Query 026550
Match_columns 237
No_of_seqs 120 out of 1256
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 16:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 100.0 2.2E-49 7.6E-54 337.2 24.5 216 3-229 68-284 (286)
2 3udc_A Small-conductance mecha 100.0 9.5E-47 3.2E-51 320.9 28.9 216 3-229 67-283 (285)
3 1nz9_A Transcription antitermi 91.6 0.82 2.8E-05 28.2 6.5 42 64-105 3-54 (58)
4 2e6z_A Transcription elongatio 89.7 0.37 1.3E-05 30.1 3.6 43 64-106 6-56 (59)
5 2do3_A Transcription elongatio 88.3 1.2 4.3E-05 28.6 5.4 24 62-85 14-42 (69)
6 3sgr_A Tandem repeat of amyloi 84.3 0.71 2.4E-05 22.5 2.0 16 68-83 6-24 (25)
7 4b6m_A Tubulin-specific chaper 70.6 5.4 0.00019 26.6 3.9 22 64-85 4-27 (84)
8 3cnr_A Type IV fimbriae assemb 69.5 4.8 0.00016 28.6 3.7 25 50-74 26-50 (117)
9 3p8b_B Transcription antitermi 68.9 13 0.00045 27.3 6.3 43 64-106 90-142 (152)
10 2cp3_A CLIP-115, KIAA0291; mic 68.6 5.5 0.00019 26.6 3.6 24 63-86 5-29 (84)
11 2cqa_A RUVB-like 2; TIP48, TIP 66.7 3 0.0001 28.6 2.0 25 63-87 60-84 (95)
12 1txq_A Dynactin 1; protein com 65.3 7.5 0.00026 26.4 3.9 24 63-86 10-35 (93)
13 2cp6_A Restin; microtubule bin 65.3 7 0.00024 29.7 4.0 25 62-86 35-60 (172)
14 2e3i_A Restin; CAP-Gly, cytopl 64.8 7.2 0.00025 26.1 3.7 22 65-86 2-24 (86)
15 3rdv_A CAP-Gly domain-containi 63.3 7.6 0.00026 25.1 3.4 23 65-87 2-25 (72)
16 2coy_A Dynactin-1; microtubule 61.1 9.6 0.00033 26.9 3.9 24 63-86 31-56 (112)
17 1whh_A Clipr-59; microtubule b 61.0 9.2 0.00031 26.5 3.7 24 63-86 23-47 (102)
18 2cow_A Kinesin-like protein KI 60.6 8.5 0.00029 26.6 3.5 22 65-86 23-45 (100)
19 1ixd_A Cylindromatosis tumour- 60.3 9.1 0.00031 26.6 3.6 24 63-86 15-41 (104)
20 1lpl_A Hypothetical 25.4 kDa p 59.4 9.3 0.00032 26.1 3.5 23 64-86 10-37 (95)
21 2cp0_A Clipr-59 protein, clipr 59.3 9.6 0.00033 26.0 3.5 25 62-86 13-38 (95)
22 3mxu_A Glycine cleavage system 58.7 9.9 0.00034 28.0 3.8 56 60-117 57-113 (143)
23 2jvv_A Transcription antitermi 58.5 27 0.00091 26.4 6.5 35 64-98 126-168 (181)
24 2e3h_A Restin; CAP-Gly, cytopl 57.7 12 0.00042 25.2 3.8 21 66-86 2-23 (90)
25 2cp5_A Restin; microtubule bin 57.5 11 0.00037 27.7 3.8 23 64-86 63-86 (141)
26 1whj_A 1700024K14RIK, riken cD 57.0 10 0.00035 26.2 3.4 24 63-86 22-46 (102)
27 2coz_A CAP350, centrosome-asso 55.6 13 0.00045 26.6 3.9 23 64-86 30-53 (122)
28 1mww_A Hypothetical protein HI 55.6 48 0.0016 23.2 7.1 93 127-229 4-108 (128)
29 2f9h_A PTS system, IIA compone 52.8 14 0.00047 26.8 3.6 23 64-86 53-75 (129)
30 2cp2_A CLIP-115, KIAA0291; mic 52.6 10 0.00035 25.9 2.8 23 64-86 17-40 (95)
31 3fo8_D Tail sheath protein GP1 52.3 13 0.00044 30.1 3.7 36 65-108 27-70 (283)
32 3klr_A Glycine cleavage system 51.8 15 0.0005 26.4 3.6 55 60-116 35-90 (125)
33 3mlq_E Transcription-repair co 51.0 31 0.0011 21.9 4.8 51 64-116 1-60 (71)
34 2xhc_A Transcription antitermi 49.6 45 0.0016 28.3 7.0 44 63-106 296-349 (352)
35 3iuw_A Activating signal coint 49.3 29 0.00098 23.0 4.5 31 60-92 32-67 (83)
36 1q6w_A Monoamine oxidase regul 48.5 39 0.0013 24.5 5.8 43 58-100 99-147 (161)
37 3exz_A MAOC-like dehydratase; 48.1 42 0.0014 24.4 5.9 43 59-101 85-135 (154)
38 2pls_A CBS domain protein; APC 47.7 52 0.0018 21.3 5.8 28 58-85 46-73 (86)
39 4he6_A Peptidase family U32; u 46.9 10 0.00035 25.2 2.1 40 58-99 22-61 (89)
40 3bde_A MLL5499 protein; stress 46.7 38 0.0013 23.8 5.2 65 112-179 13-77 (120)
41 2eqj_A Metal-response element- 46.4 27 0.00094 22.0 3.8 33 65-97 13-52 (66)
42 3lae_A UPF0053 protein HI0107; 46.0 28 0.00097 22.4 4.2 32 54-85 38-69 (81)
43 4ffu_A Oxidase; structural gen 45.9 49 0.0017 24.8 6.1 42 60-101 111-160 (176)
44 3mlc_A FG41 malonate semialdeh 45.6 80 0.0027 22.5 7.9 96 125-230 3-114 (136)
45 1whk_A 1700024K14RIK, riken cD 45.5 12 0.0004 25.4 2.1 24 63-86 10-35 (91)
46 1whl_A Cylindromatosis tumor s 45.4 17 0.00059 24.7 3.0 24 63-86 5-34 (95)
47 2p9r_A Alpha-2-M, alpha-2-macr 45.3 9.6 0.00033 25.8 1.8 42 58-99 4-50 (102)
48 3hgb_A Glycine cleavage system 44.8 19 0.00066 26.8 3.4 56 60-117 62-118 (155)
49 3tzu_A GCVH, glycine cleavage 44.3 13 0.00046 27.1 2.4 56 60-117 52-108 (137)
50 2aal_A Malonate semialdehyde d 42.8 84 0.0029 22.0 11.7 93 126-229 5-114 (131)
51 1whg_A Tubulin specific chaper 42.5 31 0.0011 24.2 4.1 24 63-86 30-58 (113)
52 3j21_U 50S ribosomal protein L 42.4 22 0.00076 25.3 3.3 21 65-85 45-70 (121)
53 2eif_A IF-5A, protein (eukaryo 41.9 27 0.00091 25.3 3.8 37 63-99 13-60 (136)
54 1khi_A HEX1; membrane sealing, 41.0 27 0.00094 26.5 3.8 25 63-87 37-61 (176)
55 2z0w_A CAP-Gly domain-containi 40.3 11 0.00037 25.8 1.3 24 63-86 8-32 (96)
56 1vq8_T 50S ribosomal protein L 39.2 25 0.00085 25.0 3.1 21 65-85 42-67 (120)
57 2k4k_A GSP13, general stress p 38.2 86 0.0029 22.2 6.1 44 64-112 3-46 (130)
58 1iq6_A (R)-hydratase, (R)-spec 37.8 43 0.0015 23.1 4.4 19 58-76 80-98 (134)
59 2o3g_A Putative protein; APC85 37.0 67 0.0023 21.1 5.0 30 56-85 50-79 (92)
60 2p4p_A Hypothetical protein HD 36.6 75 0.0026 20.6 5.2 30 56-85 42-71 (86)
61 1bkb_A Translation initiation 36.5 36 0.0012 24.6 3.8 42 63-104 11-65 (136)
62 3llb_A Uncharacterized protein 36.4 37 0.0013 22.0 3.6 31 56-86 40-70 (83)
63 2oai_A Hemolysin; PFAM03471, x 35.6 75 0.0026 21.0 5.1 32 54-85 50-81 (94)
64 2zzd_A Thiocyanate hydrolase s 35.3 38 0.0013 24.3 3.6 13 64-76 35-47 (126)
65 2rcn_A Probable GTPase ENGC; Y 35.2 35 0.0012 29.0 4.0 41 66-106 81-133 (358)
66 2zkr_t 60S ribosomal protein L 34.9 31 0.0011 25.4 3.1 21 65-85 48-74 (145)
67 2zjr_R 50S ribosomal protein L 34.9 32 0.0011 24.2 3.1 21 65-85 15-40 (115)
68 3v2d_Y 50S ribosomal protein L 34.8 39 0.0013 23.6 3.5 22 65-86 6-32 (110)
69 3a7l_A H-protein, glycine clea 34.3 32 0.0011 24.7 3.1 48 66-113 45-92 (128)
70 3ftj_A MACB, macrolide export 34.1 54 0.0018 25.0 4.8 77 67-152 123-200 (226)
71 2jv2_A Putative uncharacterize 33.8 27 0.00091 23.1 2.4 14 62-75 38-51 (83)
72 2z0t_A Putative uncharacterize 33.4 39 0.0013 23.6 3.3 19 66-84 34-54 (109)
73 3ded_A Probable hemolysin; str 33.3 50 0.0017 22.9 4.0 33 54-86 69-101 (113)
74 2fhd_A RAD9 homolog, DNA repai 33.3 1.1E+02 0.0037 22.5 5.8 20 66-85 64-86 (153)
75 3cpf_A Eukaryotic translation 32.4 46 0.0016 24.1 3.8 26 62-87 8-33 (138)
76 1iz6_A Initiation factor 5A; S 32.2 47 0.0016 24.1 3.8 42 63-104 9-63 (138)
77 3u5e_Y L33, YL33, 60S ribosoma 31.9 38 0.0013 24.3 3.1 22 65-86 49-75 (127)
78 1zko_A Glycine cleavage system 31.4 37 0.0013 24.6 3.1 48 66-113 53-100 (136)
79 3er0_A Eukaryotic translation 31.3 48 0.0016 25.0 3.8 26 62-87 32-57 (167)
80 2pli_A Uncharacterized protein 30.9 76 0.0026 20.8 4.5 30 56-85 49-78 (91)
81 1whm_A Cylindromatosis tumor s 30.7 69 0.0024 21.6 4.1 23 64-86 8-34 (92)
82 2qqr_A JMJC domain-containing 30.6 1.4E+02 0.0048 21.0 6.3 34 63-96 3-41 (118)
83 2nqw_A CBS domain protein; PFA 30.3 53 0.0018 21.7 3.6 32 54-85 49-80 (93)
84 2k52_A Uncharacterized protein 29.6 1.1E+02 0.0037 19.4 5.2 41 66-111 3-43 (80)
85 4a17_S RPL26, 60S ribosomal pr 28.8 46 0.0016 24.2 3.1 22 65-86 48-74 (135)
86 3hks_A EIF-5A-2, eukaryotic tr 28.2 59 0.002 24.5 3.8 27 61-87 29-55 (167)
87 3r8s_U 50S ribosomal protein L 28.2 63 0.0022 22.2 3.7 23 64-86 2-29 (102)
88 1x6o_A Eukaryotic initiation f 28.2 58 0.002 24.7 3.8 28 59-86 29-56 (174)
89 3iz5_Y 60S ribosomal protein L 27.7 48 0.0017 24.5 3.1 22 65-86 48-74 (150)
90 1vq8_Q 50S ribosomal protein L 27.7 1.1E+02 0.0037 20.8 4.7 31 63-93 31-76 (96)
91 1xne_A Hypothetical protein PF 27.4 66 0.0022 22.5 3.7 11 66-76 35-45 (113)
92 3ir3_A HTD2, 3-hydroxyacyl-thi 27.3 1.1E+02 0.0036 21.9 5.1 19 58-76 90-108 (148)
93 2qn6_B Translation initiation 27.2 1.4E+02 0.0048 19.9 9.3 70 136-211 18-87 (93)
94 1yby_A Translation elongation 27.0 60 0.0021 25.5 3.8 49 56-105 28-88 (215)
95 2c2i_A RV0130; hotdog, hydrata 26.4 75 0.0026 22.5 4.1 18 60-77 94-111 (151)
96 3mb2_A 4-oxalocrotonate tautom 26.2 1.2E+02 0.004 18.6 5.7 47 125-171 4-50 (72)
97 3j21_R 50S ribosomal protein L 25.9 1.2E+02 0.0042 20.5 4.7 30 63-92 32-76 (97)
98 2x4k_A 4-oxalocrotonate tautom 25.3 1E+02 0.0036 17.8 5.4 45 125-169 6-50 (63)
99 1otf_A 4-oxalocrotonate tautom 25.0 1.1E+02 0.0037 17.8 5.7 47 125-171 3-49 (62)
100 1t9h_A YLOQ, probable GTPase E 24.5 30 0.001 28.7 1.7 27 67-93 52-81 (307)
101 2ftc_K 39S ribosomal protein L 24.2 84 0.0029 21.4 3.6 36 65-106 3-38 (98)
102 1use_A VAsp, vasodilator-stimu 23.9 1E+02 0.0034 17.8 3.3 18 192-209 26-43 (45)
103 3qyh_B CO-type nitrIle hydrata 23.9 67 0.0023 25.3 3.5 12 65-76 130-141 (219)
104 3oyy_A EF-P, elongation factor 23.9 76 0.0026 24.4 3.8 26 62-87 6-31 (191)
105 3tre_A EF-P, elongation factor 23.7 77 0.0026 24.3 3.8 27 61-87 7-33 (191)
106 3r8s_P 50S ribosomal protein L 23.2 91 0.0031 21.9 3.7 14 62-75 14-28 (114)
107 3hht_B NitrIle hydratase beta 23.1 71 0.0024 25.4 3.6 13 64-76 140-152 (229)
108 3v2d_T 50S ribosomal protein L 23.1 93 0.0032 22.8 3.9 25 48-74 5-30 (146)
109 1yez_A MM1357; MAR30, autostru 22.5 85 0.0029 19.3 3.3 38 63-105 8-45 (68)
110 4f3q_A Transcriptional regulat 22.4 3E+02 0.01 22.0 7.5 58 143-211 67-126 (247)
111 2hi6_A UPF0107 protein AF0055; 22.4 32 0.0011 25.2 1.3 17 66-82 114-130 (141)
112 2opa_A Probable tautomerase YW 22.1 1.2E+02 0.0043 17.5 5.4 46 125-170 3-48 (61)
113 1onl_A Glycine cleavage system 21.8 55 0.0019 23.3 2.5 50 66-115 44-93 (128)
114 2khi_A 30S ribosomal protein S 21.4 1.7E+02 0.0058 19.9 5.0 41 63-108 25-65 (115)
115 3bgu_A Ferredoxin-like protein 21.3 86 0.0029 21.7 3.4 44 112-155 13-56 (116)
116 4e3e_A MAOC domain protein deh 21.1 1.8E+02 0.0063 24.2 6.1 17 60-76 93-109 (352)
117 1kon_A Protein YEBC, YEBC; alp 21.1 3.2E+02 0.011 21.8 7.2 58 143-211 67-126 (249)
118 2r2z_A Hemolysin; APC85144, en 21.0 1.3E+02 0.0043 19.7 4.1 32 54-85 45-78 (93)
119 3abf_A 4-oxalocrotonate tautom 20.9 1.4E+02 0.0047 17.5 6.4 46 125-170 4-49 (64)
120 2b3n_A Hypothetical protein AF 20.8 1.3E+02 0.0046 21.8 4.6 40 57-100 107-150 (159)
121 1ugp_B NitrIle hydratase beta 20.7 85 0.0029 24.8 3.6 12 65-76 138-149 (226)
122 2khj_A 30S ribosomal protein S 20.4 52 0.0018 22.4 2.1 43 64-111 27-69 (109)
123 3f5o_A Thioesterase superfamil 20.3 66 0.0023 22.8 2.8 43 56-101 84-131 (148)
124 1mw7_A Hypothetical protein HP 20.2 3.3E+02 0.011 21.6 7.5 56 143-209 62-117 (240)
125 1lfp_A Hypothetical protein AQ 20.2 3.3E+02 0.011 21.8 7.0 43 158-211 81-123 (249)
126 1g5v_A SurviVal motor neuron p 20.1 2E+02 0.0067 19.0 6.5 45 64-108 9-62 (88)
127 4hpv_A S-adenosylmethionine sy 20.1 4.2E+02 0.014 22.8 9.5 80 125-208 164-251 (407)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=100.00 E-value=2.2e-49 Score=337.18 Aligned_cols=216 Identities=19% Similarity=0.249 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEEEE
Q 026550 3 ELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVE 82 (237)
Q Consensus 3 ~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~V~ 82 (237)
.+.+++++++++++++.++..+|++++++++++|++|+++|||+|++++|++ ||++|+++|||++||||+++|..|+|+
T Consensus 68 ~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~q~~l~n~~-sGi~i~~~~pf~vGD~I~i~g~~G~V~ 146 (286)
T 2vv5_A 68 FLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLA-AGVLLVMFRPFRAGEYVDLGGVAGTVL 146 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHTTCSSCTTCEEESSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHhcCCccCCCEEEECCEEEEEE
Confidence 4788999999999999999999999999999999999999999999999966 889999999999999999999999999
Q ss_pred EEEeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCC-CCCcE
Q 026550 83 EMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW-SPTHS 161 (237)
Q Consensus 83 ~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~-~~~~~ 161 (237)
+|++|+|+++++||+.++|||+.+.+++++|||+.+ .++..++++++|++|+++ +++.++++++++|.+. +|+|.
