Your job contains 1 sequence.
>026552
MGSEAALPKWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL
LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI
FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE
SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026552
(237 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2040189 - symbol:AT2G25100 species:3702 "Arabi... 809 1.9e-83 2
GENEDB_PFALCIPARUM|PFF1150w - symbol:PFF1150w "ribonuclea... 489 1.1e-46 1
UNIPROTKB|C6KT75 - symbol:PFF1150w "Ribonuclease" species... 489 1.1e-46 1
MGI|MGI:1916974 - symbol:Rnaseh2a "ribonuclease H2, large... 472 7.1e-45 1
FB|FBgn0031252 - symbol:CG13690 species:7227 "Drosophila ... 467 2.4e-44 1
RGD|1307248 - symbol:Rnaseh2a "ribonuclease H2, subunit A... 467 2.4e-44 1
UNIPROTKB|Q5U209 - symbol:Rnaseh2a "Ribonuclease H2 subun... 467 2.4e-44 1
ZFIN|ZDB-GENE-040426-976 - symbol:rnaseh2a "ribonuclease ... 463 6.4e-44 1
UNIPROTKB|O75792 - symbol:RNASEH2A "Ribonuclease H2 subun... 460 1.3e-43 1
UNIPROTKB|F1SDX8 - symbol:RNASEH2A "Ribonuclease" species... 457 2.8e-43 1
UNIPROTKB|E2RQK5 - symbol:RNASEH2A "Ribonuclease" species... 451 1.2e-42 1
UNIPROTKB|Q2TBT5 - symbol:RNASEH2A "Ribonuclease H2 subun... 447 3.2e-42 1
DICTYBASE|DDB_G0292584 - symbol:rnaseh2A "ribonuclease H2... 385 1.2e-35 1
WB|WBGene00004383 - symbol:rnh-2 species:6239 "Caenorhabd... 372 2.8e-34 1
SGD|S000005016 - symbol:RNH201 "Ribonuclease H2 catalytic... 344 2.6e-31 1
CGD|CAL0003240 - symbol:RNH35 species:5476 "Candida albic... 332 4.9e-30 1
POMBASE|SPAC4G9.02 - symbol:rnh201 "ribonuclease H2 compl... 323 4.4e-29 1
UNIPROTKB|G4MNH9 - symbol:MGG_06959 "Ribonuclease" specie... 305 3.5e-27 1
ASPGD|ASPL0000033104 - symbol:AN5114 species:162425 "Emer... 298 1.9e-26 1
DICTYBASE|DDB_G0277705 - symbol:DDB_G0277705 species:4468... 128 9.3e-06 1
>TAIR|locus:2040189 [details] [associations]
symbol:AT2G25100 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=ISS] [GO:0004523 "ribonuclease H activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016070 "RNA metabolic process" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523 EMBL:AK117633
EMBL:BT005597 EMBL:AY087961 IPI:IPI00547479 PIR:C84644
RefSeq:NP_565584.1 UniGene:At.39066 ProteinModelPortal:Q9SEZ6
SMR:Q9SEZ6 STRING:Q9SEZ6 PaxDb:Q9SEZ6 PRIDE:Q9SEZ6
EnsemblPlants:AT2G25100.1 GeneID:817048 KEGG:ath:AT2G25100
TAIR:At2g25100 eggNOG:COG0164 HOGENOM:HOG000100290
InParanoid:Q9SEZ6 KO:K10743 OMA:WRTAQTI PhylomeDB:Q9SEZ6
ProtClustDB:CLSN2688398 Genevestigator:Q9SEZ6 GermOnline:AT2G25100
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 Uniprot:Q9SEZ6
Length = 296
Score = 809 (289.8 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 153/222 (68%), Positives = 178/222 (80%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+LLTE YLDTVGD +KY
Sbjct: 76 GWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKY 135
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+ EET E+++RNFGSG
Sbjct: 136 RIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSG 195
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGK 195
YPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K VEV WE+DE +E+ + S K
Sbjct: 196 YPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADE-NEESGNGSSSK 254
Query: 196 RQLKLSDIGFXXXXXXXXXXXXXXXXXCKFLEARKLEQLTHF 237
RQ KLS GF CKFL+ARK++QLT F
Sbjct: 255 RQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 296
Score = 46 (21.3 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1 MGSEAALPKWASNPFGWAVD 20
M SE P+WAS P +D
Sbjct: 1 MESECLTPEWASQPCLMGID 20
>GENEDB_PFALCIPARUM|PFF1150w [details] [associations]
symbol:PFF1150w "ribonuclease H1 large subunit,
putative" species:5833 "Plasmodium falciparum" [GO:0006401 "RNA
catabolic process" evidence=ISS] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
Pfam:PF01351 GO:GO:0003723 GO:GO:0006401 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 EMBL:AL844505 HOGENOM:HOG000100290
KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567
PANTHER:PTHR10954 TIGRFAMs:TIGR00729 RefSeq:XP_966221.1
ProteinModelPortal:C6KT75 EnsemblProtists:PFF1150w:mRNA
GeneID:3885875 KEGG:pfa:PFF1150w EuPathDB:PlasmoDB:PF3D7_0623900
ProtClustDB:CLSZ2514453 Uniprot:C6KT75
Length = 288
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 97/175 (55%), Positives = 122/175 (69%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
PFGW V I+ P+++SAKML K K NLNEISHD+AI +I V+N G LTEV++DTVG A
Sbjct: 77 PFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKAS 136
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD L+ W +EE N+ FG
Sbjct: 137 VYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYEEPIINIDNGFG 196
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL-WESDEMDED 187
SGYPGDP TK +L ++ +FGFPS+VRFSW T + +++ E + W DE D
Sbjct: 197 SGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLENLGEKIEWYDDEEGND 251
>UNIPROTKB|C6KT75 [details] [associations]
symbol:PFF1150w "Ribonuclease" species:36329 "Plasmodium
falciparum 3D7" [GO:0006401 "RNA catabolic process" evidence=ISS]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0006401
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 EMBL:AL844505
HOGENOM:HOG000100290 KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
RefSeq:XP_966221.1 ProteinModelPortal:C6KT75
EnsemblProtists:PFF1150w:mRNA GeneID:3885875 KEGG:pfa:PFF1150w
EuPathDB:PlasmoDB:PF3D7_0623900 ProtClustDB:CLSZ2514453
Uniprot:C6KT75
Length = 288
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 97/175 (55%), Positives = 122/175 (69%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
PFGW V I+ P+++SAKML K K NLNEISHD+AI +I V+N G LTEV++DTVG A
Sbjct: 77 PFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKAS 136
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD L+ W +EE N+ FG
Sbjct: 137 VYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYEEPIINIDNGFG 196
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL-WESDEMDED 187
SGYPGDP TK +L ++ +FGFPS+VRFSW T + +++ E + W DE D
Sbjct: 197 SGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLENLGEKIEWYDDEEGND 251
>MGI|MGI:1916974 [details] [associations]
symbol:Rnaseh2a "ribonuclease H2, large subunit"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=ISO] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
evidence=ISO;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 MGI:MGI:1916974 GO:GO:0005634
GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 GeneTree:ENSGT00390000010768
HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM GO:GO:0032299 EMBL:AK010292
EMBL:AK146518 EMBL:BC038158 IPI:IPI00229787 RefSeq:NP_081463.1
UniGene:Mm.182470 PDB:3KIO PDB:3P5J PDBsum:3KIO PDBsum:3P5J
ProteinModelPortal:Q9CWY8 SMR:Q9CWY8 STRING:Q9CWY8
PhosphoSite:Q9CWY8 PaxDb:Q9CWY8 PRIDE:Q9CWY8 DNASU:69724
Ensembl:ENSMUST00000109736 Ensembl:ENSMUST00000109738
Ensembl:ENSMUST00000147812 GeneID:69724 KEGG:mmu:69724
UCSC:uc009mok.1 InParanoid:Q9CWY8 ChiTaRS:RNASEH2A
EvolutionaryTrace:Q9CWY8 NextBio:330190 Bgee:Q9CWY8
CleanEx:MM_RNASEH2A Genevestigator:Q9CWY8
GermOnline:ENSMUSG00000052926 Uniprot:Q9CWY8
Length = 301
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 89/181 (49%), Positives = 120/181 (66%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRRSG 194
YP DP+TKAWL H +FGFP VRFSW T + K+ +V+WE E +ED R G
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED--PERPG 268
Query: 195 K 195
K
Sbjct: 269 K 269
>FB|FBgn0031252 [details] [associations]
symbol:CG13690 species:7227 "Drosophila melanogaster"
[GO:0004523 "ribonuclease H activity" evidence=ISS;NAS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 EMBL:AE014134
GO:GO:0046872 GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0016070 GO:GO:0004523 eggNOG:COG0164 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 OMA:IAEVYVD
