Query 026551
Match_columns 237
No_of_seqs 157 out of 199
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgw_C PRE-mRNA-splicing facto 100.0 3.6E-52 1.2E-56 363.6 8.4 105 8-113 95-223 (231)
2 2k8q_A Protein SHQ1; beta-sand 61.4 30 0.001 28.1 7.4 65 30-110 14-79 (134)
3 3hks_A EIF-5A-2, eukaryotic tr 52.7 8.4 0.00029 32.2 2.8 80 6-87 37-130 (167)
4 3eud_A Protein SHQ1; CS domain 50.9 61 0.0021 25.8 7.4 79 10-110 14-93 (115)
5 3ach_A Beta-1,4-endoglucanase; 49.3 45 0.0015 28.9 6.8 99 15-120 47-169 (203)
6 1ddw_A GLGF-domain protein hom 39.9 92 0.0031 24.3 6.9 71 5-112 21-93 (120)
7 2eif_A IF-5A, protein (eukaryo 36.6 1.3E+02 0.0044 23.7 7.3 77 6-83 19-106 (136)
8 1i2h_A PSD-ZIP45(homer-1C/VESL 35.5 1E+02 0.0034 25.8 6.8 71 5-112 26-98 (168)
9 1iz6_A Initiation factor 5A; S 35.3 60 0.0021 25.8 5.2 84 5-89 14-108 (138)
10 1x6o_A Eukaryotic initiation f 33.9 25 0.00086 29.4 2.8 78 6-85 39-135 (174)
11 3cpf_A Eukaryotic translation 30.2 42 0.0014 26.7 3.4 79 7-87 16-106 (138)
12 1f3v_A Tumor necrosis factor r 28.1 17 0.00058 31.1 0.8 37 12-55 55-91 (179)
13 1yby_A Translation elongation 26.8 1E+02 0.0035 26.5 5.6 77 6-83 40-126 (215)
14 3kyd_D Small ubiquitin-related 24.4 47 0.0016 26.0 2.7 37 16-60 40-76 (115)
15 2kca_A Bacteriophage SPP1 comp 24.3 1.3E+02 0.0046 21.4 5.1 9 29-37 56-64 (109)
16 1eer_B Epobp, erythropoietin r 22.8 61 0.0021 25.7 3.2 38 64-101 179-216 (227)
17 1xiw_B T-cell surface glycopro 22.0 38 0.0013 24.5 1.6 24 90-113 46-71 (79)
18 1uww_A Endoglucanase; carbohyd 21.5 1.9E+02 0.0066 24.8 6.1 51 15-70 37-91 (191)
19 3uf8_A Ubiquitin-like protein 20.8 52 0.0018 27.4 2.5 47 16-72 21-67 (209)
No 1
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-52 Score=363.63 Aligned_cols=105 Identities=25% Similarity=0.376 Sum_probs=96.7
Q ss_pred eeEeCCCCceEEEeeCCCCCceeeEEEEEcCC-c---------cCCCCcceeeecccccccCCCCCCccEEEEEecCCcc
Q 026551 8 AVKIGRPGYRVTKQFDPETKQRSLLFQIEYPE-I---------EDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEI 77 (237)
Q Consensus 8 ~vKIGRPgYKVTK~rDpeT~q~gLlfqVdYPe-i---------~~g~~Pr~RfMSayEQkvE~pDk~~QYLv~AaEPYEt 77 (237)
...|||||||||||||++|+|+||||||+|++ | +++++|||||||+|||++|.+ ++|||||||||||||
T Consensus 95 ~~~IGRPGYKVTKVRDPETgQ~GLLFQVdYPEeIk~~~~~~~~~egi~PrhRIMSAyEQrVE~P-Kd~QYLVIAAEPYET 173 (231)
T 4dgw_C 95 XXXXXXXXXXXXXXXXXXXGSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQ-KGKKFLVIAYEPFEN 173 (231)
T ss_dssp SCCCCCCCCBCCCEECCBCCBCCEEEEEECCCSSSTTSCCSCSSTTCCCEEEEEETTCCSSCCC-CCCEEEEEECSSSCC
T ss_pred ccccccccccccccccccCCCeeEEEEEECChhhhhcccccccCCCCCcCEEEECHHHhcccCC-CCCEEEEEEeCCCCC
Confidence 45899999999999999999999999999999 6 788999999999999999998 999999999999999
Q ss_pred ceeeecCcccccCC--------------CcceeeecCCCCEEEEEEeecc
Q 026551 78 IAFKVPSTEIDKST--------------PKFFSHWDPDSKMFTLQLYFKS 113 (237)
Q Consensus 78 IaFKIPn~EIDk~~--------------~k~wt~WD~dtK~F~LQf~Fk~ 113 (237)
|||||||+|||+.+ |+||||||+|+|+|+||||||.