T Consensus 147 ~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~-~~r~~~~v~v~y~~d~~~---v~~~l~~~~~~~~~vl~~p~p~ 222 (286)
T 2vv5_A 147 SVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP-VRRNEFIIGVAYDSDIDQ---VKQILTNIIQSEDRILKDREMT 222 (286)
T ss_dssp EECSSEEEEECTTSCEEEEEHHHHHTSCEEESSSSS-EEEEEEEEEECTTSCHHH---HHHHHHHHHHHCTTBCTTSCEE
T ss_pred EEEeEEEEEEeCCCCEEEechHHHhhCceEECCCCC-cEEEEEEEEEcCCCCHHH---HHHHHHHHHHhCcccccCCCCE
Confidence 999999999999999999999999999999999998 788899999999999877 8889999999999987 78899
Q ss_pred EEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEeeecCCC
Q 026550 162 VVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSAT 229 (237)
Q Consensus 162 v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~~~~~~ 229 (237)
+.+.+++++++++++++|+. ..++|..+++++++++++|+++||+ +|+|+++++..++++..
T Consensus 223 v~v~~~~~~~i~~~v~~~~~-----~~~~~~~~~~l~~~i~~~~~~~gI~-ip~P~~~v~~~~~~~~~ 284 (286)
T 2vv5_A 223 VRLNELGASSINFVVRVWSN-----SGDLQNVYWDVLERIKREFDAAGIS-FPYPQMDVNFKRVKEDK 284 (286)
T ss_dssp EEEEEECSSSEEEEEEEEEE-----TTTHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECC----
T ss_pred EEEEEecCCeEEEEEEEEEc-----cchHHHHHHHHHHHHHHHHHHCCCc-CCCCceEEEeccCCccc
Confidence 99999999999999999873 3578999999999999999999999 99999999998765543
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=100.00 E-value=9.5e-47 Score=320.94 Aligned_cols=216 Identities=18% Similarity=0.253 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEEEE
Q 026550 3 ELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVE 82 (237)
Q Consensus 3 ~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~V~ 82 (237)
.+.+++++++++++++.++..+|++.+++++++|++|+++|||+|++++|++ ||++++++|||++||||+++|..|+|+
T Consensus 67 ~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~-~Gi~i~~~~pf~vGD~I~i~~~~G~V~ 145 (285)
T 3udc_A 67 LTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMI-SGFFIIFEDQFSVGDYVTINGISGTVE 145 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHTTSCCTTCEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCCccCCCEEEECCEEEEEE
Confidence 3567889999999999999999999999999999999999999999999966 889999999999999999999999999
Q ss_pred EEEeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHH-HHHHHHHHHhhCCCCCCCCcE
Q 026550 83 EMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISY-LKSTIKNYLESKPRHWSPTHS 161 (237)
Q Consensus 83 ~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~-~~~~i~~~l~~~~~~~~~~~~ 161 (237)
+|++|+|+++++||+.+++||+++ ++++|||+.+ .+..+++.++|++|++++.+ +++.+++..+.++...++++.
T Consensus 146 ~I~l~~T~i~t~d~~~v~iPN~~l--~~i~N~s~~~--~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~~~~~~~~~ 221 (285)
T 3udc_A 146 EIGLRVTKIRGFSDGLHIIPNGEI--KMVTNLTKDS--MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDDLIEGPTV 221 (285)
T ss_dssp EECSSEEEEEETTTEEEEEEGGGC--SCEEECSSSC--EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCSSBSSCCEE
T ss_pred EeeeeEEEEecCCCCEEEeccccc--ccccccCCCC--ceEEEEEeeecCCCHHHHHHHHHHHHHHHHhcccccccCccc
Confidence 999999999999999999999999 4699999876 45678999999999988544 344455555555555577788
Q ss_pred EEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEeeecCCC
Q 026550 162 VVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSAT 229 (237)
Q Consensus 162 v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~~~~~~ 229 (237)
+.+.+++++++++++++|+ ++.++|..+++++.+++++|+++||+ +|||++++|.++.++..
T Consensus 222 v~~~~~~~s~i~~~v~~~~-----~~~~~~~~~~~l~~~I~~~f~~~gI~-ipfP~~~v~~~~~~e~k 283 (285)
T 3udc_A 222 LGITDMQDSKLVIMVYAKT-----QPMQKWAVERDIRYRVKKMFDQKNIS-FPYPQMDVNFKRVKEDK 283 (285)
T ss_dssp EEEEEEETTEEEEEEEEEE-----STTCHHHHHHHHHHHHHHHHHHTTCC-CCCCCCEEEEEEC----
T ss_pred ccccccCCCEEEEEEEEEE-----CcchHHHHHHHHHHHHHHHHHHCCCc-CcCCCEEEEeCcCCCCC
Confidence 9999999999999999975 55678999999999999999999999 99999999998866543
No 3
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=91.56 E-value=0.82 Score=28.17 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=29.4
Q ss_pred CCCCCCcEEEE-c----CeeEEEEEEEe---EEEEEEEeCCcE--EEEeccc
Q 026550 64 HPFDVGDRCVI-D----GVQMVVEEMHI---LTTTFLRYDNEK--IFYPNSV 105 (237)
Q Consensus 64 ~pf~vGD~I~i-~----~~~G~V~~I~l---~~T~i~~~~g~~--v~IPNs~ 105 (237)
-+|++||.|+| + |..|.|.+++. +.+...+.-|+. +-+++++
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~ 54 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQ 54 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGG
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHH
Confidence 47899999999 2 58899999975 345556666655 4444443
No 4
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.67 E-value=0.37 Score=30.06 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=27.4
Q ss_pred CCCCCCcEEEE-c----CeeEEEEEEEeEEEEEEEe---CCcEEEEecccc
Q 026550 64 HPFDVGDRCVI-D----GVQMVVEEMHILTTTFLRY---DNEKIFYPNSVL 106 (237)
Q Consensus 64 ~pf~vGD~I~i-~----~~~G~V~~I~l~~T~i~~~---~g~~v~IPNs~l 106 (237)
-.|.+||.|+| + |..|+|++++--..++.-. -.+.+.+|++++
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v~~fg~~tpvel~~~qv 56 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQEL 56 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEECCSSCCSCEEEETTTE
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEEEecCCCceEEEcHHHE
Confidence 46999999999 3 4889999987532222210 134566666655
No 5
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=88.33 E-value=1.2 Score=28.57 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.1
Q ss_pred eeCCCCCCcEEEE-----cCeeEEEEEEE
Q 026550 62 VTHPFDVGDRCVI-----DGVQMVVEEMH 85 (237)
Q Consensus 62 ~~~pf~vGD~I~i-----~~~~G~V~~I~ 85 (237)
+.|-|++||.|++ .|..|.|.++.
T Consensus 14 LrK~F~~GDHVkVi~G~~~getGlVV~v~ 42 (69)
T 2do3_A 14 LRKYFKMGDHVKVIAGRFEGDTGLIVRVE 42 (69)
T ss_dssp CCSSCCTTCEEEESSSTTTTCEEEEEEEC
T ss_pred ceeeccCCCeEEEeccEEcCceEEEEEEe
Confidence 4688999999999 34789999885
No 6
>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}
Probab=84.33 E-value=0.71 Score=22.49 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=12.8
Q ss_pred CCcEEEEcC---eeEEEEE
Q 026550 68 VGDRCVIDG---VQMVVEE 83 (237)
Q Consensus 68 vGD~I~i~~---~~G~V~~ 83 (237)
.||.|+++| +.|.|.+
T Consensus 6 lgdvievggklkvlgdvie 24 (25)
T 3sgr_A 6 LGDVIEVGGKLKVLGDVIE 24 (26)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred eeeeeeeCcEEEEeeeEEe
Confidence 489999988 5588876
No 7
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=70.56 E-value=5.4 Score=26.62 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=17.9
Q ss_pred CCCCCCcEEEE--cCeeEEEEEEE
Q 026550 64 HPFDVGDRCVI--DGVQMVVEEMH 85 (237)
Q Consensus 64 ~pf~vGD~I~i--~~~~G~V~~I~ 85 (237)
+.++|||+|++ ++..|+|.-++
T Consensus 4 ~~i~vG~Rv~v~~~~~~G~VryvG 27 (84)
T 4b6m_A 4 ETIHVGDRCLCRPGDRLGSVRFVG 27 (84)
T ss_dssp -CCCTTCEEEETTTTEEEEEEEEE
T ss_pred cCcccCCEEEEcCCCeEEEEEEEe
Confidence 46899999999 45779998887
No 8
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=69.45 E-value=4.8 Score=28.62 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=20.4
Q ss_pred HHHHHHhhhheeeeCCCCCCcEEEE
Q 026550 50 AKNVFEAIIFLFVTHPFDVGDRCVI 74 (237)
Q Consensus 50 ~~n~~~~gi~i~~~~pf~vGD~I~i 74 (237)
..|+=.||+||-.++|+++||.|.+
T Consensus 26 ~~~is~GGlFI~T~~~~~~G~~V~l 50 (117)
T 3cnr_A 26 MPFVKGGGIFVPTPKRYMLGDEVFL 50 (117)
T ss_dssp ETTBTTCEEEEECCSCCCTTCEEEE
T ss_pred hcccCCCeEEEeeCCccCCCCEEEE
Confidence 3343348999999999999999976
No 9
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=68.85 E-value=13 Score=27.34 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=28.5
Q ss_pred CCCCCCcEEEE-c----CeeEEEEEEEeEE---EEEEEeCCc--EEEEecccc
Q 026550 64 HPFDVGDRCVI-D----GVQMVVEEMHILT---TTFLRYDNE--KIFYPNSVL 106 (237)
Q Consensus 64 ~pf~vGD~I~i-~----~~~G~V~~I~l~~---T~i~~~~g~--~v~IPNs~l 106 (237)
..|++||+|+| + |..|.|.+++... +.....-|+ .+.++.+++
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v 142 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYV 142 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGE
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHE
Confidence 46999999999 3 4889999997532 233333343 466666655
No 10
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=68.56 E-value=5.5 Score=26.57 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=19.9
Q ss_pred eCCCCCCcEEEEcC-eeEEEEEEEe
Q 026550 63 THPFDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 63 ~~pf~vGD~I~i~~-~~G~V~~I~l 86 (237)
.+.+++||+|++.+ ..|+|.-++-
T Consensus 5 ~~~~~vG~rv~v~g~~~GtVryvG~ 29 (84)
T 2cp3_A 5 SSGLRLGDRVLVGGTKTGVVRYVGE 29 (84)
T ss_dssp SCSCCTTCEEEETTTEEEEEEEEEE
T ss_pred ccccccCCEEEECCCCeEEEEEecc
Confidence 45699999999987 4799988874
No 11
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=66.65 E-value=3 Score=28.56 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.4
Q ss_pred eCCCCCCcEEEEcCeeEEEEEEEeE
Q 026550 63 THPFDVGDRCVIDGVQMVVEEMHIL 87 (237)
Q Consensus 63 ~~pf~vGD~I~i~~~~G~V~~I~l~ 87 (237)
..-.++||.|.|+...|.|.++|=-
T Consensus 60 kekV~~GDVI~Id~~sG~V~klGRs 84 (95)
T 2cqa_A 60 KDKVQAGDVITIDKATGKISKLGRS 84 (95)
T ss_dssp HTTCCTTSEEEEETTTTEEEEEECC
T ss_pred HcCceeCCEEEEEccCCEEEEEEEe
Confidence 3457899999999999999998853
No 12
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=65.28 E-value=7.5 Score=26.42 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=19.5
Q ss_pred eCCCCCCcEEEEc--CeeEEEEEEEe
Q 026550 63 THPFDVGDRCVID--GVQMVVEEMHI 86 (237)
Q Consensus 63 ~~pf~vGD~I~i~--~~~G~V~~I~l 86 (237)
.+.+++||+|++. +..|+|.-++-
T Consensus 10 ~~~~~vG~rv~v~~~~~~GtVryvG~ 35 (93)
T 1txq_A 10 ARPLRVGSRVEVIGKGHRGTVAYVGA 35 (93)
T ss_dssp -CCCCTTCEEEETTTCCEEEEEEEEC
T ss_pred cccCCCCCEEEECCCCeEEEEEEeee
Confidence 4679999999994 47899988885
No 13
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=65.25 E-value=7 Score=29.74 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.0
Q ss_pred eeCCCCCCcEEEEcC-eeEEEEEEEe
Q 026550 62 VTHPFDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 62 ~~~pf~vGD~I~i~~-~~G~V~~I~l 86 (237)
-.+.++|||+|++.| ..|+|.-+|-
T Consensus 35 ~~~~l~VG~RV~V~g~~~GtVRyvG~ 60 (172)
T 2cp6_A 35 GERELKIGDRVLVGGTKAGVVRFLGE 60 (172)
T ss_dssp CSSCCCSSCEEEETTTEEEEEEEEEE
T ss_pred CCccCccCCEEEECCCceEEEEEeCc
Confidence 467899999999977 7799988774
No 14
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=64.79 E-value=7.2 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.5
Q ss_pred CCCCCcEEEEcC-eeEEEEEEEe
Q 026550 65 PFDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 65 pf~vGD~I~i~~-~~G~V~~I~l 86 (237)
.+++||+|++.| ..|+|.-++-
T Consensus 2 ~~~vG~rv~v~g~~~GtVryvG~ 24 (86)
T 2e3i_A 2 DFRVGERVWVNGNKPGFIQFLGE 24 (86)
T ss_dssp CCCTTCEEEETTTEEEEEEEEEE
T ss_pred CccCCCEEEECCCcEEEEEEeee
Confidence 589999999977 4799988775
No 15
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=63.29 E-value=7.6 Score=25.05 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=18.3
Q ss_pred CCCCCcEEEEcC-eeEEEEEEEeE
Q 026550 65 PFDVGDRCVIDG-VQMVVEEMHIL 87 (237)
Q Consensus 65 pf~vGD~I~i~~-~~G~V~~I~l~ 87 (237)
-|++||+|++++ ..|+|.-++-.
