BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026552
(237 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225464178|ref|XP_002269817.1| PREDICTED: ribonuclease H2 subunit A isoform 1 [Vitis vinifera]
gi|296086584|emb|CBI32219.3| unnamed protein product [Vitis vinifera]
Length = 297
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/227 (79%), Positives = 204/227 (89%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A GWAVD+IDP ELSAKML KNKINLNEISHDSAIGLITRVLN+G+LLTEVY+DTVG
Sbjct: 71 ADESIGWAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVLLTEVYVDTVG 130
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
DAEKY+ KLS+RFP++KFVV+KKADSLYPVVSGASIVAKVTRDR LR W+ ETAENMHR
Sbjct: 131 DAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLVETAENMHR 190
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
NFGSGYPGDP TK+WL HKH +FGFP+LVRFSWGTCT++ KDIVEVLWE+D+++ED S+
Sbjct: 191 NFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIVEVLWEADKVEEDGST 250
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
R+GKRQLKLS +GF SKR+SEEIESSGKGRCKF +ARKLEQLT F
Sbjct: 251 NRNGKRQLKLSSVGFIESKRKSEEIESSGKGRCKFFQARKLEQLTQF 297
>gi|255549406|ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis]
gi|223545084|gb|EEF46595.1| ribonuclease hi large subunit, putative [Ricinus communis]
Length = 299
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/227 (78%), Positives = 200/227 (88%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A+ GWAVD+IDPRELSAKML KNKINLNEISH+SAIGLITRVLN G+LLT+VYLDTVG
Sbjct: 73 ANESIGWAVDVIDPRELSAKMLQKNKINLNEISHESAIGLITRVLNEGVLLTQVYLDTVG 132
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
DAEKY+ KLS+RFPSIKFVV+KKADSLYPVVSGASIVAKVTRDR LR W+ EETAE + R
Sbjct: 133 DAEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVLEETAEGISR 192
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
NFGSGYPGDPETKAWL HKH +FGFP+LVRFSWGTC S++KD VEVLWESD+MDED S
Sbjct: 193 NFGSGYPGDPETKAWLKQHKHQVFGFPTLVRFSWGTCNSYYKDAVEVLWESDKMDEDDSV 252
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+GKRQLKLS G + K +SEEIESSGKGRCKF ++RKLEQL+HF
Sbjct: 253 NSNGKRQLKLSSFGITIPKTKSEEIESSGKGRCKFFQSRKLEQLSHF 299
>gi|449468774|ref|XP_004152096.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
gi|449529756|ref|XP_004171864.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
Length = 297
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/227 (76%), Positives = 206/227 (90%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A+ GWAVD+IDPRELS+KMLNK KINLNEISHDSA+GL+T+VL++G+LLTEVY+DTVG
Sbjct: 71 ANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLSMGVLLTEVYVDTVG 130
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
D EKY+ KLS++FP+IKFVV+KKADSLYPVVSGASIVAKVTRDR LR W EETAENMHR
Sbjct: 131 DPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHR 190
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
NFGSGYPGDP TK WL DHKH +FGFP+LVRFSWGTCTS+FKD+VEV WESD++DED ++
Sbjct: 191 NFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVSWESDKVDEDGAT 250
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
SGK+QL+LS++G ++SKR+SEEIESSGKGRCKF +ARKLEQL+ F
Sbjct: 251 GGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQARKLEQLSRF 297
>gi|356536350|ref|XP_003536702.1| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Glycine max]
Length = 297
Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 175/228 (76%), Positives = 200/228 (87%), Gaps = 3/228 (1%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
++ GW VD+IDPRELSAKML KNKINLNEISH SA+GLI RVL +G+LLTEVY+DTVGD
Sbjct: 71 NDSIGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVLLTEVYIDTVGD 130
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
A KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAKVTRDR LR W+ +ETAENM RN
Sbjct: 131 AGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMQRN 190
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDED--VS 189
FGSGYPGDP+TK+WL DHKH IFGFPSLVRFSWGTC S+FKD EVLWESD +DED S
Sbjct: 191 FGSGYPGDPQTKSWLEDHKHHIFGFPSLVRFSWGTCNSYFKDAAEVLWESDNLDEDGGGS 250
Query: 190 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ ++GKRQLKLS++GF++SK RSEEIESSGKGRC+F +ARKLE LT+F
Sbjct: 251 NNKNGKRQLKLSNVGFTTSK-RSEEIESSGKGRCRFFQARKLEHLTYF 297
>gi|224097610|ref|XP_002311009.1| predicted protein [Populus trichocarpa]
gi|222850829|gb|EEE88376.1| predicted protein [Populus trichocarpa]
Length = 297
Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 175/227 (77%), Positives = 201/227 (88%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A+ GWAVD+IDPRELSAKML K KINLNEISHDSA GL+TRVLN+G+LLT+VY+DTVG
Sbjct: 71 ANELIGWAVDVIDPRELSAKMLKKIKINLNEISHDSASGLVTRVLNMGVLLTDVYVDTVG 130
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
D EKY+ KLS+RFPSIKFVV+KKADSLYPVVSGASIVAKVTRDR LR W+ +ETAENM R
Sbjct: 131 DPEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLDETAENMTR 190
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
NFGSGYPGDPETK+WL H+H +FGFPSLVRFSWGTCTS+ K++VEV+WESD+ +ED SS
Sbjct: 191 NFGSGYPGDPETKSWLEKHQHSVFGFPSLVRFSWGTCTSYSKNMVEVVWESDKTEEDGSS 250
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
SGKRQLKLS G ++SKR+SEEIESSGK RCKF +ARKLEQL +F
Sbjct: 251 SSSGKRQLKLSSFGVTTSKRKSEEIESSGKSRCKFFQARKLEQLANF 297
>gi|21593541|gb|AAM65508.1| putative ribonuclease large subunit [Arabidopsis thaliana]
Length = 280
Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 165/223 (73%), Positives = 193/223 (86%), Gaps = 1/223 (0%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+LLTE YLDTVGD +K
Sbjct: 59 LGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDK 118
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+ EET E+++RNFGS
Sbjct: 119 YKIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGS 178
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSG 194
GYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K VEV WE+DE +E+ + S
Sbjct: 179 GYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADE-NEESGNGSSS 237
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
KRQ KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT F
Sbjct: 238 KRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 280
>gi|18400719|ref|NP_565584.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
gi|49066054|sp|Q9SEZ6.2|RNH2A_ARATH RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|26450346|dbj|BAC42289.1| putative ribonuclease large subunit [Arabidopsis thaliana]
gi|28973385|gb|AAO64017.1| putative ribonuclease large subunit [Arabidopsis thaliana]
gi|330252563|gb|AEC07657.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
Length = 296
Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 165/223 (73%), Positives = 193/223 (86%), Gaps = 1/223 (0%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+LLTE YLDTVGD +K
Sbjct: 75 LGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDK 134
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+ EET E+++RNFGS
Sbjct: 135 YRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGS 194
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSG 194
GYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K VEV WE+DE +E+ + S
Sbjct: 195 GYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADE-NEESGNGSSS 253
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
KRQ KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT F
Sbjct: 254 KRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 296
>gi|297825539|ref|XP_002880652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326491|gb|EFH56911.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 296
Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/223 (74%), Positives = 190/223 (85%), Gaps = 1/223 (0%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+LLTE YLDTVGD EK
Sbjct: 75 LGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPEK 134
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR LR W+ EET E+++RNFGS
Sbjct: 135 YRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALREWLVEETGEDINRNFGS 194
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSG 194
GYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K VEV WE+DE +E + S
Sbjct: 195 GYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADETEES-GNGSSS 253
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
KRQ KLS GF + +RSEEIESSGKGRCKF +ARK++QLT F
Sbjct: 254 KRQAKLSSFGFKTCDKRSEEIESSGKGRCKFFQARKIQQLTQF 296
>gi|125533439|gb|EAY79987.1| hypothetical protein OsI_35154 [Oryza sativa Indica Group]
Length = 298
Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 189/222 (85%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GW VD+I P+ELSAKML ++K+NLNEISH+SA+GL+ R L++G+LL EVY+DTVGDAEKY
Sbjct: 76 GWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALDMGVLLAEVYIDTVGDAEKY 135
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
+ KL+++FP IKFVV+KKADSL+PVVSGASIV+KVTRDR LR W+F+ETA+NMH N GSG
Sbjct: 136 RIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQNMHMNTGSG 195
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGK 195
YPGDP TK WL DHKH IFGFPSLVRFSWGTCT F D +EV WES+E++ED S S K
Sbjct: 196 YPGDPSTKQWLEDHKHPIFGFPSLVRFSWGTCTPFFNDAIEVTWESNELEEDAGSNGSVK 255
Query: 196 RQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
RQ+KLS +GF+ KR+SEEI+SSGKGRCKF +ARKLE + F
Sbjct: 256 RQVKLSSLGFTGFKRKSEEIDSSGKGRCKFFQARKLELVRKF 297
>gi|115484243|ref|NP_001065783.1| Os11g0153900 [Oryza sativa Japonica Group]
gi|62701661|gb|AAX92734.1| ribonuclease HII, putative [Oryza sativa Japonica Group]
gi|77548724|gb|ABA91521.1| ribonuclease HI large subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|113644487|dbj|BAF27628.1| Os11g0153900 [Oryza sativa Japonica Group]
gi|125576251|gb|EAZ17473.1| hypothetical protein OsJ_33004 [Oryza sativa Japonica Group]
Length = 298
Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 189/222 (85%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GW VD+I P+ELSAKML ++K+NLNEISH+SA+GL+ R L++G+LL EVY+DTVGDAEKY
Sbjct: 76 GWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALDMGVLLAEVYIDTVGDAEKY 135
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
+ KL+++FP IKFVV+KKADSL+PVVSGASIV+KVTRDR LR W+F+ETA+NMH N GSG
Sbjct: 136 RIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQNMHMNTGSG 195
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGK 195
YPGDP TK WL DHKH IFGFPSLVRFSWGTCT F D +EV WES+E++ED S S K
Sbjct: 196 YPGDPSTKQWLEDHKHPIFGFPSLVRFSWGTCTPFFNDAIEVTWESNELEEDAGSNGSVK 255
Query: 196 RQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
RQ+KLS +GF+ KR+SEEI+SSGKGRCKF +ARKLE + F
Sbjct: 256 RQVKLSSLGFTGFKRKSEEIDSSGKGRCKFFQARKLELVRKF 297
>gi|357160839|ref|XP_003578893.1| PREDICTED: ribonuclease H2 subunit A-like [Brachypodium distachyon]
Length = 299
Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 191/226 (84%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
++ GW VD+I P+ELSAKML + K+NLNEISH+SA+GL+ + L++G+LLT+VY+DTVGD
Sbjct: 73 NSAIGWEVDVICPKELSAKMLKRTKVNLNEISHNSAMGLVKKALSMGVLLTDVYIDTVGD 132
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
EKY+ KL+++FP I FVV+KKADSLYPVVSGASIVAKVTRDR LR W+F+ETA+NMH +
Sbjct: 133 PEKYRVKLTEKFPGITFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDETAQNMHMD 192
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSR 191
GSGYPGDP T WL DHKH +FGFP+LVRFSWGTCTS+FK VEV WESDE+DED +S
Sbjct: 193 TGSGYPGDPNTIQWLKDHKHPVFGFPTLVRFSWGTCTSYFKTGVEVTWESDELDEDAASN 252
Query: 192 RSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
S KRQ++LS +GF+ KR+SEEIESSGKGRCKF +ARKLE + F
Sbjct: 253 GSAKRQVRLSSLGFTGFKRKSEEIESSGKGRCKFFQARKLELVRKF 298
>gi|242094016|ref|XP_002437498.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
gi|241915721|gb|EER88865.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
Length = 297
Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 155/222 (69%), Positives = 188/222 (84%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GW VD+I P++LSAKML K+K+NLNEISH+SA+GL+ ++L++G+LL EVY+DTVGD EKY
Sbjct: 75 GWEVDVICPKDLSAKMLRKSKVNLNEISHNSAMGLVRKLLDMGVLLAEVYIDTVGDPEKY 134
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
+ KL+++FP IKFVV+KKADSLYPVVSGASIVAKVTRDR LR W+F+ETA NMH GSG
Sbjct: 135 RIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDETALNMHMKTGSG 194
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGK 195
YPGD +TK WL DHKH +FGFP+LVRFSWGTCT FKD VEV WESDE+DED + S K
Sbjct: 195 YPGDTDTKQWLQDHKHPVFGFPTLVRFSWGTCTPFFKDAVEVTWESDEVDEDGTGNGSTK 254
Query: 196 RQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
RQ+KLS +GF+ KR++EEIESSGKGRCKF +ARKLE + F
Sbjct: 255 RQVKLSSLGFTGFKRKTEEIESSGKGRCKFFQARKLELVRKF 296
>gi|242082852|ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
gi|241942544|gb|EES15689.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
Length = 297
Score = 335 bits (860), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 155/223 (69%), Positives = 188/223 (84%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW VD+I P++LSAKML K+K+NLNEISH+SA+GL+ +VL++GILL EVY+DTVGD EK
Sbjct: 74 IGWEVDVICPKDLSAKMLKKSKVNLNEISHNSAMGLVRKVLDMGILLAEVYIDTVGDPEK 133
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y+ KL+++FP IKFVV+KKADSLYPVVSGASIVAKVTRDR LR W+F+ETA ++H GS
Sbjct: 134 YRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDETALSLHMKTGS 193
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSG 194
GYPGDP+TK WL DHKH +FGFP+LVRFSWGTC FKD VEV WESDE+DED + S
Sbjct: 194 GYPGDPDTKQWLEDHKHPVFGFPTLVRFSWGTCKPFFKDAVEVTWESDEVDEDGTDNGST 253
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
KRQ+KLS +GF+ KR++EEIESSGKGRCKF +ARKLE + F
Sbjct: 254 KRQVKLSSLGFTGFKRKTEEIESSGKGRCKFFQARKLELVRKF 296
>gi|225464176|ref|XP_002269852.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Vitis vinifera]
Length = 278
Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 161/227 (70%), Positives = 185/227 (81%), Gaps = 19/227 (8%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A GWAVD+IDP ELSAKML K VLN+G+LLTEVY+DTVG
Sbjct: 71 ADESIGWAVDVIDPWELSAKMLKK-------------------VLNMGVLLTEVYVDTVG 111
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
DAEKY+ KLS+RFP++KFVV+KKADSLYPVVSGASIVAKVTRDR LR W+ ETAENMHR
Sbjct: 112 DAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLVETAENMHR 171
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
NFGSGYPGDP TK+WL HKH +FGFP+LVRFSWGTCT++ KDIVEVLWE+D+++ED S+
Sbjct: 172 NFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIVEVLWEADKVEEDGST 231
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
R+GKRQLKLS +GF SKR+SEEIESSGKGRCKF +ARKLEQLT F
Sbjct: 232 NRNGKRQLKLSSVGFIESKRKSEEIESSGKGRCKFFQARKLEQLTQF 278
>gi|413916142|gb|AFW56074.1| hypothetical protein ZEAMMB73_446071 [Zea mays]
Length = 297
Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 148/227 (65%), Positives = 189/227 (83%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A++ GW VD+I P++LSAKML ++K+NLNEISH+SA+GL+ +VL++G+LL EVY+DTVG
Sbjct: 70 ANSSIGWEVDVICPKDLSAKMLKRSKVNLNEISHNSAMGLVRKVLDMGVLLAEVYVDTVG 129
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
D EKY+ KL+++FP +KFVV+KKADSLYPVVSGASI AKVTRDR LR W+F+ETA ++H
Sbjct: 130 DPEKYRTKLTEKFPGVKFVVAKKADSLYPVVSGASIAAKVTRDRALRNWVFDETALSLHM 189
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
GSGYPGDP+TK WL DHKH +FGFP+LVRFSWGTC FKD V+V WESDE+DE+ +
Sbjct: 190 RTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSWGTCKPFFKDAVDVTWESDEVDEEGTD 249
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
KRQ+KLS +GF+ KR++E+IESSGKGRCKF +ARKLE + F
Sbjct: 250 NGGAKRQVKLSSLGFTGFKRKTEDIESSGKGRCKFFQARKLELVRKF 296
>gi|356536352|ref|XP_003536703.1| PREDICTED: ribonuclease H2 subunit A-like isoform 2 [Glycine max]
Length = 278
Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 159/228 (69%), Positives = 183/228 (80%), Gaps = 22/228 (9%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
++ GW VD+IDPRELSAKML K VL +G+LLTEVY+DTVGD
Sbjct: 71 NDSIGWDVDVIDPRELSAKMLKK-------------------VLKMGVLLTEVYIDTVGD 111
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
A KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAKVTRDR LR W+ +ETAENM RN
Sbjct: 112 AGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMQRN 171
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDED--VS 189
FGSGYPGDP+TK+WL DHKH IFGFPSLVRFSWGTC S+FKD EVLWESD +DED S
Sbjct: 172 FGSGYPGDPQTKSWLEDHKHHIFGFPSLVRFSWGTCNSYFKDAAEVLWESDNLDEDGGGS 231
Query: 190 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ ++GKRQLKLS++GF++SK RSEEIESSGKGRC+F +ARKLE LT+F
Sbjct: 232 NNKNGKRQLKLSNVGFTTSK-RSEEIESSGKGRCRFFQARKLEHLTYF 278
>gi|145329613|ref|NP_001077956.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
gi|330252564|gb|AEC07658.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
Length = 277
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 176/223 (78%), Gaps = 20/223 (8%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAVD+IDPRELSAKML K VL++G+LLTE YLDTVGD +K
Sbjct: 75 LGWAVDVIDPRELSAKMLAK-------------------VLDMGVLLTEAYLDTVGDPDK 115
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+ EET E+++RNFGS
Sbjct: 116 YRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGS 175
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSG 194
GYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K VEV WE+DE +E+ + S
Sbjct: 176 GYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADE-NEESGNGSSS 234
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
KRQ KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT F
Sbjct: 235 KRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 277
>gi|294464821|gb|ADE77916.1| unknown [Picea sitchensis]
Length = 293
Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 148/224 (66%), Positives = 180/224 (80%), Gaps = 4/224 (1%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A GWAVDIIDPRELSAKML + K+NLN ISHD+A+GL+ VL+ GILL+EVY+DTVG
Sbjct: 70 ADASLGWAVDIIDPRELSAKMLQRIKVNLNTISHDAAMGLVNTVLSKGILLSEVYVDTVG 129
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
DA+KY+ KL ++FP IKFVVSKKADSLYP+VSGASIVAKVTRD LRGW+ +ETAE + R
Sbjct: 130 DADKYRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAKVTRDNALRGWVLDETAEGISR 189
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
NFGSGYPGDPETKAWL ++KH +FGFP+LVRFSW TC S+ V V+WE DE D+ S+
Sbjct: 190 NFGSGYPGDPETKAWLEENKHPVFGFPTLVRFSWATCNSYTAKGVTVIWEPDEEDK-ASN 248
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 234
K+QL L+ F + KR+SEE+ESSGKGR KF +RKL+Q+
Sbjct: 249 GGDNKKQLTLN---FPTVKRKSEELESSGKGRFKFFSSRKLQQV 289
>gi|226500696|ref|NP_001152248.1| ribonuclease HI large subunit [Zea mays]
gi|195654267|gb|ACG46601.1| ribonuclease HI large subunit [Zea mays]
Length = 284
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 128/222 (57%), Positives = 167/222 (75%), Gaps = 15/222 (6%)
Query: 17 WAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
W VD+I P+++SAKML K +K+NLNEISH+SA+GL+ +VL +G+LL EVY+DTVGD EKY
Sbjct: 76 WEVDVICPKDISAKMLKKKSKVNLNEISHNSAMGLVRKVLRMGVLLAEVYVDTVGDPEKY 135
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
+ KL+++F IKFVV+KKADSLYPV+SGASIVAKVTRDR LR W+F+ETA ++H SG
Sbjct: 136 RTKLTEKFIGIKFVVAKKADSLYPVISGASIVAKVTRDRALRNWVFDETALSLHMRTRSG 195
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGK 195
Y GDP+TK WL DHKH++FGF FKD V+V WESD++D++ K
Sbjct: 196 YLGDPDTKRWLEDHKHLVFGF--------------FKDAVDVTWESDKVDQEEIDSGDTK 241
Query: 196 RQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
RQ+KL +GF+ KR++EEIES+GKG CKF + KLE + F
Sbjct: 242 RQVKLLSLGFTGFKRKTEEIESTGKGCCKFFQVHKLELVRKF 283
>gi|255640332|gb|ACU20454.1| unknown [Glycine max]
Length = 219
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/149 (79%), Positives = 131/149 (87%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
++ GW VD+IDPRELSAKML KNKINLNEISH SA+GLI RVL +G+LLTEVY+DTVGD
Sbjct: 71 NDSIGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVLLTEVYIDTVGD 130
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
A KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAKVTRDR R W+ +ETAENM RN
Sbjct: 131 AGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRASREWVLDETAENMQRN 190
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLV 160
FGSGYPGDP+TK+WL DHKH IFGFPSLV
Sbjct: 191 FGSGYPGDPQTKSWLEDHKHHIFGFPSLV 219
>gi|224110154|ref|XP_002315431.1| predicted protein [Populus trichocarpa]
gi|222864471|gb|EEF01602.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/264 (52%), Positives = 165/264 (62%), Gaps = 41/264 (15%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A+ GWAVD+ DPRELSAKML KNKINLNEISHDSA GL+ RVLN+G+LLTEV +DTVG
Sbjct: 46 ANESIGWAVDVNDPRELSAKMLKKNKINLNEISHDSASGLVNRVLNMGVLLTEVCVDTVG 105
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
D EKY+ KLS+ FP +KFVV+KKA SLYPVVSGASIVAKV F
Sbjct: 106 DPEKYRIKLSESFPFVKFVVAKKAGSLYPVVSGASIVAKVVISHPFDSLNFRLQEIGPCE 165
Query: 131 NFGSGYPGDPETKAWL-----------------------TDHKHIIFGFPSLVRFSWGTC 167
+ GY + K WL H+H +FGFP+LVRFSWGTC
Sbjct: 166 D---GYLMK-QLKTWLGILDLDTLEFYCCVQILKLKLGWNKHEHSVFGFPTLVRFSWGTC 221
Query: 168 TSHFKDIVEVL--------------WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSE 213
T + K++V++L ESD++ ED SS S KRQLK S G ++SKR+SE
Sbjct: 222 TPYSKNMVDLLNVSCLATFFFLFLSRESDKLVEDGSSSSSRKRQLKSSSFGVTTSKRKSE 281
Query: 214 EIESSGKGRCKFLEARKLEQLTHF 237
E ESSGK RCKF RKLEQL +F
Sbjct: 282 ETESSGKSRCKFFHTRKLEQLANF 305
>gi|168019116|ref|XP_001762091.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686808|gb|EDQ73195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 307
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 121/226 (53%), Positives = 151/226 (66%), Gaps = 16/226 (7%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A + GWAVD+IDP++LSAKML + K+NLN IS +SA+GLI L++G+ LTEV++DTVG
Sbjct: 71 ADDLMGWAVDVIDPKDLSAKMLRRAKVNLNTISFESAMGLIRNTLDLGVFLTEVFVDTVG 130
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
D KYQ L+ +FP I+F VSKKADSL+P+VS ASIVAKVTRDR LR W+ +ET + R
Sbjct: 131 DPGKYQDMLTTKFPGIRFTVSKKADSLFPIVSAASIVAKVTRDRALRDWVVDETGREVTR 190
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVS 189
FGSGYPGDPETK WL DH +FGFPSLVRFSW TC + K V V WES + DED
Sbjct: 191 GFGSGYPGDPETKTWLEDHVDPVFGFPSLVRFSWATCKPYLTKGGVFVYWESADDDEDEV 250
Query: 190 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 235
++ K +G S R R + E R+L+Q T
Sbjct: 251 EKKH-----KPKHVGEQSCARM----------RHSYFERRQLQQRT 281
>gi|302800969|ref|XP_002982241.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
gi|300149833|gb|EFJ16486.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
Length = 261
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/212 (53%), Positives = 144/212 (67%), Gaps = 18/212 (8%)
Query: 25 RELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFP 84
REL ++ K +LN+IS+DSAIGLI VL+ G+LL+EVY+DTVGDAEKYQA+LS+ FP
Sbjct: 64 RELEGGPIDGVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYVDTVGDAEKYQARLSELFP 123
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
IKF V+KKADSL+P+VS ASI AKVTRD+ L+ W+ +E + RNFGSGYPGDPETKA
Sbjct: 124 HIKFTVAKKADSLFPIVSAASIAAKVTRDQALKSWVMDEAGCAISRNFGSGYPGDPETKA 183
Query: 145 WLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRSGKRQLKLSDI 203
WL H +FGFPSLVRFSW TC + V V WE+DE D+ ++S
Sbjct: 184 WLEQHMDDVFGFPSLVRFSWATCKPLIAEGGVHVYWEADEDDDTALVKKS---------- 233
Query: 204 GFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 235
RS + ESSG R F +R+L+Q+T
Sbjct: 234 -------RSAQTESSGALRHSFFRSRQLQQVT 258
>gi|356521108|ref|XP_003529200.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A-like
[Glycine max]
Length = 221
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/149 (69%), Positives = 118/149 (79%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
++ G VD+IDPRELS KML KNKINLNEI H SA+ LI +VL + +LLTEVY+DT GD
Sbjct: 73 NDSIGXDVDVIDPRELSTKMLKKNKINLNEILHSSAMSLIDKVLKMEVLLTEVYIDTFGD 132
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
A KY+ KL FPSIKFVV+KKADSL P+VSGASIVAKVTRD LR W+ +ET ENM R
Sbjct: 133 ARKYEIKLPNSFPSIKFVVAKKADSLXPIVSGASIVAKVTRDHALREWVLDETVENMQRF 192
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLV 160
FG Y GDP+TK+WL DHKH IFGFPSLV
Sbjct: 193 FGFAYLGDPQTKSWLEDHKHHIFGFPSLV 221
>gi|302765497|ref|XP_002966169.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
gi|300165589|gb|EFJ32196.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
Length = 361
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/203 (53%), Positives = 136/203 (66%), Gaps = 18/203 (8%)
Query: 25 RELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFP 84
REL ++ K +LN+IS+DSAIGLI VL+ G+LL+EVY+DTVGDAEKYQA+LS+ FP
Sbjct: 48 RELEGGPIDGVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYVDTVGDAEKYQARLSELFP 107
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
IKF V+KKADSL+P+VS ASI AKVTRD+ L+ W+ +E + RNFGSGYPGDP+TKA
Sbjct: 108 HIKFTVAKKADSLFPIVSAASIAAKVTRDQALKSWVMDEAGCTISRNFGSGYPGDPDTKA 167
Query: 145 WLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRSGKRQLKLSDI 203
WL H +FGFPSLVRFSW TC + V V WE+DE D+ ++S
Sbjct: 168 WLEQHMDDVFGFPSLVRFSWATCKPLIAEGGVHVYWEADEDDDTALVKKS---------- 217
Query: 204 GFSSSKRRSEEIESSGKGRCKFL 226
RS + ESSG R F
Sbjct: 218 -------RSAQTESSGALRHSFF 233
>gi|86171485|ref|XP_966221.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
gi|46361187|emb|CAG25051.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
Length = 288
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 136/206 (66%), Gaps = 9/206 (4%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
PFGW V I+ P+++SAKML K K NLNEISHD+AI +I V+N G LTEV++DTVG A
Sbjct: 77 PFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKAS 136
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD L+ W +EE N+ FG
Sbjct: 137 VYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYEEPIINIDNGFG 196
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDEDVSSRR 192
SGYPGDP TK +L ++ +FGFPS+VRFSW T + +++ E + W DE D +
Sbjct: 197 SGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLENLGEKIEWYDDEEGND---SK 253
Query: 193 SGKRQLKLSDIGFSSSKRRSEEIESS 218
+ KR+ I F SK +S I+ S
Sbjct: 254 ALKRK-----IPFDYSKFKSPYIKRS 274
>gi|432844392|ref|XP_004065747.1| PREDICTED: ribonuclease H2 subunit A-like [Oryzias latipes]
Length = 306
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/189 (48%), Positives = 125/189 (66%), Gaps = 1/189 (0%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A + GWA+ ++ P +S ML + K NLN +SHD+AIGLI L+ G+ L E+Y+DTVG
Sbjct: 86 AKSYVGWALHVLSPNTISTSMLQRTKYNLNALSHDTAIGLIQYALDSGVQLKEIYVDTVG 145
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
AEKY+ KLSQRFP I+ V KADSL+PVVS ASI AKV RDR ++GW F E ++
Sbjct: 146 PAEKYEEKLSQRFPGIEVTVRPKADSLFPVVSAASICAKVARDRVVKGWKFAEDLGDVDA 205
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVS 189
++GSGYP DP+TKAWL + +FG+P VRFSW T + V V W+ DE D + +
Sbjct: 206 DYGSGYPNDPKTKAWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDDDEEDGEKA 265
Query: 190 SRRSGKRQL 198
++R + +
Sbjct: 266 AKRLNNKSM 274
>gi|68067767|ref|XP_675818.1| ribonuclease H1 large subunit [Plasmodium berghei strain ANKA]
gi|56495218|emb|CAH97375.1| ribonuclease H1 large subunit, putative [Plasmodium berghei]
Length = 288
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/185 (52%), Positives = 132/185 (71%), Gaps = 2/185 (1%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
PF W V I+ P+++SAKML + K NLNEISHD+AI +I VLN G LTEV++DTVG A
Sbjct: 77 PFAWRVHILMPQDISAKMLKRQKYNLNEISHDTAISIIQHVLNRGCNLTEVFVDTVGKAS 136
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
Y+ KL + FP+IK VV +KADSLYPVVS ASI AKVTRD ++ W +EE N+ + FG
Sbjct: 137 VYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEHIINIDKGFG 196
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRS 193
SGYPGDP TK +L ++ IFGFPS+VRFSW T + +++ E + DE E+ ++ ++
Sbjct: 197 SGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWSTADTMLENLGEKIEWYDE--EESNNSKA 254
Query: 194 GKRQL 198
KR++
Sbjct: 255 MKRKI 259
>gi|384253032|gb|EIE26507.1| ribonuclease HII [Coccomyxa subellipsoidea C-169]
Length = 337
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 150/223 (67%), Gaps = 13/223 (5%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
G AVDI+D R +SA+ML+ + +LN +++++ LI VL +G+ L EVY+DTVG+A ++
Sbjct: 127 GTAVDILDARTISAQMLHSQRESLNVLANNATFRLIEGVLELGVRLREVYVDTVGEASRH 186
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L++RFP I+F+V KADSLYP+VS ASIVAKVTRDR ++ + E E + R GSG
Sbjct: 187 QARLTERFPGIRFIVCPKADSLYPIVSAASIVAKVTRDRLVKDFSIAEKVE-VGRQTGSG 245
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRSG 194
YPGDP+TKAWL +H +FGFPS+VRFSW T + + V V WE DE ++D S G
Sbjct: 246 YPGDPDTKAWLQEHIDPVFGFPSIVRFSWSTASKILETGAVPVQWECDE-EQDGS---QG 301
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
++ L F + R++ S+G GR F A KL+++ +F
Sbjct: 302 QQVL-----AFGNKPARAQ--VSTGVGRHAFFRAHKLQRVANF 337
>gi|82706071|ref|XP_727229.1| ribonuclease HII [Plasmodium yoelii yoelii 17XNL]
gi|23482972|gb|EAA18794.1| ribonuclease HII, putative [Plasmodium yoelii yoelii]
Length = 307
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/185 (52%), Positives = 132/185 (71%), Gaps = 2/185 (1%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
PF W V I+ P+++SAKML K K NLNEISHD+AI +I VL+ G LTEV++DTVG A
Sbjct: 77 PFAWRVHILMPQDISAKMLKKEKYNLNEISHDTAISIIQHVLSRGCNLTEVFVDTVGKAS 136
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
Y+ KL + FP+IK VV +KADSLYPVVS ASI AKVTRD ++ W +EE N+ + FG
Sbjct: 137 VYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEQIINIDKGFG 196
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRS 193
SGYPGDP TK +L ++ IFGFPS+VRFSW T + +++ E + DE E+ ++ ++
Sbjct: 197 SGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWSTADTMLENLGEKIEWYDE--EESNNSKA 254
Query: 194 GKRQL 198
KR++
Sbjct: 255 MKRKI 259
>gi|223967505|emb|CAR93483.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|223967503|emb|CAR93482.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|223967509|emb|CAR93485.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806080|emb|CAL26423.1| CG13690 [Drosophila melanogaster]
gi|116806088|emb|CAL26427.1| CG13690 [Drosophila melanogaster]
gi|116806100|emb|CAL26433.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|24580635|ref|NP_608521.1| CG13690 [Drosophila melanogaster]
gi|11387117|sp|Q9VPP5.1|RNH2A_DROME RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|7296208|gb|AAF51500.1| CG13690 [Drosophila melanogaster]
gi|66772719|gb|AAY55671.1| IP10665p [Drosophila melanogaster]
gi|220951678|gb|ACL88382.1| CG13690-PA [synthetic construct]
gi|223967491|emb|CAR93476.1| CG13690-PA [Drosophila melanogaster]
gi|223967495|emb|CAR93478.1| CG13690-PA [Drosophila melanogaster]
gi|223967497|emb|CAR93479.1| CG13690-PA [Drosophila melanogaster]
gi|223967507|emb|CAR93484.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806082|emb|CAL26424.1| CG13690 [Drosophila melanogaster]
gi|116806084|emb|CAL26425.1| CG13690 [Drosophila melanogaster]
gi|116806090|emb|CAL26428.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806098|emb|CAL26432.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806086|emb|CAL26426.1| CG13690 [Drosophila melanogaster]
gi|223967493|emb|CAR93477.1| CG13690-PA [Drosophila melanogaster]
gi|223967499|emb|CAR93480.1| CG13690-PA [Drosophila melanogaster]
gi|223967501|emb|CAR93481.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806096|emb|CAL26431.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806092|emb|CAL26429.1| CG13690 [Drosophila melanogaster]
gi|116806094|emb|CAL26430.1| CG13690 [Drosophila melanogaster]
gi|116806102|emb|CAL26434.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|348520822|ref|XP_003447926.1| PREDICTED: ribonuclease H2 subunit A-like [Oreochromis niloticus]
Length = 308
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 6/225 (2%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A + GWA+ I+ P +S ML + K NLN +SHD+AI L+ L+ G+ L E+Y+DTVG
Sbjct: 86 AKSYVGWALQILSPNTISTCMLRRTKYNLNALSHDTAIDLVQYALDSGVQLKEIYVDTVG 145
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
A+KY+ KLSQRFP I+ V KADSL+PVVS ASI AKV RDR ++GW F E +
Sbjct: 146 PADKYEVKLSQRFPGIQVTVRPKADSLFPVVSAASICAKVARDRVVKGWNFAEDLGEVDT 205
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVS 189
++GSGYP DP+TKAWL + +FG+P VRFSW T + V V W+ DE D + +
Sbjct: 206 DYGSGYPNDPKTKAWLLKYLDPVFGYPQFVRFSWSTAQTLMDSKAVNVHWDDDEEDGEKA 265
Query: 190 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 234
++R + + LS SS + +F R+L+ L
Sbjct: 266 AQRQNNKSM-LSYFSVSSGGNNQNATHQAH----RFFTERRLKSL 305
>gi|195575541|ref|XP_002077636.1| GD22959 [Drosophila simulans]
gi|194189645|gb|EDX03221.1| GD22959 [Drosophila simulans]
Length = 347
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLENVMEF 347
>gi|195350095|ref|XP_002041577.1| GM16670 [Drosophila sechellia]
gi|194123350|gb|EDW45393.1| GM16670 [Drosophila sechellia]
Length = 347
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLENVMEF 347
>gi|195470258|ref|XP_002087425.1| GE16128 [Drosophila yakuba]
gi|194173526|gb|EDW87137.1| GE16128 [Drosophila yakuba]
Length = 347
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 139/228 (60%), Gaps = 10/228 (4%)
Query: 10 WASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
+A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWKFPEGLVIKD 249
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 189
FGSGYPGDP T+ +LT+H ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NAFGSGYPGDPVTRRFLTEHIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 190 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R L + F
Sbjct: 308 PKFAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLGSVMEF 347
>gi|194766523|ref|XP_001965374.1| GF24795 [Drosophila ananassae]
gi|190617984|gb|EDV33508.1| GF24795 [Drosophila ananassae]
Length = 347
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/228 (44%), Positives = 139/228 (60%), Gaps = 10/228 (4%)
Query: 10 WASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
+A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ ++EVY+DTV
Sbjct: 130 YATSCIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNISEVYVDTV 189
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPTFKITVAKKADSTYPIVSAASICAKVTRDHALKVWNFPEGLVIKD 249
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 189
FGSGYPGDP TK +L +H ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NAFGSGYPGDPVTKRFLAEHIDVVFGFPRLVRFSWSTAENALADKAFDM-EFDEPDTE-K 307
Query: 190 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R L + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLANVIDF 347
>gi|194853461|ref|XP_001968168.1| GG24650 [Drosophila erecta]
gi|190660035|gb|EDV57227.1| GG24650 [Drosophila erecta]
Length = 347
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 139/228 (60%), Gaps = 10/228 (4%)
Query: 10 WASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
+A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCIGWAVEIISPSTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWKFPEGLVIKD 249
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 189
FGSGYPGDP TK +L +H ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NAFGSGYPGDPVTKRFLAEHIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 190 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
++ +G + K F + + E I + C+F + R L + F
Sbjct: 308 AKFAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLGNVMDF 347
>gi|37362282|gb|AAQ91269.1| ribonuclease H2, large subunit [Danio rerio]
Length = 307
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 133/220 (60%), Gaps = 7/220 (3%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AEKY
Sbjct: 91 GWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F E ++ ++GSG
Sbjct: 151 QDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRSG 194
YP DP+TK+WL + +FG+P VRFSW T + V V W+ DE D ++
Sbjct: 211 YPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDDDEED----GEKAA 266
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 234
RQ S + + S + SE + R F RKL+ +
Sbjct: 267 ARQNNTSVLSYFSRNKPSELTHTRDTHR--FFTERKLKSI 304
>gi|28374439|gb|AAH46061.1| Ribonuclease H2, subunit A [Danio rerio]
Length = 307
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 133/220 (60%), Gaps = 7/220 (3%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AEKY
Sbjct: 91 GWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F E ++ ++GSG
Sbjct: 151 QDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRSG 194
YP DP+TK+WL + +FG+P VRFSW T + V V W+ DE D ++
Sbjct: 211 YPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDDDEED----GEKAA 266
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 234
RQ S + + S + SE + R F RKL+ +
Sbjct: 267 ARQNNTSVLSYFSRNKPSELTHTRDTHR--FFTERKLKSI 304
>gi|195456019|ref|XP_002074967.1| GK22869 [Drosophila willistoni]
gi|194171052|gb|EDW85953.1| GK22869 [Drosophila willistoni]
Length = 336
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 139/228 (60%), Gaps = 10/228 (4%)
Query: 10 WASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
+A+ GWAV+II P +S+ M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 119 YATECIGWAVEIISPNVISSSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVQIAEVYVDTV 178
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 179 GPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWKFPEGLVIKD 238
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 189
FGSGYPGDP TK +L ++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 239 NAFGSGYPGDPVTKRFLVENIDLVFGFPRLVRFSWSTAENALVDKAYEM-EFDEPDSE-K 296
Query: 190 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K + S + + EE C+FL R L +T F
Sbjct: 297 PKYAGAKLTKFFNKTTKSGEIKREE--------CRFLSQRHLGSVTDF 336
>gi|116806104|emb|CAL26435.1| CG13690 [Drosophila simulans]
Length = 347
Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 140/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSQ- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F +S E+ + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTK-----FFKGTTKSGEVT---REECRFFKQRHLENVMEF 347
>gi|449688727|ref|XP_002166509.2| PREDICTED: ribonuclease H2 subunit A-like, partial [Hydra
magnipapillata]
Length = 296
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 136/220 (61%), Gaps = 14/220 (6%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA+ II P E+S +ML + K+ LNEISH +AI L + +N G +TE+Y+DTVGDA K
Sbjct: 90 IGWAIKIISPTEISNEMLRRYKVTLNEISHGAAIELTRKTINAGANITEMYVDTVGDALK 149
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQ KLS+ F I V+ KAD+L+P+VS ASI AKV RDR ++ W F E ++ ++GS
Sbjct: 150 YQNKLSEVFDGISVKVTPKADALFPIVSAASICAKVARDRCIQNWQFPEG--DIKEDYGS 207
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRRS 193
GYP DP+TK WL D +FGFP VRFSW TC + K EV+WE DE +E +
Sbjct: 208 GYPADPKTKQWLKDVVDPVFGFPQFVRFSWSTCANILEKHACEVMWEDDEAEE------T 261
Query: 194 GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQ 233
K+ + ++ F + K+ + I KF RKLEQ
Sbjct: 262 DKKIIPIT--TFFAQKKNAANISVQPS---KFFLERKLEQ 296
>gi|195032708|ref|XP_001988545.1| GH10519 [Drosophila grimshawi]
gi|193904545|gb|EDW03412.1| GH10519 [Drosophila grimshawi]
Length = 334
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S+ M + K +LNEIS DSA+GLI ++ G+ + EVY+DT
Sbjct: 116 EYANSCIGWAVEIISPNVISSSMYRRTKCSLNEISMDSAMGLIQHAIDAGVNIAEVYVDT 175
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 176 VGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWQFPEGLLIK 235
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP TK +LT+H ++FGFP LVRFSW T + D + E DE D +
Sbjct: 236 DNAFGSGYPGDPVTKRFLTEHIDLVFGFPRLVRFSWSTAENALADKAFEM-EFDEPDSE- 293
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F ++ E++ + C+F + L+ +T F
Sbjct: 294 KPKYAGTKLTK-----FFKGTTKTGEVK---REECRFFKQCHLDNVTDF 334
>gi|48762662|ref|NP_956520.2| ribonuclease H2 subunit A [Danio rerio]
gi|47938809|gb|AAH71375.1| Ribonuclease H2, subunit A [Danio rerio]
Length = 307
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 133/220 (60%), Gaps = 7/220 (3%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AEKY
Sbjct: 91 GWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F E ++ ++GSG
Sbjct: 151 QDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRSG 194
YP DP+TK+WL + +FG+P VRFSW T + V V W+ DE D ++
Sbjct: 211 YPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDDDEED----GEKAA 266
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 234
RQ S + + S + SE + R F RKL+ +
Sbjct: 267 ARQNNTSVLSYFSRNKPSELTHTRDIHR--FFTERKLKSI 304
>gi|58037175|ref|NP_081463.1| ribonuclease H2 subunit A [Mus musculus]
gi|85541053|sp|Q9CWY8.2|RNH2A_MOUSE RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|312208159|pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
gi|23273263|gb|AAH38158.1| Ribonuclease H2, large subunit [Mus musculus]
gi|74138850|dbj|BAE27230.1| unnamed protein product [Mus musculus]
Length = 301
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 120/181 (66%), Gaps = 3/181 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRRSG 194
YP DP+TKAWL H +FGFP VRFSW T + K+ +V+WE E +ED R G
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED--PERPG 268
Query: 195 K 195
K
Sbjct: 269 K 269
>gi|221057860|ref|XP_002261438.1| ribonuclease H1 large subunit [Plasmodium knowlesi strain H]
gi|194247443|emb|CAQ40843.1| ribonuclease H1 large subunit, putative [Plasmodium knowlesi strain
H]
Length = 288
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/187 (50%), Positives = 131/187 (70%), Gaps = 6/187 (3%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
PFGW + ++ P+++SAKML K K NLNEISHD+AI +I V++ G LTEV++DTVG A
Sbjct: 77 PFGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIINHVISRGCNLTEVFVDTVGKAN 136
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
Y+ KL++ FP IK V +KADSLYPVVS ASI AKVTRD ++ W +EE N+ + FG
Sbjct: 137 VYEEKLTKLFPHIKCTVREKADSLYPVVSAASICAKVTRDFLIKKWKYEEPLVNIDKGFG 196
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSR-- 191
SGYPGDP TK +L ++ +FGFPS+VRFSW T +++E + + E +D+ +
Sbjct: 197 SGYPGDPITKNFLKNNFDSVFGFPSIVRFSWSTAD----NMLETMGDQIEWYDDIENNDS 252
Query: 192 RSGKRQL 198
R+ KR++
Sbjct: 253 RAIKRKM 259
>gi|12845627|dbj|BAB26828.1| unnamed protein product [Mus musculus]
Length = 301
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 120/181 (66%), Gaps = 3/181 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDRNVNVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRRSG 194
YP DP+TKAWL H +FGFP VRFSW T + K+ +V+WE E +ED R G
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED--PERPG 268
Query: 195 K 195
K
Sbjct: 269 K 269
>gi|351711560|gb|EHB14479.1| Ribonuclease H2 subunit A [Heterocephalus glaber]
Length = 298
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 116/178 (65%), Gaps = 1/178 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVKVTQVFVDTVGLPEMY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QKRLQQRFPEITVTVKAKADALYPVVSAASICAKVARDQAVKSWQFVEKLQDLDADYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDEDVSSRR 192
YP DP+TKAWL H +FGFP LVRFSW T + + E V WE +E RR
Sbjct: 211 YPNDPKTKAWLRRHVEPVFGFPQLVRFSWRTAQAILEKEAEGVTWEDSATEEQEGHRR 268
>gi|195118270|ref|XP_002003663.1| GI18036 [Drosophila mojavensis]
gi|193914238|gb|EDW13105.1| GI18036 [Drosophila mojavensis]
Length = 342
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI R ++ G+ + EVY+DT
Sbjct: 124 EYANSCIGWAVEIISPNVISNSMYRRSKCSLNEVSMDSAMGLIQRAIDAGVNIAEVYVDT 183
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 184 VGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWQFPEGLVIK 243
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP TK +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 244 DNAFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAENALADKAYEM-EFDEPDTE- 301
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F +S E++ + C+ + L+ +T F
Sbjct: 302 KPKYAGTKLTK-----FFKGTTKSGEVK---REECRLFKQCHLDNVTDF 342
>gi|354479535|ref|XP_003501965.1| PREDICTED: ribonuclease H2 subunit A-like [Cricetulus griseus]
Length = 302
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+DI+ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 91 GWALDILSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQGVNVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L QRFP ++ V KADSL+PVVS ASI AKV RD+ ++ W F E+ +++ ++GSG
Sbjct: 151 QARLQQRFPGMEVTVKAKADSLFPVVSAASIFAKVARDQAVKNWQFVESLQDLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDED 187
YP DP+TKAWL H +FGFP VRFSW T + + E V WE +ED
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEGVTWEDSAAEED 263
>gi|348565231|ref|XP_003468407.1| PREDICTED: ribonuclease H2 subunit A-like [Cavia porcellus]
Length = 298
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG A Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTASGLIQHALDQGVNVTQVFVDTVGLAASY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP + V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QERLQQRFPDVTVTVKAKADALYPVVSAASICAKVARDQAVKSWQFVEKEQDLDADYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDEDVSSRR 192
YP DP+TKAWL H +FGFP LVRFSW T + + E V WE ++E SR+
Sbjct: 211 YPNDPKTKAWLRRHVEPVFGFPQLVRFSWRTAQAILETEAENVTWEDSALEEQEGSRK 268
>gi|195388322|ref|XP_002052829.1| GJ19740 [Drosophila virilis]
gi|194149286|gb|EDW64984.1| GJ19740 [Drosophila virilis]
Length = 339
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S+ M + K +LNE+S DSA+GLI ++ G+ + EVY+DT
Sbjct: 121 EYANSCIGWAVEIISPNVISSSMYRRTKCSLNEVSMDSAMGLIQEAIDAGVNIAEVYVDT 180
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 181 VGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWQFPEGLIIK 240
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP TK +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 241 DNAFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 298
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F ++ E++ + C+F + L+ +T F
Sbjct: 299 KPKYAGTKLTK-----FFKGTTKTGEVK---REECRFFKQCHLDNVTEF 339
>gi|61557385|ref|NP_001013252.1| ribonuclease H2 subunit A [Rattus norvegicus]
gi|81889649|sp|Q5U209.1|RNH2A_RAT RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|55562777|gb|AAH86345.1| Rnaseh2a protein [Rattus norvegicus]
gi|55824706|gb|AAH86539.1| Ribonuclease H2, subunit A [Rattus norvegicus]
gi|149037817|gb|EDL92177.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
gi|149037820|gb|EDL92180.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
Length = 301
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG E Y
Sbjct: 91 GWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + ++GSG
Sbjct: 151 QARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 187
YP DP+TKAWL H +FGFP VRFSW T + K+ V WE +ED
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTWEDSAAEED 263
>gi|156101113|ref|XP_001616250.1| ribonuclease H1 large subunit [Plasmodium vivax Sal-1]
gi|148805124|gb|EDL46523.1| ribonuclease H1 large subunit , putative [Plasmodium vivax]
Length = 288
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/183 (50%), Positives = 126/183 (68%), Gaps = 4/183 (2%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
+S PFGW + ++ P+++SAKML K K NLNEISHD+AI +I V++ G LTEV++DTVG
Sbjct: 74 SSLPFGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIIDHVISRGCNLTEVFVDTVG 133
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD ++ W +EE N+ +
Sbjct: 134 KPSVYEEKLKRLFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEPLVNIDK 193
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
FGSGYPGDP TK +L ++ +FGFPS+VRFSW T +++E + E E +D+ +
Sbjct: 194 GFGSGYPGDPITKNFLKNNFDTVFGFPSIVRFSWSTAD----NMLETMGEQIEWYDDIEN 249
Query: 191 RRS 193
S
Sbjct: 250 NDS 252
>gi|195147238|ref|XP_002014587.1| GL19264 [Drosophila persimilis]
gi|194106540|gb|EDW28583.1| GL19264 [Drosophila persimilis]
Length = 340
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 140/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M + K +LNE+S +SA+GLI + ++ G+ + EVY+DT
Sbjct: 122 EYANSCVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDAGVNIAEVYVDT 181
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 182 VGPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWRFPEGLVIK 241
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP TK +LT+H ++FGFP LVRFSW T + + + E DE D ++
Sbjct: 242 DNAFGSGYPGDPVTKRFLTEHIDLVFGFPRLVRFSWSTAENALANKAYDM-EFDEPDSEM 300
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R L + F
Sbjct: 301 -PKYAGTKLTKF----FKGTTKDGEVI----REECRFFKQRHLSSVFEF 340
>gi|344282705|ref|XP_003413113.1| PREDICTED: ribonuclease H2 subunit A-like [Loxodonta africana]
Length = 298
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ + +T+V++DTVG EKY
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDRSVKVTQVFVDTVGLPEKY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ +R W F E +++ ++GSG
Sbjct: 151 QERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVRSWQFVEKLQDVDADYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDED 187
YP DP+TKAWL H IFGFP VRFSW T S ++ E V WE D + ED
Sbjct: 211 YPNDPKTKAWLKKHVEPIFGFPQFVRFSWRTAQSILEEEAEGVTWE-DSLAED 262
>gi|268612465|pdb|3KIO|A Chain A, Mouse Rnase H2 Complex
Length = 301
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 3/181 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S L + K NLN +SHD+A GLI L+ + +T+V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSXLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGXPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRRSG 194
YP DP+TKAWL H +FGFP VRFSW T + K+ +V+WE E +ED R G
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED--PERPG 268
Query: 195 K 195
K
Sbjct: 269 K 269
>gi|198473777|ref|XP_001356439.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
gi|198138103|gb|EAL33503.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
Length = 340
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 139/229 (60%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M + K +LNE+S +SA+GLI + ++ G+ + EVY+DT
Sbjct: 122 EYANSCVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDAGVNIAEVYVDT 181
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 182 VGPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWRFPEGLVIK 241
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP TK +LT+H ++FGFP LVRFSW T + + + E DE D +
Sbjct: 242 DNAFGSGYPGDPVTKRFLTEHIDLVFGFPRLVRFSWSTAENALANKAYDM-EFDEPDSE- 299
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R L + F
Sbjct: 300 KPKYAGTKLTKF----FKGTTKDGEVI----REECRFFKQRHLSNVFEF 340
>gi|327281022|ref|XP_003225249.1| PREDICTED: ribonuclease H2 subunit A-like [Anolis carolinensis]
Length = 300
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 132/221 (59%), Gaps = 14/221 (6%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ + EV++DTVG AEKY
Sbjct: 91 GWALHILSPNFISTSMQRRAKYNLNALSHDTAIGLIQHALDSGVQVAEVFVDTVGPAEKY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q KL Q+FP ++ V KADSL+PVVS ASI AKV RDR ++ W F E EN+ ++GSG
Sbjct: 151 QEKLKQQFPGLEVTVKPKADSLFPVVSAASICAKVARDRVVKNWKFVEALENVDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRSG 194
YP DP+TK WLT +FGFP VRFSW T ++ V V W+ E D S++S
Sbjct: 211 YPNDPKTKEWLTQCLDPVFGFPQFVRFSWSTAQVILENKAVAVRWDDTEDD---PSQKSA 267
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 235
+ L + ++R + +F RKLE +T
Sbjct: 268 QSLLSYFARKDTPTRRPAH----------RFFYERKLETVT 298
>gi|443699951|gb|ELT99170.1| hypothetical protein CAPTEDRAFT_183401 [Capitella teleta]
Length = 317
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 123/177 (69%), Gaps = 2/177 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWAV I+ P ++S ML ++K NLNE+SHD+AIGLI + L+ G+ + EV++DTVG EKY
Sbjct: 105 GWAVHILSPNQISNSMLRRSKYNLNELSHDTAIGLIQKALDSGVNVDEVFVDTVGMPEKY 164
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QAKL + FP +K V+KKAD+ YP+VS ASI AKV+RD ++ W F E + +++GSG
Sbjct: 165 QAKLERIFPELKITVAKKADATYPIVSAASICAKVSRDHAVKSWNFIEGRDYAGKSYGSG 224
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLWE-SDEMDEDVSS 190
YPGD ETK +L++ +FGFP VRFSW T ++ V V WE DEM +DV S
Sbjct: 225 YPGDSETKNFLSESMDPVFGFPQFVRFSWSTASNILDAKAVTVEWEDDDEMPDDVKS 281
>gi|38455391|ref|NP_006388.2| ribonuclease H2 subunit A [Homo sapiens]
gi|20981704|sp|O75792.2|RNH2A_HUMAN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Aicardi-Goutieres syndrome 4 protein;
Short=AGS4; AltName: Full=RNase H(35); AltName:
Full=Ribonuclease HI large subunit; Short=RNase HI large
subunit; AltName: Full=Ribonuclease HI subunit A
gi|15079910|gb|AAH11748.1| Ribonuclease H2, subunit A [Homo sapiens]
gi|119604719|gb|EAW84313.1| ribonuclease H2, large subunit [Homo sapiens]
gi|189067523|dbj|BAG37728.1| unnamed protein product [Homo sapiens]
Length = 299
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 150 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSG 209
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 180
YP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE
Sbjct: 210 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>gi|3334761|emb|CAB09725.1| ribonuclease HI large subunit [Homo sapiens]
Length = 299
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 150 QAQLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSG 209
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 180
YP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE
Sbjct: 210 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>gi|315364763|pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex
gi|315364766|pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex
gi|315364769|pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex
gi|315364772|pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex
gi|315364775|pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex
gi|315364778|pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex
Length = 302
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 93 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 152
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 153 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSG 212
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 180
YP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE
Sbjct: 213 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 258
>gi|397487580|ref|XP_003814870.1| PREDICTED: ribonuclease H2 subunit A [Pan paniscus]
gi|426387370|ref|XP_004060142.1| PREDICTED: ribonuclease H2 subunit A [Gorilla gorilla gorilla]
Length = 299
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 118/178 (66%), Gaps = 2/178 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E ++ ++GSG
Sbjct: 150 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDTDYGSG 209
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
YP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE D ED R
Sbjct: 210 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE-DSASEDQEGLR 266
>gi|196017000|ref|XP_002118348.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
gi|190579064|gb|EDV19170.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
Length = 299
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 132/224 (58%), Gaps = 16/224 (7%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GW V+II P ++S KML + K +LN +SHD+AI LI + + G+ + E+Y+DTVG AE Y
Sbjct: 90 GWLVEIISPSDISTKMLARTKYSLNAVSHDAAINLIRQSIQKGVQVKEIYVDTVGVAENY 149
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q KLS+ FP I V+ KAD+L+P VS ASI+AKVTRD+ L W F E ++G G
Sbjct: 150 QNKLSELFPDITIKVTPKADALFPCVSAASIIAKVTRDKVLSNWKFPEDESYNSSDYGCG 209
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESD-EMDEDVSSRRS 193
YP DP T+ WL + +FG+P VRFSW TC + V V WE D E D D +
Sbjct: 210 YPSDPATQKWLNSNLDKVFGYPQFVRFSWSTCQKILDESAVRVHWEDDEEFDNDNT---- 265
Query: 194 GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+S + F + K ++ R FLE+RKL+Q+ F
Sbjct: 266 ------VSLLSFFTQKG----VQEKAVKRHNFLESRKLKQVVKF 299
>gi|67480158|gb|AAY67993.1| ribonuclease HI large subunit [Oxyuranus scutellatus scutellatus]
Length = 211
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 128/221 (57%), Gaps = 14/221 (6%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ L EV++DTVG AEKY
Sbjct: 2 GWALHILSPNFISTSMQRRTKYNLNALSHDTAIGLIQHALDSGVQLAEVFVDTVGPAEKY 61
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q KL Q+FP ++ V KADSL+P VS ASI AKV RDR ++ W F E E+ ++GSG
Sbjct: 62 QEKLKQQFPELEVTVRAKADSLFPTVSAASICAKVARDRIVKNWKFLENLEDTEMDYGSG 121
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRSG 194
YP DP+TK WL + IFG+P VRFSW T + V V W+ ED S++S
Sbjct: 122 YPNDPKTKEWLAQNLDPIFGYPQFVRFSWSTAQLILESKAVPVHWDD---TEDGPSQQSA 178
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 235
K L S SKR +F RKLE +T
Sbjct: 179 KSLLSYFTRKVSPSKRTPH----------RFFYERKLETVT 209
>gi|260794677|ref|XP_002592334.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
gi|229277552|gb|EEN48345.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
Length = 303
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 115/179 (64%), Gaps = 3/179 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW + I+ P +S ML ++K NLN +SHD+AIGLI R L+ G+ L EVY+DTVGDA K
Sbjct: 90 MGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTVGDATK 149
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF--EETAENMHRNF 132
YQ KL FP + V+ KAD+ +P+VS ASI AKV RDR ++GW F E+ + R F
Sbjct: 150 YQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNTISRKF 209
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSS 190
GSGYP DPETK WL +FGFP VRFSW T + D V V W+ ++ DE ++
Sbjct: 210 GSGYPSDPETKKWLASMVEPVFGFPQFVRFSWSTASKILDDKAVPVNWDDEDEDEKAAT 268
>gi|402904417|ref|XP_003915042.1| PREDICTED: ribonuclease H2 subunit A [Papio anubis]
gi|355703198|gb|EHH29689.1| Ribonuclease H2 subunit A [Macaca mulatta]
gi|380808814|gb|AFE76282.1| ribonuclease H2 subunit A [Macaca mulatta]
gi|383415189|gb|AFH30808.1| ribonuclease H2 subunit A [Macaca mulatta]
gi|384944794|gb|AFI36002.1| ribonuclease H2 subunit A [Macaca mulatta]
Length = 300
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 118/178 (66%), Gaps = 2/178 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E ++ ++GSG
Sbjct: 151 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWKFVEKLQDSDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
YP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE D ED R
Sbjct: 211 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE-DSTPEDQEGLR 267
>gi|355755510|gb|EHH59257.1| Ribonuclease H2 subunit A [Macaca fascicularis]
Length = 325
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 118/178 (66%), Gaps = 2/178 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 116 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 175
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E ++ ++GSG
Sbjct: 176 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWKFVEKLQDSDTDYGSG 235
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
YP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE D ED R
Sbjct: 236 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE-DSTPEDQEGLR 292
>gi|346986447|ref|NP_001231373.1| ribonuclease H2 subunit A [Sus scrofa]
Length = 301
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 120/185 (64%), Gaps = 6/185 (3%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ +R W F E +++ ++GSG
Sbjct: 151 QERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRRSG 194
YP DP+TKAWL H +FGFP VRFSW T S K+ +V WE + + + G
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILEKEAEDVTWEDSQTGD-----QEG 265
Query: 195 KRQLK 199
R++K
Sbjct: 266 LRKIK 270
>gi|405952554|gb|EKC20351.1| Ribonuclease H2 subunit A [Crassostrea gigas]
Length = 299
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
AS+ W V+++ P +S ML+++K NLN ISHD AI L+ R L +G + EVY+DTVG
Sbjct: 86 ASDMMAWIVELLSPTFISNGMLSRSKYNLNAISHDCAIRLVQRALELGANIAEVYVDTVG 145
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
D EKYQAKL FP+I+ V+KKADSLYP+VS ASI AKV RDR L W F+E
Sbjct: 146 DPEKYQAKLRNLFPNIQITVAKKADSLYPIVSAASICAKVCRDRALSKWQFQEKITVHED 205
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 179
+GSGYPGDP+TK +L+D +FGFP VRF W T + K V+V W
Sbjct: 206 GYGSGYPGDPKTKRFLSDSMDKVFGFPQFVRFGWSTASVMLQKSAVDVQW 255
>gi|332252995|ref|XP_003275638.1| PREDICTED: ribonuclease H2 subunit A [Nomascus leucogenys]
Length = 299
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 118/178 (66%), Gaps = 2/178 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 150 QAWLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSG 209
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
YP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE D ED R
Sbjct: 210 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE-DSAPEDQEGLR 266
>gi|442754225|gb|JAA69272.1| Putative ribonuclease hi [Ixodes ricinus]
Length = 357