T Consensus 174 IAFKIPNrEIDk~e~~~~~~~~~svDElgKfwTyWD~DsK~FyLQffFK~ 223 (231)
T 4dgw_C 174 IAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQ 223 (231)
T ss_dssp BCCEECSSCSSCCSCCSCCCCCCSSCHHHHHTEEEETTTTEEEEC-----
T ss_pred ceeEcCChhhccccccccccccccccccCCEEEEecCCCCEEEEEEEEee
Confidence 99999999999988 8899999999999999999993
No 2
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=61.40 E-value=30 Score=28.09 Aligned_cols=65 Identities=20% Similarity=0.469 Sum_probs=47.0
Q ss_pred eeEEEEEcCCccCCCCcceee-ecccccccCCCCCCccEEEEEecCCccceeeecCcccccCCCcceeeecCCCCEEEEE
Q 026551 30 SLLFQIEYPEIEDLSKPRHRF-MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQ 108 (237)
Q Consensus 30 gLlfqVdYPei~~g~~Pr~Rf-MSayEQkvE~pDk~~QYLv~AaEPYEtIaFKIPn~EIDk~~~k~wt~WD~dtK~F~LQ 108 (237)
-|.|.|..|.+ || +|..|..|+. .-+.|-+.|| =..+.+|..-+|.+.++ ..||.|+..|+|.
T Consensus 14 ~viV~Ik~P~~--------~~~~sdiei~v~~-----~~F~F~~~PY-yLRL~LP~~V~e~~~~k--A~YD~d~~~~~Vt 77 (134)
T 2k8q_A 14 FIFLKIFISNI--------RFSAVGLEIIIQE-----NMIIFHLSPY-YLRLRFPHELIDDERST--AQYDSKDECINVK 77 (134)
T ss_dssp EEEEEEECCSS--------CCCSSSCCCEECS-----SSEEECSSSS-CEEECCSSCEECCSSCE--EEEETTTTEEEEE
T ss_pred EEEEEEEcCcc--------ccCccccEEEEeC-----CEEEEecCCe-EEEecCCCeeecCCCcc--eeEeccCCEEEEE
Confidence 68888888776 45 5677765542 2478889999 45677777666655444 6889999999999
Q ss_pred Ee
Q 026551 109 LY 110 (237)
Q Consensus 109 f~ 110 (237)
|-
T Consensus 78 Lp 79 (134)
T 2k8q_A 78 VA 79 (134)
T ss_dssp EE
T ss_pred Ee
Confidence 85
No 3
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=52.70 E-value=8.4 Score=32.22 Aligned_cols=80 Identities=14% Similarity=0.042 Sum_probs=56.8
Q ss_pred cceeEeCCCCceEEEeeCCCCCc-eeeEEEEEcCCccCCCCcceeeecccccccC---CCCCCccEEEE-E--------e
Q 026551 6 AYAVKIGRPGYRVTKQFDPETKQ-RSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQ---PFDKRYQYLMF-A--------A 72 (237)
Q Consensus 6 kk~vKIGRPgYKVTK~rDpeT~q-~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE---~pDk~~QYLv~-A--------a 72 (237)
..+|.|..=-|+|+++-...+|+ -+-.+++..-+|..|.+=-.+|-|+- ++| ...+.+|||-+ . -
T Consensus 37 G~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~--kve~~~ver~~~QyLY~d~d~~~~fMD~ 114 (167)
T 3hks_A 37 GGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSH--NCDVPHVNRVDYQLIDITEDGFVSLLTD 114 (167)
T ss_dssp TSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTS--EEEEECCEEEEEEEEEECTTSBEEEECT
T ss_pred CCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCC--EEEeeeEEEEEEEEEEECCCCEEEEEcC
Confidence 34556655559999998888998 56788899988888755555555552 233 23467777777 2 2
Q ss_pred cCCccceeeecCc-cc
Q 026551 73 EPYEIIAFKVPST-EI 87 (237)
Q Consensus 73 EPYEtIaFKIPn~-EI 87 (237)
|=||.+.++||.. +|
T Consensus 115 etyeQ~~l~lp~~~~l 130 (167)
T 3hks_A 115 SGGTKDDLKLPTDDGL 130 (167)
