Query 026551
Match_columns 237
No_of_seqs 157 out of 199
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 09:29:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0227 Splicing factor 3a, su 100.0 8E-54 1.7E-58 372.9 8.7 115 5-119 106-220 (222)
2 COG5246 PRP11 Splicing factor 100.0 4.8E-38 1E-42 273.3 7.6 109 5-115 112-220 (222)
3 PF09732 CactinC_cactus: Cactu 99.8 6.3E-19 1.4E-23 144.8 8.7 83 25-115 37-122 (125)
4 KOG1924 RhoA GTPase effector D 98.8 3.7E-08 8E-13 100.9 10.0 36 171-211 568-603 (1102)
5 KOG1924 RhoA GTPase effector D 98.6 1.7E-07 3.6E-12 96.2 9.9 14 179-192 566-579 (1102)
6 KOG2370 Cactin [Signal transdu 97.4 0.00012 2.6E-09 72.5 3.1 77 29-114 539-619 (623)
7 KOG3671 Actin regulatory prote 97.0 0.01 2.3E-07 59.2 12.8 40 98-137 284-324 (569)
8 KOG0132 RNA polymerase II C-te 89.3 12 0.00027 39.8 14.6 15 93-107 500-514 (894)
9 KOG0132 RNA polymerase II C-te 83.9 18 0.00038 38.8 12.3 18 97-114 531-548 (894)
10 PF06346 Drf_FH1: Formin Homol 79.1 16 0.00035 31.9 8.5 11 210-220 142-152 (160)
11 PHA03378 EBNA-3B; Provisional 71.8 88 0.0019 33.7 13.0 13 213-225 777-789 (991)
12 KOG2893 Zn finger protein [Gen 57.7 1E+02 0.0022 29.4 9.6 15 5-19 2-16 (341)
13 KOG1830 Wiskott Aldrich syndro 54.5 1.8E+02 0.004 29.6 11.2 8 105-112 247-254 (518)
14 PF08190 PIH1: pre-RNA process 51.8 89 0.0019 27.9 8.0 69 25-109 257-326 (328)
15 KOG1923 Rac1 GTPase effector F 50.3 85 0.0018 33.8 8.5 9 102-110 242-250 (830)
16 COG0231 Efp Translation elonga 46.3 62 0.0013 26.9 5.7 103 5-108 11-126 (131)
17 PF09034 TRADD_N: TRADD, N-ter 44.6 8.4 0.00018 32.0 0.3 37 12-55 5-41 (111)
18 TIGR00037 eIF_5A translation i 42.2 33 0.00071 28.4 3.5 75 7-83 16-102 (130)
19 PF13584 BatD: Oxygen toleranc 38.4 68 0.0015 30.6 5.4 33 64-107 339-371 (484)
20 KOG4307 RNA binding protein RB 35.0 9.9 0.00021 40.4 -0.8 35 9-57 860-894 (944)
21 PF08004 DUF1699: Protein of u 34.6 41 0.00088 28.7 2.9 59 47-106 2-88 (131)
22 PHA03247 large tegument protei 34.6 7.7E+02 0.017 30.9 13.5 8 94-101 2535-2542(3151)
23 KOG4849 mRNA cleavage factor I 34.2 2.1E+02 0.0045 28.7 8.0 72 134-214 254-341 (498)
24 PF10974 DUF2804: Protein of u 31.3 56 0.0012 30.3 3.5 44 62-108 39-82 (333)
25 COG0774 LpxC UDP-3-O-acyl-N-ac 31.2 55 0.0012 31.3 3.5 89 10-101 65-176 (300)
26 PHA03378 EBNA-3B; Provisional 31.1 5.2E+02 0.011 28.2 10.7 8 127-134 690-697 (991)
27 PRK03999 translation initiatio 30.9 1E+02 0.0022 25.4 4.7 73 9-83 17-101 (129)
28 PF08954 DUF1900: Domain of un 30.1 40 0.00088 28.2 2.2 23 85-107 5-27 (136)
29 COG5040 BMH1 14-3-3 family pro 29.6 3.5 7.6E-05 37.9 -4.5 40 30-69 43-82 (268)
30 PF11281 DUF3083: Protein of u 26.6 66 0.0014 31.0 3.2 31 88-118 243-273 (316)
31 TIGR00038 efp translation elon 25.4 1.3E+02 0.0028 26.0 4.6 72 7-80 10-92 (184)
32 PF14492 EFG_II: Elongation Fa 21.0 60 0.0013 23.9 1.4 24 87-110 28-51 (75)
33 PF09149 DUF1935: Domain of un 20.7 84 0.0018 25.2 2.3 21 91-112 30-50 (104)
34 KOG0841 Multifunctional chaper 20.2 12 0.00026 34.8 -2.9 49 18-66 28-76 (247)
No 1
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=100.00 E-value=8e-54 Score=372.89 Aligned_cols=115 Identities=63% Similarity=1.028 Sum_probs=111.2