EMBL:BT023255 RefSeq:NP_608521.1 UniGene:Dm.30792
ProteinModelPortal:Q9VPP5 SMR:Q9VPP5 STRING:Q9VPP5 PaxDb:Q9VPP5
PRIDE:Q9VPP5 EnsemblMetazoa:FBtr0078090 GeneID:33213
KEGG:dme:Dmel_CG13690 UCSC:CG13690-RA FlyBase:FBgn0031252
InParanoid:Q9VPP5 OrthoDB:EOG4PC87Q PhylomeDB:Q9VPP5
GenomeRNAi:33213 NextBio:782466 Bgee:Q9VPP5 GermOnline:CG13690
Uniprot:Q9VPP5
Length = 347
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 99/229 (43%), Positives = 135/229 (58%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFXXXXXXXXXXXXXXXXXCKFLEARKLEQLTHF 237
+ +G + K C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF--------FKGTTKSGEIIREECRFFKQRHLESVMEF 347
>RGD|1307248 [details] [associations]
symbol:Rnaseh2a "ribonuclease H2, subunit A" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006401 "RNA catabolic
process" evidence=ISO;ISS] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
evidence=ISO;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 RGD:1307248 GO:GO:0005634
GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM
GO:GO:0032299 EMBL:BC086345 EMBL:BC086539 IPI:IPI00360500
RefSeq:NP_001013252.1 UniGene:Rn.3693 ProteinModelPortal:Q5U209
STRING:Q5U209 GeneID:364974 KEGG:rno:364974 NextBio:686384
ArrayExpress:Q5U209 Genevestigator:Q5U209 Uniprot:Q5U209
Length = 301
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 86/173 (49%), Positives = 116/173 (67%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG E Y
Sbjct: 91 GWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + ++GSG
Sbjct: 151 QARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 187
YP DP+TKAWL H +FGFP VRFSW T + K+ V WE +ED
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTWEDSAAEED 263
>UNIPROTKB|Q5U209 [details] [associations]
symbol:Rnaseh2a "Ribonuclease H2 subunit A" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 RGD:1307248 GO:GO:0005634
GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM
GO:GO:0032299 EMBL:BC086345 EMBL:BC086539 IPI:IPI00360500
RefSeq:NP_001013252.1 UniGene:Rn.3693 ProteinModelPortal:Q5U209
STRING:Q5U209 GeneID:364974 KEGG:rno:364974 NextBio:686384
ArrayExpress:Q5U209 Genevestigator:Q5U209 Uniprot:Q5U209
Length = 301
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 86/173 (49%), Positives = 116/173 (67%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG E Y
Sbjct: 91 GWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + ++GSG
Sbjct: 151 QARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 187
YP DP+TKAWL H +FGFP VRFSW T + K+ V WE +ED
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTWEDSAAEED 263
>ZFIN|ZDB-GENE-040426-976 [details] [associations]
symbol:rnaseh2a "ribonuclease H2, subunit A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
Pfam:PF01351 ZFIN:ZDB-GENE-040426-976 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523 Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
HOVERGEN:HBG023585 EMBL:BC046061 IPI:IPI00493246 UniGene:Dr.14704
HSSP:Q57599 ProteinModelPortal:Q7ZUZ9 STRING:Q7ZUZ9 PRIDE:Q7ZUZ9
InParanoid:Q7ZUZ9 ArrayExpress:Q7ZUZ9 Bgee:Q7ZUZ9 Uniprot:Q7ZUZ9
Length = 307
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 87/178 (48%), Positives = 118/178 (66%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AEKY
Sbjct: 91 GWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F E ++ ++GSG
Sbjct: 151 QDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRR 192
YP DP+TK+WL + +FG+P VRFSW T + V V W+ DE D + ++ R
Sbjct: 211 YPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDDDEEDGEKAAAR 268
>UNIPROTKB|O75792 [details] [associations]
symbol:RNASEH2A "Ribonuclease H2 subunit A" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0032299 "ribonuclease H2 complex" evidence=IDA]
[GO:0004523 "ribonuclease H activity" evidence=IDA] [GO:0006260
"DNA replication" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=IDA] [GO:0004540 "ribonuclease activity" evidence=TAS]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