T ss_dssp TSCEECCCBCCSCHHH
T ss_pred CCceEEEEecCchHHH
Confidence 7899999999987 44
No 4
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=50.92 E-value=61 Score=25.81 Aligned_cols=79 Identities=20% Similarity=0.439 Sum_probs=54.4
Q ss_pred EeCCCCceEEEeeCCCCCceeeEEEEEcCCccCCCCcceee-ecccccccCCCCCCccEEEEEecCCccceeeecCcccc
Q 026551 10 KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRF-MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEID 88 (237)
Q Consensus 10 KIGRPgYKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~Rf-MSayEQkvE~pDk~~QYLv~AaEPYEtIaFKIPn~EID 88 (237)
|.=.|.|+|+--- .-|.|.|..|-+ || .+..|-.|+ -.-++|-|.|| =..+.+|.+-+|
T Consensus 14 ~~iTP~F~itQDd------efv~I~I~~p~i--------r~~a~~~ei~vd-----~~~F~F~~~PY-yLRL~lP~~vve 73 (115)
T 3eud_A 14 KMITPRFSITQDE------EFIFLKIFISNI--------RFSAVGLEIIIQ-----ENMIIFHLSPY-YLRLRFPHELID 73 (115)
T ss_dssp CCBCCCEEEEECS------SEEEEEEECCSC--------CCCSSSCEEEEE-----TTEEEEEETTE-EEEEECSSCEEC
T ss_pred CEeCCcEEEEECC------CEEEEEEEcCce--------ecccCccEEEEe-----CCEEEEecCCe-EEEEecCcceec
Confidence 4556777776321 268888888776 33 245565443 23588999999 457888887666
Q ss_pred cCCCcceeeecCCCCEEEEEEe
Q 026551 89 KSTPKFFSHWDPDSKMFTLQLY 110 (237)
Q Consensus 89 k~~~k~wt~WD~dtK~F~LQf~ 110 (237)
.+.+ -..||.|+..|+|.|-
T Consensus 74 d~~~--~A~YD~d~g~~~v~lp 93 (115)
T 3eud_A 74 DERS--TAQYDSKDECINVKVA 93 (115)
T ss_dssp STTC--EEEEETTTTEEEEEEE
T ss_pred CCCc--ceEEeCCCcEEEEEEc
Confidence 5443 3589999999999885
No 5
>3ach_A Beta-1,4-endoglucanase; beta-jellyroll, cellulose-binding domain, hydrolase; HET: BGC; 1.40A {Clostridium josui} PDB: 3acf_A* 3acg_A* 3aci_A*
Probab=49.33 E-value=45 Score=28.94 Aligned_cols=99 Identities=19% Similarity=0.347 Sum_probs=51.6
Q ss_pred CceEEEeeCCCCCceeeEEEEEcCCccC--C--CCcceeeecccccccCCCCCCccEEEEE--------ecCCc--ccee
Q 026551 15 GYRVTKQFDPETKQRSLLFQIEYPEIED--L--SKPRHRFMSSFEQRVQPFDKRYQYLMFA--------AEPYE--IIAF 80 (237)
Q Consensus 15 gYKVTK~rDpeT~q~gLlfqVdYPei~~--g--~~Pr~RfMSayEQkvE~pDk~~QYLv~A--------aEPYE--tIaF 80 (237)
|.|-.-.....+|...|.++|.|||.+. + .-||.+|-. ++.---+.+||.|- .|--- +++|
T Consensus 47 GVk~aLTIeeANgS~AlSwe~~YPEvKpsD~WAsApRl~l~~-----~~~tRg~n~YlaFDfYl~P~rAskG~i~I~laf 121 (203)
T 3ach_A 47 GVQSALTIKDANESKAISWEVKYPEVKPVDGWASAPRIMLGN-----VNTTRGNNKYLTFDFYLKPTQASKGSLTISLAF 121 (203)
T ss_dssp SCCSCCEEEEETTEEEEEEEEECCSSCCSSTTTTSCEEEETT-----CCBCCTTCSEEEEEEEEEEEECCSSEEEEEEEE
T ss_pred CccceeEEeecCCcceeEEEEeCCcccCCcccccCceeEEec-----ccceeccCcEEEEEEEECccccCCceEEEEEEe
Confidence 3333333334567889999999999843 3 566664432 22233455676553 22211 2233
Q ss_pred eecCc----------ccccCCCcceeeecCCCCEEEEEEeeccCCCCCCC
Q 026551 81 KVPST----------EIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNK 120 (237)
