|D Chain D, Crystal Structure Of A Membrane Protein
pdb|3T9N|E Chain E, Crystal Structure Of A Membrane Protein
pdb|3T9N|F Chain F, Crystal Structure Of A Membrane Protein
pdb|3T9N|G Chain G, Crystal Structure Of A Membrane Protein
Length = 282
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 47 GNTAKNVFEAII---FLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPN 103
G A+N+ + +I F+ F VGD I+G+ VEE+ + T + + PN
Sbjct: 107 GFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISGTVEEIGLRVTKIRGFSDGLHIIPN 166
Query: 104 SVLATKPISNFYRSTVDMRDAVEFAID 130
+ K ++N + ++ + F ID
Sbjct: 167 GEI--KMVTNLTKDSMMAVVNIAFPID 191
>pdb|4HW9|A Chain A, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|B Chain B, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|C Chain C, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|D Chain D, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|E Chain E, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|F Chain F, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|G Chain G, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
Length = 309
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 64 HPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLA 107
HPF GD I G++ VE ++ T+ +D PN +A
Sbjct: 141 HPFKKGDIIEISGLEGKVEALNFFNTSLRLHDGRLAVLPNRSVA 184
>pdb|3UDC|A Chain A, Crystal Structure Of A Membrane Protein
pdb|3UDC|B Chain B, Crystal Structure Of A Membrane Protein
pdb|3UDC|C Chain C, Crystal Structure Of A Membrane Protein
pdb|3UDC|D Chain D, Crystal Structure Of A Membrane Protein
pdb|3UDC|E Chain E, Crystal Structure Of A Membrane Protein
pdb|3UDC|F Chain F, Crystal Structure Of A Membrane Protein
pdb|3UDC|G Chain G, Crystal Structure Of A Membrane Protein
Length = 285
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 47 GNTAKNVFEAII---FLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPN 103
G A+N+ + +I F+ F VGD I+G+ VEE+ + T + + PN
Sbjct: 107 GFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISGTVEEIGLRVTKIRGFSDGLHIIPN 166
Query: 104 SVLATKPISNFYRSTVDMRDAVEFAID 130
+ K ++N + ++ + F ID
Sbjct: 167 GEI--KMVTNLTKDSMMAVVNIAFPID 191
>pdb|1TMI|A Chain A, Structure Of Thermotoga Maritima S63a Non-Processing
Mutant S-Adenosylmethionine Decarboxylase
pdb|1TMI|B Chain B, Structure Of Thermotoga Maritima S63a Non-Processing
Mutant S-Adenosylmethionine Decarboxylase
Length = 130
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 70 DRCVIDGVQMVVEEMH---------ILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
DR V+D VQ++ +EM I+T+TF R F P V IS + +
Sbjct: 16 DREVLDNVQLIEQEMKQAAYESGATIVTSTFHR------FLPYGVSGVVVISEAHLTIHT 69
Query: 121 MRDAVEFAIDVFTPIEKISYLKS--TIKNYLESKPRH 155
+ AID+FT E + K+ +K L++K H
Sbjct: 70 WPEYGYAAIDLFTCGEDVDPWKAFEHLKKALKAKRVH 106
>pdb|1TLU|A Chain A, Crystal Structure Of Thermotoga Maritima S-
Adenosylmethionine Decarboxylase
pdb|1TLU|B Chain B, Crystal Structure Of Thermotoga Maritima S-
Adenosylmethionine Decarboxylase
Length = 130
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 70 DRCVIDGVQMVVEEMH---------ILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
DR V+D VQ++ +EM I+T+TF R F P V IS + +
Sbjct: 16 DREVLDNVQLIEQEMKQAAYESGATIVTSTFHR------FLPYGVSGVVVISESHLTIHT 69
Query: 121 MRDAVEFAIDVFTPIEKISYLKS--TIKNYLESKPRH 155
+ AID+FT E + K+ +K L++K H
Sbjct: 70 WPEYGYAAIDLFTCGEDVDPWKAFEHLKKALKAKRVH 106
>pdb|2HG6|A Chain A, Solution Nmr Structure Of Protein Pa1123 From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Pat4; Ontario Centre For Structural Proteomics
Target Pa1123
Length = 128
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 157 SPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKR 203
+PT V ++D+ M +G I++ +N E++N L++ L+R
Sbjct: 69 TPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRR 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,609,715
Number of Sequences: 62578
Number of extensions: 206222
Number of successful extensions: 431
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 16
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)