EMBL:CH471106 GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290
KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567
PANTHER:PTHR10954 TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585
OrthoDB:EOG4PNXHM GO:GO:0032299 EMBL:Z97029 EMBL:AK315327
EMBL:BC011748 IPI:IPI00290192 RefSeq:NP_006388.2 UniGene:Hs.532851
PDB:3P56 PDB:3PUF PDBsum:3P56 PDBsum:3PUF ProteinModelPortal:O75792
SMR:O75792 STRING:O75792 PhosphoSite:O75792 PaxDb:O75792
PRIDE:O75792 DNASU:10535 Ensembl:ENST00000221486 GeneID:10535
KEGG:hsa:10535 UCSC:uc002mvg.1 GeneCards:GC19P012918
HGNC:HGNC:18518 HPA:HPA042692 MIM:606034 MIM:610333
neXtProt:NX_O75792 Orphanet:51 PharmGKB:PA38565 InParanoid:O75792
PhylomeDB:O75792 EvolutionaryTrace:O75792 GenomeRNAi:10535
NextBio:39969 Bgee:O75792 CleanEx:HS_RNASEH2A Genevestigator:O75792
GermOnline:ENSG00000104889 Uniprot:O75792
Length = 299
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 90/191 (47%), Positives = 122/191 (63%)
Query: 4 EAALPKWASNPF-GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT 62
E K F GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T
Sbjct: 77 ERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVT 136
Query: 63 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 122
+V++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F
Sbjct: 137 QVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFV 196
Query: 123 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWES 181
E +++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE
Sbjct: 197 EKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE- 255
Query: 182 DEMDEDVSSRR 192
D E+ R
Sbjct: 256 DSASENQEGLR 266
>UNIPROTKB|F1SDX8 [details] [associations]
symbol:RNASEH2A "Ribonuclease" species:9823 "Sus scrofa"
[GO:0032299 "ribonuclease H2 complex" evidence=IEA] [GO:0006401
"RNA catabolic process" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0006401
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 KO:K10743 OMA:WRTAQTI
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 GeneTree:ENSGT00390000010768
GO:GO:0032299 EMBL:CU914382 RefSeq:NP_001231373.1 UniGene:Ssc.19088
Ensembl:ENSSSCT00000015011 GeneID:100523170 KEGG:ssc:100523170
Uniprot:F1SDX8
Length = 301
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 85/178 (47%), Positives = 116/178 (65%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ +R W F E +++ ++GSG
Sbjct: 151 QERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
YP DP+TKAWL H +FGFP VRFSW T S K+ +V WE + + R+
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILEKEAEDVTWEDSQTGDQEGLRK 268
>UNIPROTKB|E2RQK5 [details] [associations]
symbol:RNASEH2A "Ribonuclease" species:9615 "Canis lupus
familiaris" [GO:0032299 "ribonuclease H2 complex" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=IEA] [GO:0004523
"ribonuclease H activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723
GO:GO:0006401 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 KO:K10743
OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 GO:GO:0032299
EMBL:AAEX03012405 RefSeq:XP_003639769.1 ProteinModelPortal:E2RQK5
Ensembl:ENSCAFT00000027175 GeneID:100856442 KEGG:cfa:100856442
NextBio:20858991 Uniprot:E2RQK5
Length = 299
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 85/173 (49%), Positives = 115/173 (66%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKSWHFVEKLQDLDADYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDED 187
YP DP+TKAWL H +FGFP VRFSW T S + E V+WE D + D
Sbjct: 211 YPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVIWE-DSLTGD 262
>UNIPROTKB|Q2TBT5 [details] [associations]
symbol:RNASEH2A "Ribonuclease H2 subunit A" species:9913
"Bos taurus" [GO:0032299 "ribonuclease H2 complex" evidence=ISS]
[GO:0004523 "ribonuclease H activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