T Consensus 2 ~~~vG~rv~v~g~~~G~VryvG~~ 25 (72)
T 3rdv_A 2 DFRVGERVWVNGNKPGFIQFLGET 25 (72)
T ss_dssp CCCTTCEEEETTTEEEEEEEEECC
T ss_pred CcccCCEEEECCCCEEEEEEeeeC
Confidence 479999999976 47888877654
No 16
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=61.12 E-value=9.6 Score=26.88 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=19.7
Q ss_pred eCCCCCCcEEEEc--CeeEEEEEEEe
Q 026550 63 THPFDVGDRCVID--GVQMVVEEMHI 86 (237)
Q Consensus 63 ~~pf~vGD~I~i~--~~~G~V~~I~l 86 (237)
.+.+++||+|++. +..|+|.-++-
T Consensus 31 ~~~l~VG~RV~V~~~g~~GtVRyvG~ 56 (112)
T 2coy_A 31 ARPLRVGSRVEVIGKGHRGTVAYVGA 56 (112)
T ss_dssp CCCCCTTCEEEETTTCCEEEEEEEEC
T ss_pred cccCCCCCEEEECCCCeEEEEEEeee
Confidence 3579999999994 47899988874
No 17
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=61.01 E-value=9.2 Score=26.49 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=19.7
Q ss_pred eCCCCCCcEEEEcC-eeEEEEEEEe
Q 026550 63 THPFDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 63 ~~pf~vGD~I~i~~-~~G~V~~I~l 86 (237)
.+.+++||+|++.| ..|+|.-++-
T Consensus 23 ~~~~~VG~RV~V~g~~~GtVryvG~ 47 (102)
T 1whh_A 23 GAKAEVGDQVLVAGQKQGIVRFYGK 47 (102)
T ss_dssp CCSSCTTSEEEETTTEEEEEEEEEE
T ss_pred cccCcCCCEEEECCCcEEEEEEeee
Confidence 35699999999976 5799988774
No 18
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=60.57 E-value=8.5 Score=26.56 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=18.9
Q ss_pred CCCCCcEEEEcC-eeEEEEEEEe
Q 026550 65 PFDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 65 pf~vGD~I~i~~-~~G~V~~I~l 86 (237)
.+++||+|++++ ..|+|.-++-
T Consensus 23 ~l~vG~rV~V~g~~~GtVryvG~ 45 (100)
T 2cow_A 23 WLREGEFVTVGAHKTGVVRYVGP 45 (100)
T ss_dssp SCCTTCEEECSSSCEEEEEEEEC
T ss_pred cccCCCEEEECCCcEEEEEEeee
Confidence 489999999975 7899998875
No 19
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=60.26 E-value=9.1 Score=26.61 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=19.8
Q ss_pred eCCCCCCcEEEEc---CeeEEEEEEEe
Q 026550 63 THPFDVGDRCVID---GVQMVVEEMHI 86 (237)
Q Consensus 63 ~~pf~vGD~I~i~---~~~G~V~~I~l 86 (237)
.+.++|||+|++. +..|+|.-|+-
T Consensus 15 ~~~l~VG~RV~V~~~~~~~GtVryvG~ 41 (104)
T 1ixd_A 15 SHGLEVGSLAEVKENPPFYGVIRWIGQ 41 (104)
T ss_dssp SSCCCTTSEEEECSSSCCCEEEEEEEC
T ss_pred CcccccCCEEEECcCCCcEEEEEEecc
Confidence 4679999999996 36799988874
No 20
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=59.45 E-value=9.3 Score=26.08 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.3
Q ss_pred CCCCCCcEEEEc-----CeeEEEEEEEe
Q 026550 64 HPFDVGDRCVID-----GVQMVVEEMHI 86 (237)
Q Consensus 64 ~pf~vGD~I~i~-----~~~G~V~~I~l 86 (237)
+.+++||+|++. +..|+|.-+|-
T Consensus 10 ~~~~vG~rv~V~~~g~~~~~GtVryvG~ 37 (95)
T 1lpl_A 10 KNIMVGNRCEVTVGAQMARRGEVAYVGA 37 (95)
T ss_dssp HTCCTTCEEEECCTTSCCEEEEEEEEEC
T ss_pred hcCCCCCEEEEccCCCCceEEEEEEecc
Confidence 458999999996 57899998885
No 21
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=59.33 E-value=9.6 Score=26.01 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.3
Q ss_pred eeCCCCCCcEEEEcC-eeEEEEEEEe
Q 026550 62 VTHPFDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 62 ~~~pf~vGD~I~i~~-~~G~V~~I~l 86 (237)
..+.+++||+|+++| ..|+|.-++-
T Consensus 13 ~~~~~~vG~RV~V~g~~~GtVryvG~ 38 (95)
T 2cp0_A 13 SALGLRLGDRVLLDGQKTGTLRFCGT 38 (95)
T ss_dssp HHHTCCTTCEEEETTTEEEEEEEEEC
T ss_pred cccCCCCCCEEEECCCCeEEEEEecc
Confidence 356799999999987 4799988874
No 22
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=58.68 E-value=9.9 Score=28.02 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=43.2
Q ss_pred eeeeCCCCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccC-CcEEEEEcC
Q 026550 60 LFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLAT-KPISNFYRS 117 (237)
Q Consensus 60 i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~-~~i~N~s~~ 117 (237)
.+.+=| ++||.++-|+..|.|+....-+...--.+|+++-+ |..+.+ -...|-+..
T Consensus 57 vfVelP-~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~Vvev-N~~L~d~PeliN~dPy 113 (143)
T 3mxu_A 57 VFIDLP-QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEI-NAALAESPELVNQKAE 113 (143)
T ss_dssp EEEECC-CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE-CGGGGTCTTHHHHSTT
T ss_pred EEEEcC-CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEE-hhhhhhChHhhhCCCC
Confidence 455656 99999999999999999998888777788998888 666555 345565443
No 23
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=58.51 E-value=27 Score=26.41 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=25.7
Q ss_pred CCCCCCcEEEE-c----CeeEEEEEEEe---EEEEEEEeCCcE
Q 026550 64 HPFDVGDRCVI-D----GVQMVVEEMHI---LTTTFLRYDNEK 98 (237)
Q Consensus 64 ~pf~vGD~I~i-~----~~~G~V~~I~l---~~T~i~~~~g~~ 98 (237)
-+|.+||.|+| + |..|.|++++- +.+...+.-|+.
T Consensus 126 ~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~ 168 (181)
T 2jvv_A 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRA 168 (181)
T ss_dssp CCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETTEE
T ss_pred ccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEECCCC
Confidence 37999999999 3 48899999973 455555555544
No 24
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=57.69 E-value=12 Score=25.21 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=17.9
Q ss_pred CCCCcEEEEcC-eeEEEEEEEe
Q 026550 66 FDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 66 f~vGD~I~i~~-~~G~V~~I~l 86 (237)
+++||+|++.| ..|+|.-++-
T Consensus 2 l~vG~rV~V~g~~~GtVryvG~ 23 (90)
T 2e3h_A 2 LKIGDRVLVGGTKAGVVRFLGE 23 (90)
T ss_dssp CCTTCEEEETTTEEEEEEEEEE
T ss_pred CcCCCEEEECCCCEEEEEEecc
Confidence 68999999977 5799988874
No 25
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=57.51 E-value=11 Score=27.72 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.3
Q ss_pred CCCCCCcEEEEcC-eeEEEEEEEe
Q 026550 64 HPFDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 64 ~pf~vGD~I~i~~-~~G~V~~I~l 86 (237)
..|+|||+|+++| ..|+|.-++-
T Consensus 63 ~~l~VG~RV~V~G~~~GtVRyvG~ 86 (141)
T 2cp5_A 63 DDFRVGERVWVNGNKPGFIQFLGE 86 (141)
T ss_dssp CCCCTTCEEEETTSCEEEEEEEEE
T ss_pred hcCcCCCEEEECCCcEEEEEEeee
Confidence 4699999999977 4799988875
No 26
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=57.00 E-value=10 Score=26.22 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=19.7
Q ss_pred eCCCCCCcEEEEcC-eeEEEEEEEe
Q 026550 63 THPFDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 63 ~~pf~vGD~I~i~~-~~G~V~~I~l 86 (237)
...+++||+|++.| ..|+|.-++-
T Consensus 22 ~~~~~vG~RV~V~g~~~GtVryvG~ 46 (102)
T 1whj_A 22 SLGLKLGDRVVIAGQKVGTLRFCGT 46 (102)
T ss_dssp HHTCCTTCEEEETTTEEEEEEEEEE
T ss_pred hhcCcCCCEEEECCCCEEEEEEeee
Confidence 45699999999977 5799988874
No 27
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=55.63 E-value=13 Score=26.59 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.4
Q ss_pred CCCCCCcEEEEcC-eeEEEEEEEe
Q 026550 64 HPFDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 64 ~pf~vGD~I~i~~-~~G~V~~I~l 86 (237)
..+++||+|++.+ ..|+|.-+|-
T Consensus 30 ~~l~VG~RV~V~g~~~GtVRyvG~ 53 (122)
T 2coz_A 30 FDFHIGDRVLIGNVQPGILRFKGE 53 (122)
T ss_dssp SSCCTTEEEEETTTEEEEEEEEEE
T ss_pred ccCcCCCEEEECCCcEEEEEEecc
Confidence 3589999999977 7899988875
No 28
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=55.62 E-value=48 Score=23.19 Aligned_cols=93 Identities=12% Similarity=0.022 Sum_probs=52.5
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEEeeeC-----------ceEEEEEEEEEeecccchHHHHHHHH
Q 026550 127 FAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-----------EKMIMGLYITHIIIFENYEEKINRRS 195 (237)
Q Consensus 127 ~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~v~~~~~~~-----------~~v~~~v~~~~~~~~~~~~~~~~~~~ 195 (237)
+.+....+.++.+.+.+.+.+++.+..+.......+.+....+ ..+.+.+... . ..-.+-+.
T Consensus 4 I~~~~g~s~e~~~~l~~~i~~al~~~lg~p~~~~~v~i~~~~~~~~~~gg~~~~~~~~i~i~~~-----~--grt~eqK~ 76 (128)
T 1mww_A 4 VFGLKSKLAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINLM-----A--GRMEGTKK 76 (128)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCTTSCTTCEEEEEEEE-----T--TCCHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEeChHHeecCCCCCCCcEEEEEEEC-----C--CCCHHHHH
Confidence 4444444556666677777777777666543333455554432 3344444432 1 11235677
Q ss_pred HHHHHHHHHHHH-cCCcccccCCceEEEeeecCCC
Q 026550 196 ELVLELKRIFEE-AAIRIYHVLPQEVQVSYVVSAT 229 (237)
Q Consensus 196 ~l~~~i~~~l~~-~gI~~~~~p~~~v~~~~~~~~~ 229 (237)
++..++.+.+.+ .|+. -....+.+.+.++..
T Consensus 77 ~l~~~l~~~l~~~lg~~---~~~v~V~i~e~~~~~ 108 (128)
T 1mww_A 77 RLIKMLFSELEYKLGIR---AHDVEITIKEQPAHC 108 (128)
T ss_dssp HHHHHHHHHHHHHHCCC---GGGEEEEEEEECGGG
T ss_pred HHHHHHHHHHHHHhCcC---hhhEEEEEEECCHHH
Confidence 888889988865 7865 344555566555443
No 29
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=52.78 E-value=14 Score=26.76 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.9
Q ss_pred CCCCCCcEEEEcCeeEEEEEEEe
Q 026550 64 HPFDVGDRCVIDGVQMVVEEMHI 86 (237)
Q Consensus 64 ~pf~vGD~I~i~~~~G~V~~I~l 86 (237)
..+++||.+.+|+...+|..+|-
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaVG~ 75 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKVGS 75 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEECT
T ss_pred CCcCCCCEEEECCEEEEEEEEhH
Confidence 57999999999999999998874
No 30
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=52.59 E-value=10 Score=25.87 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.2
Q ss_pred CCCCCCcEEEEcC-eeEEEEEEEe
Q 026550 64 HPFDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 64 ~pf~vGD~I~i~~-~~G~V~~I~l 86 (237)
..+++||+|++.+ ..|+|.-++-
T Consensus 17 ~~~~vG~rV~V~g~~~GtVryvG~ 40 (95)
T 2cp2_A 17 GDFVVGERVWVNGVKPGVVQYLGE 40 (95)
T ss_dssp CSCCTTCEEEGGGSCEEEEEEEEE
T ss_pred hcCcCCCEEEECCceEEEEEEecc
Confidence 4589999999976 5899988875
No 31
>3fo8_D Tail sheath protein GP18; mostly beta, viral structural protein, bacteriophage T4, viral protein; 1.80A {Enterobacteria phage T4}
Probab=52.34 E-value=13 Score=30.08 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=26.3
Q ss_pred CCCCCcEEEE--cC----eeEEEEEEEeEEEEEEEeCCcE--EEEecccccC
Q 026550 65 PFDVGDRCVI--DG----VQMVVEEMHILTTTFLRYDNEK--IFYPNSVLAT 108 (237)
Q Consensus 65 pf~vGD~I~i--~~----~~G~V~~I~l~~T~i~~~~g~~--v~IPNs~l~~ 108 (237)
-++|||.|+| ++ ..|+|.+++ .||++ ++||-+++..
T Consensus 27 nY~VGD~i~Vky~~~vve~~GkVT~VD--------~dGkI~~vfiPSakIIa 70 (283)
T 3fo8_D 27 NYAVGDKITVKYVSDDIETEGKITEVD--------ADGKIKKINIPTAKIIA 70 (283)
T ss_dssp SCCTTCEEEEEETTEEEEEEEEEEEEC--------TTCCEEEEECCCHHHHH
T ss_pred CceeCCEEEEEEcCcEEecCceEEEEc--------CCCCEEEEECChHHHHH
Confidence 4999999999 44 337776653 37876 6899988764
No 32
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=51.79 E-value=15 Score=26.45 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=42.0
Q ss_pred eeeeCCCCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccC-CcEEEEEc
Q 026550 60 LFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLAT-KPISNFYR 116 (237)
Q Consensus 60 i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~-~~i~N~s~ 116 (237)
.+.+=| ++||.++-|+..|.|+....-+...--.+|+++-+ |..+.+ -...|-..
T Consensus 35 v~velp-~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~Vvev-N~~l~~~P~liN~dp 90 (125)
T 3klr_A 35 VYCSLP-EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEI-NKALAENPGLVNKSC 90 (125)
T ss_dssp EEEECC-CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE-CGGGTTCTTHHHHCT
T ss_pred EEEEeC-CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEE-hhhhhhChHhhcCCC
Confidence 455556 99999999999999999998887777788888888 555544 45556443
No 33
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=51.01 E-value=31 Score=21.92 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=17.3
Q ss_pred CCCCCCcEEEEcC-eeEEEEEEEeE--------EEEEEEeCCcEEEEecccccCCcEEEEEc
Q 026550 64 HPFDVGDRCVIDG-VQMVVEEMHIL--------TTTFLRYDNEKIFYPNSVLATKPISNFYR 116 (237)
Q Consensus 64 ~pf~vGD~I~i~~-~~G~V~~I~l~--------~T~i~~~~g~~v~IPNs~l~~~~i~N~s~ 116 (237)
.||++||+|.=.. =-|++..|.-+ +-+++=.++..+++|-.++- .+.-|..