Q ss_pred CcceeEeCCCCceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecccccccCCCCCCccEEEEEecCCccceeeecC
Q 026551 5 GAYAVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPS 84 (237)
Q Consensus 5 ~kk~vKIGRPgYKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE~pDk~~QYLv~AaEPYEtIaFKIPn 84 (237)
.|++||||||||||||+||+++||+||||||+|++|+++++|||||||+|||+||.+|++||||||||||||||||||||
T Consensus 106 vk~~vkigrpgykvtk~r~~~~gq~~L~fQv~Yp~i~~~~~Pr~rfmssyeq~ve~~dk~~qyLvfaaePyE~Iafk~p~ 185 (222)
T KOG0227|consen 106 VKKFVKIGRPGYKVTKQRDPENGQQGLLFQVNYPEIEEGIMPRHRFMSSYEQKVEPPDKSWQYLVFAAEPYENIAFKVPS 185 (222)
T ss_pred hhhhhhcCCCcceeeeeecCccCceeeEEEecchhhhhccCCcchhhhhhHhhcCCccccceEEEEEeccccceeeecCc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeeecCCCCEEEEEEeeccCCCCCC
Q 026551 85 TEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGN 119 (237)
Q Consensus 85 ~EIDk~~~k~wt~WD~dtK~F~LQf~Fk~e~~~~~ 119 (237)
+|||+++||||||||.|||+|+|||+|+.++.+.+
T Consensus 186 ~Eid~se~Kf~t~wd~~tk~y~lqF~fk~~~~~~~ 220 (222)
T KOG0227|consen 186 REIDKSEGKFWTHWDAETKQYTLQFFFKQAEPEQP 220 (222)
T ss_pred hhhhhccCceeeeecCCCceEEEEEEecccCccCC
Confidence 99999999999999999999999999998876643
No 2
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=100.00 E-value=4.8e-38 Score=273.25 Aligned_cols=109 Identities=35% Similarity=0.646 Sum_probs=103.0
Q ss_pred CcceeEeCCCCceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecccccccCCCCCCccEEEEEecCCccceeeecC
Q 026551 5 GAYAVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPS 84 (237)
Q Consensus 5 ~kk~vKIGRPgYKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE~pDk~~QYLv~AaEPYEtIaFKIPn 84 (237)
|+..++||+|+|||.+++++++|.+||.|||+|+++...++|++||||+|||+||..|+++|||||||||||||||||++
T Consensus 112 KqSlk~~GiP~ykv~~~~epk~G~~Gl~iqvnY~Dd~a~~~P~yRivs~lEq~ve~~d~~f~yLV~a~ePyEnIafk~~~ 191 (222)
T COG5246 112 KQSLKRSGIPSYKVRSLVEPKGGRRGLGIQVNYEDDLAEEMPQYRIVSSLEQNVEEYDESFRYLVFACEPYENIAFKFEN 191 (222)
T ss_pred HHHHHhcCCCceeEEEeecCCCCceeeEEEEeccchhhccCcceehhhhhhhcchhhcccceEEEEEeccccceeeecCC
Confidence 45567999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeeecCCCCEEEEEEeeccCC
Q 026551 85 TEIDKSTPKFFSHWDPDSKMFTLQLYFKSKP 115 (237)
Q Consensus 85 ~EIDk~~~k~wt~WD~dtK~F~LQf~Fk~e~ 115 (237)
.|||.. +.|++||..|++|+|||||+...
T Consensus 192 ~ei~f~--s~~~~wDa~~~tYt~qFff~~a~ 220 (222)
T COG5246 192 KEIDFL--SIYEDWDAETGTYTLQFFFLEAG 220 (222)
T ss_pred Cccchh--hhcccccccCceEEEEEeeeccc
Confidence 999977 47889999999999999998754
No 3
>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.
Probab=99.78 E-value=6.3e-19 Score=144.79 Aligned_cols=83 Identities=30% Similarity=0.449 Sum_probs=72.5
Q ss_pred CCCceeeEEEEEcCCccC-CCCcceeeecccccccCCCCCCccEEEEE-ecCCccceeeecCcccccCCC-cceeeecCC
Q 026551 25 ETKQRSLLFQIEYPEIED-LSKPRHRFMSSFEQRVQPFDKRYQYLMFA-AEPYEIIAFKVPSTEIDKSTP-KFFSHWDPD 101 (237)
Q Consensus 25 eT~q~gLlfqVdYPei~~-g~~Pr~RfMSayEQkvE~pDk~~QYLv~A-aEPYEtIaFKIPn~EIDk~~~-k~wt~WD~d 101 (237)
-...+|++|+|.|||+.+ +..|+||||+ ++. ++++++|+|+ ++|||+|||||.|+|+|.+.. .|+++||.