Pfam:PF01351 GO:GO:0005634 GO:GO:0046872 GO:GO:0003723
GO:GO:0006401 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164
HOGENOM:HOG000100290 KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
EMBL:BC109682 IPI:IPI00706063 RefSeq:NP_001033623.1
UniGene:Bt.44367 ProteinModelPortal:Q2TBT5 STRING:Q2TBT5
PRIDE:Q2TBT5 Ensembl:ENSBTAT00000012731 GeneID:512830
KEGG:bta:512830 CTD:10535 GeneTree:ENSGT00390000010768
HOVERGEN:HBG023585 InParanoid:Q2TBT5 OrthoDB:EOG4PNXHM
NextBio:20870572 GO:GO:0032299 Uniprot:Q2TBT5
Length = 299
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 84/169 (49%), Positives = 112/169 (66%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDE 183
YP DP+TKAWL H +FGFP VRFSW T S + E V WE E
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILESEAEDVKWEDSE 259
>DICTYBASE|DDB_G0292584 [details] [associations]
symbol:rnaseh2A "ribonuclease H2 subunit A"
species:44689 "Dictyostelium discoideum" [GO:0016070 "RNA metabolic
process" evidence=IEA;IC] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0032299
"ribonuclease H2 complex" evidence=ISS] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
dictyBase:DDB_G0292584 Pfam:PF01351 GenomeReviews:CM000155_GR
EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0016070 GO:GO:0004523 eggNOG:COG0164 KO:K10743 OMA:WRTAQTI
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GO:GO:0032299 RefSeq:XP_629507.1 HSSP:O59351
ProteinModelPortal:Q54D13 STRING:Q54D13 EnsemblProtists:DDB0266383
GeneID:8628758 KEGG:ddi:DDB_G0292584 Uniprot:Q54D13
Length = 289
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 83/190 (43%), Positives = 118/190 (62%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 76
+ D+I LS KML K I+LN ISH+SAIGLI VL G+ + E+YLDTVG +KYQ
Sbjct: 84 YETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVGPPDKYQ 143
Query: 77 AKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-----ETAENMHR 130
L + FP I K +VSKKADSLYP+VS ASI AKV RD + F+ + E +
Sbjct: 144 LMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQDEQLST 203
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI---VEVLWESDEMDED 187
+FGSGYP DP +K WL ++ +FG+P+ +RFSW T + + V+ + E+D++ +
Sbjct: 204 DFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTTETAMRGACFGVDWVLENDKLKQH 263
Query: 188 VSSRRSGKRQ 197
++ K++
Sbjct: 264 FQENQNDKKR 273
>WB|WBGene00004383 [details] [associations]
symbol:rnh-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 GO:GO:0046872
GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 EMBL:AF181619
EMBL:Z66524 RefSeq:NP_495796.1 UniGene:Cel.19550
ProteinModelPortal:Q9U6P6 SMR:Q9U6P6 STRING:Q9U6P6 PaxDb:Q9U6P6
EnsemblMetazoa:T13H5.7 GeneID:266861 KEGG:cel:CELE_T13H5.7
UCSC:T13H5.7 CTD:266861 WormBase:T13H5.7 InParanoid:Q9U6P6
OMA:IAEVYVD NextBio:953296 Uniprot:Q9U6P6
Length = 297
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 81/178 (45%), Positives = 108/178 (60%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 76
+A+ + P +S ML + K +LNE+SH++AI LI L + + E+ +DTVG YQ
Sbjct: 88 YALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTVGPKATYQ 147
Query: 77 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENMHRNFGSG 135
AKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F E+ + +GSG
Sbjct: 148 AKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIKVPDAGYGSG 207
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
YPGDP TK +L +FGF SLVR SW T ++ K V WE DE + S+R
Sbjct: 208 YPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTIVEKRCVPGSWEDDEEEGKSQSKR 265
>SGD|S000005016 [details] [associations]
symbol:RNH201 "Ribonuclease H2 catalytic subunit"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0032299
"ribonuclease H2 complex" evidence=IDA] [GO:0004523 "ribonuclease H
activity" evidence=IEA;ISS;IMP;IDA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer"
evidence=IGI;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