T Consensus 1 ~~l~~GD~VVh~~hGiG~~~gi~~~~v~g~~~ey~~l~y~~~~~l~VPv~~~~--~i~ry~g 60 (71)
T 3mlq_E 1 GPHMPGDYLIHPEHGVGQYLGLETREVLGVKRDYLVLRYKGEGKLYLPVEQLP--LLKRHPG 60 (71)
T ss_dssp ---------------CEEEEEEEEEEETTEEEEEEEEEETTTEEEEEESSSCC---------
T ss_pred CcCCCCCEEEECCCeeEEEeEEEEEEeCCeeEEEEEEEECCCCEEEEEhhhhc--ceeeecC
Confidence 4799999995422 23444433332 33444456778899988874 4665544
No 34
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=49.63 E-value=45 Score=28.29 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=31.6
Q ss_pred eCCCCCCcEEEE-c----CeeEEEEEEEe---EEEEEEEeCCcE--EEEecccc
Q 026550 63 THPFDVGDRCVI-D----GVQMVVEEMHI---LTTTFLRYDNEK--IFYPNSVL 106 (237)
Q Consensus 63 ~~pf~vGD~I~i-~----~~~G~V~~I~l---~~T~i~~~~g~~--v~IPNs~l 106 (237)
.-+|++||.|+| + |..|.|++++- |.+...+.=|+. +-++++++
T Consensus 296 ~~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVeL~~~qV 349 (352)
T 2xhc_A 296 ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEV 349 (352)
T ss_dssp -CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEETTEEEEEEEEGGGE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEEEchHHE
Confidence 347999999999 3 48899999975 556666666654 56666554
No 35
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=49.33 E-value=29 Score=22.99 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=19.8
Q ss_pred eeeeCCCCCCcEEEEcC-----eeEEEEEEEeEEEEEE
Q 026550 60 LFVTHPFDVGDRCVIDG-----VQMVVEEMHILTTTFL 92 (237)
Q Consensus 60 i~~~~pf~vGD~I~i~~-----~~G~V~~I~l~~T~i~ 92 (237)
-.-+|.|++||.+.+.. ..|+ ++..+-|.+.
T Consensus 32 R~nDr~~~vGD~l~l~E~~~g~yTGr--~i~~~Vt~i~ 67 (83)
T 3iuw_A 32 RKNDRNFQVGDILILEEYMNGMYLDD--ECEAEVIYIT 67 (83)
T ss_dssp EECCSCCCTTCEEEEEEEETTEEEEE--EEEEEEEEEE
T ss_pred EecccCCCCCCEEEEEEccCCCccCc--EEEEEEEEEc
Confidence 34577899999998743 3465 4444555553
No 36
>1q6w_A Monoamine oxidase regulatory protein, putative; structural genomics, nysgxrc T805, hot DOG fold; 2.81A {Archaeoglobus fulgidus} SCOP: d.38.1.4
Probab=48.52 E-value=39 Score=24.54 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=25.9
Q ss_pred hheeeeCCCCCCcEEEEcCeeEEEEE------EEeEEEEEEEeCCcEEE
Q 026550 58 IFLFVTHPFDVGDRCVIDGVQMVVEE------MHILTTTFLRYDNEKIF 100 (237)
Q Consensus 58 i~i~~~~pf~vGD~I~i~~~~G~V~~------I~l~~T~i~~~~g~~v~ 100 (237)
+-+-+.+|..+||.+.+....-.+.+ +-...+++.+.+|+.+.
T Consensus 99 ~~~rF~~PV~~Gd~l~~~~~v~~~~~~~~~~~~v~~~~~~~n~~g~~v~ 147 (161)
T 1q6w_A 99 KDVRFLRPVFIGDTIAASAEVVEKQDFDEKSGVVTYKLEVKNQRGELVL 147 (161)
T ss_dssp EEEEECSCCBTTCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEE
T ss_pred EEEEEecCCCCCCEEEEEEEEEEEEecCCCceEEEEEEEEEeCCCCEEE
Confidence 34678899999999988653322222 22233445556666554
No 37
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=48.13 E-value=42 Score=24.36 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=26.4
Q ss_pred heeeeCCCCCCcEEEEcCeeEEEEE------EE--eEEEEEEEeCCcEEEE
Q 026550 59 FLFVTHPFDVGDRCVIDGVQMVVEE------MH--ILTTTFLRYDNEKIFY 101 (237)
Q Consensus 59 ~i~~~~pf~vGD~I~i~~~~G~V~~------I~--l~~T~i~~~~g~~v~I 101 (237)
-+-+.+|..+||.+.+....-.+.+ -+ ...+.+.+.+|+.|.-
T Consensus 85 ~~rF~~PV~~GD~L~~~~~v~~~~~~~s~~~~~~v~~~~~~~nq~Ge~V~~ 135 (154)
T 3exz_A 85 ELSWPNPTRPGDELHVETTVLAITPSKSRPDRAIVTCQSDTLNQRGEVVQR 135 (154)
T ss_dssp EEECSSCCCTTCEEEEEEEEEEEEECSSCTTEEEEEEEEEEECTTSCEEEE
T ss_pred EEEEcCCCCCCCEEEEEEEEEEEEecccCCCceEEEEEEEEEeCCCCEEEE
Confidence 4678999999999987553222221 12 2345555677776643
No 38
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=47.66 E-value=52 Score=21.34 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=21.7
Q ss_pred hheeeeCCCCCCcEEEEcCeeEEEEEEE
Q 026550 58 IFLFVTHPFDVGDRCVIDGVQMVVEEMH 85 (237)
Q Consensus 58 i~i~~~~pf~vGD~I~i~~~~G~V~~I~ 85 (237)
++=.+.+.=++||.+.++|..-+|.++.
T Consensus 46 i~~~lg~iP~~Gd~v~~~~~~f~V~~~~ 73 (86)
T 2pls_A 46 IMWLLGRLPQTGDITFWENWRLEVIDMD 73 (86)
T ss_dssp HHHHHTSCCCTTCEEEETTEEEEEEEEE
T ss_pred HHHHhCCCCCCCCEEEECCEEEEEEEee
Confidence 3334566668999999999888888876
No 39
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=46.89 E-value=10 Score=25.18 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=24.2
Q ss_pred hheeeeCCCCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEE
Q 026550 58 IFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKI 99 (237)
Q Consensus 58 i~i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v 99 (237)
..+-...+|.+||.|++=+-.|.-....+ +.+.+.+|+.+
T Consensus 22 ~~ie~rN~f~~GD~iEi~~P~g~~~~~~v--~~m~d~~G~~i 61 (89)
T 4he6_A 22 ATVQQRNHFRPGDEVEFFGPEIENFTQVI--EKIWDEDGNEL 61 (89)
T ss_dssp EEEEESSCBCTTCEEEEESTTSCCEEEEC--CCEEETTSCEE
T ss_pred EEEEEcCCcCCCCEEEEEcCCCCcEEEEe--HHeEcCCCCEe
Confidence 34667889999999998332332222222 34666677655
No 40
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=46.65 E-value=38 Score=23.79 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=40.9
Q ss_pred EEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEEeeeCceEEEEEEEE
Q 026550 112 SNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYIT 179 (237)
Q Consensus 112 ~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~v~~~~~~~~~v~~~v~~~ 179 (237)
.|+.+.. ..+..+-|.+..+.+.++++++++.+++...+.|++.. ..+....-..+..++.+...
T Consensus 13 ~~~~~~~-mI~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~--~~vG~~~~~~~~~d~~l~~~ 77 (120)
T 3bde_A 13 ENLYFQG-MIRHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTH--FEQLRQISPKIDYHFGFSME 77 (120)
T ss_dssp -----CC-CEEEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEE--EEEEECCCSSSCCCEEEEEE
T ss_pred hccCCCC-cEEEEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEE--EEEccCCCCCCCccEEEEEE
Confidence 5777777 77788889999998888888899888888888888742 22222111123366665554
No 41
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=46.42 E-value=27 Score=21.99 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=23.4
Q ss_pred CCCCCcEEEE---cC--eeEEEEEEEeE-EEEEEE-eCCc
Q 026550 65 PFDVGDRCVI---DG--VQMVVEEMHIL-TTTFLR-YDNE 97 (237)
Q Consensus 65 pf~vGD~I~i---~~--~~G~V~~I~l~-~T~i~~-~~g~ 97 (237)
-|++||.|.. || +.|+|++|+-. .|-+.. .||.
T Consensus 13 ~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s 52 (66)
T 2eqj_A 13 KFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSS 52 (66)
T ss_dssp CSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTE
T ss_pred cccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCC
Confidence 3999999986 66 77999999863 444433 3443
No 42
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=46.05 E-value=28 Score=22.44 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=23.5
Q ss_pred HHhhhheeeeCCCCCCcEEEEcCeeEEEEEEE
Q 026550 54 FEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMH 85 (237)
Q Consensus 54 ~~~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~ 85 (237)
++|.++=.+.+.=++||.++++|..-+|.++.
T Consensus 38 l~G~i~~~lg~iP~~Gd~v~~~~~~f~V~~~~ 69 (81)
T 3lae_A 38 FNGLILEHLEEIPDEGTICEIDGLLITILEVG 69 (81)
T ss_dssp HHHHHHHHCSSCCCTTCEEEETTEEEEEEEEE
T ss_pred HHHHHHHHhCCCCCCCCEEEECCEEEEEEEee
Confidence 33334444567679999999999888888875
No 43
>4ffu_A Oxidase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc, PS biology; HET: MSE; 1.80A {Sinorhizobium meliloti}
Probab=45.95 E-value=49 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=25.2
Q ss_pred eeeeCCCCCCcEEEEcCeeEEEEE--------EEeEEEEEEEeCCcEEEE
Q 026550 60 LFVTHPFDVGDRCVIDGVQMVVEE--------MHILTTTFLRYDNEKIFY 101 (237)
Q Consensus 60 i~~~~pf~vGD~I~i~~~~G~V~~--------I~l~~T~i~~~~g~~v~I 101 (237)
+-+.+|..+||.+.+....-.+.+ +-...+++++.+|+.+.-
T Consensus 111 ~rF~~PV~~GDtL~~~~~v~~~~~~~s~~~~g~v~~~~~~~nq~Ge~V~~ 160 (176)
T 4ffu_A 111 LRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLA 160 (176)
T ss_dssp EEECSCCCTTCEEEEEEEEEEEEECTTCTTEEEEEEEEEEECTTSCEEEE
T ss_pred EEEcCCccCCCEEEEEEEEEEEEecccCCCceEEEEEEEEEeCCCCEEEE
Confidence 568999999999987553322222 112234455667776543
No 44
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=45.55 E-value=80 Score=22.53 Aligned_cols=96 Identities=4% Similarity=0.031 Sum_probs=55.3
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEEeeeC----------------ceEEEEEEEEEeecccchH
Q 026550 125 VEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD----------------EKMIMGLYITHIIIFENYE 188 (237)
Q Consensus 125 ~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~v~~~~~~~----------------~~v~~~v~~~~~~~~~~~~ 188 (237)
+.+.+..+-+.++.+.+.+.+.+++.+.-++-.....+.+.+... ..+.+.+.+. . .
T Consensus 3 v~I~l~~Grs~e~k~~L~~~it~al~e~~~vP~~dv~vii~e~~~~~~~~~~~ylg~~rs~~~v~I~I~~~-----~--g 75 (136)
T 3mlc_A 3 IRIDLTSDRSREQRRAIADAVHDALVEVLAIPARDRFQILTAHDPSDIIAEDAGLGFQRSPSVVIIHVFTQ-----A--G 75 (136)
T ss_dssp EEEEEETTSCSHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECGGGEEECCTTSSCCCCSCCEEEEEEEE-----T--T
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEcCHHHccccccccCcCCCCCeEEEEEEEC-----C--C
Confidence 345555555667777788888888877655543445555555443 2333343332 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEeeecCCCC
Q 026550 189 EKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATS 230 (237)
Q Consensus 189 ~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~~~~~~~ 230 (237)
.-.+.|.++...+.+.++..|+. --...+.+.+.+...+
T Consensus 76 Rt~EqK~~L~~~it~~l~~lg~~---~~~v~V~i~E~~~~~W 114 (136)
T 3mlc_A 76 RTIETKQRVFAAITESLAPIGVA---GSDVFIAITENAPHDW 114 (136)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTCC---GGGEEEEEEEECGGGE
T ss_pred CCHHHHHHHHHHHHHHHHHcCCC---cccEEEEEEEcCHHHe
Confidence 12367888999999988445654 3334555555544443
No 45
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=45.55 E-value=12 Score=25.36 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=19.1
Q ss_pred eCCCCCCcEEEEc--CeeEEEEEEEe
Q 026550 63 THPFDVGDRCVID--GVQMVVEEMHI 86 (237)
Q Consensus 63 ~~pf~vGD~I~i~--~~~G~V~~I~l 86 (237)
.+.+++||+|++. +..|+|.-++-
T Consensus 10 ~~~~~vG~rV~V~~~~~~GtVryvG~ 35 (91)
T 1whk_A 10 TVKLHEGSQVLLTSSNEMATVRYVGP 35 (91)
T ss_dssp CCCCCSSCEEEESSSCCEEEECCCEE
T ss_pred CccccCCCEEEECCCCeEEEEEEeee
Confidence 4569999999995 57888877664
No 46
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=45.39 E-value=17 Score=24.66 Aligned_cols=24 Identities=21% Similarity=0.093 Sum_probs=18.9
Q ss_pred eCCCCCCcEEEEc------CeeEEEEEEEe
Q 026550 63 THPFDVGDRCVID------GVQMVVEEMHI 86 (237)
Q Consensus 63 ~~pf~vGD~I~i~------~~~G~V~~I~l 86 (237)
...++|||+|++. +..|+|.-++-
T Consensus 5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~ 34 (95)
T 1whl_A 5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGP 34 (95)
T ss_dssp CCCCCSSCEEEEECSSSSCEEEEEEEEECC
T ss_pred cccCcCCCEEEEecCCCccceeEEEEEeCc
Confidence 3569999999993 36799988774
No 47
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=45.35 E-value=9.6 Score=25.80 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=25.4
Q ss_pred hheeeeCC-CCCCcEEEEcCee----EEEEEEEeEEEEEEEeCCcEE
Q 026550 58 IFLFVTHP-FDVGDRCVIDGVQ----MVVEEMHILTTTFLRYDNEKI 99 (237)
Q Consensus 58 i~i~~~~p-f~vGD~I~i~~~~----G~V~~I~l~~T~i~~~~g~~v 99 (237)
++|..+|| |+.||.|.+.... +.-..-...+..+.+.+|..+
T Consensus 4 ~fi~tDr~iYrPGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v 50 (102)
T 2p9r_A 4 VFVQTDKSIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRI 50 (102)
T ss_dssp EEEEESCSEECTTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEE
T ss_pred EEEECCCcccCCCCEEEEEEEEECCCCcCCCCCceEEEEECCCCCEE
Confidence 57899999 9999999875421 111111122455666666544
No 48
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=44.77 E-value=19 Score=26.83 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=42.9
Q ss_pred eeeeCCCCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccC-CcEEEEEcC
Q 026550 60 LFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLAT-KPISNFYRS 117 (237)
Q Consensus 60 i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~-~~i~N~s~~ 117 (237)
.+.+=| ++||.++-|+..|.|+....-+...-=.+|+++-+ |..+.+ -...|-+..
T Consensus 62 vfVeLP-~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~Vvev-N~~L~d~PeliN~dPy 118 (155)
T 3hgb_A 62 VFVQLP-VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEV-NSDLDGTPQLVNSDPY 118 (155)
T ss_dssp EEEECC-CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE-CTHHHHCTTHHHHCTT
T ss_pred EEEEcC-CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEE-hhhhhhChHhhccCCC
Confidence 455656 99999999999999999999888777788998888 555544 445565443
No 49
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=44.26 E-value=13 Score=27.10 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=42.4
Q ss_pred eeeeCCCCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccC-CcEEEEEcC
Q 026550 60 LFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLAT-KPISNFYRS 117 (237)
Q Consensus 60 i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~-~~i~N~s~~ 117 (237)
.+.+=| ++||.++-|+..|.|+....-+...--.+|+++-+ |..+.+ -...|-...