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 109/172 (63%), Gaps = 1/172 (0%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
S GW V++I P + MLN +K +LN ISHDSAI LI + LN G+ +TEVY+DTVG
Sbjct: 87 SESLGWMVEVISPTVICNHMLNMSKYSLNAISHDSAISLIKQALNDGVCVTEVYVDTVGP 146
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
EKYQAKL FP IK V+KKAD +P+VS ASI AKV RDR ++ W F E
Sbjct: 147 PEKYQAKLQDTFPDIKITVAKKADPTFPIVSAASICAKVARDRAIQTWRFPEGLNFNPEE 206
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESD 182
+GSGYP DP TK +L H +FGFPSLVRFSW T +D V W+ D
Sbjct: 207 YGSGYPNDPATKKFLAAHVDNVFGFPSLVRFSWSTAEKLLEDNAATVSWDED 258
>gi|34329831|gb|AAQ64005.1| ribonuclease H2 [Homo sapiens]
Length = 299
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 114/166 (68%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 90 GWALDVLSPNLISTSMLGWVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 150 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSG 209
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 180
YP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE
Sbjct: 210 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>gi|403302260|ref|XP_003941780.1| PREDICTED: ribonuclease H2 subunit A [Saimiri boliviensis
boliviensis]
Length = 300
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QKRLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQFVEKLQDLDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 187
YP DP+TK WL +H +FGFP VRFSW T + K+ +V+WE D ED
Sbjct: 211 YPNDPKTKVWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAKDVIWE-DSAPED 262
>gi|91091718|ref|XP_966789.1| PREDICTED: similar to ribonuclease hi large subunit [Tribolium
castaneum]
gi|270001067|gb|EEZ97514.1| hypothetical protein TcasGA2_TC011359 [Tribolium castaneum]
Length = 306
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 114/173 (65%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A+ GW V++I P + ML++ K +LN++S D+AI LI L G+ L+ VY+DTVG
Sbjct: 94 ANRKMGWGVEVIAPNSICNSMLSRQKYSLNQVSMDAAINLIKMALKGGVNLSHVYVDTVG 153
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
EKYQA L FP++ V+KKADS +P+VS ASI AKVTRD L+GW F E + H
Sbjct: 154 PPEKYQAYLKSLFPNVGVTVAKKADSTFPIVSAASICAKVTRDYALKGWGFGEGLQAGHE 213
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 183
FGSGYPGDP TK +L +++ +FG+P LVRFSW T + K+ V WE +E
Sbjct: 214 EFGSGYPGDPNTKKFLQNYRDPVFGYPHLVRFSWSTASEALKEAYHVDWEENE 266
>gi|55648379|ref|XP_512415.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Pan troglodytes]
gi|410226906|gb|JAA10672.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410251426|gb|JAA13680.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410287834|gb|JAA22517.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410328555|gb|JAA33224.1| ribonuclease H2, subunit A [Pan troglodytes]
Length = 299
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 113/166 (68%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L G+ +T+V++DTVG E Y
Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALYQGVNVTQVFVDTVGMPETY 149
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E ++ ++GSG
Sbjct: 150 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDTDYGSG 209
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 180
YP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE
Sbjct: 210 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>gi|355716672|gb|AES05686.1| ribonuclease H2, subunit A [Mustela putorius furo]
Length = 299
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 111/166 (66%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+AIGL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAIGLVQYALDQGVKVAQVFVDTVGPPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E + + ++GSG
Sbjct: 151 QEQLQQHFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWHFVEDLQGLDADYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWE 180
YP DP+TKAWL H +FGFP VRFSW T S + E VLWE
Sbjct: 211 YPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILETEAEGVLWE 256
>gi|312208153|pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
gi|312208156|pdb|3P56|D Chain D, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
Length = 299
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 114/166 (68%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KA +LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 150 QARLQQSFPGIEVTVKAKAAALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSG 209
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 180
YP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE
Sbjct: 210 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>gi|48145799|emb|CAG33122.1| JUNB [Homo sapiens]
Length = 299
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 114/166 (68%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 150 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSG 209
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 180
YP DP+TKAWL +H +FGFP VRFSW T + K+ + +WE
Sbjct: 210 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDGIWE 255
>gi|109123571|ref|XP_001109423.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Macaca mulatta]
Length = 300
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 117/178 (65%), Gaps = 2/178 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E ++ ++GSG
Sbjct: 151 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWKFVEKLQDSDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
YP DP+TK WL +H +FGFP VRFSW T + K+ +V+WE D ED R
Sbjct: 211 YPNDPKTKVWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE-DSTPEDQEGLR 267
>gi|344244502|gb|EGW00606.1| Ribonuclease H2 subunit A [Cricetulus griseus]
Length = 312
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 108/151 (71%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+DI+ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 91 GWALDILSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQGVNVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L QRFP ++ V KADSL+PVVS ASI AKV RD+ ++ W F E+ +++ ++GSG
Sbjct: 151 QARLQQRFPGMEVTVKAKADSLFPVVSAASIFAKVARDQAVKNWQFVESLQDLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
YP DP+TKAWL H +FGFP VRFSW T
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241
>gi|301771221|ref|XP_002921051.1| PREDICTED: ribonuclease H2 subunit A-like [Ailuropoda melanoleuca]
gi|281353030|gb|EFB28614.1| hypothetical protein PANDA_009861 [Ailuropoda melanoleuca]
Length = 299
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGPPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L +RFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F ET +++ ++GSG
Sbjct: 151 QERLQERFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWHFVETLQDLDADYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWE 180
YP DP+TK WL H +FGFP VRFSW T S + E VLWE
Sbjct: 211 YPNDPKTKVWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVLWE 256
>gi|194213064|ref|XP_001495257.2| PREDICTED: ribonuclease H2 subunit A-like [Equus caballus]
Length = 299
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVKVAQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KADSLYPVVS ASI AKV RD+ ++ W F E ++ ++GSG
Sbjct: 151 QQRLQQRFPGIEVTVKAKADSLYPVVSAASICAKVARDQAVKNWKFVEKLQDSDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 187
YP DP+TKAWL H +FGFP VRFSW T S K+ +V+W+ D + ED
Sbjct: 211 YPNDPKTKAWLRRHVEPVFGFPQFVRFSWRTAQSILEKEAEDVVWD-DSVAED 262
>gi|428176594|gb|EKX45478.1| ribonuclease H2 large subunit [Guillardia theta CCMP2712]
Length = 241
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/186 (49%), Positives = 122/186 (65%), Gaps = 20/186 (10%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
SN GW V+++ ++LS ML + NLN ISHD+AIG+I +VL L +V++DTVGD
Sbjct: 56 SNVLGWLVEVLSAKQLSGSMLQRAPYNLNAISHDTAIGMIRKVLAANFNLKKVFVDTVGD 115
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
E+Y++KLS FPSI+F V KKADSL+PVVS ASI AKVTRDR +R W F+ET + +
Sbjct: 116 PERYESKLSSLFPSIEFAVRKKADSLFPVVSAASICAKVTRDRCVRDWQFKETGVSFSTD 175
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL-----WESDEMDE 186
+GSGYP +P+ +FG+P LVRFSW T K I+E WE+DEM+E
Sbjct: 176 YGSGYPSEPQ-----------VFGYPDLVRFSWSTT----KKIIETQGESFEWEADEMEE 220
Query: 187 DVSSRR 192
D S +
Sbjct: 221 DQSQSK 226
>gi|359322070|ref|XP_003639769.1| PREDICTED: ribonuclease H2 subunit A-like [Canis lupus familiaris]
Length = 299
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKSWHFVEKLQDLDADYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWE 180
YP DP+TKAWL H +FGFP VRFSW T S + E V+WE
Sbjct: 211 YPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVIWE 256
>gi|301171214|ref|NP_001180335.1| ribonuclease H2, subunit A [Xenopus laevis]
gi|71051192|gb|AAH99334.1| Unknown (protein for MGC:116529) [Xenopus laevis]
Length = 302
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 130/227 (57%), Gaps = 10/227 (4%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
+S+ GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ LTEV++DTVG
Sbjct: 86 SSDYIGWALHILSPNVISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVG 145
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
AEKYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W F E +
Sbjct: 146 PAEKYQEKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWKFVEDLGELDA 205
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
++GSGYP DP+TK WL+ H +FG+P VRFSW T + + + DE D+
Sbjct: 206 DYGSGYPNDPKTKEWLSRHLDPVFGYPQFVRFSWSTAQTILDNKATPVAWGDEDDDSAGG 265
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ S L FS+ K S+ +F + R L+ L F
Sbjct: 266 KSSTPSVLSF----FSAPKDVSQPQSH------RFFQERHLQPLLEF 302
>gi|346466461|gb|AEO33075.1| hypothetical protein [Amblyomma maculatum]
Length = 339
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 122/186 (65%), Gaps = 3/186 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+ V++I P +S +ML+ +K NLN ISHDSAIGLI R G+ + EVY+DTVG EK
Sbjct: 124 LGFMVELISPVVISERMLHVSKYNLNSISHDSAIGLIRRAQEEGVNVAEVYVDTVGPPEK 183
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQ KL FP IK V+KKAD+ YP+VS ASI AKV RDR +R W F E + ++GS
Sbjct: 184 YQKKLEDCFPGIKVTVAKKADATYPIVSAASICAKVARDRAIRSWQFPEGIDVKPEDYGS 243
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRS 193
GYP DP TK +L ++ ++FGFP +VRFSW T +D ++W DE DE+ + +++
Sbjct: 244 GYPNDPVTKKFLAENTDLVFGFPGIVRFSWSTAEKLLEDHAAPIVW--DEEDEEGAGKQN 301
Query: 194 GKRQLK 199
G ++
Sbjct: 302 GMASIQ 307
>gi|320168268|gb|EFW45167.1| ribonuclease H2 [Capsaspora owczarzaki ATCC 30864]
Length = 385
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 117/171 (68%), Gaps = 2/171 (1%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A++ G++V +I P+++S+ ML + K NLN +SHD+A+ L+ R L+ G+ + +V++DTVG
Sbjct: 167 ANDFMGFSVCVISPQDISSSMLRRAKYNLNALSHDTAMSLVQRALDDGVNIAKVFVDTVG 226
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET-AENMH 129
AE YQ KLS+RFP I+F VS KADSL+P+VS ASI AKV RD L W F E +
Sbjct: 227 TAETYQEKLSERFPGIEFKVSAKADSLFPIVSAASICAKVVRDHVLDIWQFSEPHGSTIG 286
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 179
R+FG GYP DP TK WL + +FGFP +VRFSWGTC + D V V W
Sbjct: 287 RDFGCGYPSDPVTKQWLQTNMDSVFGFPGVVRFSWGTCKNILIDRAVNVTW 337
>gi|49115760|gb|AAH73515.1| LOC443655 protein, partial [Xenopus laevis]
Length = 305
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 130/227 (57%), Gaps = 10/227 (4%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
+S+ GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ LTEV++DTVG
Sbjct: 89 SSDYIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVG 148
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
AEKYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W F E +
Sbjct: 149 PAEKYQEKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWKFVEDLGELDA 208
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
++GSGYP DP+TK WL+ H +FG+P VRFSW T + + + DE D+
Sbjct: 209 DYGSGYPNDPKTKEWLSRHLDPVFGYPQFVRFSWSTAQTILDNKATPVAWGDEDDDSAGG 268
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ S L FS+ K S+ +F + R L+ L F
Sbjct: 269 KSSTPSVLSF----FSAPKDVSQPQSH------RFFQERHLQPLLEF 305
>gi|297703733|ref|XP_002828781.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A [Pongo
abelii]
Length = 313
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 119/179 (66%), Gaps = 3/179 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 103 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 162
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENMHRNFGS 134
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E+ ++ + ++GS
Sbjct: 163 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSXYTDYGS 222
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDEDVSSRR 192
GYP DP+TKAWL +H +FGFP VRFSW T + + E V+WE D ED R
Sbjct: 223 GYPQDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKGAEDVIWE-DSAPEDQEGLR 280
>gi|328783769|ref|XP_396289.3| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Apis
mellifera]
Length = 350
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 130/205 (63%), Gaps = 13/205 (6%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAVD+I P +S M + K +LNE+S +SAI L V+ G +TE+Y+DT+G EK
Sbjct: 140 IGWAVDVISPNVISNSMYRRVKTSLNEVSMNSAIELAKLVIEAGARITEIYVDTIGKPEK 199
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQAKL Q FP IK V+KKADS YP+VS ASI AKV+RD +R W F E + + +GS
Sbjct: 200 YQAKLEQIFPDIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQFLEGS--ITTEYGS 257
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDEMDEDVSSRRS 193
GYP DPETK WL+++ +FGFP +VRFSW T + D + V WE EM EDV R
Sbjct: 258 GYPNDPETKKWLSENVDPVFGFPHIVRFSWSTAEKILESDALSVEWE--EM-EDV--RNP 312
Query: 194 GKRQL-----KLSDIGFSSSKRRSE 213
G++++ K D F S K+R +
Sbjct: 313 GEQKISSFFAKSPDKSFKSQKKRHQ 337
>gi|84370099|ref|NP_001033623.1| ribonuclease H2 subunit A [Bos taurus]
gi|110816412|sp|Q2TBT5.1|RNH2A_BOVIN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|83638655|gb|AAI09683.1| Ribonuclease H2, subunit A [Bos taurus]
gi|296485915|tpg|DAA28030.1| TPA: ribonuclease H2 subunit A [Bos taurus]
gi|440902072|gb|ELR52915.1| Ribonuclease H2 subunit A [Bos grunniens mutus]
Length = 299
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDE 183
YP DP+TKAWL H +FGFP VRFSW T S + E V WE E
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILESEAEDVKWEDSE 259
>gi|255710295|gb|ACU30967.1| ribonuclease HI [Ochlerotatus triseriatus]
Length = 235
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 111/158 (70%), Gaps = 2/158 (1%)
Query: 10 WASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
+A+ GWAV++I P ++ ML + K +LNE+S DSAIGLI + ++ G+ + EVY+DTV
Sbjct: 19 YATESIGWAVEVISPNDICMSMLRRTKRSLNEVSMDSAIGLINKAIDAGVNIAEVYVDTV 78
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G EKYQAKL Q FP K V+KKADS YP+VS ASI AKV+RD L+ W F E E
Sbjct: 79 GPPEKYQAKLKQLFPKFKITVAKKADSTYPIVSAASICAKVSRDHALKVWTFREGLEE-G 137
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
NFGSGYPGDP TK +L ++ ++FG+P LVRFSW T
Sbjct: 138 INFGSGYPGDPTTKNFLGTYE-LVFGYPRLVRFSWSTA 174
>gi|260781395|ref|XP_002585798.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
gi|229270848|gb|EEN41809.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
Length = 301
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 112/172 (65%), Gaps = 4/172 (2%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW + I+ P +S ML ++K NLN +SHD+AIGLI R L+ G+ L EVY+DTVGDA K
Sbjct: 90 MGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTVGDATK 149
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF--EETAENMHRNF 132
YQ KL FP + V+ KAD+ +P+VS ASI AKV RDR ++GW F E+ ++ R F
Sbjct: 150 YQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNSISRKF 209
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDE 183
GSGYP DPETK WL +FGFP VRFSW T + D V V W SDE
Sbjct: 210 GSGYPSDPETKKWLASMVEPVFGFPQFVRFSWSTASKILDDKAVPVNW-SDE 260
>gi|426228912|ref|XP_004008539.1| PREDICTED: ribonuclease H2 subunit A [Ovis aries]
Length = 299
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDE 183
YP DP+TKAWL H +FGFP VRFSW T S + E V WE E
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILETEAEDVKWEDSE 259
>gi|156542709|ref|XP_001603515.1| PREDICTED: ribonuclease H2 subunit A-like [Nasonia vitripennis]
Length = 350
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 129/222 (58%), Gaps = 14/222 (6%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+AVD I P ++ M + K +LNE+S +SAI LI + ++ G+ + E+Y+DTVG EK
Sbjct: 140 MGYAVDAISPNYIANCMYRRTKTSLNEVSMNSAISLIKQAIDSGVFVAEIYVDTVGKPEK 199
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQAKL FP IK VV+KKADS YP+VS ASI AKV+RD LR W F ET EN +GS
Sbjct: 200 YQAKLEGIFPGIKIVVAKKADSTYPIVSAASICAKVSRDHALRAWQFRET-EN-ESEYGS 257
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRS 193
GYP DP TK+WL+ + IFGFP LVRFSW T + V V WE E D +
Sbjct: 258 GYPNDPVTKSWLSSNVDPIFGFPQLVRFSWSTAEKILESKAVAVEWEDPEEDSSAPESKI 317
Query: 194 GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 235
K F+ S +++E S + R F R L T
Sbjct: 318 SKY--------FAPSPAKTKE---SARKRHNFFTNRCLTNAT 348
>gi|440800045|gb|ELR21088.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 292
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 113/173 (65%), Gaps = 2/173 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
G+ I+ +LS KML +K NLN+ISHD+A LI R L G+ L EVY+DTVGD +Y
Sbjct: 74 GFEACILSAEDLSNKMLRASKYNLNQISHDTAAELIARALTKGVPLKEVYVDTVGDPGRY 133
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q LS++FP + VSKKADSL+P+VS ASIVAKV RD+ LR W F+E R FGSG
Sbjct: 134 QENLSRKFPRLAITVSKKADSLFPIVSAASIVAKVIRDQCLRTWKFKEKGVEFSREFGSG 193
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWESDEMDE 186
YP DP TK WL +FG+P+L+RFSW T + + D V WE+D D+
Sbjct: 194 YPADPFTKQWLEGSLDKLFGYPTLIRFSWATTDNMLEDHDAHAVAWEADVNDD 246
>gi|328774049|gb|EGF84086.1| hypothetical protein BATDEDRAFT_8789 [Batrachochytrium
dendrobatidis JAM81]
Length = 290
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 116/169 (68%), Gaps = 5/169 (2%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA + P+++S ML + K NLN ++HD+ I LI VL+ G+ + EVY+DTVG E
Sbjct: 123 IGWAATVCSPQDISESMLRRAKYNLNALAHDTTINLIQSVLDQGVNIQEVYVDTVGSPES 182
Query: 75 YQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA-ENMHRNF 132
YQAKL++RFP I K VVSKKADSL+P+VS ASI AKVTRD L W F E ++ R F
Sbjct: 183 YQAKLAKRFPKIGKIVVSKKADSLFPIVSAASICAKVTRDAILCNWEFVEPGIDSTQRAF 242
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI--VEVLW 179
GSGYP DP+T AWL H +FGFP +VRFSW T T+ ++ V+VLW
Sbjct: 243 GSGYPADPKTVAWLKKHLDPVFGFPRIVRFSWST-TAKLLEMQGVDVLW 290
>gi|321469942|gb|EFX80920.1| hypothetical protein DAPPUDRAFT_230884 [Daphnia pulex]
Length = 307
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 116/179 (64%), Gaps = 7/179 (3%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWAV++I P + M + K +LNE+SHDSAIGLI + L++ +T V++DTVG EKY
Sbjct: 93 GWAVEVISPNSICNNMFKRLKHSLNEVSHDSAIGLIRKALSLEANITSVFVDTVGPPEKY 152
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET------AENMH 129
QAKLS FP IK VSKKADSL+PVVS ASI AKV RD+ L W F+E+ AE+
Sbjct: 153 QAKLSALFPGIKITVSKKADSLFPVVSAASICAKVARDKALSTWKFKESPFISLKAESQE 212
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI-VEVLWESDEMDED 187
+GSGYPGDP TK +L + +FGFP LVRFSW T K V V WE E E+
Sbjct: 213 LKWGSGYPGDPTTKKFLAQNIDGVFGFPQLVRFSWSTSEQILKTKGVTVEWEDTEEQEN 271
>gi|410950548|ref|XP_003981966.1| PREDICTED: ribonuclease H2 subunit A [Felis catus]
Length = 299
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 111/166 (66%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG + Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQFALDQGVKVAQVFVDTVGLPDTY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E + + ++GSG
Sbjct: 151 QERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWHFVEKLQGLDADYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWE 180
YP DP+TKAWL H +FGFP VRFSW T S + E V+WE
Sbjct: 211 YPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVMWE 256
>gi|380020624|ref|XP_003694182.1| PREDICTED: ribonuclease H2 subunit A-like [Apis florea]
Length = 350
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 130/205 (63%), Gaps = 13/205 (6%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAVD+I P +S M + K +LNE+S +SAI L V+ G +TE+Y+DTVG EK
Sbjct: 140 IGWAVDVISPNVISNSMYRRVKTSLNEVSMNSAIELAKLVIEAGARITEIYVDTVGKPEK 199
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQAKL Q FP IK V+KKADS YP+VS ASI AKV+RD +R W F E + + +GS
Sbjct: 200 YQAKLEQIFPDIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQFLEGS--ITTEYGS 257
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDEMDEDVSSRRS 193
GYP DPETK WL+++ +FGFP +VRFSW T + D + V WE EM++ +R
Sbjct: 258 GYPNDPETKKWLSENVDPVFGFPHIVRFSWSTAEKILESDALSVEWE--EMED---ARIP 312
Query: 194 GKRQL-----KLSDIGFSSSKRRSE 213
G++++ + D F S K+R +
Sbjct: 313 GEQKISSFFARSPDKSFKSQKKRHQ 337
>gi|71031853|ref|XP_765568.1| ribonuclease H1 large subunit [Theileria parva strain Muguga]
gi|68352525|gb|EAN33285.1| ribonuclease H1 large subunit, putative [Theileria parva]
Length = 277
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 8/174 (4%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
PFG ++I P+ +S KML ++K NLNEISHD+AI +I VL+ G L EVY+D VG
Sbjct: 87 PFGVVAEVITPQYISYKMLQRDKYNLNEISHDTAISIIRHVLDHGYNLKEVYIDAVGTVN 146
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
KY+AKLS+ FP I F V +KADS+YP VS ASIVAKV RD ++ W F+ EN+ G
Sbjct: 147 KYEAKLSKLFPKIHFSVREKADSIYPTVSAASIVAKVIRDNIIKNWKFDFEVENI----G 202
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF---KDIVEVLWESDEM 184
SGYPGDP TK +LT++ IFGFP +VR+SW T SH D VEV W +E+
Sbjct: 203 SGYPGDPYTKDFLTNNMDKIFGFPDIVRYSWST-ASHLLNGPDGVEVEWYDEEI 255
>gi|198428317|ref|XP_002127465.1| PREDICTED: similar to ribonuclease H2, large subunit [Ciona
intestinalis]
Length = 292
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 132/228 (57%), Gaps = 22/228 (9%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
AS GW + I+ P +S ML ++K NLN ISHD+AI LI L +G+ +TEVY+DTVG
Sbjct: 86 ASEYIGWMIHILSPAYISTSMLGRSKYNLNSISHDTAIDLIRSALKLGVEVTEVYVDTVG 145
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
+ Y KL + FPSIKF V KKADS YPVVS ASI AKV RD+ ++ W F E + +
Sbjct: 146 PPQTYAEKLKKIFPSIKFTVEKKADSKYPVVSAASICAKVCRDKAVKEWRFRENPDTDTK 205
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVS 189
+GSGYP DP TK WL ++ IFGFPS VRFSW T + ++ V V W D DE+
Sbjct: 206 -YGSGYPADPVTKVWLRNNVDRIFGFPSFVRFSWSTTSKLLENEAVPVHWADD--DEE-- 260
Query: 190 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
SS++ + G R +F K++++T+F
Sbjct: 261 ----------------SSNEPITSYFSKKGNSRHQFFTENKMKRVTNF 292
>gi|432095927|gb|ELK26843.1| Ribonuclease H2 subunit A [Myotis davidii]
Length = 299
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 111/166 (66%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVNVAQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQFVEKLQDLDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWE 180
YP DP+TKAWL + +FGFP VRFSW T S + E V WE
Sbjct: 211 YPNDPKTKAWLRKNVEPVFGFPQFVRFSWRTAQSILEKEAEGVTWE 256
>gi|89268632|emb|CAJ82403.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
Length = 301
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 131/226 (57%), Gaps = 11/226 (4%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
S+ GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ L EV+LDTVG
Sbjct: 87 SDYIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGP 146
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
AEKYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W F E +
Sbjct: 147 AEKYQDKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWKFVEDLGDPDAE 206
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSR 191
+GSGYP DP+TK WL+ H +FG+P VRFSW T + + + DE D+
Sbjct: 207 YGSGYPNDPKTKDWLSRHLDPVFGYPQFVRFSWSTTQTILGNKAAPVSWGDEDDD----- 261
Query: 192 RSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
SG + S + F S+ + + + +S +F + R L+ L F
Sbjct: 262 -SGGKSSTPSVLSFFSAPKDASQPQSH-----RFFQERNLKPLLEF 301
>gi|116284049|gb|AAH29252.1| Rnaseh2a protein [Mus musculus]
Length = 254
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 106/154 (68%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 169
YP DP+TKAWL H +FGFP VRFSW T +
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQA 244
>gi|45361019|ref|NP_989146.1| ribonuclease H2, subunit A [Xenopus (Silurana) tropicalis]
gi|38494390|gb|AAH61614.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
Length = 301
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 131/226 (57%), Gaps = 11/226 (4%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
S+ GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ L EV+LDTVG
Sbjct: 87 SDYIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGP 146
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
AEKYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W F E +
Sbjct: 147 AEKYQDKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKEWKFVEDLGDPDAE 206
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSR 191
+GSGYP DP+TK WL+ H +FG+P VRFSW T + + + DE D+
Sbjct: 207 YGSGYPNDPKTKDWLSRHLDPVFGYPQFVRFSWSTTQTILGNKAAPVSWGDEDDD----- 261
Query: 192 RSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
SG + S + F S+ + + + +S +F + R L+ L F
Sbjct: 262 -SGGKSSTPSVLSFFSAPKDASQPQSH-----RFFQERNLKPLLEF 301
>gi|431898011|gb|ELK06718.1| Microtubule-associated serine/threonine-protein kinase 1 [Pteropus
alecto]
Length = 1773
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 109/163 (66%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVNVAQVFVDTVGLPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QERLQQCFPDIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQFVEKLQDLDIDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL 178
YP DP+TKAWL H IFGFP VRFSW T S + EV+
Sbjct: 211 YPNDPKTKAWLRKHVEPIFGFPQFVRFSWRTAQSILEKEAEVV 253
>gi|325974872|gb|ADZ47886.1| ribonuclease H2 subunit A [Capra hircus]
Length = 286
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 111/169 (65%), Gaps = 1/169 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DT G E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTGGLPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDE 183
YP DP+TKAWL H +FGFP VRFSW T S + E V WE E
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILETEAEDVKWEDSE 259
>gi|157136849|ref|XP_001656938.1| ribonuclease hi large subunit [Aedes aegypti]
gi|108880967|gb|EAT45192.1| AAEL003510-PA [Aedes aegypti]
Length = 335
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Query: 10 WASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
+A GWAV++I P ++ ML + K +LNE+S DSAIGLI + + G+ + EVY+DTV
Sbjct: 119 YAVESIGWAVEVIAPNDICMSMLRRTKRSLNEVSMDSAIGLIRKAIEAGVNIAEVYVDTV 178
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G EKYQAKL Q FP K V+KKADS YP+VS ASI AKV+RD L+ W F E E
Sbjct: 179 GPPEKYQAKLKQIFPKFKITVAKKADSTYPIVSAASICAKVSRDHALKVWSFREGLEP-G 237
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
NFGSGYPGDP TK +L + ++FGFP LVRFSW T
Sbjct: 238 INFGSGYPGDPVTKNFLGTY-DLVFGFPRLVRFSWST 273
>gi|340380420|ref|XP_003388720.1| PREDICTED: ribonuclease H2 subunit A-like [Amphimedon
queenslandica]
Length = 320
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 134/224 (59%), Gaps = 9/224 (4%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW I+ P LS ML ++K NLN ISHD+AI LI +VL+ G+ LTEVY+DTVG E
Sbjct: 104 LGWKACILSPNYLSNCMLRRSKYNLNSISHDTAIDLIRKVLSDGVKLTEVYVDTVGKPES 163
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQ+KL FP +K V+KKADSL+P+VS ASI AKV RD L W F E + ++FG
Sbjct: 164 YQSKLESIFPQLKVTVTKKADSLFPIVSAASICAKVIRDACLTEWKFTEGDDCYSKSFGC 223
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDEMDEDVSSRRS 193
GY D T W+ D +FGFP+LVRFSW T + + + + V W D+ DE+ +++
Sbjct: 224 GYTSDTTTINWMKDCIDPVFGFPTLVRFSWSTASKMLESNGLLVKWPDDDEDEE---QKA 280
Query: 194 GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
++ L F +K + + + + R + E RKLE + HF
Sbjct: 281 NCPKISLF---FGKAKTNGDGPKPAKRHR--YFEERKLEAVDHF 319
>gi|395850804|ref|XP_003797965.1| PREDICTED: ribonuclease H2 subunit A [Otolemur garnettii]
Length = 300
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 115/178 (64%), Gaps = 1/178 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A LI L+ G+ +++V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATALIQYALDQGVKVSQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L Q FP IK V KADSLY VVS ASI AKV RD+ +R W F E ++ ++GSG
Sbjct: 151 QKRLQQCFPGIKVTVKAKADSLYSVVSAASICAKVARDQAVRNWRFVERLQDFDADYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
YP DP+TKAWL H +FGFP VRFSW T + K+ +V+WE + + S+ R
Sbjct: 211 YPNDPKTKAWLKKHVEPVFGFPQFVRFSWRTAMAILEKEAEDVVWEDLTVGDQESAGR 268
>gi|158297564|ref|XP_317779.3| AGAP007741-PA [Anopheles gambiae str. PEST]
gi|157015256|gb|EAA12465.3| AGAP007741-PA [Anopheles gambiae str. PEST]
Length = 342
Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 127/215 (59%), Gaps = 5/215 (2%)
Query: 10 WASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
+A GWAV+ I P +S ML + K +LNE+S DSAIGLI ++ G+ + EVY+DTV
Sbjct: 125 FAKTALGWAVEAISPNVISMCMLRRTKHSLNEVSMDSAIGLINSAIDAGVNIAEVYVDTV 184
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G EKYQAKL FP K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 185 GPPEKYQAKLKAIFPKFKITVAKKADSTYPIVSAASIAAKVTRDHALKVWKFRERPNEEV 244
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMD-EDV 188
+FGSGYPGDP TK +L + ++FGFP LVRFSW T + + + DE D +D
Sbjct: 245 TSFGSGYPGDPTTKKFLGEI-DLVFGFPRLVRFSWSTAGNALEKKAYDMEFEDETDAKDA 303
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRC 223
G ++L F++SK + + + RC
Sbjct: 304 EKASYGSKKLSKY---FATSKNENRKRHEYFRERC 335
>gi|84999888|ref|XP_954665.1| ribonuclease h1 large subunit [Theileria annulata]
gi|65305660|emb|CAI73985.1| ribonuclease h1 large subunit, putative [Theileria annulata]
Length = 277
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 117/173 (67%), Gaps = 6/173 (3%)
Query: 13 NPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
+PFG ++I P+ +S KML + K NLNEISHD+AI +I VL+ G L EVY+D VG
Sbjct: 86 HPFGVVAEVITPQYISYKMLQREKYNLNEISHDTAISIIRHVLSHGYNLKEVYIDAVGTV 145
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
KY++KLS+ FP I+F V +KADS+YP VS ASIVAKV RD ++ W F+ EN+
Sbjct: 146 NKYESKLSKMFPKIQFSVREKADSIYPTVSAASIVAKVIRDNIIKTWKFDFEVENI---- 201
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWESDE 183
GSGYPGDP TK +LT + IFGFP +VRFSW T ++ + VEV W +E
Sbjct: 202 GSGYPGDPYTKDFLTKNMDKIFGFPDIVRFSWSTASNLLNGSESVEVDWYDEE 254
>gi|427795471|gb|JAA63187.1| Putative ribonuclease hi, partial [Rhipicephalus pulchellus]
Length = 325
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 118/186 (63%), Gaps = 6/186 (3%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+ V++I P +S ML+ K +LN ISHDSAIGLI + L+ G+ +T+VY+DTVG EK
Sbjct: 113 LGFMVEVIPPSVISGHMLDVTKYSLNAISHDSAIGLIRQALDDGVQVTQVYVDTVGPPEK 172
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQ KL FP IK V+KKAD+ YP+VS ASI AKV RD ++ W F E +GS
Sbjct: 173 YQEKLQALFPDIKVTVAKKADATYPIVSAASICAKVARDHAIQSWEFPEGINVKAEEYGS 232
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRS 193
GYP DP TK +L ++ +FGFPSLVRFSW T +D V+W DE+ ++ +S
Sbjct: 233 GYPNDPVTKKFLLENMDTVFGFPSLVRFSWSTAEKLLEDNAAAVMW-----DEEDNAEQS 287
Query: 194 GKRQLK 199
G ++
Sbjct: 288 GMASIQ 293
>gi|312379086|gb|EFR25480.1| hypothetical protein AND_09149 [Anopheles darlingi]
Length = 346
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 10 WASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
+A+ GWAV+ I P +S ML + K +LNE+S +SAIGLI + G+ + EVY+DTV
Sbjct: 128 YATEALGWAVEAISPNTISMSMLRRTKCSLNEVSMNSAIGLIHAAIEAGVNIAEVYVDTV 187
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G EKYQAKL FP K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 188 GPPEKYQAKLKDIFPKFKITVAKKADSTYPIVSAASIAAKVTRDHALKVWQFRERPNEEE 247
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
+FGSGYPGDP TK +L + ++FGFP LVRFSW T
Sbjct: 248 NSFGSGYPGDPTTKKFLGEV-DLVFGFPRLVRFSWST 283
>gi|193709059|ref|XP_001946925.1| PREDICTED: ribonuclease H2 subunit A-like [Acyrthosiphon pisum]
Length = 312
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAV II P +S + K +LNEISH++AIGLI RVL+ G+ + EV++DTVG EK
Sbjct: 103 LGWAVHIISPTTISNCSFRRQKCSLNEISHNAAIGLIQRVLDRGVNICEVFVDTVGPPEK 162
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENMHRNFG 133
YQ KL FP +K VSKKADSL+P+VS ASI AKVTRD L+ W F E E++ N+G
Sbjct: 163 YQEKLLSIFPQLKITVSKKADSLFPIVSAASICAKVTRDAALKNWKFIERPGEDIDSNWG 222
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
SGYP DP TK +L + +FGFPS+VRFSW T
Sbjct: 223 SGYPNDPVTKEYLKKNIDPVFGFPSIVRFSWST 255
>gi|357625234|gb|EHJ75743.1| hypothetical protein KGM_02725 [Danaus plexippus]
Length = 276
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 110/159 (69%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
K A + GW ++I P +S M + K +LNE+S +SAI LI + + +G +TEVY+DT
Sbjct: 58 KEAVDNVGWMAEVISPNYISNSMYKRAKHSLNEVSMNSAISLIKKTIELGGNITEVYVDT 117
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQA+L + FP IK V+KKADS+YP+VS ASIVAKVTRD L+ W F E E
Sbjct: 118 VGPPEKYQARLKEIFPDIKITVAKKADSIYPIVSAASIVAKVTRDHALKVWEFPEGLEIN 177
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
H++FGSGYPGDP TK ++ + IFG+P LVRFSW T
Sbjct: 178 HKDFGSGYPGDPLTKKFIREQIDRIFGYPLLVRFSWSTA 216
>gi|403220433|dbj|BAM38566.1| ribonuclease [Theileria orientalis strain Shintoku]
Length = 284
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 116/176 (65%), Gaps = 7/176 (3%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
PFG ++I P+ +S KML +NK NLNEISH++AI +I V+++G L EVY+D VG
Sbjct: 86 PFGMIAEVITPQYISYKMLQRNKYNLNEISHETAISIIRHVISLGYNLKEVYIDAVGTVS 145
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
KYQ+KLS+ FP I F V +KADS+YP VS ASI+AKV RD +R W + +N G
Sbjct: 146 KYQSKLSKLFPKISFSVREKADSIYPTVSAASIIAKVIRDNMIRAWRLDPIV----KNIG 201
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLW-ESDEMDE 186
SGYPGDP TK +LT + +FGFP +VRFSW T + + + V V W + D DE
Sbjct: 202 SGYPGDPSTKEFLTGNMDKVFGFPDIVRFSWSTAKNLLEGSEGVPVEWYDPDPEDE 257
>gi|395513066|ref|XP_003760751.1| PREDICTED: ribonuclease H2 subunit A [Sarcophilus harrisii]
Length = 307
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 110/169 (65%), Gaps = 1/169 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+DI+ P +S M + K NLN +SHD+A+ L+ L+ G+ +T+V++DTVG A+KY
Sbjct: 91 GWALDILSPNLISTSMQRRAKYNLNSLSHDTAMALVQLALDQGVRVTQVFVDTVGPADKY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q KL +RFP ++ V KADSL+PVVS ASI AKV RD ++ W F E +++ ++GSG
Sbjct: 151 QQKLKERFPEVEVTVRPKADSLFPVVSAASICAKVARDHAVKRWKFLEDLKDLKMDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDE 183
YP DP+TK WL+ +FGFP VRFSW T V V WE E
Sbjct: 211 YPNDPKTKEWLSQCLDPVFGFPQFVRFSWSTAQLILDGRAVPVRWEDSE 259
>gi|389584587|dbj|GAB67319.1| ribonuclease H1 large subunit [Plasmodium cynomolgi strain B]
Length = 279
Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
PFGW + ++ P+++SAKML K K NLNEISHD+AI +I V+N G LTEV++DTVG A
Sbjct: 77 PFGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIIDHVINRGCNLTEVFVDTVGKAS 136
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD ++ W +EE N+ + FG
Sbjct: 137 VYEEKLKKLFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEPIVNIDKGFG 196
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPS 158
SGYPGDP TK +L ++ +FGFP+
Sbjct: 197 SGYPGDPITKNFLKNNFDSVFGFPT 221
>gi|410925260|ref|XP_003976099.1| PREDICTED: ribonuclease H2 subunit A-like [Takifugu rubripes]
Length = 310
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 106/156 (67%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A + GWA+ ++ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG
Sbjct: 86 AKSYVGWALQVLSPNTISNSMLQRTKYNLNALSHDTAIGLVQHALDCGVQLKEVFVDTVG 145
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
A+KY+ KLS+ FP I V KADSL+P+VS ASI AKV RD ++ W F E +
Sbjct: 146 PADKYEDKLSKIFPGIAVTVRPKADSLFPIVSAASICAKVARDFAVKHWRFGEDLGEVDA 205
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
++GSGYP DP+TKAWL + +FG+P LVRFSW T
Sbjct: 206 DYGSGYPSDPKTKAWLLRYLDPVFGYPQLVRFSWST 241
>gi|149037818|gb|EDL92178.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
gi|149037821|gb|EDL92181.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
Length = 282
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 103/146 (70%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG E Y
Sbjct: 91 GWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + ++GSG
Sbjct: 151 QARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVR 161
YP DP+TKAWL H +FGFP VR
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVR 236
>gi|170049569|ref|XP_001857534.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
gi|167871354|gb|EDS34737.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
Length = 334
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 110/160 (68%), Gaps = 2/160 (1%)
Query: 10 WASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
+A+ GWAV++I P ++S ML ++K +LNE+S DSAIGLI + + G+ + EVY+DTV
Sbjct: 118 FATESIGWAVEVISPNDISMSMLRRSKRSLNEVSMDSAIGLIHKAIEAGVNIAEVYVDTV 177
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G EKYQAKL FP+ K V+KKADS Y +VS ASI AKV+RD L+ W F E +
Sbjct: 178 GPPEKYQAKLKLIFPNFKITVAKKADSTYLIVSAASICAKVSRDHALKVWKFRE-GTDPE 236
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 169
FGSGYPGDP TK +L D +FGFP LVRFSW T ++
Sbjct: 237 VKFGSGYPGDPVTKKFLGDFDR-VFGFPRLVRFSWSTASN 275
>gi|126322781|ref|XP_001362490.1| PREDICTED: ribonuclease H2 subunit A-like [Monodelphis domestica]
Length = 304
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 105/151 (69%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+DI+ P +S M + K NLN +SHD+A+ L+ L+ G+ +T+V++DTVG A+KY
Sbjct: 91 GWALDILSPNLISNSMQRRAKYNLNSLSHDTAMALVQLALDQGVKVTQVFVDTVGPADKY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q KL +RFP ++ V KADSL+PVVS ASI AKV RD+ ++ W F E ++ ++GSG
Sbjct: 151 QQKLQERFPELEVTVRPKADSLFPVVSAASICAKVARDQVVKRWKFLEDLGDLKMDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
YP DP+TK WL+ +FGFP VRFSW T
Sbjct: 211 YPNDPKTKEWLSQCLDPVFGFPQFVRFSWST 241
>gi|350411556|ref|XP_003489389.1| PREDICTED: ribonuclease H2 subunit A-like [Bombus impatiens]
Length = 334
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 104/152 (68%), Gaps = 2/152 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAVD+I P ++ M + K +LNE+S +SAI L V+ G +TE+Y+DTVG +K
Sbjct: 124 IGWAVDVISPNIIANNMYRRVKTSLNEVSMNSAIELAKLVIEAGANITEIYVDTVGVPQK 183
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQA+L Q FP IK V+KKADS YP+VS ASI AKV RD L+ W F E E + +GS
Sbjct: 184 YQARLEQIFPDIKITVAKKADSTYPIVSAASICAKVLRDHALKAWQFRE--ELITTEYGS 241
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYP DP+TK WL+++ +FGFP +VRFSW T
Sbjct: 242 GYPNDPDTKKWLSENVDPVFGFPHIVRFSWST 273
>gi|340729627|ref|XP_003403099.1| PREDICTED: ribonuclease H2 subunit A-like [Bombus terrestris]
Length = 334
Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 104/152 (68%), Gaps = 2/152 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAVD+I P ++ M + K +LNE+S +SAI L V+ G +TE+Y+DTVG +K
Sbjct: 124 IGWAVDVISPNIIANNMYRRVKTSLNEVSMNSAIELAKLVIEAGANITEIYVDTVGVPQK 183
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQA+L Q FP IK V+KKADS YP+VS ASI AKV RD L+ W F E E + +GS
Sbjct: 184 YQARLEQIFPDIKITVAKKADSTYPIVSAASICAKVLRDHALKAWQFRE--ELITTEYGS 241
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYP DP+TK WL+++ +FGFP +VRFSW T
Sbjct: 242 GYPNDPDTKKWLSENVDPVFGFPHIVRFSWST 273
>gi|322799751|gb|EFZ20956.1| hypothetical protein SINV_11176 [Solenopsis invicta]
Length = 353
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA++ I P +S M + K++LNE+S SA LI + G+ + E+Y+DTVG E
Sbjct: 142 IGWAIEAISPNIISNSMYRRTKVSLNEVSMISATNLIQGAIEAGVNVAEIYVDTVGKPES 201
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQA+L FP IK VV+KKAD+ YP+VS ASI AKVTRD +R W F E EN+ +GS
Sbjct: 202 YQARLKGVFPGIKIVVAKKADATYPIVSAASICAKVTRDHAIRAWRFRE-GENIETQYGS 260
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYP DP TK WL+ + +FGFP LVRFSW T
Sbjct: 261 GYPTDPVTKKWLSTNVDRVFGFPQLVRFSWST 292
>gi|383859304|ref|XP_003705135.1| PREDICTED: ribonuclease H2 subunit A-like [Megachile rotundata]
Length = 334
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 110/170 (64%), Gaps = 3/170 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW +D I P +S M ++K +LNE+S SAI L + G+ ++E+Y+DTVG EK
Sbjct: 124 MGWCIDAISPNIISNSMYRRSKTSLNEVSMLSAIELTKMAIEAGVWVSEIYVDTVGKPEK 183
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQA+L + FP IK V+KKADS YP+VS ASI AKV+RD +R W F E + + + +GS
Sbjct: 184 YQARLEEIFPGIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQFREGS--VGKAYGS 241
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDE 183
GYP DPETK WL ++ +FGFP +VRFSW T ++ + V WE E
Sbjct: 242 GYPNDPETKNWLIENVDPVFGFPRIVRFSWSTAEKILEEKALSVEWEDTE 291
>gi|209877739|ref|XP_002140311.1| ribonuclease HI large subunit [Cryptosporidium muris RN66]
gi|209555917|gb|EEA05962.1| ribonuclease HI large subunit, putative [Cryptosporidium muris
RN66]
Length = 286
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 122/206 (59%), Gaps = 21/206 (10%)
Query: 13 NPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
N FGW + I+ P+ LS +ML K K NLNEISH +AI LI VL G+ +T +Y+DTVG
Sbjct: 79 NQFGWGIYILLPQYLSCQMLKKQKYNLNEISHTAAINLIKSVLQHGVNVTHIYIDTVGPP 138
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW-------IFEETA 125
E Y+ KL FPSI V+ KADSLYP VSGASI+AKV RD L W ++
Sbjct: 139 ESYKKKLKLLFPSINITVTPKADSLYPCVSGASILAKVERDHFLSNWWSFPGHDRYDHNG 198
Query: 126 ENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDE 183
N+ GSGYPGDP+TK +L H +FGFP++VRFSW T K+ V V W
Sbjct: 199 NNLSIYEQGSGYPGDPKTKQFLKQIFHKVFGFPNIVRFSWSTADQIIEKEGVRVKW---T 255
Query: 184 MDEDVSSRRSGKRQLKLSDIGFSSSK 209
+DED S + S I FS++K
Sbjct: 256 LDEDNSEQ---------SKISFSTNK 272
>gi|358053836|dbj|GAA99968.1| hypothetical protein E5Q_06671 [Mixia osmundae IAM 14324]
Length = 367
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 3 SEAALPKWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT 62
S AAL +S+ WAV ++ P ++S ML K NLN SHD+ I LI V+ +G +
Sbjct: 150 SGAALSDPSSDNLEWAVRVMSPFDISRGMLRKTPYNLNAQSHDATIMLIRDVIQMGYNIA 209
Query: 63 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 122
E Y+DTVG A +YQ LS FP+IKF V+ KADS+YP+V ASI AKVTRD L GW +
Sbjct: 210 EAYIDTVGIASQYQDFLSGVFPTIKFTVTSKADSIYPIVGAASIAAKVTRDSVLEGWTYR 269
Query: 123 ET------AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIV 175
AE+ +FGSGYPGDP T AWL + +FGFP++ RFSW T + K
Sbjct: 270 NALPAMLVAESDDSDFGSGYPGDPRTVAWLERNMDPVFGFPAVARFSWATVKNMLEKKAA 329
Query: 176 EVLWESDE 183
V W SDE
Sbjct: 330 HVRW-SDE 336
>gi|56754417|gb|AAW25396.1| SJCHGC03278 protein [Schistosoma japonicum]
Length = 289
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 120/201 (59%), Gaps = 9/201 (4%)
Query: 18 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 77
V +I P ++ KML+++K +LN ISHDSAI LI VL+ GI L EVY+DTVG AE Y+A
Sbjct: 64 VVHVISPVYITEKMLDRSKTSLNVISHDSAIQLIQTVLDSGINLVEVYVDTVGKAEHYEA 123
Query: 78 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RNFGSGY 136
KL FP +K V KAD YP+VS ASI AKVTRDR L+ W EE GSGY
Sbjct: 124 KLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRILQMWPKEERGNVPDGTGLGSGY 183
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI-VEVLWESDEMDEDV------- 188
PGDP TK++L +FGFPSLVR SW T ++ + V V WE DE E+V
Sbjct: 184 PGDPVTKSYLRACLDPVFGFPSLVRSSWSTASTLLEQHGVSVKWEDDETHEEVVEAKKLA 243
Query: 189 SSRRSGKRQLKLSDIGFSSSK 209
R K KLS+ + SK
Sbjct: 244 KKREYSKGTCKLSNFFNAQSK 264
>gi|115896475|ref|XP_001199108.1| PREDICTED: ribonuclease H2 subunit A-like [Strongylocentrotus
purpuratus]
Length = 324
Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 102/156 (65%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
AS+ G+ V+I+ P ++ ML +NK +LN +S DSAIGL+ L G+ + EVY+DTVG
Sbjct: 109 ASDYMGYKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVG 168
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
DA+KYQ KL FP + V KADS +P+VS ASI AKVTRDR GW F ET +
Sbjct: 169 DAKKYQDKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFVETNDFDKE 228
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
N+GSGYP DP TK WL + +FGF VRFSW T
Sbjct: 229 NYGSGYPSDPATKKWLAGNVDPVFGFSQFVRFSWST 264
>gi|156082533|ref|XP_001608751.1| ribonuclease H [Babesia bovis T2Bo]
gi|154796000|gb|EDO05183.1| ribonuclease H, putative [Babesia bovis]
Length = 264
Score = 166 bits (419), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/189 (48%), Positives = 117/189 (61%), Gaps = 9/189 (4%)
Query: 13 NPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
PF ++I PR +S KML + NLN ISHDSAI LI ++ G +TEVY+D VG A
Sbjct: 65 TPFAMCAEVITPRYISYKMLQREAYNLNNISHDSAIALIRYYISQGFNITEVYVDAVGPA 124
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
KY+A L+Q FP IK VV+ KADS++PVVS ASIVAKV RD + W F+++ E + +
Sbjct: 125 AKYEAMLTQLFPKIKCVVANKADSIFPVVSAASIVAKVIRDNIIDSW-FKDSPERV--DV 181
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD---IVEVLWESDEMDEDVS 189
GSGYPGDP TK +L+ H +FGF S VR SW T S D V W + +E+ S
Sbjct: 182 GSGYPGDPVTKQFLSSHLDRLFGFSSFVRVSWSTAKSILDDETRAVPFEWYDPDSEEEES 241
Query: 190 SRRSGKRQL 198
R RQL
Sbjct: 242 DR---ARQL 247
>gi|302836379|ref|XP_002949750.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
nagariensis]
gi|300265109|gb|EFJ49302.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
nagariensis]
Length = 308
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 133/227 (58%), Gaps = 11/227 (4%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A+ GW I+ + +S ML ++K++LN ++ D+ +I L G + +VY+DTVG
Sbjct: 88 ANTSVGWVAHIMSAQHISHNMLGRDKVSLNSLAFDATCHVIRTALESGASVKQVYVDTVG 147
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
DA+++ +LS+ FP I F V KADSLYP+VS ASI+AKV RD++L I A +
Sbjct: 148 DADRHSERLSRAFPGISFTVCPKADSLYPIVSAASIIAKVIRDKSL---IDCRQALGLQG 204
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWESDEMDEDV 188
G+GYPGD T AWL +H H + GFP LVR SW TC + + + V +E+D+ + +
Sbjct: 205 EVGTGYPGDATTVAWLKEHIHPVLGFPPLVRHSWETCARMLEPPEAISVNFEADDAADGL 264
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 235
+ S +++L G + +E+SG GR F +RKL+++
Sbjct: 265 GTSGSSQQRLNFVRPGGAGV------VETSGLGRHTFFRSRKLQRVA 305
>gi|307188511|gb|EFN73248.1| Ribonuclease H2 subunit A [Camponotus floridanus]
Length = 334
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA++ I P ++ M + K++LNE+S SAI LI + G+ + E+Y+DTVG E
Sbjct: 123 IGWAIEAISPNVIANSMYRRTKVSLNEVSMVSAIKLIQGAIEAGVNVAEIYVDTVGKPES 182
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQA+L FP +K VV+KKAD+ YP+VS ASI AKV+RD LR W F E +++ +GS
Sbjct: 183 YQARLKGVFPGVKIVVAKKADATYPIVSAASICAKVSRDHALRAWRFRE-GDSIGTEYGS 241
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYP DP TK WL+++ +FGFP LVRFSW T
Sbjct: 242 GYPTDPVTKNWLSENVDAVFGFPQLVRFSWST 273
>gi|332030069|gb|EGI69894.1| Ribonuclease H2 subunit A [Acromyrmex echinatior]
Length = 332
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA+++I P ++ M + KI+LNEIS SA LI + G+ + E+Y+DTVG E
Sbjct: 123 IGWAIEVISPNVIANNMYRRTKISLNEISMISATNLIREAIEAGVNVAEIYVDTVGKPES 182
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQ +L FPSIK +V+KKAD+ YP+VS ASI AKV+RD +R W F E + + +GS
Sbjct: 183 YQTRLKSIFPSIKIIVAKKADATYPIVSAASICAKVSRDHAIRAWRFRED-DCIETEYGS 241
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDE 183
GYP DP TK WL+ + +FGFP LVRFSW T + + V WE E
Sbjct: 242 GYPNDPVTKNWLSMNVDQVFGFPQLVRFSWSTAEQILESKALTVEWEETE 291
>gi|307198751|gb|EFN79554.1| Ribonuclease H2 subunit A [Harpegnathos saltator]
Length = 337
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 104/170 (61%), Gaps = 1/170 (0%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAV+ I P ++ M + K++LNE S SA LI + G+ + EVY+DTVG E
Sbjct: 124 IGWAVEAISPNVIANSMYRRTKVSLNETSMVSATELIKAAIEAGVNVAEVYVDTVGKPET 183
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQA+L FP +K VV+KKADS YP+VS ASI AKV+RD +R W F E +GS
Sbjct: 184 YQARLKAVFPGVKVVVAKKADSTYPIVSAASICAKVSRDHAIRAWRFREVDVAFPSEYGS 243
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDE 183
GYP DP TK WL+ + +FGFP LVRFSW T + + + V WE E
Sbjct: 244 GYPTDPVTKKWLSANVDGVFGFPQLVRFSWSTAEQILQSNALAVEWEESE 293
>gi|72007775|ref|XP_782683.1| PREDICTED: ribonuclease H2 subunit A-like [Strongylocentrotus
purpuratus]
Length = 324
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 101/156 (64%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
AS+ G+ V+I+ P ++ ML +NK +LN +S DSAIGL+ L G+ + EVY+DTVG
Sbjct: 109 ASDYMGYKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVG 168
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
DA+KYQ KL FP + V KADS +P+VS ASI AKVTRDR GW F E +
Sbjct: 169 DAKKYQDKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFVEKNDIDKE 228
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
N+GSGYP DP TK WL + +FGF VRFSW T
Sbjct: 229 NYGSGYPSDPATKKWLAGNVDPVFGFSQFVRFSWST 264
>gi|429328791|gb|AFZ80551.1| ribonuclease H1 large subunit, putative [Babesia equi]
Length = 288
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 117/189 (61%), Gaps = 8/189 (4%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
PFG D++ P+ +S KML + K NLNE+SHD+ I +I V++ G L E+Y+DTVG
Sbjct: 87 PFGLIADVVTPQYISYKMLQRTKYNLNEMSHDTEISIIRHVISAGYNLKEIYVDTVGVES 146
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
KY+AKL FP+I V+KKADSL+PVVS ASIVAKV RD ++ W + N G
Sbjct: 147 KYEAKLKNLFPNIHIKVAKKADSLFPVVSAASIVAKVVRDNIIKCW----SNSYGTSNIG 202
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL---WESD-EMDEDVS 189
SGYPGD T +L+++ H IFGFP +VRFSW T + D W D E + D
Sbjct: 203 SGYPGDAYTIRFLSENLHKIFGFPDIVRFSWRTASDMLNDQKRSAIFNWYDDLEEENDEL 262
Query: 190 SRRSGKRQL 198
S+++ K+ L
Sbjct: 263 SKKTVKKNL 271
>gi|348677951|gb|EGZ17768.1| hypothetical protein PHYSODRAFT_545238 [Phytophthora sojae]
Length = 809
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 112/170 (65%), Gaps = 2/170 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW V +I E+S KM + NLNE+S D+AI LI V G ++ +V++DTVGD
Sbjct: 60 LGWIVRLISAAEISDKM-QRQTSNLNEMSRDAAIQLINEVQKKGAVVKKVFVDTVGDPRW 118
Query: 75 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
YQ+ L++ F +I+F V KKADSL+ VVS ASI AKVTRDR + W +E A + +FG
Sbjct: 119 YQSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRVISDWKWESPALDFPTDFG 178
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 183
SGYP DP+TKAWLT H +F FP+++RFSWGT F+ V+V W D+
Sbjct: 179 SGYPSDPKTKAWLTTHMDQVFVFPNIIRFSWGTVEPFFEKAVKVEWPHDK 228
>gi|392594942|gb|EIW84266.1| ribonuclease HII [Coniophora puteana RWD-64-598 SS2]
Length = 298
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 103/162 (63%), Gaps = 7/162 (4%)
Query: 12 SNPF--GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
S+P+ GWAV ++ P+ +SA ML INLN+ + D+ I LI VL GI L+E+Y+D +
Sbjct: 86 SDPYNLGWAVRVLSPQAISAGMLRNPPINLNKQAQDATILLIQEVLQKGIQLSEIYVDAL 145
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET----- 124
GD +KY A LS FP I F V KKADSL+ +V AS+ AKVTRD L W++EE+
Sbjct: 146 GDCDKYTALLSSIFPGIAFTVRKKADSLFKIVGAASVGAKVTRDSCLENWVYEESTSQGD 205
Query: 125 AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
E GSGYP DP T+AWL FGFPSLVRFSW T
Sbjct: 206 GEGWGNTIGSGYPSDPTTQAWLKSSVDPTFGFPSLVRFSWTT 247
>gi|330791509|ref|XP_003283835.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
gi|325086221|gb|EGC39614.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
Length = 289
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 104/158 (65%), Gaps = 6/158 (3%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+ VD+I P LS KML K I+LN ISH+SA+GLI VL+ GI + E+YLDTVG
Sbjct: 78 LGFEVDVISPEILSEKMLLKKPISLNVISHESAMGLIRSVLSKGINVQELYLDTVGTPAT 137
Query: 75 YQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA-----ENM 128
YQA L FP I K VVSKKADSLYP+VS ASI AKV RD + F++ + +
Sbjct: 138 YQAMLKNHFPEISKIVVSKKADSLYPIVSAASICAKVIRDHEITSKNFDDLEIQDEDDQL 197
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
FGSGYP DP TK WLT ++ +FG+PS +RFSW T
Sbjct: 198 STEFGSGYPSDPVTKFWLTKNRDKVFGYPSFIRFSWST 235
>gi|281202692|gb|EFA76894.1| hypothetical protein PPL_09646 [Polysphondylium pallidum PN500]
Length = 1257
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 123/195 (63%), Gaps = 14/195 (7%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+ D+ +P LS KML+K +++L+ ISH SA LI +VL+ G + +Y+DTVG K
Sbjct: 1054 LGFVSDVNEPSMLSEKMLSKQQVSLDSISHGSAFNLIQQVLDKGYNIESLYVDTVGPPAK 1113
Query: 75 YQAKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN------ 127
Y+AK+ FPSIK VVSKKADSLYP+VS ASI AKV RDR ++ FE+ N
Sbjct: 1114 YEAKIRVAFPSIKNVVVSKKADSLYPIVSAASICAKVIRDRIIKATDFEKYGSNASGQNA 1173
Query: 128 -MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDEMD 185
++ N GSGYP DP TK+WL +++ +FG+P +VRFSW T ++ + D V W + +
Sbjct: 1174 PINTNIGSGYPSDPATKSWLRNNRDKVFGYPDIVRFSWKTTSTAMQGDCYGVQWVNQQ-- 1231
Query: 186 EDVSSRRSGKRQLKL 200
S SGKR+ L
Sbjct: 1232 ---SPYFSGKRKRSL 1243
>gi|242010277|ref|XP_002425895.1| ribonuclease hi large subunit, putative [Pediculus humanus
corporis]
gi|212509871|gb|EEB13157.1| ribonuclease hi large subunit, putative [Pediculus humanus
corporis]
Length = 271
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 109/168 (64%), Gaps = 1/168 (0%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
++ GWAVD++ P +S +ML + K +LNEI+ +S I LI +L I L ++++DT+G
Sbjct: 105 NDKLGWAVDLLSPNLISNRMLQRKKYSLNEIAQNSTIKLIESLLEKNITLKDIFVDTIGP 164
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
A+KYQ KLS+ FP+ K V KAD LYPVV ASI AKV RD ++ W F E +
Sbjct: 165 ADKYQEKLSKLFPNSKVTVKSKADLLYPVVGAASICAKVIRDTAVQQWKFPEKI-TIDAE 223
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 179
FG+GYPGDP+TK +L + K +FGFP+LVRFSW T ++ V W
Sbjct: 224 FGTGYPGDPKTKKFLLESKDSVFGFPNLVRFSWSTSAKLLEEETLVEW 271
>gi|291229986|ref|XP_002734939.1| PREDICTED: RNase H family member (rnh-2)-like [Saccoglossus
kowalevskii]
Length = 303
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 128/228 (56%), Gaps = 13/228 (5%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A+ G+ ++++ P +S M + K +LN +S DSAI L+ + G + EVY+DTVG
Sbjct: 88 ANQVLGYKMEVLSPNIISNSMFRRTKCSLNTVSKDSAIKLLRLTIEEGANIKEVYVDTVG 147
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
DA KYQA L + FP ++ V+ KAD+ +P+VS ASI AKV RDR ++ W F E E
Sbjct: 148 DASKYQAYLKELFPDLEITVTPKADAKFPIVSAASICAKVCRDRAVKSWQFPEFDEINET 207
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVS 189
+GSGYP DP TK WL++ +FGFP VRFSW T ++ V V W+ DE D D
Sbjct: 208 PYGSGYPNDPATKQWLSNVMEPVFGFPRFVRFSWSTADKILEEKAVPVYWDDDE-DGDNG 266
Query: 190 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
++ + S + F SSK ++ + + R L Q+T F
Sbjct: 267 AKGTP------SVMSFFSSKDSDPRLK-----KHHYFNDRHLTQVTDF 303
>gi|358336633|dbj|GAA55095.1| ribonuclease H2 subunit A [Clonorchis sinensis]
Length = 296
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 113/187 (60%), Gaps = 2/187 (1%)
Query: 18 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 77
AV +I PR ++ ML + K +LN ISHD+AIGLI L+ G+ + EVY+DTVG AE Y+A
Sbjct: 72 AVRVISPRFITENMLGRCKTSLNVISHDAAIGLIQAALDKGVNVKEVYVDTVGKAEHYEA 131
Query: 78 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE-NMHRNFGSGY 136
KL FP +K V KAD YP+VS ASI AKVTRDR L+ W E + GSGY
Sbjct: 132 KLQTLFPKLKICVESKADDTYPIVSAASIFAKVTRDRLLQLWPMNERGLFSDSVPVGSGY 191
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRRSGK 195
PGDP TK +L +FGFPSLVR SW T + K V++ W+ DE E +
Sbjct: 192 PGDPLTKRYLRQCVDPVFGFPSLVRSSWSTAGAILEKSGVKITWDDDEDQEKAPDAKHAA 251
Query: 196 RQLKLSD 202
R+ L++
Sbjct: 252 RKRVLTE 258
>gi|299473412|emb|CBN77810.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 320
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 112/183 (61%), Gaps = 6/183 (3%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GW + +I RELS KM K +LN ISHD+A LI V G+ +T+VY+DTVGD Y
Sbjct: 111 GWVLRLISARELSDKMCRKVPYSLNVISHDAAAELIRAVQARGVKVTQVYVDTVGDPAFY 170
Query: 76 QAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM--HRNF 132
Q+KL + F IKFVV+KKADSLY S ASIVAKVTRDR + GW + E + R +
Sbjct: 171 QSKLEKEFGKGIKFVVAKKADSLYKTASAASIVAKVTRDRIVEGWQWSEPNLDFSEDRKY 230
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV--EVLWESDEMDEDVSS 190
GSGYPGD + K WL + +FGFP + RFSWGT K V WE +E DE+ +
Sbjct: 231 GSGYPGDEKCKKWLESNVDPVFGFPDICRFSWGTTKEILKGPTRKRVDWE-EEPDEEAAG 289
Query: 191 RRS 193
S
Sbjct: 290 MNS 292
>gi|388580955|gb|EIM21266.1| ribonuclease HII [Wallemia sebi CBS 633.66]
Length = 327
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 121/229 (52%), Gaps = 32/229 (13%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
S+ W+V ++ P+++SA ML K NLN SHD+ LI V+ G+ L VY+DTVG
Sbjct: 107 SDQLAWSVRVMSPQDISAGMLKKVPYNLNAQSHDATFSLINDVIAKGVQLEHVYVDTVGP 166
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM--- 128
A+ YQAKL FPSI F V+ KADSL+P+VS ASI AKVTRD + W F E N
Sbjct: 167 AKSYQAKLEAAFPSIGFTVASKADSLFPIVSAASIAAKVTRDAIIDNWSFLEPISNAISS 226
Query: 129 -------------------HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 169
GSGYPGDP T AWL ++ +FG P L RFSW T +
Sbjct: 227 SKKLKNEDSSVDVSEQQPEKMKLGSGYPGDPNTVAWLKNNLDDVFGLPQLARFSWSTVKN 286
Query: 170 HFK-DIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 217
+ + +V W MDED + +S +LSD S K + I S
Sbjct: 287 LLESNAHQVTW----MDEDENVYKS-----QLSDAPPSLKKLGVQPISS 326
>gi|169859580|ref|XP_001836428.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
gi|116502486|gb|EAU85381.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
Length = 308
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 101/156 (64%), Gaps = 4/156 (2%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+V +I P+ +S+ ML K NLN+ S D+ IGLI +V++ GI +TEVY+D +G+
Sbjct: 102 LGWSVRVIAPQAISSGMLKKPPTNLNKQSQDATIGLIRQVIDKGINVTEVYVDALGNTST 161
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH----R 130
Y+A LS FP I F V+ KADS + +V AS+ AKVTRD + W+FEE N +
Sbjct: 162 YEAYLSSLFPGIDFTVANKADSKFKIVGAASVAAKVTRDVCIEEWVFEEDGGNAKSKWSK 221
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GSGYP DP T+AWL + +FGFP +VRFSW T
Sbjct: 222 ALGSGYPSDPNTQAWLKNAVDPVFGFPKIVRFSWST 257
>gi|326431468|gb|EGD77038.1| ribonuclease [Salpingoeca sp. ATCC 50818]
Length = 421
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW V + P +S ML + K +LNE+SHD+ IGLI R L+ G+ L VY+DTVG
Sbjct: 189 MGWKVHSLSPNTISTGMLARQKYSLNELSHDTCIGLIRRCLDQGVNLEAVYVDTVGPDTV 248
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQAKL FP +K VSKKADS Y +VS ASI AKV RD L W E + +G
Sbjct: 249 YQAKLQGIFPQLKITVSKKADSKYVIVSAASICAKVVRDHVLSAWRHPERI-GANTEYGC 307
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 179
GYP DP+TKAWL + +FGFPS+VRFSW T + K V W
Sbjct: 308 GYPSDPKTKAWLRANIDKVFGFPSVVRFSWQTAQTLLDKHAAAVTW 353
>gi|399218230|emb|CCF75117.1| unnamed protein product [Babesia microti strain RI]
Length = 277
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
+ PFG+ +I P+ +S ML + K NLN+ISHDSA+ +I V++IG L VY+D VG
Sbjct: 87 VNKPFGFVAQLITPQHISTAMLREQKYNLNQISHDSALNIIRHVISIGYKLKSVYIDAVG 146
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
E Y+ K+ FP++K +++++ADS YP+VS ASI+AKV RDRT++ W E+++
Sbjct: 147 PTEAYKMKVKANFPNLKVIIAERADSTYPLVSAASIIAKVLRDRTVKAW---ESSDKYKL 203
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 180
FG GYP DP TK +L IFGFP +R SW T + + V W+
Sbjct: 204 PFGCGYPSDPLTKEYLKKSFDKIFGFPPHIRSSWATADAFLSKSLPVDWK 253
>gi|268559996|ref|XP_002637939.1| C. briggsae CBR-RNH-2 protein [Caenorhabditis briggsae]
Length = 297
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
+A+ + P +S+ ML ++K +LNE+SHD+AI LI + + E+ +DTVG Y
Sbjct: 87 AYAIRSLSPELISSSMLKRHKYSLNEVSHDAAIALIRDAFACNVNVVEIKVDTVGPKATY 146
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN-FGS 134
QAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F+E + N FGS
Sbjct: 147 QAKLERLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWEFKEENIKVPENGFGS 206
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDE 183
GYPGDP TK +L H IFGF SLVR SW T ++ K V WE DE
Sbjct: 207 GYPGDPNTKKFLQLSVHPIFGFCSLVRASWKTASAIVEKRCVPGYWEDDE 256
>gi|391332532|ref|XP_003740688.1| PREDICTED: ribonuclease H2 subunit A-like [Metaseiulus
occidentalis]
Length = 295
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 106/167 (63%), Gaps = 5/167 (2%)
Query: 16 GWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
GW + I P +S ML K+ + +LNE+SH++AI LI L G+ +TEVY+DTVG E
Sbjct: 92 GWHLVCISPVTISKSMLAKDNQRESLNELSHNAAIHLIRVTLRRGVRVTEVYVDTVGPPE 151
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
KY+AKL FP IK VSKKADSL+ VS ASI AKV RDR L+ W + E + G
Sbjct: 152 KYEAKLQALFPEIKITVSKKADSLFKCVSAASICAKVARDRALKSWSWREG--TTYEKIG 209
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 179
SGYPGDP TK +L D IFGFPS+ RFSW T K+ V+V W
Sbjct: 210 SGYPGDPVTKKFLRDSCDPIFGFPSVTRFSWSTAEDLLAKEHVKVQW 256
>gi|336383681|gb|EGO24830.1| hypothetical protein SERLADRAFT_361719 [Serpula lacrymans var.