Q Consensus 81 KIPn~----------EIDk~~~k~wt~WD~dtK~F~LQf~Fk~e~~~~~~ 120 (237)
.=|+. +||..+=. +-=--+...|..|+.|..++-+..|
T Consensus 122 ~PP~lGyWAqa~~~f~IdL~~L~--~a~~t~DgLYh~~v~~dl~ki~~~K 169 (203)
T 3ach_A 122 APPSLGFWAQATGDVNIPLSSLS--KMKKTTDGLYHFQVKYDLDKINDGK 169 (203)
T ss_dssp ECGGGTTCEEBSCCEEEEGGGGG--GSCCCTTSCEEEEEEEETTCBGGGC
T ss_pred cCCCCccceeCcceecccHHHhh--hcccCCCccEEEEEEEehhhccCCc
Confidence 33332 23332100 0002234679999999887765544
No 6
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=39.94 E-value=92 Score=24.29 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=45.2
Q ss_pred CcceeEeCCCCceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecccccccCCCCCCccEEEEEecCCccceeeecC
Q 026551 5 GAYAVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPS 84 (237)
Q Consensus 5 ~kk~vKIGRPgYKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE~pDk~~QYLv~AaEPYEtIaFKIPn 84 (237)
|++|++.|.-.-+|..++|...+ .|||++- . -+-+|+-|+=|..+.+.
T Consensus 21 k~~W~p~g~~~~~V~~~~d~~~~-------------------~yRIv~~-~---------~~~vv~n~~i~~~l~y~--- 68 (120)
T 1ddw_A 21 KKNWVPTSKHAVTVSYFYDSTRN-------------------VYRIISL-D---------GSKAIINSTITPNMTFT--- 68 (120)
T ss_dssp SCSEEESCSSCEEEEEEEETTTT-------------------EEEEEEE-E---------TTEEEEEEECCTTCCCE---
T ss_pred CCceEeCCCCceEEEEEEcCCCC-------------------EEEEEEc-c---------CCEEEEeCEecCCcEEe---
Confidence 46888888777777777774433 2788871 1 13477778777666553
Q ss_pred cccccCCCcceeeecCCC--CEEEEEEeec
Q 026551 85 TEIDKSTPKFFSHWDPDS--KMFTLQLYFK 112 (237)
Q Consensus 85 ~EIDk~~~k~wt~WD~dt--K~F~LQf~Fk 112 (237)
+.. -++.+|..+. .+|=|.|--+
T Consensus 69 ----~a~-p~FhqW~d~~~~~~~GLnF~s~ 93 (120)
T 1ddw_A 69 ----KTS-QKFGQWADSRANTVYGLGFSSE 93 (120)
T ss_dssp ----ECS-SSEEEEEETTTTEEEEEECSSH
T ss_pred ----eCC-ccccEEEcCCCcEEEEeccCCH
Confidence 233 3456666666 7888877643
No 7
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=36.61 E-value=1.3e+02 Score=23.74 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=49.3
Q ss_pred cceeEeCCCCceEEEeeCCCCCc-eeeEEEEEcCCccCCCCcceeeecc--cccccCCCCCCccEEEE--------EecC
Q 026551 6 AYAVKIGRPGYRVTKQFDPETKQ-RSLLFQIEYPEIEDLSKPRHRFMSS--FEQRVQPFDKRYQYLMF--------AAEP 74 (237)
Q Consensus 6 kk~vKIGRPgYKVTK~rDpeT~q-~gLlfqVdYPei~~g~~Pr~RfMSa--yEQkvE~pDk~~QYLv~--------AaEP 74 (237)
...+.|..=-|+|+++..-.+|+ -+-.+++.+-++..|.+=-.+|-|+ +|. ..-..+.+|||-+ --|=
T Consensus 19 G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~-~~ve~~~~qyly~dg~~~~fMD~et 97 (136)
T 2eif_A 19 GQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEV-PIIDRRKGQVLAIMGDMVQIMDLQT 97 (136)
T ss_dssp TSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEE-ECEEEEEEEEEEEETTEEEEEETTT
T ss_pred CCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEecc-ccEeeeEEEEEEecCCEEEEEeCCC
Confidence 34455544468888888888887 5566788888887775544455552 222 2234555666544 3677