T Consensus 52 v~VelP-~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~Vvev-N~~l~~~P~liN~dPy 108 (137)
T 3tzu_A 52 VFVQLP-EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEV-NTAAVDDPATIATDPY 108 (137)
T ss_dssp EEEECC-CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEE-CHHHHHCTHHHHHCTT
T ss_pred EEEEcC-CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEe-hhhhhcChhhhcCCCC
Confidence 455556 99999999999999999998888777788998888 554443 445565433
No 50
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=42.78 E-value=84 Score=21.98 Aligned_cols=93 Identities=10% Similarity=-0.016 Sum_probs=51.8
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEEeeeC----------------ceEEEEEEEEEeecccchHH
Q 026550 126 EFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD----------------EKMIMGLYITHIIIFENYEE 189 (237)
Q Consensus 126 ~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~v~~~~~~~----------------~~v~~~v~~~~~~~~~~~~~ 189 (237)
.+.++...+.++.+.+.+.+.+++.+..+.......+.+....+ ..+.+.+. .. -..
T Consensus 5 ~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p~~~~~v~i~~~~~~~~~~~g~~l~~~~~~~~~~I~i~-~~---grt--- 77 (131)
T 2aal_A 5 KFDLFYGRTDAQIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLEDTGLGYGRSSAVVLLTVI-SR---PRS--- 77 (131)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECTTSEEECCTTSCCCCCTTCEEEEEE-ES---CCC---
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEECHHHcccCCccCCcCCCCCeEEEEEE-eC---CCC---
Confidence 34444445556666677777777776655533333455555532 33334443 21 111
Q ss_pred HHHHHHHHHHHHHHHHHH-cCCcccccCCceEEEeeecCCC
Q 026550 190 KINRRSELVLELKRIFEE-AAIRIYHVLPQEVQVSYVVSAT 229 (237)
Q Consensus 190 ~~~~~~~l~~~i~~~l~~-~gI~~~~~p~~~v~~~~~~~~~ 229 (237)
.+.|.++..++.+.+.+ .|+. -....+.+.+.++..
T Consensus 78 -~eqK~~l~~~l~~~l~~~lg~~---~~~v~I~i~e~~~~~ 114 (131)
T 2aal_A 78 -EEQKVCFYKLLTGALERDCGIS---PDDVIVALVENSDAD 114 (131)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCC---GGGEEEEEEECCGGG
T ss_pred -HHHHHHHHHHHHHHHHHHhCcC---cccEEEEEEEcCHHH
Confidence 25578889999998866 6865 334455555554433
No 51
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=42.47 E-value=31 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.5
Q ss_pred eCCCCCCcEEEEc--C---eeEEEEEEEe
Q 026550 63 THPFDVGDRCVID--G---VQMVVEEMHI 86 (237)
Q Consensus 63 ~~pf~vGD~I~i~--~---~~G~V~~I~l 86 (237)
.+.++|||+|++. | ..|+|.-++-
T Consensus 30 ~~~~~VG~RV~V~~~g~~~~~GtVryvG~ 58 (113)
T 1whg_A 30 ASAISVGSRCEVRAPDHSLRRGTVMYVGL 58 (113)
T ss_dssp HTTSCSSCEEEECCSSSSCEEEEEEEEEE
T ss_pred hhcCCCCCEEEEecCCCcceEEEEEEecc
Confidence 3568999999994 3 7899998884
No 52
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.44 E-value=22 Score=25.34 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=17.2
Q ss_pred CCCCCcEEEE-----cCeeEEEEEEE
Q 026550 65 PFDVGDRCVI-----DGVQMVVEEMH 85 (237)
Q Consensus 65 pf~vGD~I~i-----~~~~G~V~~I~ 85 (237)
+++.||.|+| -|..|+|.++.
T Consensus 45 ~IkkGD~V~Vi~GkdKGk~GkV~~V~ 70 (121)
T 3j21_U 45 PVRVGDKVRIMRGDYKGHEGKVVEVD 70 (121)
T ss_dssp ECCSSSEEEECSSSCSSEEEEEEEEE
T ss_pred ccccCCEEEEeecCCCCcEeEEEEEE
Confidence 6899999998 24779998875
No 53
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=41.93 E-value=27 Score=25.34 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=28.2
Q ss_pred eCCCCCCcEEEEcCeeEEEEEEEe----------EEEEEEE-eCCcEE
Q 026550 63 THPFDVGDRCVIDGVQMVVEEMHI----------LTTTFLR-YDNEKI 99 (237)
Q Consensus 63 ~~pf~vGD~I~i~~~~G~V~~I~l----------~~T~i~~-~~g~~v 99 (237)
...||.|+.|+++|..+.|.++.. -.+++++ .+|..+
T Consensus 13 ~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~ 60 (136)
T 2eif_A 13 VGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKK 60 (136)
T ss_dssp GGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEE
T ss_pred HHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeE
Confidence 467999999999999999999874 1356666 445544
No 54
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=40.98 E-value=27 Score=26.54 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.8
Q ss_pred eCCCCCCcEEEEcCeeEEEEEEEeE
Q 026550 63 THPFDVGDRCVIDGVQMVVEEMHIL 87 (237)
Q Consensus 63 ~~pf~vGD~I~i~~~~G~V~~I~l~ 87 (237)
-+.+|.|++|.++|..++|.+|+.-
T Consensus 37 ~~~LrkG~yv~IkGrPCKIveiStS 61 (176)
T 1khi_A 37 CHHIRLGDILILQGRPCQVIRISTS 61 (176)
T ss_dssp GGGCCTTCEEEETTEEEEEEEEEEC
T ss_pred hhheeeCCEEEECCeeeEEEEEEcc
Confidence 4558999999999999999999754
No 55
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=40.34 E-value=11 Score=25.79 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=17.7
Q ss_pred eCCCCCCcEEEEcC-eeEEEEEEEe
Q 026550 63 THPFDVGDRCVIDG-VQMVVEEMHI 86 (237)
Q Consensus 63 ~~pf~vGD~I~i~~-~~G~V~~I~l 86 (237)
.+.+++||+|++.| ..|+|.-++-
T Consensus 8 ~~~~~vG~rV~V~g~~~GtVryvG~ 32 (96)
T 2z0w_A 8 EGELRLGERVLVVGQRLGTIRFFGT 32 (96)
T ss_dssp ---CCTTCCCCCCCCCCEEEEEEEC
T ss_pred cccCCCCCEEEECCCcEEEEEEecc
Confidence 34599999999966 5799888874
No 56
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=39.19 E-value=25 Score=25.03 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=17.6
Q ss_pred CCCCCcEEEE-----cCeeEEEEEEE
Q 026550 65 PFDVGDRCVI-----DGVQMVVEEMH 85 (237)
Q Consensus 65 pf~vGD~I~i-----~~~~G~V~~I~ 85 (237)
+++.||.|+| -|..|+|.++.
T Consensus 42 ~IkkGD~V~Vi~G~dKGk~GkV~~V~ 67 (120)
T 1vq8_T 42 RVNAGDTVEVLRGDFAGEEGEVINVD 67 (120)
T ss_dssp ECCTTCEEEECSSTTTTCEEEEEEEE
T ss_pred cccCCCEEEEEecCCCCCEEEEEEEE
Confidence 6999999998 25789998875
No 57
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=38.17 E-value=86 Score=22.17 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccCCcEE
Q 026550 64 HPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPIS 112 (237)
Q Consensus 64 ~pf~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~ 112 (237)
..+++||. +.|+|..|.=.-.-+.-.+|..-.+|.+.+....+.
T Consensus 3 ~~~~vG~i-----v~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~ 46 (130)
T 2k4k_A 3 AKFEVGSV-----YTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVK 46 (130)
T ss_dssp CCCCTTCE-----EEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCS
T ss_pred CcCCCCCE-----EEEEEEEEeCCeEEEEECCCcEEEEEHHHCCccccc
Confidence 45677775 467888876555555555777788999998766543
No 58
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=37.78 E-value=43 Score=23.12 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.6
Q ss_pred hheeeeCCCCCCcEEEEcC
Q 026550 58 IFLFVTHPFDVGDRCVIDG 76 (237)
Q Consensus 58 i~i~~~~pf~vGD~I~i~~ 76 (237)
.-+-+.+|..+||.+.+..
T Consensus 80 ~~~rf~~Pv~~Gd~l~~~~ 98 (134)
T 1iq6_A 80 QSLSFKLPVFVGDEVTAEV 98 (134)
T ss_dssp EEEEECSCCBTTCEEEEEE
T ss_pred EEEEEcCCCCCCCEEEEEE
Confidence 4467889999999998754
No 59
>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=36.99 E-value=67 Score=21.13 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=22.4
Q ss_pred hhhheeeeCCCCCCcEEEEcCeeEEEEEEE
Q 026550 56 AIIFLFVTHPFDVGDRCVIDGVQMVVEEMH 85 (237)
Q Consensus 56 ~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~ 85 (237)
|.++=.+.+.=++||.+.++|..-+|.++.
T Consensus 50 G~i~~~lg~iP~~Gd~v~~~~~~f~V~~~~ 79 (92)
T 2o3g_A 50 GLIMEELQTIPDVGDFADFHGWRFEVVEKE 79 (92)
T ss_dssp HHHHHHHTSCCCTTCEEEETTEEEEEEEEE
T ss_pred HHHHHHhCCCCCCCCEEEECCEEEEEEEee
Confidence 333334566668999999999888888876
No 60
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=36.62 E-value=75 Score=20.56 Aligned_cols=30 Identities=7% Similarity=0.105 Sum_probs=22.7
Q ss_pred hhhheeeeCCCCCCcEEEEcCeeEEEEEEE
Q 026550 56 AIIFLFVTHPFDVGDRCVIDGVQMVVEEMH 85 (237)
Q Consensus 56 ~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~ 85 (237)
|.++=.+.+.=++||.++++|..-+|.++.
T Consensus 42 G~i~~~lg~iP~~Gd~v~~~~~~f~V~~~~ 71 (86)
T 2p4p_A 42 GFMMYMLRXIPXXTDFVLYDXYXFEIIDTE 71 (86)
T ss_dssp HHHHHHHCSCCCTTCEEEETTEEEEEEEEE
T ss_pred HHHHHHhCCCCCCCcEEEEeeEEEEEEEcc
Confidence 333334567668999999999888888876
No 61
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=36.54 E-value=36 Score=24.58 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=29.9
Q ss_pred eCCCCCCcEEEEcCeeEEEEEEEeE----------EEEEEE-eCCcEE--EEecc
Q 026550 63 THPFDVGDRCVIDGVQMVVEEMHIL----------TTTFLR-YDNEKI--FYPNS 104 (237)
Q Consensus 63 ~~pf~vGD~I~i~~~~G~V~~I~l~----------~T~i~~-~~g~~v--~IPNs 104 (237)
..-||.|..|+++|..+.|.++... .+++++ .+|..+ +.|-+
T Consensus 11 ~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~ 65 (136)
T 1bkb_A 11 AGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVD 65 (136)
T ss_dssp GGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETT
T ss_pred HHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCC
Confidence 4669999999999999999999432 455665 445544 44433
No 62
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=36.45 E-value=37 Score=21.96 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=22.5
Q ss_pred hhhheeeeCCCCCCcEEEEcCeeEEEEEEEe
Q 026550 56 AIIFLFVTHPFDVGDRCVIDGVQMVVEEMHI 86 (237)
Q Consensus 56 ~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~l 86 (237)
|.++=.+.+.=++||.++++|..-+|.++.=
T Consensus 40 G~i~~~lg~iP~~Gd~v~~~~~~f~V~~~~~ 70 (83)
T 3llb_A 40 GLVMSAFGHLPKRNEVVELGEFRFRVLNADS 70 (83)
T ss_dssp HHHHHHHSSCCCTTCEEEETTEEEEEEEECS
T ss_pred HHHHHHhCcCCCCCCEEEECCEEEEEEEeeC
Confidence 3333344666699999999998888887753
No 63
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=35.58 E-value=75 Score=21.00 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=23.5
Q ss_pred HHhhhheeeeCCCCCCcEEEEcCeeEEEEEEE
Q 026550 54 FEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMH 85 (237)
Q Consensus 54 ~~~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~ 85 (237)
++|.++=.+.+-=++||.|.++|..-+|.++.
T Consensus 50 lgG~i~~~lg~iP~~Gd~v~~~~~~f~V~~~d 81 (94)
T 2oai_A 50 LAGMCISYFGRIPHVGEYFDWAGWRIEIVDLD 81 (94)
T ss_dssp HHHHHHHHHSSCCCTTCEEEETTEEEEEEEEE
T ss_pred HHHHHHHHhCCCCCCCCEEEECCEEEEEEEEc
Confidence 43333334566668999999999888888876
No 64
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=35.34 E-value=38 Score=24.27 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=10.5
Q ss_pred CCCCCCcEEEEcC
Q 026550 64 HPFDVGDRCVIDG 76 (237)
Q Consensus 64 ~pf~vGD~I~i~~ 76 (237)
-.|++||+|.+-+
T Consensus 35 prF~vGDrVrvr~ 47 (126)
T 2zzd_A 35 SKFNVGDRVRIKD 47 (126)
T ss_dssp CSSCTTCEEEECC
T ss_pred CccCCCCEEEEcc
Confidence 3599999999844
No 65
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=35.18 E-value=35 Score=29.02 Aligned_cols=41 Identities=29% Similarity=0.251 Sum_probs=27.5
Q ss_pred CCCCcEEEEcC---ee------EEEEEEEeEEEEEEEeC---CcEEEEecccc
Q 026550 66 FDVGDRCVIDG---VQ------MVVEEMHILTTTFLRYD---NEKIFYPNSVL 106 (237)
Q Consensus 66 f~vGD~I~i~~---~~------G~V~~I~l~~T~i~~~~---g~~v~IPNs~l 106 (237)
.-|||||.+.. .. |.|++|-=|.+.+...+ .....+.|...
T Consensus 81 ~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R~~~l~R~~~~~~~~~i~anvD~ 133 (358)
T 2rcn_A 81 LVTGDRVVWRPGKAAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIAANIDQ 133 (358)
T ss_dssp CCBTCEEEEECBC-------CCEEEEEECCCSCEEEEC-----CEEEEECCCE
T ss_pred CCCCcEEEEEeCCCccccccccceEeEEeCCcCcccCcchhhHHHHHHhcCCE
Confidence 55999999932 22 89999999999988754 23344555443
No 66
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=34.94 E-value=31 Score=25.41 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=17.7
Q ss_pred CCCCCcEEEE-----cCee-EEEEEEE
Q 026550 65 PFDVGDRCVI-----DGVQ-MVVEEMH 85 (237)
Q Consensus 65 pf~vGD~I~i-----~~~~-G~V~~I~ 85 (237)
+++.||.|+| -|.. |+|..+.
T Consensus 48 ~IkkGD~V~Vi~GkdKGk~~GkV~~V~ 74 (145)
T 2zkr_t 48 PIRKDDEVQVVRGHYKGQQIGKVVQVY 74 (145)
T ss_dssp BCCTTCEEEECSSTTTTCCSEEEEEEE
T ss_pred ccCCCCEEEEeecCCCCcceeEEEEEE
Confidence 7999999998 2477 9999875
No 67
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=34.94 E-value=32 Score=24.24 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=17.6
Q ss_pred CCCCCcEEEE-----cCeeEEEEEEE
Q 026550 65 PFDVGDRCVI-----DGVQMVVEEMH 85 (237)
Q Consensus 65 pf~vGD~I~i-----~~~~G~V~~I~ 85 (237)
+++.||.|++ -|..|+|.++.