lacrymans S7.9]
Length = 329
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 8/160 (5%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+V +I P+ +S+ ML NLN S D+ I LI V+ GI L+EVY+D +G
Sbjct: 101 LGWSVRVISPQAISSGMLRVPPTNLNRQSQDATILLIREVIQRGIQLSEVYVDALGTTTT 160
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN--- 131
Y+A LS FP I F V+ KADS + +V AS+ AKVTRD L GWIFEE+ N N
Sbjct: 161 YEAYLSSVFPGINFTVTTKADSKFKIVGAASVAAKVTRDACLEGWIFEESKGNKVVNSSS 220
Query: 132 -----FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
FGSGYP DP+T+AWL + FGFPS+VRFSW T
Sbjct: 221 TWTTEFGSGYPSDPKTQAWLKNSIDPTFGFPSVVRFSWTT 260
>gi|256078514|ref|XP_002575540.1| ribonuclease hi large subunit [Schistosoma mansoni]
gi|353232311|emb|CCD79666.1| putative ribonuclease hi large subunit [Schistosoma mansoni]
Length = 290
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 123/204 (60%), Gaps = 10/204 (4%)
Query: 18 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 77
V +I P ++ KML+K+K +LN ISHDSAI LI VL+ G+ L EVY+DTVG AE Y+
Sbjct: 64 VVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAEHYET 123
Query: 78 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RNFGSGY 136
KL FP +K V KAD YP+VS ASI AKVTRDR L+ W EE GSGY
Sbjct: 124 KLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRVLQMWPKEERGSVPEGTGLGSGY 183
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDV------- 188
PGDP TK++L +FGFPSLVR SW T +S + V V WE DE E+V
Sbjct: 184 PGDPVTKSYLRACMDPVFGFPSLVRSSWSTSSSLLDQHGVSVRWEDDETHEEVLQAKKLA 243
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRS 212
R K KLS+ F++++ +S
Sbjct: 244 RKREHSKGTCKLSNF-FNNAQSKS 266
>gi|384483740|gb|EIE75920.1| ribonuclease HII [Rhizopus delemar RA 99-880]
Length = 212
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAV +I PR++S ML + NLNE++HD+ I LI V+ + L E+Y+D VG +
Sbjct: 46 IGWAVYVISPRDISTNMLRRPVYNLNEMAHDATIKLIKEVVEKKLNLEEIYVDPVGPSAS 105
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA--ENMHRNF 132
Y+ KLS FP I V KAD+LYP+VS ASI AKVTRD+ ++ W++ E + + F
Sbjct: 106 YKKKLSSFFPGIAITVEPKADALYPIVSAASICAKVTRDQYVQNWVWTEPGFEGTVSKQF 165
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 179
GSGYP DP T W+ ++ FGFPS++RFSW T ++ + W
Sbjct: 166 GSGYPSDPNTIKWMDKNEDDFFGFPSIMRFSWKTISNRMNLTRNIEW 212
>gi|256078516|ref|XP_002575541.1| ribonuclease hi large subunit [Schistosoma mansoni]
gi|353232310|emb|CCD79665.1| putative ribonuclease hi large subunit [Schistosoma mansoni]
Length = 237
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 123/204 (60%), Gaps = 10/204 (4%)
Query: 18 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 77
V +I P ++ KML+K+K +LN ISHDSAI LI VL+ G+ L EVY+DTVG AE Y+
Sbjct: 11 VVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAEHYET 70
Query: 78 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RNFGSGY 136
KL FP +K V KAD YP+VS ASI AKVTRDR L+ W EE GSGY
Sbjct: 71 KLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRVLQMWPKEERGSVPEGTGLGSGY 130
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDV------- 188
PGDP TK++L +FGFPSLVR SW T +S + V V WE DE E+V
Sbjct: 131 PGDPVTKSYLRACMDPVFGFPSLVRSSWSTSSSLLDQHGVSVRWEDDETHEEVLQAKKLA 190
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRS 212
R K KLS+ F++++ +S
Sbjct: 191 RKREHSKGTCKLSNF-FNNAQSKS 213
>gi|66801163|ref|XP_629507.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
gi|74896782|sp|Q54D13.1|RNH2A_DICDI RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A
gi|60462898|gb|EAL61095.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
Length = 289
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 118/193 (61%), Gaps = 9/193 (4%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
+ D+I LS KML K I+LN ISH+SAIGLI VL G+ + E+YLDTVG +K
Sbjct: 82 LAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVGPPDK 141
Query: 75 YQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-----ETAENM 128
YQ L + FP I K +VSKKADSLYP+VS ASI AKV RD + F+ + E +
Sbjct: 142 YQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQDEQL 201
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI---VEVLWESDEMD 185
+FGSGYP DP +K WL ++ +FG+P+ +RFSW T + + V+ + E+D++
Sbjct: 202 STDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTTETAMRGACFGVDWVLENDKLK 261
Query: 186 EDVSSRRSGKRQL 198
+ ++ K++
Sbjct: 262 QHFQENQNDKKRF 274
>gi|312067297|ref|XP_003136676.1| ribonuclease HI large subunit [Loa loa]
Length = 303
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 113/175 (64%), Gaps = 4/175 (2%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
FG+A I + +SA ML + K +LN++SHD A L+ ++ I + EVY+DTVG
Sbjct: 93 FGYAHCSISAQMISAAMLGRTKCSLNKLSHDCATELLKLAIDNNINVVEVYVDTVGPKGP 152
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN-FG 133
YQA L ++FP ++ +VS+KAD+ +P+VS ASIVAKV RDR LR W F E N+ N +G
Sbjct: 153 YQAMLHKKFPDMQIIVSEKADAKFPIVSAASIVAKVKRDRALRNWTFPEGIINVPPNGYG 212
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWESDEMDE 186
SGYPGDP TK +L +FG+P+LVRFSW T H K V+ W+ E++E
Sbjct: 213 SGYPGDPNTKNFLLGAIDHVFGYPNLVRFSWKTAEVLLHGK-TVKCTWKCLEVNE 266
>gi|341896396|gb|EGT52331.1| hypothetical protein CAEBREN_16035 [Caenorhabditis brenneri]
gi|341900120|gb|EGT56055.1| CBN-RNH-2 protein [Caenorhabditis brenneri]
Length = 297
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
+A+ + P +S+ ML + K +LNE+SHD+AI LI LN + + E+ +DTVG Y
Sbjct: 87 AYALRALSPELISSSMLKRQKYSLNEVSHDAAIALIRDALNCNVNVVEIKVDTVGPKATY 146
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM-HRNFGS 134
QAKL + FP I V++KADSL+P+VS ASI AKVTRD L+ W F+E + FGS
Sbjct: 147 QAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDHRLKHWEFKEKNVKVPDAGFGS 206
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDE 183
GYPGDP TK +L + +FGF SLVR SW T ++ K V WE DE
Sbjct: 207 GYPGDPNTKKFLQLSVNPVFGFCSLVRSSWKTASTIVEKRCVPGYWEDDE 256
>gi|148673841|gb|EDL05788.1| mCG129830, isoform CRA_a [Mus musculus]
Length = 226
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 94/134 (70%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSG 210
Query: 136 YPGDPETKAWLTDH 149
YP DP+TKAWL H
Sbjct: 211 YPNDPKTKAWLRKH 224
>gi|308509890|ref|XP_003117128.1| CRE-RNH-2 protein [Caenorhabditis remanei]
gi|308242042|gb|EFO85994.1| CRE-RNH-2 protein [Caenorhabditis remanei]
Length = 323
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 110/179 (61%), Gaps = 2/179 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
+A+ + P +SA ML ++K +LNE+SHD+AI LI + + E+ +DTVG Y
Sbjct: 113 AYAIRSLSPELISASMLKRHKYSLNEVSHDAAIALIKDAFACNVNVVEIKVDTVGPKATY 172
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN-FGS 134
QAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F+E + N +GS
Sbjct: 173 QAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWQFKEKGIRIPENGYGS 232
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
GYPGDP TK +L IFGF SLVR SW T ++ K V WE DE + S++
Sbjct: 233 GYPGDPNTKKFLQLSVDPIFGFCSLVRASWKTASAIVEKRSVPGYWEDDEDEGKPQSKK 291
>gi|393910380|gb|EFO27394.2| ribonuclease HI large subunit [Loa loa]
Length = 305
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
FG+A I + +SA ML + K +LN++SHD A L+ ++ I + EVY+DTVG
Sbjct: 93 FGYAHCSISAQMISAAMLGRTKCSLNKLSHDCATELLKLAIDNNINVVEVYVDTVGPKGP 152
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN-FG 133
YQA L ++FP ++ +VS+KAD+ +P+VS ASIVAKV RDR LR W F E N+ N +G
Sbjct: 153 YQAMLHKKFPDMQIIVSEKADAKFPIVSAASIVAKVKRDRALRNWTFPEGIINVPPNGYG 212
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
SGYPGDP TK +L +FG+P+LVRFSW T
Sbjct: 213 SGYPGDPNTKNFLLGAIDHVFGYPNLVRFSWKT 245
>gi|324509653|gb|ADY44053.1| Ribonuclease H2 subunit A [Ascaris suum]
Length = 298
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 100/152 (65%), Gaps = 1/152 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
+A ++ R +SA+ML + K +LNE+SH SAI LI L GI +TE+Y+DTVG Y
Sbjct: 94 AYAYRVLSARLISAEMLRRCKYSLNELSHTSAINLIKFALENGINVTEIYVDTVGPKSTY 153
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR-NFGS 134
QAKL FP+I V++KADSL+PVV ASI AKVTRD LR W+F E + +GS
Sbjct: 154 QAKLQAHFPNISITVTEKADSLFPVVGAASIAAKVTRDGVLRDWVFVEGDVTVPEGGYGS 213
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYPGDP T+ +L +FG+ SLVRFSW T
Sbjct: 214 GYPGDPNTRKFLVTSIDPVFGYSSLVRFSWKT 245
>gi|342319084|gb|EGU11035.1| Ribonuclease [Rhodotorula glutinis ATCC 204091]
Length = 346
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 99/158 (62%), Gaps = 9/158 (5%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 76
+AV ++ P ++S ML K NLN SHD I LI V+ G + + ++DTVG A YQ
Sbjct: 139 YAVTVMSPNDISMGMLRKVPYNLNAQSHDVTINLIREVVERGYKIKQCFVDTVGPAADYQ 198
Query: 77 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH------- 129
+KLS FP+I F V+ KAD+L+P+VS ASIVAKVTRDR L W F E
Sbjct: 199 SKLSSFFPTINFTVTSKADALFPIVSAASIVAKVTRDRILEEWCFAEPGVGEKGEGEEGE 258
Query: 130 --RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 165
R FGSGYP DP+T AWL D+ + IFGFP++ RFSW
Sbjct: 259 AVRVFGSGYPSDPKTVAWLQDNFNPIFGFPNVARFSWA 296
>gi|393221211|gb|EJD06696.1| hypothetical protein FOMMEDRAFT_165421 [Fomitiporia mediterranea
MF3/22]
Length = 336
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 101/156 (64%), Gaps = 4/156 (2%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+V +I P+ +S+ ML + NLN+ + ++ I LI VL+ GI+L+EVY+D +G+
Sbjct: 130 LGWSVRVISPQAISSGMLRRPPTNLNKQAENATITLIQEVLDRGIVLSEVYVDALGNTTT 189
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF-- 132
Y+ LS FP+I F V+ KADS + +V ASI AKVTRD + GW FEE + +
Sbjct: 190 YEKHLSNLFPNISFTVTAKADSKFKIVGAASIAAKVTRDAWITGWAFEEHESSPQYTWPD 249
Query: 133 --GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GSGYP DP+T+AWL D FG+PSL RFSWGT
Sbjct: 250 ERGSGYPSDPKTQAWLRDAVEPTFGYPSLARFSWGT 285
>gi|353241100|emb|CCA72936.1| related to 35 kDa ribonuclease H [Piriformospora indica DSM 11827]
Length = 379
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 109/184 (59%), Gaps = 19/184 (10%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN--IGILLTEVYLDTVGDA 72
GWAV +I P+ +S+ ML + +NLN S ++ I L+ +L+ + ++EVY+D +G A
Sbjct: 159 MGWAVSVISPQAVSSGMLRRPPVNLNTQSQNATIALLQSLLSEPYALDISEVYVDALGPA 218
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE---TAENMH 129
EKYQA L RF ++K V KADSLY +V AS+ AKVTRD + GW++EE T N
Sbjct: 219 EKYQAYLQSRFRTLKITVRNKADSLYKIVGAASVAAKVTRDYLVEGWVWEEATRTGSNAT 278
Query: 130 RN-------------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC-TSHFKDIV 175
RN GSGYP DP TKAW+ +H FGFP++ RFSW T+ +D
Sbjct: 279 RNEIDGEATWGKGTELGSGYPSDPNTKAWIAEHLDKTFGFPTIARFSWAPIRTAIERDGH 338
Query: 176 EVLW 179
+V W
Sbjct: 339 KVQW 342
>gi|336370925|gb|EGN99265.1| hypothetical protein SERLA73DRAFT_160724 [Serpula lacrymans var.
lacrymans S7.3]
Length = 313
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 99/162 (61%), Gaps = 10/162 (6%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV--YLDTVGDA 72
GW+V +I P+ +S+ ML NLN S D+ I LI V+ GI L+EV Y+D +G
Sbjct: 101 LGWSVRVISPQAISSGMLRVPPTNLNRQSQDATILLIREVIQRGIQLSEVGVYVDALGTT 160
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN- 131
Y+A LS FP I F V+ KADS + +V AS+ AKVTRD L GWIFEE+ N N
Sbjct: 161 TTYEAYLSSVFPGINFTVTTKADSKFKIVGAASVAAKVTRDACLEGWIFEESKGNKVVNS 220
Query: 132 -------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
FGSGYP DP+T+AWL + FGFPS+VRFSW T
Sbjct: 221 SSTWTTEFGSGYPSDPKTQAWLKNSIDPTFGFPSVVRFSWTT 262
>gi|17536263|ref|NP_495796.1| Protein RNH-2 [Caenorhabditis elegans]
gi|11387113|sp|Q9U6P6.1|RNH2A_CAEEL RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI
large subunit; Short=RNase HI large subunit; AltName:
Full=Ribonuclease HI subunit A
gi|6010657|gb|AAF01208.1|AF181619_1 putative ribonuclease H2 large subunit [Caenorhabditis elegans]
gi|15718212|emb|CAC70103.1| Protein RNH-2 [Caenorhabditis elegans]
Length = 297
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
+A+ + P +S ML + K +LNE+SH++AI LI L + + E+ +DTVG
Sbjct: 86 IAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTVGPKAT 145
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENMHRNFG 133
YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F E+ + +G
Sbjct: 146 YQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIKVPDAGYG 205
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
SGYPGDP TK +L +FGF SLVR SW T ++ K V WE DE + S+R
Sbjct: 206 SGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTIVEKRCVPGSWEDDEEEGKSQSKR 265
>gi|219111921|ref|XP_002177712.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410597|gb|EEC50526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 393
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 110/186 (59%), Gaps = 3/186 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+AV ++ E+S ML NLN++SHD+A G+I +L G+ + ++DTVG+A+
Sbjct: 172 MGFAVRVLHASEISRNMLRTESYNLNQMSHDAAAGIIEHLLEAGVQIGACFIDTVGNADH 231
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y+ +L Q FP I F V KAD+ YP S S+VAK RDR + + + E + FGS
Sbjct: 232 YKRRLQQEFPGIDFTVESKADAKYPPCSAGSVVAKNVRDRMMESFQYSEMSLKRDPKFGS 291
Query: 135 GYPGDPETKAWLTDHKHI-IFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
GYP DP K W+ ++++ +FG+P +VRFSW ++ VL+++D +DED
Sbjct: 292 GYPSDPVCKDWMENNQNCKVFGYPDVVRFSWNPAKKALERNAASVLFQADIIDEDEEGEY 351
Query: 193 S-GKRQ 197
GK+Q
Sbjct: 352 CIGKKQ 357
>gi|50551451|ref|XP_503199.1| YALI0D23661p [Yarrowia lipolytica]
gi|49649067|emb|CAG81399.1| YALI0D23661p [Yarrowia lipolytica CLIB122]
Length = 315
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 104/165 (63%), Gaps = 13/165 (7%)
Query: 15 FGWAVDIIDPRELSAKML---NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GW + +++S+ ML ++ NLN+ +HD+ + LI VL+ G+LLTE Y+DTVG
Sbjct: 107 LGWCTTSMTAQDISSAMLRPMSRGVYNLNDQAHDTTMALIQGVLDRGVLLTEAYIDTVGP 166
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
Y AKLS++FP IKF V+KKADSL+P+VS ASI AKVTRD L+ E
Sbjct: 167 PASYTAKLSKQFPHIKFTVTKKADSLFPIVSAASICAKVTRDMDLKSQDLSE------GT 220
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
+GSGYP DP+T WL H +FG+ +VRFSW T KD+VE
Sbjct: 221 WGSGYPSDPKTSVWLKSHVDQVFGWMPVVRFSWQTA----KDLVE 261
>gi|320582951|gb|EFW97168.1| ribonuclease HI large subunit [Ogataea parapolymorpha DL-1]
Length = 303
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 109/177 (61%), Gaps = 12/177 (6%)
Query: 16 GWAVDIIDPRELSAKMLNK---NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
GWA + R++S++ML INLNE +HD+ I LI VL+ + L EVY+DTVG
Sbjct: 108 GWATTTMTARDISSEMLKPRLIGNINLNEQAHDATIKLIQGVLDQKVNLKEVYVDTVGPP 167
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
+ YQ KLS RFP IK V+KKADSL+P+VS ASIVAKVTRD +L + + A+ +
Sbjct: 168 DSYQRKLSSRFPGIKVTVTKKADSLFPIVSTASIVAKVTRDCSL--YYLADGAD-----W 220
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVLWESDEMDED 187
GSGYP DP T WL + H +FG+ S+VRFSW T V ++WE + D
Sbjct: 221 GSGYPSDPRTSQWLNSNVHPVFGWNSMVRFSWQTSRDALVKSGAVPMVWEDELQTSD 277
>gi|426199388|gb|EKV49313.1| hypothetical protein AGABI2DRAFT_149543 [Agaricus bisporus var.
bisporus H97]
Length = 300
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 98/156 (62%), Gaps = 4/156 (2%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+V +I P+ +S+ M+ + INLN S ++ LI L G+ LTEVY+D +G+
Sbjct: 94 LGWSVRVICPQAISSGMMKRPPINLNVQSREATFLLIRETLAKGVQLTEVYVDALGNTTT 153
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN----MHR 130
Y+ LS+ FP I F V+ KADS + +V AS+ AKVTRD + W FEETA N ++
Sbjct: 154 YEKDLSELFPGITFTVTTKADSKFKIVGAASVAAKVTRDACIECWHFEETAGNDQVEWNK 213
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
FGSGYP DP T+ WL ++ FGFP +VRFSW T
Sbjct: 214 AFGSGYPSDPNTQIWLKENVEPTFGFPKVVRFSWTT 249
>gi|449540326|gb|EMD31319.1| hypothetical protein CERSUDRAFT_163191 [Ceriporiopsis subvermispora
B]
Length = 318
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
W+V ++ P+ +S ML + +NLN + + I LI VL GI L+E+Y+D +G+ E
Sbjct: 100 LAWSVRVLSPQGISNGMLRRPPVNLNRQAEQATILLIREVLQSGIQLSEIYVDALGNTET 159
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM------ 128
YQ LS++FP I V KADSL+ +V AS+ AKVTRD + GW FEE +
Sbjct: 160 YQTYLSKQFPGINITVKAKADSLFKIVGAASVAAKVTRDAWIEGWKFEEQRPQLVATPGA 219
Query: 129 ----------HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL 178
FGSGYP DP+TKAW++ FGFPS VRFSW T + +
Sbjct: 220 SLSTVLNPSWGEEFGSGYPSDPKTKAWISKSLEPTFGFPSFVRFSWTTVKNELDKSAHAV 279
Query: 179 WESDEMDEDV 188
+DE +E +
Sbjct: 280 TWTDEGNESL 289
>gi|389749729|gb|EIM90900.1| ribonuclease H2 subunit A [Stereum hirsutum FP-91666 SS1]
Length = 317
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+V ++ P+ +S+ ML + NLN S D+ + LI VL G+ L+EVY+D +G +
Sbjct: 99 LGWSVRVVSPQAISSGMLRRPPTNLNRQSEDATVLLIREVLQRGLELSEVYVDALGPTKT 158
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE----------- 123
Y+A LS +FP I F V+ KADS + +V AS+ AKVTRD + GWI+EE
Sbjct: 159 YEAYLSSQFPGINFTVTAKADSKFKIVGAASVAAKVTRDAWIEGWIYEEDSPSSDKQYEL 218
Query: 124 --TAENMHR---NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEV 177
T+E R FGSGYP DP+TK W+ FGFPS VRFSW T K+ +V
Sbjct: 219 QSTSEAKRRWASEFGSGYPSDPKTKEWIKLSLDRTFGFPSFVRFSWTTAKVALEKEAHDV 278
Query: 178 LWESD 182
W D
Sbjct: 279 QWIDD 283
>gi|307103270|gb|EFN51532.1| hypothetical protein CHLNCDRAFT_140248 [Chlorella variabilis]
Length = 259
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 119/234 (50%), Gaps = 40/234 (17%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+ D++ +S KML + +++LN ++ +S LI VL G
Sbjct: 46 LGYQADVLSAAFISGKMLGRERVSLNALAFESTCALIEAVLARG---------------- 89
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE----------- 123
+LSQRFP ++FVV KADS YP+VS ASIVAKVTRDRTLR ++ E
Sbjct: 90 --ERLSQRFPGVQFVVEAKADSTYPIVSAASIVAKVTRDRTLRDFVLGEMAASLDGGSSS 147
Query: 124 ---TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 179
A + FGSGYP DP+TK WL + +FGFPSLVRFSW TCT + + +
Sbjct: 148 SDGCAAALSTQFGSGYPADPQTKRWLEASINRVFGFPSLVRFSWSTCTPLLEQHAATITF 207
Query: 180 ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQ 233
E D D +G Q LS G + SSG GR + ARKL++
Sbjct: 208 ERDAEDG------AGTGQQVLS-FGGCALPAGGMAAASSGLGRHSYFMARKLQR 254
>gi|321262130|ref|XP_003195784.1| ribonuclease HI large subunit [Cryptococcus gattii WM276]
gi|317462258|gb|ADV23997.1| Ribonuclease HI large subunit, putative [Cryptococcus gattii WM276]
Length = 260
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 102/154 (66%), Gaps = 4/154 (2%)
Query: 13 NPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
+P ++ + P+++S+ ML K INLN + DS +GLI LN GI +TE Y+D +G A
Sbjct: 95 SPLCYSSSTLSPQDISSSMLRKVPINLNRQAEDSTVGLIQAALNRGINVTECYVDALGPA 154
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
++QA+L+ FP+IKF V KADSL+ +V ASIVAKVTRDR + GW E E + R
Sbjct: 155 PQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGW--SEDEEEVIR-- 210
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GSGYP DP+T+A+L +FG+ +VRFSW T
Sbjct: 211 GSGYPSDPKTQAYLKKSIDPVFGYKGIVRFSWAT 244
>gi|294891483|ref|XP_002773596.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
gi|239878780|gb|EER05412.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
Length = 339
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 122/218 (55%), Gaps = 23/218 (10%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+AV ++ E+S KML +NK+NLN ISH++AIGLI L+ GI + EVY+DTVGD E+
Sbjct: 119 LGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVKEVYVDTVGDPER 178
Query: 75 YQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KLS F VV KKAD++YP+ S ASI AKV RDR + I + +
Sbjct: 179 YQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEDI------SYYPE 232
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS-HFKDIVEVLWESDEM------ 184
GSGYPGD +T WL +F FP +RFSW T K +E W DE
Sbjct: 233 VGSGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEIEKKRALEFDWHDDEYLEGNDE 292
Query: 185 ----DEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESS 218
D + S RR+ + L+ F+++KR +I +S
Sbjct: 293 NKPGDNNSSGRRASQPSLQSM---FNAAKRARRKIFTS 327
>gi|170099025|ref|XP_001880731.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644256|gb|EDR08506.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 302
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 94/157 (59%), Gaps = 5/157 (3%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+V ++ P+ +S+ ML + NLN S D+ I L+ VL GI ++EVY+D +G
Sbjct: 95 LGWSVRVVSPQAISSGMLCRPPTNLNRQSQDATILLLREVLAKGIQVSEVYVDALGTTTT 154
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN-----MH 129
Y+A LS FP I F V+ KADS + +V AS+ AKVTRD + GW FEE +
Sbjct: 155 YEAYLSSLFPGIDFTVTTKADSKFKIVGAASVAAKVTRDACVEGWTFEENIGKEGDKWSN 214
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GSGYP DP T+AWL +FGFP LVRFSW T
Sbjct: 215 ATLGSGYPSDPNTQAWLKGSVDPVFGFPKLVRFSWTT 251
>gi|406606142|emb|CCH42502.1| Ribonuclease H2 subunit A [Wickerhamomyces ciferrii]
Length = 343
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 109/178 (61%), Gaps = 7/178 (3%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GW+ + ++S+ ML + NLNE +HD+ + LI VL+ G+ LTE+++DTVG
Sbjct: 133 IGWSTRTMTAMDISSGMLRPPSVGNYNLNEQAHDATMDLIQGVLDQGVNLTEIFVDTVGP 192
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQAKL +RFP++K +V+KKADS+YP+VS ASI AKVTRD +L ++
Sbjct: 193 PVTYQAKLQKRFPNLKIIVAKKADSIYPIVSAASICAKVTRDFSLNN--SKDQLYGSEIT 250
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVLWESDEMDED 187
+GSGYP DP TK WL + IFG+ +VRFSW T D +E+ WE D +D
Sbjct: 251 WGSGYPSDPNTKKWLNNAVDPIFGWDQVVRFSWQTAKDAIIKNDGIEIEWEEDNEKDD 308
>gi|413916151|gb|AFW56083.1| hypothetical protein ZEAMMB73_828983 [Zea mays]
Length = 277
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 98/145 (67%), Gaps = 29/145 (20%)
Query: 17 WAVDIIDPRELSAKMLNKN-----KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
W VD+I P++LSAKML K+ K+NLNEISH+SA+GL+ +VL++G+LL E Y+DTVGD
Sbjct: 26 WEVDVIRPKDLSAKMLKKSHCFRSKVNLNEISHNSAMGLVRKVLDMGVLLAEAYIDTVGD 85
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
+KY+ KL+++F KFVV+KK DSLY VVSGASIVAK + G
Sbjct: 86 LKKYRIKLTEKFTGFKFVVAKKVDSLYTVVSGASIVAK-----NING------------- 127
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGF 156
DP+TK WL DHKH++FGF
Sbjct: 128 ------ADPDTKRWLEDHKHLVFGF 146
>gi|328872786|gb|EGG21153.1| ribonuclease H2 subunit A [Dictyostelium fasciculatum]
Length = 303
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 109/182 (59%), Gaps = 4/182 (2%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+ DI P LS KM K +L+ ISH SA +I VL+ G + E+YLDTVG A K
Sbjct: 104 IGFVSDINTPEYLSEKMCAKMPTSLDVISHGSAFKMIRTVLDRGYNVQELYLDTVGPALK 163
Query: 75 YQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE-TAENMHRNF 132
YQ KL FPSI K VVS KADS+YP+VS SIVAKV RD + F + R+F
Sbjct: 164 YQTKLQIAFPSIGKIVVSSKADSIYPIVSAGSIVAKVLRDVLIANTSFAAYQGVEISRDF 223
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIVEVLWES-DEMDEDVSS 190
GSGYP DP TK WL +H+ +FG+P +++RFSW T ++ + W S D+ S+
Sbjct: 224 GSGYPSDPSTKKWLREHRDNVFGYPDNIIRFSWKTTINNLASESSIHWVSLDKQSHYFST 283
Query: 191 RR 192
+R
Sbjct: 284 KR 285
>gi|58271424|ref|XP_572868.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229127|gb|AAW45561.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 260
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
P ++ + P+++S+ ML K INLN + D+ +GLI LN GI +TE Y+D +G A
Sbjct: 96 PLCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTECYVDALGPAP 155
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
++QA+L+ FP+IKF V KADSL+ +V ASIVAKVTRDR + GW +E E + R G
Sbjct: 156 QWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGWSQDE--EEVIR--G 211
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
SGYP DP+T+A+L +FG+ +VRFSW T
Sbjct: 212 SGYPSDPKTQAYLKGSIDPVFGYKGIVRFSWAT 244
>gi|395332583|gb|EJF64962.1| ribonuclease H2 subunit A [Dichomitus squalens LYAD-421 SS1]
Length = 304
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 110/200 (55%), Gaps = 7/200 (3%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+V ++ P+++SA ML + NLN+ S ++ + LI VL G+ L+EVY+D +G
Sbjct: 101 LGWSVRVLSPKDISAGMLKRPPTNLNQQSQNATVLLIREVLARGVQLSEVYVDALGRTTS 160
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM-HRNFG 133
Y+A LS FP I F V KAD + +V AS+ AKVTRD + GW++EE A + G
Sbjct: 161 YEAYLSSLFPDIAFTVQAKADLTFKIVGAASVAAKVTRDAWIDGWVYEERAPGKWAQETG 220
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDV---- 188
SGYP DP+T+AW+ FG+PS RFSW T KD V W D V
Sbjct: 221 SGYPSDPKTQAWIRSSLEPTFGYPSFARFSWATIKVALEKDGHAVEWIDDGQASLVQAFT 280
Query: 189 -SSRRSGKRQLKLSDIGFSS 207
++ R R L D+ SS
Sbjct: 281 GATGRDKDRCLVTKDLCLSS 300
>gi|294890217|ref|XP_002773106.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
gi|239878004|gb|EER04922.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 124/224 (55%), Gaps = 23/224 (10%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+AV ++ E+S KML +NK+NLN ISH++AIGLI L+ GI + EVY+DTVGD E+
Sbjct: 118 LGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVKEVYVDTVGDPER 177
Query: 75 YQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE----ETAEN 127
YQ KLS F VV KKAD++YP+ S ASI AKV RDR + I E
Sbjct: 178 YQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEEISYYPEGEGVAT 237
Query: 128 MHRN--FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS-HFKDIVEVLWESDEM 184
+ R+ GSGYPGD +T WL +F FP +RFSW T K +E W DE
Sbjct: 238 LCRSVKVGSGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEIEKKRALEFDWHDDEY 297
Query: 185 ----------DEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESS 218
D + S RR+ + L+ F+++KR +I +S
Sbjct: 298 LEGNDENRPGDNNSSGRRASQPSLQSM---FNAAKRARRKIFTS 338
>gi|343427877|emb|CBQ71403.1| related to 35 kDa ribonuclease H [Sporisorium reilianum SRZ2]
Length = 464
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 114/222 (51%), Gaps = 48/222 (21%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAV ++ P+++SA ML + +NLN S + + LI VL+ G+ +TE+Y+DTVGDA+
Sbjct: 133 LGWAVRVMAPQDISAGMLRRRPVNLNAQSSSATVSLIQGVLDSGVDVTEIYVDTVGDAKS 192
Query: 75 YQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET------- 124
Y L+ FP +K+ V+ KAD++YP+V ASI AKVTRDR + GW + E
Sbjct: 193 YARLLASHFPRHPHVKWTVTSKADAIYPIVGAASIAAKVTRDRCVEGWRYAEQPVRTECV 252
Query: 125 ---------AENMHRN----------------FGSGYPGDPETKAWLTDHKHIIFGFPSL 159
E M R GSGYPGDP T A+L +FG+P +
Sbjct: 253 LGDATNVLHGEAMERKRKECDDDVDVWTSMGALGSGYPGDPNTVAYLKRTLDPVFGWPGI 312
Query: 160 VRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGKRQLKLS 201
VRFSW T + +DE V+ GKR + S
Sbjct: 313 VRFSWATAKTM-------------LDEKVAPTLGGKRLTRTS 341
>gi|324513411|gb|ADY45510.1| Ribonuclease H2 subunit A [Ascaris suum]
Length = 190
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 91/138 (65%), Gaps = 1/138 (0%)
Query: 31 MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVV 90
ML + K +LNE+SH SAI LI L GI +TE+Y+DTVG YQAKL FP+I V
Sbjct: 1 MLRRCKYSLNELSHTSAINLIKFALENGINVTEIYVDTVGPKSTYQAKLQAHFPNISITV 60
Query: 91 SKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR-NFGSGYPGDPETKAWLTDH 149
++KADSL+PVV ASI AKVTRD LR W+F E + +GSGYPGDP T+ +L
Sbjct: 61 TEKADSLFPVVGAASIAAKVTRDGVLRDWVFVEGDVTVPEGGYGSGYPGDPNTRKFLVTS 120
Query: 150 KHIIFGFPSLVRFSWGTC 167
+FG+ SLVRFSW T
Sbjct: 121 IDPVFGYSSLVRFSWKTA 138
>gi|354545252|emb|CCE41979.1| hypothetical protein CPAR2_805280 [Candida parapsilosis]
Length = 381
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 108/185 (58%), Gaps = 20/185 (10%)
Query: 15 FGWAVDIIDPRELSAKMLNK----NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
GWA + +++S+ ML NLNE +HD+ I LI +V+N GI +TE+Y+DTVG
Sbjct: 171 IGWATTTMTAKDISSGMLRSVHGIGAYNLNEQAHDATINLIKQVINQGINVTEIYVDTVG 230
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH- 129
YQAKL + FP+I VSKKADS+YP+VS AS+VAKVTRD +R + N H
Sbjct: 231 PPVSYQAKLKKLFPTIDITVSKKADSVYPIVSTASVVAKVTRDLNIRHY-------NTHL 283
Query: 130 -----RNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEVLWES 181
+ GSGYP DP T WL + +FG+ +RFSW T D VEV+++
Sbjct: 284 PILQGQKLGSGYPSDPNTSYWLNHNVDPVFGWCFGFIRFSWQTAKDALMKHDAVEVIYQD 343
Query: 182 DEMDE 186
D + E
Sbjct: 344 DCVKE 348
>gi|443898899|dbj|GAC76232.1| ribonuclease HI [Pseudozyma antarctica T-34]
Length = 493
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 127/255 (49%), Gaps = 34/255 (13%)
Query: 13 NPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
N GWAV ++ P+++SA ML + INLN S + + LI VL G+ +TE+Y+DTVGD
Sbjct: 144 NHLGWAVRVMSPQDISAGMLRRRPINLNAQSSQATVSLIAGVLEQGVDVTEIYVDTVGDP 203
Query: 73 EKYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENM 128
+ Y LS F P IK+ V+ KAD++YP+V ASI AKVTRDR + W + E+ A
Sbjct: 204 KSYARLLSSHFPRHPHIKWTVTSKADAIYPIVGAASIAAKVTRDRCIENWKYAEQPAPAP 263
Query: 129 HR------------------------------NFGSGYPGDPETKAWLTDHKHIIFGFPS 158
H GSGYPGDP T A+L +FG+P
Sbjct: 264 HTVLGDSTNRPAASVGEPTKRRIDSDVWDRMGALGSGYPGDPNTVAYLKRTLDPVFGWPG 323
Query: 159 LVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESS 218
+VRFSW T + ++ ++ S + + + +R + + S I +++ +S+ S
Sbjct: 324 IVRFSWATAKTMLEEKIKPATASLDTEPVLGGKRLTRSLSRTSSIADATTALQSDAEASV 383
Query: 219 GKGRCKFLEARKLEQ 233
+ L L Q
Sbjct: 384 AATQAVSLYGTPLPQ 398
>gi|363753492|ref|XP_003646962.1| hypothetical protein Ecym_5390 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890598|gb|AET40145.1| hypothetical protein Ecym_5390 [Eremothecium cymbalariae
DBVPG#7215]
Length = 306
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 108/177 (61%), Gaps = 12/177 (6%)
Query: 15 FGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S ML + NLNE +HD IGLI +VL+ G+ ++ +Y+DTVG
Sbjct: 99 IGYATTSITPFDISTGMLRYPPEQNYNLNEQAHDVTIGLIQKVLDAGVNISHIYVDTVGP 158
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL +RFP KF V+KKADSLYPVVS AS++AKVTRD L E+
Sbjct: 159 PITYQDKLEKRFPVCKFTVAKKADSLYPVVSVASVIAKVTRDVWL-----EQLRTIPDEI 213
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTCTSHFKD---IVEVLWESDEM 184
GSGYPGDP+T WL ++ +FG+ P +VRFSW TC + + + + WE + +
Sbjct: 214 LGSGYPGDPKTVKWLNENIRPLFGWNPEIVRFSWQTCQNILETNPHAINIEWEEESL 270
>gi|159467162|ref|XP_001691767.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279113|gb|EDP04875.1| predicted protein [Chlamydomonas reinhardtii]
Length = 266
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 107/175 (61%), Gaps = 8/175 (4%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A + GW I+ + +S ML ++K +LN ++ D+ +I R L G VY+DTVG
Sbjct: 90 ADSGVGWVAHIMSAQFISGHMLGRDKTSLNALAFDATCAIIRRALESG---ANVYVDTVG 146
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
DA++++ +LS+ FP + F V KADSLYP+VS ASIVAKV RD++L + + +
Sbjct: 147 DADRHRDRLSRAFPGLDFTVCPKADSLYPIVSAASIVAKVIRDKSLTD---SQKSLGLTG 203
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWESDE 183
G+GYPGD T WL H H ++GFP LVR SW TC+ + + V + +E+DE
Sbjct: 204 EVGTGYPGDSATTTWLKQHMHPLWGFPRLVRHSWETCSRMLEPPEGVGLKFEADE 258
>gi|448119560|ref|XP_004203761.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
gi|359384629|emb|CCE78164.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
Length = 368
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 111/188 (59%), Gaps = 10/188 (5%)
Query: 13 NPFGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
N GWA I +++S+ ML K NLN+ +HD+ I LI +++N + + ++++DT
Sbjct: 153 NNVGWATTQISAKDISSGMLRSSLGKGAYNLNDQAHDTTIELIQQIINRKLNIAKIFVDT 212
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG YQAKL +RFP I+ V+KKADSL+PVVS ASIVAKVTRD+ L + + A +
Sbjct: 213 VGPPASYQAKLQKRFPGIEVTVTKKADSLFPVVSTASIVAKVTRDKVLHYYC--DIAPLL 270
Query: 129 HR-NFGSGYPGDPETKAWLTDHKHIIFG-FPSLVRFSWGTCTSHF--KDIVEVLWESDEM 184
+FGSGYP DP T WL +FG F LVRFSW T V++E++ +
Sbjct: 271 QSASFGSGYPSDPNTSRWLNSSVDTVFGWFFGLVRFSWQTAKDALVKNGACSVIYEAECV 330
Query: 185 DEDVSSRR 192
ED R
Sbjct: 331 KEDTGYRN 338
>gi|449017231|dbj|BAM80633.1| probable ribonuclease HI large subunit [Cyanidioschyzon merolae
strain 10D]
Length = 328
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 109/169 (64%), Gaps = 6/169 (3%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLS 80
I+ P LSA ML + ++NLNE S+ + I L+ L+ G+ + +++DTVG+ + YQ +L
Sbjct: 75 ILSPEMLSATMLGRKRVNLNETSYAATISLVKDALSSGMFIEGLFVDTVGEPDAYQMRLK 134
Query: 81 QRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH----RNFGSG 135
+ FP I + VV +A+S + VV+ ASI+AKVTRD+ LR W F E A + R +GSG
Sbjct: 135 RIFPKIPRIVVQSEAESRFAVVAAASIIAKVTRDKALRTWTFPEEANDPQLRFSREYGSG 194
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDE 183
YP DP T+ WL H IFGFPS+VRFSW TC+ K+ V+V W ++
Sbjct: 195 YPADPLTQRWLRKHLDPIFGFPSIVRFSWSTCSRILEKECVQVDWPEED 243
>gi|254565155|ref|XP_002489688.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
Okazaki fragment synthesis [Komagataella pastoris GS115]
gi|238029484|emb|CAY67407.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
Okazaki fragment synthesis [Komagataella pastoris GS115]
gi|328350107|emb|CCA36507.1| ribonuclease H2 subunit A [Komagataella pastoris CBS 7435]
Length = 314
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 106/199 (53%), Gaps = 10/199 (5%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
GWA I ++S+ ML + I NLNE +HD + LI +V+ G+ L VY+DTVG
Sbjct: 116 GWATTSISACDISSAMLKPHNIGNYNLNEQAHDVTMELIDKVIQKGVNLRHVYVDTVGPP 175
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
YQ KL QRFP++ VSKKAD++YP VS AS+ AKVTRD LR E +
Sbjct: 176 ASYQKKLQQRFPALLITVSKKADAIYPCVSSASVCAKVTRDVCLR----TSNGEENLLDC 231
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT---CTSHFKDIVEVLWESDEMDEDVS 189
GSGYP DP TK WL H +FG+ VRFSW T C I V E + +
Sbjct: 232 GSGYPSDPNTKKWLAQSIHPLFGWSRDVRFSWQTAKDCLERHNSIKVVFGEEEPTPVNFG 291
Query: 190 SRRSGKRQLKLSDIGFSSS 208
K++ D+ S+S
Sbjct: 292 DLGLSKQKTDFKDLEISTS 310
>gi|302683973|ref|XP_003031667.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
gi|300105360|gb|EFI96764.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
Length = 286
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 95/165 (57%), Gaps = 9/165 (5%)
Query: 4 EAALPKWASNP--FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 61
EA L S P GWAV +I P+ LS+ ML + NLNE S D+ + LI VL GI L
Sbjct: 78 EALLETLCSAPDVLGWAVRVISPQALSSGMLRRPPTNLNEQSRDATVMLIRGVLARGIQL 137
Query: 62 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+ V++D +G Y+ LSQRFP IKF V+ KADS + +V AS+ AKVTRD +
Sbjct: 138 SAVFVDALGPTVAYEQWLSQRFPEIKFTVANKADSKFKIVGAASVAAKVTRDALI----- 192
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
A GSGYP DP+TKAWL FGFP VRFSW T
Sbjct: 193 --DASRFPAERGSGYPSDPKTKAWLAAAVEPTFGFPRAVRFSWAT 235
>gi|118355616|ref|XP_001011067.1| ribonuclease HII family protein [Tetrahymena thermophila]
gi|89292834|gb|EAR90822.1| ribonuclease HII family protein [Tetrahymena thermophila SB210]
Length = 284
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 120/212 (56%), Gaps = 8/212 (3%)
Query: 5 AALPKWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV 64
A + + ++ + V I+ LS +ML KN+ +LNE+S ++A LI V++ G +T+V
Sbjct: 65 ARMEELKNDKLYFEVRILSAEFLSNRMLAKNRDSLNELSFNAAYSLIDSVMSQGFNVTQV 124
Query: 65 YLDTVGDAEKYQAKLSQ----RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 120
+LDTVG E YQAKL Q +P +KF VS KAD+ +PVV ASI AKVTRD +
Sbjct: 125 FLDTVGKEETYQAKLYQDYKYTYPQLKFTVSSKADAKFPVVGAASICAKVTRDLQITNND 184
Query: 121 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD---IVEV 177
E + + + GSGYP DP TK WL + +FGFPS VR+SW T + F + V
Sbjct: 185 MREPLD-LSKATGSGYPSDPNTKKWLQEVFDPVFGFPSNVRYSWSTVDNIFNEKKLQVNF 243
Query: 178 LWESDEMDEDVSSRRSGKRQLKLSDIGFSSSK 209
ESD+ D++ S Q K G+ S K
Sbjct: 244 FDESDKKDKNQKSLTQMVSQKKSETNGYYSKK 275
>gi|154318955|ref|XP_001558795.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10]
Length = 1493
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 10/197 (5%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWAVD++ R++ A M+ NLN + DS I LI V++ G+ + E+Y+D +G+ Y
Sbjct: 135 GWAVDVMSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALGNTVTY 194
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----RGWIFEETAENM--- 128
Q KL + FP+ + V+KKADSLYP VS AS+ AKVTRD L ++ ++ + M
Sbjct: 195 QKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALESLYESYMNKDGDQKMGGT 254
Query: 129 -HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD-EMDE 186
++GSGYP D WL + IFG+ S RFSWGT T D+ + + D ++E
Sbjct: 255 EEDSWGSGYPSDARATTWLKRNMDPIFGWGSECRFSWGT-TKDMLDLKGIAAKVDWPIEE 313
Query: 187 DVSSRRSGKRQLKLSDI 203
D +R++G R L+ S++
Sbjct: 314 DDETRKTGIRNLEFSEL 330
>gi|390595476|gb|EIN04881.1| ribonuclease H2 subunit A [Punctularia strigosozonata HHB-11173
SS5]
Length = 341
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 109/223 (48%), Gaps = 47/223 (21%)
Query: 11 ASNP--FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
+SNP W+V ++ P+ LSA ML INLN S ++ I LI VL GI LTEVY+D
Sbjct: 93 SSNPEKLSWSVRVLCPQALSAGMLRIPPINLNRQSEEATILLIREVLQKGIELTEVYVDA 152
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE-- 126
+G EKY+ LS FP I V KADSL+ +V AS+ AKVTRD L W+FEE E
Sbjct: 153 LGPPEKYEKYLSSVFPGISITVRNKADSLFKIVGAASVAAKVTRDECLENWLFEEGGEPR 212
Query: 127 ----NMHRN----------------------------------FGSGYPGDPETKAWLTD 148
+H GSGYPGDP+T AW+
Sbjct: 213 PIPRTVHEAPEETPLVEHPSDADQSGAQKDVDMESTQDPWGSVLGSGYPGDPKTVAWMDC 272
Query: 149 HKHIIFGFPSLVRFSWGTCTSHFKDIV-EVLWESDEMDEDVSS 190
+FG+PS+ RFSW T + EV W MDE +S
Sbjct: 273 SLDPVFGYPSVARFSWSTIKNRLAQKAHEVKW----MDEGQAS 311
>gi|254576869|ref|XP_002494421.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
gi|238937310|emb|CAR25488.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
Length = 309
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 109/184 (59%), Gaps = 8/184 (4%)
Query: 16 GWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+AV I P ++S+ ML N N NLNE +HD I LI VL G+ L VY+DTVG
Sbjct: 112 GYAVTAITPADISSGMLRYPANAN-YNLNEQAHDVTIALIEGVLQRGVKLHHVYVDTVGP 170
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL Q+FP IKF V+KKADSLY VVS ASIVAKVTRD L W ++ +
Sbjct: 171 PASYQKKLEQKFPHIKFTVAKKADSLYCVVSVASIVAKVTRDILLEQWA-QQVSPPEAGP 229
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTCTSHFKDI-VEVLWESDEMDEDVS 189
GSGYP D +T AWL + + G+ P LVRFSW T + + +++ WE + V
Sbjct: 230 LGSGYPADAKTTAWLRNTMKPLMGWDPHLVRFSWQTSETLLDNKGIQIEWEEKSKSKPVW 289
Query: 190 SRRS 193
+ +S
Sbjct: 290 AGKS 293
>gi|403176173|ref|XP_003334882.2| hypothetical protein PGTG_16050 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172135|gb|EFP90463.2| hypothetical protein PGTG_16050 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 349
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 96/168 (57%), Gaps = 11/168 (6%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 76
W V ++ P ++S M ++ NLN + D+ +I L++ L +Y+DT+G + +Q
Sbjct: 138 WNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQYNLQHIYVDTLGPPKTHQ 197
Query: 77 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR------ 130
KL Q FP IKF V KADS+YP+V AS+VAKVTRD + WI E+ R
Sbjct: 198 MKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDAIVSHWIHPESTHPQKRKSSQED 257
Query: 131 -----NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
+ GSGYP DP T WL+++ + IFGF LVRFSWGT + D
Sbjct: 258 EDATTSLGSGYPSDPNTVKWLSENFNTIFGFGQLVRFSWGTVKTLLAD 305
>gi|331234733|ref|XP_003330025.1| hypothetical protein PGTG_10935 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309309015|gb|EFP85606.1| hypothetical protein PGTG_10935 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 349
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 96/168 (57%), Gaps = 11/168 (6%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 76
W V ++ P ++S M ++ NLN + D+ +I L++ L +Y+DT+G + +Q
Sbjct: 138 WNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQYNLQHIYVDTLGPPKTHQ 197
Query: 77 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR------ 130
KL Q FP IKF V KADS+YP+V AS+VAKVTRD + WI E+ R
Sbjct: 198 MKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDAIVSHWIHPESTHPQKRKSSQED 257
Query: 131 -----NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
+ GSGYP DP T WL+++ + IFGF LVRFSWGT + D
Sbjct: 258 EDATTSLGSGYPSDPNTVKWLSENFNTIFGFGQLVRFSWGTVKTLLAD 305
>gi|403414687|emb|CCM01387.1| predicted protein [Fibroporia radiculosa]
Length = 317
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 13/165 (7%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+V ++ P+ +S+ ML + NLN S + + LI VL GI L++VY+D +G +
Sbjct: 102 LGWSVRVLCPQAISSGMLRRPPTNLNRQSEQATVLLIREVLQHGIKLSDVYVDALGPTKT 161
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE----------- 123
Y+A LS +FP I F V+ KADS + +V AS+ AKVTRD + W FEE
Sbjct: 162 YEAYLSSQFPGINFTVTAKADSKFKIVGAASVAAKVTRDAWVEDWTFEESSSPHDAESNS 221
Query: 124 --TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
T + GSGYP DP+T+AW+ FGFPSLVRFSW T
Sbjct: 222 KPTNTRWGKELGSGYPSDPKTQAWIKGSLDPTFGFPSLVRFSWTT 266
>gi|323449222|gb|EGB05112.1| hypothetical protein AURANDRAFT_12637 [Aureococcus anophagefferens]
Length = 229
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
A GWAV+++ +SA+ML +LN IS D+ LI RVL+ G + E ++DTVG
Sbjct: 67 ADERMGWAVEVVSAARISAEMLQVKPTSLNAISFDATCRLIQRVLDRGADVVEAFVDTVG 126
Query: 71 DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
+ + Y +L++ F IKF V+KKAD+LY ASI AKV RD ++ W ++E +
Sbjct: 127 NPDSYSERLTRAFDGKIKFTVAKKADALYKCTGAASICAKVCRDLSIARWTYDEPGVD-D 185
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
+FGSGYP DP AWL + H +FG+P+ RFSW + +D
Sbjct: 186 LDFGSGYPSDPACVAWLARNVHGVFGYPNFCRFSWAPAKARLRD 229
>gi|296233041|ref|XP_002761859.1| PREDICTED: ribonuclease H2 subunit A [Callithrix jacchus]
Length = 278
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 100/176 (56%), Gaps = 24/176 (13%)
Query: 13 NPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
N GWA+D++ P +S ML + L +V V++DTVG
Sbjct: 88 NFVGWALDVLSPNLISTSMLGR-------------FSLSRKV---------VFVDTVGMP 125
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
E YQ +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 126 ETYQKRLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQFVEKLQDLDTDY 185
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 187
GSGYP DP+TK WL +H +FGFP VRFSW T + K+ +V+WE D ED
Sbjct: 186 GSGYPNDPKTKVWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAKDVIWE-DSAPED 240
>gi|449691976|ref|XP_004212862.1| PREDICTED: ribonuclease H2 subunit A-like, partial [Hydra
magnipapillata]
Length = 127
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 85/124 (68%), Gaps = 3/124 (2%)
Query: 64 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 123
+Y+DTVGDA KYQ KLS+ F + V+ KAD+L+P+VS ASI AKV RDR ++GW F E
Sbjct: 1 MYVDTVGDASKYQNKLSEVFDGVSVKVTPKADALFPIVSAASICAKVARDRCIQGWQFPE 60
Query: 124 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESD 182
++ ++GSGYP DP+TK WL D +FGFP VRFSW TC + K EV+WE D
Sbjct: 61 G--DIKEDYGSGYPADPKTKQWLKDVVDPVFGFPQFVRFSWSTCVNILEKHACEVMWEDD 118
Query: 183 EMDE 186
E +E
Sbjct: 119 EAEE 122
>gi|345568395|gb|EGX51289.1| hypothetical protein AOL_s00054g359 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 103/174 (59%), Gaps = 3/174 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
GWAV ++ R++++ ML + N+N +HD+ + LI VL G+ + E+++DTVG A
Sbjct: 149 GWAVRVMSARDITSGMLRPAGVGTYNINAQAHDTTMNLIDEVLKKGVNVKEIFVDTVGPA 208
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
YQAKL +RFP+ K VSKKADSLYP VS AS+ AKVTRD L+ + N
Sbjct: 209 VTYQAKLQRRFPTTKVTVSKKADSLYPSVSVASVCAKVTRDFALKESFSLASGGGEVPNT 268
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDE 186
GSGYP DP++ A+L +FG+ S RFSW T K EV+ D DE
Sbjct: 269 GSGYPSDPKSIAYLKGSMDSLFGWGSETRFSWSTAAELLKKDAEVVDWPDNDDE 322
>gi|393241381|gb|EJD48903.1| ribonuclease H-like protein [Auricularia delicata TFB-10046 SS5]
Length = 318
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAV ++ P+ +S ML + INLN S ++ I LI VL GI L+ VY+D +G ++
Sbjct: 96 LGWAVRVVSPQAISRGMLRRPPINLNIQSQEATILLIREVLAKGIQLSHVYVDALGSSKT 155
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF-- 132
YQ LS FP I F V KAD+ + +V AS+ AKVTRD + WIF+E ++++ +
Sbjct: 156 YQDYLSSVFPGIAFDVRPKADATFKIVGAASVAAKVTRDAWIENWIFDELSKHVPGDVDA 215
Query: 133 ------------------GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KD 173
GSGYP DP+T+ WL + FGFPS+VRFSW T KD
Sbjct: 216 DEKDIAAPMAPAWATAETGSGYPSDPKTQGWLRNSLEPTFGFPSVVRFSWATAKVALEKD 275
Query: 174 IVEVLWESDEMDEDVSS 190
V W D V S
Sbjct: 276 GHAVKWTDDNQSSLVKS 292
>gi|392578857|gb|EIW71984.1| hypothetical protein TREMEDRAFT_26073 [Tremella mesenterica DSM
1558]
Length = 272
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 101/153 (66%), Gaps = 8/153 (5%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQ 81
+ P+ +SA ML + +NLN + D+ +GL+ L+ GI +TE Y+D +G A ++QA+LS
Sbjct: 99 LSPQAISANMLRRIPVNLNRQAEDATVGLVQAALDRGIKVTECYVDALGPAPQWQARLSS 158
Query: 82 RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA---ENMHRN-----FG 133
FP+I F V KADSL+ +VS ASI+AKVTRDR + W+ ET+ E++ N +G
Sbjct: 159 LFPTISFTVCPKADSLFKIVSAASIIAKVTRDRYIENWLDWETSKSHESLSFNQNGFSWG 218
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
SGYP DP T+A+L ++ +FG+ VRFSW T
Sbjct: 219 SGYPSDPRTQAFLKENLDPVFGYTGAVRFSWAT 251
>gi|406695841|gb|EKC99140.1| hypothetical protein A1Q2_06544 [Trichosporon asahii var. asahii
CBS 8904]
Length = 300
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 110/180 (61%), Gaps = 18/180 (10%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQ 81
+ P+ +SA ML K INLN+ + D+ +GLI L+ GI + E ++D +G ++ +Q KLS
Sbjct: 97 LAPQAISAAMLRKVPINLNQQAQDATMGLIRAALDRGINVQECFVDALGPSQVWQDKLSA 156
Query: 82 RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI------------FEETAENMH 129
FP+IKF+V KADSL+ +V ASIVAKVTRDR + GW+ +E AE +
Sbjct: 157 EFPTIKFLVCPKADSLFKIVGAASIVAKVTRDRYIEGWVDAEGPMPGSAGAGDEEAEELI 216
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 189
R GSGYP DP+T+A+L +FG+ +VRFSW T K ++E S + +DVS
Sbjct: 217 R--GSGYPSDPKTQAFLRQQLDPVFGYRGMVRFSWAT----VKVLLEKQGHSCQWADDVS 270
>gi|325189407|emb|CCA23898.1| ribonuclease H2 subunit A putative [Albugo laibachii Nc14]
Length = 303
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 111/211 (52%), Gaps = 3/211 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
W + E+S KM K + NLNEI+ D+ I +I V + L VY+DT+GD
Sbjct: 86 ISWIARSVSACEISDKMQRKVR-NLNEIARDATIQIIEIVQAKRVCLQCVYVDTIGDPSW 144
Query: 75 YQAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
YQ L++ F I FVV KKAD L+ +VS ASIVAKV RD L W +E + FG
Sbjct: 145 YQNFLTKHFREKITFVVRKKADQLFKIVSAASIVAKVIRDTILEEWKWETLTHTLPTEFG 204
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE-SDEMDEDVSSRR 192
SGYP DP TKAWL ++ IF +P++VRFSW T + + +V W D ++ S R
Sbjct: 205 SGYPSDPSTKAWLLQYRDPIFAYPNIVRFSWSTIENLLQATPKVAWAFDDSTPKNESVRA 264
Query: 193 SGKRQLKLSDIGFSSSKRRSEEIESSGKGRC 223
S S S K+R I + + C
Sbjct: 265 SITSFFPPSKSASSVGKKRKRSIILTSRKLC 295
>gi|213404976|ref|XP_002173260.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
gi|212001307|gb|EEB06967.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
Length = 321
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 110/183 (60%), Gaps = 13/183 (7%)
Query: 11 ASNPFGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
AS GWA ++ R++S ML + +K NLN +HDS I LI VL G ++E+Y+DTV
Sbjct: 119 ASTSIGWATTVMTARDISRGMLRRVDKYNLNAQAHDSTIALIQSVLKAGYNISEIYVDTV 178
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G YQAKL RFP K V+KKADSL+P+VS ASI AKVTRD L E T E +
Sbjct: 179 GPPAVYQAKLQNRFPQAKVTVTKKADSLFPIVSLASICAKVTRDAHL-----ERTREALD 233
Query: 130 -RNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFK----DIVEVLWESDE 183
N+G GY D +T AWL + H +FG+ +VR+SW T + + +V++ W DE
Sbjct: 234 IDNWGCGYSSDSQTTAWLRKNVHPVFGWKGHVVRYSWQTAKNLLEIGKNGMVDMDWH-DE 292
Query: 184 MDE 186
D+
Sbjct: 293 QDK 295
>gi|294654510|ref|XP_456567.2| DEHA2A05632p [Debaryomyces hansenii CBS767]
gi|199428939|emb|CAG84523.2| DEHA2A05632p [Debaryomyces hansenii CBS767]
Length = 375
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 109/179 (60%), Gaps = 8/179 (4%)
Query: 16 GWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GWA + +++S+ ML K NLNE +HD+ I LI +VL G+ +T+V++DTVG
Sbjct: 155 GWATTTMTAKDISSGMLQTVLGKGSYNLNEQAHDTTIQLIKQVLAKGVNVTKVFVDTVGP 214
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQAKLS+ FP++ V+KKADS+YP+VS AS+VAKVTRD L + + H
Sbjct: 215 PASYQAKLSKIFPTVAITVAKKADSIYPIVSTASVVAKVTRDLNLHFYNIHLPLIHNHA- 273
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFK--DIVEVLWESDEMDED 187
GSGYP DP T WL + +FG+ LVRFSW T + + V V++E+ + ED
Sbjct: 274 LGSGYPSDPNTSKWLHANVDRVFGWCFGLVRFSWQTSKDSLEKNNAVPVVYEAQCIKED 332
>gi|409048828|gb|EKM58306.1| hypothetical protein PHACADRAFT_182662 [Phanerochaete carnosa
HHB-10118-sp]
Length = 294
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 96/172 (55%), Gaps = 20/172 (11%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+V ++ P+ +SA ML INLN S D+ I LI VL G+ L+EVY+D +G +
Sbjct: 94 IGWSVRVLAPQAISAGMLRHPPINLNRQSEDATILLIREVLESGVKLSEVYVDALGPPQA 153
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN--- 131
++ LS FP I F V+ KADS + +VS AS+ AKVTRD + GW+FEE +
Sbjct: 154 WEKALSTMFPGISFTVTAKADSKFKIVSAASVAAKVTRDAWIEGWMFEEAYVSEEEEEEE 213
Query: 132 -----------------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GSGYPGDP+T AW+ FGFPSL RFSW T
Sbjct: 214 EEGSAEKVMDETKWGGPIGSGYPGDPKTVAWIQSSLEPTFGFPSLARFSWTT 265
>gi|448117125|ref|XP_004203179.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
gi|359384047|emb|CCE78751.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 110/192 (57%), Gaps = 18/192 (9%)
Query: 13 NPFGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
N GWA I +++S+ ML K NLN+ +HD+ I LI ++++ + + ++++DT
Sbjct: 151 NNVGWATTQISAKDISSGMLRSSLGKGAYNLNDQAHDTTIELIQQIIDKKLNIAKIFVDT 210
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW-----IFEE 123
VG YQAKL +RFP ++ V+KKADSL+PVVS ASIVAKVTRD+ L + + +
Sbjct: 211 VGPPASYQAKLQRRFPGVEVTVTKKADSLFPVVSTASIVAKVTRDKVLHHYCSIAPLLQS 270
Query: 124 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFG-FPSLVRFSWGTCTSHF--KDIVEVLWE 180
A FGSGYP DP T WL +FG F LVRFSW T V++E
Sbjct: 271 AA------FGSGYPSDPNTSRWLNSSVDTVFGWFFGLVRFSWQTAKDALVKNGACSVIYE 324
Query: 181 SDEMDEDVSSRR 192
++ + ED R
Sbjct: 325 AECVKEDSGYRN 336
>gi|444320573|ref|XP_004180943.1| hypothetical protein TBLA_0E03700 [Tetrapisispora blattae CBS 6284]
gi|387513986|emb|CCH61424.1| hypothetical protein TBLA_0E03700 [Tetrapisispora blattae CBS 6284]
Length = 312
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 112/179 (62%), Gaps = 15/179 (8%)
Query: 13 NPFGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
N G+A I P ++S+ ML +KN NLNE +HD I LI VL+ + L+ VY+DT
Sbjct: 107 NQIGYATTAITPNDISSGMLRFPPSKN-YNLNEQAHDVTIALIQGVLDQNVQLSHVYVDT 165
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG + YQ KL RFP++KF V+KKADSLY +VS AS+VAKVTRD ++ + N
Sbjct: 166 VGPPQSYQKKLETRFPNVKFTVTKKADSLYCIVSVASVVAKVTRD-----FLIDSMKRNP 220
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKD----IVEVLWESD 182
+ N GSGYP DP TK WL + + +FG+P +VRFSW TC + D +++ WE D
Sbjct: 221 NENIGSGYPSDPNTKRWLRESQTKLFGWPCDMVRFSWQTCDTLLTDSNTKSIQIDWEED 279
>gi|402591687|gb|EJW85616.1| ribonuclease HII [Wuchereria bancrofti]
Length = 304
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
S FG+A I + +SA ML + K +LN++SHD A L+ + I + EVY+DTVG
Sbjct: 90 SEVFGYACRSISAQMISAAMLRRTKYSLNKLSHDCATELLKLAVENNINVVEVYVDTVGP 149
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN-MHR 130
YQA L ++FP ++ +VS+KAD+ +P+VS ASI+AKV RDR LR W F E N +
Sbjct: 150 KGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIIAKVKRDRALRNWTFPEGIVNVLPG 209
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
+GSGYPGDP TK +L D +FG+P+LVRFSW T
Sbjct: 210 GYGSGYPGDPNTKNFLLDAVDQVFGYPNLVRFSWKT 245
>gi|403374437|gb|EJY87169.1| Ribonuclease [Oxytricha trifallax]
Length = 373
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 7/213 (3%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+ ++ LS ML + K NLN ISHD+AI LI +V +G+ + V LDTVG
Sbjct: 150 LGYFTAVLHADYLSNLMLAEMKSGGKNLNTISHDTAIDLIKKVKALGVNVKRVVLDTVGQ 209
Query: 72 AEKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
Y+ L R ++ +V KAD +PVVS ASI AKVTRD+ L W F E + +
Sbjct: 210 PHSYKQLLHNRLKDDELEIIVESKADLNHPVVSAASICAKVTRDQVLADWQFPED-KKID 268
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDV 188
++G GYPGDP+ K WL + +FGFP+LVRFSW TC++ +D V + W D ++D
Sbjct: 269 TDYGCGYPGDPKAKEWLKRNLDPVFGFPTLVRFSWKTCSTILEDNQVNINWRDDIDEKDK 328
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKG 221
++ K +G K ++++ + K
Sbjct: 329 KQQKLNYGAKKEDVVGLPKYKTKTQKERYNNKA 361
>gi|123502031|ref|XP_001328204.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
gi|121911144|gb|EAY15981.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
Length = 269
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 14 PFGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
P G+AV +I E+SAK L I+LN +SH +A L+ L+ G+ + +Y+DTVG
Sbjct: 75 PVGFAVRVISAEEISAKQTALVNPPISLNTVSHHAARDLVQAFLDKGLNIKALYVDTVGI 134
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
AE YQ L +FP+IK V KAD+ Y VV ASI AKVTRDR L + FEE + +
Sbjct: 135 AESYQDWLQDKFPNIKVTVRAKADATYKVVGAASICAKVTRDRLLADFKFEEPGLEISHD 194
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
+GSGYP DP+T WL + +FG+PS+ RF W F++
Sbjct: 195 WGSGYPSDPKTSNWLETNFDPVFGYPSVARFDWKPIKMMFEN 236