T Consensus 37 PK~vqGYkFnIfYPdL~d~~~~P~y~i~~-----~~~-~~~~~~L~F~AgpPYeDIAFkIvnrEWd~s~k~Gfr~~Fd~- 109 (125)
T PF09732_consen 37 PKIVQGYKFNIFYPDLIDKSKTPRYRIEP-----DED-NPDFCILRFHAGPPYEDIAFKIVNREWDYSHKRGFRCSFDR- 109 (125)
T ss_pred CceeeeeEEEEECCcccCCCCCCcEEEEE-----CCC-CCCEEEEEEeCCCCCcCEEEEEecCeeecCCCCCceEEeeC-
Confidence 345689999999999965 6789999999 333 8999999995 699999999999999999987 68999986
Q ss_pred CCEEEEEEeeccCC
Q 026551 102 SKMFTLQLYFKSKP 115 (237)
Q Consensus 102 tK~F~LQf~Fk~e~ 115 (237)
++|.|+|+||..+
T Consensus 110 -gilqL~F~FKr~~ 122 (125)
T PF09732_consen 110 -GILQLYFNFKRYR 122 (125)
T ss_pred -CEEEEEEEEEhhh
Confidence 6999999999754
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=3.7e-08 Score=100.89 Aligned_cols=36 Identities=44% Similarity=0.898 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 026551 171 ANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTM 211 (237)
Q Consensus 171 ~~~p~p~p~~g~p~~ppppp~~~~~~~~f~~~~~p~~~~~~ 211 (237)
|++|+|+++.|+.++|||||.+ +|-+|.++|++++|
T Consensus 568 G~PPpPppppg~~gppPPPpp~-----g~~Gg~ppPP~~gm 603 (1102)
T KOG1924|consen 568 GGPPPPPPPPGGGGPPPPPPPG-----GFLGGPPPPPPPGM 603 (1102)
T ss_pred CCCCccCCCCCCCCCCCcCCCC-----CCCCCCCCCCCCCc
Confidence 3444444445555444444433 23455555545444
No 5
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=1.7e-07 Score=96.25 Aligned_cols=14 Identities=71% Similarity=1.704 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCC
Q 026551 179 PGGAPPAPPPPPGG 192 (237)
Q Consensus 179 ~~g~p~~ppppp~~ 192 (237)
-.|+|++|||++|+
T Consensus 566 ~aG~PPpPppppg~ 579 (1102)
T KOG1924|consen 566 IAGGPPPPPPPPGG 579 (1102)
T ss_pred ccCCCCccCCCCCC
Confidence 34555555555555
No 6
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=97.37 E-value=0.00012 Score=72.54 Aligned_cols=77 Identities=26% Similarity=0.404 Sum_probs=57.1
Q ss_pred eeeEEEEEcCCc-cCCCCcceeeecccccccCCCCCCccEE-EEEecCCccceeeecCcccccCC--CcceeeecCCCCE
Q 026551 29 RSLLFQIEYPEI-EDLSKPRHRFMSSFEQRVQPFDKRYQYL-MFAAEPYEIIAFKVPSTEIDKST--PKFFSHWDPDSKM 104 (237)
Q Consensus 29 ~gLlfqVdYPei-~~g~~Pr~RfMSayEQkvE~pDk~~QYL-v~AaEPYEtIaFKIPn~EIDk~~--~k~wt~WD~dtK~ 104 (237)
+|.-|.|-||++ +.+..|+|||-++-.- .++--| ..|.+|||.|||+|=|+|-+.+- |-.|+| +..+
T Consensus 539 QGYkFNIFYPDLidk~~aP~y~ie~~~d~------~d~ciIRF~aGpPYeDIAFkIVnkeWeyshKrGfKcqF---~ngv 609 (623)
T KOG2370|consen 539 QGYKFNIFYPDLIDKGRAPTYRIERCRDK------NDFCIIRFHAGPPYEDIAFKIVNKEWEYSHKRGFKCQF---DNGV 609 (623)
T ss_pred cceeecccchhhhccccCCeeeeeecCCC------CceEEEEeccCCcchhhhhhhhcchhhhhhhcCcccee---eCCe
Confidence 699999999997 5568999998765332 133322 45799999999999999887754 334544 4578
Q ss_pred EEEEEeeccC
Q 026551 105 FTLQLYFKSK 114 (237)
Q Consensus 105 F~LQf~Fk~e 114 (237)
|.|-|+||.-
T Consensus 610 lqL~F~FKk~ 619 (623)
T KOG2370|consen 610 LQLWFRFKKY 619 (623)
T ss_pred eeeeehhhhh
Confidence 9999999853
No 7
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.05 E-value=0.01 Score=59.21 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=22.8
Q ss_pred ecCCCCEEEEEEeecc-CCCCCCCCCCCCCCCCCCCCCCCC
Q 026551 98 WDPDSKMFTLQLYFKS-KPVEGNKPQAAPAANGAVAPPPPP 137 (237)
Q Consensus 98 WD~dtK~F~LQf~Fk~-e~~~~~~~q~~~~~~~~~~ppppp 137 (237)
-|+||+.|..-|.=|. ...+.-++.++.-++....|+||+
T Consensus 284 ~~~~t~~fi~~fi~k~~~~~~Sv~~~~~~lp~q~~~P~PPP 324 (569)
T KOG3671|consen 284 TERDTMKFIYDFIQKNPNGLPSVGQSAAELPRQKKRPPPPP 324 (569)
T ss_pred cchhhccccccchhcCCCCCcccccchhhcccccCCCCCcC
Confidence 3778888888777666 444544443333344444444444
No 8
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=89.31 E-value=12 Score=39.83 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=11.4
Q ss_pred cceeeecCCCCEEEE
Q 026551 93 KFFSHWDPDSKMFTL 107 (237)
Q Consensus 93 k~wt~WD~dtK~F~L 107 (237)
.|++|||.++.+-|+
T Consensus 500 e~k~~wD~~lGVt~I 514 (894)
T KOG0132|consen 500 EYKDYWDVELGVTYI 514 (894)
T ss_pred hhhhhhhcccCeeEe
Confidence 578889988877663
No 9
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=83.92 E-value=18 Score=38.78 Aligned_cols=18 Identities=11% Similarity=-0.118 Sum_probs=10.7
Q ss_pred eecCCCCEEEEEEeeccC
Q 026551 97 HWDPDSKMFTLQLYFKSK 114 (237)
Q Consensus 97 ~WD~dtK~F~LQf~Fk~e 114 (237)
-||.||..-..-...+.|
T Consensus 531 m~d~~t~~p~~kgi~~~E 548 (894)
T KOG0132|consen 531 MLDGTTGPPEWKGIAKDE 548 (894)
T ss_pred eecCccCCcccccccccC
Confidence 478887665554455533
No 10
>PF06346 Drf_FH1: Formin Homology Region 1; InterPro: IPR009408 This domain is found in some of the Diaphanous related formins (Drfs) []. It consists of low complexity repeats of around 12 residues.