Q ss_pred Cccceeeec
Q 026551 75 YEIIAFKVP 83 (237)
Q Consensus 75 YEtIaFKIP 83 (237)
||.+.+..+
T Consensus 98 yeq~~l~~~ 106 (136)
T 2eif_A 98 YETLELPIP 106 (136)
T ss_dssp CCEEEEECC
T ss_pred ceEEEecCC
Confidence 888887776
No 8
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=35.55 E-value=1e+02 Score=25.79 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=43.6
Q ss_pred CcceeEeCCCCceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecccccccCCCCCCccEEEEEecCCccceeeecC
Q 026551 5 GAYAVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPS 84 (237)
Q Consensus 5 ~kk~vKIGRPgYKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE~pDk~~QYLv~AaEPYEtIaFKIPn 84 (237)
|++|++.|.-.-+|.-++|... -.|||++-- -+-+|+=|+=|..+.+.-
T Consensus 26 k~~WvP~g~~~~~V~i~~d~~r-------------------nsyRIvg~~----------d~kvvinc~I~~~l~Y~k-- 74 (168)
T 1i2h_A 26 KKNWVPTSKHAVTVSYFYDSTR-------------------NVYRIISLD----------GSKAIINSTITPNMTFTK-- 74 (168)
T ss_dssp SCCSEESCSSCEEEEEEEETTT-------------------TEEEEEEEE----------TTEEEEEEECCTTCCEEE--
T ss_pred CCceeecCCCCeEEEEEEcCCC-------------------CEEEEEEcc----------CCEEEEecEecCCcEEee--
Confidence 4577777766556555555332 237888721 134788888887776542
Q ss_pred cccccCCCcceeeecCCC--CEEEEEEeec
Q 026551 85 TEIDKSTPKFFSHWDPDS--KMFTLQLYFK 112 (237)
Q Consensus 85 ~EIDk~~~k~wt~WD~dt--K~F~LQf~Fk 112 (237)
... ++.+|--+. .+|=|.|.-+
T Consensus 75 -----asp-~FHqW~d~~~~~v~GLnF~Se 98 (168)
T 1i2h_A 75 -----TSQ-KFGQWADSRANTVYGLGFSSE 98 (168)
T ss_dssp -----EET-TEEEEEETTTTEEEEEEESSH
T ss_pred -----CCc-ccceeecCCCcEEEEeccCCH
Confidence 233 445666566 8898888744
No 9
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=35.26 E-value=60 Score=25.78 Aligned_cols=84 Identities=17% Similarity=0.033 Sum_probs=56.2
Q ss_pred CcceeEeCCCCceEEEeeCCCCCc-eeeEEEEEcCCccCCCCcceeeecc--cccccCCCCCCccEEEE--------Eec
Q 026551 5 GAYAVKIGRPGYRVTKQFDPETKQ-RSLLFQIEYPEIEDLSKPRHRFMSS--FEQRVQPFDKRYQYLMF--------AAE 73 (237)
Q Consensus 5 ~kk~vKIGRPgYKVTK~rDpeT~q-~gLlfqVdYPei~~g~~Pr~RfMSa--yEQkvE~pDk~~QYLv~--------AaE 73 (237)
+...+.|..=-|+|+++-.-.+|+ -+-.+++.+-+|..|.+=-.+|-|+ +|. ..-..+.+|||-+ --|
T Consensus 14 kG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~-~~ve~~~~qylY~dg~~~~fMD~e 92 (138)
T 1iz6_A 14 PGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDV-PIIDKKTAQVIAITPDTVQIMDME 92 (138)
T ss_dssp TTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEE-ECCEEEEEEEEEECSSEEEEECTT
T ss_pred CCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEee-ceEEEEEEEEEEeCCCEEEEEeCC
Confidence 334556655569999999989988 6666799998888875554455543 222 2234556666554 367
Q ss_pred CCccceeeecCccccc
Q 026551 74 PYEIIAFKVPSTEIDK 89 (237)
Q Consensus 74 PYEtIaFKIPn~EIDk 89 (237)
=||.+.++++...|..