>gi|397640214|gb|EJK73996.1| hypothetical protein THAOC_04357 [Thalassiosira oceanica]
Length = 391
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+ + ++ E+S ML ++ NLN +SHD+A+ +I VLN G+ + Y+DTVG E
Sbjct: 150 IGFVLRVLHASEISRNMLRRSPYNLNAMSHDAAMEMIRAVLNAGVRIDTAYVDTVGIPEA 209
Query: 75 YQAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN- 131
YQ KL + F +I FVV KKAD+ Y S AS+VAK RDR GW F E A
Sbjct: 210 YQRKLERAFEGHNINFVVEKKADAKYAPCSAASVVAKEARDRMTSGWKFTEAAFGYKPQG 269
Query: 132 ---FGSGYPGDPETKAWLTDHKHI--IFGFPSLVRFSWGTCTSHFKDIVE 176
GSGYP DP+ KAW+ + ++ FGFP VRFSWG + K++ E
Sbjct: 270 GFEVGSGYPSDPKCKAWMGRNCNVDSPFGFPDFVRFSWGPAKNALKEVDE 319
>gi|47213807|emb|CAF92580.1| unnamed protein product [Tetraodon nigroviridis]
Length = 157
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 90/148 (60%), Gaps = 12/148 (8%)
Query: 34 KNKINLNEISHDSAIGLIT------------RVLNIGILLTEVYLDTVGDAEKYQAKLSQ 81
+ K NLN +SHD+AIGL+ R + ++V++DTVG AEKY+ KLS+
Sbjct: 6 RTKYNLNALSHDTAIGLVQYALDSLESSSKRRTMFSCPSGSQVFVDTVGPAEKYEDKLSK 65
Query: 82 RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPE 141
FP + V KADSL+P+VS ASI AKV RD ++ W F E ++GSGYP DP+
Sbjct: 66 IFPGVNVTVRPKADSLFPIVSAASICAKVARDHAVKHWRFAEELGEADTDYGSGYPNDPK 125
Query: 142 TKAWLTDHKHIIFGFPSLVRFSWGTCTS 169
TKAWL + +FG+P VRFSW T +
Sbjct: 126 TKAWLLRYLDPVFGYPQFVRFSWSTAQT 153
>gi|260946247|ref|XP_002617421.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
gi|238849275|gb|EEQ38739.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
Length = 345
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 103/167 (61%), Gaps = 12/167 (7%)
Query: 16 GWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GWA + +++S ML NLNE +HD+ I LI VL G+ + E+++DTVG
Sbjct: 139 GWATCTMTAKDISNGMLRSALGAGSYNLNEQAHDTTIQLIKDVLLSGVNVREIFVDTVGP 198
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM-HR 130
YQAKL + FPSI V+KKADS+YP+VS AS+VAKVTRD L+ W + E EN+ +
Sbjct: 199 PVSYQAKLKKHFPSIDITVTKKADSIYPIVSTASVVAKVTRDLNLQ-W-YNENVENLIGK 256
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIVE 176
GSGYP DP T WLT + +FG+ L+RFSW T KD +E
Sbjct: 257 CLGSGYPSDPNTSKWLTSNVDKVFGWDFGLIRFSWQTA----KDALE 299
>gi|408388455|gb|EKJ68139.1| hypothetical protein FPSE_11606 [Fusarium pseudograminearum CS3096]
Length = 338
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 100/166 (60%), Gaps = 10/166 (6%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA + R++ A M N NLN + D+ + LI V G+ + E+++DT+G Y
Sbjct: 128 GWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQEIFVDTIGQPAAY 187
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN---- 131
QAKL + FP++K +V+KKADSLYP VS AS+ AKVTRD L +FE A++ +
Sbjct: 188 QAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAKVTRDAALE-VLFEARADDEEKGGEAM 246
Query: 132 -FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
+GSGYP D +W+ ++ H +FG+ RFSWGT KD++E
Sbjct: 247 AWGSGYPSDGNCVSWMKNNMHPVFGWGPECRFSWGTA----KDMLE 288
>gi|169596915|ref|XP_001791881.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
gi|111069760|gb|EAT90880.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
Length = 345
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 118/217 (54%), Gaps = 16/217 (7%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA + +++SA ML+ N NLN + D+ I LI VL G+ +TE+Y+DT+G E Y
Sbjct: 127 GWATRSLSAQDISAHMLSPNVYNLNAQAMDATIDLIKEVLAKGVNVTEIYIDTIGRPETY 186
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---------RGWIFEETAE 126
Q KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD + R AE
Sbjct: 187 QRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAAINVCYAPYHSRALEAGTAAE 246
Query: 127 NMHRN--FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF---KDIVEVLW-- 179
N N +GSGYP D +T WL + +FG+ + RFSWGT K V V W
Sbjct: 247 NAKVNVAWGSGYPSDSKTSTWLKQNMDPLFGWGNECRFSWGTAKELLEGKKPDVNVDWPI 306
Query: 180 ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 216
E D D ++ GK ++ KR +EE+E
Sbjct: 307 EDDGNDMRMTDFFLGKNDTAGDELVDWFGKRVTEEME 343
>gi|328849346|gb|EGF98528.1| hypothetical protein MELLADRAFT_46031 [Melampsora larici-populina
98AG31]
Length = 279
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 98/183 (53%), Gaps = 17/183 (9%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 76
W V ++ P ++S M ++ NLN + D+ + +I L+ +L +Y+DT+G + +Q
Sbjct: 62 WNVKVMSPSDISMGMSRRSPYNLNAQAFDATVQIIQAALDHQYILQHIYVDTLGPPKTHQ 121
Query: 77 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF---- 132
L + FP++ F V KADS+YP+VS ASIVAKVTRD + W+F E + +
Sbjct: 122 LNLQKAFPNLHFTVCSKADSIYPIVSAASIVAKVTRDAIVENWMFVELSIGKRKRLEESQ 181
Query: 133 ------------GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI-VEVLW 179
GSGYP DP T AWL H +FG+P L RFSW T + D +V W
Sbjct: 182 DDDDDSIWNLPTGSGYPADPNTTAWLKSHFDKVFGYPQLARFSWATVKTLLADRGAQVTW 241
Query: 180 ESD 182
+
Sbjct: 242 NDE 244
>gi|448537761|ref|XP_003871401.1| Rnh35 ribonuclease H2 catalytic subunit [Candida orthopsilosis Co
90-125]
gi|380355758|emb|CCG25276.1| Rnh35 ribonuclease H2 catalytic subunit [Candida orthopsilosis]
Length = 375
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 104/179 (58%), Gaps = 8/179 (4%)
Query: 15 FGWAVDIIDPRELSAKMLNK----NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
GWA + +++S+ ML NLNE +HD+ I LI V+ G+ +TE+Y+DTVG
Sbjct: 164 IGWATTTMTAKDISSGMLRSVHGIGAYNLNEQAHDATINLIKSVIEQGVNVTEIYVDTVG 223
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
YQAKL + FP+I V+KKADS+YP+VS AS+VAKVTRD +R + H+
Sbjct: 224 PPISYQAKLKKHFPTIDITVAKKADSIYPIVSTASVVAKVTRDLNIRHYNTHLPLLQDHK 283
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEVLWESDEMDE 186
GSGYP DP T WL + +FG+ +RFSW T V+V+++ D + E
Sbjct: 284 -LGSGYPSDPNTSYWLNHNVDPVFGWCFGFIRFSWQTAKDALIRHGAVDVIYQDDCVKE 341
>gi|451994868|gb|EMD87337.1| hypothetical protein COCHEDRAFT_1197453 [Cochliobolus
heterostrophus C5]
Length = 343
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 14/215 (6%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA ++ +++SA ML + NLN + D+ I LI VL G+ + E+Y+DT+G E Y
Sbjct: 127 GWATRLLSAQDISAHMLQPSVYNLNAQAMDATIDLIKEVLVKGVNVKEIYIDTIGKPEIY 186
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---------RGWIFEETAE 126
Q KL + +P+I V+KKADSLYPVVS AS+ AKVTRD L R E
Sbjct: 187 QKKLERIWPTISITVAKKADSLYPVVSAASVCAKVTRDAALDVCYEPYHSRTDPEAEDGA 246
Query: 127 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF---KDIVEVLW--ES 181
+ +GSGYPGD T AW+ + +FG+ + RFSWGT K V + W E
Sbjct: 247 QVQAAWGSGYPGDARTSAWMKQNMDPLFGWGNETRFSWGTAKEMLEGKKADVSIDWPAED 306
Query: 182 DEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 216
D D ++ +GK + +++ KR +EE+E
Sbjct: 307 DGNDMRMTDFFNGKNEAISNELVDWFGKRVTEEME 341
>gi|46107902|ref|XP_381010.1| hypothetical protein FG00834.1 [Gibberella zeae PH-1]
Length = 338
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 10/166 (6%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA + R++ A M N NLN + D+ + LI V G+ + E+++DT+G Y
Sbjct: 128 GWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQEIFVDTIGQPAAY 187
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN---- 131
QAKL + FP++K +V+KKADSLYP VS AS+ AKVTRD L +FE A+ +
Sbjct: 188 QAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAKVTRDAALE-VLFEARADGEEKGGEAM 246
Query: 132 -FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
+GSGYP D +W+ ++ H +FG+ RFSWGT KD++E
Sbjct: 247 AWGSGYPSDGNCVSWMKNNMHPVFGWGPECRFSWGTA----KDMLE 288
>gi|156063040|ref|XP_001597442.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980]
gi|154696972|gb|EDN96710.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 361
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 106/185 (57%), Gaps = 15/185 (8%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWAVD++ R++ A M+ NLN + DS I LI V++ G+ + E+Y+D +G+ Y
Sbjct: 135 GWAVDVLSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALGNTVTY 194
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----RGWIFEETAENM--- 128
Q KL + FP+ + V+KKADSLYP VS AS+ AKVTRD L ++ ++ + M
Sbjct: 195 QKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALETLYESYVSKDGDQEMGGT 254
Query: 129 ---HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI----VEVLWES 181
++GSGYP D AWL + IFG+ S RFSWGT T D+ +V W
Sbjct: 255 EVAEDSWGSGYPSDARATAWLKRNMDPIFGWGSECRFSWGT-TKDMLDLKGVAAKVDWPI 313
Query: 182 DEMDE 186
+E DE
Sbjct: 314 EEDDE 318
>gi|401884266|gb|EJT48435.1| hypothetical protein A1Q1_02567 [Trichosporon asahii var. asahii
CBS 2479]
Length = 301
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 110/181 (60%), Gaps = 19/181 (10%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE-VYLDTVGDAEKYQAKLS 80
+ P+ +SA ML K INLN+ + D+ +GLI L+ GI + E ++D +G ++ +Q KLS
Sbjct: 97 LAPQAISAAMLRKVPINLNQQAQDATMGLIRAALDRGINVQEQCFVDALGPSQVWQDKLS 156
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI------------FEETAENM 128
FP+IKF+V KADSL+ +V ASIVAKVTRDR + GW+ +E AE +
Sbjct: 157 AEFPTIKFLVCPKADSLFKIVGAASIVAKVTRDRYIEGWVDAEGPMPGSAGAGDEEAEEL 216
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
R GSGYP DP+T+A+L +FG+ +VRFSW T K ++E S + +DV
Sbjct: 217 IR--GSGYPSDPKTQAFLRQQLDPVFGYRGMVRFSWAT----VKVLLEKQGHSCQWADDV 270
Query: 189 S 189
S
Sbjct: 271 S 271
>gi|190344386|gb|EDK36053.2| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
6260]
Length = 343
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 11/185 (5%)
Query: 16 GWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GWA + R++S+ ML NLNE +H++ I LI VL+ G+ + +V++DTVG
Sbjct: 139 GWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDSGVNVKKVFVDTVGP 198
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL FP+++ V+KKADS++P+VS AS+VAKVTRD + + ++ A +
Sbjct: 199 PATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIH-YYHDQLALLQGKV 257
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI--VEVLWESD-EMDE-- 186
GSGYP DP T WL + +FG+ LVRFSW T K+ V V++E+D E D
Sbjct: 258 IGSGYPSDPNTSTWLHANVDPVFGWCPLVRFSWQTAKDSLKNHHGVSVVYEADCEKDPGY 317
Query: 187 -DVSS 190
DVSS
Sbjct: 318 GDVSS 322
>gi|330925767|ref|XP_003301184.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
gi|311324289|gb|EFQ90711.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
Length = 332
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 119/217 (54%), Gaps = 20/217 (9%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA ++ +++SA ML+ + NLN + D+ I LI VL G+ +TE+Y+DT+G E Y
Sbjct: 118 GWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYIDTIGKPEIY 177
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN---- 131
Q KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD L + E HRN
Sbjct: 178 QRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALD--VCYEPYH--HRNEAER 233
Query: 132 -------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF---KDIVEVLW-- 179
+GSGYP D T WL + +FG+ S RFSWGT K V V W
Sbjct: 234 GADVKVVWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKELLEGKKADVSVDWPV 293
Query: 180 ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 216
E D D ++ GK + ++ KR +EE+E
Sbjct: 294 EDDSNDMRMTDFFVGKNESVSDELVDWFGKRVTEEME 330
>gi|449300186|gb|EMC96198.1| hypothetical protein BAUCODRAFT_122230 [Baudoinia compniacensis
UAMH 10762]
Length = 335
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 93/154 (60%), Gaps = 3/154 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA + R++SA L N NLN + D+ + LI +VL++G+ + EVY+DT+G
Sbjct: 126 GWATRSMSARDISAAQLKANGAYNLNAQAMDATVDLIQQVLDLGVNVCEVYIDTIGPPAT 185
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 132
YQ +L + FPS+ V+KKADSLYP VS AS+ AKVTRD +L + E A+ +
Sbjct: 186 YQKRLERIFPSLSITVAKKADSLYPCVSAASVCAKVTRDASLDVLYSTYAEIADCGEMAW 245
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GSGYP D WL + H +FG+ RFSWGT
Sbjct: 246 GSGYPSDGRCTTWLKGNMHPLFGWGHECRFSWGT 279
>gi|241957291|ref|XP_002421365.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
gi|223644709|emb|CAX40699.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
Length = 366
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 10/174 (5%)
Query: 15 FGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
GWA + R++S+ ML K NLNE +HD+ I LI +VL G+ ++++++DTVG
Sbjct: 156 IGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTIDLIKQVLAKGVKISKIFVDTVG 215
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH- 129
YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++ + E +
Sbjct: 216 PPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--FYNENLPLLQG 273
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEVLWE 180
+ GSGYP DP T WL + +FG+ +RFSW T + EV++E
Sbjct: 274 QKLGSGYPSDPNTNKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAEVVYE 327
>gi|68469222|ref|XP_721398.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|68470247|ref|XP_720885.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|77022682|ref|XP_888785.1| hypothetical protein CaO19_6562 [Candida albicans SC5314]
gi|46442777|gb|EAL02064.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|46443315|gb|EAL02598.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|76573598|dbj|BAE44682.1| hypothetical protein [Candida albicans]
Length = 431
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 103/173 (59%), Gaps = 10/173 (5%)
Query: 16 GWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GWA + R++S+ ML K NLNE +HD+ I LI +VL G+ ++++++DTVG
Sbjct: 221 GWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQVLAKGVKISKIFVDTVGP 280
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-R 130
YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++ + E + +
Sbjct: 281 PVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--FYNENLPLLQGQ 338
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEVLWE 180
GSGYP DP T WL + +FG+ +RFSW T + EV++E
Sbjct: 339 KLGSGYPSDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAEVVYE 391
>gi|237844165|ref|XP_002371380.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
gi|211969044|gb|EEB04240.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
Length = 366
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 80/105 (76%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
FGW++ I E+SAKML K K +LNEISHD+AI LI R + G+ +TEV++DTVG+A
Sbjct: 84 FGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEVFVDTVGNANA 143
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 119
YQAKL FPSIK V++KADSL+PVVS ASI+AKVTRDR L W
Sbjct: 144 YQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVTRDRMLVRW 188
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSS 190
FGSGYPGD ET A+L + +FGF VRFSW T F K V V W DE+D++ S
Sbjct: 264 FGSGYPGDSETIAFLNRNCDPVFGFDGFVRFSWSTARLIFEKRGVPVDW-YDEVDDEAGS 322
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
S +Q ++++ F ++KR E + G R F KL+ L++
Sbjct: 323 GASEAKQSRITN--FFAAKR---EATAGGIERPAFFLRSKLQLLSNL 364
>gi|238883322|gb|EEQ46960.1| ribonuclease HI large subunit [Candida albicans WO-1]
Length = 427
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 103/173 (59%), Gaps = 10/173 (5%)
Query: 16 GWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GWA + R++S+ ML K NLNE +HD+ I LI +VL G+ ++++++DTVG
Sbjct: 218 GWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQVLAKGVKISKIFVDTVGP 277
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-R 130
YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++ + E + +
Sbjct: 278 PVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--FYNENLPLLQGQ 335
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEVLWE 180
GSGYP DP T WL + +FG+ +RFSW T + EV++E
Sbjct: 336 KLGSGYPSDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAEVVYE 388
>gi|221481429|gb|EEE19819.1| ribonuclease HI large subunit, putative [Toxoplasma gondii GT1]
gi|221501972|gb|EEE27722.1| ribonuclease HI large subunit, putative [Toxoplasma gondii VEG]
Length = 366
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 80/105 (76%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
FGW++ I E+SAKML K K +LNEISHD+AI LI R + G+ +TEV++DTVG+A
Sbjct: 84 FGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEVFVDTVGNANA 143
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 119
YQAKL FPSIK V++KADSL+PVVS ASI+AKVTRDR L W
Sbjct: 144 YQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVTRDRMLVRW 188
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSS 190
FGSGYPGD ET A+L + +FGF VRFSW T F K V V W DE+D++ S
Sbjct: 264 FGSGYPGDSETIAFLNRNCDPVFGFDGFVRFSWSTARLIFEKRGVPVDW-YDEVDDEAGS 322
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
S +Q ++++ F ++KR E + G R F KL+ L++
Sbjct: 323 GASEAKQSRITN--FFAAKR---EATAGGIERPAFFLRSKLQLLSNL 364
>gi|346972898|gb|EGY16350.1| ribonuclease H2 subunit A [Verticillium dahliae VdLs.17]
Length = 351
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 105/185 (56%), Gaps = 16/185 (8%)
Query: 16 GWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+AV + R++++ ML+ N NLN + D+ + +I V+ G+ + E+Y+DTVG
Sbjct: 137 GYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEIIKGVIARGVRVEEIYVDTVGQPAA 196
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR-----------GWIFEE 123
YQAKL + FPS+K V+KKADSLYP VS AS+ AKVTRD L G E
Sbjct: 197 YQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKVTRDAALEVMYEAHKAANGGHAGTE 256
Query: 124 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVLWES 181
E M +GSGYP D +WL + H +FG+ S RFSWGT K V+V W
Sbjct: 257 DGEGMA--WGSGYPSDARCVSWLRGNMHPVFGWGSECRFSWGTAKDMLDGKGGVKVDWPV 314
Query: 182 DEMDE 186
DE ++
Sbjct: 315 DETED 319
>gi|313230305|emb|CBY08009.1| unnamed protein product [Oikopleura dioica]
Length = 195
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGDAE 73
G+ ++ P +S ML + K NLNE+SHD+AI +I R ++ GI + V++DTVG E
Sbjct: 46 IGYTGVVLPPAYISKSMLRRIKYNLNEMSHDTAISMIRRAIDYHGINVKSVFVDTVGKPE 105
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
KYQ KL + FP + V KAD+ YP+V ASI+AKVTRD+ + W E + N G
Sbjct: 106 KYQDKLLRYFPQLSIKVESKADATYPIVGAASIIAKVTRDKLVHNWDHVEPSVNKSIEVG 165
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 164
SGYPGDP+TK W+ H IFG L FS+
Sbjct: 166 SGYPGDPKTKNWIRQHLDHIFGV-GLNSFSY 195
>gi|146421659|ref|XP_001486774.1| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
6260]
Length = 343
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 16 GWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GWA + R++S+ ML NLNE +H++ I LI VL++G+ + +V++DTVG
Sbjct: 139 GWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDLGVNVKKVFVDTVGP 198
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL FP+++ V+KKADS++P+VS AS+VAKVTRD + + ++ A +
Sbjct: 199 PATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIH-YYHDQLALLQGKV 257
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI--VEVLWESD 182
GSGYP DP T WL + +FG+ LVRF W T K+ V V++E+D
Sbjct: 258 IGSGYPSDPNTSTWLHANVDPVFGWCPLVRFLWQTAKDSLKNHHGVSVVYEAD 310
>gi|451846155|gb|EMD59466.1| hypothetical protein COCSADRAFT_30912 [Cochliobolus sativus ND90Pr]
Length = 343
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 116/215 (53%), Gaps = 14/215 (6%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA ++ +++SA ML + NLN + D+ I LI VL G+ + E+Y+DT+G E Y
Sbjct: 127 GWATRLLSAQDISAHMLQPSVYNLNAQAMDATIDLIKEVLAKGVNVKEIYIDTIGKPEIY 186
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---------RGWIFEETAE 126
Q KL + +P+I V+KKADSLYPVVS AS+ AKVTRD L R E
Sbjct: 187 QKKLERIWPTISITVAKKADSLYPVVSAASVCAKVTRDAALDVCYEPYHSRTDPEAEDGA 246
Query: 127 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF---KDIVEVLW--ES 181
+ +GSGYP D T AW+ + +FG+ + RFSWGT K V + W E
Sbjct: 247 QVQAAWGSGYPSDARTSAWMKQNMDPLFGWGNETRFSWGTAKEMLEGKKADVSIDWPAED 306
Query: 182 DEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 216
D D ++ +GK + ++ KR +EE+E
Sbjct: 307 DGNDMRMTDFFNGKNEAIGDELVDWFGKRVTEEME 341
>gi|402224753|gb|EJU04815.1| ribonuclease H-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 312
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+V ++ P +S ML + NLN S ++ + ++ +L G+ +T++++D +G +
Sbjct: 110 LGWSVQVLAPSSISQGMLARPPTNLNVQSQNATVHILRSLLQAGLNITQIFVDALGPSVP 169
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQ L FPS + V KADS+Y +V AS+ AK RD + W++EE + GS
Sbjct: 170 YQKYLQSLFPSAEVTVCPKADSIYEIVGAASVAAKTCRDAWMESWVWEEEGMPPGQELGS 229
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSW 164
GYP DP+T+AW+ + FG+P LVRFSW
Sbjct: 230 GYPSDPKTQAWIANRLEKTFGYPRLVRFSW 259
>gi|255731726|ref|XP_002550787.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
gi|240131796|gb|EER31355.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
Length = 356
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 96/163 (58%), Gaps = 5/163 (3%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVY 65
K S GWA + R++S+ ML K NLN +HD I LI +VL G+ +++++
Sbjct: 141 KGLSKVIGWATTSMTARDISSGMLQSSGKGAYNLNSQAHDVTINLIKQVLKKGVKISKIF 200
Query: 66 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 125
+DTVG YQAKL FP I+ V+KKADS+YP+VS AS+VAKVTRD+ + +
Sbjct: 201 VDTVGPPATYQAKLKGIFPDIEITVAKKADSIYPIVSAASVVAKVTRDKNIAYYNNHLDI 260
Query: 126 ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTC 167
H+ GSGYP DP TK WL + IFG+ RFSW T
Sbjct: 261 LKGHK-LGSGYPSDPNTKTWLNSNVDSIFGWCFGFARFSWATA 302
>gi|150864655|ref|XP_001383577.2| hypothetical protein PICST_31007 [Scheffersomyces stipitis CBS
6054]
gi|149385911|gb|ABN65548.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 347
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 104/179 (58%), Gaps = 8/179 (4%)
Query: 16 GWAVDIIDPRELSAKMLNK----NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GWA + R++S+ ML NLNE +HD+ I LI V+ G+ + ++Y+DTVG
Sbjct: 138 GWATTTMTARDISSGMLRSVLGIGNYNLNEQAHDTTIQLIKEVIAKGVNVKKIYVDTVGP 197
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQAKL + FP + V+KKADS+YP+VS AS++AKVTRD +R + H+
Sbjct: 198 PVTYQAKLQKIFPETEVTVAKKADSIYPIVSTASVMAKVTRDANIRWYNHNLDVLKGHK- 256
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEVLWESDEMDED 187
GSGYP DP T WL + +FG+ +RFSW T D VEV++E + + +D
Sbjct: 257 LGSGYPSDPNTSKWLNGNVDKVFGWCYGFIRFSWQTAKDSLVKHDGVEVIYEDECVKQD 315
>gi|344299617|gb|EGW29970.1| hypothetical protein SPAPADRAFT_63592 [Spathaspora passalidarum
NRRL Y-27907]
Length = 355
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 101/172 (58%), Gaps = 8/172 (4%)
Query: 16 GWAVDIIDPRELSAKMLNKNK----INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GWA + +++S+ ML NLNE +HD+ I LI +VL G+ +TEV++DTVG
Sbjct: 146 GWATTTMTAKDISSGMLQSTAGTGAYNLNEQAHDTTIELIKQVLAKGVNVTEVFVDTVGP 205
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL FP I VV+KKADS+YP+VS AS+VAKVTRD ++ + E +
Sbjct: 206 PITYQNKLKSLFPGIDIVVTKKADSIYPIVSTASVVAKVTRDLNIQ-YYNESLPILQNHA 264
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEVLWE 180
GSGYP DP T WL + +FG+ +R+SW T + VEV++E
Sbjct: 265 LGSGYPSDPNTSKWLNSNVDPVFGWCFGFIRYSWQTAKDSLVKNNAVEVIYE 316
>gi|407917906|gb|EKG11206.1| Ribonuclease HII/HIII [Macrophomina phaseolina MS6]
Length = 332
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 115/210 (54%), Gaps = 11/210 (5%)
Query: 16 GWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA ++ ++SA ML N NLN + D+ I LI RV +G+ + E+Y+DT+G
Sbjct: 123 GWATKVMSALDISAGMLKANGTYNLNAQAMDATIELIKRVFAMGVNVKEIYIDTIGSPAV 182
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN-----MH 129
YQ KL + FP+++ V+KKADSLYP VS AS+ AKVTRD L +E A +
Sbjct: 183 YQKKLERIFPTVQITVAKKADSLYPCVSAASVCAKVTRDAALD-VCYETYASSDGETVAA 241
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI---VEVLWESDEMD- 185
+GSGYP D WL + +FG+ RFSWGT +D ++V W D+ D
Sbjct: 242 DGWGSGYPSDARCSGWLKRNMDPLFGWGPECRFSWGTAKDMLEDKKTGLKVEWPVDDEDG 301
Query: 186 EDVSSRRSGKRQLKLSDIGFSSSKRRSEEI 215
++S+ SG + ++ KR SEE+
Sbjct: 302 MNISAYFSGGQDDGGDELSNWFGKRVSEEV 331
>gi|134114978|ref|XP_773787.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256415|gb|EAL19140.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 326
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 101/181 (55%), Gaps = 28/181 (15%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---------- 63
P ++ + P+++S+ ML K INLN + D+ +GLI LN GI +TE
Sbjct: 96 PLCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTEASFSCSLAAS 155
Query: 64 --------VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 115
Y+D +G A ++QA+L+ FP+IKF V KADSL+ +V ASIVAKVTRDR
Sbjct: 156 CWLTICLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRY 215
Query: 116 LRGWIFEETAENMHRNF----------GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 165
+ GW+ E + + GSGYP DP+T+A+L +FG+ +VRFSW
Sbjct: 216 VHGWVDPEDVIHSATHIKSQDEEEVIRGSGYPSDPKTQAYLKGSIDPVFGYKGIVRFSWA 275
Query: 166 T 166
T
Sbjct: 276 T 276
>gi|189195170|ref|XP_001933923.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979802|gb|EDU46428.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 342
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 15/215 (6%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA ++ +++SA ML+ + NLN + D+ I LI VL G+ +TE+Y+DT+G E Y
Sbjct: 127 GWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYIDTIGKPEIY 186
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE---------ETAE 126
Q KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD L +E E
Sbjct: 187 QRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALDV-CYEPYHNRNNEAERGT 245
Query: 127 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF---KDIVEVLW--ES 181
++ +GSGYP D T WL + +FG+ S RFSWGT K V + W E
Sbjct: 246 DVKVAWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKELLEGKKADVSIDWPVED 305
Query: 182 DEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 216
D D ++ GK + ++ KR +EE+E
Sbjct: 306 DGNDMRMTDFFVGKNESVGDELVDWFGKRVTEEME 340
>gi|156375344|ref|XP_001630041.1| predicted protein [Nematostella vectensis]
gi|156217054|gb|EDO37978.1| predicted protein [Nematostella vectensis]
Length = 569
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 97/155 (62%), Gaps = 5/155 (3%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW +DI+ P LS ML + K +LNE+SH+SAIGLI +L+ G+ + EVY+DTVG AEK
Sbjct: 350 MGWVIDILTPNFLSNCMLQRTKCSLNEVSHNSAIGLIRLLLDSGVKVQEVYVDTVGPAEK 409
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQ KL + FP K VV+ KAD+ +PVVS AS+ AKV+RDR + W F E + GS
Sbjct: 410 YQDKLQKIFPEQKIVVTPKADAKFPVVSAASVCAKVSRDRVISAWEFSEDI-IFTKETGS 468
Query: 135 GYPGDPETKAWL-TDHK---HIIFGFPSLVRFSWG 165
GYP ++ L T++ H+ +PS V G
Sbjct: 469 GYPSGYQSGGHLHTEYPSGGHLHTEYPSGVHLYTG 503
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW +DI+ P LS ML + K +LNE+SH+SAIGLI +L+ G+ + EVY+DTVG AEK
Sbjct: 91 MGWVIDILTPNFLSNCMLQRTKCSLNEVSHNSAIGLIRLLLDSGVKVQEVYVDTVGPAEK 150
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 112
YQ KL + FP K VV+ KAD+ +PVVS AS+ AK T
Sbjct: 151 YQDKLQKIFPEQKIVVTPKADAKFPVVSAASVCAKGTH 188
>gi|149235450|ref|XP_001523603.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452582|gb|EDK46838.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
YB-4239]
Length = 414
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 97/160 (60%), Gaps = 11/160 (6%)
Query: 16 GWAVDIIDPRELSAKML-----NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
GWA + +++S ML K NLNE +HD+ I LI +L+ G+ +T +Y+DTVG
Sbjct: 203 GWATTTMTAKDISLGMLRLVSNGKGVYNLNEQAHDATIELIRLILSKGVNITAIYVDTVG 262
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
YQAKL + FP+I V+KKADS+YP+VS AS+VAKVTRD L+ + N+ +
Sbjct: 263 PPATYQAKLKKLFPTIDITVTKKADSIYPIVSTASVVAKVTRDLNLK---YANQHINLLK 319
Query: 131 N--FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTC 167
N GSGYP DP T WL + IFG+ +RFSW T
Sbjct: 320 NHALGSGYPSDPNTSFWLNHNVDPIFGWCFGFIRFSWQTA 359
>gi|358378191|gb|EHK15873.1| hypothetical protein TRIVIDRAFT_39184 [Trichoderma virens Gv29-8]
Length = 335
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 103/190 (54%), Gaps = 23/190 (12%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA + R++ A M+ NLN + D+ + LI V G+ + E+Y+DT+G Y
Sbjct: 117 GWATTALSARDIGANMMKPVSYNLNAQAMDATMDLIRAVYAKGVNIKEIYVDTIGPPATY 176
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF------------EE 123
QAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L E
Sbjct: 177 QAKLQRVFPTAKVTVAKKADSLYACVSAASVCAKVTRDAALETLFHARQVATAATNGEEA 236
Query: 124 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE------- 176
+E++ +GSGYP D +T WL ++ H +FG+ S RFSWGT KD++E
Sbjct: 237 PSEDIPMEWGSGYPSDSKTVGWLRNNMHPLFGWGSECRFSWGTA----KDMLESKGNGIK 292
Query: 177 VLWESDEMDE 186
+ W +D+ E
Sbjct: 293 IEWPADDDGE 302
>gi|405122261|gb|AFR97028.1| ribonuclease HI large subunit [Cryptococcus neoformans var. grubii
H99]
Length = 326
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 33/227 (14%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---------- 63
P ++ + P+++S+ ML K INLN + D+ + LI LN GI +TE
Sbjct: 96 PLCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVDLIQTALNRGINVTEASFSCSLEAS 155
Query: 64 --------VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 115
Y+D +G A ++QA+L+ FP+IKF V KADSL+ +V ASIVAKVTRDR
Sbjct: 156 CWLTISLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRY 215
Query: 116 LRGWIFEETAENMHRNF----------GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 165
+ GW+ E + + GSGYP DP+T+A+L + +FG+ +VRFSW
Sbjct: 216 VHGWVDPEDVVHGATDIKSQDEEEVIRGSGYPSDPKTQAYLKESIDPVFGYKGIVRFSWA 275
Query: 166 TCTSHF-KDIVEVLWESDEMDEDV----SSRRSGKRQLKLSDIGFSS 207
T K VE W D S+ +R D+G SS
Sbjct: 276 TVKVLLDKQGVESKWIDDTTQRSAANWFSADADNERPKVWRDLGVSS 322
>gi|378734851|gb|EHY61310.1| ribonuclease H2 subunit A [Exophiala dermatitidis NIH/UT8656]
Length = 340
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 109/189 (57%), Gaps = 20/189 (10%)
Query: 16 GWAVDIIDPRELSAKML-NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA+ + +++ A ML N NLN + D+ + LI VL+ G+ +TE+Y+DT+G E
Sbjct: 122 GWAIKSLSAQDIGAGMLKNGGCYNLNAQAMDATVELIRGVLDRGVNVTEIYVDTIGKPEV 181
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT----LRGWIFEE---TAEN 127
YQ +LSQ FP+IK V KKADSL+P VS AS+VAKVTRD + L ++ + ++E
Sbjct: 182 YQRRLSQIFPTIKITVEKKADSLFPCVSAASVVAKVTRDVSCEALLEAYVQQNPSSSSEE 241
Query: 128 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE--------VLW 179
+GSGYP D +WL ++GF + RFSWGT KD++E W
Sbjct: 242 EPVTWGSGYPSDARCVSWLKSAIDPVWGFGNECRFSWGT----VKDMLEQKGGPATRTDW 297
Query: 180 ESDEMDEDV 188
D DE++
Sbjct: 298 PDDTADENM 306
>gi|444526357|gb|ELV14308.1| Ribonuclease H2 subunit A [Tupaia chinensis]
Length = 244
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Query: 55 LNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDR 114
L+ T V++DTVG + YQ +L QRFP I+ V KAD+L+PVVS ASI AKV RD+
Sbjct: 74 LDTPTWPTMVFVDTVGLPDTYQERLQQRFPGIEVTVKAKADALFPVVSAASICAKVARDQ 133
Query: 115 TLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KD 173
++ W F E +++ ++GSGYP DP+TK+WL H +FGFP VRFSW T + K+
Sbjct: 134 AVKNWQFVEELQDLDVDYGSGYPNDPKTKSWLKKHVDPVFGFPQFVRFSWRTAQAILEKE 193
Query: 174 IVEVLWESDEMDE 186
V WE +E
Sbjct: 194 AEAVTWEDSSPEE 206
>gi|340521578|gb|EGR51812.1| predicted protein [Trichoderma reesei QM6a]
Length = 347
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 11/185 (5%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA + R++ A M+ NLN + D+ I LI V G+ + E+Y+DT+G Y
Sbjct: 131 GWATTALSARDIGANMMRPVSYNLNAQAMDATIDLIRAVYAKGVNVKEIYVDTIGPPATY 190
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE--------TAEN 127
QAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L A +
Sbjct: 191 QAKLQRVFPTAKVTVAKKADSLYACVSAASVCAKVTRDAALETLFHARQAASAAAAAAAD 250
Query: 128 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK---DIVEVLWESDEM 184
+GSGYP D +T AWL ++ H +FG+ RFSWGT + + V++ W +D+
Sbjct: 251 GPMEWGSGYPSDAKTVAWLRNNMHPLFGWGPECRFSWGTAKDMLESKGNGVKIEWPADDD 310
Query: 185 DEDVS 189
D + S
Sbjct: 311 DGETS 315
>gi|296422347|ref|XP_002840722.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636945|emb|CAZ84913.1| unnamed protein product [Tuber melanosporum]
Length = 336
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 15/167 (8%)
Query: 15 FGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
GW+ + PR++S+ ML + + NLN + D+ LIT VL+ G+ + E+Y+DTVG
Sbjct: 128 LGWSTISLSPRDISSGMLRSTTSSSTYNLNAQAFDATTTLITAVLSSGVNIREIYVDTVG 187
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
A YQ++L + FP I VSKKADS+YP+VS AS+ AKVTRD + G + E E
Sbjct: 188 TASTYQSRLQKLFPHIAVTVSKKADSIYPIVSAASVCAKVTRDAAI-GVLVPEGEE---- 242
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIVE 176
GSGYPGD +TK WL +FG+ + RFSW T +D++E
Sbjct: 243 -IGSGYPGDEKTKEWLRREMEPVFGWEVGMARFSWATA----RDMLE 284
>gi|402466642|gb|EJW02092.1| ribonuclease HII [Edhazardia aedis USNM 41457]
Length = 250
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 10/159 (6%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAE 73
+ + I P+ +S +M ++ LN+I++ I ++ ++N + ++ VYLD +G
Sbjct: 82 YSYVYTAIHPQYISHQMSVES---LNDIAYKVVINILKTIVNSKLYNISCVYLDALGPNT 138
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
Y L + FP IKFVV KADS YPVV+GASIVAKVTRDR LR W + + FG
Sbjct: 139 TYMRILEKNFPKIKFVVECKADSTYPVVAGASIVAKVTRDRLLRNWPVTD------KKFG 192
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 172
SGYPGD T+ WL + +FGFP++VRFSW T FK
Sbjct: 193 SGYPGDDVTRKWLERNFCPVFGFPNIVRFSWKTVKQFFK 231
>gi|156842375|ref|XP_001644555.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156115201|gb|EDO16697.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 312
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 109/180 (60%), Gaps = 15/180 (8%)
Query: 16 GWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
G+A I P ++S+ ML NLNE +HD + LI ++ G+ + VY+DTVG
Sbjct: 110 GYATTAITPVDISSGMLRYPPSQNYNLNEQAHDVTMNLIQGLVEKGVTIDHVYVDTVGPP 169
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
YQ KL RFP+IKF V+KKADSLY VVS AS+VAKVTRD I E+ N +
Sbjct: 170 VSYQKKLETRFPNIKFTVAKKADSLYCVVSVASVVAKVTRDI-----ILEQMKSNENEIL 224
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKD------IVEVLWESDEMD 185
GSGYP DP+T AWL ++ +F +P SLVRFSW TC + K+ +V + WE D ++
Sbjct: 225 GSGYPSDPKTTAWLAKNQKQLFAWPQSLVRFSWQTCQTLIKEDKHKIGMVPIEWEEDYIN 284
>gi|212538023|ref|XP_002149167.1| ribonuclease HI large subunit [Talaromyces marneffei ATCC 18224]
gi|210068909|gb|EEA23000.1| ribonuclease HI large subunit [Talaromyces marneffei ATCC 18224]
Length = 368
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 110/196 (56%), Gaps = 26/196 (13%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 72
GWAV ++ R++SA M+ + NLN + D+ I +I VLN I +TEVY+DT+G+
Sbjct: 139 GWAVKLLSARDISAGMMRPSTGVYNLNAQAMDATIEIIRGVLNEKHINVTEVYIDTIGNP 198
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----RGWIFEETAENM 128
YQAKL + FP++ V+KKADSLYP VS AS+VAKVTRD L + + +E ++++
Sbjct: 199 ATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRDVALESCYQAFYQQEPSQDV 258
Query: 129 H-----------------RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 171
+GSGYP D + WL + +FG+ + RFSWGT
Sbjct: 259 EDTDMKDSETTPATKKEAAGWGSGYPSDSKCVNWLRQNMDSVFGWGNECRFSWGTAKEML 318
Query: 172 --KDIVEVLWESDEMD 185
KD + V W +DE D
Sbjct: 319 EGKDAIRVDWPADEDD 334
>gi|440638129|gb|ELR08048.1| hypothetical protein GMDG_02886 [Geomyces destructans 20631-21]
Length = 397
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 108/218 (49%), Gaps = 30/218 (13%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWAV ++ R +SA M+ NLNE + D+ I LI V +G+ + E+Y+DT+G Y
Sbjct: 169 GWAVSVLSARAISANMMRPAMYNLNEQAMDATIHLIKTVYEMGVNVREIYIDTIGQPGPY 228
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR------GWIFEETA---- 125
Q KL + FP+ V+KKADSLYP VS AS+ AKVTRDR L G E+ A
Sbjct: 229 QKKLERIFPTASITVAKKADSLYPCVSAASVCAKVTRDRALEVLYEAYGGSNEDAAGKED 288
Query: 126 ---------ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD--- 173
++GSGYP D WL + +FG+ RFSW T +D
Sbjct: 289 VTMGDSEDEPAPEADWGSGYPSDARCSTWLKRNIDPVFGWGPECRFSWSTTKDLLEDNKA 348
Query: 174 -IVEVLWESDEMDEDVS------SRRSGKRQLKLSDIG 204
V W ++E DED S SGK Q ++G
Sbjct: 349 MAAHVDWPAEE-DEDTHRVTDYFSADSGKEQKADDELG 385
>gi|389603175|ref|XP_001568699.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505755|emb|CAM43828.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 318
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 107/190 (56%), Gaps = 20/190 (10%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAEKYQAKLS 80
+ P E+S+ M ++ NLN +SH++A+ +I+ L L Y+DTVG + YQA+L+
Sbjct: 113 VSPEEISSTMTGRSGRNLNTLSHETAVHIISEATLASAGKLCAAYVDTVGPPDTYQARLA 172
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
RFP ++ V+KKADS +P+VS ASIVAK TRD + + + N GSGYP DP
Sbjct: 173 GRFPHLRVTVAKKADSKFPIVSAASIVAKTTRDTAI---------QELGENIGSGYPSDP 223
Query: 141 ETKAWLTDHKHIIFGFPSL---VRFSWGTCTSHFKD---IVEVLWESDEMDEDVSSR--R 192
AWL H H F F + VR SWG D V V++E D +DE+ + R R
Sbjct: 224 RAIAWLRSHVHRFFVFRHVYGYVRHSWGPVVQLANDPAVCVPVVFEQD-LDEEAARRLER 282
Query: 193 SGK-RQLKLS 201
G RQ KLS
Sbjct: 283 GGDGRQQKLS 292
>gi|320591391|gb|EFX03830.1| ribonuclease hi large subunit [Grosmannia clavigera kw1407]
Length = 304
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 95/166 (57%), Gaps = 10/166 (6%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
GWA + R++ A ML NLN + D+ + LI VL G+ +T+VY+DTVG
Sbjct: 71 GWATAALSARDIGADMLAPASAAGSNLNAQAADATVALIRGVLARGVRVTDVYVDTVGPP 130
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE--TAENMHR 130
YQ KL + FP ++ V+KKADSLYP VS AS+ AKVTRD L ++ A
Sbjct: 131 ATYQKKLERVFPGLRITVAKKADSLYPCVSAASVCAKVTRDVAL-AVLYRRYGAASASEP 189
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
++GSGYP D AWL + H +FG+ RFSWGT KD++E
Sbjct: 190 DWGSGYPSDGRCTAWLRRNIHPVFGWGPECRFSWGTA----KDLLE 231
>gi|225684872|gb|EEH23156.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb03]
Length = 343
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 18/186 (9%)
Query: 16 GWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
GW V ++ R++S ML NLN + D+ I LI ++ +G+ + EVY+DTVG+
Sbjct: 125 GWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVYIDTVGNP 184
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----------RGWIFE 122
E YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L RG + +
Sbjct: 185 ETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALVKQRGAMEQ 244
Query: 123 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI--VEVLWE 180
E A + +GSGYP D + WL + +FG+ + RFSWGT + ++V W
Sbjct: 245 EGAAD---GWGSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTARELLESNRGIKVDWP 301
Query: 181 SDEMDE 186
DE DE
Sbjct: 302 VDEDDE 307
>gi|157876580|ref|XP_001686636.1| putative ribonuclease H [Leishmania major strain Friedlin]
gi|23477654|gb|AAN34793.1| ribonuclease H(35) [Leishmania major]
gi|56713264|gb|AAW23359.1| ribonuclease HIIB [Leishmania major]
gi|68129711|emb|CAJ09017.1| putative ribonuclease H [Leishmania major strain Friedlin]
Length = 301
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAEKYQAKLS 80
+ P E+S M ++ N N +SH++AI +I+ L L Y+DTVG E YQA+L+
Sbjct: 113 VSPEEISKTMTGRSGRNSNTLSHETAIQIISEATLASAGKLCAAYVDTVGPPETYQARLA 172
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
RFP ++ V+KKADS++P+VS ASIVAK RD + E + N GSGYP DP
Sbjct: 173 GRFPHLRVTVAKKADSIFPIVSAASIVAKTVRDTAI---------EALGENIGSGYPSDP 223
Query: 141 ETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKDI---VEVLWESDEMDEDVSSRRSG 194
T WL H H F FP R SWG D V V+ E D R
Sbjct: 224 RTMEWLRSHVHRFFSFPHAYDFARHSWGPLVQLANDPAVRVPVVCEQDLEGARQQGRGGD 283
Query: 195 KRQLKLS 201
RQ KLS
Sbjct: 284 SRQQKLS 290
>gi|323335818|gb|EGA77097.1| Rnh201p [Saccharomyces cerevisiae Vin13]
gi|365763336|gb|EHN04865.1| Rnh201p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 307
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 116/205 (56%), Gaps = 14/205 (6%)
Query: 15 FGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S +K NLNE +HD + LI V+ + L+ VY+DTVG
Sbjct: 100 IGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKLSHVYVDTVGP 159
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E +
Sbjct: 160 PASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRDPDEI 214
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF----KDIVEVLWESDEMDE 186
GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + KD + + WE MD
Sbjct: 215 LGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKDSIPIKWEEQYMDS 274
Query: 187 DVSSRRSGKRQLKLSDIGFSSSKRR 211
++ + K QL+L + ++R
Sbjct: 275 RKNAAQKTK-QLQLQMVAKPVRRKR 298
>gi|19114596|ref|NP_593684.1| ribonuclease H2 complex subunit Rnh201 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1723422|sp|Q10236.1|RNH2A_SCHPO RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|1204203|emb|CAA93552.1| ribonuclease H2 complex subunit Rnh201 (predicted)
[Schizosaccharomyces pombe]
Length = 326
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 99/166 (59%), Gaps = 14/166 (8%)
Query: 16 GWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+ I REL+A ML +NK NLN +HD+ I LI +V GI +TE+Y+DTVG
Sbjct: 128 GWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPIS 187
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR--NF 132
YQ KL FP K V+KKADSL+P+VS ASI AKVTRD L E A R N+
Sbjct: 188 YQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL------ECARESIRTENW 241
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIVEV 177
GSGY D T WL + IFG+ +VR+SW T KD++E+
Sbjct: 242 GSGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTA----KDLLEL 283
>gi|401623866|gb|EJS41947.1| rnh201p [Saccharomyces arboricola H-6]
Length = 307
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 116/211 (54%), Gaps = 17/211 (8%)
Query: 15 FGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S +K NLNE +HD + LI VL + L VY+DTVG
Sbjct: 100 IGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVLKQDVKLDHVYVDTVGP 159
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL QRFP KF V+KKADSLY +VS AS+VAKVTRD + E N
Sbjct: 160 PASYQKKLEQRFPDTKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRNPDEV 214
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF----KDIVEVLWESDEMDE 186
GSGYP DP+T AWL +++ + G+P+ +VRFSW TC + KD V + WE MD
Sbjct: 215 LGSGYPSDPKTVAWLKNNQTSLMGWPANMVRFSWQTCQTLLDNTTKDNVLIKWEEQYMD- 273
Query: 187 DVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 217
SR++ ++ K + + R + + +
Sbjct: 274 ---SRKNAAQKTKQLQLQMVTKPARGKRLRT 301
>gi|258569747|ref|XP_002543677.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903947|gb|EEP78348.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 352
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 107/184 (58%), Gaps = 14/184 (7%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 72
GWAV ++ R++SA M NLN + D+ + +I V+ G+ + EVY+DT+G+
Sbjct: 136 GWAVKLLSARDISAGMQRPGAGMYNLNAQAMDATVEIIRGVVEERGVDVKEVYIDTIGNP 195
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE--------ET 124
+ YQ KL FPS+K V+KKADSL+P VS AS+ AKVTRD L +E +
Sbjct: 196 QSYQKKLEMIFPSLKITVAKKADSLFPCVSAASVCAKVTRDSALD-ICYEALQKERVGKG 254
Query: 125 AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWESD 182
E+M+ +GSGYP D + +WL H +FG+ + RFSWGT K ++V W +D
Sbjct: 255 MEHMNDGWGSGYPSDSKCTSWLKKEMHPLFGWGNECRFSWGTAKELLEVKAGLKVDWPAD 314
Query: 183 EMDE 186
E +E
Sbjct: 315 EDEE 318
>gi|323346904|gb|EGA81183.1| Rnh201p [Saccharomyces cerevisiae Lalvin QA23]
Length = 307
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 116/205 (56%), Gaps = 14/205 (6%)
Query: 15 FGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S +K NLNE +HD + LI V+ + L+ VY+DTVG
Sbjct: 100 IGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKLSHVYVDTVGP 159
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E +
Sbjct: 160 PASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRDPDEI 214
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF----KDIVEVLWESDEMDE 186
GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + KD + + WE MD
Sbjct: 215 LGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKDSIXIKWEEQYMDS 274
Query: 187 DVSSRRSGKRQLKLSDIGFSSSKRR 211
++ + K QL+L + ++R
Sbjct: 275 RKNAAQKTK-QLQLQMVAKPVRRKR 298
>gi|342879882|gb|EGU81115.1| hypothetical protein FOXB_08389 [Fusarium oxysporum Fo5176]
Length = 339
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 96/168 (57%), Gaps = 11/168 (6%)
Query: 16 GWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA + R++ A M N NLN + D+ + LI V +G+ + E+Y+DT+G
Sbjct: 128 GWATASLSARDIGANMYRPTNAYNLNAQAMDATVDLIKAVYALGVNIQEIYVDTIGQPAA 187
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN--- 131
YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L +FE A+ ++
Sbjct: 188 YQAKLQRVFPTAKITVAKKADSLYACVSAASVCAKVTRDAALE-VLFEARADEDEKDGEG 246
Query: 132 --FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 177
+GSGYP D W+ + H +FG+ RFSWGT KD++E
Sbjct: 247 MAWGSGYPSDGRCVGWMKGNMHPVFGWGPECRFSWGTA----KDMLEA 290
>gi|323303245|gb|EGA57043.1| Rnh201p [Saccharomyces cerevisiae FostersB]
gi|349580865|dbj|GAA26024.1| K7_Rnh201p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 307
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 116/205 (56%), Gaps = 14/205 (6%)
Query: 15 FGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S +K NLNE +HD + LI V+ + L+ VY+DTVG
Sbjct: 100 IGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKLSHVYVDTVGP 159
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E +
Sbjct: 160 PASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRDPDEI 214
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF----KDIVEVLWESDEMDE 186
GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + KD + + WE MD
Sbjct: 215 LGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKDSILIKWEEQYMDS 274
Query: 187 DVSSRRSGKRQLKLSDIGFSSSKRR 211
++ + K QL+L + ++R
Sbjct: 275 RKNAAQKTK-QLQLQMVAKPVRRKR 298
>gi|151944462|gb|EDN62740.1| Rnh2A [Saccharomyces cerevisiae YJM789]
gi|259149289|emb|CAY82531.1| Rnh201p [Saccharomyces cerevisiae EC1118]
Length = 307
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 119/211 (56%), Gaps = 14/211 (6%)
Query: 15 FGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S +K NLNE +HD + LI V+ + L+ VY+DTVG
Sbjct: 100 IGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKLSHVYVDTVGP 159
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E +
Sbjct: 160 PASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRDPDEI 214
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF----KDIVEVLWESDEMDE 186
GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + KD + + WE MD
Sbjct: 215 LGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKDSILIKWEEQYMDS 274
Query: 187 DVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 217
++ + K QL+L + ++R +++
Sbjct: 275 RKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>gi|341039044|gb|EGS24036.1| hypothetical protein CTHT_0007470 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 363
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 100/185 (54%), Gaps = 27/185 (14%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
GWA+ + R++S+ ML + NLN + D+ + LI +V G+ +TE+Y+DT+G
Sbjct: 131 GWAITALSARDISSGMLRPSTAGYNLNAQAQDATVALIKKVYASGVNVTEIYVDTIGHPA 190
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR---------------- 117
YQAKL + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 191 TYQAKLERVFPGVKITVAKKADSLYPCVSAASVCAKVTRDAALEVLWEAAKGRGRTPKGE 250
Query: 118 -----GWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 172
G E+ E+ +GSGYP D +WL + H ++G+ RFSWGT K
Sbjct: 251 DEMDVGEKRGESEESEGMAWGSGYPSDARCVSWLKANMHPVWGWGPECRFSWGTA----K 306
Query: 173 DIVEV 177
D++E
Sbjct: 307 DMLEA 311
>gi|295658160|ref|XP_002789642.1| ribonuclease H2 subunit A [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283127|gb|EEH38693.1| ribonuclease H2 subunit A [Paracoccidioides sp. 'lutzii' Pb01]
Length = 343
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 18/186 (9%)
Query: 16 GWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
GW V ++ R++S ML NLN + D+ I LI ++ +G+ + EVY+DT+G+
Sbjct: 125 GWGVKVLSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVYIDTIGNP 184
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----------RGWIFE 122
E YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L RG + +
Sbjct: 185 ETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALVKQRGAMEQ 244
Query: 123 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVLWE 180
E A + +GSGYP D + WL + +FG+ + RFSWGT K ++V W
Sbjct: 245 EGAAD---GWGSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTARELLESKRGIKVDWP 301
Query: 181 SDEMDE 186
DE +E
Sbjct: 302 VDEDNE 307
>gi|367000307|ref|XP_003684889.1| hypothetical protein TPHA_0C03020 [Tetrapisispora phaffii CBS 4417]
gi|357523186|emb|CCE62455.1| hypothetical protein TPHA_0C03020 [Tetrapisispora phaffii CBS 4417]
Length = 308
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 104/159 (65%), Gaps = 11/159 (6%)
Query: 16 GWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S+ ML +KN NLNE +HD + LI V+ G++L VY+DTVG
Sbjct: 109 GYATTAITPVDISSGMLRFPPSKN-YNLNEQAHDVTMALIEGVVQRGVVLDHVYVDTVGP 167
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL +RFPSIKF V+KKADSLY VVS AS+VAKV+RD + E+ +
Sbjct: 168 PNSYQKKLEERFPSIKFTVAKKADSLYCVVSVASVVAKVSRDI-----LIEKLKRSSDEK 222
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTS 169
GSGYP DP T AWL D++ +FG+P S+VRFSW TC +
Sbjct: 223 TGSGYPSDPNTVAWLRDNQRPLFGWPNSMVRFSWQTCKT 261
>gi|242807713|ref|XP_002485012.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
gi|218715637|gb|EED15059.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
Length = 386
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 108/198 (54%), Gaps = 30/198 (15%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLNIG-ILLTEVYLDTVGDA 72
GWAV ++ R++SA M+ NLN + D+ + +I VLN I +TE+Y+DT+G+
Sbjct: 153 GWAVKLLSARDISAGMMRPGMGIYNLNAQAMDATVEIIRGVLNDKHINVTEIYIDTIGNP 212
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW---IFEETAE--- 126
YQAKL + FP++ V+KKADSLYP VS AS+VAKVTRD L ++E ++
Sbjct: 213 ATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRDVALESCYRAFYQEPSQKTV 272
Query: 127 ----NMHRN---------------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
NM + +GSGYP D + WL + +FG+ + RFSWGT
Sbjct: 273 DGDTNMMESSETIPPSVSKVEELGWGSGYPSDSKCVNWLRQNMDSVFGWGNECRFSWGTA 332
Query: 168 TSHF--KDIVEVLWESDE 183
KD V V W +DE
Sbjct: 333 KEMLDGKDAVRVDWPADE 350
>gi|452846013|gb|EME47946.1| hypothetical protein DOTSEDRAFT_167397 [Dothistroma septosporum
NZE10]
Length = 332
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 114/207 (55%), Gaps = 13/207 (6%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA + R++S+ M+ + + NLNE + D+ I LI VLN G+ + EVY+DT+G E
Sbjct: 123 GWAARHMSARDISSAMMRPHGMYNLNEQAMDATIDLIQEVLNSGVNIREVYIDTIGRPET 182
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----RGWIFEETAENMHR 130
YQ KL + FP++ V+KKADSLYP VS AS+ AKVTRD L + EE + +
Sbjct: 183 YQRKLERIFPALSITVAKKADSLYPCVSAASVCAKVTRDAALDVLYTSYATEEDSGEV-- 240
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
+GSGYP D WL + + ++G+ + RFSWGT K+++E + D
Sbjct: 241 AWGSGYPSDVRCSNWLKANMNPMYGWGNECRFSWGTA----KEMLEA--KGAPCRVDWPE 294
Query: 191 RRSGKRQLKLSDIGFSSSKRRSEEIES 217
G LKL+ + R +E+ +
Sbjct: 295 PDDGTDNLKLTGFLMGAGDEREDELTT 321
>gi|452986900|gb|EME86656.1| hypothetical protein MYCFIDRAFT_30484 [Pseudocercospora fijiensis
CIRAD86]
Length = 336
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 3/154 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA + +++S+ ML + + NLN + D+ I LI +VL+ G+ + EVY+DT+G E
Sbjct: 126 GWATRSLSAKDISSAMLRPHGVYNLNNQAMDATIDLIQQVLDSGVNIREVYIDTIGKPEV 185
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRNF 132
YQ KL + FP++ V+KKADSLYP VS AS+ AKVTRD L F +
Sbjct: 186 YQKKLEKIFPALNITVAKKADSLYPCVSAASVCAKVTRDAALEVLYTAFAGDGATTEMEW 245
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GSGYP D WL + +FG+ + RFSWGT
Sbjct: 246 GSGYPSDARCSNWLKANMDPVFGWGNECRFSWGT 279
>gi|256274456|gb|EEU09358.1| Rnh201p [Saccharomyces cerevisiae JAY291]
Length = 307
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 115/205 (56%), Gaps = 14/205 (6%)
Query: 15 FGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S +K NLNE +HD + LI V+ + L+ VY+DTVG
Sbjct: 100 IGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKLSHVYVDTVGP 159
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E +
Sbjct: 160 PASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRDPDEI 214
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVLWESDEMDE 186
GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D + + WE MD
Sbjct: 215 LGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKNSIPIKWEEQYMDS 274
Query: 187 DVSSRRSGKRQLKLSDIGFSSSKRR 211
++ + K QL+L + ++R
Sbjct: 275 RKNAAQKTK-QLQLQMVAKPVRRKR 298
>gi|365758681|gb|EHN00512.1| Rnh201p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 307
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 119/214 (55%), Gaps = 20/214 (9%)
Query: 15 FGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S +K NLNE +HD + LI V + L VY+DTVG
Sbjct: 100 IGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVTKQNVKLDHVYVDTVGP 159
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL QRFP IKF V+KKADSLY +VS AS+VAKVTRD + E +