SGD:S000005016 Pfam:PF01351 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 EMBL:BK006947 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0004523 EMBL:X86470 GO:GO:0043137 eggNOG:COG0164
HOGENOM:HOG000100290 KO:K10743 Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
GeneTree:ENSGT00390000010768 GO:GO:0032299 OMA:IAEVYVD
OrthoDB:EOG4HMNKD EMBL:Z71348 PIR:S53908 RefSeq:NP_014327.1
ProteinModelPortal:P53942 SMR:P53942 DIP:DIP-4565N IntAct:P53942
MINT:MINT-532801 STRING:P53942 PaxDb:P53942 PeptideAtlas:P53942
EnsemblFungi:YNL072W GeneID:855652 KEGG:sce:YNL072W CYGD:YNL072w
NextBio:979902 Genevestigator:P53942 GermOnline:YNL072W
Uniprot:P53942
Length = 307
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 81/193 (41%), Positives = 111/193 (57%)
Query: 16 GWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
G+A I P ++S +K NLNE +HD + LI V+ + L+ VY+DTVG
Sbjct: 101 GYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKLSHVYVDTVGPP 160
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E +
Sbjct: 161 ASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDI-----LVESLKRDPDEIL 215
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVLWESDEMDED 187
GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D + + WE MD
Sbjct: 216 GSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKNSIPIKWEEQYMDSR 275
Query: 188 VSSRRSGKRQLKL 200
++ + K QL+L
Sbjct: 276 KNAAQKTK-QLQL 287
>CGD|CAL0003240 [details] [associations]
symbol:RNH35 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 CGD:CAL0003240 Pfam:PF01351 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523
EMBL:AACQ01000020 EMBL:AACQ01000016 eggNOG:COG0164 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 RefSeq:XP_720885.1 RefSeq:XP_721398.1
RefSeq:XP_888785.1 ProteinModelPortal:Q5AGX6 STRING:Q5AGX6
GeneID:3636987 GeneID:3637501 GeneID:3704096 KEGG:cal:CaO19.13915
KEGG:cal:CaO19.6562 KEGG:cal:CaO19_6562 Uniprot:Q5AGX6
Length = 431
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 72/173 (41%), Positives = 103/173 (59%)
Query: 16 GWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GWA + R++S+ ML K NLNE +HD+ I LI +VL G+ ++++++DTVG
Sbjct: 221 GWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQVLAKGVKISKIFVDTVGP 280
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-R 130
YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++ + E + +
Sbjct: 281 PVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--FYNENLPLLQGQ 338
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEVLWE 180
GSGYP DP T WL + +FG+ +RFSW T + EV++E
Sbjct: 339 KLGSGYPSDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAEVVYE 391
>POMBASE|SPAC4G9.02 [details] [associations]
symbol:rnh201 "ribonuclease H2 complex subunit Rnh201
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006261
"DNA-dependent DNA replication" evidence=ISO] [GO:0032299
"ribonuclease H2 complex" evidence=ISO] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IC] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351
PomBase:SPAC4G9.02 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0004523 GO:GO:0043137 eggNOG:COG0164
HOGENOM:HOG000100290 KO:K10743 Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
GO:GO:0032299 OMA:IAEVYVD PIR:T38861 RefSeq:NP_593684.1
ProteinModelPortal:Q10236 STRING:Q10236 EnsemblFungi:SPAC4G9.02.1
GeneID:2541542 KEGG:spo:SPAC4G9.02 OrthoDB:EOG4HMNKD
NextBio:20802639 Uniprot:Q10236
Length = 326
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 79/177 (44%), Positives = 102/177 (57%)
Query: 16 GWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+ I REL+A ML +NK NLN +HD+ I LI +V GI +TE+Y+DTVG
Sbjct: 128 GWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPIS 187
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RNFG 133
YQ KL FP K V+KKADSL+P+VS ASI AKVTRD L E E++ N+G
Sbjct: 188 YQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL-----ECARESIRTENWG 242