T Consensus 93 tyeq~~l~~~~~~lgd 108 (138)
T 1iz6_A 93 TYETFEVPIDTGVADE 108 (138)
T ss_dssp TCCEEEEEHHHHBCGG
T ss_pred CCceEEeeCCHHHHHH
Confidence 7999999888766543
No 10
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=33.87 E-value=25 Score=29.44 Aligned_cols=78 Identities=15% Similarity=0.045 Sum_probs=49.8
Q ss_pred cceeEeCCCCceEEEeeCCCCCce-eeEEEEEcCCccCCCCcceeeecccccccC---CCCCCccEEEEE----------
Q 026551 6 AYAVKIGRPGYRVTKQFDPETKQR-SLLFQIEYPEIEDLSKPRHRFMSSFEQRVQ---PFDKRYQYLMFA---------- 71 (237)
Q Consensus 6 kk~vKIGRPgYKVTK~rDpeT~q~-gLlfqVdYPei~~g~~Pr~RfMSayEQkvE---~pDk~~QYLv~A---------- 71 (237)
...|.|..=-|+|+++-...+|+. +-.+++..-+|..|.+=-.+|-|+ | ++| ...+.+|||-+.
T Consensus 39 G~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~-~-kve~~~Ver~~~QyLY~dgd~~~~~~g~ 116 (174)
T 1x6o_A 39 GGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPST-H-NVEVPFVKTYTYSVLDIQANEDPSLPAH 116 (174)
T ss_dssp TCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETT-S-EEEEECCEEEEEEEEEEECCSSTTSCCE
T ss_pred CCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCC-C-EEEeeEEEEEEEEEEEecCCcccccccE
Confidence 344555444589999988889986 667788888887775555555554 2 233 234566766664
Q ss_pred -----ecCCccceeeecCc
Q 026551 72 -----AEPYEIIAFKVPST 85 (237)
Q Consensus 72 -----aEPYEtIaFKIPn~ 85 (237)
-|=||.+.++++..
T Consensus 117 ~~fMD~etyeq~~l~~p~~ 135 (174)
T 1x6o_A 117 LSLMDDEGESREDLDMPPD 135 (174)
T ss_dssp EEEECTTSCEECCCBCCSC
T ss_pred EEEEcCCCceEEEeeCCch
Confidence 45788888888765
No 11
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=30.21 E-value=42 Score=26.69 Aligned_cols=79 Identities=9% Similarity=0.017 Sum_probs=52.4
Q ss_pred ceeEeCCCCceEEEeeCCCCCce-eeEEEEEcCCccCCCCcceeeecccccccC---CCCCCccEEEEE--------ecC
Q 026551 7 YAVKIGRPGYRVTKQFDPETKQR-SLLFQIEYPEIEDLSKPRHRFMSSFEQRVQ---PFDKRYQYLMFA--------AEP 74 (237)
Q Consensus 7 k~vKIGRPgYKVTK~rDpeT~q~-gLlfqVdYPei~~g~~Pr~RfMSayEQkvE---~pDk~~QYLv~A--------aEP 74 (237)
..+.|..=-|+|+++-...+|+. +-.+++..-+|..|.+=-.+|-|+ | ++| -..+.+|||-+. -|=
T Consensus 16 ~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~-~-kve~~~v~~~~~qyly~dg~~~~fMD~et 93 (138)
T 3cpf_A 16 GFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPST-H-NMDVPNIKRNDFQLIGIQDGYLSLLQDSG 93 (138)
T ss_dssp SEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETT-S-EEEEECCEEEEEEEEEEETTEEEEECTTS
T ss_pred CEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCC-C-EEEeeEEEEEEEEEEEecCCEEEEEcCCC
Confidence 44555444589999988889886 778899998888775544555443 2 233 345677776553 678
Q ss_pred CccceeeecCccc
Q 026551 75 YEIIAFKVPSTEI 87 (237)
Q Consensus 75 YEtIaFKIPn~EI 87 (237)
||.+.++|+...|
T Consensus 94 yeq~~l~l~~~~l 106 (138)
T 3cpf_A 94 EVREDLRLPEGDL 106 (138)
T ss_dssp CEECCSBCCSHHH
T ss_pred CeEeeecCCHHHH
Confidence 9999999987554
No 12
>1f3v_A Tumor necrosis factor receptor type 1 associated death domain protein; A-B sandwich, apoptosis; 2.00A {Homo sapiens} SCOP: d.58.22.1 PDB: 1f2h_A
Probab=28.13 E-value=17 Score=31.11 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=30.4
Q ss_pred CCCCceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecccc
Q 026551 12 GRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFE 55 (237)