Sbjct: 160 PMSYQKKLEQRFPDIKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRDPDEV 214
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVLWESDEMDE 186
GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D V + WE MD
Sbjct: 215 IGSGYPSDPKTVAWLKRNQTGLMGWPTDMVRFSWQTCQTLLDDPTRHSVIIKWEEQYMD- 273
Query: 187 DVSSRRSG---KRQLKLSDIGFSSSKRRSEEIES 217
SR++ RQL+L + S+ ++R +++
Sbjct: 274 ---SRKNAAQKTRQLQLQMVAKSARRKRLRTLDN 304
>gi|6324257|ref|NP_014327.1| Rnh201p [Saccharomyces cerevisiae S288c]
gi|1730743|sp|P53942.1|RNH2A_YEAST RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=RNase H(201); AltName: Full=RNase H(35);
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|791114|emb|CAA60188.1| unknown [Saccharomyces cerevisiae]
gi|1301957|emb|CAA95946.1| unnamed protein product [Saccharomyces cerevisiae]
gi|190409061|gb|EDV12326.1| ribonuclease HI 35 large subunit [Saccharomyces cerevisiae RM11-1a]
gi|207341690|gb|EDZ69676.1| YNL072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285814579|tpg|DAA10473.1| TPA: Rnh201p [Saccharomyces cerevisiae S288c]
gi|323331967|gb|EGA73379.1| Rnh201p [Saccharomyces cerevisiae AWRI796]
gi|323352575|gb|EGA85074.1| Rnh201p [Saccharomyces cerevisiae VL3]
gi|392296919|gb|EIW08020.1| Rnh201p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 307
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 115/205 (56%), Gaps = 14/205 (6%)
Query: 15 FGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S +K NLNE +HD + LI V+ + L+ VY+DTVG
Sbjct: 100 IGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKLSHVYVDTVGP 159
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E +
Sbjct: 160 PASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRDPDEI 214
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVLWESDEMDE 186
GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D + + WE MD
Sbjct: 215 LGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKNSIPIKWEEQYMDS 274
Query: 187 DVSSRRSGKRQLKLSDIGFSSSKRR 211
++ + K QL+L + ++R
Sbjct: 275 RKNAAQKTK-QLQLQMVAKPVRRKR 298
>gi|367012081|ref|XP_003680541.1| hypothetical protein TDEL_0C04410 [Torulaspora delbrueckii]
gi|359748200|emb|CCE91330.1| hypothetical protein TDEL_0C04410 [Torulaspora delbrueckii]
Length = 299
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 98/158 (62%), Gaps = 9/158 (5%)
Query: 16 GWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
G+A I P ++S M NLNE +HD + LI VL+ G+ L VY+DTVG
Sbjct: 99 GYATTCITPVDISGGMFRFPPSKNYNLNEQAHDVTMKLIQGVLDRGVKLDHVYVDTVGQP 158
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
YQ KL QRFPS+KF V+KKADSLY VVS AS+VAKVTRD I + + N
Sbjct: 159 ASYQKKLEQRFPSVKFTVAKKADSLYCVVSVASVVAKVTRD-----IIVDLSRRNPEEII 213
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTS 169
GSGYP DP+T AWL ++ +FG+P +VRFSW TC +
Sbjct: 214 GSGYPSDPKTTAWLRSNQSPLFGWPHEMVRFSWQTCQT 251
>gi|389624103|ref|XP_003709705.1| ribonuclease H2 subunit A [Magnaporthe oryzae 70-15]
gi|351649234|gb|EHA57093.1| ribonuclease H2 subunit A [Magnaporthe oryzae 70-15]
gi|440466622|gb|ELQ35881.1| ribonuclease H2 subunit A [Magnaporthe oryzae Y34]
gi|440489318|gb|ELQ68978.1| ribonuclease H2 subunit A [Magnaporthe oryzae P131]
Length = 355
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 97/172 (56%), Gaps = 15/172 (8%)
Query: 16 GWAVDIIDPRELSAKML---NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
GWA+ + R++ A M+ NLN + D+ + LI V++ G+ + E+Y+DTVG
Sbjct: 129 GWAISSLSARDIGAGMMRPATSAAYNLNAQALDATVSLIQGVMDRGVNVAEIYVDTVGPP 188
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW---IFEETA---- 125
YQ KL + FP+ K VSKKADSLYP VS AS+ AKVTRD L + E A
Sbjct: 189 AAYQKKLERFFPTAKVTVSKKADSLYPCVSAASVCAKVTRDAALEVLYKNVLSEIAKAEG 248
Query: 126 -ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
E+ +GSGYP D WL + H +FG+ + RFSWGT KD++E
Sbjct: 249 GEDEEIGWGSGYPSDARCVGWLKRNMHPVFGWGTECRFSWGT----VKDMLE 296
>gi|410083421|ref|XP_003959288.1| hypothetical protein KAFR_0J00850 [Kazachstania africana CBS 2517]
gi|372465879|emb|CCF60153.1| hypothetical protein KAFR_0J00850 [Kazachstania africana CBS 2517]
Length = 312
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 106/187 (56%), Gaps = 18/187 (9%)
Query: 13 NPFGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
N G+A I P ++S M NLNE +HD + LI V+N G+ + VY+DTV
Sbjct: 96 NDVGYATTCISPCDISNGMFRFPPSKNYNLNEQAHDVTMDLIQGVINQGVTIEHVYVDTV 155
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G YQ KL RFP IKF V+KKADSLY VVS AS+VAKVTRD + + E++ N+
Sbjct: 156 GPPNTYQKKLETRFPGIKFTVAKKADSLYCVVSVASVVAKVTRDLLVEA-LEEDSTINIR 214
Query: 130 RN-------FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDI------V 175
+ GSGYP DP TK WL + +FG+P +VRFSW TC + D V
Sbjct: 215 DHTTGEQCPVGSGYPSDPRTKVWLRQQQTPLFGWPLEMVRFSWQTCQTLLDDNAKTGKGV 274
Query: 176 EVLWESD 182
E+ WE D
Sbjct: 275 EIQWEED 281
>gi|322699282|gb|EFY91045.1| Ribonuclease H2 subunit A [Metarhizium acridum CQMa 102]
Length = 337
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 109/210 (51%), Gaps = 18/210 (8%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA + R++SA ML + NLN + D+ + LI L G+ + EVY+DTVG
Sbjct: 123 GWATAALSARDISAGMLRPAGVYNLNAQAVDATVALIRGALKRGLNIREVYVDTVGQPAA 182
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI---------FEETA 125
+QA+L + FP+ K V+KKADSLYP VS AS+ AKVTRD L E A
Sbjct: 183 HQARLQRVFPTTKITVAKKADSLYPCVSAASVCAKVTRDAALEALYGARRDGDGDGEGAA 242
Query: 126 ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMD 185
M +GSGYP D WL + H +FG+ RFSWGT KD++E ++D
Sbjct: 243 AGM--EWGSGYPSDARCVGWLRRNMHPVFGWGPECRFSWGTA----KDMLETKGGGVKVD 296
Query: 186 EDVSSRRSGKRQLKLSDIGFSSSKRRSEEI 215
V G ++++D + ++E+
Sbjct: 297 WPV--EEEGGDSMRVTDFFVAGRGEETDEL 324
>gi|167524000|ref|XP_001746336.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775098|gb|EDQ88723.1| predicted protein [Monosiga brevicollis MX1]
Length = 596
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 96/187 (51%), Gaps = 36/187 (19%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE----------- 63
GW V ++ ++SA ML++ K NLN +H+S + L+ R+ G+ + E
Sbjct: 361 MGWKVHMLAASDISAGMLSRTKHNLNAQAHESTVDLVKRLHAQGVQIKEDLTYRLRLNHR 420
Query: 64 -VYLDTVGDAEKYQAKLSQ----RFPSIKFVVSKK-------------------ADSLYP 99
+Y+DTVG A YQ +L P+IK VV K AD YP
Sbjct: 421 QLYVDTVGKAHIYQQQLENWLRPTIPNIKIVVESKLCVTHRVSDLCVLILDIANADVTYP 480
Query: 100 VVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSL 159
+VS ASI AKVTRD L W E E + +FG GYPGD TKAWL IFGFPSL
Sbjct: 481 IVSAASICAKVTRDAVLTYWRHPEQRE-IDNDFGCGYPGDSSTKAWLRKVLDPIFGFPSL 539
Query: 160 VRFSWGT 166
VRFSW T
Sbjct: 540 VRFSWST 546
>gi|224001680|ref|XP_002290512.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973934|gb|EED92264.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 249
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
S+ G+ + ++ E+S ML NLN +SHD+A+ +I VL+ G+ + Y+DTVG
Sbjct: 55 SDSIGFVLRVLHASEISRNMLRSEPYNLNAMSHDAAMEMIWAVLDSGVKIETAYIDTVGM 114
Query: 72 AEKYQAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
+ Y++KL + F +I+F+V KKAD+ Y S AS+VAK +RD + W + ET+
Sbjct: 115 PDAYRSKLERVFQGHNIEFIVEKKADAKYAPCSAASVVAKESRDTLIANWKWTETSYEPK 174
Query: 130 --RNFGSGYPGDPETKAWLTDHKHI--IFGFPSLVRFSWG 165
RNFGSGYP DP+ W+ ++ ++ FG+P VRFSWG
Sbjct: 175 DGRNFGSGYPSDPKCTTWMENNLNVDAPFGYPDFVRFSWG 214
>gi|358396936|gb|EHK46311.1| hypothetical protein TRIATDRAFT_6664, partial [Trichoderma
atroviride IMI 206040]
Length = 334
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 98/190 (51%), Gaps = 23/190 (12%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA + R++ A ML NLN + D+ + LI V G+ + E+Y+DT+G Y
Sbjct: 116 GWATTALSARDIGANMLRPVPYNLNAQAMDATMDLIRAVYAKGVNIKEIYVDTIGPPASY 175
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF------------EE 123
QAKL + FP+ K V+KKADSLY VS AS+ AKV+RD L E
Sbjct: 176 QAKLQRVFPTAKVTVAKKADSLYACVSAASVCAKVSRDAALEKLFHARQVATAVANGEEV 235
Query: 124 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE------- 176
E +GSGYP D +T WL ++ H +FG+ RFSW T KD++E
Sbjct: 236 PVEEGTMEWGSGYPSDSKTSTWLRNNMHPLFGWGPECRFSWSTA----KDLLEGKGNGVK 291
Query: 177 VLWESDEMDE 186
V W +DE E
Sbjct: 292 VEWPADEDGE 301
>gi|119196321|ref|XP_001248764.1| hypothetical protein CIMG_02535 [Coccidioides immitis RS]
gi|392862022|gb|EAS37377.2| ribonuclease HII [Coccidioides immitis RS]
Length = 353
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 103/174 (59%), Gaps = 17/174 (9%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 72
GWA+ ++ R++S+ M NLN + D+ + +I V+ G+ + EVY+DT+G+
Sbjct: 137 GWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVKEVYIDTIGNP 196
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA------- 125
+ YQ KL + FPS+K V+KKAD+L+P VS AS+ AKVTRD L +EE
Sbjct: 197 QTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALE-ICYEELQRQRAGMV 255
Query: 126 --ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 177
E+M+ +GSGYP D + WL H +FG+ + RFSWGT KD++EV
Sbjct: 256 EMEHMNNGWGSGYPSDSKCVTWLKKEMHPLFGWGNECRFSWGTA----KDLLEV 305
>gi|226287752|gb|EEH43265.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb18]
Length = 343
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 109/191 (57%), Gaps = 21/191 (10%)
Query: 16 GWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
GW V ++ R++S ML NLN + D+ I LI ++ +G+ + EVY+DTVG+
Sbjct: 125 GWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVYIDTVGNP 184
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----------RGWIFE 122
E YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L RG + +
Sbjct: 185 ETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALVKQRGAMEQ 244
Query: 123 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI--VEVLWE 180
E A + +GSGYP D + WL + +FG+ + RFSWGT + ++V W
Sbjct: 245 EGAAD---GWGSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTARELLESNRGIKVDW- 300
Query: 181 SDEMDEDVSSR 191
+DEDV ++
Sbjct: 301 --PVDEDVEAQ 309
>gi|407042272|gb|EKE41240.1| ribonuclease HII protein [Entamoeba nuttalli P19]
Length = 270
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 105/199 (52%), Gaps = 20/199 (10%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEK 74
G++ I+ P +S M K++LNEI+ + +I +++ + +Y DTVG ++K
Sbjct: 74 GFSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKK 133
Query: 75 YQAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-R 130
YQA ++ F +K V KAD LYPVVS ASI AKVTRD L WI+EET N+ R
Sbjct: 134 YQAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNWIYEET--NIQTR 191
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
G GYP D +T W+ +FG+P+LVRF W T K I+E E V
Sbjct: 192 QVGCGYPSDVDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE---------EKVPM 238
Query: 191 RRSGKRQLKLSDIGFSSSK 209
+R Q K +G SK
Sbjct: 239 KRPFPYQNKQDVVGIIQSK 257
>gi|365987942|ref|XP_003670802.1| hypothetical protein NDAI_0F02410 [Naumovozyma dairenensis CBS 421]
gi|343769573|emb|CCD25559.1| hypothetical protein NDAI_0F02410 [Naumovozyma dairenensis CBS 421]
Length = 299
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 110/177 (62%), Gaps = 13/177 (7%)
Query: 15 FGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S+ ML + NLNE +HD + LI VLN+G+ L+ VY+DTVG
Sbjct: 120 IGYATTSITPLDISSGMLKYPPEKVYNLNEQAHDVTMALIQGVLNLGVNLSHVYVDTVGP 179
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
++ YQ KL RFPS++F V+KKADSL+ VVS AS+VAKVTRD + E E +
Sbjct: 180 SQTYQKKLQDRFPSVEFTVTKKADSLFCVVSVASVVAKVTRDILVESLKRPEVDEII--- 236
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIVE-----VLWESD 182
GSGYP D +T WL +++ ++FG+P +VRFSW TC + K E + WE D
Sbjct: 237 -GSGYPSDAKTTKWLRENQTLLFGWPKEMVRFSWQTCQTLLKKNDEANGLLIQWEED 292
>gi|396458422|ref|XP_003833824.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans
JN3]
gi|312210372|emb|CBX90459.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans
JN3]
Length = 357
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 99/175 (56%), Gaps = 23/175 (13%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA + +++SA ML+ + NLN + D+ I LI VL G+ +T++Y+DT+G E Y
Sbjct: 127 GWATRSLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLEKGVNVTDIYIDTIGKPEIY 186
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR-GW--------------- 119
Q KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD L G+
Sbjct: 187 QKKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALEVGYGKYHDHDHSHSQSSS 246
Query: 120 --IFEETAENMHR-----NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+ + ++GSGYP DP T+AWL + +FG+ + R SWGT
Sbjct: 247 TDVLNAQTQTQDPVKATVSWGSGYPSDPRTQAWLKQNMDPVFGWGTECRHSWGTA 301
>gi|183232283|ref|XP_655093.2| RNase HI large subunit [Entamoeba histolytica HM-1:IMSS]
gi|169802113|gb|EAL49706.2| RNase HI large subunit, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708100|gb|EMD47623.1| rnase HI large subunit, putative [Entamoeba histolytica KU27]
Length = 270
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 105/199 (52%), Gaps = 20/199 (10%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEK 74
G++ I+ P +S M K++LNEI+ + +I +++ + +Y DTVG ++K
Sbjct: 74 GFSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKK 133
Query: 75 YQAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-R 130
YQA ++ F +K V KAD LYPVVS ASI AKVTRD L WI+EET N+ R
Sbjct: 134 YQAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNWIYEET--NIQTR 191
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
G GYP D +T W+ +FG+P+LVRF W T K I+E E V
Sbjct: 192 QVGCGYPSDVDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE---------EKVPM 238
Query: 191 RRSGKRQLKLSDIGFSSSK 209
+R Q K +G SK
Sbjct: 239 KRPFPYQNKQDVVGIIQSK 257
>gi|225555530|gb|EEH03822.1| ribonuclease HI large subunit [Ajellomyces capsulatus G186AR]
Length = 341
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 103/187 (55%), Gaps = 12/187 (6%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLTEVYLDT 68
S+ GW V ++ R+++A ML NLN + D+ LI ++ GI + EVY+DT
Sbjct: 120 SSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEVYIDT 179
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD-------RTLRGWIF 121
+G+ E YQ KL Q FPS+K V+KKADSLYP VS AS+ AKVTRD R++
Sbjct: 180 IGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMMEHCN 239
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVLW 179
E+ +GSGYP D + WL + +FG+ RFSWGT K ++V W
Sbjct: 240 AMEPESSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGHECRFSWGTARELLESKTSIKVDW 299
Query: 180 ESDEMDE 186
+E DE
Sbjct: 300 PVEEDDE 306
>gi|440299535|gb|ELP92087.1| ribonuclease H2 subunit A, putative [Entamoeba invadens IP1]
Length = 274
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 98/160 (61%), Gaps = 7/160 (4%)
Query: 12 SNPF-GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTV 69
++PF G++ +++ P +++ KM KI+LNE++ + +I+R+LNI + V++DTV
Sbjct: 74 NSPFCGYSSEVLTPSDINKKMCQPLKISLNEVAFSAVRTIISRILNITQRGVKGVFVDTV 133
Query: 70 GDAEKYQAKLSQRFPSIK---FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 126
G KY+A ++ FP I V KAD+ YPVVSGASIVAKVTRD L WIF+ET
Sbjct: 134 GPPAKYKAMIAHSFPQIDPECITVCSKADAKYPVVSGASIVAKVTRDVCLERWIFKETHT 193
Query: 127 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
F GYP D T W+ + +FG+P+ VRF W T
Sbjct: 194 EGFSGF--GYPTDLVTINWMKESYDPVFGYPNFVRFGWET 231
>gi|164655636|ref|XP_001728947.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
gi|159102835|gb|EDP41733.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
Length = 269
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 26/173 (15%)
Query: 31 MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFP---SIK 87
ML + NLN+ S D+ + LI VLN G+ +T++++DTVG+ Y AKL Q FP I+
Sbjct: 1 MLRRIPHNLNQQSCDATVHLIQGVLNSGVDVTKIFVDTVGEPNAYAAKLKQYFPRHSHIE 60
Query: 88 FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR----------------- 130
++V++KAD+ YP+V ASI AKVTRD + W++ E +++H
Sbjct: 61 WIVARKADATYPIVGAASIAAKVTRDACVDHWMYAEPLQSVHHPEISKSSGKRKRGNNDD 120
Query: 131 ------NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 177
GSGYPGDP+T +L + +FG+ LVRFSW T S ++ V V
Sbjct: 121 EETDIWATGSGYPGDPKTVRYLKETLDPVFGWARLVRFSWATAKSMLEEPVHV 173
>gi|303322466|ref|XP_003071226.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110925|gb|EER29081.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320040565|gb|EFW22498.1| ribonuclease HI large subunit [Coccidioides posadasii str.
Silveira]
Length = 353
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 103/174 (59%), Gaps = 17/174 (9%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 72
GWA+ ++ R++S+ M NLN + D+ + +I V+ G+ + EVY+DT+G+
Sbjct: 137 GWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVKEVYIDTIGNP 196
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA------- 125
+ YQ KL + FPS+K V+KKAD+L+P VS AS+ AKVTRD L +EE
Sbjct: 197 QTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALE-ICYEELQKQRAGMV 255
Query: 126 --ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 177
E+M+ +GSGYP D + WL H +FG+ + RFSWGT KD++EV
Sbjct: 256 EMEHMNDGWGSGYPSDSKCVTWLKKEMHPLFGWGNECRFSWGTA----KDLLEV 305
>gi|154288434|ref|XP_001545012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408653|gb|EDN04194.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 341
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 102/187 (54%), Gaps = 12/187 (6%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLTEVYLDT 68
S+ GW V ++ R+++A ML NLN + D+ LI ++ GI + EVY+DT
Sbjct: 120 SSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEVYIDT 179
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD-------RTLRGWIF 121
+G+ E YQ KL Q FPS+K V+KKADSLYP VS AS+ AKVTRD R++
Sbjct: 180 IGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMMKHCN 239
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVLW 179
E +GSGYP D + WL + +FG+ RFSWGT K ++V W
Sbjct: 240 AMEPERSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGLECRFSWGTARELLESKTSIKVDW 299
Query: 180 ESDEMDE 186
+E DE
Sbjct: 300 PVEEDDE 306
>gi|240273728|gb|EER37247.1| ribonuclease HI large subunit [Ajellomyces capsulatus H143]
gi|325094841|gb|EGC48151.1| ribonuclease HI large subunit [Ajellomyces capsulatus H88]
Length = 341
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 103/187 (55%), Gaps = 12/187 (6%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLTEVYLDT 68
S+ GW V ++ R+++A ML NLN + D+ LI ++ GI + EVY+DT
Sbjct: 120 SSSCGWGVKVMSARDIAAGMLQPGTRNYNLNAQAMDATTELIRCIVQERGINVKEVYIDT 179
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD-------RTLRGWIF 121
+G+ E YQ KL Q FPS++ V+KKADSLYP VS AS+ AKVTRD R++
Sbjct: 180 IGNPEAYQRKLEQIFPSLQITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMMEHCN 239
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVLW 179
E+ +GSGYP D + WL + +FG+ RFSWGT K ++V W
Sbjct: 240 AMEPESSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGHECRFSWGTARELLESKTSIKVDW 299
Query: 180 ESDEMDE 186
+E DE
Sbjct: 300 PVEEDDE 306
>gi|116200221|ref|XP_001225922.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
gi|88179545|gb|EAQ87013.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
Length = 344
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 103/194 (53%), Gaps = 24/194 (12%)
Query: 16 GWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
GWAVD + R++ A ML NLN + D+ + LI V G+ + E+Y+DT+G
Sbjct: 128 GWAVDALSARDIGAGMLRPGLGAYNLNAQAMDATVELIKGVYARGVNVREIYVDTIGQPA 187
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG-W----IFEETAENM 128
YQAKL++ FP+ K V+KKADSLYP VS AS+ AKVTRD L W E
Sbjct: 188 AYQAKLARVFPAAKVTVAKKADSLYPSVSAASVCAKVTRDVALETLWKARGGGGEEGVEE 247
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE----------VL 178
+GSGYP D WL + H ++G+ RFSWGT KD++E V
Sbjct: 248 TMAWGSGYPSDGRCVTWLKSNMHPVWGWGPECRFSWGTA----KDMIEATPAKGGGVNVE 303
Query: 179 WESDEMDEDVSSRR 192
W +DED ++R
Sbjct: 304 W---PVDEDADTQR 314
>gi|344234362|gb|EGV66232.1| ribonuclease HII [Candida tenuis ATCC 10573]
gi|344234363|gb|EGV66233.1| hypothetical protein CANTEDRAFT_112777 [Candida tenuis ATCC 10573]
Length = 337
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 106/177 (59%), Gaps = 12/177 (6%)
Query: 15 FGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
G+ I+ +++S+ ML ++ NLNE +HD+ I LI ++ + + VY+DTVG
Sbjct: 145 IGYLSSILSAKDISSGMLRVHQGNYNLNEQAHDATINLIKALVEKKVNIKRVYVDTVGPP 204
Query: 73 EKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
EKYQAKLS F S IKF V+KKADSLYP+VS ASI+AKVTRD L + + + R
Sbjct: 205 EKYQAKLSNIFSSYNIKFTVTKKADSLYPIVSCASIIAKVTRDLYLH---YYNQKDPLLR 261
Query: 131 N--FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEVLWESD 182
GSGYP DP T WL + + +FG+ ++R+SW T VEV +E++
Sbjct: 262 GTEMGSGYPSDPRTSRWLKEQINPVFGWHFGVLRYSWQTAKDSLDKNKAVEVDYEAE 318
>gi|310794509|gb|EFQ29970.1| ribonuclease HII [Glomerella graminicola M1.001]
Length = 344
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 95/165 (57%), Gaps = 8/165 (4%)
Query: 16 GWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+A+ + R++S+ M+ NLN + D+ + LI V G+ + E+Y+DTVG
Sbjct: 135 GFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNIQEIYVDTVGQPAA 194
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN--- 131
YQAKL + FP+ K V+KKADSLYP VS AS+ AKVTRD L E++
Sbjct: 195 YQAKLQRFFPATKITVAKKADSLYPCVSAASVCAKVTRDAALEVLYKARAPESVVEEGMA 254
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
+GSGYP D +W+ + H +FG+ RFSWGT KD++E
Sbjct: 255 WGSGYPSDGRCVSWMKSNMHPVFGWGPECRFSWGTA----KDMLE 295
>gi|398406781|ref|XP_003854856.1| hypothetical protein MYCGRDRAFT_68089 [Zymoseptoria tritici IPO323]
gi|339474740|gb|EGP89832.1| hypothetical protein MYCGRDRAFT_68089 [Zymoseptoria tritici IPO323]
Length = 331
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 91/154 (59%), Gaps = 3/154 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA ++ +++S+ M+ N NLN + D+ I LI VL+ G+ + EVY+DT+G
Sbjct: 122 GWATRLMSAQDISSAMMRPNGTYNLNAQAMDATIDLIQEVLDSGVNIREVYIDTIGQPAA 181
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRNF 132
YQ KL + FP++ V+KKADSLYP VS AS+ AKVTRD L + ++ +
Sbjct: 182 YQKKLERIFPALDITVAKKADSLYPCVSAASVCAKVTRDAALDVLYSSYASADDDGLIAW 241
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GSGYP D WL + +FG+ + RFSWGT
Sbjct: 242 GSGYPSDARCSNWLKSNMDPLFGWGNECRFSWGT 275
>gi|401840962|gb|EJT43568.1| RNH201-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 307
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 118/214 (55%), Gaps = 20/214 (9%)
Query: 15 FGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S +K NLNE +HD + LI V + L VY+DTVG
Sbjct: 100 IGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVTKQNVKLDHVYVDTVGP 159
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL QRFP IKF V+KKADSLY +VS AS+VAKVTRD + E +
Sbjct: 160 PTSYQKKLEQRFPDIKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRDPDEV 214
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVLWESDEMDE 186
GSGYP DP+T AWL ++ + G+ + +VRFSW TC + D V + WE MD
Sbjct: 215 IGSGYPSDPKTVAWLKRNQTSLMGWTTDMVRFSWQTCQTLLDDPTRHSVIIKWEEQYMD- 273
Query: 187 DVSSRRSG---KRQLKLSDIGFSSSKRRSEEIES 217
SR++ RQL+L + S+ ++R +++
Sbjct: 274 ---SRKNAAQKTRQLQLQMVAKSARRKRLRTLDN 304
>gi|302308334|ref|NP_985219.2| AER363Wp [Ashbya gossypii ATCC 10895]
gi|299789405|gb|AAS53043.2| AER363Wp [Ashbya gossypii ATCC 10895]
gi|374108444|gb|AEY97351.1| FAER363Wp [Ashbya gossypii FDAG1]
Length = 304
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 105/176 (59%), Gaps = 11/176 (6%)
Query: 15 FGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A + P +S+ ML NLNE +HD+ I LI VL+ G+ + VY+DTVG
Sbjct: 99 IGFATTGLSPAAISSGMLRYPPTKNYNLNEQAHDTTIALIQGVLDAGVRVEHVYVDTVGP 158
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQAKL QRFP+ K V+KKADS +PVVS AS+VAKVTRD L T +++
Sbjct: 159 PLAYQAKLQQRFPACKITVAKKADSTFPVVSVASVVAKVTRDVWLHA--LRPTPDDV--- 213
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTCTSHFKD--IVEVLWESDEM 184
GSGYPGD +T AWL +FG+ P LVRFSW TC + + + + WE D +
Sbjct: 214 LGSGYPGDQKTVAWLHRECRPLFGWSPELVRFSWQTCRTLLESDKAIRIEWEEDSL 269
>gi|290991286|ref|XP_002678266.1| predicted protein [Naegleria gruberi]
gi|284091878|gb|EFC45522.1| predicted protein [Naegleria gruberi]
Length = 245
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 94/168 (55%), Gaps = 14/168 (8%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI----GILLTEVYLDTVGDAEKYQ 76
I+ E+S KML++ K NLN ISHD AI LI G L EVY+DTVGD +KYQ
Sbjct: 83 IVQSDEISHKMLSRKKYNLNLISHDCAIHLIKTASETLSKKGKYLKEVYIDTVGDPKKYQ 142
Query: 77 AKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF--G 133
AKL ++FP I+ VV KKADS YPVV GASIVAKV RD I EE + G
Sbjct: 143 AKLQEKFPEIESIVVDKKADSKYPVVGGASIVAKVKRDE-----IVEEIQSLKYSKLKMG 197
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSL-VRFSWGTCTSHFKD-IVEVLW 179
SGY D TK +L +FG+ VRFSW T D V V W
Sbjct: 198 SGYTSDKYTKDFLNKALDKVFGYHHTDVRFSWSTIKKILDDSAVSVEW 245
>gi|367054002|ref|XP_003657379.1| hypothetical protein THITE_2122999 [Thielavia terrestris NRRL 8126]
gi|347004645|gb|AEO71043.1| hypothetical protein THITE_2122999 [Thielavia terrestris NRRL 8126]
Length = 366
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 99/203 (48%), Gaps = 35/203 (17%)
Query: 16 GWAVDIIDPRELSAKMLNKNK-------INLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
GWAV + R++ A ML NLN + D+ + L+ V G+ + E+Y+DT
Sbjct: 128 GWAVTALSARDIGAGMLRPGGGAAGGAAYNLNAQAMDATVALVRAVYARGVNVREIYVDT 187
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD-----------RTLR 117
+G YQA+L + FP+ K V+KKADSLYP VS AS+ AKVTRD R +
Sbjct: 188 IGPPAAYQARLERVFPTAKITVAKKADSLYPCVSAASVCAKVTRDAALETLWKARGRAVN 247
Query: 118 GWIFEETAENMHRN-----------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
G + AE + +GSGYP D +WL H H +FG+ RFSWGT
Sbjct: 248 GAGVDVGAEGQEQEDKEADDDKGMAWGSGYPSDGRCVSWLKGHMHPVFGWGPECRFSWGT 307
Query: 167 CTSHFKDI------VEVLWESDE 183
+ V+V W DE
Sbjct: 308 AKDMLEAAPAKGGGVKVEWPVDE 330
>gi|315044861|ref|XP_003171806.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
gi|311344149|gb|EFR03352.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
Length = 362
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 105/195 (53%), Gaps = 24/195 (12%)
Query: 13 NPFGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNI-GILLTEVYLDT 68
N GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI + EVY+DT
Sbjct: 132 NSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKEVYVDT 191
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG----WIFEE- 123
+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L W+ +
Sbjct: 192 IGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESWVNQRK 251
Query: 124 -------------TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS- 169
TAE ++GSGYP D + WL + +FG+ RFSWGT
Sbjct: 252 RKRSLESGGGEAVTAEEETLSWGSGYPSDGKCIGWLKKDMNPLFGWGIECRFSWGTSKEL 311
Query: 170 -HFKDIVEVLWESDE 183
K V+V W +E
Sbjct: 312 LEIKSGVKVDWPVEE 326
>gi|380488296|emb|CCF37475.1| ribonuclease HII [Colletotrichum higginsianum]
Length = 341
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+A+ + R++S+ M+ NLN + D+ + LI V G+ + E+Y+DTVG
Sbjct: 133 GFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNVQEIYVDTVGQPAA 192
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF-- 132
YQAKL + FP+ K V KKADSLYP VS AS+ AKV+RD L E+
Sbjct: 193 YQAKLQRFFPATKITVEKKADSLYPCVSAASVCAKVSRDAALEVLYKARAPESAEEGMAW 252
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GSGYP D +W+ + H +FG+ RFSWGT
Sbjct: 253 GSGYPSDGRCVSWMRSNMHPVFGWGPECRFSWGT 286
>gi|425778544|gb|EKV16668.1| Ribonuclease [Penicillium digitatum Pd1]
Length = 333
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 110/200 (55%), Gaps = 15/200 (7%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
G+AV ++ R++S+ M+ NLN + D+ + +I V+ + G+ + EVY+DT+G+
Sbjct: 120 GYAVKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDVREVYIDTIGNP 179
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI-----FEETAEN 127
YQ KL + FPS+K V+KKADSLYP VS AS+VAKVTRD L E++
Sbjct: 180 ATYQQKLERIFPSLKITVAKKADSLYPCVSAASVVAKVTRDVALEVMYEAVLRAEQSLSP 239
Query: 128 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWESDE-- 183
+ +GSGYP D + WL + +FG+ S RFSWGT K V W +E
Sbjct: 240 TPQTWGSGYPSDSKCVGWLRRNMDTVFGWGSECRFSWGTAKEMLEMKGGARVDWPDEEEG 299
Query: 184 ---MDEDVSSRRSGKRQLKL 200
+DE + S GK K+
Sbjct: 300 APRLDEFLLSSAPGKSTGKV 319
>gi|301100786|ref|XP_002899482.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
gi|262103790|gb|EEY61842.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
Length = 791
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 96/170 (56%), Gaps = 24/170 (14%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW V +I E+S KM + NLNE+S D+AI LI V N G ++ +V++DTVGD
Sbjct: 87 LGWIVRLISAAEISDKM-QRQTSNLNEMSRDAAIQLINEVQNKGAVVKKVFVDTVGDPRW 145
Query: 75 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
YQ+ L++ F +I+F V KKADSL+ VVS ASI AKVTRDR + W++E A + +FG
Sbjct: 146 YQSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRVISDWMWESPALELPTDFG 205
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 183
SGYP DP +WGT + V+V W D+
Sbjct: 206 SGYPSDP----------------------NWGTVEPFNEKAVKVEWPHDK 233
>gi|261192900|ref|XP_002622856.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
gi|239588991|gb|EEQ71634.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
Length = 343
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 111/209 (53%), Gaps = 26/209 (12%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLTEVYLDT 68
S GW V ++ R++SA ML NLN + D+ LI ++ G+ + EVY+DT
Sbjct: 121 STSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREVYIDT 180
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----------RG 118
+G+ E YQ KL + FPS+K V+KKADSLYP VS ASI AKVTRD L R
Sbjct: 181 IGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALEICYEALLKQRD 240
Query: 119 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVE 176
+ +++A +GSGYP D + +WL + +FG+ RFSWGT K V
Sbjct: 241 TVKQDSAT---EGWGSGYPSDSKCVSWLKNDMDTLFGWGYECRFSWGTARELLESKTGVR 297
Query: 177 VLWESDEMDE--------DVSSRRSGKRQ 197
V W +E +E +S+ R+G +
Sbjct: 298 VDWPVEEDEEAQRLTNFFSISATRAGNNE 326
>gi|50291445|ref|XP_448155.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527466|emb|CAG61106.1| unnamed protein product [Candida glabrata]
Length = 307
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 101/175 (57%), Gaps = 13/175 (7%)
Query: 16 GWAVDIIDPRELSAKM---LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
G+A I P ++S M NLNE +HD + LI V++ G+ + VY+DTVG
Sbjct: 106 GYATTAITPYDISTGMSRYPPSRNYNLNEQAHDVTMALIQGVIDRGVSIDHVYVDTVGPP 165
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
YQ KL RFPSIKF V+KKADSLY VVS AS+VAKVTRD + E
Sbjct: 166 ASYQRKLEDRFPSIKFTVAKKADSLYCVVSVASVVAKVTRD-----LLIESLRRTPDEIM 220
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKD----IVEVLWESD 182
GSGYP DP+T AWL ++ + G+P +VRFSW TC + KD V + W+ D
Sbjct: 221 GSGYPSDPKTVAWLKGNQKPLLGWPIEIVRFSWQTCQTLLKDKSTGSVSIKWDED 275
>gi|300175421|emb|CBK20732.2| unnamed protein product [Blastocystis hominis]
Length = 174
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 92/147 (62%), Gaps = 6/147 (4%)
Query: 42 ISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQ--RFPSIKFVVSKKADSLYP 99
+SH++AI +I+ +L + + ++EVY+DTVG A KY+AKL+Q F +IKF V+ KADSLY
Sbjct: 1 MSHNAAISMISELLRMKVRVSEVYIDTVGPAAKYEAKLNQTFNFTNIKFKVAPKADSLYK 60
Query: 100 VVSGASIVAKVTRDRTLRGWIFEETA--ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP 157
VS ASIVAK RD + +EE + + GSGYP DP T +L +FGFP
Sbjct: 61 CVSAASIVAKTHRDAIIEQHPWEEPCMQDRLIGKLGSGYPSDPMTVQFLESVMDPVFGFP 120
Query: 158 SLVRFSWGTCTSHF--KDIVEVLWESD 182
+ +RFSW T + K V+W+++
Sbjct: 121 TFIRFSWSTASRMLQEKQAAPVIWKNE 147
>gi|361126847|gb|EHK98833.1| putative Ribonuclease H2 subunit A [Glarea lozoyensis 74030]
Length = 344
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 11/161 (6%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAV+++ R++ A M+ NLN + D+ I LI V G+ + E+Y+DT+G+
Sbjct: 132 GWAVEVMSARDIGANMMKPAATYNLNAQAMDATINLIHGVYRQGVNVKEIYIDTIGNPAT 191
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE-------- 126
YQ KL + FP+ V+KKADSLYP VS AS+ AKVTRD L ++E E
Sbjct: 192 YQRKLEKIFPTALVTVAKKADSLYPCVSAASVCAKVTRDAALE-VLYESYLEPKDEEDEM 250
Query: 127 -NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
+ +GSGYP D + WL + +FG+ S RFSWGT
Sbjct: 251 EVVEPTWGSGYPSDAKCTTWLKRNMDPVFGWGSECRFSWGT 291
>gi|159130978|gb|EDP56091.1| ribonuclease HI large subunit [Aspergillus fumigatus A1163]
Length = 363
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 98/174 (56%), Gaps = 20/174 (11%)
Query: 11 ASNPF----GWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLN-IGILLTE 63
A NP GWA ++ R++SA M+ NLN + D+ + +I ++ + + E
Sbjct: 136 AGNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIRE 195
Query: 64 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 123
VY+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAKVTRD L E
Sbjct: 196 VYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALE--FCHE 253
Query: 124 TAENMHR-----------NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
+ R ++GSGYP D + +WL +H IFG+ + RFSWGT
Sbjct: 254 AVYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECRFSWGT 307
>gi|440789557|gb|ELR10864.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 243
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 94/171 (54%), Gaps = 6/171 (3%)
Query: 16 GWAVDIIDPRELS-AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+ I+ E+S A + NLNE+S+D+A GL VL GI L E+Y+D +G+
Sbjct: 46 GFRSRIVSAEEISNANYSHTENRNLNEVSYDAATGLNRDVLATGINLAELYVDALGNCAT 105
Query: 75 YQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
Y+A L + FP I VV KAD YP+VS ASIVAK RD + F+E ++RN+G
Sbjct: 106 YRATLQRLFPGICTIVVESKADVNYPIVSVASIVAKTLRDGITKNLPFKECYITINRNYG 165
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD----IVEVLWE 180
+GYP P K WL + +FG S V+F+WG D + V WE
Sbjct: 166 NGYPSTPAVKDWLMRNLDPVFGLLSAVQFNWGPVKKALADPKNGVKRVTWE 216
>gi|70991314|ref|XP_750506.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
gi|66848138|gb|EAL88468.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
Length = 363
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 98/174 (56%), Gaps = 20/174 (11%)
Query: 11 ASNPF----GWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLN-IGILLTE 63
A NP GWA ++ R++SA M+ NLN + D+ + +I ++ + + E
Sbjct: 136 AGNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIRE 195
Query: 64 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 123
VY+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAKVTRD L E
Sbjct: 196 VYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALE--FCHE 253
Query: 124 TAENMHR-----------NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
+ R ++GSGYP D + +WL +H IFG+ + RFSWGT
Sbjct: 254 AVYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECRFSWGT 307
>gi|425774265|gb|EKV12578.1| Ribonuclease [Penicillium digitatum PHI26]
Length = 333
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 111/200 (55%), Gaps = 15/200 (7%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
G+AV ++ R++S+ M+ NLN + D+ + +I V+ + G+ + EVY+DT+G+
Sbjct: 120 GYAVKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDVREVYIDTIGNP 179
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI-----FEETAEN 127
YQ KL + FPS+K V+KKADSLYP VS AS+VAKVTRD L E++
Sbjct: 180 ATYQQKLERIFPSLKITVAKKADSLYPCVSAASVVAKVTRDVALEVMYEAVLRAEQSLSP 239
Query: 128 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV--EVLWESDE-- 183
+ +GSGYP D + WL + +FG+ S RFSWGT + V V W +E
Sbjct: 240 TPQTWGSGYPSDSKCVGWLRRNMDTVFGWGSECRFSWGTAKEMLEMKVGARVDWPDEEEG 299
Query: 184 ---MDEDVSSRRSGKRQLKL 200
+DE + S GK K+
Sbjct: 300 APRLDEFLLSSAPGKSTGKV 319
>gi|145238902|ref|XP_001392098.1| ribonuclease H2 subunit A [Aspergillus niger CBS 513.88]
gi|134076599|emb|CAK45152.1| unnamed protein product [Aspergillus niger]
Length = 352
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 106/182 (58%), Gaps = 14/182 (7%)
Query: 16 GWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
GWAV ++ R++S+ M+ NLN + D+ I LI ++ + + + EVY+DT+G+
Sbjct: 135 GWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGIIEDRNMDVREVYIDTIGNP 194
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---RGWIFEET-AENM 128
YQ KL + FPS++ V+KKADSLYP VS AS+ AKVTRD L I+E+T AE+
Sbjct: 195 ATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDLCHQAIYEDTHAEDS 254
Query: 129 HR-----NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWES 181
R ++GSGYP D + WL + IFG+ + RFSWGT K +V W
Sbjct: 255 PRAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWGTAKELLELKGRPKVDWPG 314
Query: 182 DE 183
+E
Sbjct: 315 EE 316
>gi|167394469|ref|XP_001740978.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
gi|165894666|gb|EDR22579.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
Length = 270
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEK 74
G++ I+ P +S M K++LNEI+ + +I +++ I + +Y DTVG + K
Sbjct: 74 GFSTRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRINQRKIVHIYCDTVGPSGK 133
Query: 75 YQAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-R 130
YQ ++ F IK V KAD LYPVVS ASI AKVTRD L WI+EE N+ R
Sbjct: 134 YQMMIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLDNWIYEE--RNIQTR 191
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
G GYP D +T W+ +FG+P+LVRF W T K I+E E V
Sbjct: 192 KVGCGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE---------EKVPM 238
Query: 191 RRSGKRQLKLSDIGFSSSK 209
+R Q K +G SK
Sbjct: 239 KRPFPYQNKQDVVGVIQSK 257
>gi|350636009|gb|EHA24370.1| hypothetical protein ASPNIDRAFT_209236 [Aspergillus niger ATCC
1015]
Length = 352
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 106/182 (58%), Gaps = 14/182 (7%)
Query: 16 GWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
GWAV ++ R++S+ M+ NLN + D+ I LI ++ + + + EVY+DT+G+
Sbjct: 135 GWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGIIEDRNMDVREVYIDTIGNP 194
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---RGWIFEET-AENM 128
YQ KL + FPS++ V+KKADSLYP VS AS+ AKVTRD L I+E+T AE+
Sbjct: 195 ATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDLCHQAIYEDTHAEDS 254
Query: 129 HR-----NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWES 181
R ++GSGYP D + WL + IFG+ + RFSWGT K +V W
Sbjct: 255 PRAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWGTAKELLELKGRPKVDWPG 314
Query: 182 DE 183
+E
Sbjct: 315 EE 316
>gi|402076046|gb|EJT71469.1| ribonuclease H2 subunit A [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 373
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 93/171 (54%), Gaps = 20/171 (11%)
Query: 16 GWAVDIIDPRELSAKML---NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
GWAV + R++ A M+ + NLN + D+ + LI V++ G+ + E+Y+DTVG
Sbjct: 143 GWAVSALSARDIGANMMRPASAAAYNLNAQAFDATVALIRGVMDRGVNVAEIYVDTVGPP 202
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--------------- 117
YQ +L + FP+ + V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 203 ATYQKRLERVFPTARVTVAKKADSLYPCVSAASVCAKVTRDAALEVLYKTVLRPPAAAPG 262
Query: 118 GWIFEETAE--NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
G E+ E N ++GSGYP D W+ + H +FG+ RFSWGT
Sbjct: 263 GEEAEQDDEEGNEQASWGSGYPSDARCVTWMRRNMHPVFGWGPECRFSWGT 313
>gi|239613574|gb|EEQ90561.1| ribonuclease HI large subunit [Ajellomyces dermatitidis ER-3]
gi|327352659|gb|EGE81516.1| ribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 343
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 109/208 (52%), Gaps = 24/208 (11%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLTEVYLDT 68
S GW V ++ R++SA ML NLN + D+ LI ++ G+ + EVY+DT
Sbjct: 121 STSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREVYIDT 180
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET---- 124
+G+ E YQ KL + FPS+K V+KKADSLYP VS ASI AKVTRD L I E
Sbjct: 181 IGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALE--ICYEALLKQ 238
Query: 125 -----AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEV 177
++ +GSGYP D + +WL + +FG+ RFSWGT K V V
Sbjct: 239 RDTVKQDSTTEGWGSGYPSDSKCVSWLKNDMDTLFGWGYECRFSWGTARELLESKTGVRV 298
Query: 178 LWESDEMDE--------DVSSRRSGKRQ 197
W +E +E +S+ R+G +
Sbjct: 299 DWPVEEDEEAQRLTNFFSISATRAGNNE 326
>gi|119496273|ref|XP_001264910.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
gi|119413072|gb|EAW23013.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
Length = 363
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 98/174 (56%), Gaps = 20/174 (11%)
Query: 11 ASNPF----GWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLN-IGILLTE 63
A NP GWA ++ R++SA M+ NLN + D+ + +I ++ + + E
Sbjct: 136 AGNPLHASCGWATKVLSARDISAGMMRPASGAYNLNAQAMDATVEIIRGIVEERRVDIRE 195
Query: 64 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 123
VY+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAKVTRD L E
Sbjct: 196 VYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDVALE--FCHE 253
Query: 124 TAENMHR-----------NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
+ R ++GSGYP D + +WL +H IFG+ + RFSWGT
Sbjct: 254 AVYGLQRSEAPSLGVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECRFSWGT 307
>gi|346323837|gb|EGX93435.1| ribonuclease HI large subunit [Cordyceps militaris CM01]
Length = 338
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 16 GWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA + R++ A ML NLN + D+ + LI V G+ + E+Y+DT+G
Sbjct: 125 GWATAALSARDIGANMLQPVGAYNLNAQAMDATVDLIRGVYARGVNVQEIYVDTIGPPAT 184
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN--- 131
YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L + H+
Sbjct: 185 YQAKLQRIFPTAKVTVAKKADSLYACVSAASVCAKVTRDVALETLYEDRKDPADHQGDED 244
Query: 132 -----FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK---DIVEVLWESDE 183
+GSGYP D W+ + H +FG+ RFSWGT + + V+V W D+
Sbjct: 245 DGAPAWGSGYPSDGRCTGWMRGNLHPVFGWGPECRFSWGTAKDMLEAKGNGVKVEWPVDD 304
Query: 184 MDE 186
E
Sbjct: 305 DGE 307
>gi|255931627|ref|XP_002557370.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581989|emb|CAP80150.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 343
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 110/202 (54%), Gaps = 18/202 (8%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
G+A+ ++ R++S+ M+ NLN + D+ + +I V+ + G+ + EVY+DT+G+
Sbjct: 129 GYAIKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDVREVYIDTIGNP 188
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH--- 129
YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L ++E + H
Sbjct: 189 ATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALE-VMYEAVLQAEHSLS 247
Query: 130 ---RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWESDE- 183
+GSGYP D + WL + +FG+ + RFSWGT K V W DE
Sbjct: 248 PTSETWGSGYPSDSKCVGWLRRNMDPVFGWGNECRFSWGTAKEMLEMKGGARVDWPDDEE 307
Query: 184 -----MDEDVSSRRSGKRQLKL 200
+DE + S GK K+
Sbjct: 308 EGAHRLDEFLLSSAPGKSTGKV 329
>gi|148665343|gb|EDK97759.1| phosphatidylinositol glycan anchor biosynthesis, class Z [Mus
musculus]
Length = 799
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 85/147 (57%), Gaps = 20/147 (13%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGDAEK 74
GW++D++ P +S ML + K NLN +SHD+A LI +I G ++T +
Sbjct: 91 GWSLDVLSPNLISISMLGRVKYNLNSLSHDTAAELIWNARDIPGSIITAL---------- 140
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
I+ V KADSL+PVVS ASI AKVTRD+ ++ W F E +++ ++GS
Sbjct: 141 ---------SGIEVTVKAKADSLFPVVSAASIFAKVTRDKAVKNWQFVEILQDLDSDYGS 191
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVR 161
GYP DP+TKAWL H +FGFP +
Sbjct: 192 GYPSDPKTKAWLRRHVDPVFGFPQFAQ 218
>gi|167378158|ref|XP_001734698.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
gi|165903720|gb|EDR29164.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
Length = 270
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEK 74
G++ I+ P +S M K++LNEI+ + +I +++ I + +Y DTVG + K
Sbjct: 74 GFSTRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRISQRKIVHIYCDTVGPSGK 133
Query: 75 YQAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-R 130
YQ ++ F IK V KAD LYPVVS ASI AKVTRD L WI+EE N+ +
Sbjct: 134 YQMMIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLDNWIYEE--RNIQTK 191
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
G GYP D +T W+ +FG+P+LVRF W T K I+E E V
Sbjct: 192 QVGCGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE---------EKVPM 238
Query: 191 RRSGKRQLKLSDIGFSSSK 209
+R Q K +G SK
Sbjct: 239 KRPFPYQNKQDVVGVIQSK 257
>gi|406864455|gb|EKD17500.1| ribonuclease HII [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 359
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 98/183 (53%), Gaps = 27/183 (14%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAV+++ R++ A M+ NLN + D+ I LI V G+ + E+++DT+G+ E
Sbjct: 135 GWAVEVMSARDIGANMMKPAATYNLNAQAMDATIMLIKGVYERGVNVKEIFIDTIGNPET 194
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT------------------- 115
YQ KL + FP+ K V+KKADSLYP VS AS+ AKVTRD
Sbjct: 195 YQRKLQRIFPTAKVTVAKKADSLYPCVSAASVCAKVTRDAAMEVLYDSYLSKTSDGEEDV 254
Query: 116 -LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI 174
+ G + AE ++GSGYP D +WL +FG+ RFSWGT KD+
Sbjct: 255 EMEGTKMAKAAE--ESSWGSGYPSDARCTSWLKRSMDPVFGWGPECRFSWGTA----KDM 308
Query: 175 VEV 177
++V
Sbjct: 309 LDV 311
>gi|327297598|ref|XP_003233493.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
gi|326464799|gb|EGD90252.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
Length = 361
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 106/194 (54%), Gaps = 25/194 (12%)
Query: 16 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGD 71
GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI + EVY+DT+G
Sbjct: 135 GWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETHGIDVKEVYVDTIGK 194
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG----WIF------ 121
E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L W+
Sbjct: 195 PETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESWLNQREKQR 254
Query: 122 --------EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HF 171
E TAE + +GSGYP D + WL + +FG+ RFSWGT
Sbjct: 255 AVATGEDEESTAEEI-LTWGSGYPSDGKCVGWLKKDMNRLFGWGYECRFSWGTSKELLEI 313
Query: 172 KDIVEVLWESDEMD 185
K ++V W ++E D
Sbjct: 314 KSGLKVDWPTEEDD 327
>gi|366995529|ref|XP_003677528.1| hypothetical protein NCAS_0G02890 [Naumovozyma castellii CBS 4309]
gi|342303397|emb|CCC71176.1| hypothetical protein NCAS_0G02890 [Naumovozyma castellii CBS 4309]
Length = 299
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 16 GWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
G+A +I P ++S+ ML NLN+ +HD + LI VL+ G+ L+ VY+DTVG
Sbjct: 99 GYATTVITPTDISSGMLRFPPSKNYNLNQQAHDVTMDLIKGVLDRGVQLSHVYVDTVGPP 158
Query: 73 EKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL RFP + F V+KKADSLY VVS AS+VAKVTRD + E +
Sbjct: 159 ASYQKKLEDRFPEVGAFTVAKKADSLYCVVSVASVVAKVTRDI-----LVESLKRSDDEI 213
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKD----IVEVLWESDEMDE 186
GSGYP DP+T WL + + +FG+P +VRFSW TC + KD + + WE D
Sbjct: 214 IGSGYPSDPKTVKWLRETQTPLFGWPIEMVRFSWQTCQTLMKDGNNGSIPIEWEEDF--- 270
Query: 187 DVSSRRSGKRQLKLSD 202
++S+++ +Q L D
Sbjct: 271 -INSKKNMAQQWTLDD 285
>gi|50310553|ref|XP_455296.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644432|emb|CAG98004.1| KLLA0F04774p [Kluyveromyces lactis]
Length = 304
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 99/176 (56%), Gaps = 12/176 (6%)
Query: 16 GWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
G+A I ++S+ M + NLNE +HD I LI VL G+ + VY+DTVG
Sbjct: 111 GYATTSITACDISSGMFRFPPEKNYNLNEQAHDVTIALIDDVLKSGVKVGHVYVDTVGPP 170
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
YQ KL FP KF V+KKADS+YP+VS AS+VAKVTRD I + +
Sbjct: 171 ISYQKKLESIFPQCKFTVAKKADSIYPIVSVASVVAKVTRDI-----ILSQCKKTEDEIL 225
Query: 133 GSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTCTSHF---KDIVEVLWESDEM 184
GSGYPGD +T WL + + G+ P +VRFSW TC + K +E+ WE D M
Sbjct: 226 GSGYPGDSKTVQWLRNEMKPLMGWSPYMVRFSWQTCATMLANSKSTIEIEWEEDAM 281
>gi|171689874|ref|XP_001909876.1| hypothetical protein [Podospora anserina S mat+]
gi|170944899|emb|CAP71010.1| unnamed protein product [Podospora anserina S mat+]
Length = 342
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 96/177 (54%), Gaps = 20/177 (11%)
Query: 16 GWAVDIIDPRELSAKMLNKNK----INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
GWA ++ ++SA M+ + NLN + D+ + LI + + G+ + E+Y+DT+G
Sbjct: 122 GWATTLLSAGDISAGMMRPSNAGGSYNLNAQAMDATVQLIQGIYDRGVNIQEIYVDTIGQ 181
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL------------RGW 119
YQ KL + FP+ K V+KKADSLYP VS AS+ AKVTRD L R
Sbjct: 182 PAAYQKKLERIFPTAKITVAKKADSLYPCVSAASVCAKVTRDAALEVLWKTRGRPPAREE 241
Query: 120 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
++ E+ +GSGYP D WL + H +FG+ RFSWGT KD++E
Sbjct: 242 EKDKNEEDTDMEWGSGYPSDQRCVTWLRGNMHPVFGWGPECRFSWGTA----KDMLE 294
>gi|302657829|ref|XP_003020627.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
gi|291184480|gb|EFE40009.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
Length = 361
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 104/193 (53%), Gaps = 23/193 (11%)
Query: 16 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGD 71
GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI + EVY+DT+G
Sbjct: 135 GWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKEVYVDTIGK 194
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD-----------------R 114
E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD R
Sbjct: 195 PETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESWLNQREKQR 254
Query: 115 TLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFK 172
TL E T + +GSGYP D + WL + +FG+ RFSWGT K
Sbjct: 255 TLETGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVECRFSWGTSKELLEVK 314
Query: 173 DIVEVLWESDEMD 185
++V W ++E D
Sbjct: 315 SGLKVDWPAEEDD 327
>gi|11387103|sp|Q9P5X8.1|RNH2A_NEUCR RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|7800995|emb|CAB91392.1| probable 35 kDa ribonuclease H [Neurospora crassa]
Length = 317
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 86/139 (61%), Gaps = 9/139 (6%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSL 97
NLN+ + D+ I LI + G+ +T++++DT+G YQ KL + FP+ K V+KKADSL
Sbjct: 137 NLNQQAMDATIALIKGIYERGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSL 196
Query: 98 YPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP 157
YPVVS AS+VAKVTRD L E + +GSGYP D + +WL + H +FG+
Sbjct: 197 YPVVSAASVVAKVTRDIAL-----EVLWADRTMAWGSGYPSDSKCVSWLKQNMHPVFGWG 251
Query: 158 SLVRFSWGTCTSHFKDIVE 176
RFSWGT KD++E
Sbjct: 252 PECRFSWGTA----KDMLE 266
>gi|302510819|ref|XP_003017361.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
gi|291180932|gb|EFE36716.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
Length = 361
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 104/193 (53%), Gaps = 23/193 (11%)
Query: 16 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGD 71
GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI + EVY+DT+G
Sbjct: 135 GWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGINVKEVYVDTIGK 194
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG----WIF------ 121
E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L W+
Sbjct: 195 PETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESWLNQREKQR 254
Query: 122 -------EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFK 172
E T + +GSGYP D + WL + +FG+ RFSWGT K
Sbjct: 255 TLVTGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVECRFSWGTSKELLEIK 314
Query: 173 DIVEVLWESDEMD 185
++V W ++E D
Sbjct: 315 SGLKVDWPAEEDD 327
>gi|367034558|ref|XP_003666561.1| hypothetical protein MYCTH_2311349 [Myceliophthora thermophila ATCC
42464]
gi|347013834|gb|AEO61316.1| hypothetical protein MYCTH_2311349 [Myceliophthora thermophila ATCC
42464]
Length = 381
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 104/224 (46%), Gaps = 57/224 (25%)
Query: 16 GWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
GWAV + R++SA ML NLN + D+ + LI +V G+ + E+Y+DT+G
Sbjct: 129 GWAVTALSARDISAGMLRPGLAAYNLNAQAMDATVELIRQVYARGVNVREIYVDTIGQPA 188
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR------GW-------- 119
YQAKL + FP+ K V+KKADSLYP VS AS+ AKVTRD L GW
Sbjct: 189 AYQAKLERVFPTAKITVAKKADSLYPCVSAASVCAKVTRDVALETLWKAPGWKAGQVVGG 248
Query: 120 ---------------------------IFEETAENMHRNFGSGYPGDPETKAWLTDHKHI 152
+E A +GSGYP D AWL H
Sbjct: 249 GEEGEEKDGVEEEKEEERKEDEQQDQEEEQEQAGEASMAWGSGYPSDRRCVAWLKASMHP 308
Query: 153 IFGFPSLVRFSWGTCTSHFKDIVE----------VLWESDEMDE 186
+FG+ RFSWGT KDI+E V W ++E D+
Sbjct: 309 LFGWGPECRFSWGTA----KDILEAAPAKGGGVKVDWPANEDDD 348
>gi|238490075|ref|XP_002376275.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
gi|220698663|gb|EED55003.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
Length = 273
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 16/190 (8%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
GWA ++ R++S+ M+ NLN + D+ + LI ++ + + EVY+DT+G+