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~ 40 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLAL 40 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEE
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEE
Confidence 7999999998 25789999875
No 68
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=34.82 E-value=39 Score=23.59 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.0
Q ss_pred CCCCCcEEEE-----cCeeEEEEEEEe
Q 026550 65 PFDVGDRCVI-----DGVQMVVEEMHI 86 (237)
Q Consensus 65 pf~vGD~I~i-----~~~~G~V~~I~l 86 (237)
+++.||.|++ -|..|+|.++.-
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~ 32 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLP 32 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEG
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEEC
Confidence 6899999998 247799998754
No 69
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=34.28 E-value=32 Score=24.67 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccCCcEEE
Q 026550 66 FDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISN 113 (237)
Q Consensus 66 f~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N 113 (237)
-++||.|+-|+..|.|+.....+-..--.+|+++-+--.-.-+-...|
T Consensus 45 p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn 92 (128)
T 3a7l_A 45 PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVN 92 (128)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHH
T ss_pred cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhc
Confidence 489999999999999999998887777788998888433334445566
No 70
>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB; macrolide-specific pump, ABC-type transporter; 2.00A {Actinobacillus actinomycetemcomitans}
Probab=34.08 E-value=54 Score=24.96 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=41.6
Q ss_pred CCCcEEEEcCeeEEEEEEEeE-EEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHH
Q 026550 67 DVGDRCVIDGVQMVVEEMHIL-TTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTI 145 (237)
Q Consensus 67 ~vGD~I~i~~~~G~V~~I~l~-~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i 145 (237)
.+|+.|.+++...+|.-+-=- .+.+...+...+++|-+.+... . +.. + ....+.+.+....+.+. +.+.+
T Consensus 123 ~iG~~i~i~~~~~~VvGV~~~~~~~~~~~~~~~v~ip~~~~~~~-~--~~~-~--~~~~i~v~~~~~~~~~~---~~~~i 193 (226)
T 3ftj_A 123 PLGKTVIFNKRPFRVIGVVSDQQLGGFPGNSLNLYSPYSTVLNK-I--TGG-S--RIGSITVKISDDVNSTV---AEKSL 193 (226)
T ss_dssp CTTCEEEETTEEEEEEEEECCC--------CCEEEEEHHHHHHH-T--TCS-S--BCSEEEEEECTTSCHHH---HHHHH
T ss_pred CCCCEEEECCccEEEEEEECCCCCCCCCCCCCeEEEEhHHHHHH-h--cCC-C--cccEEEEEEcCCCCHHH---HHHHH
Confidence 599999998855444432100 0112222355789998765310 0 111 1 12357788888778666 77777
Q ss_pred HHHHhhC
Q 026550 146 KNYLESK 152 (237)
Q Consensus 146 ~~~l~~~ 152 (237)
++.+++.
T Consensus 194 ~~~l~~~ 200 (226)
T 3ftj_A 194 TELLKSL 200 (226)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776643
No 71
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=33.80 E-value=27 Score=23.09 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=12.0
Q ss_pred eeCCCCCCcEEEEc
Q 026550 62 VTHPFDVGDRCVID 75 (237)
Q Consensus 62 ~~~pf~vGD~I~i~ 75 (237)
..||+..||.|.++
T Consensus 38 ~grPV~~GD~I~i~ 51 (83)
T 2jv2_A 38 QGKTVRTGDVIGIS 51 (83)
T ss_dssp TTSEECTTCEEEEE
T ss_pred CCCCccCCCEEEEe
Confidence 35999999999983
No 72
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=33.42 E-value=39 Score=23.57 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=12.9
Q ss_pred CCCCcEEEEcC--eeEEEEEE
Q 026550 66 FDVGDRCVIDG--VQMVVEEM 84 (237)
Q Consensus 66 f~vGD~I~i~~--~~G~V~~I 84 (237)
+++||+|.++| ...+|+++
T Consensus 34 ikvGD~I~f~~~~l~~~V~~v 54 (109)
T 2z0t_A 34 IKPGDIIIFEGGKLKVKVKGI 54 (109)
T ss_dssp CCTTCEEEEGGGTEEEEEEEE
T ss_pred CCCCCEEEECCCEEEEEEEEE
Confidence 48999999965 33444443
No 73
>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4
Probab=33.34 E-value=50 Score=22.94 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=24.0
Q ss_pred HHhhhheeeeCCCCCCcEEEEcCeeEEEEEEEe
Q 026550 54 FEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHI 86 (237)
Q Consensus 54 ~~~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~l 86 (237)
++|.++=.+.+.=++||.|.++|..-+|.++.=
T Consensus 69 lgGlil~~lg~iP~~Gd~v~~~g~~f~V~~~d~ 101 (113)
T 3ded_A 69 LAGVMLYQLGRVPSVTDRFEWNGFSFEVVDMDR 101 (113)
T ss_dssp HHHHHHHHHCSSCCTTCEEEETTEEEEEEEEET
T ss_pred HHHHHHHHhCCCCCCCCEEEECCEEEEEEEEeC
Confidence 434344445777799999999998888887753
No 74
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=33.28 E-value=1.1e+02 Score=22.54 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=15.3
Q ss_pred CCCCcEEEEcC---eeEEEEEEE
Q 026550 66 FDVGDRCVIDG---VQMVVEEMH 85 (237)
Q Consensus 66 f~vGD~I~i~~---~~G~V~~I~ 85 (237)
+|+||-|++++ ....|...+
T Consensus 64 LRiGD~VKVd~vpK~~hiVvGf~ 86 (153)
T 2fhd_A 64 LKKGDVVQSTRLGKIKHTVVKTF 86 (153)
T ss_dssp CCTTCEEEETTSTTCCEEEEEEE
T ss_pred eecCCEEEECCCCCccEEEEEec
Confidence 79999999986 446666555
No 75
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=32.43 E-value=46 Score=24.09 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.1
Q ss_pred eeCCCCCCcEEEEcCeeEEEEEEEeE
Q 026550 62 VTHPFDVGDRCVIDGVQMVVEEMHIL 87 (237)
Q Consensus 62 ~~~pf~vGD~I~i~~~~G~V~~I~l~ 87 (237)
-..-||.|..|.++|..+.|.|+...
T Consensus 8 ~~~~lrkG~~i~~~g~p~~Vve~~~~ 33 (138)
T 3cpf_A 8 QCSALRKNGFVVLKGRPCKIVEMSTS 33 (138)
T ss_dssp EGGGCCTTSEEEETTEEEEEEEEEEE
T ss_pred EHHHCcCCCEEEECCEEEEEEEEEec
Confidence 34679999999999999999998543
No 76
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=32.24 E-value=47 Score=24.07 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=30.7
Q ss_pred eCCCCCCcEEEEcCeeEEEEEEEe----------EEEEEEE-eCCcEE--EEecc
Q 026550 63 THPFDVGDRCVIDGVQMVVEEMHI----------LTTTFLR-YDNEKI--FYPNS 104 (237)
Q Consensus 63 ~~pf~vGD~I~i~~~~G~V~~I~l----------~~T~i~~-~~g~~v--~IPNs 104 (237)
..-||.|..|+++|..+.|.++.. -.+++++ .+|..+ +.|-+
T Consensus 9 a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~ 63 (138)
T 1iz6_A 9 VSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTS 63 (138)
T ss_dssp GGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETT
T ss_pred HHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCC
Confidence 456999999999999999999963 3456666 445554 45544
No 77
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=31.93 E-value=38 Score=24.32 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=18.0
Q ss_pred CCCCCcEEEE-----cCeeEEEEEEEe
Q 026550 65 PFDVGDRCVI-----DGVQMVVEEMHI 86 (237)
Q Consensus 65 pf~vGD~I~i-----~~~~G~V~~I~l 86 (237)
|++.||.|+| -|..|+|..+--
T Consensus 49 ~IkkgD~V~Vi~GkdKGk~GkV~~V~~ 75 (127)
T 3u5e_Y 49 PIRRDDEVLVVRGSKKGQEGKISSVYR 75 (127)
T ss_dssp ECCTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred cccCCCEEEEeecCCCCccceEEEEEC
Confidence 7899999998 247799998754
No 78
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=31.39 E-value=37 Score=24.62 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccCCcEEE
Q 026550 66 FDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISN 113 (237)
Q Consensus 66 f~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N 113 (237)
-++||.|+-|+..|.|+.+...+...--.+|+++-+-....-+-...|
T Consensus 53 p~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn 100 (136)
T 1zko_A 53 PEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELIN 100 (136)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHH
T ss_pred cCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcc
Confidence 499999999999999999998777777788888888444444455556
No 79
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=31.30 E-value=48 Score=24.96 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=22.4
Q ss_pred eeCCCCCCcEEEEcCeeEEEEEEEeE
Q 026550 62 VTHPFDVGDRCVIDGVQMVVEEMHIL 87 (237)
Q Consensus 62 ~~~pf~vGD~I~i~~~~G~V~~I~l~ 87 (237)
-..-+|.|..|.++|..++|.++...
T Consensus 32 ~a~dlrkG~~I~idG~p~~Vve~~~~ 57 (167)
T 3er0_A 32 QCSALRKNGFVVIKSRPCKIVDMSTS 57 (167)
T ss_dssp ETTTCCTTCEEEETTEEEEEEEEEEE
T ss_pred EHHHccCCCEEEECCEEEEEEEEEEe
Confidence 35669999999999999999998664
No 80
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=30.94 E-value=76 Score=20.82 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=22.1
Q ss_pred hhhheeeeCCCCCCcEEEEcCeeEEEEEEE
Q 026550 56 AIIFLFVTHPFDVGDRCVIDGVQMVVEEMH 85 (237)
Q Consensus 56 ~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~ 85 (237)
|.++=.+.+.=++||.+.++|..-+|.++.
T Consensus 49 G~i~~~lg~iP~~Ge~v~~~~~~f~V~~~d 78 (91)
T 2pli_A 49 GLVIQELGHLPVRGEKVLIGGLQFTVARAD 78 (91)
T ss_dssp HHHHHHHSSCCCTTCEEEETTEEEEEEEEC
T ss_pred HHHHHHhCCCCCCCCEEEECCEEEEEEEEe
Confidence 333334566668999999999888888765
No 81
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=30.65 E-value=69 Score=21.57 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=17.0
Q ss_pred CCCCCCcEEEEc--C--eeEEEEEEEe
Q 026550 64 HPFDVGDRCVID--G--VQMVVEEMHI 86 (237)
Q Consensus 64 ~pf~vGD~I~i~--~--~~G~V~~I~l 86 (237)
+++.+||++++. + ..|+|.=++.
T Consensus 8 ~~i~VG~Rc~V~~~~~~rrGtVrfvG~ 34 (92)
T 1whm_A 8 PPLEINSRVSLKVGETIESGTVIFCDV 34 (92)
T ss_dssp CSSCTTCEEEEEETTEEEEEEEEEEEC
T ss_pred cCccccCeEEEcCCCceeeEEEEEEec
Confidence 468999999993 3 4588877664
No 82
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=30.59 E-value=1.4e+02 Score=20.99 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=26.1
Q ss_pred eCCCCCCcEEEE---cC--eeEEEEEEEeEEEEEEEeCC
Q 026550 63 THPFDVGDRCVI---DG--VQMVVEEMHILTTTFLRYDN 96 (237)
Q Consensus 63 ~~pf~vGD~I~i---~~--~~G~V~~I~l~~T~i~~~~g 96 (237)
-+++.+||+|.. +| ..|+|.++.--.....+++.
T Consensus 3 ~~~v~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~D 41 (118)
T 2qqr_A 3 MQSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDD 41 (118)
T ss_dssp SSCCCTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEETT
T ss_pred cceeccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcCC
Confidence 368999999987 33 67999998877776666554
No 83
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Probab=30.33 E-value=53 Score=21.68 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=22.9
Q ss_pred HHhhhheeeeCCCCCCcEEEEcCeeEEEEEEE
Q 026550 54 FEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMH 85 (237)
Q Consensus 54 ~~~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~ 85 (237)
++|.++=.+.+.=++||.|.++|..-+|.++.
T Consensus 49 lgG~i~~~lg~iP~~Gd~v~~~~~~f~V~~~d 80 (93)
T 2nqw_A 49 LSGLFLEIKQELPHVGDTAVYEPFRFQVTQMD 80 (93)
T ss_dssp HHHHHHHHHCSCCCTTCEEEETTEEEEEEEEC
T ss_pred HHHHHHHHhCcCCCCCCEEEECCEEEEEEEee
Confidence 43333334566668999999999888888765
No 84
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=29.65 E-value=1.1e+02 Score=19.36 Aligned_cols=41 Identities=7% Similarity=0.015 Sum_probs=27.3
Q ss_pred CCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccCCcE
Q 026550 66 FDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPI 111 (237)
Q Consensus 66 f~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~~~i 111 (237)
+++||. +.|+|.++.=.-.-+.-.+|..-.+|.+.+....+
T Consensus 3 ~~~G~i-----v~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~ 43 (80)
T 2k52_A 3 VEPGKF-----YKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL 43 (80)
T ss_dssp CCTTCE-----EEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG
T ss_pred CCCCCE-----EEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc
Confidence 566766 56777777655544444557777889998876443
No 85
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=28.84 E-value=46 Score=24.16 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCCCCcEEEE-----cCeeEEEEEEEe
Q 026550 65 PFDVGDRCVI-----DGVQMVVEEMHI 86 (237)
Q Consensus 65 pf~vGD~I~i-----~~~~G~V~~I~l 86 (237)
|++.||.|+| -|..|+|..+--
T Consensus 48 ~IkkgD~V~Vi~GkdKGk~GkV~~V~~ 74 (135)
T 4a17_S 48 PVRKDDEVLIVRGKFKGNKGKVTQVYR 74 (135)
T ss_dssp ECCTTCEEEECSSTTTTCEEEEEEEET
T ss_pred cccCCCEEEEeecCCCCceeeEEEEEc
Confidence 6899999998 247799998754
No 86
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=28.23 E-value=59 Score=24.48 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=22.7
Q ss_pred eeeCCCCCCcEEEEcCeeEEEEEEEeE
Q 026550 61 FVTHPFDVGDRCVIDGVQMVVEEMHIL 87 (237)
Q Consensus 61 ~~~~pf~vGD~I~i~~~~G~V~~I~l~ 87 (237)
+-..-+|.|..|.++|..++|.++...
T Consensus 29 i~~~dlrkG~~I~idG~P~~Vve~~~~ 55 (167)
T 3hks_A 29 QSAGNIRKGGHIVIKNRPCKVVEVSTS 55 (167)
T ss_dssp EEGGGCCTTSEEEETTEEEEEEEEEEE
T ss_pred EEHHHccCCCEEEECCEEEEEEEEEEe
Confidence 345669999999999999999998653
No 87
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=28.23 E-value=63 Score=22.16 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=18.1
Q ss_pred CCCCCCcEEEE-----cCeeEEEEEEEe
Q 026550 64 HPFDVGDRCVI-----DGVQMVVEEMHI 86 (237)
Q Consensus 64 ~pf~vGD~I~i-----~~~~G~V~~I~l 86 (237)
..++.||.|++ -|..|+|.++--
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~ 29 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLS 29 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCEEEEEEEET
T ss_pred CCccCCCEEEEeEcCCCCeeeEEEEEEe
Confidence 36899999998 247799998754
No 88
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=28.19 E-value=58 Score=24.68 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=23.4
Q ss_pred heeeeCCCCCCcEEEEcCeeEEEEEEEe
Q 026550 59 FLFVTHPFDVGDRCVIDGVQMVVEEMHI 86 (237)
Q Consensus 59 ~i~~~~pf~vGD~I~i~~~~G~V~~I~l 86 (237)
+-+-..-||.|..|.++|..++|.++..