Probab=79.13 E-value=16 Score=31.88 Aligned_cols=11 Identities=73% Similarity=1.721 Sum_probs=5.0
Q ss_pred CCCCCCCCCCC
Q 026551 210 TMPPPPPQGYG 220 (237)
Q Consensus 210 ~~~~~p~~gf~ 220 (237)
+++++++-||+
T Consensus 142 g~ppP~p~g~g 152 (160)
T PF06346_consen 142 GMPPPPPFGFG 152 (160)
T ss_pred CCCCCCccccC
Confidence 44444444554
No 11
>PHA03378 EBNA-3B; Provisional
Probab=71.85 E-value=88 Score=33.69 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCC
Q 026551 213 PPPPQGYGGQQMP 225 (237)
Q Consensus 213 ~~p~~gf~~~~~~ 225 (237)
++++||-+.-++.
T Consensus 777 ~~pPq~~P~~~Qr 789 (991)
T PHA03378 777 QPPPQAPPAPQQR 789 (991)
T ss_pred CCCCCCCCccccC
Confidence 4456665554444
No 12
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=57.72 E-value=1e+02 Score=29.41 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=7.8
Q ss_pred CcceeEeCCCCceEE
Q 026551 5 GAYAVKIGRPGYRVT 19 (237)
Q Consensus 5 ~kk~vKIGRPgYKVT 19 (237)
++|..|+-+|-|-.+
T Consensus 2 grkkkk~~kpwcwyc 16 (341)
T KOG2893|consen 2 GRKKKKVDKPWCWYC 16 (341)
T ss_pred CccccccCCceeeec
Confidence 344455555655544
No 13
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=54.49 E-value=1.8e+02 Score=29.59 Aligned_cols=8 Identities=25% Similarity=-0.072 Sum_probs=3.4
Q ss_pred EEEEEeec
Q 026551 105 FTLQLYFK 112 (237)
Q Consensus 105 F~LQf~Fk 112 (237)
+.|++-|+
T Consensus 247 ~~lp~~~~ 254 (518)
T KOG1830|consen 247 SSLPPNPK 254 (518)
T ss_pred hccCCCcc
Confidence 33444444
No 14
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=51.79 E-value=89 Score=27.92 Aligned_cols=69 Identities=22% Similarity=0.378 Sum_probs=42.9
Q ss_pred CCCceeeEEEEEcCCccCCCCcceeeecccccccCCCCCCccEEEEEecC-CccceeeecCcccccCCCcceeeecCCCC
Q 026551 25 ETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEP-YEIIAFKVPSTEIDKSTPKFFSHWDPDSK 103 (237)
Q Consensus 25 eT~q~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE~pDk~~QYLv~AaEP-YEtIaFKIPn~EIDk~~~k~wt~WD~dtK 103 (237)
.+.-..|.++|++|.+.. ++..++.|+ -.+|++.++- .-...+.+|- .||.+.++ --||.+++
T Consensus 257 ~~~p~~lvv~i~LP~~~s--------~~~i~LdV~-----~~~l~l~~~~~~y~L~l~LP~-~V~~~~~~--Akf~~~~~ 320 (328)
T PF08190_consen 257 SGSPEELVVEIELPGVES--------ASDIDLDVS-----EDRLSLSSPKPKYRLDLPLPY-PVDEDNGK--AKFDKKTK 320 (328)
T ss_pred CCCCceEEEEEECCCcCc--------cceeEEEEe-----CCEEEEEeCCCceEEEccCCC-cccCCCce--EEEccCCC
Confidence 445578999999987632 244555332 2356665555 2234455554 55655443 68999999
Q ss_pred EEEEEE
Q 026551 104 MFTLQL 109 (237)
Q Consensus 104 ~F~LQf 109 (237)
+.+|.|
T Consensus 321 ~L~vtl 326 (328)
T PF08190_consen 321 TLTVTL 326 (328)
T ss_pred EEEEEE
Confidence 999876
No 15
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=50.25 E-value=85 Score=33.76 Aligned_cols=9 Identities=33% Similarity=0.342 Sum_probs=3.7
Q ss_pred CCEEEEEEe
Q 026551 102 SKMFTLQLY 110 (237)
Q Consensus 102 tK~F~LQf~ 110 (237)
+|.=-+|..