Sbjct: 57 GWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREVYIDTIGNP 116
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--------RGWIFEET 124
YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L + F++
Sbjct: 117 ATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDIVKAQQFDDP 176
Query: 125 AENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWES 181
++ ++GSGYP D + WL + IFG+ + RFSWGT K V+V W
Sbjct: 177 SQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEMLEMKGGVKVDWPP 236
Query: 182 DEMDEDVSSR 191
D DE+ R
Sbjct: 237 D--DENTQLR 244
>gi|358368996|dbj|GAA85612.1| ribonuclease HI large subunit [Aspergillus kawachii IFO 4308]
Length = 353
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 103/182 (56%), Gaps = 14/182 (7%)
Query: 16 GWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
GWAV ++ R++S+ M+ NLN + D+ I LI ++ + + + EVY+DT+G+
Sbjct: 135 GWAVKLLSARDISSGMMRPGAGAYNLNAQAMDATIELIRGIIEDRDMDVREVYIDTIGNP 194
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---RGWIFEETAEN-- 127
YQ KL + FPS++ V+KKADSLYP VS AS+ AKVTRD L I+E+
Sbjct: 195 ATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDLCHQAIYEDVRSEDA 254
Query: 128 ----MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWES 181
+ +++GSGYP D + WL + IFG+ + RFSWGT K +V W
Sbjct: 255 SEAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWGTAKELLELKGRPKVDWPG 314
Query: 182 DE 183
+E
Sbjct: 315 EE 316
>gi|403218559|emb|CCK73049.1| hypothetical protein KNAG_0M01960 [Kazachstania naganishii CBS
8797]
Length = 301
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 116/196 (59%), Gaps = 19/196 (9%)
Query: 15 FGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A +I ++S+ M + NLNE +H+ + LI L+ G+ L VY+DTVG
Sbjct: 100 LGYATTVITATDISSGMSRFPPSKQYNLNEQAHNVTMDLIQGCLDRGVKLHHVYVDTVGP 159
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL RFP +F V+KKADSL+ VVS AS+VAKVTRD I E+ + +
Sbjct: 160 PVSYQKKLEDRFPQQRFTVTKKADSLFCVVSVASVVAKVTRD------ILVESLG--YAD 211
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI---VEVLWESDEMDED 187
GSGYP DP TK WL DH+ +FG+P+ +VRFSW TC + + V++ WE D
Sbjct: 212 IGSGYPSDPRTKQWLRDHQMDLFGWPNHVVRFSWQTCRTLLEGNPHGVQIQWEEDF---- 267
Query: 188 VSSRRSGKRQLKLSDI 203
+S++++ +Q +L +
Sbjct: 268 ISTKKTMHKQWELQQL 283
>gi|400597529|gb|EJP65259.1| ribonuclease HII [Beauveria bassiana ARSEF 2860]
Length = 340
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 17/174 (9%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA + R++ A ML + NLN + D+ + LI V G+ + E+Y+DT+G
Sbjct: 125 GWATTALSARDIGANMLKPVGVYNLNAQAMDATVDLIKGVYARGVNVQEIYVDTIGPPAT 184
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-----------EE 123
YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L ++ E
Sbjct: 185 YQAKLQRIFPTAKVTVAKKADSLYACVSAASVCAKVTRDVALEA-VYRDRKDHPADHEEI 243
Query: 124 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 177
++ +GSGYP D AW+ + H +FG+ RFSW T KD++E
Sbjct: 244 DDDDTAMAWGSGYPSDARCTAWMRSNLHPVFGWGPECRFSWSTA----KDMLEA 293
>gi|83770969|dbj|BAE61102.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871226|gb|EIT80391.1| ribonuclease HI [Aspergillus oryzae 3.042]
Length = 363
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 16/190 (8%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
GWA ++ R++S+ M+ NLN + D+ + LI ++ + + EVY+DT+G+
Sbjct: 147 GWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREVYIDTIGNP 206
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--------RGWIFEET 124
YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L + F++
Sbjct: 207 ATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDIVKAQQFDDP 266
Query: 125 AENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWES 181
++ ++GSGYP D + WL + IFG+ + RFSWGT K V+V W
Sbjct: 267 SQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEMLEMKGGVKVDWPP 326
Query: 182 DEMDEDVSSR 191
D DE+ R
Sbjct: 327 D--DENTQLR 334
>gi|317137770|ref|XP_001727941.2| ribonuclease H2 subunit A [Aspergillus oryzae RIB40]
Length = 351
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 16/190 (8%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDA 72
GWA ++ R++S+ M+ NLN + D+ + LI ++ + + EVY+DT+G+
Sbjct: 135 GWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREVYIDTIGNP 194
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--------RGWIFEET 124
YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L + F++
Sbjct: 195 ATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDIVKAQQFDDP 254
Query: 125 AENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWES 181
++ ++GSGYP D + WL + IFG+ + RFSWGT K V+V W
Sbjct: 255 SQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEMLEMKGGVKVDWPP 314
Query: 182 DEMDEDVSSR 191
D DE+ R
Sbjct: 315 D--DENTQLR 322
>gi|342184180|emb|CCC93661.1| putative ribonuclease H [Trypanosoma congolense IL3000]
Length = 322
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 22/199 (11%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI-LLTEVYLDTVGDAE 73
F ++ P E++A M + NLN +SH A+ +I+++ G+ +L ++DTVG E
Sbjct: 101 FRTCTVVVTPDEIAAAMTGIHGTNLNTLSHQVAMSIISKLTLEGMGMLCAAFIDTVGPPE 160
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
YQ KLS RFP ++ VSKKA+ +P+V+ AS+VAK+ RD + E + + G
Sbjct: 161 TYQQKLSGRFPHLRITVSKKAELKFPIVAAASVVAKLERDSHI---------ERLGIDVG 211
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSL---VRFSWGTCTSHFKD---IVEVLWESDEMDED 187
SGYP DP+ W+ H H F P + VR SWG D V +++E D +
Sbjct: 212 SGYPSDPKVMTWVRSHVHRFFVVPRVHKFVRLSWGPVVQLANDPETCVPIVFEEDAKSK- 270
Query: 188 VSSRRS-----GKRQLKLS 201
V ++S GK+Q LS
Sbjct: 271 VEKKQSKGATDGKKQCLLS 289
>gi|121702279|ref|XP_001269404.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
gi|119397547|gb|EAW07978.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
Length = 362
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 95/171 (55%), Gaps = 15/171 (8%)
Query: 11 ASNPF----GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLTE 63
A NP GWA ++ R++S+ M+ NLN + D+ + +I ++ + + E
Sbjct: 137 AGNPLHASCGWATKLLSARDISSGMMRPGSGVYNLNAQAMDATVEIIRGIVEERKVDVRE 196
Query: 64 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW---- 119
VY+DT+G+ YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 197 VYIDTIGNPATYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHDAF 256
Query: 120 ----IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
E + E ++GSGYP D + WL H +FG+ + RFSWGT
Sbjct: 257 QALQQLETSHEMATDSWGSGYPSDSKCVNWLRKHMDPVFGWGNECRFSWGT 307
>gi|326472233|gb|EGD96242.1| ribonuclease H2 subunit A [Trichophyton tonsurans CBS 112818]
Length = 361
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 25/194 (12%)
Query: 16 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIG-ILLTEVYLDTVGD 71
GWAV ++ R++S+ ML + NLN + D+ I +I V+ I + EVY+DT+G
Sbjct: 135 GWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDVKEVYVDTIGK 194
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG----WIFEE---- 123
E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L W+ +
Sbjct: 195 PETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESWLNQREKQK 254
Query: 124 ----------TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HF 171
TAE + +GSGYP D + WL + +FG+ + RFSWGT
Sbjct: 255 TLATGEDKTATAEEI-LTWGSGYPSDGKCVGWLKKDMNRLFGWGAECRFSWGTSKELLEV 313
Query: 172 KDIVEVLWESDEMD 185
K ++V W ++E D
Sbjct: 314 KSGLKVDWPAEEDD 327
>gi|296810182|ref|XP_002845429.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
gi|238842817|gb|EEQ32479.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
Length = 342
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 105/197 (53%), Gaps = 24/197 (12%)
Query: 13 NPFGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIG-ILLTEVYLDT 68
N GWAV ++ R++S+ ML + NLN + D+ I +I V+ I + EVY+DT
Sbjct: 113 NSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQRIDVKEVYVDT 172
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG----WIFE-- 122
+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L W+ +
Sbjct: 173 IGKPETHQARLLRVFPGLKITVAKKADSLYPSVSAASVCAKVTRDAALEACYDNWVNQRK 232
Query: 123 ----------ETAENMH--RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 170
E E ++GSGYP D + WL +FG+ + RFSWGT
Sbjct: 233 RKRAQESTGDEATEQQEDVMSWGSGYPSDGKCIGWLKKDMDPLFGWGTECRFSWGTSKEL 292
Query: 171 F--KDIVEVLWESDEMD 185
K ++V W ++E D
Sbjct: 293 LETKSGLKVDWPAEEED 309
>gi|302927067|ref|XP_003054420.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
77-13-4]
gi|256735361|gb|EEU48707.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
77-13-4]
Length = 343
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 10/165 (6%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWA+ + R+++ ML+ NLN + D+ + LI G+ + E+Y+DTVG
Sbjct: 136 GWAIKALSARDITTGMLHPTTTYNLNAQALDATVDLIKAAYAAGVNVQEIYVDTVGPPAS 195
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN--- 131
+QAKL + FP+ K V+KKADSL+ VS AS+ AKVTRD TL + + + N
Sbjct: 196 HQAKLQRFFPTAKITVTKKADSLFACVSAASVCAKVTRDATLE--VLSDAKGELTENGMG 253
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
+GSGY D W+ + H +FG+ RF WGT KD++E
Sbjct: 254 WGSGYSSDKRCTGWMKNSMHPLFGWGHECRFGWGTS----KDMLE 294
>gi|71024097|ref|XP_762278.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
gi|46101780|gb|EAK87013.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
Length = 551
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 102/225 (45%), Gaps = 64/225 (28%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAV ++ P+++SA ML + INLN S + + LI VL G+ LTE+Y+DTVGD +
Sbjct: 150 LGWAVRVMSPQDISAGMLRRRPINLNAQSSQATVSLIAGVLESGVDLTEIYVDTVGDPKS 209
Query: 75 YQAKLSQRFP---SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET------- 124
Y LS FP IK+ V+ KAD++YP+V ASI AKVTRDR + W + E
Sbjct: 210 YSKLLSSYFPRHSHIKWTVTSKADAIYPIVGAASIAAKVTRDRCVDAWRYAEQQQQRLPA 269
Query: 125 --------------------------AENMHRNFGSGYPGDPETKAWLTDHKHI------ 152
A N + + P P+ A +D H+
Sbjct: 270 LPTDAAKPHQAKVLVDATNQPSCSPDASNESKKPNAESPSQPDL-ALSSDTDHVWSNLGA 328
Query: 153 ---------------------IFGFPSLVRFSWGTCTSHFKDIVE 176
+FG+P LVRFSW T + ++ V+
Sbjct: 329 LGSGYPADPNTVAFLKRTLDPVFGWPGLVRFSWATAKTMLEEKVK 373
>gi|326483287|gb|EGE07297.1| ribonuclease HI large subunit [Trichophyton equinum CBS 127.97]
Length = 323
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 103/184 (55%), Gaps = 27/184 (14%)
Query: 16 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIG-ILLTEVYLDTVGD 71
GWAV ++ R++S+ ML + NLN + D+ I +I V+ I + EVY+DT+G
Sbjct: 135 GWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDVKEVYVDTIGK 194
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG----WIFEE---- 123
E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L W+ +
Sbjct: 195 PETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESWLNQREKQK 254
Query: 124 ----------TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
TAE + +GSGYP D + WL + +FG+ + RFSWGT K+
Sbjct: 255 TLATGEDKTATAEEI-LTWGSGYPSDGKCVGWLKKDMNRLFGWGAECRFSWGT----SKE 309
Query: 174 IVEV 177
++EV
Sbjct: 310 LLEV 313
>gi|145479147|ref|XP_001425596.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392667|emb|CAK58198.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 93/160 (58%), Gaps = 12/160 (7%)
Query: 23 DPRELSAKMLNKNK-----INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY-- 75
+ REL+A+ L+KN+ INLN+ISH++A LI + G +TE+++DTVG + Y
Sbjct: 98 ETRELTAEYLSKNQLAHLTINLNDISHNTAAELIQSAIQKGYKITEIFVDTVGPKQTYKN 157
Query: 76 --QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
Q KL + VV +KADS Y VS ASI AKVTRD + I +E N + G
Sbjct: 158 FLQGKLQEIGKEANIVVEEKADSKYANVSAASICAKVTRDYRI-TLIQQEILPN--DSIG 214
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
SGYPGDP+TK +L + F +P VRFSW T + D
Sbjct: 215 SGYPGDPKTKKYLENTNIPFFVYPKYVRFSWQTIKTIIND 254
>gi|339242469|ref|XP_003377160.1| ribonuclease H2 subunit A [Trichinella spiralis]
gi|316974057|gb|EFV57595.1| ribonuclease H2 subunit A [Trichinella spiralis]
Length = 418
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 75/105 (71%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
S+ F + + ++ P +S ML ++K NLNEISHD+A+ LI V + G+++ +V LDTVG
Sbjct: 240 SHLFAYTMKLLSPVYISKSMLGRSKYNLNEISHDTAMELIQIVCDAGVVVDKVILDTVGP 299
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 116
EKY+AKL RFP I +VSKKADSL+ +VS ASI AKVTRD L
Sbjct: 300 TEKYEAKLRSRFPKIDILVSKKADSLHTIVSAASICAKVTRDNHL 344
>gi|170590300|ref|XP_001899910.1| ribonuclease HI large subunit [Brugia malayi]
gi|158592542|gb|EDP31140.1| ribonuclease HI large subunit, putative [Brugia malayi]
Length = 282
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 78/114 (68%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
FG+A + + +SA ML + K +LN++SHD AI L+ ++ I + +VY+DTVG +
Sbjct: 93 FGYACRSVSAQMISAAMLGRTKYSLNKLSHDCAIELLKLAVDNNINVVDVYVDTVGPKDP 152
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
YQA L ++FP ++ +VS+KAD+ +P+VS AS++AKV RDR LR W F E N+
Sbjct: 153 YQAMLHKKFPDMQIIVSEKADAKFPIVSAASVIAKVKRDRALRNWTFPEGIVNV 206
>gi|255718283|ref|XP_002555422.1| KLTH0G08976p [Lachancea thermotolerans]
gi|238936806|emb|CAR24985.1| KLTH0G08976p [Lachancea thermotolerans CBS 6340]
Length = 342
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 98/174 (56%), Gaps = 12/174 (6%)
Query: 16 GWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 72
G+A I ++S+ ML + NLNE +HD I LI VL G+ + VY+DTVG
Sbjct: 145 GYATTCISACDISSGMLRFPPEKNYNLNEQAHDVTIALIRGVLERGVAVEHVYVDTVGPP 204
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
YQ KL FPSIKF V+KKADSL+ VVS AS+VAKVTRD + E
Sbjct: 205 ATYQRKLEGLFPSIKFTVAKKADSLFCVVSVASVVAKVTRD-----VLIELLRARPDEVL 259
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF---KDIVEVLWESD 182
GSGYP D +T AWL ++ +FG+P VRFSW T + D V + WE D
Sbjct: 260 GSGYPSDAKTTAWLRSNRTALFGWPLQTVRFSWQTSQTLLDRNPDAVPIEWEDD 313
>gi|430812385|emb|CCJ30193.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 242
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 89/156 (57%), Gaps = 14/156 (8%)
Query: 25 RELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRF 83
RE+S ML + NLN +HD+ I L+ V + EVY+DTVG + YQ KL Q F
Sbjct: 43 REISQGMLRPDGSYNLNAQAHDTTIQLLFEVFKRNPGIKEVYVDTVGPSSSYQIKLQQLF 102
Query: 84 PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG--DPE 141
P +V++KADS+YP+VS ASI AKV+RD L A ++GSGYP DP
Sbjct: 103 PQTNVIVTEKADSIYPIVSTASICAKVSRDNAL------SKAAIHGESWGSGYPSDIDPI 156
Query: 142 TKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIVE 176
T WL IFG+P +VR+SW T KD++E
Sbjct: 157 TCKWLKYSMDPIFGWPYEIVRYSWQTA----KDLLE 188
>gi|115385935|ref|XP_001209514.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187961|gb|EAU29661.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 339
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 14/184 (7%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 72
GWA ++ +++S+ M+ NLN + D+ I +I ++ + + EVY+DT+G+
Sbjct: 126 GWATKLLTAQDISSGMMRPAAAAYNLNAQAMDATIEIIRGIVEERKVNVREVYIDTIGNP 185
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE--------T 124
YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L +EE
Sbjct: 186 ASYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDIALE-LCYEEIMKAKSLDQ 244
Query: 125 AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVLWESD 182
++ +GSGYP D + WL + +FG+ + RFSWGT K V W +
Sbjct: 245 SQTTTDTWGSGYPSDSKCVGWLRRNMDPVFGWGNECRFSWGTAKEMLELKGGARVDWPEE 304
Query: 183 EMDE 186
E ++
Sbjct: 305 ENEQ 308
>gi|388857401|emb|CCF49075.1| related to 35 kDa ribonuclease H [Ustilago hordei]
Length = 548
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 76/117 (64%), Gaps = 3/117 (2%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+V ++ P+++SA ML + INLN S + + LI VL G+ +TE+Y+DTVGD
Sbjct: 142 LGWSVRVMSPQDISAGMLRRRPINLNAQSSQATVLLIAGVLEEGVDVTEIYVDTVGDPNS 201
Query: 75 YQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
Y+ LS F P IK+ V+ KAD++YP+V ASI AKVTRDR + W + E +++
Sbjct: 202 YKKLLSSHFPRHPHIKWTVTSKADAIYPIVGAASIAAKVTRDRCIEAWKYAEQQQSL 258
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
GSGYPGDP T A+L +FG+P +VRFSW T + ++
Sbjct: 321 LGSGYPGDPNTVAFLKRTLDPVFGWPGIVRFSWATAKTMLEE 362
>gi|303388657|ref|XP_003072562.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
gi|303301703|gb|ADM11202.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
Length = 239
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 87/152 (57%), Gaps = 11/152 (7%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
FG+ P ++ +M+ +LNEIS S + ++ + + VY+D +GD EK
Sbjct: 74 FGYVYHCTHPDYIT-EMMQVKSTSLNEISLISVLKILEEIKAKCKKVDTVYVDALGDCEK 132
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y+A+L + +P KFV+ +KADS + +VSGASIVAKV RD + N GS
Sbjct: 133 YKARLEEAYP-YKFVIEEKADSKFQIVSGASIVAKVQRDILI---------SQFGSNLGS 182
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYP DP+T WL + + +FGFP VR+SW T
Sbjct: 183 GYPSDPDTIKWLKRNANAVFGFPPGVRYSWAT 214
>gi|401419840|ref|XP_003874409.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322490645|emb|CBZ25907.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 316
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 95/185 (51%), Gaps = 20/185 (10%)
Query: 26 ELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAEKYQAKLSQRFP 84
E+S M N NLN +SH++AI +I+ L L Y+DTVG YQA+L+ RFP
Sbjct: 117 EISNTMAGHNGRNLNALSHETAIQIISEATLASAGKLCAAYVDTVGPPGTYQARLAGRFP 176
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
++ V+KKA+S +P+VS AS+VAK RD + E + N GSGY DP T A
Sbjct: 177 HLRVTVAKKAESKFPIVSAASVVAKTARDAAI---------EALGENIGSGYLIDPRTMA 227
Query: 145 WLTDHKHIIFGFPSL---VRFSWGTCTSHFKD---IVEVLWESDEMDEDVSSRRSG--KR 196
WL H F F VR SWG D V V++E D E+ S + G R
Sbjct: 228 WLRSPVHRCFAFSHAYDSVRQSWGPVVQLANDSAVCVPVVFEQDP--EEASQQGGGGDNR 285
Query: 197 QLKLS 201
Q LS
Sbjct: 286 QQNLS 290
>gi|340501874|gb|EGR28608.1| ribonuclease large subunit, putative [Ichthyophthirius multifiliis]
Length = 258
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 77/118 (65%), Gaps = 8/118 (6%)
Query: 60 LLTEVYLDTVGDAEKYQAKLS----QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 115
L EVY+DTVG+ E YQ KL +++P IKF V +KAD+ +PVV ASI AKV RD+
Sbjct: 86 LHFEVYIDTVGNKETYQKKLENDYHKQYPQIKFCVKEKADADFPVVGAASICAKVIRDKE 145
Query: 116 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
+ E+ + ++ GSGYP DP+TK WL ++ +FGF ++VRFSW T + FK+
Sbjct: 146 IENQEIEKNSVSL----GSGYPSDPQTKKWLQNNFDGVFGFGNMVRFSWSTVENIFKE 199
>gi|19173027|ref|NP_597578.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|19168694|emb|CAD26213.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|449329688|gb|AGE95958.1| ribonuclease HII family protein [Encephalitozoon cuniculi]
Length = 239
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 92/152 (60%), Gaps = 11/152 (7%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
FG+A P ++ +M+ ++LNE+S S + ++ V + + +Y+D +GD K
Sbjct: 74 FGYAYHCSHPDYIT-EMMQVRSVSLNEVSIGSVLRILDEVQSKCRRVDTIYVDALGDCRK 132
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y+ +L + +P +FVV ++ADS + VVSGASIVAKV RD + E E++ GS
Sbjct: 133 YKERLEKDYP-YRFVVEERADSKFQVVSGASIVAKVQRD-----MLISEFGEDL----GS 182
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYP DPET WL + +++FGFP VR+SW T
Sbjct: 183 GYPSDPETIRWLRKNINVVFGFPPGVRYSWAT 214
>gi|67537888|ref|XP_662718.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
gi|40743105|gb|EAA62295.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
gi|259484559|tpe|CBF80886.1| TPA: ribonuclease HI large subunit (AFU_orthologue; AFUA_1G07600)
[Aspergillus nidulans FGSC A4]
Length = 339
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 99/167 (59%), Gaps = 10/167 (5%)
Query: 16 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDA 72
GWA ++ R++S+ M+ NLN + D+ I LI V+ L + EVY+DT+G+
Sbjct: 131 GWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELIRGVVEERKLNVREVYIDTIGNP 190
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN--MHR 130
YQ KL FPS++ V+KKADSLYP VS AS+VAKVTRD L +E EN +
Sbjct: 191 ASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRDVAL-DVCYEVLKENGGVGD 249
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 177
+GSGYP D + W+ + +FG+ + RFSWGT K+++EV
Sbjct: 250 GWGSGYPSDSKCVGWMRTNMDPVFGWGNECRFSWGTA----KEMLEV 292
>gi|401825683|ref|XP_003886936.1| ribonuclease HII [Encephalitozoon hellem ATCC 50504]
gi|392998093|gb|AFM97955.1| ribonuclease HII [Encephalitozoon hellem ATCC 50504]
Length = 239
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 86/152 (56%), Gaps = 11/152 (7%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
FG+ P ++ +M+ L+ IS S ++ + + VY+DT+GD EK
Sbjct: 74 FGYIYHCTHPDYIT-EMMQLRSTTLDRISIASVFQILDEIKTKCKKVEAVYVDTLGDCEK 132
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y++KL+ +P +FVV KKADS + VVSGASIVAKV RD + + GS
Sbjct: 133 YKSKLNASYP-YRFVVEKKADSKFQVVSGASIVAKVQRDVLI---------SEFGNDLGS 182
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYP DP+T WL + +++FGFP VR+SW T
Sbjct: 183 GYPSDPDTVEWLKRNANVVFGFPPGVRYSWST 214
>gi|71408510|ref|XP_806655.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
gi|70870462|gb|EAN84804.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 105/194 (54%), Gaps = 22/194 (11%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAEKYQAKL 79
++ P E++A M + NLN +SHD+AI +I++ L +L Y+DTVG E YQ +L
Sbjct: 107 VVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGPPESYQQRL 166
Query: 80 SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 139
S RFP ++ V+KKA++ +P+V+ AS+VAKV RDR + E + + GSGYP D
Sbjct: 167 SGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI---------ERLGIDVGSGYPSD 217
Query: 140 PETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD---IVEVLWESDEMDEDVSSRRS 193
P+ W+ H H F P VR SWG K+ V +L+E D + R +
Sbjct: 218 PKVMTWVRSHVHRFFVLPREFDFVRLSWGPVVELAKNKDVCVPILFEEDAKTKAEKKRAT 277
Query: 194 ------GKRQLKLS 201
GK+Q LS
Sbjct: 278 SGGSSDGKKQRLLS 291
>gi|407835034|gb|EKF99119.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 105/194 (54%), Gaps = 22/194 (11%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAEKYQAKL 79
++ P E++A M + NLN +SHD+AI +I++ L +L Y+DTVG E YQ +L
Sbjct: 107 VVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGPPESYQQRL 166
Query: 80 SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 139
S RFP ++ V+KKA++ +P+V+ AS+VAKV RDR + E + + GSGYP D
Sbjct: 167 SGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI---------ERLGIDVGSGYPSD 217
Query: 140 PETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD---IVEVLWESDEMDEDVSSRRS 193
P+ W+ H H F P VR SWG K+ V +L+E D + R +
Sbjct: 218 PKVMTWVRSHVHRFFVLPREFDFVRLSWGPVVELAKNTDVCVPILFEEDTKTKAEKKRAT 277
Query: 194 ------GKRQLKLS 201
GK+Q LS
Sbjct: 278 SGGGSDGKKQRLLS 291
>gi|453087271|gb|EMF15312.1| ribonuclease H-like protein [Mycosphaerella populorum SO2202]
Length = 374
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 44/219 (20%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI----------------NLNEISHDSAIGLITRVL-NIG 58
GWA+ + +++S+ ML NLN + ++ I LI ++L ++
Sbjct: 128 GWAIRSLSAQDISSSMLRPTHTPFTSTSGAINATPQISNLNNQAIEATITLIHQILYDLK 187
Query: 59 ILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 118
I + +Y+DT+G E YQAKL + FP++K V+KKADSL+P VS AS+ AKVTRD L
Sbjct: 188 INIQHIYIDTIGKPEIYQAKLEKIFPAVKITVAKKADSLFPCVSAASVCAKVTRDAALEV 247
Query: 119 WIFE-----------ETAE----NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFS 163
+ ++AE +GSGYP D WL ++ +FG+ + RFS
Sbjct: 248 LYMKSAEEEERRRRNDSAEVKTTTTTMAWGSGYPSDVRCANWLKNNMDPVFGWGNECRFS 307
Query: 164 WGTCTSHFKDIVEVL-------W-ESDEMDEDVSSRRSG 194
WGT K+++EV W E+D+ +E+ + + +G
Sbjct: 308 WGTA----KELLEVRGAPCRVDWPEADDAEENDNMKLTG 342
>gi|340057120|emb|CCC51462.1| putative ribonuclease H [Trypanosoma vivax Y486]
Length = 378
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 123/228 (53%), Gaps = 32/228 (14%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAEKYQAKL 79
+I P E++A M + INLN +SH++A +I+++ L +L Y+DTVG EKY++KL
Sbjct: 163 VITPDEIAAAMTGIHGINLNTLSHNAATSIISQLTLQAAGMLCAAYVDTVGPPEKYESKL 222
Query: 80 SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 139
S RFP ++ VSK+A+S +P+V+ AS+VAKV RD +R + + GSGYP D
Sbjct: 223 SGRFPHLRVKVSKQAESKFPIVAAASVVAKVKRDGYIR---------RLGVDVGSGYPSD 273
Query: 140 PETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD---IVEVLWESDEMD--EDVSSR 191
P+ AW+ H H F P + VR SW K+ + +++E D E +SR
Sbjct: 274 PKAVAWVRSHVHRFFMVPRKYNFVRLSWSPVMQLGKEEGVCIPLVFEEDTKTKIEKKNSR 333
Query: 192 RS--GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
S GKRQ LS G + +R S + KL+ ++HF
Sbjct: 334 GSNDGKRQTLLS-FGKAPPRRHS-----------VYAHLLKLKMISHF 369
>gi|407397482|gb|EKF27762.1| ribonuclease H, putative [Trypanosoma cruzi marinkellei]
Length = 289
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 89/149 (59%), Gaps = 13/149 (8%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAEKYQAKL 79
++ P E++A M + NLN +SHD+AIG+I++ L +L Y+DTVG E YQ +L
Sbjct: 107 VVTPAEIAAAMTGIHGKNLNTLSHDTAIGIISKATLEATGMLCGAYIDTVGPPESYQQRL 166
Query: 80 SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 139
S RFP ++ V+KKA++ +P+V+ AS+VAKV RDR + E + + GSGYP D
Sbjct: 167 SGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI---------ERLGIDVGSGYPSD 217
Query: 140 PETKAWLTDHKHIIFGFP---SLVRFSWG 165
P+ W+ H H F P VR SWG
Sbjct: 218 PKVMTWVRSHVHRFFVLPREFDFVRLSWG 246
>gi|71409033|ref|XP_806884.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
gi|70870756|gb|EAN85033.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAEKYQAKLS 80
+ P E++A M + NLN +SHD+AI +I++ L +L Y+DTVG E YQ +LS
Sbjct: 108 VTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGPPESYQQRLS 167
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
RFP ++ V+KKA++ +P+V+ AS+VAKV RDR + E + + GSGYP DP
Sbjct: 168 GRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI---------ERLGIDVGSGYPSDP 218
Query: 141 ETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD---IVEVLWESDEMDEDVSSRRS- 193
+ W+ H H F P VR SWG K+ V +L+E D + R +
Sbjct: 219 KVMTWVRSHVHRFFVLPREFDFVRLSWGPVVELAKNTDVCVPILFEEDAKTKAEKKRATS 278
Query: 194 -----GKRQLKLS 201
GK+Q LS
Sbjct: 279 GGGSDGKKQRLLS 291
>gi|159118024|ref|XP_001709231.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
gi|157437347|gb|EDO81557.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
Length = 243
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 84/152 (55%), Gaps = 13/152 (8%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
FG I+ ++S ML +K +LN +S ++A L+ + L I + VY+D VG +
Sbjct: 65 FGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQ-LFISHEIEHVYIDLVGPESQ 123
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y A + + PSI + KAD+ YP+ ASIVAKV RDR N+ +GS
Sbjct: 124 YAAYIRELMPSIALTICAKADAKYPITGAASIVAKVIRDR------------NIKPQWGS 171
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYP DP+TK +L H I+GFP+ +R SW T
Sbjct: 172 GYPSDPKTKKYLDKTCHGIYGFPTHIRHSWET 203
>gi|403176171|ref|XP_003888919.1| hypothetical protein, variant, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375172134|gb|EHS64560.1| hypothetical protein, variant, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 320
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 11/134 (8%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 76
W V ++ P ++S M ++ NLN + D+ +I L++ L +Y+DT+G + +Q
Sbjct: 138 WNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQYNLQHIYVDTLGPPKTHQ 197
Query: 77 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR------ 130
KL Q FP IKF V KADS+YP+V AS+VAKVTRD + WI E+ R
Sbjct: 198 MKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDAIVSHWIHPESTHPQKRKSSQED 257
Query: 131 -----NFGSGYPGD 139
+ GSGYP D
Sbjct: 258 EDATTSLGSGYPSD 271
>gi|253748461|gb|EET02569.1| Ribonuclease HI, large sub [Giardia intestinalis ATCC 50581]
Length = 243
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 16/161 (9%)
Query: 6 ALPKWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 65
ALPK + FG +I ++S ML K +LN +S ++A L+ +V + VY
Sbjct: 59 ALPK---DDFGCNTAVISADQISRAMLAPRKTSLNLLSFEAARSLLYQVFT-SYEIEHVY 114
Query: 66 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 125
+D V +Y A + + P++ + KAD YP+ ASIVAKVTRDR ++
Sbjct: 115 IDLVSPESQYAAYIRELMPNLALTICAKADGKYPITGAASIVAKVTRDRHIKA------- 167
Query: 126 ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
+GSGYP DP+TK +L H I+GFP+ +R SW T
Sbjct: 168 -----QWGSGYPSDPKTKEYLDKACHSIYGFPAHIRHSWET 203
>gi|71747398|ref|XP_822754.1| ribonuclease H [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70832422|gb|EAN77926.1| ribonuclease H, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 326
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 16/169 (9%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI-LLTEVYLDTVGDAEKYQAKL 79
++ P E++A M + NLN +SH +AI +I+++ G+ +LT Y+DTVG E YQ KL
Sbjct: 107 VVTPDEIAAAMTGAHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDTVGPPESYQQKL 166
Query: 80 SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 139
S RFP ++ V+KKA+ +P+V+ AS+VAKV RD + E + + GSGYP D
Sbjct: 167 SGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHI---------ERLGIDVGSGYPSD 217
Query: 140 PETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD---IVEVLWESD 182
P+ W+ H H F P + VR SW T D + +++E D
Sbjct: 218 PKVMMWVRSHVHRFFVMPRECNFVRLSWAPVTQLANDPETCIPIVFEED 266
>gi|300702211|ref|XP_002995135.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
gi|239603960|gb|EEQ81464.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
Length = 235
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 12/152 (7%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
+ +A + P ++ KML+ +NLN+IS ++ + L+ V N + +++D +G +K
Sbjct: 71 YNYAYTALHPSYITTKMLSN--VNLNDISWNTVLNLLKLVCNAYTNIEGIFIDAIGTCDK 128
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
+ L K V KADS YPVVSGASIVAKVTRD L + +FGS
Sbjct: 129 LKEFLELNIKH-KCTVESKADSKYPVVSGASIVAKVTRDDLL---------SKFNISFGS 178
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYP DP TK WLT + IFG+ VR++W T
Sbjct: 179 GYPSDPVTKKWLTKEVNYIFGWGKSVRYTWNT 210
>gi|169806222|ref|XP_001827856.1| ribonuclease HII [Enterocytozoon bieneusi H348]
gi|161779304|gb|EDQ31327.1| ribonuclease HII [Enterocytozoon bieneusi H348]
Length = 252
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 25/178 (14%)
Query: 10 WASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 69
+ + +A +I+P ++ M N K NLN+I+ ++ + L+ + N + VY+D +
Sbjct: 61 YYATMMNFAYIVIEPIYITTYMNNHIK-NLNQIAEEAVVQLLNEINNKCKNVKMVYIDAL 119
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
G+ Y+ L F F + KAD+ Y VVS ASIVAK+ RD F N+H
Sbjct: 120 GNVSNYKKNLQAHF-KFNFTIEAKADATYEVVSAASIVAKINRDA-----FFSSKTNNIH 173
Query: 130 RNF------------------GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 169
N+ GSGYP DP T+ WL D+ H I GF S+VR SW T S
Sbjct: 174 ENYYTKLGYEELTSIKDFNHCGSGYPSDPHTQQWLKDNFHPISGFNSIVRHSWSTIQS 231
>gi|261332533|emb|CBH15528.1| ribonuclease H, putative [Trypanosoma brucei gambiense DAL972]
Length = 326
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 16/169 (9%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI-LLTEVYLDTVGDAEKYQAKL 79
++ P E++A M + NLN +SH +AI +I+++ G+ +LT Y+DTVG E YQ KL
Sbjct: 107 VVTPDEIAAAMTGVHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDTVGPPESYQQKL 166
Query: 80 SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 139
S RFP ++ V+KKA+ +P+V+ AS+VAKV RD + E + + GSGYP D
Sbjct: 167 SGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHI---------ERLGIDVGSGYPSD 217
Query: 140 PETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD---IVEVLWESD 182
P+ W+ H H F P + VR SW T D + +++E D
Sbjct: 218 PKVMMWVRSHVHRFFVMPRECNFVRLSWAPVTQLANDPETCIPIVFEED 266
>gi|396081059|gb|AFN82678.1| ribonuclease HII [Encephalitozoon romaleae SJ-2008]
Length = 239
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 11/152 (7%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+ P ++ +M+ +L+EIS +S ++ + + VY+D +G+ EK
Sbjct: 74 LGYVYHCTHPDYIT-EMMQLGSTSLDEISVNSVFRILDEIKAKCENVEGVYVDALGNCEK 132
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y+A+L +++P + FVV K+ADS + +VSGASIVAKV RD + + GS
Sbjct: 133 YKARLKKKYPYM-FVVEKRADSRFQIVSGASIVAKVQRDLMI---------SEFGNDLGS 182
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYP DP T WL + + +FGFP VR+SW T
Sbjct: 183 GYPSDPSTIRWLKRNTNAVFGFPPGVRYSWST 214
>gi|302413253|ref|XP_003004459.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
gi|261357035|gb|EEY19463.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
Length = 264
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 79/133 (59%), Gaps = 9/133 (6%)
Query: 16 GWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+AV + R++++ ML+ N NLN + D+ + +I V+ G+ + E+Y+DTVG
Sbjct: 137 GYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEIIKGVIARGVRVEEIYVDTVGQPAA 196
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
YQAKL + FPS+K V+KKADSLYP VS AS+ AKVTRD L E H+
Sbjct: 197 YQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKVTRDAAL------EVMYEAHKAANG 250
Query: 135 GYPG--DPETKAW 145
G+ G D E AW
Sbjct: 251 GHGGAEDGEGMAW 263
>gi|146103342|ref|XP_001469539.1| putative ribonuclease H [Leishmania infantum JPCM5]
gi|134073909|emb|CAM72648.1| putative ribonuclease H [Leishmania infantum JPCM5]
Length = 316
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAEKYQAKLS 80
+ P E+S + ++ NLN +SH++AI +I++ L L Y+ T G YQ +L+
Sbjct: 113 VSPEEISKTITGRSGRNLNTLSHETAIQIISKATLASAGKLCAAYVGTAGPPATYQERLA 172
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
RFP ++ V+KKADS +P+VS ASIVAK TRD + E + N GS P DP
Sbjct: 173 GRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAI---------EALGENIGSRCPSDP 223
Query: 141 ETKAWLTDHKHIIFGFP 157
T L H H F FP
Sbjct: 224 RTMERLRSHVHRFFVFP 240
>gi|183231893|ref|XP_001913636.1| ribonuclease H2 subunit A [Entamoeba histolytica HM-1:IMSS]
gi|169802278|gb|EDS89588.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 354
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEK 74
G++ I+ P +S M K++LNEI+ + +I +++ + +Y DTVG ++K
Sbjct: 74 GFSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKK 133
Query: 75 YQAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-R 130
YQA ++ F +K V KAD LYPVVS ASI AKVTRD L WI+EET N+ R
Sbjct: 134 YQAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNWIYEET--NIQTR 191
Query: 131 NFGSGYPGDPET 142
G GYP D +T
Sbjct: 192 QVGCGYPSDVDT 203
>gi|429962741|gb|ELA42285.1| ribonuclease HII [Vittaforma corneae ATCC 50505]
Length = 232
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 82/145 (56%), Gaps = 13/145 (8%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQ 81
I P +S+ M +NLNEI+ ++ I L+ +++ + VY+D +G+ E+Y+ L +
Sbjct: 76 IHPAYISSHM-EAGSMNLNEIAKEAVIYLLKDLVSKCPNVKTVYIDGLGNNEEYKKTLKK 134
Query: 82 RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPE 141
F S+ FV+ KADS Y VVSGASIVAKV RD ++ + N GSGY DP
Sbjct: 135 YF-SLNFVIENKADSKYQVVSGASIVAKVVRDASVARY-----------NCGSGYTSDPI 182
Query: 142 TKAWLTDHKHIIFGFPSLVRFSWGT 166
TK WL + GFP VR SW T
Sbjct: 183 TKEWLKSKYNKFLGFPDYVRHSWST 207
>gi|308159908|gb|EFO62424.1| Ribonuclease HI, large sub [Giardia lamblia P15]
Length = 243
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 13/152 (8%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
FG I+ ++S ML +K +LN +S ++A L+ ++ + VY+D V +
Sbjct: 65 FGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFT-SYEIEHVYIDLVSPESQ 123
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y + + P+I + KAD+ YP+ ASI+AKVTRD+ ++ +GS
Sbjct: 124 YATYIHELMPNIALTICAKADAKYPITGAASIIAKVTRDKHIK------------PQWGS 171
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GYP DP+TK +L H I+GFP+ +R SW T
Sbjct: 172 GYPSDPKTKEYLDKTCHSIYGFPTHIRHSWET 203
>gi|398024050|ref|XP_003865186.1| ribonuclease H, putative [Leishmania donovani]
gi|322503423|emb|CBZ38508.1| ribonuclease H, putative [Leishmania donovani]
Length = 316
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAEKYQAKLS 80
+ P E S + ++ NLN +SH++AI +I+ L L Y+ T G YQ L+
Sbjct: 113 VSPEEFSKTITGRSGRNLNTLSHETAIQIISEATLASAGKLCAAYVGTAGPPATYQEGLA 172
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
RFP ++ V+KKADS +P+VS ASIVAK TRD + E + N GS P DP
Sbjct: 173 GRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAI---------EALGENIGSSCPSDP 223
Query: 141 ETKAWLTDHKHIIFGFPSLVRF 162
T L H H F FP F
Sbjct: 224 RTMERLRSHVHRFFVFPHAYDF 245
>gi|440795142|gb|ELR16278.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 241
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADS 96
NLNE+S+D A GL VL GI L E+Y+D +G+ A L + FPSI V+ KAD
Sbjct: 83 NLNEVSYDPATGLNRDVLATGINLAELYVDALGNC----ATLQRLFPSICTIVLESKADV 138
Query: 97 LYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF 156
YP+VS ASIV K RD F+E + RN+G+GYP P K WL + +FG
Sbjct: 139 NYPIVSVASIVTKTLRDGITENLPFKECDITIDRNYGNGYPSTPAVKDWLRNQD--LFGL 196
Query: 157 PS 158
PS
Sbjct: 197 PS 198
>gi|409078396|gb|EKM78759.1| hypothetical protein AGABI1DRAFT_92329 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 237
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 72/127 (56%), Gaps = 16/127 (12%)
Query: 27 LSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV------------YLDTVGDAEK 74
+S+ M+ + INLN S ++ LI L GI LTEV Y+D +G+
Sbjct: 99 ISSGMMKRPPINLNVQSEEATFLLIRETLAKGIQLTEVLISSNQEALTDVYVDALGNTTT 158
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN----MHR 130
Y+ +LS+ FP I F V+ KADS + +V AS+ AKVTRD + W FEETA N ++
Sbjct: 159 YEKRLSELFPGITFTVTTKADSKFKIVGAASVAAKVTRDACIECWHFEETAGNDQVEWNK 218
Query: 131 NFGSGYP 137
FGSGYP
Sbjct: 219 AFGSGYP 225
>gi|336469012|gb|EGO57175.1| hypothetical protein NEUTE1DRAFT_123501 [Neurospora tetrasperma
FGSC 2508]
gi|350288681|gb|EGZ69906.1| hypothetical protein NEUTE2DRAFT_112272 [Neurospora tetrasperma
FGSC 2509]
Length = 381
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 56/79 (70%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSL 97
NLN+ + D+ I LI + G+ +T++++DT+G YQ KL + FP+ K V+KKADSL
Sbjct: 137 NLNQQAMDATIALIKGIYERGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSL 196
Query: 98 YPVVSGASIVAKVTRDRTL 116
YPVVS AS+VAKVTRD L
Sbjct: 197 YPVVSAASVVAKVTRDIAL 215
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 177
+GSGYP D + +WL + H +FG+ RFSWGT KD++E
Sbjct: 290 WGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTA----KDMLET 331
>gi|164422805|ref|XP_963372.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
gi|157069829|gb|EAA34136.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
Length = 381
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 56/79 (70%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSL 97
NLN+ + D+ I LI + G+ +T++++DT+G YQ KL + FP+ K V+KKADSL
Sbjct: 137 NLNQQAMDATIALIKGIYERGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSL 196
Query: 98 YPVVSGASIVAKVTRDRTL 116
YPVVS AS+VAKVTRD L
Sbjct: 197 YPVVSAASVVAKVTRDIAL 215
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 177
+GSGYP D + +WL + H +FG+ RFSWGT KD++E
Sbjct: 290 WGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTA----KDMLET 331
>gi|67613277|ref|XP_667290.1| ribonuclease HI large subunit [Cryptosporidium hominis TU502]
gi|54658405|gb|EAL37055.1| similar to ribonuclease HI large subunit (RNase HI large subunit)
[Cryptosporidium hominis]
Length = 144
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 65/114 (57%), Gaps = 9/114 (7%)
Query: 83 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF--------GS 134
FP I V KAD+L+P VSGASI+AKV RD L W + + E+ N GS
Sbjct: 4 FPGIDITVKPKADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISNYEQGS 63
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 187
GYPGDP+TK +L +FGFP++VRFSW T + KD V W E++ +
Sbjct: 64 GYPGDPKTKEFLRRVFDPVFGFPNIVRFSWSTASEIIEKDGYSVNWGELELNNN 117
>gi|126647908|ref|XP_001388063.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117151|gb|EAZ51251.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 144
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 65/114 (57%), Gaps = 9/114 (7%)
Query: 83 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF--------GS 134
FP I V KAD+L+P VSGASI+AKV RD L W + + E+ N GS
Sbjct: 4 FPGINITVKPKADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISNYEQGS 63
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 187
GYPGDP+TK +L +FGFP++VRFSW T + KD V W E++ +
Sbjct: 64 GYPGDPKTKDFLRRVFDPVFGFPNIVRFSWSTASEIIEKDGYSVNWGELELNNN 117
>gi|336258469|ref|XP_003344047.1| hypothetical protein SMAC_08904 [Sordaria macrospora k-hell]
gi|380087310|emb|CCC14315.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 397
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 56/79 (70%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSL 97
NLN+ + D+ I LI + G+ +T++++DT+G YQ KL + FP+ K V+KKADSL
Sbjct: 145 NLNQQAMDATIELIKGIYKRGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSL 204
Query: 98 YPVVSGASIVAKVTRDRTL 116
YPVVS AS+VAKVTRD L
Sbjct: 205 YPVVSAASVVAKVTRDIAL 223
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 127 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVLW 179
N +GSGYP D + WL + H +FG+ RFSWGT KD V+V W
Sbjct: 300 NEAMAWGSGYPSDSKCVTWLKQNMHPVFGWGPECRFSWGTAKDMLETKDGVKVDW 354
>gi|440493662|gb|ELQ76104.1| Ribonuclease HI [Trachipleistophora hominis]
Length = 414
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 80/170 (47%), Gaps = 43/170 (25%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI------------------------ 57
+ P+ +S +M ++ NLN+IS + I ++T +LN
Sbjct: 236 LHPQYISTEM---DRRNLNDISISAVIHILTTILNALDQPNSNTNQPNSNTKPSRKDNQT 292
Query: 58 --GILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 115
+T+VY+D +G KY+ L Q FP I FVV KADS Y V GASIVAKV RD
Sbjct: 293 RAAHTITKVYVDALGSTNKYEHILRQHFPHIPFVVEYKADSTYRCVGGASIVAKVVRDDL 352
Query: 116 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 165
LR + + GSGYP D T WL+ ++ +VRF W
Sbjct: 353 LRRFSVQ---------CGSGYPSDWRTVGWLSTNRE-----SEMVRFKWA 388
>gi|150402543|ref|YP_001329837.1| ribonuclease HII [Methanococcus maripaludis C7]
gi|189043625|sp|A6VGW0.1|RNH2_METM7 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150033573|gb|ABR65686.1| ribonuclease HII [Methanococcus maripaludis C7]
Length = 239
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 27/166 (16%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---VYLDTVGDAEK--- 74
+IDP ++ +M INLN+I +G +++ N I E +Y+D E+
Sbjct: 83 VIDPEKIDEQM---EIINLNKIE----LGAFSKLANHFIKENENISIYIDACSSNEQSFS 135
Query: 75 --YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHR 130
++AKL + +++ + KAD Y +VS ASI+AKVTRD + + IF E
Sbjct: 136 NQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKEIFGE------- 186
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
GSGYP DP+TK +L ++ H G P + R SW T + K+I E
Sbjct: 187 -IGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEIEE 231
>gi|401406283|ref|XP_003882591.1| Ribonuclease, related [Neospora caninum Liverpool]
gi|325117006|emb|CBZ52559.1| Ribonuclease, related [Neospora caninum Liverpool]
Length = 297
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 60/106 (56%), Gaps = 26/106 (24%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 73
P W++ I P E+SAKML K K +LNEISH++AI LI R + G+ + E
Sbjct: 31 PSLWSIHAIRPEEISAKMLRKKKHSLNEISHETAISLILRTVQSGVNVAE---------- 80
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 119
V++KADSLYPVVS ASI+AKV+RDR L W
Sbjct: 81 ----------------VAEKADSLYPVVSAASILAKVSRDRMLVQW 110
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 190
FGSGYPGD ET A+L + +FGF VRFSW T + I E E E+V
Sbjct: 195 TFGSGYPGDAETVAFLNKNCDPVFGFDGFVRFSWSTA----RLIFEKRGVPVEWYEEVEE 250
Query: 191 RRSGKRQLKLSDI-GFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+G + K S I F ++KR E + G R F KL+ L+
Sbjct: 251 EAAGASKAKQSRITNFFAAKR---EATAGGIDRAPFFVKSKLQLLSEL 295
>gi|296108883|ref|YP_003615832.1| ribonuclease HII [methanocaldococcus infernus ME]
gi|295433697|gb|ADG12868.1| ribonuclease HII [Methanocaldococcus infernus ME]
Length = 223
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 82/148 (55%), Gaps = 13/148 (8%)
Query: 27 LSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILL-TEVYLDTVG-DAEKYQAKLSQR 82
+SA+ LN+ NLNEI + I ++ L E+Y+D+ + EK++ KL +
Sbjct: 59 VSAEELNRLMKSKNLNEIEVELFAKAIKNLIEKHNLKDVEIYVDSCSPNREKFKRKLLSK 118
Query: 83 FP--SIK-FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 139
SIK +V KAD Y VVS ASI+AK RDR + E + ++ +FGSGYP D
Sbjct: 119 LRGLSIKDLIVEHKADEKYKVVSAASIIAKTERDREI------EELKKIYGDFGSGYPSD 172
Query: 140 PETKAWLTDHKHIIFGFPSLVRFSWGTC 167
P+TK +L + + FPS+VR W TC
Sbjct: 173 PKTKRFLLYYYNEYREFPSIVREHWETC 200
>gi|124027720|ref|YP_001013040.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
gi|189043606|sp|A2BL34.1|RNH2_HYPBU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|123978414|gb|ABM80695.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
Length = 240
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 35 NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKA 94
+ +NLN++ ++ + +R+ + VY+D VG EK A+LS R ++ + A
Sbjct: 80 DAVNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEKLAARLSGRL-GVRVIAEPGA 138
Query: 95 DSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT-DHKHII 153
D YP+VS ASIVAKV RD +R ++ GSGYP DPET AWL +++
Sbjct: 139 DKTYPIVSAASIVAKVVRDAEIR------MLRRLYGVRGSGYPTDPETIAWLAEEYRRNP 192
Query: 154 FGFPSLVRFSWGT 166
P VR +W T
Sbjct: 193 ANPPWFVRRTWST 205
>gi|134045249|ref|YP_001096735.1| ribonuclease HII [Methanococcus maripaludis C5]
gi|189043624|sp|A4FWE5.1|RNH2_METM5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|132662874|gb|ABO34520.1| RNase HII [Methanococcus maripaludis C5]
Length = 239
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 23/164 (14%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---VYLDTVGDAEK--- 74
+I+P ++ +M INLN+I +G +++ N I E +Y+D E+
Sbjct: 83 VINPEKIDEQM---EIINLNKIE----LGAFSKLANHFIKENENISIYIDACSSNEQSFS 135
Query: 75 --YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
++AKL + +++ + KAD Y +VS ASI+AKVTRD + E +
Sbjct: 136 NQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKKTFGEI 187
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
GSGYP DP+TK +L ++ H G P + R SW T + K+I E
Sbjct: 188 GSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEIEE 231
>gi|45358937|ref|NP_988494.1| ribonuclease HII [Methanococcus maripaludis S2]
gi|73917612|sp|Q6LXH7.1|RNH2_METMP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|45047803|emb|CAF30930.1| Ribonuclease HII [Methanococcus maripaludis S2]
Length = 242
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 21/163 (12%)
Query: 21 IIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK---- 74
+IDP + +M +N NKI L+ S S I NI I Y+D +E+
Sbjct: 86 VIDPETIDKQMEIINLNKIELSAFSKLSN-HFIRENDNISI-----YIDACSSSEQSFSN 139
Query: 75 -YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
++AKL + +++ + KAD Y +VS ASI+AKVTRDR + EE E G
Sbjct: 140 QFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-----VIEEYKETFGE-IG 191
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
SGYP DP+TK +L ++ + P + R SW T + K+I E
Sbjct: 192 SGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSKNLLKEIEE 234
>gi|340624684|ref|YP_004743137.1| ribonuclease HII [Methanococcus maripaludis X1]
gi|339904952|gb|AEK20394.1| ribonuclease HII [Methanococcus maripaludis X1]
Length = 242
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 21/163 (12%)
Query: 21 IIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK---- 74
+IDP + +M +N NKI L+ S S I NI I Y+D +E+
Sbjct: 86 VIDPETIDNQMEIINLNKIELSAFSKLSN-HFIRENDNISI-----YIDACSSSEQSFSN 139
Query: 75 -YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
++AKL + +++ + KAD Y +VS ASI+AKVTRDR + EE E G
Sbjct: 140 QFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-----VIEEYKETFGE-IG 191
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
SGYP DP+TK +L ++ + P + R SW T + K+I E
Sbjct: 192 SGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSKNLLKEIEE 234
>gi|429857939|gb|ELA32776.1| ribonuclease hi large subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 320
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 23/173 (13%)
Query: 16 GWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
G+A+ + R+LS ML NLN + D+ + LI V G+ + E+Y+DTVG
Sbjct: 132 GFAIRSLSARDLSTGMLRPGATYNLNAQAMDATVDLIKGVFARGVNVAEIYVDTVGQPAA 191
Query: 75 YQAKLSQRFPSIKFVVSKKA--DSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
YQAKL + FP+ K V++ A + LY + + +
Sbjct: 192 YQAKLQRFFPATKITVTRDAALEVLYRARAPEA------------------AEAEEGMAW 233
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVLWESDE 183
GSGYP D W+ + H +FG+ RFSWGT K ++V W D+
Sbjct: 234 GSGYPSDQRCVTWMRGNMHPVFGWGPECRFSWGTAKDMLEAKGSLKVEWPVDD 286
>gi|241154557|ref|XP_002407329.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
gi|215494090|gb|EEC03731.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
Length = 306
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 23/176 (13%)
Query: 12 SNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
S GW V++I P + MLN +K +LN ISHDSAIGLI + L+ G+ +TEV L
Sbjct: 87 SESLGWMVEVISPTVICNHMLNMSKYSLNAISHDSAIGLIKQALDDGVCVTEVKL----- 141
Query: 72 AEKYQAKLSQ-RFPSIKFVVSKKADSLYPVVSGASIVAKVTR--DRTLRGWIFEETAENM 128
E+ + L + + P ++ + +I+ ++ R F + +
Sbjct: 142 -ERPENPLHESKLPKLRHASRNTNRHAF---GARTIIFRIALLFHRHFECSTFHLSKKKF 197
Query: 129 HRN-----------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
H +G DP TK +L+ H +FGFPSLVRFSW T +D
Sbjct: 198 HGGRSMDCSNSLLLWGVVLLSDPATKKFLSAHVDNVFGFPSLVRFSWSTAEKLLED 253
>gi|378755758|gb|EHY65784.1| hypothetical protein NERG_01391 [Nematocida sp. 1 ERTm2]
Length = 352
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFV----VSKK 93
NLN++S + L+ + G+ + EV++DTVG+ + +AK+ K + V +K
Sbjct: 185 NLNDLSIGCILELLNTSIKSGVQMQEVFVDTVGNKQTLRAKVVDLLKDSKGIKNVTVEEK 244
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEET---AENMHRNFGSGYPGDPETKAWLTDHK 150
ADS Y VV ASI+AKVTRD + + ++ + SGYP D TK W+
Sbjct: 245 ADSKYQVVGAASILAKVTRDMFFENFDLSKMIYKGSSLPKIAVSGYPSDVNTKNWMKKSF 304
Query: 151 HIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 180
GFPS+ R +W K I+EVL E
Sbjct: 305 LSGLGFPSIFRIAW-------KPILEVLQE 327
>gi|387593201|gb|EIJ88225.1| hypothetical protein NEQG_01669 [Nematocida parisii ERTm3]
gi|387596086|gb|EIJ93708.1| hypothetical protein NEPG_01280 [Nematocida parisii ERTm1]
Length = 354
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 21/147 (14%)
Query: 32 LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFV-- 89
+NK NLN++S D + +++ + ++E+++DTVG+ + K+ R K +
Sbjct: 182 VNKQCQNLNDLSIDCILNMLSMCAGFNVPISEIFIDTVGNKKTLHEKVKNRMKEYKTIKK 241
Query: 90 --VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG---------SGYPG 138
V +KADS Y V ASI+AKVTRD +F E E ++ + SGYP
Sbjct: 242 ITVEEKADSKYQTVGAASILAKVTRD------MFLEMPEVVNIMYSEAKLPSMPISGYPS 295
Query: 139 DPETKAWLTDHKHII-FGFPSLVRFSW 164
D TK W+ +H I GFPS+ R +W
Sbjct: 296 DAATKNWM-EHSFISGIGFPSIFRITW 321
>gi|256811096|ref|YP_003128465.1| ribonuclease HII [Methanocaldococcus fervens AG86]
gi|256794296|gb|ACV24965.1| ribonuclease HII [Methanocaldococcus fervens AG86]
Length = 230
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 85/178 (47%), Gaps = 27/178 (15%)
Query: 5 AALPKWASNPFGWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIG 58
A L K N FG + +I L A+ +N + INLNEI ++ A LI + LNI
Sbjct: 50 AYLKKLLEN-FGCSEKLI----LEAEKINNLMDTINLNEIEINAFSEVAKNLIKK-LNIK 103
Query: 59 ILLTEVYLDTVGD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 109
E+YLD EK + + +R IK + KADS YPVVS ASI+AK
Sbjct: 104 DEEVEIYLDACSTNTKKFESDFKEKIRDVIEERNLKIKIIAEHKADSKYPVVSAASIIAK 163
Query: 110 VTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
RD + + + ++ + GSGYP D +T +L D+ P + R W TC
Sbjct: 164 AERDEIIENY------KKIYGDIGSGYPSDSKTIKFLEDYFKKHKKLPEITRTKWKTC 215
>gi|261402294|ref|YP_003246518.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
gi|261369287|gb|ACX72036.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
Length = 233
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 78/156 (50%), Gaps = 22/156 (14%)
Query: 27 LSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKL 79
L+A +N NKINLNEI ++ +GLI LN+ E+Y+D +A+K++ +L
Sbjct: 69 LTANEINTLMNKINLNEIEINAFSEVIMGLIND-LNLKDEYLEIYVDACSTNAKKFENEL 127
Query: 80 SQRFP--------SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
R IK + KAD YP+VS ASI+AK RD + E + +
Sbjct: 128 KNRIKDIENQKNLKIKVIAEHKADLKYPIVSSASIIAKADRDEII------EQYKKKYGE 181
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GSGYP DP+T +L + P++ R W TC
Sbjct: 182 IGSGYPSDPKTIKFLEKYFEEYGSLPNIARVHWKTC 217
>gi|147920602|ref|YP_685601.1| ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
gi|121688011|sp|Q0W5R8.1|RNH2_UNCMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|110620997|emb|CAJ36275.1| ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
Length = 224
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 13 NPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-D 71