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCT------SHFKDIVEVLWESDE 183
SGY D T WL + IFG+ +VR+SW T S + +E+ W D+
Sbjct: 243 SGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTAKDLLELPSKSQSSIEIDWHEDD 299
>UNIPROTKB|G4MNH9 [details] [associations]
symbol:MGG_06959 "Ribonuclease" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 EMBL:CM001231 GO:GO:0004523 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 RefSeq:XP_003709705.1 EnsemblFungi:MGG_06959T0
GeneID:2685132 KEGG:mgr:MGG_06959 Uniprot:G4MNH9
Length = 355
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 71/172 (41%), Positives = 98/172 (56%)
Query: 16 GWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
GWA+ + R++ A M+ NLN + D+ + LI V++ G+ + E+Y+DTVG
Sbjct: 129 GWAISSLSARDIGAGMMRPATSAAYNLNAQALDATVSLIQGVMDRGVNVAEIYVDTVGPP 188
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----RGWIFE----ET 124
YQ KL + FP+ K VSKKADSLYP VS AS+ AKVTRD L + + E E
Sbjct: 189 AAYQKKLERFFPTAKVTVSKKADSLYPCVSAASVCAKVTRDAALEVLYKNVLSEIAKAEG 248
Query: 125 AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
E+ +GSGYP D WL + H +FG+ + RFSWGT KD++E
Sbjct: 249 GEDEEIGWGSGYPSDARCVGWLKRNMHPVFGWGTECRFSWGTV----KDMLE 296
>ASPGD|ASPL0000033104 [details] [associations]
symbol:AN5114 species:162425 "Emericella nidulans"
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 EMBL:BN001305
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523
EMBL:AACD01000088 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 OMA:IAEVYVD OrthoDB:EOG4HMNKD RefSeq:XP_662718.1
ProteinModelPortal:Q5B2W6 STRING:Q5B2W6
EnsemblFungi:CADANIAT00003098 GeneID:2871406 KEGG:ani:AN5114.2
Uniprot:Q5B2W6
Length = 339
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 71/175 (40%), Positives = 100/175 (57%)
Query: 16 GWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDA 72
GWA ++ R++S+ M+ NLN + D+ I LI V+ L + EVY+DT+G+
Sbjct: 131 GWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELIRGVVEERKLNVREVYIDTIGNP 190
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN--MHR 130
YQ KL FPS++ V+KKADSLYP VS AS+VAKVTRD L +E EN +
Sbjct: 191 ASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRDVAL-DVCYEVLKENGGVGD 249
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWESDE 183
+GSGYP D + W+ + +FG+ + RFSWGT K +V W ++E
Sbjct: 250 GWGSGYPSDSKCVGWMRTNMDPVFGWGNECRFSWGTAKEMLEVKGGEKVDWPAEE 304
>DICTYBASE|DDB_G0277705 [details] [associations]
symbol:DDB_G0277705 species:44689 "Dictyostelium
discoideum" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
dictyBase:DDB_G0277705 Pfam:PF01351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 EMBL:AAFI02000021 GO:GO:0004523
eggNOG:COG0164 Gene3D:1.10.10.460 InterPro:IPR024567
PANTHER:PTHR10954 TIGRFAMs:TIGR00729 KO:K03470 RefSeq:XP_642511.1
ProteinModelPortal:Q54ZA4 EnsemblProtists:DDB0218016 GeneID:8621159
KEGG:ddi:DDB_G0277705 InParanoid:Q54ZA4 Uniprot:Q54ZA4
Length = 507
Score = 128 (50.1 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 42/143 (29%), Positives = 70/143 (48%)
Query: 25 RELSAKMLNKNKINL-NEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRF 83
REL +N+ + NL ++ DS I + + I++ + ++T +KY F
Sbjct: 210 RELHT--MNQIETNLFYQLIKDS-INNLPKNQQCKIIIDSIEMNT----QKYSQPFKMEF 262
Query: 84 PSIKFVV--SKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPE 141
P + + KAD + V ASI+AKV RDR W+ ++ N GSGYP DP
Sbjct: 263 PPPLYQIYCETKADHKFISVGAASIIAKVERDR----WM-KQLETNTSHIIGSGYPSDPL 317
Query: 142 TKAWLTDHKHIIFGFPSLVRFSW 164
T +++ + + +P+ +R SW
Sbjct: 318 TISYVNNFFKKYYVYPNSMRKSW 340
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 237 220 0.00094 112 3 11 22 0.38 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 608 (65 KB)
Total size of DFA: 186 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.05u 0.14s 18.19t Elapsed: 00:00:01
Total cpu time: 18.05u 0.14s 18.19t Elapsed: 00:00:01
Start: Fri May 10 19:17:09 2013 End: Fri May 10 19:17:10 2013