T Consensus 242 ~ki~emq~~ 250 (830)
T KOG1923|consen 242 TKIGEMQLA 250 (830)
T ss_pred CCccccccc
Confidence 343344443
No 16
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=46.28 E-value=62 Score=26.86 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=67.5
Q ss_pred CcceeEeCCCCceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecc--cccccCCCCCCccEEEEE--------ecC
Q 026551 5 GAYAVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSS--FEQRVQPFDKRYQYLMFA--------AEP 74 (237)
Q Consensus 5 ~kk~vKIGRPgYKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSa--yEQkvE~pDk~~QYLv~A--------aEP 74 (237)
+..++.|..=-|+|.+...-.+|+.|-.++|.+-.+.+|.+=-.||-++ .|+ ..-..++.|||-+. -|=
T Consensus 11 ~G~~i~~dg~~~~V~~~~~~KpGKg~a~vrvk~k~l~tG~~~e~~f~~~~kve~-a~ie~~~~q~lY~dg~~~~FMD~et 89 (131)
T COG0231 11 KGLYIVIDGEPYVVVEISHVKPGKGGAFVRVKLKNLFTGKKVEKTFKADDKVEV-AIVERKTAQYLYIDGDFYVFMDLET 89 (131)
T ss_pred CCCEEEECCeEEEEEEEEEccCCCCCcEEEEEEEEccCCCEEEEEEcCCCEEEE-eEEeeeeEEEEEcCCCeEEEccCCC
Confidence 3455667766799999999999998889999999998886655555553 333 22456677776554 488
Q ss_pred CccceeeecCcc--ccc-CCCcceeeecCCCCEEEEE
Q 026551 75 YEIIAFKVPSTE--IDK-STPKFFSHWDPDSKMFTLQ 108 (237)
Q Consensus 75 YEtIaFKIPn~E--IDk-~~~k~wt~WD~dtK~F~LQ 108 (237)
||.+.+..+..+ ... .+|.-++.|--+.+...++
T Consensus 90 yeq~~v~~~~~~d~~~~l~eg~~v~v~~~~g~~i~v~ 126 (131)
T COG0231 90 YEQYELPKDQIGDAAKFLKEGMEVEVLLYNGEPIAVE 126 (131)
T ss_pred ceEEEecchhhhhHHHhcCCCCEEEEEEECCEEEEEE
Confidence 898888876531 111 2344455555555554444
No 17
>PF09034 TRADD_N: TRADD, N-terminal domain; InterPro: IPR009095 TRADD is a signalling adaptor protein involved in tumour necrosis factor-receptor I (TNFR1)-associated apoptosis and cell survival. The decision between apoptosis and cell survival involves the interplay between two sequential signalling complexes. The plasma membrane-bound complex I is comprised of TNFR1, TRADD, the kinase RIP1, and TRAF2, which together mediate the activation of NF-kappaB. Subsequently, complex II is formed in the cytoplasm, where TRADD and RIP1 associate with FADD and caspase-8. If NF-kappaB is activated by complex I, then complex II will associate with the caspase-8 inhibitor FLIP(L) and the cell survives, while the failure to activate NF-kappaB leads to apoptosis []. The TRADD C-terminal death domain is responsible for its association with TNFR1, and with the death-domain proteins FADD and RIP1, which promote apoptosis. The TRADD N-terminal domain binds TRAF2 and promotes TRAF2 recruitment to TNFR1, thereby mediating the activation of NK-kappaB and JNK/AP1, which promote cell survival []. The N-terminal TRADD domain is composed of an alpha-beta sandwich, where the beta strands form an antiparallel beta-sheet.; GO: 0004871 signal transducer activity, 0006917 induction of apoptosis, 0043123 positive regulation of I-kappaB kinase/NF-kappaB cascade, 0005737 cytoplasm; PDB: 1F3V_A 1F2H_A.
Probab=44.57 E-value=8.4 Score=31.96 Aligned_cols=37 Identities=27% Similarity=0.639 Sum_probs=29.8
Q ss_pred CCCCceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecccc
Q 026551 12 GRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFE 55 (237)
Q Consensus 12 GRPgYKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSayE 55 (237)
|.-||.|-||.|.+-. |.+||.|-. ..+..||..+|-
T Consensus 5 ~~~g~~iLKiH~sdpq---LiVqlkF~~----~~~C~rFL~sYr 41 (111)
T PF09034_consen 5 SPDGYQILKIHDSDPQ---LIVQLKFCG----REPCRRFLRSYR 41 (111)
T ss_dssp -TTTEEEEEEEEETTC---EEEEEEEES----HHHHHHHHHHHH
T ss_pred CcchhheeeeecCCCe---eEEEEEEcC----chhHHHHHHHHh
Confidence 5679999999987664 899999944 678889998884
No 18
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=42.21 E-value=33 Score=28.37 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=49.3
Q ss_pred ceeEeCCCCceEEEeeCCCCCc-eeeEEEEEcCCccCCCCcceeeecccccccCC---CCCCccEEEE--------EecC
Q 026551 7 YAVKIGRPGYRVTKQFDPETKQ-RSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQP---FDKRYQYLMF--------AAEP 74 (237)
Q Consensus 7 k~vKIGRPgYKVTK~rDpeT~q-~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE~---pDk~~QYLv~--------AaEP 74 (237)
..+.|..=-|+|+++-....|+ .+-.+++..-+|..|.+=-+||-|+ |. +|. ..+.+|||-+ --|=
T Consensus 16 ~~i~~~g~p~~V~e~~~~kpGkhG~A~vr~k~knl~tG~~~e~~f~s~-~~-ve~~~ve~~~~qylY~dg~~~~fMd~et 93 (130)
T TIGR00037 16 GYVVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVSPST-SK-VEVPIVDRREYQVLAIMGGMVQLMDLDT 93 (130)
T ss_pred CEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEECCC-CE-EEEeEEEEEEEEEEEecCCEEEEEcCCC
Confidence 3444444458999998888888 6788899999998885555555443 22 332 3355555544 3567
Q ss_pred Cccceeeec
Q 026551 75 YEIIAFKVP 83 (237)
Q Consensus 75 YEtIaFKIP 83 (237)
||.+.++++
T Consensus 94 yeq~~i~~~ 102 (130)
T TIGR00037 94 YETDELPIP 102 (130)
T ss_pred cEEEEecCC
Confidence 888888776
No 19
>PF13584 BatD: Oxygen tolerance
Probab=38.35 E-value=68 Score=30.58 Aligned_cols=33 Identities=24% Similarity=0.635 Sum_probs=20.7
Q ss_pred CccEEEEEecCCccceeeecCcccccCCCcceeeecCCCCEEEE
Q 026551 64 RYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTL 107 (237)
Q Consensus 64 ~~QYLv~AaEPYEtIaFKIPn~EIDk~~~k~wt~WD~dtK~F~L 107 (237)
.+.|.+++-+.= .|.||.. .+.|||.++++|..