N + + + ++ P+E+ A+ +++ NLN + + GLI T YLD +
Sbjct: 64 NKYKYELSVLPPQEIDARFESED--NLNRLEVNCFAGLIRSAKP-----TIAYLDACDVN 116
Query: 72 AEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
AE++ + + ++ V + +ADS YP+VS ASI+AKV RD +R E +E M
Sbjct: 117 AERFGINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIR-----EISEKMGE 171
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
+ GSGYP DP T ++L ++ P R SW T + D ++
Sbjct: 172 DVGSGYPADPVTISFLKNYYMKHKCLPDCARKSWKTSNAVIADCLQ 217
>gi|297618794|ref|YP_003706899.1| ribonuclease HII [Methanococcus voltae A3]
gi|297377771|gb|ADI35926.1| ribonuclease HII [Methanococcus voltae A3]
Length = 264
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 20/166 (12%)
Query: 21 IIDPRELSAKM--LNKNKINLNEIS------HDSAIGLITRVLNIGILLTEVYLDTVGDA 72
II +E+ A+M +N NKI LN S + GL + G L Y+D
Sbjct: 85 IITAKEIDAQMNIINLNKIELNGFSSIINKFYKDIYGLDENKRDSGFL---TYIDACSSN 141
Query: 73 E-----KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 127
E + +AKL + +I + KAD Y +VS ASI+AKV RD + + E E
Sbjct: 142 ETSFSNQLKAKLINK--NIDLIAEHKADDNYKIVSAASIIAKVNRDNIIDS--YNEKYEA 197
Query: 128 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
+ GSGYP DP+TK +L + P +VRFSW T K+
Sbjct: 198 LGYTIGSGYPSDPKTKKFLRQYLEDNKELPDIVRFSWNTTKKLLKE 243
>gi|10835820|pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
gi|10835821|pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 27/178 (15%)
Query: 5 AALPKWASNPFGWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIG 58
A L K N G+ ++ R L A+ +N+ N INLN+I ++ A LI + LNI
Sbjct: 50 AYLKKLLEN-LGY----VEKRILEAEEINQLXNSINLNDIEINAFSKVAKNLIEK-LNIR 103
Query: 59 ILLTEVYLDTVGD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 109
E+Y+D +K + + +R +IK + KAD+ YPVVS ASI+AK
Sbjct: 104 DDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAK 163
Query: 110 VTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
RD + + + ++ + GSGYP DP+T +L D+ P + R W TC
Sbjct: 164 AERDEIIDYY------KKIYGDIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTC 215
>gi|159905682|ref|YP_001549344.1| ribonuclease HII [Methanococcus maripaludis C6]
gi|238686969|sp|A9A9T9.1|RNH2_METM6 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|159887175|gb|ABX02112.1| ribonuclease HII [Methanococcus maripaludis C6]
Length = 239
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 21 IIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAK 78
+I P ++ +M N NKI L+ S A I NI I + + + +++AK
Sbjct: 83 VIAPEKIDEQMEITNLNKIELSAFSK-LANHFIKENENISIYIDACSSNEQSFSNQFKAK 141
Query: 79 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 138
L + +++ + KAD Y +VS ASI+AKVTRD + E + GSGYP
Sbjct: 142 LINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKKTFGEIGSGYPS 193
Query: 139 DPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
DP+TK +L + H G P + R SW T + K+I E
Sbjct: 194 DPKTKKFLKKYVHENKGLPKIARKSWATSKNLLKEIEE 231
>gi|15668305|ref|NP_247101.1| ribonuclease HII [Methanocaldococcus jannaschii DSM 2661]
gi|2495822|sp|Q57599.1|RNH2_METJA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|1590900|gb|AAB98116.1| ribonuclease HII (rnhB) [Methanocaldococcus jannaschii DSM 2661]
Length = 230
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 27/178 (15%)
Query: 5 AALPKWASNPFGWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIG 58
A L K N G+ ++ R L A+ +N+ N INLN+I ++ A LI + LNI
Sbjct: 50 AYLKKLLEN-LGY----VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEK-LNIR 103
Query: 59 ILLTEVYLDTVGD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 109
E+Y+D +K + + +R +IK + KAD+ YPVVS ASI+AK
Sbjct: 104 DDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAK 163
Query: 110 VTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
RD + + + ++ + GSGYP DP+T +L D+ P + R W TC
Sbjct: 164 AERDEIIDYY------KKIYGDIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTC 215
>gi|337283739|ref|YP_004623213.1| ribonuclease HII [Pyrococcus yayanosii CH1]
gi|334899673|gb|AEH23941.1| ribonuclease HII [Pyrococcus yayanosii CH1]
Length = 221
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 18/154 (11%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAEK 74
+++ +++P E+ A+ N++ + + + LN + + VY+D+ +E+
Sbjct: 63 YSIVLVEPPEIDARAGTMNELEVEKFAQ---------ALNSLKVKPDVVYVDSADVRSER 113
Query: 75 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ L ++ K V KAD+ YPVVS ASI+AKV RDR + E + +FG
Sbjct: 114 FGLALREKLAFDAKVVSEHKADAKYPVVSAASILAKVIRDREIEKLKLE------YGDFG 167
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
SGYP DP T+A+L D+ FP +VR +W T
Sbjct: 168 SGYPSDPRTRAFLEDYYRRHGDFPPMVRRTWKTV 201
>gi|413916143|gb|AFW56075.1| hypothetical protein ZEAMMB73_446071 [Zea mays]
Length = 73
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/42 (69%), Positives = 33/42 (78%)
Query: 138 GDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 179
DP+TK WL DHKH +FGFP+LVRFSWGTC FKD V+V W
Sbjct: 11 ADPDTKQWLEDHKHPVFGFPTLVRFSWGTCKPFFKDAVDVTW 52
>gi|70926382|ref|XP_735739.1| ribonuclease H1 large subunit [Plasmodium chabaudi chabaudi]
gi|56509666|emb|CAH81806.1| ribonuclease H1 large subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 133
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 45/57 (78%)
Query: 14 PFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 70
PFGW V ++ P+++SAKML K K NLNEISHD+AI +I VL+ G LTEV++DTVG
Sbjct: 77 PFGWRVHVLMPQDISAKMLKKQKYNLNEISHDTAISIIQHVLSRGCNLTEVFVDTVG 133
>gi|18978153|ref|NP_579510.1| ribonuclease HII [Pyrococcus furiosus DSM 3638]
gi|397652571|ref|YP_006493152.1| ribonuclease HII [Pyrococcus furiosus COM1]
gi|24638181|sp|Q8U036.1|RNH2_PYRFU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|18893958|gb|AAL81905.1| RNaseH II [Pyrococcus furiosus DSM 3638]
gi|393190162|gb|AFN04860.1| ribonuclease HII [Pyrococcus furiosus COM1]
Length = 224
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKY 75
+ + I+ P E+ + N++ + + + L L I L +Y D DA ++
Sbjct: 63 YKIVIVSPEEIDNRSGTMNELEVEKFA------LALNSLQIKPAL--IYADAADVDANRF 114
Query: 76 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
+ + +R K + KAD+ YPVVS ASI+AKV RD + E + + +FGS
Sbjct: 115 ASLIERRLNYKAKIIAEHKADAKYPVVSAASILAKVVRDEEI------EKLKKQYGDFGS 168
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GYP DP+TK WL ++ FP +VR +W T
Sbjct: 169 GYPSDPKTKKWLEEYYKKHNSFPPIVRRTWETV 201
>gi|336476394|ref|YP_004615535.1| ribonuclease HII [Methanosalsum zhilinae DSM 4017]
gi|335929775|gb|AEH60316.1| ribonuclease HII [Methanosalsum zhilinae DSM 4017]
Length = 217
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 25/166 (15%)
Query: 17 WAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAE 73
W + I P+++ K++ N+I ++ G + +VLN + + Y+D+V ++E
Sbjct: 64 WYIFEISPQQIDELRKVMTMNQIMVH--------GFL-KVLN-KLRPDKAYVDSVDVNSE 113
Query: 74 KYQAKLSQRFP-------SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 126
++ + L ++ I+ + +ADS+YP+VS ASI+AKV RD + E+ +
Sbjct: 114 RFGSTLKIKYSESNPGAKQIEIISKHRADSIYPIVSAASIIAKVRRDE-----LIEKIKK 168
Query: 127 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 172
M +FGSGYP DP+TK +L + FP VR SW TC + K
Sbjct: 169 EMGIDFGSGYPSDPKTKKFLEEWICENDSFPEFVRHSWKTCDNLIK 214
>gi|429964623|gb|ELA46621.1| ribonuclease HII [Vavraia culicis 'floridensis']
Length = 343
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 64 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 123
V++D +G+ +KY L + FPS+ F + KADS+Y V GASI+AKV RD L+ + E
Sbjct: 230 VFIDALGNTDKYLQILQRHFPSVPFTIKPKADSIYRCVGGASIIAKVVRDDLLKQFSAE- 288
Query: 124 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GSGYP D T WL ++ +VRF W
Sbjct: 289 --------CGSGYPSDWRTVKWLDTNREC-----EMVRFKWAC 318
>gi|347524319|ref|YP_004781889.1| ribonuclease HII [Pyrolobus fumarii 1A]
gi|343461201|gb|AEM39637.1| ribonuclease HII [Pyrolobus fumarii 1A]
Length = 234
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 14/137 (10%)
Query: 35 NKINLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKK 93
+++NLN I ++ L+ R ++I G L +VY+D VGD + A + + + + K
Sbjct: 78 DEVNLNVIERNTIAFLVGRAMDILGESLKKVYVDAVGDPRQIIAAIRRAGFMGEVIAEPK 137
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF---GSGYPGDPETKAWLTD-H 149
AD+ Y +V ASI+AKV RD + E + R + GSGYP DPET AW+ + +
Sbjct: 138 ADARYTIVGAASIIAKVYRDAVI---------EELRREYGVRGSGYPTDPETLAWIREAY 188
Query: 150 KHIIFGFPSLVRFSWGT 166
+ P VR SWGT
Sbjct: 189 EENPEEPPWFVRRSWGT 205
>gi|317765021|ref|NP_001187891.1| ribonuclease h2 subunit a [Ictalurus punctatus]
gi|308324252|gb|ADO29261.1| ribonuclease h2 subunit a [Ictalurus punctatus]
Length = 108
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 44/61 (72%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AEKY
Sbjct: 47 GWALQILSPNTISTSMLQRAKYNLNALSHDAAIGLVQYALDCGVQLKEVFVDTVGPAEKY 106
Query: 76 Q 76
+
Sbjct: 107 E 107
>gi|134104117|pdb|2DFF|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-204)-C
Length = 213
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 175
E + + GSGYP DP T+A+L ++ FP +VR W T +D++
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKITQDMI 209
>gi|410669623|ref|YP_006921994.1| ribonuclease HII [Methanolobus psychrophilus R15]
gi|409168751|gb|AFV22626.1| ribonuclease HII [Methanolobus psychrophilus R15]
Length = 214
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+Y+ K S++ + + +AD +YP+VS ASIVAKV RD + EE + + +FG
Sbjct: 121 EYEKKHSEKAGCMSIISKHQADCIYPIVSAASIVAKVRRDS-----LIEELKKEIGVDFG 175
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 172
SGYP DP+TK +L D P +VR+SW T + K
Sbjct: 176 SGYPSDPKTKQFLQDWFKEHGELPDIVRYSWKTAENVMK 214
>gi|307595739|ref|YP_003902056.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
gi|307550940|gb|ADN51005.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
Length = 218
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 18/153 (11%)
Query: 20 DIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD-AEKYQAK 78
+I++PR + + N +N+ E+ + AI LI R LN + VY+D+ E+Y+
Sbjct: 66 EIVEPRVID-NYVYMNALNILEV--EIAIKLINRALN-SVSPQVVYIDSPDPRPERYRDM 121
Query: 79 LSQ-RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR---NFGS 134
+ + +++ V AD L PVVS ASIVAKV RD + E +HR +FGS
Sbjct: 122 VKRGVVGNVEVVAMNNADKLIPVVSAASIVAKVIRDSII---------EELHREYGDFGS 172
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GYP DP T A+L D P +VR SW T
Sbjct: 173 GYPSDPRTMAFLRDWVKRHGDLPPIVRRSWSTV 205
>gi|325969836|ref|YP_004246028.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
gi|323709039|gb|ADY02526.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
Length = 198
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 26/157 (16%)
Query: 20 DIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAK 78
+II+P + + +N N +N+ E+ + I LI + L+ I + +Y+D+ E+++
Sbjct: 47 EIIEPVIID-RYVNMNALNILEV--EVTIKLINKALS-NIQVHTIYIDSPDPKPERFRDM 102
Query: 79 LSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR---NFGS 134
+ +R ++ + KAD L PVVS ASIVAKV RD + E +HR +FGS
Sbjct: 103 IMERVGGNVNVIAMNKADKLIPVVSAASIVAKVVRDSII---------ERLHREFGDFGS 153
Query: 135 GYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGTC 167
GYP DP T K W+ H P +VR SW T
Sbjct: 154 GYPSDPRTIAFLKRWIEKHG----DLPPIVRRSWSTA 186
>gi|57640740|ref|YP_183218.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
gi|7227922|sp|O74035.1|RNH2_PYRKO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|3551209|dbj|BAA32803.1| ribonuclease HII [Thermococcus kodakaraensis]
gi|57159064|dbj|BAD84994.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
Length = 228
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
E + + GSGYP DP T+A+L ++ FP +VR W T
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>gi|134104118|pdb|2DFH|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-212)-C
Length = 221
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
E + + GSGYP DP T+A+L ++ FP +VR W T
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>gi|14591420|ref|NP_143500.1| ribonuclease HII [Pyrococcus horikoshii OT3]
gi|7227917|sp|O59351.1|RNH2_PYRHO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|50513813|pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
gi|50513814|pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
gi|3258079|dbj|BAA30762.1| 220aa long hypothetical ribonuclease H II [Pyrococcus horikoshii
OT3]
Length = 220
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 14/170 (8%)
Query: 3 SEAALPKWASNPFGWAVDIIDPREL---SAKMLNKNKINLNEISHDSAIGLITRVLNIGI 59
S+ P F +DI+D + + K +++ ++NE+ + + + ++ I
Sbjct: 41 SKQLTPGQREKLFSKLIDILDDYYVLLVTPKEIDERHHSMNELEAEK---FVVALNSLRI 97
Query: 60 LLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLR 117
++Y+D+ D +++ + + V+++ KAD+ Y +VS ASI+AKVTRDR +
Sbjct: 98 KPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREI- 156
Query: 118 GWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
E + + FGSGYP DP TK WL ++ FP +VR +W T
Sbjct: 157 -----EKLKQKYGEFGSGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETA 201
>gi|14278500|pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From
Hyperthermophilic Archaeon, Thermococcus Kodakaraensis
Kod1
Length = 213
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
E + + GSGYP DP T+A+L ++ FP +VR W T
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>gi|14520734|ref|NP_126209.1| ribonuclease HII [Pyrococcus abyssi GE5]
gi|11387114|sp|Q9V1A9.1|RNH2_PYRAB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|5457950|emb|CAB49440.1| rnhB ribonuclease HII [Pyrococcus abyssi GE5]
gi|380741273|tpe|CCE69907.1| TPA: ribonuclease HII [Pyrococcus abyssi GE5]
Length = 224
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 16/153 (10%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKY 75
++V I+ P+++ + K ++NE+ ++ + + ++ + +Y+D+ AE++
Sbjct: 63 YSVVIVSPQDIDGR-----KGSMNELEVENFVKALN---SLKVKPEVIYIDSADVKAERF 114
Query: 76 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
+ R K V KAD+ Y +VS ASI+AKV RDR + E + + +FGS
Sbjct: 115 AENIRSRLAYEAKVVAEHKADAKYEIVSAASILAKVIRDREI------EKLKAEYGDFGS 168
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GYP DP TK WL + FP +VR +W T
Sbjct: 169 GYPSDPRTKKWLEEWYSKHGNFPPIVRRTWDTA 201
>gi|134104116|pdb|2DFE|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-200)-C
Length = 209
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
E + + GSGYP DP T+A+L ++ FP +VR W T
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTT 201
>gi|332157881|ref|YP_004423160.1| ribonuclease HII [Pyrococcus sp. NA2]
gi|331033344|gb|AEC51156.1| ribonuclease HII [Pyrococcus sp. NA2]
Length = 219
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 16/153 (10%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 76
++V ++ P+E+ + + +NL E+ L LN+ + +Y+D+ EK
Sbjct: 63 YSVVVVSPQEIDNR---SSSLNLLEVEK---FALALNSLNVK--PSRIYVDSADVDEKRF 114
Query: 77 AKL--SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
A L ++ + + + KAD+ Y VV+ ASI+AKV RDR + E + + +FGS
Sbjct: 115 ASLIRAKLNYNAEVIAEHKADAKYEVVAAASILAKVIRDREI------EKLKERYGDFGS 168
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GYP DP T+ WL ++ FP +VR SW T
Sbjct: 169 GYPSDPRTRRWLEEYYKEYGEFPPIVRRSWDTV 201
>gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix K1]
gi|150421651|sp|Q9YET5.2|RNH2_AERPE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|116062405|dbj|BAA79461.2| ribonuclease HII [Aeropyrum pernix K1]
Length = 225
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 15/135 (11%)
Query: 38 NLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEKYQAKLSQR-FPSIKFVVSKKAD 95
N+N + + +++R+++ +G+ + V +D GD + + L++ +V +KAD
Sbjct: 77 NINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDVQGLRLALTRLGIEPRSILVEEKAD 136
Query: 96 SLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFG 155
S YPVVS ASIVAKV RD L + M+ GSGYP DPET+ W+ + +F
Sbjct: 137 SRYPVVSAASIVAKVVRDARL------QVLRRMYGVRGSGYPSDPETREWVRE----VFA 186
Query: 156 ---FPSLVRFSWGTC 167
P ++R++W T
Sbjct: 187 RGEAPRVIRYTWSTV 201
>gi|333910258|ref|YP_004483991.1| ribonuclease HII [Methanotorris igneus Kol 5]
gi|333750847|gb|AEF95926.1| ribonuclease HII [Methanotorris igneus Kol 5]
Length = 232
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 20/154 (12%)
Query: 21 IIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD-----AE 73
II+P +L M K NKI LN S A G + + E+Y+D A
Sbjct: 70 IIEPEKLDELMKTKSLNKIELNAFSK-IANGFLKEIEG----NFEIYVDACSSNAKAFAN 124
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ +AK+ + P K + KAD YP+VS ASI+AKVTRD + E+ + + G
Sbjct: 125 QLRAKMIDKSP--KIIAEHKADEKYPIVSAASIIAKVTRDEII------ESYKKEYGEIG 176
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
SGYP DP+T +L + P + R SW T
Sbjct: 177 SGYPSDPKTINFLKKYVEEFGELPKIARKSWKTA 210
>gi|374635723|ref|ZP_09707316.1| ribonuclease HII [Methanotorris formicicus Mc-S-70]
gi|373561339|gb|EHP87576.1| ribonuclease HII [Methanotorris formicicus Mc-S-70]
Length = 234
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 77/156 (49%), Gaps = 26/156 (16%)
Query: 21 IIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD-----AE 73
II+P +L M KN KI LN S A G + + E+Y+D A
Sbjct: 74 IIEPEKLDELMKTKNLNKIELNAFSK-IANGFLKEIEG----NFEIYVDACSSNAKAFAN 128
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ +AK+ + P K + KAD YP+VS ASI+AKVTRD + + E + G
Sbjct: 129 QLKAKMIDKTP--KIIAEHKADEKYPIVSSASIIAKVTRDEIIEHYKKE------YGEIG 180
Query: 134 SGYPGDPETKAWLTDHKHII--FG-FPSLVRFSWGT 166
SGYP DP+T +L KH + FG P + R SW T
Sbjct: 181 SGYPSDPKTINFL---KHYVGEFGELPKIARKSWKT 213
>gi|345005256|ref|YP_004808109.1| ribonuclease HII [halophilic archaeon DL31]
gi|344320882|gb|AEN05736.1| ribonuclease HII [halophilic archaeon DL31]
Length = 217
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 32 LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRF-----PSI 86
++ + ++N + + +T V G L DT DAE++ +L ++
Sbjct: 69 IDDPETDMNSLGVAAQAEAVTAVAEPGDDLFADAADT--DAERFGRRLRDTILDGDGSAL 126
Query: 87 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 146
+ AD YPVVS AS+VAKV RDR + E E R GSGYP DP T+++L
Sbjct: 127 EVTAEHGADESYPVVSAASVVAKVERDR-----LMAEIDEEHGRAIGSGYPSDPTTRSFL 181
Query: 147 TDHKHIIFGFPSLVRFSWGTC 167
+ P+ R SW TC
Sbjct: 182 EGYVAEYGELPACARASWATC 202
>gi|307353890|ref|YP_003894941.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
gi|307157123|gb|ADN36503.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
Length = 212
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 15/147 (10%)
Query: 27 LSAKMLN--KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE-KYQAKLSQRF 83
LSA M++ ++ + +NEI S IT ++ Y+D E +Y +S
Sbjct: 64 LSAAMIDELRSSMTMNEIVARSHARAIT-----DLMPDTAYVDACDVNEVRYAETISGFL 118
Query: 84 PSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 142
+ +VSK KAD LY VVS ASIVAKVTRDR + E ++ N GSGYP DP+T
Sbjct: 119 KNDIAIVSKHKADDLYAVVSAASIVAKVTRDRMI------EDLKSQWGNIGSGYPSDPDT 172
Query: 143 KAWLTDHKHIIFGFPSLVRFSWGTCTS 169
A+L + PS+ R SW T ++
Sbjct: 173 IAFLKRYIEERGEPPSIARMSWKTISN 199
>gi|289192478|ref|YP_003458419.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
gi|288938928|gb|ADC69683.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
Length = 230
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 22/156 (14%)
Query: 27 LSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKL 79
L A+ +N+ + INLNEI ++ A LI + L I E+YLD +A+K++
Sbjct: 67 LEAEKINQLMSTINLNEIEINAFSKVAENLIEK-LGIKDEKIEIYLDACSTNAKKFENDF 125
Query: 80 SQRFPSI--------KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
++ +I K + KAD+ Y VVS ASI+AK RD + + + ++ +
Sbjct: 126 KEKLDNIIKERNLNVKIIAEHKADAKYSVVSAASIIAKAERDEIIDNY------KKIYGD 179
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GSGYP DP+T +L ++ P + R W TC
Sbjct: 180 IGSGYPSDPKTIKFLENYFKKHKKLPDIARTHWKTC 215
>gi|88191784|pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42)
Length = 212
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
E + + GSGYP DP T+A+L ++ FP +VR G
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGAGAI 201
>gi|20090807|ref|NP_616882.1| ribonuclease HII [Methanosarcina acetivorans C2A]
gi|34395791|sp|Q8TPF4.1|RNH2_METAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|19915872|gb|AAM05362.1| ribonuclease Hii [Methanosarcina acetivorans C2A]
Length = 223
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 15/114 (13%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPS--------IKFVVSKKADSLYPVVSGASIVAKVTRDR 114
VY D AE++ L +++ I+ + +AD++YPVVS ASI+AKV RD
Sbjct: 102 VYADAADVKAERFAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDE 161
Query: 115 TLRGWIFEETAENMHRNFGSGYPGDPETKAWLTD-HKHIIFGFPSLVRFSWGTC 167
+ EE + +FGSGYP DP+TKA+L K FP +VR SW T
Sbjct: 162 -----LIEEIKKEWSVDFGSGYPSDPKTKAFLLKWGKEHDGKFPEIVRQSWQTV 210
>gi|254167925|ref|ZP_04874774.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|197623216|gb|EDY35782.1| ribonuclease HII [Aciduliprofundum boonei T469]
Length = 212
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLS 80
I+P E+ A + ++ LNEI + L RV++ + +VY+D + +++ ++
Sbjct: 64 IEPEEIDA---LRERMTLNEIE----VELFARVIS-QLNGDKVYVDAADVNEDRFAEEIK 115
Query: 81 QRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 139
++ ++ + KADS YP+VS ASI+AKV RDR I EE E + FGSGYP D
Sbjct: 116 KKLGKDVEIISEHKADSKYPMVSAASIIAKVERDR-----IIEELKEELG-EFGSGYPSD 169
Query: 140 PETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 172
TK +L + P R SW + K
Sbjct: 170 DRTKRFLEKYVKEHNELPPHTRHSWKSAKRAMK 202
>gi|150401039|ref|YP_001324805.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
gi|189043622|sp|A6UUM1.1|RNH2_META3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150013742|gb|ABR56193.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
Length = 277
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 27 LSAKMLNK--NKINLNEISHDSAIGLITRVL-------------NIGILLTEVYLDTVGD 71
L AK ++K N INLN+I + LI VL E+Y+D
Sbjct: 86 LEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQTATPQIEIYIDACSS 145
Query: 72 AEK-YQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 125
EK + ++ + +IK + KAD Y +VS ASI+AKV RDR + +
Sbjct: 146 NEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKVIRDRKIEEY------ 199
Query: 126 ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI 174
+ ++ GSGYP D T+ +L ++ P + R SW T K I
Sbjct: 200 KKIYGEIGSGYPSDKITQKYLANYVEKNRELPEIARKSWNTSKKLLKKI 248
>gi|302348278|ref|YP_003815916.1| ribonuclease HII [Acidilobus saccharovorans 345-15]
gi|302328690|gb|ADL18885.1| Ribonuclease HII [Acidilobus saccharovorans 345-15]
Length = 223
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 9/109 (8%)
Query: 60 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 119
L+ +Y+D G+ +L + + VV KAD+ Y VVS ASI+AKV RDR +
Sbjct: 101 LVKAIYIDKFGELRILPGELKRLGFRGRLVVEPKADANYVVVSAASIIAKVIRDRRI--- 157
Query: 120 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTC 167
E +M+ GSGYP DP T +W+ K + G P ++R+SWGT
Sbjct: 158 ---EVLRSMYGVEGSGYPSDPLTVSWVM--KVLSSGARPPIIRYSWGTL 201
>gi|305663629|ref|YP_003859917.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
gi|304378198|gb|ADM28037.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
Length = 232
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFP----SIKFVVSKK 93
N+N++ ++ LI + ++I ++E+Y+D + K ++ SI +
Sbjct: 79 NINKLELNTVCRLIKKSISIVSTISEIYIDAFANPNKLLHYINSNCIASNRSINVYIEHG 138
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
AD+ Y VV ASIVAKV RD + + + ++ +FGSGYP D +T WL ++
Sbjct: 139 ADNKYVVVGAASIVAKVLRDTHI------DNLKKVYGDFGSGYPSDKKTIEWLRNYYAKH 192
Query: 154 FGFPSLVRFSWGTCT 168
P +VR SW T T
Sbjct: 193 NALPPIVRKSWSTIT 207
>gi|336122129|ref|YP_004576904.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
gi|334856650|gb|AEH07126.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
Length = 305
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 20/143 (13%)
Query: 63 EVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 117
++Y+D EK ++KL +IK + KAD Y +VS ASIVAKV RD+ +
Sbjct: 177 DIYIDACSSNEKAFSNQIKSKLVVYNDNIKIIAEHKADDKYKIVSAASIVAKVIRDKIID 236
Query: 118 GWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 177
+ + ++ GSGYP D T +L ++ P + R SW T + K+
Sbjct: 237 NY------KEIYGEIGSGYPSDKTTINYLKNYVKEHGTLPEIARKSWKTSKNILKEF--- 287
Query: 178 LWESDEMDEDVSSRRSGKRQLKL 200
DEM++ + R+ +Q+KL
Sbjct: 288 ---EDEMNK---TNRNNSQQMKL 304
>gi|150399435|ref|YP_001323202.1| ribonuclease HII [Methanococcus vannielii SB]
gi|189043627|sp|A6UQ18.1|RNH2_METVS RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150012138|gb|ABR54590.1| ribonuclease HII [Methanococcus vannielii SB]
Length = 244
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 21/124 (16%)
Query: 62 TEVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 116
++++D +E+ ++AKL + ++ + KAD Y +VS ASI+AKVTRD +
Sbjct: 125 VKIFIDACSSSEQSFLNQFKAKLINK--KVEIIAEHKADEKYKIVSAASIIAKVTRDNII 182
Query: 117 RGWIFEETAENMHRNFGSGYPGDPETKAWL----TDHKHIIFGFPSLVRFSWGTCTSHFK 172
+ E + GSGYPGDP+TK +L +HK + P + R SW T K
Sbjct: 183 ESYKEE------FGDIGSGYPGDPKTKEFLKRFVKEHKKL----PKIARGSWATSKKLLK 232
Query: 173 DIVE 176
+ E
Sbjct: 233 EFEE 236
>gi|242398404|ref|YP_002993828.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
gi|259494074|sp|C6A1I4.1|RNH2_THESM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|242264797|gb|ACS89479.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
Length = 224
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 20/168 (11%)
Query: 8 PKWASNPFGWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTE 63
PK F ++++D ELS + ++K + +N+ ++ +VLN + I
Sbjct: 46 PKKREELFEKIIELVDDYFILELSPEDIDKREGTMNDFEVEN----FAKVLNSLKIKPDL 101
Query: 64 VYLDTVG-DAEKYQAKLSQR---FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 119
VY+D + E++ + ++ +P K + KADS Y V+ ASI+AKVTRD+ +
Sbjct: 102 VYIDAADVNEERFGIVVREKLSFYP--KIIAEHKADSKYIPVAAASILAKVTRDKAI--- 156
Query: 120 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
E + ++ N GSGYP DP T+ +L ++ FP +VR SW T
Sbjct: 157 ---ERLKEIYGNIGSGYPSDPITRKFLEEYYKEHGSFPPVVRRSWKTL 201
>gi|432328903|ref|YP_007247047.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Aciduliprofundum sp. MAR08-339]
gi|432135612|gb|AGB04881.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Aciduliprofundum sp. MAR08-339]
Length = 213
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 16/149 (10%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKL 79
+++P E+ + + ++ LN+I + +I+++ + VY+D D E++ ++
Sbjct: 63 VVEPEEIDSL---RREMTLNDIEVELFARIISKMND-----EVVYVDAADVDEERFAREI 114
Query: 80 SQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 138
+ + ++SK KAD LYP VS ASI+AKV RDR I EE + M +FGSGYP
Sbjct: 115 ALKVRKDVNIISKHKADLLYPEVSAASIIAKVERDR-----IIEELKKKMG-DFGSGYPA 168
Query: 139 DPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
D TK +L ++ + P VR SW +
Sbjct: 169 DRRTKEYLEEYFNEHGDLPPNVRRSWKSA 197
>gi|389852952|ref|YP_006355186.1| ribonuclease HII [Pyrococcus sp. ST04]
gi|388250258|gb|AFK23111.1| Ribonuclease HII [Pyrococcus sp. ST04]
Length = 222
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+Y D AE++ ++ R + + KAD+ Y VVS ASI+AKV RD +
Sbjct: 102 IYADAADVKAERFAREIGARLSYNASIIAEHKADAKYEVVSAASILAKVIRDEEI----- 156
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTD--HKHIIFGFPSLVRFSWGTC 167
E + + +FGSGYP DP TK WL + KH FP +VR SW T
Sbjct: 157 -EKLKEEYGDFGSGYPSDPRTKKWLEEWFKKH--KSFPPIVRRSWETV 201
>gi|14324349|dbj|BAB59277.1| ribonuclease HII [Thermoplasma volcanium GSS1]
Length = 218
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
++ ++ P L+ M +++ LN+I + + L+++ I VY+D E+
Sbjct: 67 AYSYVVVSPETLNKDMASES---LNKIEENYILELLSKAEGI------VYIDCFDVIEER 117
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
K + + V KADS+YP VS ASIV+KV RDR + ++ AE + FGSG
Sbjct: 118 AEKYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DKIAEK-YGFFGSG 171
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
YP DP T +L S+ R W T
Sbjct: 172 YPSDPRTIDFLRKAMQQGLDLRSVARIHWET 202
>gi|435851233|ref|YP_007312819.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Methanomethylovorans hollandica DSM 15978]
gi|433661863|gb|AGB49289.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Methanomethylovorans hollandica DSM 15978]
Length = 216
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+Y K ++ + V +AD+ YP+VS ASIVAKV RD + +E + + G
Sbjct: 121 QYAKKYPEKSEELTVVSEHQADATYPIVSAASIVAKVRRDE-----LVKELINRIGIDLG 175
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
SGYP DP+TK +L D P VR SW T + K+
Sbjct: 176 SGYPSDPKTKRFLEDWSREHGTLPDFVRHSWKTALNVLKE 215
>gi|13540964|ref|NP_110652.1| ribonuclease HII [Thermoplasma volcanium GSS1]
Length = 219
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
++ ++ P L+ M +++ LN+I + + L+++ I VY+D E+
Sbjct: 68 AYSYVVVSPETLNKDMASES---LNKIEENYILELLSKAEGI------VYIDCFDVIEER 118
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
K + + V KADS+YP VS ASIV+KV RDR + ++ AE + FGSG
Sbjct: 119 AEKYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DKIAEK-YGFFGSG 172
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
YP DP T +L S+ R W T
Sbjct: 173 YPSDPRTIDFLRKAMQQGLDLRSVARIHWET 203
>gi|34395818|sp|Q97CG6.2|RNH2_THEVO RecName: Full=Ribonuclease HII; Short=RNase HII
Length = 212
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
++ ++ P L+ M +++ LN+I + + L+++ I VY+D E+
Sbjct: 61 AYSYVVVSPETLNKDMASES---LNKIEENYILELLSKAEGI------VYIDCFDVIEER 111
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
K + + V KADS+YP VS ASIV+KV RDR + ++ AE + FGSG
Sbjct: 112 AEKYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DKIAEK-YGFFGSG 165
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
YP DP T +L S+ R W T
Sbjct: 166 YPSDPRTIDFLRKAMQQGLDLRSVARIHWET 196
>gi|410720630|ref|ZP_11359984.1| RNase HII [Methanobacterium sp. Maddingley MBC34]
gi|410600757|gb|EKQ55282.1| RNase HII [Methanobacterium sp. Maddingley MBC34]
Length = 204
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 32 LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVV 90
L +NLNEI + I R++ T ++D++ E+ ++L ++ V
Sbjct: 75 LRSRDVNLNEIEKIA----INRIIGDANAST-CFIDSMDVKPERLTSELETMHSQLRVVA 129
Query: 91 SKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHK 150
KAD YP+VS ASI+AKV RDR + + + N GSGYP DP+T +L K
Sbjct: 130 EHKADDRYPIVSAASIIAKVERDRAI------QDIRKTYENVGSGYPSDPKTIEFL---K 180
Query: 151 HIIFG--FPSLVRFSWGT 166
+ G P VR SW T
Sbjct: 181 TMPPGEELPDFVRSSWAT 198
>gi|254167831|ref|ZP_04874680.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|289596631|ref|YP_003483327.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|197623122|gb|EDY35688.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|289534418|gb|ADD08765.1| ribonuclease HII [Aciduliprofundum boonei T469]
Length = 212
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLS 80
I+P E+ A + K+ LNEI + L RV++ + +VY+D + +++ ++
Sbjct: 64 IEPEEIDA---LREKMTLNEIE----VELFARVIS-QLNGDKVYVDAADVNEDRFAEEIK 115
Query: 81 QRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 139
++ ++ + KADS YP+VS ASI+AKV RDR + + +E E FGSGYP D
Sbjct: 116 KKLGKDVEIISEHKADSKYPMVSAASIIAKVERDRII-NELKKELGE-----FGSGYPAD 169
Query: 140 PETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 172
TK +L + P R SW + K
Sbjct: 170 ERTKRFLEKYVKEHNELPPHTRHSWKSAKRAMK 202
>gi|315230435|ref|YP_004070871.1| ribonuclease HII [Thermococcus barophilus MP]
gi|315183463|gb|ADT83648.1| ribonuclease HII [Thermococcus barophilus MP]
Length = 227
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 3 SEAALPKWASNPFGWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IG 58
S+ P+ F ++++D ELS + +++ + +NE ++ + RVLN +
Sbjct: 44 SKKLTPRRREKLFNEIIELLDDYAIIELSPEQIDEREGTMNEFEIENFV----RVLNSLK 99
Query: 59 ILLTEVYLDTVGDAEKYQAKLSQR---FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 115
+ +Y+D EK ++ + F S K + KAD+ Y VS ASI+AKVTRD+
Sbjct: 100 VKPDVLYIDAADIKEKRFGEIIGKGLNF-SPKIIAEHKADAKYLPVSAASILAKVTRDKA 158
Query: 116 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+ E + + GSGYP DP T+ +L ++ FP +VR SW T
Sbjct: 159 I------EKLKKQYGEIGSGYPSDPRTRKFLEEYYKEHGEFPPIVRKSWKTL 204
>gi|88602504|ref|YP_502682.1| ribonuclease HII [Methanospirillum hungatei JF-1]
gi|115305550|sp|Q2FP80.1|RNH2_METHJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|88187966|gb|ABD40963.1| RNase HII [Methanospirillum hungatei JF-1]
Length = 212
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 34 KNKINLNEI---SHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQ-RFPSIKF 88
+ + +NEI SH A+ I + T Y+D E+Y+ +S P
Sbjct: 73 RRTMTMNEIVARSHAEAL--------IPLNCTCAYVDACDVSEERYEETVSSFSPPDCTI 124
Query: 89 VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTD 148
V KADSL+P VS ASI+AKV RDR I EE ++ + + GSGYP DP T +LT
Sbjct: 125 VARHKADSLFPPVSAASIIAKVERDR-----IIEELSKE-YGDIGSGYPSDPVTITYLTK 178
Query: 149 HKHIIFGFPSLVRFSWGT 166
+ P + R SW T
Sbjct: 179 YIRHHNQPPVIARSSWET 196
>gi|296241926|ref|YP_003649413.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
gi|296094510|gb|ADG90461.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
Length = 248
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 19/152 (12%)
Query: 19 VDIIDPRELSAKMLNKNKINLNEISHDSAIGLI----TRVLNIGILLTEVYLDTVGDAEK 74
+D + P+E+ ++ NLN ++ S + +I T + + L EVY+D V +K
Sbjct: 68 LDYLSPKEI-------DRENLNMLTAGSIVRIIQFFNTLLSSYDERLVEVYIDEVKGVKK 120
Query: 75 YQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
K + K V +ADS YP+VS ASI+AKV+RD ++ + ++H +F
Sbjct: 121 VVEKECSKLFGKRCKLVFESQADSKYPIVSLASIIAKVSRDLSI------SSNTSVHGDF 174
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 164
GSGYP DP WL + + P +VR SW
Sbjct: 175 GSGYPSDPRAVLWLERVYNSLEHPPPIVRKSW 206
>gi|21228916|ref|NP_634838.1| ribonuclease HII [Methanosarcina mazei Go1]
gi|34395785|sp|Q8PTA3.1|RNH2_METMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|20907449|gb|AAM32510.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 220
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPS--------IKFVVSKKADSLYPVVSGASIVAKVTRDR 114
VY D AE++ L +++ IK V +AD++YPVVS ASI+AKV RD
Sbjct: 102 VYADAADVKAERFAENLLRQYAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDE 161
Query: 115 TLRGWIFEETAENMHRNFGSGYPGDPETKAWLTD-HKHIIFGFPSLVRFSWGT 166
+ EE +FGSGYP DP+T+ +L K FP +VR SW T
Sbjct: 162 -----LIEELKREWCIDFGSGYPSDPKTRGFLLKWGKEHGGDFPDIVRQSWQT 209
>gi|73670221|ref|YP_306236.1| ribonuclease HII [Methanosarcina barkeri str. Fusaro]
gi|97182902|sp|Q468N6.1|RNH2_METBF RecName: Full=Ribonuclease HII; Short=RNase HII
gi|72397383|gb|AAZ71656.1| RNase HII [Methanosarcina barkeri str. Fusaro]
Length = 224
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 86 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 145
I+ + +AD+ YPVVS ASI+AKV RD + EE + +FGSGYP DP+TK +
Sbjct: 133 IEIISMHQADATYPVVSAASIIAKVRRDE-----LIEELKKEWGLDFGSGYPSDPKTKEF 187
Query: 146 LTD-HKHIIFGFPSLVRFSWGTC 167
L + K FP +VR SW T
Sbjct: 188 LLNWGKEHSGEFPEIVRQSWQTV 210
>gi|375082469|ref|ZP_09729526.1| ribonuclease HII [Thermococcus litoralis DSM 5473]
gi|374742808|gb|EHR79189.1| ribonuclease HII [Thermococcus litoralis DSM 5473]
Length = 224
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 3 SEAALPKWASNPFGWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IG 58
S+ PK F V I+D +LS + ++ +NE+ ++ + LN +
Sbjct: 41 SKKLTPKRREELFEEIVQIVDDHVIIQLSPEEIDGRDGTMNELEIEN----FAKALNSLK 96
Query: 59 ILLTEVYLDTVGDAEK-YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 116
+ +Y+D EK + + +R S K + KADS Y V+ ASI+AKVTRDR +
Sbjct: 97 VKPDVLYIDAADVKEKRFGDIIGERLSFSPKIIAEHKADSKYIPVAAASILAKVTRDRAI 156
Query: 117 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
E + ++ GSGYP DP T+ +L ++ FP +VR SW T
Sbjct: 157 ------EKLKELYGEIGSGYPSDPITRRFLEEYYKAHGEFPPIVRKSWKTL 201
>gi|344210764|ref|YP_004795084.1| RNAase HII [Haloarcula hispanica ATCC 33960]
gi|343782119|gb|AEM56096.1| RNAase HII [Haloarcula hispanica ATCC 33960]
Length = 211
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 19 VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAK 78
D + E+ + ++ ++ ++N ++ D ++ V G+ T DT DA ++ +
Sbjct: 55 ADAVGVAEIPVERIDADRTDMNTLTVDGQAEALSAVARDGLSGTVDAGDT--DAARFGRR 112
Query: 79 LSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 137
++ + + AD P+V ASIVAKV RD + E + + GSGYP
Sbjct: 113 VADAVDTDVAVTAEHGADETDPLVGAASIVAKVARDAHVADLAEE------YGDVGSGYP 166
Query: 138 GDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
DP T+A+L D+ P+ R SW TC
Sbjct: 167 SDPTTRAFLADYVDRHGELPACARRSWSTC 196
>gi|298674468|ref|YP_003726218.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
gi|298287456|gb|ADI73422.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
Length = 218
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 19/143 (13%)
Query: 34 KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFP-------- 84
+N +++N+I +G V N+ L VY+D+ E++ K+ +
Sbjct: 77 RNVMSMNDIM---VLGFSRVVENLNPEL--VYVDSADVKPERFAEKIRSEYSKSNKTASE 131
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
+IK + +AD +Y VVS ASI+AKV RD + E +FGSGYP DP+TK
Sbjct: 132 NIKIISEHEADVVYSVVSAASIIAKVRRDELVNNL-----KEEFGVDFGSGYPSDPKTKQ 186
Query: 145 WLTDHKHIIFGFPSLVRFSWGTC 167
+L D P +VR SW T
Sbjct: 187 FLLDWVKRYGSLPDIVRHSWKTA 209
>gi|84490178|ref|YP_448410.1| ribonuclease HII [Methanosphaera stadtmanae DSM 3091]
gi|115305551|sp|Q2NEI6.1|RNH2_METST RecName: Full=Ribonuclease HII; Short=RNase HII
gi|84373497|gb|ABC57767.1| RnhB [Methanosphaera stadtmanae DSM 3091]
Length = 212
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 35 NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE-KYQAKLSQRFPSIKFVVSKK 93
N INLNEI + + I +++ Y+D + E ++ K+ + P++ V K
Sbjct: 84 NDINLNEIETE-GMEEIIKIMK----PNACYIDCIDVRENRFHDKIQKINPNMTVVTEHK 138
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
AD Y +VS ASI+AKV RD+ L E + + GSGYP D T +L K+
Sbjct: 139 ADETYKIVSAASIIAKVERDKQL------EIIRQEYGSVGSGYPSDKNTINYLKTIKN-- 190
Query: 154 FGFPSLVRFSWGT 166
FP ++R +W T
Sbjct: 191 NQFPPIIRKTWKT 203
>gi|312137140|ref|YP_004004477.1| rnase hii [Methanothermus fervidus DSM 2088]
gi|311224859|gb|ADP77715.1| RNase HII [Methanothermus fervidus DSM 2088]
Length = 200
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 37 INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADS 96
I+LNEI A+ I + N +V +D++ K K Q+ +I+ +V KAD
Sbjct: 78 ISLNEIER-IAMSKIIKNAN----PKKVIVDSIDIKPKRLKKKLQK-ENIEVIVEHKADE 131
Query: 97 LYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF 156
YPVVS ASIVAKV RD + E+ + + + GSGYP DP+T +L K
Sbjct: 132 KYPVVSAASIVAKVERDSEI-----EKLKKRYNCDLGSGYPNDPKTIKFLKKFKR--SEL 184
Query: 157 PSLVRFSWGT 166
P VR +W T
Sbjct: 185 PDFVRKTWNT 194
>gi|284161145|ref|YP_003399768.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
gi|284011142|gb|ADB57095.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
Length = 211
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 29/164 (17%)
Query: 26 ELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQR 82
++S + LN+ +++NEI + + +I ++ VY+D + E+++ ++ +R
Sbjct: 65 KISVEDLNRLMEYMSINEILKRAYVEIIR-----SLMPKVVYIDCPDINVERFKHEIEER 119
Query: 83 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-ETAENMHRNFGSGYPGDPE 141
++ S KAD +YP+VS ASIVAKV RD FE + + ++ +FGSGYP D
Sbjct: 120 -TGVEVFASHKADEIYPIVSIASIVAKVERD-------FEIDKLKKIYGDFGSGYPSDLR 171
Query: 142 T----KAWLTDHKHIIFGFPSLVRFSWGT---CTSH-FKDIVEV 177
T +++L +HK FP +VR W T T+H D EV
Sbjct: 172 TIEFLRSYLREHK----SFPPIVRKRWKTLKRLTTHTLSDFFEV 211
>gi|91772495|ref|YP_565187.1| ribonuclease HII [Methanococcoides burtonii DSM 6242]
gi|121691891|sp|Q12YN9.1|RNH2_METBU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|91711510|gb|ABE51437.1| Ribonuclease HII [Methanococcoides burtonii DSM 6242]
Length = 213
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 89 VVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT 147
V+SK AD L+PVVS ASI+AKV RD + E+ +M + GSGYP DP+TK +L
Sbjct: 134 VISKHGADDLFPVVSAASILAKVRRDE-----LIEKIKVDMGVDIGSGYPSDPKTKKFLE 188
Query: 148 DHKHIIFGFPSLVRFSWGTC 167
+ FP +VR SW T
Sbjct: 189 NWYRENSSFPDIVRHSWKTA 208
>gi|433637107|ref|YP_007282867.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Halovivax
ruber XH-70]
gi|433288911|gb|AGB14734.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Halovivax
ruber XH-70]
Length = 232
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 71 DAEKYQAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
DA+++ +++ P I AD+ P+V ASIVAKV RD + I A+ +
Sbjct: 118 DADRFARRVTDACSPPIDVAAKHGADADDPLVGAASIVAKVERDARM-ADIAATYADAGY 176
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
+ GSGYP DP+T+A+L H P R SW TC D
Sbjct: 177 GDPGSGYPSDPKTRAFLEAHVDETGRLPDCARRSWATCRDVLAD 220
>gi|219851606|ref|YP_002466038.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
gi|219545865|gb|ACL16315.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
Length = 219
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 62 TEVYLDTVG-DAEKYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 117
T Y+D +A++Y+ ++ S + + +ADS YP+V+ ASI+AKVTRDR L
Sbjct: 100 TLAYVDACDVNADRYRETVTALLEPAASCQVIAEHRADSTYPIVAAASIIAKVTRDR-LV 158
Query: 118 GWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 171
+ +E + GSGYP D T A+L+D+ P+ R SW T T H
Sbjct: 159 DALADECGQ-----IGSGYPSDRYTIAYLSDYIRRHHAPPACARKSWKT-TIHL 206
>gi|448668246|ref|ZP_21686377.1| ribonuclease HII [Haloarcula amylolytica JCM 13557]
gi|445768328|gb|EMA19413.1| ribonuclease HII [Haloarcula amylolytica JCM 13557]
Length = 211
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 20 DIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKL 79
D + E+ + ++ + ++N ++ D+ ++ V G+ T DT DA ++ ++
Sbjct: 56 DAVGVAEIPVERIDADGTDMNTLTVDAQAEALSVVARDGLPGTVDAGDT--DAARFGRRV 113
Query: 80 SQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 138
+ + + AD P+V ASI+AKV RD + E + + GSGYP
Sbjct: 114 ADAVNADVTVTAEHGADETDPLVGAASIIAKVARDEHVAALAEE------YGDVGSGYPS 167
Query: 139 DPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
DP T+A+L D+ P+ R SW TC
Sbjct: 168 DPTTRAFLADYVDRHGELPACARRSWSTC 196
>gi|294495980|ref|YP_003542473.1| RNase HII [Methanohalophilus mahii DSM 5219]
gi|292666979|gb|ADE36828.1| RNase HII [Methanohalophilus mahii DSM 5219]
Length = 215
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 65 YLDTVG-DAEKYQAKL-------SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 116
Y+D +AE++ KL +R + + AD +YP+VS ASI+AKV RD +
Sbjct: 103 YVDAADVNAERFGKKLLAAFEKKHEREKKPEIISEHGADDIYPIVSAASIIAKVRRDELI 162
Query: 117 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 168
G I +TA ++ +FGSGYP DP+TK +L + P VR SW T
Sbjct: 163 -GNI--KTA--INEDFGSGYPSDPKTKKFLQEWMDKNGNLPDFVRHSWKTAA 209
>gi|383318933|ref|YP_005379774.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanocella
conradii HZ254]
gi|379320303|gb|AFC99255.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanocella
conradii HZ254]
Length = 217
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 16/159 (10%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVG-DAEKYQAK 78
++ P E+ A+M + +N E+ + + I L +V YLD +AE++
Sbjct: 65 VVSPEEIDARMAGGSTLNGIEVECFAKV--------IEALRPKVAYLDACDVNAERFGLN 116
Query: 79 LSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 137
+ +R ++ V AD YP+VS ASI+AKV RD + ++ +E + + GSGYP
Sbjct: 117 VRKRLSFEVEVVSRHNADKDYPIVSAASILAKVHRD-----ALVKKISETVGEDVGSGYP 171
Query: 138 GDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
DP T +L + P VR SW T ++ D ++
Sbjct: 172 HDPITIKFLKSYYAKNGEMPPFVRKSWKTTSAVISDCLQ 210
>gi|156938224|ref|YP_001436020.1| RNase HII [Ignicoccus hospitalis KIN4/I]
gi|156567208|gb|ABU82613.1| RNase HII [Ignicoccus hospitalis KIN4/I]
Length = 215
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 15/142 (10%)
Query: 25 RELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFP 84
+E+ A+ ++K NL+E++ + L+ LN + + V +D VG+ K + L + FP
Sbjct: 69 KEVKAEEIDKR--NLSELTIEVMKELLETALN-KVKIDVVCVDIVGNGAKQRRALGEVFP 125
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
+ +V KK D+ P + ASIVAK R+R + + +FGSGYP DP+T
Sbjct: 126 DV--IVMKKGDASCPAAAAASIVAKEARERHV------SQLRARYGDFGSGYPSDPKTLR 177
Query: 145 WLTDHKHIIFGFPSLVRFSWGT 166
WL+ + P +VR W T
Sbjct: 178 WLS----VTRPLPPIVRKKWKT 195
>gi|408381629|ref|ZP_11179177.1| ribonuclease HII [Methanobacterium formicicum DSM 3637]
gi|407815560|gb|EKF86130.1| ribonuclease HII [Methanobacterium formicicum DSM 3637]
Length = 206
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 27 LSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFPS 85
L L +NLNEI AI I N + ++D++ E+ ++L
Sbjct: 70 LDIDTLRSRDVNLNEIEK-IAINQIIGNSN----PSTCFIDSMDVKPERLASELESMHSQ 124
Query: 86 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 145
+ V KAD YP+VS ASIVAKV RDR + + + + GSGYP DP+T +
Sbjct: 125 LNVVSEHKADDHYPIVSAASIVAKVERDRAI------QNIRKTYPDVGSGYPSDPKTIEF 178
Query: 146 L-TDHKHIIFGFPSLVRFSWGTCTSHFK 172
L T + P +R SW T K
Sbjct: 179 LKTLSQETPNELPEFIRRSWATVERILK 206
>gi|448426157|ref|ZP_21583103.1| ribonuclease HII [Halorubrum terrestre JCM 10247]
gi|448508077|ref|ZP_21615311.1| ribonuclease HII [Halorubrum distributum JCM 9100]
gi|448518457|ref|ZP_21617534.1| ribonuclease HII [Halorubrum distributum JCM 10118]
gi|445679648|gb|ELZ32108.1| ribonuclease HII [Halorubrum terrestre JCM 10247]
gi|445697654|gb|ELZ49714.1| ribonuclease HII [Halorubrum distributum JCM 9100]
gi|445705038|gb|ELZ56942.1| ribonuclease HII [Halorubrum distributum JCM 10118]
Length = 243
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 68 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 127
GD E ++ R P++ + AD PVV AS+VAK RD + + A
Sbjct: 132 AAGDDENGASEEGHRLPTVDVTAAHGADEDDPVVGAASVVAKTVRDAAMAEI---DAAYP 188
Query: 128 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+ + GSGYP DP T+++L + P R SW TC
Sbjct: 189 GYDDLGSGYPSDPATRSFLAAYVGDHGTLPDCARASWSTC 228
>gi|374857159|dbj|BAL60012.1| ribonuclease HII [uncultured candidate division OP1 bacterium]
Length = 207
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
S V +AD+ YP+VS ASI+AKV+RDR + E + +FG GYP +P+T+A
Sbjct: 123 SFALVAENRADATYPIVSAASIIAKVSRDRAI------ERLREEYGDFGWGYPSEPKTRA 176
Query: 145 WLTDHKHIIFGFPSLVRFSWGT 166
+L FP R W T
Sbjct: 177 FLKKFYECNGRFPDCARAKWRT 198
>gi|341581295|ref|YP_004761787.1| ribonuclease HII [Thermococcus sp. 4557]
gi|340808953|gb|AEK72110.1| ribonuclease HII [Thermococcus sp. 4557]
Length = 231
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 87 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 146
+ + KAD + VS ASI+AKVTRDR + E + + GSGYP DP T+A+L
Sbjct: 127 EIIAEHKADDKFVPVSAASIIAKVTRDRAI------EKLKEKYGEIGSGYPSDPRTRAFL 180
Query: 147 TDHKHIIFGFPSLVRFSWGTC 167
++ FP +VR SW T
Sbjct: 181 ENYYREHGEFPPIVRRSWKTL 201
>gi|288561094|ref|YP_003424580.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
gi|288543804|gb|ADC47688.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
Length = 219
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 13/148 (8%)
Query: 26 ELSAK---MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQR 82
E+SAK +L +NLN+I + + +I ++ I++ D++ E + Q
Sbjct: 66 EISAKDIDLLRAKGVNLNQIEKLAMMRIIAKLKADTIII-----DSLDIKEGRLEEEMQN 120
Query: 83 F--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN-FGSGYPGD 139
F K + KAD Y VV ASI+AK RD + E +++ GSGYP D
Sbjct: 121 FVGEGSKVIAEHKADDKYIVVGAASIIAKTKRDEIINQINKEYIRSTGNKDGIGSGYPSD 180
Query: 140 PETKAWLTDHKHIIFGFPSLVRFSWGTC 167
P+TK +L ++K+ P VR SWGT
Sbjct: 181 PKTKNFLKNYKY--DEMPDFVRRSWGTV 206
>gi|374629635|ref|ZP_09702020.1| RNase HII [Methanoplanus limicola DSM 2279]
gi|373907748|gb|EHQ35852.1| RNase HII [Methanoplanus limicola DSM 2279]
Length = 212
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 8/107 (7%)
Query: 65 YLDTVGDAE-KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFE 122
Y+D E +Y K++ + V SK KAD++YPVV+ ASIVAKVTRDR ++
Sbjct: 99 YVDACDVNEARYGNKIADLLDNKVTVYSKHKADNIYPVVAAASIVAKVTRDRLIK----- 153
Query: 123 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 169
E +E ++ GSGYP DP T ++L + P + R SW T ++
Sbjct: 154 ELSE-VYGTIGSGYPSDPVTISYLEGYIRENKEAPDIARKSWKTVSN 199
>gi|429216288|ref|YP_007174278.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Caldisphaera
lagunensis DSM 15908]
gi|429132817|gb|AFZ69829.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Caldisphaera
lagunensis DSM 15908]
Length = 228
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 38 NLNEISHDSAIGLITRV-LNIGIL--LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKA 94
N+N + +AI I + IG + + + +D G + +KL Q +V KA
Sbjct: 81 NINTLEEKAAIQNILNLKRQIGNIFEIKSIIIDKFGYLKLMPSKLKQLGFKGDLIVEPKA 140
Query: 95 DSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIF 154
D YPVVS ASI+AKV RDR + E ++ GSGYP DPET ++ +
Sbjct: 141 DVNYPVVSAASIIAKVIRDRRI------EILRKLYGVKGSGYPSDPETIDYV--FSELKK 192
Query: 155 GF-PSLVRFSWGTC 167
G+ P +R+SW T
Sbjct: 193 GYKPLFIRYSWETL 206
>gi|268324099|emb|CBH37687.1| ribonuclease HII [uncultured archaeon]
gi|268326416|emb|CBH40004.1| ribonuclease HII [uncultured archaeon]
Length = 210
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 16/103 (15%)
Query: 73 EKYQAKLS---QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
E++ A L +R ++ + KAD YPVVS ASIVAKV RDR++R E AE
Sbjct: 109 ERFAANLRSNYKRVGELEIISEWKADDHYPVVSAASIVAKVHRDRSIRVLEAEIGAE--- 165
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFG-----FPSLVRFSWGTC 167
GSGYP DP+T +L K ++ G P+ VR SW T
Sbjct: 166 --IGSGYPADPKTIQFL---KGLLKGKELDNIPAYVRRSWKTV 203
>gi|16082425|ref|NP_394911.1| ribonuclease HII [Thermoplasma acidophilum DSM 1728]
gi|11387092|sp|P57673.1|RNH2_THEAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|10640800|emb|CAC12578.1| probable ribonuclease HII [Thermoplasma acidophilum]
Length = 212
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLS 80
I+ P++L+ M ++ LN+I D + L+ ++ VY+D E+ ++
Sbjct: 67 ILHPKDLNRMMAAES---LNKIEEDEIVDLLRYADDL------VYIDCYDVIEERAQEII 117
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
Q + V KAD+++P VS ASIV+KV RD + + + +FGSGYP DP
Sbjct: 118 QMRSGRQVVCKHKADAIFPAVSAASIVSKVIRDAEI------DRLHDRFGDFGSGYPSDP 171
Query: 141 ETKAWLTDHKHIIFGFPSLVRFSWGT 166
T +L + +VR W T
Sbjct: 172 RTIDFLKKYLKENQDPSEIVRIHWST 197
>gi|325960150|ref|YP_004291616.1| ribonuclease Hii [Methanobacterium sp. AL-21]
gi|325331582|gb|ADZ10644.1| ribonuclease HII [Methanobacterium sp. AL-21]
Length = 204
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 71/140 (50%), Gaps = 20/140 (14%)
Query: 31 MLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVG-DAEKYQAKLSQRFPSIKF 88
+L +NLNEI AI I IG ++ Y+D + E++ ++ ++K
Sbjct: 74 LLRSKDVNLNEIEK-IAIKQI-----IGNCDPDISYIDCIDVKPERFTNEIENFQENLKV 127
Query: 89 VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL-- 146
V AD YP+VS ASIVAKV RD+ + + +E E GSGYP DP+T A+L
Sbjct: 128 VAEHGADDTYPIVSAASIVAKVERDQEI-SRLKKEFGE-----IGSGYPSDPKTVAYLKA 181
Query: 147 TDHKHIIFGFPSLVRFSWGT 166
T +K P VR SW T
Sbjct: 182 TPYKE----LPIFVRRSWST 197
>gi|409096060|ref|ZP_11216084.1| ribonuclease HII [Thermococcus zilligii AN1]
Length = 224
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 26 ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEKYQAKLSQRFP 84
ELS + ++ + LNE ++ + LN + + +Y+D E+ + +F
Sbjct: 69 ELSPEEIDSREGTLNEFEVNN----FAKALNSLKVKPDVIYIDAADVREERFGEEIGKFL 124
Query: 85 SIK--FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 142
+ K + KAD +P VS ASI+AKVTRDR + E + GSGYP DP T
Sbjct: 125 NFKAEIIAEHKADDKFPPVSAASILAKVTRDRAI------ERLREEYGEIGSGYPSDPRT 178
Query: 143 KAWLTDHKHIIFGFPSLVRFSWGTC 167
+ +L + FP +VR +W T
Sbjct: 179 REFLMGYYKKHGEFPPVVRRTWETL 203
>gi|330508333|ref|YP_004384761.1| ribonuclease HII [Methanosaeta concilii GP6]
gi|328929141|gb|AEB68943.1| ribonuclease HII [Methanosaeta concilii GP6]
Length = 210
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 71 DAEKY-QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
+AE++ QA + S+ + KAD + VVS ASI+AKV RDR++R E MH
Sbjct: 110 NAERFAQAVRNHSKTSMDLIAEHKADQRHHVVSAASILAKVRRDRSMR-----ELENEMH 164
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GSGYP D +T A+L++ P R SW T
Sbjct: 165 CKIGSGYPHDRDTIAFLSEWVRENKDLPPCARHSWTTA 202
>gi|126466172|ref|YP_001041281.1| RNase HII [Staphylothermus marinus F1]
gi|126014995|gb|ABN70373.1| RNase HII [Staphylothermus marinus F1]
Length = 244
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 64 VYLDTVGDAEKY-QAKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+Y+D + + Y LS+ +I+ +V+ AD YPVVS ASI+AK RD+ +
Sbjct: 111 IYIDEIKGYKNYILTNLSKYINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNI----- 165
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 170
+ + ++ NFGSGYP D T WLT + P ++R +W T +
Sbjct: 166 -DFLKKIYGNFGSGYPSDKITIKWLTKTYNEENEPPLIIRRTWSTLRKY 213
>gi|448376204|ref|ZP_21559488.1| ribonuclease HII [Halovivax asiaticus JCM 14624]
gi|445658222|gb|ELZ11045.1| ribonuclease HII [Halovivax asiaticus JCM 14624]
Length = 235
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 71 DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
DA+++ +++ I AD+ P+V ASIVAKV RD + + E A+ +
Sbjct: 121 DADRFARRVTDACSHPIDVAAEHGADADDPLVGAASIVAKVERDARM-ADVAETYADAGY 179