T Consensus 29 ~~i~a~dlrkG~~I~idG~p~~Vve~~~ 56 (174)
T 1x6o_A 29 YPLAAGALKKGGYVCINGRPCKVIDLSV 56 (174)
T ss_dssp EEEEGGGCCTTCEEEETTEEEEEEEEEE
T ss_pred EEEEHHHccCCCEEEECCEEEEEEEEEe
Confidence 3345677999999999999999999953
No 89
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=27.71 E-value=48 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=18.0
Q ss_pred CCCCCcEEEE-----cCeeEEEEEEEe
Q 026550 65 PFDVGDRCVI-----DGVQMVVEEMHI 86 (237)
Q Consensus 65 pf~vGD~I~i-----~~~~G~V~~I~l 86 (237)
|++.||.|.| -|..|+|..+.-
T Consensus 48 ~IkKGD~V~Vi~GkdKGk~GkVl~V~~ 74 (150)
T 3iz5_Y 48 PIRKDDEVQVVRGSYKGREGKVVQVYR 74 (150)
T ss_dssp ECCSSSEEEECSSTTTTCEEEEEEEET
T ss_pred ccCCCCEEEEeecCCCCccceEEEEEc
Confidence 7899999998 247799998754
No 90
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=27.70 E-value=1.1e+02 Score=20.77 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=23.3
Q ss_pred eCCCCCCcEEEEcC---------------eeEEEEEEEeEEEEEEE
Q 026550 63 THPFDVGDRCVIDG---------------VQMVVEEMHILTTTFLR 93 (237)
Q Consensus 63 ~~pf~vGD~I~i~~---------------~~G~V~~I~l~~T~i~~ 93 (237)
-+.|++||.|.|.+ -.|+|..++=+..-+.-
T Consensus 31 m~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~V 76 (96)
T 1vq8_Q 31 VEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDI 76 (96)
T ss_dssp HCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEE
T ss_pred HHHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEE
Confidence 36799999999843 45999988777666554
No 91
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=27.37 E-value=66 Score=22.51 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=9.8
Q ss_pred CCCCcEEEEcC
Q 026550 66 FDVGDRCVIDG 76 (237)
Q Consensus 66 f~vGD~I~i~~ 76 (237)
+++||+|.+++
T Consensus 35 i~vGD~I~f~~ 45 (113)
T 1xne_A 35 IKRGDKIIFND 45 (113)
T ss_dssp CCTTCEEEETT
T ss_pred cCCCCEEEEcc
Confidence 58999999977
No 92
>3ir3_A HTD2, 3-hydroxyacyl-thioester dehydratase 2; structural GENO structural genomics consortium, SGC, lyase; 1.99A {Homo sapiens}
Probab=27.26 E-value=1.1e+02 Score=21.93 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=15.5
Q ss_pred hheeeeCCCCCCcEEEEcC
Q 026550 58 IFLFVTHPFDVGDRCVIDG 76 (237)
Q Consensus 58 i~i~~~~pf~vGD~I~i~~ 76 (237)
.-+-+.+|..+||.+.+..
T Consensus 90 ~~~rf~~PV~~Gd~l~~~~ 108 (148)
T 3ir3_A 90 QEISFPAPLYIGEVVLASA 108 (148)
T ss_dssp EEEECCSCCBTTCEEEEEE
T ss_pred EEEEECCCcCCCCEEEEEE
Confidence 3467899999999998754
No 93
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=27.24 E-value=1.4e+02 Score=19.91 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCcEEEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCc
Q 026550 136 EKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIR 211 (237)
Q Consensus 136 ~~i~~~~~~i~~~l~~~~~~~~~~~~v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~ 211 (237)
+-++.+++.+++..+......++...+.+.=++.=.+.+++.. .|+....+.-++....+.+..+++|-+
T Consensus 18 dGIe~IK~AL~~a~~~~~~~~~~~~~vkI~~vgaP~Y~i~~~~------~D~k~ge~~L~~ai~~i~~~i~~~gG~ 87 (93)
T 2qn6_B 18 LGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYRVDVVG------TNPKEASEALNQIISNLIKIGKEENVD 87 (93)
T ss_dssp TTHHHHHHHHHHHHTTHHHHCTTEEEEEEEESSTTEEEEEEEE------SCHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred chHHHHHHHHHHHHhhcccccCccceEEEEEEcCCeEEEEEEe------cCHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 3455587777765331111111222366666666544444444 688888899999999999999999876
No 94
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=27.01 E-value=60 Score=25.50 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=33.5
Q ss_pred hhhheeeeCCCCCCcEEEEcCeeEEEEEEEeE---------EEEEEE-eCCcE--EEEeccc
Q 026550 56 AIIFLFVTHPFDVGDRCVIDGVQMVVEEMHIL---------TTTFLR-YDNEK--IFYPNSV 105 (237)
Q Consensus 56 ~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~l~---------~T~i~~-~~g~~--v~IPNs~ 105 (237)
.|+| .-..-||.|..|+++|..+.|.|+... .+++++ .+|.. -+.|-+.
T Consensus 28 rg~M-i~a~dlKkG~~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s~e 88 (215)
T 1yby_A 28 AGLM-ISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTD 88 (215)
T ss_dssp ---C-EEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTC
T ss_pred CCEE-EEhhhccCCCEEEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEECCCC
Confidence 5666 557789999999999999999999743 466776 44554 2444433
No 95
>2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in europe, spine, structural genomics; 1.8A {Mycobacterium tuberculosis} SCOP: d.38.1.4
Probab=26.41 E-value=75 Score=22.54 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.3
Q ss_pred eeeeCCCCCCcEEEEcCe
Q 026550 60 LFVTHPFDVGDRCVIDGV 77 (237)
Q Consensus 60 i~~~~pf~vGD~I~i~~~ 77 (237)
+-+.+|..+||.+.+...
T Consensus 94 ~rF~~PV~~Gd~l~~~~~ 111 (151)
T 2c2i_A 94 VRFPAPVPVGSRVRATSS 111 (151)
T ss_dssp EECCSCCBTTCEEEEEEE
T ss_pred EEECCCcCCCCEEEEEEE
Confidence 678999999999988653
No 96
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=26.21 E-value=1.2e+02 Score=18.65 Aligned_cols=47 Identities=4% Similarity=-0.018 Sum_probs=32.1
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEEeeeCce
Q 026550 125 VEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEK 171 (237)
Q Consensus 125 ~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~v~~~~~~~~~ 171 (237)
+.+.+...-+.++-+++.+.+.+.+.+..++......+.+.+...+.
T Consensus 4 I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~ 50 (72)
T 3mb2_A 4 LRITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTH 50 (72)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGG
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHH
Confidence 44555555677777778888888888776665445677777876543
No 97
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.94 E-value=1.2e+02 Score=20.53 Aligned_cols=30 Identities=20% Similarity=0.022 Sum_probs=22.4
Q ss_pred eCCCCCCcEEEEcC---------------eeEEEEEEEeEEEEEE
Q 026550 63 THPFDVGDRCVIDG---------------VQMVVEEMHILTTTFL 92 (237)
Q Consensus 63 ~~pf~vGD~I~i~~---------------~~G~V~~I~l~~T~i~ 92 (237)
-+.|++||.|.|.+ -.|+|..++=+..-+.
T Consensus 32 m~~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~ 76 (97)
T 3j21_R 32 LQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVE 76 (97)
T ss_dssp HCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEE
T ss_pred HHHhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEE
Confidence 46789999999843 4599998887765543
No 98
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=25.34 E-value=1e+02 Score=17.77 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=29.9
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEEeeeC
Q 026550 125 VEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD 169 (237)
Q Consensus 125 ~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~v~~~~~~~ 169 (237)
+.+.+....+.++-+++.+.+.+++.+.-+.......+.+.+...
T Consensus 6 i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~ 50 (63)
T 2x4k_A 6 VNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKP 50 (63)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECG
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCH
Confidence 445555555667667788888888877656544456777777764
No 99
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=25.03 E-value=1.1e+02 Score=17.80 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=31.5
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEEeeeCce
Q 026550 125 VEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEK 171 (237)
Q Consensus 125 ~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~v~~~~~~~~~ 171 (237)
+++.+....+.++-+++-+.+.+.+.+.-++......+.+.+.....
T Consensus 3 i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~ 49 (62)
T 1otf_A 3 AQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNH 49 (62)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGG
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHH
Confidence 34455455567777778888888888776664445677788877543
No 100
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=24.52 E-value=30 Score=28.69 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=21.9
Q ss_pred CCCcEEEEc---CeeEEEEEEEeEEEEEEE
Q 026550 67 DVGDRCVID---GVQMVVEEMHILTTTFLR 93 (237)
Q Consensus 67 ~vGD~I~i~---~~~G~V~~I~l~~T~i~~ 93 (237)
-|||||.+. +..|.+++|-=|.+.+..
T Consensus 52 ~vGD~V~~~~~~~~~~~i~~i~~R~~~l~R 81 (307)
T 1t9h_A 52 LVGDYVVYQAENDKEGYLMEIKERTNELIR 81 (307)
T ss_dssp CBTCEEEEECCTTSCEEEEEECCCSCEETT
T ss_pred CCCeEEEEEEcCCCceEEEEEcchhhhhhH
Confidence 389999993 356999999999888754
No 101
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=24.25 E-value=84 Score=21.41 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=21.5
Q ss_pred CCCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccc
Q 026550 65 PFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVL 106 (237)
Q Consensus 65 pf~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l 106 (237)
.|++||.|++.= .|. + -..+++.+.|-.+-.-|+-+
T Consensus 3 ~f~~GDtv~V~~---~i~--g-~k~R~q~F~GvvI~~~~~G~ 38 (98)
T 2ftc_K 3 EFYVGSILRVTT---ADP--Y-ASGKISQFLGICIQRSGRGL 38 (98)
T ss_pred ccCCCCEEEEEE---EEC--C-CceEeeeEEEEEEEEECCCC
Confidence 499999998842 111 1 13455666666666666555
No 102
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=23.94 E-value=1e+02 Score=17.78 Aligned_cols=18 Identities=6% Similarity=0.206 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 026550 192 NRRSELVLELKRIFEEAA 209 (237)
Q Consensus 192 ~~~~~l~~~i~~~l~~~g 209 (237)
++++++..++...|.+.|
T Consensus 26 K~K~EIIeAi~~El~~~~ 43 (45)
T 1use_A 26 KVKEEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 445555555555555544
No 103
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=23.90 E-value=67 Score=25.31 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=10.1
Q ss_pred CCCCCcEEEEcC
Q 026550 65 PFDVGDRCVIDG 76 (237)
Q Consensus 65 pf~vGD~I~i~~ 76 (237)
.|+|||+|.+.+
T Consensus 130 ~F~vGd~Vrv~~ 141 (219)
T 3qyh_B 130 RFAVGDKVRVLN 141 (219)
T ss_dssp CCCTTCEEEECC
T ss_pred CCCCCCEEEECC
Confidence 499999999854
No 104
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=23.87 E-value=76 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.4
Q ss_pred eeCCCCCCcEEEEcCeeEEEEEEEeE
Q 026550 62 VTHPFDVGDRCVIDGVQMVVEEMHIL 87 (237)
Q Consensus 62 ~~~pf~vGD~I~i~~~~G~V~~I~l~ 87 (237)
...-||.|..|+++|..+.|.++...
T Consensus 6 ~a~dlk~G~~I~~dg~p~~Vve~~~~ 31 (191)
T 3oyy_A 6 TAQEFRAGQVANINGAPWVIQKAEFN 31 (191)
T ss_dssp EGGGCCTTCEEEETTEEEEEEEEEEE
T ss_pred cHHhCCCCCEEEECCEEEEEEEEEee
Confidence 34669999999999999999998753
No 105
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=23.67 E-value=77 Score=24.35 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.6
Q ss_pred eeeCCCCCCcEEEEcCeeEEEEEEEeE
Q 026550 61 FVTHPFDVGDRCVIDGVQMVVEEMHIL 87 (237)
Q Consensus 61 ~~~~pf~vGD~I~i~~~~G~V~~I~l~ 87 (237)
....-||.|..|+++|..+.|.++...
T Consensus 7 ~~a~dlkkG~~I~~dG~p~~Vve~~~~ 33 (191)
T 3tre_A 7 HSTNEFRGGLKVMVDGDPCSIIDNEFV 33 (191)
T ss_dssp EEGGGCCTTCEEEETTEEEEEEEEEEE
T ss_pred EEHHHCCCCCEEEECCEEEEEEEEEEe
Confidence 446779999999999999999999773
No 106
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=23.25 E-value=91 Score=21.87 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=10.6
Q ss_pred eeCC-CCCCcEEEEc
Q 026550 62 VTHP-FDVGDRCVID 75 (237)
Q Consensus 62 ~~~p-f~vGD~I~i~ 75 (237)
-+-| |++||.|.+.
T Consensus 14 ~~iP~f~~GDtv~V~ 28 (114)
T 3r8s_P 14 QDVPSFRPGDTVEVK 28 (114)
T ss_dssp SCCCCCCTTCEEEEE
T ss_pred cCCCccCCCCEEEEE
Confidence 3444 9999999873
No 107
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=23.13 E-value=71 Score=25.35 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=10.7
Q ss_pred CCCCCCcEEEEcC
Q 026550 64 HPFDVGDRCVIDG 76 (237)
Q Consensus 64 ~pf~vGD~I~i~~ 76 (237)
-.|+|||+|.+.+
T Consensus 140 ~~F~vGd~Vrv~~ 152 (229)
T 3hht_B 140 PRFKVGERIKTKN 152 (229)
T ss_dssp CSCCTTCEEEECC
T ss_pred CCCCCCCEEEECC
Confidence 4599999999854
No 108
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=23.06 E-value=93 Score=22.79 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhheeeeCC-CCCCcEEEE
Q 026550 48 NTAKNVFEAIIFLFVTHP-FDVGDRCVI 74 (237)
Q Consensus 48 ~~~~n~~~~gi~i~~~~p-f~vGD~I~i 74 (237)
+++.. +..- ++--+-| |++||.|.+
T Consensus 5 ~li~~-ie~~-~~~~diP~F~~GDtV~V 30 (146)
T 3v2d_T 5 ALIKL-VESR-YVRTDLPEFRPGDTVRV 30 (146)
T ss_dssp HHHHH-HHHT-TCCCCCCCCCTTCEEEE
T ss_pred HHHHH-HHHH-HhhccCCCcCCCCEEEE
Confidence 44444 3332 3444555 999999987
No 109
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=22.52 E-value=85 Score=19.31 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=22.4
Q ss_pred eCCCCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEeccc
Q 026550 63 THPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSV 105 (237)
Q Consensus 63 ~~pf~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~ 105 (237)
..|.+.||.+++ +|++++..--=+-..+|..+++|++.
T Consensus 8 ~~~~~~~~~~~~-----~I~~l~~~G~Gva~~~g~~vfV~~al 45 (68)
T 1yez_A 8 SVPVEEGEVYDV-----TIQDIARQGDGIARIEGFVIFVPGTK 45 (68)
T ss_dssp CCSCCTTEEEEE-----ECCEEETTTEEEEEETTEEEEEESCC
T ss_pred cCccCCCCEEEE-----EEEEcCCCccEEEEECCEEEECcCCC
Confidence 346778886543 33333333333334589999999973
No 110
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=22.43 E-value=3e+02 Score=21.97 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=39.9
Q ss_pred HHHHHHHhhCCCCC--CCCcEEEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCc
Q 026550 143 STIKNYLESKPRHW--SPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIR 211 (237)
Q Consensus 143 ~~i~~~l~~~~~~~--~~~~~v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~ 211 (237)
..|++++++-.+.. .....+...++++.++-+.+.|.+ +.+++-...+..+|.++|=.