T Consensus 339 ~~~~~~ip~~~G---~~~lP~i--------~~~~fdp~~~~y~~ 371 (484)
T PF13584_consen 339 TFKYTLIPKKPG---DFTLPAI--------RFSWFDPQTGKYET 371 (484)
T ss_pred EEEEEEEeCCCC---eEEcCCe--------EEEEEcCCCCeEEE
Confidence 445666654322 4555553 34799999999874
No 20
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=35.02 E-value=9.9 Score=40.38 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=29.5
Q ss_pred eEeCCCCceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecccccc
Q 026551 9 VKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQR 57 (237)
Q Consensus 9 vKIGRPgYKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSayEQk 57 (237)
.+|+|||++|.+++ .+-|.|..-||. ||.+.||..
T Consensus 860 ~~~~~pGp~V~~~~-------n~Pf~v~l~dI~-------~FF~dY~~~ 894 (944)
T KOG4307|consen 860 ELIKSPGPRVLSCN-------NFPFDVTLEDIV-------EFFNDYEPD 894 (944)
T ss_pred HhcCCCCCeEEEec-------CCCccccHHHHH-------HHhcccccC
Confidence 38999999999998 478888888875 688999874
No 21
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=34.64 E-value=41 Score=28.73 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=44.2
Q ss_pred ceeeecccccccCCCCCCccEEEEEecCCccc------------eeeecCc----------------ccccCCCcceeee
Q 026551 47 RHRFMSSFEQRVQPFDKRYQYLMFAAEPYEII------------AFKVPST----------------EIDKSTPKFFSHW 98 (237)
Q Consensus 47 r~RfMSayEQkvE~pDk~~QYLv~AaEPYEtI------------aFKIPn~----------------EIDk~~~k~wt~W 98 (237)
+.|++|+-|- ++.-+.+-..+-+|..|-.+. ++.||+. -|+.-+|..|-||
T Consensus 2 kIRVVSsk~E-I~~Ln~nE~~VHlAFRPSN~Dif~Lv~~CP~lk~iqiP~SY~~t~Sksi~mfL~mqgI~LleGDVwGHR 80 (131)
T PF08004_consen 2 KIRVVSSKDE-IETLNPNEEIVHLAFRPSNKDIFSLVERCPNLKAIQIPPSYYKTLSKSIKMFLEMQGIELLEGDVWGHR 80 (131)
T ss_pred eeEEecCHHH-HhhcCCCceEEEEEecCcchHHHHHHHhCCCCeEEeCChHHHHHHhHHHHHHHHhcCceeecccccccc
Confidence 5799999887 888899999999999887654 5566662 2555568999999
Q ss_pred cCCCCEEE
Q 026551 99 DPDSKMFT 106 (237)
Q Consensus 99 D~dtK~F~ 106 (237)
---..-|.
T Consensus 81 KDinEYy~ 88 (131)
T PF08004_consen 81 KDINEYYE 88 (131)
T ss_pred CCCccccc
Confidence 76555443
No 22
>PHA03247 large tegument protein UL36; Provisional
Probab=34.62 E-value=7.7e+02 Score=30.86 Aligned_cols=8 Identities=0% Similarity=-0.230 Sum_probs=4.9
Q ss_pred ceeeecCC
Q 026551 94 FFSHWDPD 101 (237)
Q Consensus 94 ~wt~WD~d 101 (237)
-|-+|=+|
T Consensus 2535 ~w~~glEe 2542 (3151)
T PHA03247 2535 TWIRGLEE 2542 (3151)
T ss_pred hhhhhhhh
Confidence 46667665
No 23
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=34.18 E-value=2.1e+02 Score=28.74 Aligned_cols=72 Identities=43% Similarity=0.850 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCC-------CCCCCCCCCC
Q 026551 134 PPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPR---------PMPPGGAPPAPP-------PPPGGSGTMA 197 (237)
Q Consensus 134 pppppp~~~pp~~~~g~pp~~ppp~~~~~~ppppp~~~~~p~---------p~p~~g~p~~pp-------ppp~~~~~~~ 197 (237)
++++-+.+|++...+=..++.++.. ..-.+.++|+-.++ .-+++|+.++++ +||.. +.
T Consensus 254 ppppmpp~PpP~~t~~G~pP~pp~~---~qq~p~pp~~~ppRP~m~l~phl~gppPga~pPaph~NpaffpPP~~-~s-- 327 (498)
T KOG4849|consen 254 PPPPMPPAPPPQQTMLGNPPLPPQQ---IQQQPQPPMGQPPRPMMQLSPHLMGPPPGAGPPAPHNNPAFFPPPQL-GS-- 327 (498)
T ss_pred CCCCCCCCCCCccccCCCCCCCchh---hccCCCCCCCCCCCcccccCcccCCCCCCCCCCCcccCcccCCCCCc-Cc--
Q ss_pred CCCCCCCCCCCCCCCCC
Q 026551 198 NFTPGTQVGRPPTMPPP 214 (237)
Q Consensus 198 ~f~~~~~p~~~~~~~~~ 214 (237)
+|.+|--.+++.+|
T Consensus 328 ---~GppP~~~~~~~pP 341 (498)
T KOG4849|consen 328 ---MGPPPQMNTAMRPP 341 (498)
T ss_pred ---CCCCCCCccCCCCC
No 24
>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function.