Q Consensus 12 GRPgYKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSayE 55 (237)
|+=+|.|-||.|.+-. |.+||.| -+..+..||..+|-
T Consensus 55 ~~d~~qiLKiH~sdpq---LiVqlkF----cg~~~C~RFL~sYr 91 (179)
T 1f3v_A 55 SPDVLQMLKIHRSDPQ---LIVQLRF----CGRQPCGRFLRAYR 91 (179)
T ss_dssp CTTTEEEEEEEECSSS---EEEEEEE----ESHHHHHHHHHHHH
T ss_pred CcchhhheeeecCCCe---eEEEEEE----cCcHHHHHHHHHhh
Confidence 4568999999997654 8899999 45689999998884
No 13
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=26.77 E-value=1e+02 Score=26.47 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=50.5
Q ss_pred cceeEeCCCCceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecc--cccccCCCCCCccEEEEE--------ecCC
Q 026551 6 AYAVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSS--FEQRVQPFDKRYQYLMFA--------AEPY 75 (237)
Q Consensus 6 kk~vKIGRPgYKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSa--yEQkvE~pDk~~QYLv~A--------aEPY 75 (237)
...+.|..=-|+|+++-.-..|+-+-.+++.+-+|..|.+=-.||-|+ +|. +.-..+++|||-+. -|=|
T Consensus 40 G~~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~-a~verr~~QylY~Dgd~y~FMD~ETy 118 (215)
T 1yby_A 40 GVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPK-AHIERKDMQYLYNDGDLYYFMDTETF 118 (215)
T ss_dssp TCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECB-CCCEEEEEEEEEEETTEEEEECTTTC
T ss_pred CCEEEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEECCCCEEec-ceEEEEEEEEEEeCCCEEEEccCCCC
Confidence 345566655689999988889988888899999988875544555544 222 22345677777664 4678
Q ss_pred ccceeeec
Q 026551 76 EIIAFKVP 83 (237)
Q Consensus 76 EtIaFKIP 83 (237)
|.|.+...
T Consensus 119 EQi~l~~~ 126 (215)
T 1yby_A 119 EQLPLGKD 126 (215)
T ss_dssp CEEEEEHH
T ss_pred eeEEecHH
Confidence 87766543
No 14
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=24.44 E-value=47 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=25.3
Q ss_pred ceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecccccccCC
Q 026551 16 YRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQP 60 (237)
Q Consensus 16 YKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE~ 60 (237)
+=..||++.+.. -+.|.|.- ..++.++|.+|..+...
T Consensus 40 ~I~LKV~~qdg~--ev~fkIk~------tt~L~KLm~aY~er~Gl 76 (115)
T 3kyd_D 40 YIKLKVIGQDSS--EIHFKVKM------TTHLKKLKESYCQRQGV 76 (115)
T ss_dssp EEEEEEECTTSC--EEEEEEET------TSCTHHHHHHHHHHHTC
T ss_pred eEEEEEEcCCCC--EEEEEEcc------CChHHHHHHHHHHHhCC
Confidence 334577765433 36676655 57889999999998653
No 15
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1}
Probab=24.31 E-value=1.3e+02 Score=21.41 Aligned_cols=9 Identities=11% Similarity=0.039 Sum_probs=4.1
Q ss_pred eeeEEEEEc
Q 026551 29 RSLLFQIEY 37 (237)
Q Consensus 29 ~gLlfqVdY 37 (237)
..+.|.|-|
T Consensus 56 ~t~~~~iR~ 64 (109)
T 2kca_A 56 IGYNIYTPY 64 (109)
T ss_dssp CEEEEEEES
T ss_pred EEEEEEEEc
Confidence 344444444
No 16
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Probab=22.77 E-value=61 Score=25.72 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=22.6
Q ss_pred CccEEEEEecCCccceeeecCcccccCCCcceeeecCC
Q 026551 64 RYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD 101 (237)
Q Consensus 64 ~~QYLv~AaEPYEtIaFKIPn~EIDk~~~k~wt~WD~d 101 (237)
.-.++|...++...-.|+|=++........+|+.|-..