T Consensus 67 d~IerAIkk~~g~~~~~~yeei~YEgyGPgGvaviVe~lT-----------DN~nRT~~~vR~~f~K~gG~ 126 (247)
T 4f3q_A 67 DTITRAIKRGAGSGAGDNLVEVRYEGYGPSGVAVMVDCLT-----------DNKNRTVAEVRHAFSKCDGN 126 (247)
T ss_dssp HHHHHHHHHCC-----CCCEEEEEEEECGGGCEEEEEEEE-----------SCHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHhcCCCCcCCceEEEEEEEcCCCeEEEEEEeC-----------CCHhHHHHHHHHHHHhcCce
Confidence 45556666655432 345678899999999999999964 34455667788888888755
No 111
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=22.36 E-value=32 Score=25.20 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.6
Q ss_pred CCCCcEEEEcCeeEEEE
Q 026550 66 FDVGDRCVIDGVQMVVE 82 (237)
Q Consensus 66 f~vGD~I~i~~~~G~V~ 82 (237)
++-||+|++++..|+|+
T Consensus 114 i~~G~~v~vd~~~G~v~ 130 (141)
T 2hi6_A 114 VKTGDRVVVNADEGYVE 130 (141)
T ss_dssp CCTTSEEEEETTTTEEE
T ss_pred hcCCCEEEEeCCCCEEE
Confidence 46699999999998885
No 112
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=22.05 E-value=1.2e+02 Score=17.46 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=30.5
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEEeeeCc
Q 026550 125 VEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDE 170 (237)
Q Consensus 125 ~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~v~~~~~~~~ 170 (237)
+++.+....+.++-+++-+.+.+.+.+.-++......+.+.+....
T Consensus 3 i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~~~ 48 (61)
T 2opa_A 3 VTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMRKD 48 (61)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGG
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHH
Confidence 3455555556777677888888888876665444567777777653
No 113
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=21.78 E-value=55 Score=23.34 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccCCcEEEEE
Q 026550 66 FDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFY 115 (237)
Q Consensus 66 f~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s 115 (237)
-++||.|+-|+..|.|+.....+...--.+|+++-+-..-.-+-...|-.
T Consensus 44 p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~d 93 (128)
T 1onl_A 44 PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQD 93 (128)
T ss_dssp BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHC
T ss_pred cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccC
Confidence 49999999999999999999888777778899888833333333444533
No 114
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=21.43 E-value=1.7e+02 Score=19.94 Aligned_cols=41 Identities=7% Similarity=-0.042 Sum_probs=27.9
Q ss_pred eCCCCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccC
Q 026550 63 THPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLAT 108 (237)
Q Consensus 63 ~~pf~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~ 108 (237)
...+++||. +.|+|.++.=.-.-+.-.+|..-.+|.+.+..
T Consensus 25 ~~~~~~G~~-----~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~ 65 (115)
T 2khi_A 25 AKRYPEGTK-----LTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 65 (115)
T ss_dssp SCSSCSSCE-----EEEEEEEEETTEEEEECSTTCEEEEETTSSSC
T ss_pred hhcCCCCCE-----EEEEEEEEECCEEEEEECCCCEEEEEHHHCCc
Confidence 456778875 56788877655544554557778889888854
No 115
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=21.34 E-value=86 Score=21.67 Aligned_cols=44 Identities=11% Similarity=0.220 Sum_probs=30.8
Q ss_pred EEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCC
Q 026550 112 SNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRH 155 (237)
Q Consensus 112 ~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~ 155 (237)
.|+.+.....+..+-|.+..+.+.++++++++.++....+.|++
T Consensus 13 ~~~~~~~~mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i 56 (116)
T 3bgu_A 13 ENLYFQGMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPEL 56 (116)
T ss_dssp CCCCCSSCEEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTE
T ss_pred hhhhcCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCce
Confidence 46666664556678899999988888777777766655456655
No 116
>4e3e_A MAOC domain protein dehydratase; structural genomics, protein structure initiative, nysgrc, PSI-biology; 1.90A {Chloroflexus aurantiacus}
Probab=21.13 E-value=1.8e+02 Score=24.22 Aligned_cols=17 Identities=12% Similarity=-0.140 Sum_probs=14.4
Q ss_pred eeeeCCCCCCcEEEEcC
Q 026550 60 LFVTHPFDVGDRCVIDG 76 (237)
Q Consensus 60 i~~~~pf~vGD~I~i~~ 76 (237)
+-+.+|..+||.+.+..
T Consensus 93 ~rF~~PV~~GDtL~~~~ 109 (352)
T 4e3e_A 93 GRFGAVVYPGDTLSTTS 109 (352)
T ss_dssp EEECSCCCTTCEEEEEE
T ss_pred EEEcCCcCCCCEEEEEE
Confidence 57889999999998754
No 117
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=21.11 E-value=3.2e+02 Score=21.82 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=39.4
Q ss_pred HHHHHHHhhCCCCC--CCCcEEEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCc
Q 026550 143 STIKNYLESKPRHW--SPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIR 211 (237)
Q Consensus 143 ~~i~~~l~~~~~~~--~~~~~v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~ 211 (237)
..|++++++..+.. .....+...++++.++-+.+.|.+ +.+++....+..+|.++|=.
T Consensus 67 d~IerAIkk~~G~~~~~~~eei~YEgyGPgGvaiiVe~lT-----------DN~nRt~~~vR~~f~K~GG~ 126 (249)
T 1kon_A 67 DTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLS-----------DNRNRTVAEVRHAFSKCGGN 126 (249)
T ss_dssp HHHHHHHSCC------CCCEEEEEEEEETTTEEEEEEEEE-----------SCHHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHhccCCCcccCeEEEEEEEECCCceEEEEEEec-----------CCHHHHHHHHHHHHhhcCce
Confidence 45666676654432 245678889999999999999864 33555667788888888754
No 118
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=20.98 E-value=1.3e+02 Score=19.68 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=22.8
Q ss_pred HHhhhheeeeCCCCCCcEEEE--cCeeEEEEEEE
Q 026550 54 FEAIIFLFVTHPFDVGDRCVI--DGVQMVVEEMH 85 (237)
Q Consensus 54 ~~~gi~i~~~~pf~vGD~I~i--~~~~G~V~~I~ 85 (237)
++|.++=.+.+-=++||.+.+ +|..-+|.++.
T Consensus 45 lgG~i~~~lg~iP~~Gd~v~~~~~~~~f~V~~~~ 78 (93)
T 2r2z_A 45 MAGYLITALGTIPDEGEKPSFEVGNIKLTAEEME 78 (93)
T ss_dssp HHHHHHHHHSSCCCTTCCCEEEETTEEEEEEEEE
T ss_pred HHHHHHHHhCCCCCCCCEEEEecCCEEEEEEEee
Confidence 333333345666689999988 99888888876
No 119
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=20.95 E-value=1.4e+02 Score=17.49 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=30.3
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEEeeeCc
Q 026550 125 VEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDE 170 (237)
Q Consensus 125 ~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~v~~~~~~~~ 170 (237)
+++.+....+.++-+++.+.+.+.+.+..+.......+.+.+....
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~ 49 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRD 49 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGG
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHH
Confidence 4455555556666677888888888877666444566767776653
No 120
>2b3n_A Hypothetical protein AF1124; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A 3k67_A
Probab=20.76 E-value=1.3e+02 Score=21.84 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=25.1
Q ss_pred hhheeeeCCCCCCcEEEEcCeeEEEEEE----EeEEEEEEEeCCcEEE
Q 026550 57 IIFLFVTHPFDVGDRCVIDGVQMVVEEM----HILTTTFLRYDNEKIF 100 (237)
Q Consensus 57 gi~i~~~~pf~vGD~I~i~~~~G~V~~I----~l~~T~i~~~~g~~v~ 100 (237)
..-+-+.+|..+||.+.+.. +|.++ -...+.. +.+|+.+.
T Consensus 107 ~~~~rF~~PV~~GD~L~~~~---~v~~~~~~~v~~~~~~-~~~G~~V~ 150 (159)
T 2b3n_A 107 EQSFRYTSPVRIGDVVRVEG---VVSGVEKNRYTIDVKC-YTGDKVVA 150 (159)
T ss_dssp EEEEEECSCCCTTCEEEEEE---EEEEEETTEEEEEEEE-EETTEEEE
T ss_pred eeeeEECCCcCCCCEEEEEE---EEEEEcCCEEEEEEEE-EeCCeEEE
Confidence 35578899999999998865 23222 1223444 66776654
No 121
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=20.71 E-value=85 Score=24.83 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=10.0
Q ss_pred CCCCCcEEEEcC
Q 026550 65 PFDVGDRCVIDG 76 (237)
Q Consensus 65 pf~vGD~I~i~~ 76 (237)
.|++||+|.+-+
T Consensus 138 ~F~vGd~Vrv~~ 149 (226)
T 1ugp_B 138 KFKEGDVVRFST 149 (226)
T ss_dssp SCCTTCEEEECC
T ss_pred cCCCCCeEEEcc
Confidence 499999999844
No 122
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=20.44 E-value=52 Score=22.43 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=26.8
Q ss_pred CCCCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccCCcE
Q 026550 64 HPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPI 111 (237)
Q Consensus 64 ~pf~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~~~i 111 (237)
..+++||. +.|+|.++.=...-+.-.+|..-.+|.+.+....+
T Consensus 27 ~~~~~G~i-----v~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~ 69 (109)
T 2khj_A 27 ALNKKGAI-----VTGKVTAVDAKGATVELADGVEGYLRASEASRDRV 69 (109)
T ss_dssp TTCCSSSE-----EEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSS
T ss_pred hcCCCCCE-----EEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccc
Confidence 56788887 56788887654444444345555677777765443
No 123
>3f5o_A Thioesterase superfamily member 2; hotdog fold, hydrolase; HET: UOC COA P6G; 1.70A {Homo sapiens} SCOP: d.38.1.5 PDB: 2f0x_A* 2cy9_A
Probab=20.34 E-value=66 Score=22.79 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=25.8
Q ss_pred hhhheeeeCCCCCCcEEEEcCeeEEEEEEEeE----EEEEEEe-CCcEEEE
Q 026550 56 AIIFLFVTHPFDVGDRCVIDGVQMVVEEMHIL----TTTFLRY-DNEKIFY 101 (237)
Q Consensus 56 ~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~l~----~T~i~~~-~g~~v~I 101 (237)
.-+-+-+-+|.+.||.+.+.+ +|.+.+=+ ...+.+. +|+.+.-
T Consensus 84 ~~l~i~fl~p~~~G~~l~~~a---~v~~~g~~~~~~~~~i~~~~~g~lva~ 131 (148)
T 3f5o_A 84 VDMNITYMSPAKLGEDIVITA---HVLKQGKTLAFTSVDLTNKATGKLIAQ 131 (148)
T ss_dssp EEEEEEECSCCBTTCEEEEEE---EEEEECSSEEEEEEEEEETTTCCEEEE
T ss_pred EEEEEEEeCCCCCCCEEEEEE---EEEEcCCeEEEEEEEEEECCCCeEEEE
Confidence 335577889999999998753 44444322 2334443 4555443
No 124
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=20.22 E-value=3.3e+02 Score=21.61 Aligned_cols=56 Identities=7% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHhhCCCCCCCCcEEEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcC
Q 026550 143 STIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAA 209 (237)
Q Consensus 143 ~~i~~~l~~~~~~~~~~~~v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g 209 (237)
..|++++++..+.-.....+...++++.++-+.+.|.+ +.+++....+..+|.++|
T Consensus 62 d~IerAIkk~~g~~~~~eei~YEgyGPgGvaiiVe~lT-----------DN~nRt~~~vR~~f~K~g 117 (240)
T 1mw7_A 62 DNIDAAIKRASSKEGNLSEITYEGKANFGVLIIMECMT-----------DNPTRTIANLKSYFNKTQ 117 (240)
T ss_dssp HHHHHHHHHTTSTTCCCEEEEEEEEETTTEEEEEEEEE-----------SCHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHhcCCCCCeEEEEEEEECCCceEEEEEEec-----------CCHHHHHHHHHHHHhhcC
Confidence 34455566544332235678889999999999999864 335556677888888888
No 125
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=20.19 E-value=3.3e+02 Score=21.77 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=32.7
Q ss_pred CCcEEEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCc
Q 026550 158 PTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIR 211 (237)
Q Consensus 158 ~~~~v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~ 211 (237)
....+...++++.++-+.+.|.+ +.+++....+..+|.++|=.
T Consensus 81 ~~eei~YEgyGPgGvaiiVe~lT-----------DN~nRt~~~vR~~f~K~GG~ 123 (249)
T 1lfp_A 81 QFEEVIYEGYAPGGVAVMVLATT-----------DNRNRTTSEVRHVFTKHGGN 123 (249)
T ss_dssp CCEEEEEEEEETTTEEEEEEEEE-----------SCHHHHHHHHHHHHHHTTCE
T ss_pred ceEEEEEEEECCCceEEEEEEec-----------CCHHHHHHHHHHHHhhcCce
Confidence 45678889999999999999864 33555667778888888654
No 126
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.12 E-value=2e+02 Score=18.97 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=31.4
Q ss_pred CCCCCCcEEEE----cC--eeEEEEEEEe---EEEEEEEeCCcEEEEecccccC
Q 026550 64 HPFDVGDRCVI----DG--VQMVVEEMHI---LTTTFLRYDNEKIFYPNSVLAT 108 (237)
Q Consensus 64 ~pf~vGD~I~i----~~--~~G~V~~I~l---~~T~i~~~~g~~v~IPNs~l~~ 108 (237)
.++++||.+.. || ..++|.++.- ..+..-..-|+.=.+|-+.|..
T Consensus 9 ~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp 62 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLS 62 (88)
T ss_dssp CCCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHccc
Confidence 47899999976 44 7799999963 3444444346767788777754
No 127
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=20.11 E-value=4.2e+02 Score=22.80 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=54.0
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhh------CCCCCCCCcEEEEEeeeC-ceEEEEEEEE-EeecccchHHHHHHHHH
Q 026550 125 VEFAIDVFTPIEKISYLKSTIKNYLES------KPRHWSPTHSVVVKHIKD-EKMIMGLYIT-HIIIFENYEEKINRRSE 196 (237)
Q Consensus 125 ~~~~v~~~~~~~~i~~~~~~i~~~l~~------~~~~~~~~~~v~~~~~~~-~~v~~~v~~~-~~~~~~~~~~~~~~~~~ 196 (237)
..+.|.|. +....+++.-.+++++.+ +|.+ ...+.++++-. +.+++++-+. +.....+.++|...+.+
T Consensus 164 TS~gVGyA-PlS~~E~~Vl~~E~~Lns~~~k~~~P~~---GeDIKVMG~R~g~~i~LTvA~a~v~r~v~~~~~Y~~~K~~ 239 (407)
T 4hpv_A 164 TSFGVGFA-PLTKLEKLVYETERHLNSKQFKAKLPEV---GEDIKVMGLRRGNEVDLTIAMATISELIEDVNHYINVKEQ 239 (407)
T ss_dssp CCEEEEEE-SCCHHHHHHHHHHHHHHSHHHHHHCTTE---EEEEEEEEEEETTEEEEEEEEEEEGGGCCSHHHHHHHHHH
T ss_pred cCceeccC-CCCHHHHHHHHHHHHhcchhhhhhCccc---CCceEEEEEeeCCeEEEEEEhhhhhhhhCCHHHHHHHHHH
Confidence 34555554 333444455555555543 4444 24688898885 9999999874 55556777889999999
Q ss_pred HHHHHHHHHHHc
Q 026550 197 LVLELKRIFEEA 208 (237)
Q Consensus 197 l~~~i~~~l~~~ 208 (237)
+...+.+...+.
T Consensus 240 v~~~v~~~a~~~ 251 (407)
T 4hpv_A 240 VRNQILDLASKI 251 (407)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999888877654
Done!