Probab=31.27 E-value=56 Score=30.35 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=34.1
Q ss_pred CCCccEEEEEecCCccceeeecCcccccCCCcceeeecCCCCEEEEE
Q 026551 62 DKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQ 108 (237)
Q Consensus 62 Dk~~QYLv~AaEPYEtIaFKIPn~EIDk~~~k~wt~WD~dtK~F~LQ 108 (237)
-|.|+|..|..+-| -|++.| -.|+-...-++..||.++++++-+
T Consensus 39 ~K~w~y~~i~~~~~-~~~~av--~dl~y~~~~~v~~~d~~t~~~~~~ 82 (333)
T PF10974_consen 39 IKEWDYYGITSDDF-IIGLAV--ADLGYLGSAFVYLYDRKTGEFFEY 82 (333)
T ss_pred eeeEEEEEEECCCE-EEEEEE--EcCCceeEEEEEEEECCCCeEEEE
Confidence 47899999999886 566666 566666667899999999986533
No 25
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=31.22 E-value=55 Score=31.30 Aligned_cols=89 Identities=15% Similarity=0.320 Sum_probs=53.9
Q ss_pred EeCCC-CceEEEeeCCC-----CCceeeEEEEEcCCccCCCCcceeeecccccc-cCCCCCCccEEEE------------
Q 026551 10 KIGRP-GYRVTKQFDPE-----TKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQR-VQPFDKRYQYLMF------------ 70 (237)
Q Consensus 10 KIGRP-gYKVTK~rDpe-----T~q~gLlfqVdYPei~~g~~Pr~RfMSayEQk-vE~pDk~~QYLv~------------ 70 (237)
-+|+. +-+|..|-+.- .+=.-|.|+|+=+||--..=.-..|+-.+++. ++.-+...+|+.|
T Consensus 65 ~L~~~~~~~I~TVEHLmaAl~~lgIDN~~Iev~g~EiPImDGSa~~Fv~li~~aGi~~q~a~~~~irI~~pV~v~~gdk~ 144 (300)
T COG0774 65 TLGNDHGVRISTVEHLMAALAGLGIDNLIIEVDGPEIPIMDGSAAPFVELIDEAGIKEQNAKKKFIRIKKPVRVEDGDKW 144 (300)
T ss_pred eecCCCCcEEeeHHHHHHHHHhCCCccEEEEecCCcCcccCCchHHHHHHHHHhCchhhccccceEEEeccEEEecCCEE
Confidence 46666 77777776654 23345899999999822111223356666665 5556677777765
Q ss_pred -EecCCccceeeecCcccccCC---CcceeeecCC
Q 026551 71 -AAEPYEIIAFKVPSTEIDKST---PKFFSHWDPD 101 (237)
Q Consensus 71 -AaEPYEtIaFKIPn~EIDk~~---~k~wt~WD~d 101 (237)
+++||..-.|.+ +||.+. ++.|..|.-|
T Consensus 145 ~~~~P~dg~r~~~---~IdF~~p~Ig~~~q~~~~~ 176 (300)
T COG0774 145 AEFTPYDGFRLSY---TIDFDHPAIGRQWQSFEFD 176 (300)
T ss_pred EEEecCCCcEEEE---EEecCCcccCCcceeEEEe
Confidence 478886554433 666654 4656666544
No 26
>PHA03378 EBNA-3B; Provisional
Probab=31.08 E-value=5.2e+02 Score=28.23 Aligned_cols=8 Identities=50% Similarity=1.053 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 026551 127 ANGAVAPP 134 (237)
Q Consensus 127 ~~~~~~pp 134 (237)
|.++.-||
T Consensus 690 ap~~~~pP 697 (991)
T PHA03378 690 APGTMQPP 697 (991)
T ss_pred CccccCCC
Confidence 44444333
No 27
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=30.91 E-value=1e+02 Score=25.40 Aligned_cols=73 Identities=21% Similarity=0.109 Sum_probs=35.0
Q ss_pred eEeCCCCceEEEeeCCCCCc-eeeEEEEEcCCccCCCCcceeeecccccccC---CCCCCccEEEEE--------ecCCc
Q 026551 9 VKIGRPGYRVTKQFDPETKQ-RSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQ---PFDKRYQYLMFA--------AEPYE 76 (237)
Q Consensus 9 vKIGRPgYKVTK~rDpeT~q-~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE---~pDk~~QYLv~A--------aEPYE 76 (237)
+.|-.=-|+|.++-.-.+|+ .+-.+++.+-++..|.+=-.||-|+ |. +| ...+.+|||-+. -|=||
T Consensus 17 i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~s~-d~-~e~~~ve~~~~qylY~dg~~~~fMd~eTye 94 (129)
T PRK03999 17 VVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVD-AK-VEVPIIEKKTGQVLSIMGDVVQLMDLETYE 94 (129)
T ss_pred EEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEecCC-Cc-eeeeeEEeEEEEEEEecCCEEEEecCCCce
Confidence 34433346666655555555 4456666666665554322333332 21 12 122444444333 25677
Q ss_pred cceeeec
Q 026551 77 IIAFKVP 83 (237)
Q Consensus 77 tIaFKIP 83 (237)
.+.++.+
T Consensus 95 q~~i~~~ 101 (129)
T PRK03999 95 TFEIPIP 101 (129)
T ss_pred EEEecCC
Confidence 7765554
No 28
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=30.06 E-value=40 Score=28.17 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=14.0
Q ss_pred cccccCCCcceeeecCCCCEEEE
Q 026551 85 TEIDKSTPKFFSHWDPDSKMFTL 107 (237)
Q Consensus 85 ~EIDk~~~k~wt~WD~dtK~F~L 107 (237)
.+||.+.+-..-|||+|++..||
T Consensus 5 ~~lD~s~g~L~P~yD~dt~llyl 27 (136)
T PF08954_consen 5 QELDTSSGVLMPFYDEDTNLLYL 27 (136)
T ss_dssp EE----SS-EEEEE-TTT-EEEE
T ss_pred EeccCCCceeEeeEcCCCCEEEE
Confidence 57899999999999999998876
No 29
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=29.56 E-value=3.5 Score=37.95 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=31.8
Q ss_pred eeEEEEEcCCccCCCCcceeeecccccccCCCCCCccEEE
Q 026551 30 SLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLM 69 (237)
Q Consensus 30 gLlfqVdYPei~~g~~Pr~RfMSayEQkvE~pDk~~QYLv 69 (237)
.-||.|.|-.+....+--+||+|+.|||.|..+.-.|.-|
T Consensus 43 RNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv~l 82 (268)
T COG5040 43 RNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQVEL 82 (268)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHHHH
Confidence 3467788888766678899999999999998887776433
No 30
>PF11281 DUF3083: Protein of unknown function (DUF3083); InterPro: IPR021433 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.58 E-value=66 Score=30.99 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=25.0
Q ss_pred ccCCCcceeeecCCCCEEEEEEeeccCCCCC
Q 026551 88 DKSTPKFFSHWDPDSKMFTLQLYFKSKPVEG 118 (237)
Q Consensus 88 Dk~~~k~wt~WD~dtK~F~LQf~Fk~e~~~~ 118 (237)
+.++..+.+|||.|.-+=+|+|.|.....+.