T Consensus 179 ~~~~~l~~L~p~t~Y~vqVRa~~~~~~~~g~wS~WS~~ 216 (227)
T 1eer_B 179 RTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEP 216 (227)
T ss_dssp CCEEEECCCCSSCEEEEEEEEEECTTTCCEECCCCCCC
T ss_pred ceEEEEcccCCCCeEEEEEEEeECCCCCCCcCCCCCCC
Confidence 44566666777777777775552111224678888654
No 17
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=22.00 E-value=38 Score=24.47 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=13.4
Q ss_pred CCCcceee--ecCCCCEEEEEEeecc
Q 026551 90 STPKFFSH--WDPDSKMFTLQLYFKS 113 (237)
Q Consensus 90 ~~~k~wt~--WD~dtK~F~LQf~Fk~ 113 (237)
..|.|++. .|...+..+||++|++
T Consensus 46 ~sG~Y~C~~~~~~~~~~s~LqV~yR~ 71 (79)
T 1xiw_B 46 PRGIYRCNGTDIYKDKESTVQVHYRM 71 (79)
T ss_dssp CEEEEEEC--------CEEEEEEEEC
T ss_pred CCeEEEecCCCCCCcccEEEEEEhhh
Confidence 44667764 3333346789999986
No 18
>1uww_A Endoglucanase; carbohydrate binding module, glycosidase, lectin, cellulose, binding, CBM, hydrolase; HET: MSE; 1.4A {Bacillus akibai} SCOP: b.18.1.23
Probab=21.49 E-value=1.9e+02 Score=24.81 Aligned_cols=51 Identities=20% Similarity=0.442 Sum_probs=30.7
Q ss_pred CceEEEeeCCCCCceeeEEEEEcCCccC--C--CCcceeeecccccccCCCCCCccEEEE
Q 026551 15 GYRVTKQFDPETKQRSLLFQIEYPEIED--L--SKPRHRFMSSFEQRVQPFDKRYQYLMF 70 (237)
Q Consensus 15 gYKVTK~rDpeT~q~gLlfqVdYPei~~--g--~~Pr~RfMSayEQkvE~pDk~~QYLv~ 70 (237)
|.|-.-.....+|...|..+|.|||.+. + .-||.+|-. ++.---+.+||.|
T Consensus 37 GVktaLTIeeANgS~AlSWe~~YPEvKpsD~WAsAPRl~l~~-----~~~tRg~n~YlaF 91 (191)
T 1uww_A 37 GVKTALTIEEANGSNALSWEFGYPEVKPSDNWATAPRLDFWK-----SDLVRGENDYVTF 91 (191)
T ss_dssp SCCCCCEEEEETTEEEEEEEEECCSSCCSSTTTTCCEEEEEC-----TTCCCTTCCEEEE
T ss_pred CccceEEEEecCCcceeEEEEeCCcccCCcccccCceeEEec-----cccccccCceEEE
Confidence 4443333444577889999999999843 2 567665532 2223344566655
No 19
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=20.81 E-value=52 Score=27.37 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=30.6
Q ss_pred ceEEEeeCCCCCceeeEEEEEcCCccCCCCcceeeecccccccCCCCCCccEEEEEe
Q 026551 16 YRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAA 72 (237)
Q Consensus 16 YKVTK~rDpeT~q~gLlfqVdYPei~~g~~Pr~RfMSayEQkvE~pDk~~QYLv~Aa 72 (237)
|=..|++| ++ ..+.|.|.. ..++.|+|.+|+++... +.+.+-|+|..
T Consensus 21 ~i~ikv~~--~~-~~v~~~i~~------~~~l~kl~~~y~~~~g~-~~~~~~f~fdG 67 (209)
T 3uf8_A 21 HINLKVSD--GS-SEIFFKIKK------TTPLRRLMEAFAKRQGK-EMDSLRFLYDG 67 (209)
T ss_dssp EEEEEEEC--SS-CEEEEEEET------TSCTHHHHHHHHHHHTC-CGGGCEEEETT
T ss_pred cEEEEEEc--CC-CEEEEEEee------CCHHHHHHHHHHHhhCC-ChheEEEEECC
Confidence 33467776 33 357777765 57888999999998654 33444455553
Done!