T Consensus 243 ~~~~~q~~~~w~~~kLVet~~fvi~A~~~d~ 273 (316)
T PF11281_consen 243 NAEEPQFICHWDADKLVETVHFVIVAGKQDK 273 (316)
T ss_pred ccCCcceeeeeccceeeeeEEEEEEecCccc
Confidence 3445679999999999999999998766543
No 31
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=25.39 E-value=1.3e+02 Score=26.04 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=44.7
Q ss_pred ceeEeCCCCceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecccccccCC---CCCCccEEEE--------EecCC
Q 026551 7 YAVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQP---FDKRYQYLMF--------AAEPY 75 (237)
Q Consensus 7 k~vKIGRPgYKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE~---pDk~~QYLv~--------AaEPY 75 (237)
..+.+-.=-|+|.++.+-..|+.+-.+++.+-++..|.+=-+||-|+- ++|. ..+.+|||-+ --|=|
T Consensus 10 ~~I~~~g~~~~V~~~~~~kpGkg~A~~rvk~knL~tG~~~e~~f~~~~--kve~~~~e~~~~q~ly~dgd~~~fMD~ety 87 (184)
T TIGR00038 10 LVIELDGEPYVVLEFEHVKPGKGQAFVRVKLKNLLTGKVLEKTFRSGE--KVEKADVEEREMQYLYKDGDSYVFMDTETY 87 (184)
T ss_pred CEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeCCCC--EEEcccEEeEEEEEEEECCCEEEEeCCCCc
Confidence 344554445889998888888888899999999988854334443332 2332 2344444433 35678
Q ss_pred cccee
Q 026551 76 EIIAF 80 (237)
Q Consensus 76 EtIaF 80 (237)
|+|.+
T Consensus 88 eq~~i 92 (184)
T TIGR00038 88 EQIEL 92 (184)
T ss_pred cceEc
Confidence 86654
No 32
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=20.97 E-value=60 Score=23.86 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=18.3
Q ss_pred cccCCCcceeeecCCCCEEEEEEe
Q 026551 87 IDKSTPKFFSHWDPDSKMFTLQLY 110 (237)
Q Consensus 87 IDk~~~k~wt~WD~dtK~F~LQf~ 110 (237)
|..++-.+-.+||.+|+++.|..+
T Consensus 28 l~~eDP~l~~~~d~et~e~~l~g~ 51 (75)
T PF14492_consen 28 LSEEDPSLRVERDEETGELILSGM 51 (75)
T ss_dssp HHHH-TTSEEEEETTTSEEEEEES
T ss_pred HHhcCCeEEEEEcchhceEEEEEC
Confidence 444445778899999999999876
No 33
>PF09149 DUF1935: Domain of unknown function (DUF1935); InterPro: IPR015232 This entry represents a conserved region found in various bacterial and eukaryotic hypothetical proteins, as well as in the cysteine protease calpain. Its function has not, as yet, been defined. ; PDB: 1R75_A 2FE0_A.
Probab=20.73 E-value=84 Score=25.20 Aligned_cols=21 Identities=10% Similarity=0.346 Sum_probs=11.0
Q ss_pred CCcceeeecCCCCEEEEEEeec
Q 026551 91 TPKFFSHWDPDSKMFTLQLYFK 112 (237)
Q Consensus 91 ~~k~wt~WD~dtK~F~LQf~Fk 112 (237)
+++.|.+.| ||++|.+++.+.
T Consensus 30 ~~~~WaFYN-DT~~y~m~V~v~ 50 (104)
T PF09149_consen 30 KEGRWAFYN-DTKDYEMHVTVT 50 (104)
T ss_dssp TTTEEEEEE---SSEEEEEEEE
T ss_pred CCCEEEEEe-CCCcEEEEEEEE
Confidence 445676665 677766555443
No 34
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=20.18 E-value=12 Score=34.78 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=35.0
Q ss_pred EEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecccccccCCCCCCcc
Q 026551 18 VTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQ 66 (237)
Q Consensus 18 VTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE~pDk~~Q 66 (237)
|++.-..-|....=|+.|.|-.+....+--+||+|+.||+-|.....-|
T Consensus 28 v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~ 76 (247)
T KOG0841|consen 28 VAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEK 76 (247)
T ss_pred hcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchH
Confidence 3343333444456678899988876678899999999999887654444
Done!