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
+ GSGYP DP+T+A+L H P R SW TC D
Sbjct: 180 GDPGSGYPSDPKTRAFLEAHVDETGRLPDCARRSWATCRDVLAD 223
>gi|448689619|ref|ZP_21695203.1| ribonuclease HII [Haloarcula japonica DSM 6131]
gi|445777890|gb|EMA28850.1| ribonuclease HII [Haloarcula japonica DSM 6131]
Length = 211
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 18 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 77
+ D + E+ + ++ + ++N ++ D ++ V G+ T DT DA ++
Sbjct: 54 SADAVGVAEIPVERIDADGTDMNTLTVDGQAEALSAVARDGLSGTVDAGDT--DAARFGR 111
Query: 78 KLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 136
+++ + + AD P+V ASI+AKV RD + E AE + + GSGY
Sbjct: 112 RVADAVDADVTVTAEHGADETDPLVGAASIIAKVARDVHVT-----ELAEE-YGDVGSGY 165
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
P DP T+ +L D+ P+ R SW TC
Sbjct: 166 PSDPTTRTFLADYVDSHGELPACARRSWSTC 196
>gi|170289973|ref|YP_001736789.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174053|gb|ACB07106.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
Length = 217
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
S+K + KADS Y V+ ASI+AKV RDR +R E +E GSGYPGDP+T+
Sbjct: 123 SVKIIAENKADSKYIQVASASIIAKVERDRRIR-----ELSELTGVEIGSGYPGDPKTRE 177
Query: 145 WLTDHKHIIFG--FP-SLVRFSWGTCTSHFKDI 174
+ + I+ G FP VR+ W T ++I
Sbjct: 178 AI---RMILKGAEFPRDQVRWKWATINRLLEEI 207
>gi|332797850|ref|YP_004459350.1| ribonuclease HII [Acidianus hospitalis W1]
gi|332695585|gb|AEE95052.1| ribonuclease HII [Acidianus hospitalis W1]
Length = 192
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 11/131 (8%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSL 97
NLNE+++ I +I L + + V +D VG+ + K+ + +K V AD
Sbjct: 60 NLNELTYSKVIQIIYASLPLHPKI--VTIDKVGNEDIVIMKIREL--GLKDNVVFNADVK 115
Query: 98 YPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTD-HKHIIFGF 156
Y S ASI+AKVTRDR + ++ + ++ +FGSGYP DP+T+ W+ + ++
Sbjct: 116 YIEASAASIIAKVTRDRII------DSLKKIYGDFGSGYPSDPKTRKWIIEIYEKDKNNP 169
Query: 157 PSLVRFSWGTC 167
P ++R +W T
Sbjct: 170 PPIIRRTWKTL 180
>gi|148673842|gb|EDL05789.1| mCG129830, isoform CRA_b [Mus musculus]
Length = 142
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 55/134 (41%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI
Sbjct: 62 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLI------------------------ 97
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q L Q VT+ W F E +++ ++GSG
Sbjct: 98 QYALDQN-------------------------VNVTQ------WQFVENLQDLDSDYGSG 126
Query: 136 YPGDPETKAWLTDH 149
YP DP+TKAWL H
Sbjct: 127 YPNDPKTKAWLRKH 140
>gi|154151483|ref|YP_001405101.1| ribonuclease HII [Methanoregula boonei 6A8]
gi|166226624|sp|A7I9P7.1|RNH2_METB6 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|154000035|gb|ABS56458.1| ribonuclease HII [Methanoregula boonei 6A8]
Length = 213
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDH--KH 151
ADS YPVVS ASIVAKVTRDR + + GSGYP DPET A+L + +H
Sbjct: 130 ADSTYPVVSAASIVAKVTRDREIAKL------AKKYGQIGSGYPSDPETIAYLNAYIDEH 183
Query: 152 IIFGFPSLVRFSWGTCTS 169
I P + R SW T ++
Sbjct: 184 RI--PPPIARKSWKTVST 199
>gi|390962065|ref|YP_006425899.1| ribonuclease HII [Thermococcus sp. CL1]
gi|390520373|gb|AFL96105.1| ribonuclease HII [Thermococcus sp. CL1]
Length = 232
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 87 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 146
+ + KAD + VS ASI+AKVTRDR + E + + GSGYP DP T+A+L
Sbjct: 129 EIIAEHKADDKFVPVSAASILAKVTRDRAI------EKLKEEYGEIGSGYPSDPRTRAFL 182
Query: 147 TDHKHIIFGFPSLVRFSWGTC 167
++ FP +VR SW T
Sbjct: 183 ENYYREHGTFPPIVRRSWKTL 203
>gi|448484903|ref|ZP_21606304.1| ribonuclease HII [Halorubrum arcis JCM 13916]
gi|445819336|gb|EMA69180.1| ribonuclease HII [Halorubrum arcis JCM 13916]
Length = 243
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 68 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 127
GD E ++ P++ + AD PVV AS+VAK RD + + A
Sbjct: 132 AAGDDENGASEEGHHLPTVDVTAAHGADEDDPVVGAASVVAKTVRDAAMAEI---DAAYP 188
Query: 128 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+ + GSGYP DP T+++L + P R SW TC
Sbjct: 189 GYDDLGSGYPSDPATRSFLAAYVGDHGTLPDCARASWSTC 228
>gi|448452543|ref|ZP_21593405.1| ribonuclease HII [Halorubrum litoreum JCM 13561]
gi|445808742|gb|EMA58800.1| ribonuclease HII [Halorubrum litoreum JCM 13561]
Length = 243
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 68 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 127
GD E ++ P++ + AD PVV AS+VAK RD + + A
Sbjct: 132 AAGDDENGASEEGDHLPTVDVTAAHGADEDDPVVGAASVVAKTVRDAAMAEI---DAAYP 188
Query: 128 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+ + GSGYP DP T+++L + P R SW TC
Sbjct: 189 GYDDLGSGYPSDPATRSFLAAYVGDHGTLPDCARASWSTC 228
>gi|257076035|ref|ZP_05570396.1| ribonuclease HII [Ferroplasma acidarmanus fer1]
Length = 205
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 62 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+ VY+D+ E L + V KAD +YP VS ASI+AKV RDR +
Sbjct: 96 STVYVDSFDVNELRLQSLLMENTKRQIVCRHKADEIYPCVSAASIIAKVIRDREI----- 150
Query: 122 EETAENMHR---NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 169
+ +H+ +FGSGYP DP T ++ + S+VR W T S
Sbjct: 151 ----DKLHKDYGDFGSGYPSDPRTINFVKNALKNGINIDSIVRHQWKTYKS 197
>gi|227826588|ref|YP_002828367.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
gi|227829230|ref|YP_002831009.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
gi|229577999|ref|YP_002836397.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
gi|229583752|ref|YP_002842253.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
gi|238618674|ref|YP_002913499.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
gi|284996585|ref|YP_003418352.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385772204|ref|YP_005644770.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
gi|385774919|ref|YP_005647487.1| ribonuclease HII [Sulfolobus islandicus REY15A]
gi|227455677|gb|ACP34364.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
gi|227458383|gb|ACP37069.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
gi|228008713|gb|ACP44475.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
gi|228018801|gb|ACP54208.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
gi|238379743|gb|ACR40831.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
gi|284444480|gb|ADB85982.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5]
gi|323473667|gb|ADX84273.1| ribonuclease HII [Sulfolobus islandicus REY15A]
gi|323476318|gb|ADX81556.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
Length = 212
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTE-VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADS 96
NLN++++D+ +I L++ + E V +D VG+ EK +L ++ K V KAD
Sbjct: 76 NLNDLTYDAVSKII---LSLSVFNPEIVTVDKVGE-EKPVIELIRKL-GYKSNVVHKADV 130
Query: 97 LYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF 156
L+ S ASI+AKV RD + + + ++ +FGSGYP DP T WL
Sbjct: 131 LFVEASAASIIAKVIRDNYI------DELKKVYGDFGSGYPADPRTIKWLKSFYEKNPNP 184
Query: 157 PSLVRFSWGTCTS 169
P +VR SW S
Sbjct: 185 PPIVRRSWKILRS 197
>gi|389860356|ref|YP_006362595.1| ribonuclease HII [Thermogladius cellulolyticus 1633]
gi|388525259|gb|AFK50457.1| ribonuclease HII [Thermogladius cellulolyticus 1633]
Length = 231
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 38 NLNEISHDSA--IGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPS---IKFVVSK 92
NLN + ++A + L+ R L E+Y+D + AE + S + FV+
Sbjct: 80 NLNTATLEAAKRVLLLVRELAWRGGEVEIYVDEIKGAESKLRRFSMELYGDKLVVFVMEP 139
Query: 93 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHI 152
+ADS YP VS ASI+AK RD ++ + + ++GSGY DP+T W+T++
Sbjct: 140 EADSKYPAVSLASIIAKTLRDESI------QPGRVLFGDYGSGYSADPKTVKWVTEYSK- 192
Query: 153 IFGFPSLVRFSW 164
+ P +VR W
Sbjct: 193 VSPPPLIVRRKW 204
>gi|448500118|ref|ZP_21611597.1| ribonuclease HII [Halorubrum coriense DSM 10284]
gi|445696840|gb|ELZ48919.1| ribonuclease HII [Halorubrum coriense DSM 10284]
Length = 235
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
++ + + P++ + AD PVV AS+VAKV RD + A +
Sbjct: 130 DEAEPRADGALPAVDVTAAHGADEDDPVVGAASVVAKVVRDAAMTDL----DAARPEYDL 185
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GSGYP DP T+A+L + P R SW TC
Sbjct: 186 GSGYPSDPTTRAFLAAYVGDHGTLPDCARASWSTC 220
>gi|448679235|ref|ZP_21690072.1| ribonuclease HII [Haloarcula argentinensis DSM 12282]
gi|445771333|gb|EMA22390.1| ribonuclease HII [Haloarcula argentinensis DSM 12282]
Length = 211
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 20 DIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKL 79
D + E+ + ++ ++ ++N ++ D+ ++ V + T DT DA ++ ++
Sbjct: 56 DAVGVAEVPVERIDADETDMNTLTVDAQATALSTVARDNLSGTVDAGDT--DATRFGRRV 113
Query: 80 SQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 138
+ + + AD VV ASI+AKV RD + E + + GSGYP
Sbjct: 114 ADAVDADVTVTAEHGADETDTVVGAASIIAKVARDAHVAELAVE------YGDVGSGYPS 167
Query: 139 DPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
DP T+A+L D+ P+ R SW TC
Sbjct: 168 DPTTRAFLADYVDRHGELPACARRSWSTC 196
>gi|229583211|ref|YP_002841610.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
gi|228013927|gb|ACP49688.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
Length = 212
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTE-VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADS 96
NLN++++D+ +I L++ + E V +D VG+ EK +L ++ K V KAD
Sbjct: 76 NLNDLTYDAVSKII---LSLSVFNPEIVTVDKVGE-EKPVIELIRKL-GYKSNVVHKADV 130
Query: 97 LYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF 156
L+ S ASI+AKV RD + + + ++ +FGSGYP DP T WL
Sbjct: 131 LFVEASAASIIAKVIRDNYI------DELKKVYGDFGSGYPADPRTIKWLKSFYEKNPNP 184
Query: 157 PSLVRFSWGTCTS 169
P +VR SW S
Sbjct: 185 PPIVRRSWKILRS 197
>gi|448458612|ref|ZP_21596278.1| ribonuclease HII [Halorubrum lipolyticum DSM 21995]
gi|445809124|gb|EMA59171.1| ribonuclease HII [Halorubrum lipolyticum DSM 21995]
Length = 234
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
A P++ + AD PVV AS+VAKV RD + E A + GSG
Sbjct: 131 SATTDTDLPAVDVSAAHGADEDDPVVGAASVVAKVARDERMAAVDAEYAA---YDGVGSG 187
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
YP DP T+++L H P R SW TC
Sbjct: 188 YPSDPTTRSFLRAHVDDHGEVPDCARRSWATC 219
>gi|55379775|ref|YP_137625.1| ribonuclease HII [Haloarcula marismortui ATCC 43049]
gi|74516083|sp|Q5UXT4.1|RNH2_HALMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|55232500|gb|AAV47919.1| RNAase HII [Haloarcula marismortui ATCC 43049]
Length = 211
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 18 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 77
+ D + E+S + ++ ++ ++N ++ + ++ V G+ T DT DA ++
Sbjct: 54 SADAVGIAEISVERIDADETDMNTLTVEGQAEALSAVARDGLSGTVDAGDT--DAARFGR 111
Query: 78 KLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 136
+++ + + AD +V ASI+AKV RD + E AE + + GSGY
Sbjct: 112 RVADAVDTDVAVTAEHGADETDSLVGAASIIAKVARDT----HVAELAAE--YGDVGSGY 165
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
P DP T+ +L D+ P+ R SW TC
Sbjct: 166 PSDPTTRTFLADYVDRHGELPACARRSWSTC 196
>gi|119719808|ref|YP_920303.1| ribonuclease HII [Thermofilum pendens Hrk 5]
gi|189043673|sp|A1RYM0.1|RNH2_THEPD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119524928|gb|ABL78300.1| RNase HII [Thermofilum pendens Hrk 5]
Length = 213
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 23/157 (14%)
Query: 19 VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA-----E 73
V +++P+E+ + + NLN + LI VL+ G L VY+D+ E
Sbjct: 66 VRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEV-VYMDSPDPVPSRFEE 124
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ +A L + ++ V AD Y +V ASIVAK TRD + + + +FG
Sbjct: 125 RVRALLKGQ---VRIVAENGADEKYTIVGAASIVAKETRDEIINAL------KKTYGDFG 175
Query: 134 SGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGT 166
SGYP DP T + W+ H P + R W T
Sbjct: 176 SGYPSDPRTLRFAEEWVRKHGE----PPPIARKEWAT 208
>gi|395646404|ref|ZP_10434264.1| ribonuclease HII [Methanofollis liminatans DSM 4140]
gi|395443144|gb|EJG07901.1| ribonuclease HII [Methanofollis liminatans DSM 4140]
Length = 212
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 26 ELSAKMLN--KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQR 82
E+SA ++ + ++++N I + G+I + Y+D + E+Y A ++
Sbjct: 62 EVSAAEIDHLREEMSMNTIVARAHAGVIA-----ALAPQTAYVDACDVNEERYAATVTAL 116
Query: 83 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 142
+ AD+L+PVVS ASIVAKV+RDR I E + GSGYP D T
Sbjct: 117 GSPCPVIARHHADALFPVVSAASIVAKVSRDRR----IIE--LQEAFGAIGSGYPSDTVT 170
Query: 143 KAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
A+L + P R SW T KD
Sbjct: 171 IAYLREQIRADGVPPVFARRSWKTVEEMMKD 201
>gi|448534698|ref|ZP_21621856.1| ribonuclease HII [Halorubrum hochstenium ATCC 700873]
gi|445704309|gb|ELZ56226.1| ribonuclease HII [Halorubrum hochstenium ATCC 700873]
Length = 236
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
+A+ P++ + AD+ P+V AS+VAKVTRD + + A + + GSG
Sbjct: 133 RAEGGDPVPAVDVTAAHGADADDPLVGAASVVAKVTRDAAM---ATVDAAYPEYDDVGSG 189
Query: 136 YPGDPETK----AWLTDHKHIIFGFPSLVRFSWGTC 167
YP DP T+ A++ DH + P R SW TC
Sbjct: 190 YPSDPATRSFIAAYVGDHGRL----PDCARESWATC 221
>gi|11498229|ref|NP_069455.1| ribonuclease HII [Archaeoglobus fulgidus DSM 4304]
gi|7388077|sp|O29634.1|RNH2_ARCFU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|2650000|gb|AAB90620.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304]
Length = 205
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 25/153 (16%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVGDAEKYQAKLS 80
+ P L +M K +NEI + +I R L E+ Y+D+ + ++
Sbjct: 64 VSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERLSREL 114
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
+ ++ V KAD YP+V+ ASI+AKV R+R + E + +FGSGY DP
Sbjct: 115 EEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ERLKEKFGDFGSGYASDP 168
Query: 141 ET----KAWLTDHKHIIFGFPSLVRFSWGTCTS 169
T K W+ + PS VR W T ++
Sbjct: 169 RTREVLKEWIASGR-----IPSCVRMRWKTVSN 196
>gi|320100359|ref|YP_004175951.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
gi|319752711|gb|ADV64469.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
Length = 255
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 64 VYLDTVGDAEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+Y+D V + + + R ++ V+ +AD+ YP VS AS++AKV RDR +
Sbjct: 114 IYVDEVKGYGESVRECAMRIYGEHVEVVMEPEADARYPAVSAASVIAKVIRDRNI----- 168
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF----PSLVRFSWGTC 167
+ + GSGYP DP ++AWL I+G P +R SWG
Sbjct: 169 -DVLGKITGGLGSGYPSDPASRAWLA----TIYGRWDKPPVFIRRSWGIV 213
>gi|223476982|ref|YP_002581715.1| Ribonuclease HII [Thermococcus sp. AM4]
gi|214032208|gb|EEB73038.1| Ribonuclease HII [Thermococcus sp. AM4]
Length = 230
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 26 ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEKYQAKLSQRFP 84
EL + ++ K+ LNE ++ + LN + + VY+D E + R
Sbjct: 71 ELWPEEIDSRKVTLNEFEVEN----FAKALNSLKVRPDVVYIDAADVKEGRFGEAVGRLL 126
Query: 85 SIK--FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 142
S K V +AD + VS ASI+AKV RDR + E + + GSGYP DP T
Sbjct: 127 SFKAEIVAEHRADDKFVPVSAASILAKVVRDRAI------ERLKREYGEIGSGYPSDPRT 180
Query: 143 KAWLTDHKHIIFGFPSLVRFSWGTC 167
+ +L + FP +VR +W T
Sbjct: 181 REFLEKYYREHGDFPPIVRKTWKTV 205
>gi|397780747|ref|YP_006545220.1| ribonuclease HII [Methanoculleus bourgensis MS2]
gi|396939249|emb|CCJ36504.1| ribonuclease HII [Methanoculleus bourgensis MS2]
Length = 216
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 57 IGILLTEVYLDTVG-DAEKYQAKLSQR--FPSIKFVVSKKADSLYPVVSGASIVAKVTRD 113
+G+ Y+D +AE+Y ++ FP + +AD+ Y +V AS+VAKVTRD
Sbjct: 98 MGLRPESAYVDACDVNAERYGRTVTDYLDFPC-DIISEHRADARYKIVGAASVVAKVTRD 156
Query: 114 RTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 169
R ++ + + N GSGYP DP T +L + P R SW T T+
Sbjct: 157 RAIKDL------DEQYGNIGSGYPSDPVTIEFLRGYVRDYGNPPPCARRSWKTVTN 206
>gi|14278646|pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus
gi|14278647|pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt
Hexammine Chloride
Length = 225
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 25/153 (16%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVGDAEKYQAKLS 80
+ P L +M K +NEI + +I R L E+ Y+D+ + ++
Sbjct: 84 VSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERLSREL 134
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
+ ++ V KAD YP+V+ ASI+AKV R+R + E + +FGSGY DP
Sbjct: 135 EEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ERLKEKFGDFGSGYASDP 188
Query: 141 ET----KAWLTDHKHIIFGFPSLVRFSWGTCTS 169
T K W+ + PS VR W T ++
Sbjct: 189 RTREVLKEWIASGR-----IPSCVRMRWKTVSN 216
>gi|255513539|gb|EET89805.1| ribonuclease HII [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 212
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 83/180 (46%), Gaps = 45/180 (25%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVL-NIGILLTEVYLDTVGDAEK 74
AVD I P E++ M NKI+LNE+ L ++ +IG VYLD+ +
Sbjct: 41 AIAVDKITPAEINQAM--SNKISLNELEAIRFAKLFDQLKEDIGT----VYLDS---PDV 91
Query: 75 YQAKLSQRFP------------------SIKF--VVSK-KADSLYPVVSGASIVAKVTRD 113
Q K RF IKF V+S+ KADS YPVVS ASI+AKV RD
Sbjct: 92 IQEKFGIRFKMSSGKPLKVIGLKQKAQKGIKFTKVISEHKADSKYPVVSAASIIAKVVRD 151
Query: 114 RTLRGWIFEETAENMHRNFGSGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGTCTS 169
R ++ + +++ GSGYP D +T + LT+ S VR W T S
Sbjct: 152 REVK-----KIEKSLRIRIGSGYPSDSKTIDAVRGNLTNS-----ALLSHVREHWSTMRS 201
>gi|124486303|ref|YP_001030919.1| ribonuclease HII [Methanocorpusculum labreanum Z]
gi|189043623|sp|A2STJ6.1|RNH2_METLZ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|124363844|gb|ABN07652.1| RNase HII [Methanocorpusculum labreanum Z]
Length = 212
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 121
VYLD +A+++ + + S V S+ KAD+ Y VV ASIVAKVTRDR + +
Sbjct: 97 VYLDACDVNAKRFGENVLRLSGSSAHVCSEHKADAKYAVVGAASIVAKVTRDRCIAD-LK 155
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
EE E GSGYP DP T ++LT++ P R SW T
Sbjct: 156 EEYGE-----IGSGYPSDPATISFLTEYIRTRGEVPLCARRSWQT 195
>gi|15899137|ref|NP_343742.1| ribonuclease HII [Sulfolobus solfataricus P2]
gi|284173748|ref|ZP_06387717.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
gi|384432732|ref|YP_005642090.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
gi|74539626|sp|Q97W56.1|RNH2_SULSO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|13815686|gb|AAK42532.1| Ribonuclease HII (rnhB) [Sulfolobus solfataricus P2]
gi|261600886|gb|ACX90489.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
Length = 212
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSL 97
NLN++++D+ +I + + + V D VGD EK +L + K V KAD L
Sbjct: 76 NLNDLTYDAVSKIILSLSSFNPEIVTV--DKVGD-EKPVIELINKL-GYKSNVVHKADVL 131
Query: 98 YPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP 157
+ S ASI+AKV RD + + + ++ +FGSGYP DP T WL P
Sbjct: 132 FVEASAASIIAKVIRDNYI------DELKQVYGDFGSGYPADPRTIKWLKSFYEKNPNPP 185
Query: 158 SLVRFSWGTCTS 169
++R SW S
Sbjct: 186 PIIRRSWKILRS 197
>gi|321159924|pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
gi|321159925|pdb|3P83|E Chain E, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
gi|321159926|pdb|3P83|F Chain F, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus
Length = 217
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 25/153 (16%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVGDAEKYQAKLS 80
+ P L +M K +NEI + +I R L E+ Y+D+ + ++
Sbjct: 76 VSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERLSREL 126
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
+ ++ V KAD YP+V+ ASI+AKV R+R + E + +FGSGY DP
Sbjct: 127 EEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ERLKEKFGDFGSGYASDP 180
Query: 141 ET----KAWLTDHKHIIFGFPSLVRFSWGTCTS 169
T K W+ + PS VR W T ++
Sbjct: 181 RTREVLKEWIASGR-----IPSCVRMRWKTVSN 208
>gi|448440394|ref|ZP_21588557.1| ribonuclease HII [Halorubrum saccharovorum DSM 1137]
gi|445690290|gb|ELZ42505.1| ribonuclease HII [Halorubrum saccharovorum DSM 1137]
Length = 234
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 83 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 142
P++ + AD PVV AS+VAKV RDR + + A + GSGYP DP T
Sbjct: 138 LPTVDVSAAHGADEDDPVVGAASVVAKVARDRRMADIDADYPA---YDGLGSGYPSDPTT 194
Query: 143 ----KAWLTDHKHIIFGFPSLVRFSWGTC 167
+A++ DH + P R +W TC
Sbjct: 195 RDFLRAYVDDHGDV----PDCARRTWATC 219
>gi|70606743|ref|YP_255613.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
gi|449066967|ref|YP_007434049.1| ribonuclease HII [Sulfolobus acidocaldarius N8]
gi|449069239|ref|YP_007436320.1| ribonuclease HII [Sulfolobus acidocaldarius Ron12/I]
gi|109896186|sp|Q4JA60.1|RNH2_SULAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|68567391|gb|AAY80320.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
gi|449035475|gb|AGE70901.1| ribonuclease HII [Sulfolobus acidocaldarius N8]
gi|449037747|gb|AGE73172.1| ribonuclease HII [Sulfolobus acidocaldarius Ron12/I]
Length = 212
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 26/156 (16%)
Query: 15 FGWAVDIID--PRELSAKMLNKNKINLNEISHDSAIGLI--TRVLNIGILLTEVYLDTVG 70
+ +A+ ++ P E+ ++ NLNEI++ + I +I V N I V +D VG
Sbjct: 59 YSYAISLVKAYPEEIDSE-------NLNEITYRAMIQIIHSMSVYNPSI----VTVDKVG 107
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
+A + ++ S + V AD Y VS ASI+AKV RD + + +
Sbjct: 108 NASAVEREIININSSPR--VENNADVKYVEVSAASIIAKVVRDNII------NELKKTYG 159
Query: 131 NFGSGYPGDPETKAWLTD--HKHIIFGFPSLVRFSW 164
+FGSGYPGD +T W+ D + + P ++R SW
Sbjct: 160 DFGSGYPGDKKTVEWIKDLYSRQPTYALP-IIRRSW 194
>gi|297527144|ref|YP_003669168.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
gi|297256060|gb|ADI32269.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
Length = 244
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 64 VYLDTVGDAEKY-QAKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+Y+D + + Y A LS+ +I+ +V+ AD YPVVS ASI+AK RD+ +
Sbjct: 111 IYIDEIKGYKNYILANLSKYINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNI----- 165
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 170
+ + ++ N GSGYP D T WL + P ++R +W T +
Sbjct: 166 -DFLKKIYGNLGSGYPSDRVTINWLIKTYNGEKEPPLIIRRTWSTLRKY 213
>gi|448437393|ref|ZP_21587416.1| ribonuclease HII [Halorubrum tebenquichense DSM 14210]
gi|445681120|gb|ELZ33559.1| ribonuclease HII [Halorubrum tebenquichense DSM 14210]
Length = 238
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 70 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
GD E+ ++ P++ + AD+ P+V AS+VAKVTRD + + A +
Sbjct: 131 GDGERPES--GDPVPAVDVTAAHGADADDPLVGAASVVAKVTRDAEM---ATVDAAYPEY 185
Query: 130 RNFGSGYPGDPETK----AWLTDHKHIIFGFPSLVRFSWGTC 167
GSGYP DP T+ A++ DH + P R SW TC
Sbjct: 186 DGVGSGYPSDPATRSFIAAYVGDHGTL----PDCARESWATC 223
>gi|212223919|ref|YP_002307155.1| ribonuclease HII [Thermococcus onnurineus NA1]
gi|226736826|sp|B6YVT5.1|RNH2_THEON RecName: Full=Ribonuclease HII; Short=RNase HII
gi|212008876|gb|ACJ16258.1| ribonuclease HII [Thermococcus onnurineus NA1]
Length = 227
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 88 FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT 147
+ KAD + VS ASI+AKV RDR + E ++ + GSGYP DP T+ +L
Sbjct: 128 IIAEHKADDKFVPVSAASILAKVARDRAI------EKLKDQYGEIGSGYPSDPRTRTFLE 181
Query: 148 DHKHIIFGFPSLVRFSWGTC 167
++ FP +VR +W T
Sbjct: 182 EYYRKHGEFPPIVRRTWKTL 201
>gi|386002343|ref|YP_005920642.1| Ribonuclease HII [Methanosaeta harundinacea 6Ac]
gi|357210399|gb|AET65019.1| Ribonuclease HII [Methanosaeta harundinacea 6Ac]
Length = 207
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET-- 142
S++ V +AD +PVV+ ASI+AKV RD ++R E + + R GSGYP DP T
Sbjct: 122 SMEVVAEHRADRNHPVVAAASILAKVRRDLSVR-----EIEKAVGREIGSGYPSDPATIR 176
Query: 143 --KAWLTDHKHIIFGFPSLVRFSWGTC 167
++W+ +H + P + R SW T
Sbjct: 177 FLESWVGEHGDL----PPVARQSWKTA 199
>gi|145481239|ref|XP_001426642.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393718|emb|CAK59244.1| unnamed protein product [Paramecium tetraurelia]
Length = 281
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 16/158 (10%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQ 81
I ++LS K+L ++NEIS + + LI +L+ G + E Y++ +G E L +
Sbjct: 94 ISAQKLSTKILAYTPSDVNEISLNYTLQLIKNILSKGYKIIECYINPIGFKENLNEVLKK 153
Query: 82 RF----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN--FGSG 135
+KF+V ++ + A IV+ R+ L + ++++ + GSG
Sbjct: 154 GLGLGNNDLKFIVG-----MHQTIIAAQIVSLQERNTRLL-----QIQQDIYPSGQMGSG 203
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
YP D T+ +L+ +F +P +RF+W T ++ K
Sbjct: 204 YPSDALTREFLSKVSIPVFIYPQDIRFAWQTVSASLKQ 241
>gi|448397461|ref|ZP_21569494.1| ribonuclease HII [Haloterrigena limicola JCM 13563]
gi|445672560|gb|ELZ25131.1| ribonuclease HII [Haloterrigena limicola JCM 13563]
Length = 223
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 71 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
DAE++ ++S + V + AD P+V ASI+AKV RD + E
Sbjct: 116 DAERFARRVSDTCSLERLAVDARHGADDDSPLVGAASIIAKVERDAHIATLAAE------ 169
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+ GSGYPGD T+A+LT + P R SW TC
Sbjct: 170 YGPIGSGYPGDSTTRAFLTSYVDAHGELPPFARESWSTC 208
>gi|448634381|ref|ZP_21674779.1| ribonuclease HII [Haloarcula vallismortis ATCC 29715]
gi|445749354|gb|EMA00799.1| ribonuclease HII [Haloarcula vallismortis ATCC 29715]
Length = 211
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 18 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 77
+ D + E+ + ++ ++ ++N ++ ++ ++ V G+ T DT DAE++
Sbjct: 54 SADAVGVAEIPVERIDDDETDMNTLTVEAQAEALSAVARDGLSGTVDAGDT--DAERFGR 111
Query: 78 KLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 136
+++ + + AD P+V ASI+AK R+ + E AE + + GSGY
Sbjct: 112 RVAGAVDAEVTVTAEHGADETDPLVGAASIIAKEAREAHVA-----ELAEE-YGDVGSGY 165
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
P DP T+++L D P+ R SW TC
Sbjct: 166 PSDPTTRSFLADCVDRHGELPACARRSWSTC 196
>gi|257052068|ref|YP_003129901.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
gi|256690831|gb|ACV11168.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
Length = 234
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 13/144 (9%)
Query: 26 ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD--AEKYQAKLSQRF 83
E+ ++ + ++N ++ + + V + G+ YLD GD A +++ +++ R
Sbjct: 84 EIPVARIDDTETDMNTLTVVAHAEALEPVASDGLA---TYLD-AGDTNAVRFERRVADRI 139
Query: 84 PS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 142
+ + AD+ YP+V ASI+AKV RD + E AE + + GSGYPGD T
Sbjct: 140 EADLDLRAEHGADAAYPIVGAASIIAKVERD----AHVAELAAE--YGDLGSGYPGDSTT 193
Query: 143 KAWLTDHKHIIFGFPSLVRFSWGT 166
+ +L D+ P+ R SW T
Sbjct: 194 RDFLEDYIAEHGELPACARESWQT 217
>gi|15920736|ref|NP_376405.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
gi|74574695|sp|Q974Z3.1|RNH2_SULTO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|342306230|dbj|BAK54319.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
Length = 208
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 17/149 (11%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
G+ + + P E+ ++ NLNE+++ + I +I ++ + + +D VG+ +
Sbjct: 62 GFTIVKVSPEEIDSE-------NLNELTYKAMIKIIYSLVEFKPI--RISIDKVGNTKVV 112
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
+ ++ + V + AD + S ASI+AKV RD + +T ++ + +FGSG
Sbjct: 113 EQEIIKLGMEPNIVTN--ADVYFVEASAASIIAKVIRDNII------DTLKSKYGDFGSG 164
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSW 164
YP DP+T W+ + P ++R SW
Sbjct: 165 YPSDPKTVNWVKNVYKEYLTPPPIIRRSW 193
>gi|448320192|ref|ZP_21509680.1| ribonuclease HII [Natronococcus amylolyticus DSM 10524]
gi|445606598|gb|ELY60502.1| ribonuclease HII [Natronococcus amylolyticus DSM 10524]
Length = 222
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 26 ELSAKMLNKNKINLNEIS---HDSAIGLITRVLNIGILLTEVYL----DTVGDAEKYQAK 78
E++ +++ + ++N ++ H AI + +++ + L DT DA+++ +
Sbjct: 64 EITPSLIDNPETDMNSLAVRAHAEAIEEMLEAVDVSADSSAPGLCDACDT--DADRFARR 121
Query: 79 LSQRF-PSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
++ P + + + AD P+V AS+VAKV RD ++ E + GSG
Sbjct: 122 VADACEPEYELEIEAEHGADDQDPIVGAASVVAKVERDASMAALADE------YGPVGSG 175
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
YP DP T+A+L + P R SW TC D
Sbjct: 176 YPSDPTTRAFLESYVADHDSLPPFARESWSTCADVLAD 213
>gi|448406608|ref|ZP_21573062.1| ribonuclease HII [Halosimplex carlsbadense 2-9-1]
gi|445677179|gb|ELZ29682.1| ribonuclease HII [Halosimplex carlsbadense 2-9-1]
Length = 252
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 84 PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETK 143
P I AD Y VV ASIVAKV RD + E + + GSGYPGD T+
Sbjct: 128 PPIDARAEHGADETYVVVGAASIVAKVARDAHVEALAEE------YGDVGSGYPGDDTTR 181
Query: 144 ----AWLTDHKHIIFGFPSLVRFSWGTCT 168
++ DH+ + P+ R SW TCT
Sbjct: 182 DFLEGYVADHEEL----PACARASWQTCT 206
>gi|333986451|ref|YP_004519058.1| ribonuclease HII [Methanobacterium sp. SWAN-1]
gi|333824595|gb|AEG17257.1| ribonuclease HII [Methanobacterium sp. SWAN-1]
Length = 202
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 19/148 (12%)
Query: 24 PRELSAK---MLNKNKINLNEISHDSAIGLI-TRVLNIGILLTEVYLDTVG-DAEKYQAK 78
P +++A+ +L +NLNEI + +I +I I+ D + ++++A+
Sbjct: 64 PVKITAQDIDLLRSKDVNLNEIEKIAMKKIIGDSEPDISII------DCIDVKPKRFKAE 117
Query: 79 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 138
+ +++ V KAD Y +VS ASIVAKV RD ++ E + GSGYP
Sbjct: 118 IETYKENLEVVAEHKADDKYVIVSAASIVAKVERDSEVQKIRKE------FKEIGSGYPS 171
Query: 139 DPETKAWLTDHKHIIFGFPSLVRFSWGT 166
DP+T A+L + P VR SW T
Sbjct: 172 DPKTIAFLKKTSY--EDLPDFVRKSWAT 197
>gi|126178454|ref|YP_001046419.1| ribonuclease HII [Methanoculleus marisnigri JR1]
gi|125861248|gb|ABN56437.1| RNase HII [Methanoculleus marisnigri JR1]
Length = 205
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 65 YLDTVG-DAEKYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 121
Y+D +AE+Y +++ +P + V AD+ + VV AS+VAKVTRDR +R
Sbjct: 95 YVDACDVNAERYGRTVAELLDYPC-EIVAEHHADARHKVVGAASVVAKVTRDRAIREL-- 151
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 169
E + GSGYP DP T +L + P+ R SW T T+
Sbjct: 152 ----EQQYGAIGSGYPSDPATIEFLRGYIRSHGSPPACARRSWKTVTN 195
>gi|327401115|ref|YP_004341954.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
gi|327316623|gb|AEA47239.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
Length = 212
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 93 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHI 152
+AD L PVVS ASIVAKV RDR + E+ + + +FGSGY D T +L ++
Sbjct: 131 RADVLKPVVSAASIVAKVERDREI-----EKIKKELGVDFGSGYASDKRTIEFLKEYFKE 185
Query: 153 IFGFPSLVRFSWGT----CTSHFKD 173
FP VR SW T C +D
Sbjct: 186 HGRFPPYVRRSWKTLDRICQQSLED 210
>gi|335436880|ref|ZP_08559669.1| ribonuclease HII [Halorhabdus tiamatea SARL4B]
gi|334897145|gb|EGM35282.1| ribonuclease HII [Halorhabdus tiamatea SARL4B]
Length = 256
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 26 ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD--AEKYQAKLSQRF 83
E+ ++ + ++N ++ + + V + G+ YLD GD A +++ +++ R
Sbjct: 106 EIPVARIDDPETDMNTLTVAAHAEALEPVASDGLA---TYLDA-GDTNAVRFERRVADRV 161
Query: 84 PS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 142
+ + AD+ YP+V ASIVAKV RD + E + + GSGYPGD T
Sbjct: 162 EADLDLRAEHGADAAYPIVGAASIVAKVERDAHVAALAAE------YGDLGSGYPGDSTT 215
Query: 143 KAWLTDHKHIIFGFPSLVRFSWGT 166
+A+L + P+ R SW T
Sbjct: 216 RAFLERYIEEHGELPACARESWQT 239
>gi|289582357|ref|YP_003480823.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|448282223|ref|ZP_21473512.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|289531910|gb|ADD06261.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|445576857|gb|ELY31305.1| ribonuclease HII [Natrialba magadii ATCC 43099]
Length = 221
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 26 ELSAKMLNKNKINLNEIS---HDSAIGLIT--RVLNIGILLTEVYLDTVGDAEKYQAKLS 80
E++ ++ + ++N +S H AI + VL I DT DA+++ +++
Sbjct: 64 EITTAQIDDPETDMNSLSVRAHAEAIEAVAADTVLEAPITGLCDACDT--DADRFARRVA 121
Query: 81 QRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRG--WIFEETAENMHRNFGSGY 136
R ++ +S + AD P+V ASI+AKV RD + F + GSGY
Sbjct: 122 DRC-GLECTISAEHGADDDSPIVGAASIIAKVERDTHVESVSAAFPDCGP-----VGSGY 175
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
P DP T+A+L + P+ R SW TC
Sbjct: 176 PSDPNTRAFLESYVDAHGELPACARESWSTC 206
>gi|399577795|ref|ZP_10771547.1| rnase hii [Halogranum salarium B-1]
gi|399237237|gb|EJN58169.1| rnase hii [Halogranum salarium B-1]
Length = 219
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 86 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET--- 142
I V AD + +V ASIVAKV RD + E A + + GSGYP DP+T
Sbjct: 126 IDVVSEHGADETHGIVGAASIVAKVERDSMVEAIAAEYDA---YGDVGSGYPSDPKTRRF 182
Query: 143 -KAWLTDHKHIIFGFPSLVRFSWGTC 167
KA++ DH + P R SW TC
Sbjct: 183 LKAYVADHGDV----PDCARRSWSTC 204
>gi|330831767|ref|XP_003291928.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
gi|325077872|gb|EGC31557.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
Length = 206
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 39 LNEISHDSAIGLIT-RVLNIGI-LLTEVYLDTV-GDAEKYQAKLSQRF--PSIKFVVSKK 93
LNEI + LI +LN+ +V LD++ ++EKY F P+ + + K
Sbjct: 81 LNEIETNIFYQLIKDSILNLAKNQPVKVILDSIESNSEKYSLPFKSYFGSPTCEIICETK 140
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
AD Y V ASI+AKV RD+ ++ E + + GSGYP D T ++ +
Sbjct: 141 ADIKYTSVGAASILAKVKRDQFIKSLEIE-----LDQTIGSGYPSDSITTEFVNSYLKKN 195
Query: 154 FGFPSLVRFSW 164
F +P +R SW
Sbjct: 196 FEYPDSMRRSW 206
>gi|448654674|ref|ZP_21681600.1| ribonuclease HII [Haloarcula californiae ATCC 33799]
gi|445766522|gb|EMA17649.1| ribonuclease HII [Haloarcula californiae ATCC 33799]
Length = 211
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 9/151 (5%)
Query: 18 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 77
+ D + E+S + ++ ++ ++N ++ + ++ V G+ T DT DA ++
Sbjct: 54 SADAVGIAEISVERIDADETDMNTLTVEGQAEALSAVARDGLSGTVDAGDT--DAARFGR 111
Query: 78 KLSQRFPSIKFVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 136
+++ + V ++ AD +V ASI+AKV RD + E AE + + GSGY
Sbjct: 112 RVADAVDADVAVTAEHGADETDSLVGAASIIAKVARDT----HVAELAAE--YGDVGSGY 165
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
P DP T+ +L+D+ P+ R SW TC
Sbjct: 166 PSDPTTRTFLSDYVDRHGELPACARRSWSTC 196
>gi|116754092|ref|YP_843210.1| ribonuclease HII [Methanosaeta thermophila PT]
gi|121694604|sp|A0B796.1|RNH2_METTP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|116665543|gb|ABK14570.1| RNase HII [Methanosaeta thermophila PT]
Length = 211
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 86 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET--- 142
I + AD + VV+ ASI+AKV RDR++R E A + R GSGYP DP T
Sbjct: 127 IDILAEHNADRKHIVVAAASIIAKVARDRSIRDL---EAA--LGRPLGSGYPSDPATVRF 181
Query: 143 -KAWLTDHKHIIFGFPSLVRFSWGTC 167
K W+ ++ + PS VR SW T
Sbjct: 182 LKEWIEENGDL----PSFVRKSWSTA 203
>gi|313125351|ref|YP_004035615.1| rnase hii [Halogeometricum borinquense DSM 11551]
gi|448287053|ref|ZP_21478269.1| ribonuclease HII [Halogeometricum borinquense DSM 11551]
gi|312291716|gb|ADQ66176.1| RNase HII [Halogeometricum borinquense DSM 11551]
gi|445572799|gb|ELY27329.1| ribonuclease HII [Halogeometricum borinquense DSM 11551]
Length = 224
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 86 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 145
+ V +AD YP V AS+VAKV RD TL I E + + GSGYP DP T+ +
Sbjct: 131 VTVVSEHRADETYPHVGAASVVAKVRRD-TLMETIGERYED--YGPVGSGYPSDPTTREF 187
Query: 146 LTDHKHIIFGFPSLVRFSWGTC 167
L + P R SW TC
Sbjct: 188 LRTYVSETGELPDCARASWATC 209
>gi|148643039|ref|YP_001273552.1| ribonuclease HII [Methanobrevibacter smithii ATCC 35061]
gi|222445276|ref|ZP_03607791.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii
DSM 2375]
gi|261350165|ref|ZP_05975582.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
gi|189043626|sp|A5ULV6.1|RNH2_METS3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|148552056|gb|ABQ87184.1| ribonuclease HII, RnhB [Methanobrevibacter smithii ATCC 35061]
gi|222434841|gb|EEE42006.1| ribonuclease HII [Methanobrevibacter smithii DSM 2375]
gi|288860951|gb|EFC93249.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
Length = 207
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 64/133 (48%), Gaps = 14/133 (10%)
Query: 37 INLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKAD 95
INLNEI IG+ + N+ + +D V AE++Q KL+ + V KAD
Sbjct: 80 INLNEIER---IGMEKILSNLN--PEKAIVDAVDIKAERFQNKLAND-TGVNVVAEHKAD 133
Query: 96 SLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN-FGSGYPGDPETKAWLTDHKHIIF 154
Y VS ASI+AK RD I E + + GSGYP DP TK +LT+ +
Sbjct: 134 DNYIEVSAASIIAKQERD----AHIAEINKDYIKMGGIGSGYPSDPITKKFLTNFTY--D 187
Query: 155 GFPSLVRFSWGTC 167
P VR SW T
Sbjct: 188 EMPDFVRKSWATV 200
>gi|448641404|ref|ZP_21678014.1| ribonuclease HII [Haloarcula sinaiiensis ATCC 33800]
gi|445760818|gb|EMA12074.1| ribonuclease HII [Haloarcula sinaiiensis ATCC 33800]
Length = 211
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 18 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 77
+ D + E+S + ++ ++ ++N ++ + ++ V G+ T DT DA ++
Sbjct: 54 SADAVGIAEISVERIDADETDMNTLTVEGQAEALSAVARDGLSGTVDAGDT--DAARFGR 111
Query: 78 KLSQRFPSIKFVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 136
+++ + V ++ AD +V ASI+AKV RD + E AE + + GSGY
Sbjct: 112 RVADAVDADVAVTAEHGADETDSLVGAASIIAKVARDT----HVAELAAE--YGDVGSGY 165
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
P DP T+ +L D+ P+ R SW TC
Sbjct: 166 PSDPTTRTFLADYVDRHGELPACARRSWSTC 196
>gi|435846199|ref|YP_007308449.1| RNase HII [Natronococcus occultus SP4]
gi|433672467|gb|AGB36659.1| RNase HII [Natronococcus occultus SP4]
Length = 224
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 71 DAEKYQAKLS-----QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 125
DA+++ +++ +R ++ + AD P+V AS+VAKV RD ++ E
Sbjct: 114 DADRFARRVADTCEPERDLELELTAAHGADDEDPIVGAASVVAKVERDASMAALADE--- 170
Query: 126 ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 173
+ + GSGYP DP T+ +L + P R SW TC D
Sbjct: 171 ---YGSVGSGYPSDPTTREFLESYVADHGELPPFARESWSTCADVLAD 215
>gi|288931994|ref|YP_003436054.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
gi|288894242|gb|ADC65779.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
Length = 211
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 28/152 (18%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLS 80
+I P EL++KM K +NEI ++ + +I++ LN + V++D+ + K
Sbjct: 66 VISPEELNSKM---EKTTINEILKEACVEIISK-LNPDV----VFVDS------FDVKPE 111
Query: 81 QRFPSIKFVVSKKADSLYP-----VVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
+ +K + KK +++ VV+ ASI+AK RD + E + + +FGSG
Sbjct: 112 RLEEELKRLTGKKVVAMHEGEREVVVAAASIIAKCLRDEII------EELKREYGDFGSG 165
Query: 136 YPGDPETKAWLTDHKHIIFG-FPSLVRFSWGT 166
Y D +T+ WL + I G P +VR W T
Sbjct: 166 YASDEKTRRWLEE--QIKRGKIPEIVRKRWKT 195
>gi|448730927|ref|ZP_21713230.1| ribonuclease HII [Halococcus saccharolyticus DSM 5350]
gi|445792521|gb|EMA43122.1| ribonuclease HII [Halococcus saccharolyticus DSM 5350]
Length = 223
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 16/151 (10%)
Query: 25 RELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG--------DAEKYQ 76
RE++ ++ +LN ++ +A I V+++G E D + DAE++
Sbjct: 64 REVTPSEIDAPDTDLNALTIAAAGAAIDGVVSVG-ADAEAAADRMAGVIDACDTDAERFG 122
Query: 77 AKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
++ + + + AD Y +V AS+VAKV RD + E H + GSG
Sbjct: 123 RRVREATTADVAITAEHGADEEYDLVGAASVVAKVARDAHIADLADE------HGSVGSG 176
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
YP DP T+ +L + H P R SW T
Sbjct: 177 YPSDPTTRDFLARYVHEHGDLPPFARRSWKT 207
>gi|222480377|ref|YP_002566614.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
gi|222453279|gb|ACM57544.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
Length = 234
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 84 PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET- 142
P + + AD P+V AS+VAKV RD + + A + GSGYP DP T
Sbjct: 139 PEVDVSAAHGADEDDPMVGAASVVAKVARDERMADIDADYPA---YDGLGSGYPSDPATR 195
Query: 143 ---KAWLTDHKHIIFGFPSLVRFSWGTC 167
+A++ DH ++ P R SW TC
Sbjct: 196 NFLRAYVNDHGNV----PGCARRSWATC 219
>gi|300710295|ref|YP_003736109.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|448294621|ref|ZP_21484700.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|299123978|gb|ADJ14317.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|445586298|gb|ELY40580.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
Length = 214
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 71 DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
DA ++ ++ QR P + AD + +V AS+VAKV RDR + E +
Sbjct: 108 DAGRFVHRVGQRLPEGVSLSGEHGADEHHAIVGAASVVAKVERDRRVAAL------EAAY 161
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
GSGYP DP T+ +L ++ P R SW T
Sbjct: 162 GEVGSGYPSDPTTREFLAEYVAENGELPECARASWKT 198
>gi|76801839|ref|YP_326847.1| ribonuclease HII [Natronomonas pharaonis DSM 2160]
gi|115305552|sp|Q3IRF6.1|RNH2_NATPD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|76557704|emb|CAI49287.1| ribonuclease H, type 2 [Natronomonas pharaonis DSM 2160]
Length = 212
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 17/154 (11%)
Query: 19 VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAK 78
D ID + + + + N+N+++ + + V G E L GD + +
Sbjct: 56 ADRIDVAVVECQPADIDDANMNDLTVAAHAAALDGVAASG----ETVLCDAGDVDA--GR 109
Query: 79 LSQRFPS-----IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ R + + AD +V ASI+AK R+R + E + G
Sbjct: 110 FADRVAAAATLDVSVAAEHGADGSDDLVGAASIIAKSARERHV------EQLSEQYGAVG 163
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
SGYP DP TKA+L + GFP VR SW TC
Sbjct: 164 SGYPSDPTTKAFLREAFEQEGGFPPCVRTSWSTC 197
>gi|432330429|ref|YP_007248572.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanoregula
formicicum SMSP]
gi|432137138|gb|AGB02065.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanoregula
formicicum SMSP]
Length = 213
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 87 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET---- 142
+ V AD +PVVS ASI+AKVTRDR + T + + GSGYP DP T
Sbjct: 123 EIVSEHHADEKFPVVSAASIIAKVTRDRAI------ATLSKKYGDLGSGYPSDPVTIRFL 176
Query: 143 KAWLTDHKHIIFGFPSLVRFSWGT 166
W+ +H+ P + R SW T
Sbjct: 177 NDWIDEHR----TPPPIARKSWKT 196
>gi|448355147|ref|ZP_21543900.1| ribonuclease HII [Natrialba hulunbeirensis JCM 10989]
gi|445635912|gb|ELY89077.1| ribonuclease HII [Natrialba hulunbeirensis JCM 10989]
Length = 221
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 19/152 (12%)
Query: 26 ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV--YLDTVG-DAEKYQAKLSQR 82
E++ ++ + ++N +S + I V L T + + D DA+++ +++ R
Sbjct: 64 EITTAQIDDPETDMNSLSVQAHAEAIEAVAADTGLETPISGHCDACDTDADRFARRVADR 123
Query: 83 FP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF------GSG 135
AD PVV ASI+AKV RD + E++ F GSG
Sbjct: 124 CGLECTITAEHGADDDSPVVGAASIIAKVERDAHV---------ESISAGFPDCGPVGSG 174
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
YP DP T+A+L + P+ R SW TC
Sbjct: 175 YPSDPNTRAFLESYVDAHGELPACARESWSTC 206
>gi|240103148|ref|YP_002959457.1| ribonuclease HII [Thermococcus gammatolerans EJ3]
gi|239910702|gb|ACS33593.1| Ribonuclease HII (rnhB) [Thermococcus gammatolerans EJ3]
Length = 226
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 87 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 146
+ V +AD + VS ASI+AKV RDR + E + + GSGYP DP T+ +L
Sbjct: 129 EIVAEHRADDKFVPVSAASILAKVVRDRAI------EKLKEEYGEIGSGYPSDPRTRDFL 182
Query: 147 TDHKHIIFGFPSLVRFSWGTC 167
+ FP +VR +W T
Sbjct: 183 ERYYREHGDFPPIVRRTWKTV 203
>gi|330835291|ref|YP_004410019.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
gi|329567430|gb|AEB95535.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
Length = 208
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV--LNIGILLTEVYLDTVGDAE 73
G AV +P E+ + NLN +++ +I+ + LN I V +D VG E
Sbjct: 61 GIAVAKAEPLEIDSN-------NLNALTYRKVSEIISSLSWLNPKI----VTVDKVGK-E 108
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+L +R + VV K AD L+ S ASI+AKV RD + E + + +FG
Sbjct: 109 TEVIELIERLGFVANVVHK-ADELFIEASSASIIAKVIRDNII------ERLKLKYGDFG 161
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 170
SGYP DP+T W+ D P+++R SW +
Sbjct: 162 SGYPSDPKTIRWVKDLVSKGEEPPNIIRKSWKLLQKY 198
>gi|448311343|ref|ZP_21501107.1| ribonuclease HII [Natronolimnobius innermongolicus JCM 12255]
gi|445605171|gb|ELY59102.1| ribonuclease HII [Natronolimnobius innermongolicus JCM 12255]
Length = 242
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
AD P+V ASIVAKV RD + A + + GSGYP DP T+A+L +
Sbjct: 157 ADDESPIVGAASIVAKVERDAHVESL---SAAYDAYETVGSGYPSDPNTQAFLEAYVDDH 213
Query: 154 FGFPSLVRFSWGTC 167
P R SW TC
Sbjct: 214 GELPVCARESWSTC 227
>gi|424811467|ref|ZP_18236718.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalinarum
sp. J07AB56]
gi|339757193|gb|EGQ40774.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalinarum
sp. J07AB56]
Length = 217
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 25 RELSAKMLNK--NKINLNEISHDSAIGLITRVL--NIGILLTEVYLDTVGDAEKYQAKLS 80
RE+ A +L+ ++ +N++ + LI+R + I L E DA+ Y+ KL
Sbjct: 66 REVEAPVLDDKMEEVTINDVELEEFAALISRAQPEKVVIDLPE------HDADVYEEKLL 119
Query: 81 QRFPSIKFVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 139
R V ++ AD+ YP+VS AS+VAK R+R + E E +F SGYP D
Sbjct: 120 SRLDFDPEVTAEHGADAAYPIVSAASVVAKSARERHV-----ERLHEKYGVDFDSGYPHD 174
Query: 140 PETKAWLTDHKHIIFGFPSLVRFSWGTC 167
T +L + P R W T
Sbjct: 175 EATIEFLKGYVRSTGDLPDEARRQWSTS 202
>gi|448415068|ref|ZP_21577939.1| ribonuclease HII [Halosarcina pallida JCM 14848]
gi|445681186|gb|ELZ33622.1| ribonuclease HII [Halosarcina pallida JCM 14848]
Length = 224
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
++ +AD YP V AS+VAKV RD + + TA + GSGYP DP T+
Sbjct: 130 AVSVTAEHRADETYPHVGAASVVAKVERDARMAEIDEDVTA---YGPVGSGYPSDPTTRE 186
Query: 145 WLTDHKHIIFGFPSLVRFSWGTC 167
+L + P R SW TC
Sbjct: 187 FLRRYVGETGELPDCARASWSTC 209
>gi|374328021|ref|YP_005086221.1| ribonuclease HII [Pyrobaculum sp. 1860]
gi|356643290|gb|AET33969.1| ribonuclease HII [Pyrobaculum sp. 1860]
Length = 195
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
DA++Y + LS F + + VV+ P V+ ASIVAKV RDR L E +
Sbjct: 106 DADRYGSGLS--FLTGRRVVALHKGEKVPQVAAASIVAKVVRDRLL------EVVKREVG 157
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFK 172
+FGSGYP D +T WL P VR+SWGT FK
Sbjct: 158 DFGSGYPSDRKTVEWLRAGL-----VPRECVRWSWGTVGKLFK 195
>gi|448366041|ref|ZP_21554295.1| ribonuclease HII [Natrialba aegyptia DSM 13077]
gi|445654650|gb|ELZ07501.1| ribonuclease HII [Natrialba aegyptia DSM 13077]
Length = 241
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 71 DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
DAE++ +++ +++ AD P+V ASIVAKV RD + ET +
Sbjct: 135 DAERFARRVTDACTLNLELDARHGADEDSPIVGAASIVAKVARDAHV------ETIADEF 188
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+ GSGYP DP T+ +L + P + R SW TC
Sbjct: 189 GSVGSGYPSDPTTREFLERYVDEHGELPPVARTSWATC 226
>gi|448475115|ref|ZP_21602833.1| ribonuclease HII [Halorubrum aidingense JCM 13560]
gi|445816586|gb|EMA66473.1| ribonuclease HII [Halorubrum aidingense JCM 13560]
Length = 260
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 83 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 142
P + + AD P+V AS+VAKV RD R + T + + GSGYPGD T
Sbjct: 164 LPGVDVEAAHGADEDDPLVGAASVVAKVARD--ARMDAIDATYPD-YAAVGSGYPGDATT 220
Query: 143 KAWLTDHKHIIFGFPSLVRFSWGTC 167
+A+L D+ P R SW TC
Sbjct: 221 RAFLRDYVADHGEVPDCARRSWSTC 245
>gi|448733907|ref|ZP_21716147.1| ribonuclease HII [Halococcus salifodinae DSM 8989]
gi|445801893|gb|EMA52208.1| ribonuclease HII [Halococcus salifodinae DSM 8989]
Length = 223
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 25 RELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-------DAEKYQA 77
RE++ ++ +LN ++ ++A I V +IG G D E++
Sbjct: 64 REVTPSAIDAPDTDLNALTIEAAGATIDSVASIGADAKATADGLAGVVDACDTDTERFGR 123
Query: 78 KLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 136
++ + + ++ AD + +V AS+VAKV RD + E H GSGY
Sbjct: 124 RVHEAATADVEITAEHGADEEHALVGAASVVAKVARDAHIADLADE------HGPIGSGY 177
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
P DP T+ +L ++ P R SW T
Sbjct: 178 PSDPTTREFLAEYVREHGDLPPFARRSWKT 207
>gi|448363470|ref|ZP_21552070.1| ribonuclease HII [Natrialba asiatica DSM 12278]
gi|445646283|gb|ELY99272.1| ribonuclease HII [Natrialba asiatica DSM 12278]
Length = 237
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 71 DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
DAE++ +++ ++ AD P+V ASIVAKV RD + ET +
Sbjct: 131 DAERFARRVTDACTLELELDARHGADEDSPIVGAASIVAKVARDAHV------ETIADEF 184
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+ GSGYP DP T+ +L + P + R SW TC
Sbjct: 185 GSVGSGYPSDPTTREFLERYVDEHGELPPVARTSWATC 222
>gi|448344676|ref|ZP_21533580.1| ribonuclease HII [Natrinema altunense JCM 12890]
gi|445637317|gb|ELY90468.1| ribonuclease HII [Natrinema altunense JCM 12890]
Length = 146
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 32 LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVS 91
+N + + + D AIG + G + + DA+++ +++ S++ V
Sbjct: 1 MNSLAVEAHATAIDDAIGSVGSAAAAGDRPSGLCDACDTDADRFARRVADAC-SVEIDVD 59
Query: 92 KK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDH 149
+ AD P+V ASIVAKV RD + E + GSGYPGD T+ +L +
Sbjct: 60 ARHGADDDAPLVGAASIVAKVDRDAHIAALADE------YGPIGSGYPGDSTTREFLASY 113
Query: 150 KHIIFGFPSLVRFSWGTC 167
P R SW TC
Sbjct: 114 VDEHSSLPPFARESWSTC 131
>gi|304315158|ref|YP_003850305.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
gi|302588617|gb|ADL58992.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
Length = 207
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSL 97
NLNEI + +I +++ V + E+ ++ F I+ AD+
Sbjct: 81 NLNEIEKIAIKRIIAEAQPDSVIIDSVDVKP----ERLTEEIRSHFGDIEVKAEHGADAK 136
Query: 98 YPVVSGASIVAKVTRDRTLRGWIFEETAENMHR---NFGSGYPGDPETKAWLTDHKHIIF 154
Y V+ ASI+AKV RD + E + +R + GSGYP DP T+A+L +
Sbjct: 137 YYPVAAASIIAKVERDLEI------ERIQKRNRKLGDIGSGYPSDPRTRAFLESFSY--D 188
Query: 155 GFPSLVRFSWGTCTSHFKD 173
P VR SW T K+
Sbjct: 189 ELPDFVRKSWATVQKRRKN 207
>gi|41614859|ref|NP_963357.1| hypothetical protein NEQ063 [Nanoarchaeum equitans Kin4-M]
gi|74579762|sp|Q74MH3.1|RNH2_NANEQ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|40068583|gb|AAR38918.1| NEQ063 [Nanoarchaeum equitans Kin4-M]
Length = 200
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 35 NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKA 94
++ NLNE+ LI + + ++ + +D+ E Y+ ++ + +++K
Sbjct: 70 DRYNLNELEAKVTANLINSIED---EISHIVIDSPERPENYKLRILKYLKKRVKIITKNK 126
Query: 95 DSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIF 154
P+V+ ASIVAKV RDR + E+ E +FGSGYP D T+ L + I+
Sbjct: 127 GEEDPLVAAASIVAKVIRDREI-----EKIKEQTGIDFGSGYPSDKRTRKALEQYYRILK 181
Query: 155 GFPSLVRFSW 164
+ +R W
Sbjct: 182 PY---IRKKW 188
>gi|448465151|ref|ZP_21598718.1| ribonuclease HII [Halorubrum kocurii JCM 14978]
gi|445815126|gb|EMA65061.1| ribonuclease HII [Halorubrum kocurii JCM 14978]
Length = 238
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 83 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 142
P + + AD P+V AS+VAKV RD+ + + + GSGYP DP T
Sbjct: 142 LPEVDVSAAHGADEDDPLVGAASVVAKVARDQRM---AAVDADYAAYDGVGSGYPSDPTT 198
Query: 143 ----KAWLTDHKHIIFGFPSLVRFSWGTC 167
+A++ DH + P R SW TC
Sbjct: 199 RSFLRAYVDDHGDV----PDCARRSWATC 223
>gi|448360110|ref|ZP_21548753.1| ribonuclease HII [Natrialba chahannaoensis JCM 10990]
gi|445640487|gb|ELY93575.1| ribonuclease HII [Natrialba chahannaoensis JCM 10990]
Length = 221
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 11/148 (7%)
Query: 26 ELSAKMLNKNKINLNEIS---HDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQR 82
E++ ++ + ++N +S H AI + + +T DA+++ +++ +
Sbjct: 64 EITIAQIDDPETDMNSLSVLAHAEAIEAVACDAGLETPITGHCDACDTDADRFARRVADQ 123
Query: 83 FP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG--WIFEETAENMHRNFGSGYPGD 139
AD P+V ASI+AKV RD + F + GSGYP D
Sbjct: 124 CGLECTITAEHGADDDSPIVGAASIIAKVERDAHVESVSAAFPDCGP-----VGSGYPSD 178
Query: 140 PETKAWLTDHKHIIFGFPSLVRFSWGTC 167
P T+A+L + PS R SW TC
Sbjct: 179 PNTRAFLESYVDAHGKLPSCARESWSTC 206
>gi|448384513|ref|ZP_21563351.1| ribonuclease HII [Haloterrigena thermotolerans DSM 11522]
gi|445658579|gb|ELZ11397.1| ribonuclease HII [Haloterrigena thermotolerans DSM 11522]
Length = 223
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 71 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
DA+++ +++ V + AD P+V ASIVAKV RD + E
Sbjct: 116 DADRFARRVADACSLEALTVDARHGADDESPLVGAASIVAKVERDSHVAALADE------ 169
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+ GSGYPGD T+ +L D+ P R SW TC
Sbjct: 170 YGPIGSGYPGDSTTREFLADYVDEHGDLPPFARASWSTC 208
>gi|257387378|ref|YP_003177151.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
gi|257169685|gb|ACV47444.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
Length = 210
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 26 ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPS 85
E++ + ++ + ++N ++ + ++ V G+ DT DAE++ +++ R S
Sbjct: 61 EITPERIDDPETDMNTLTVAAHAEALSAVATDGLSGLVDAGDT--DAERFGRRVADRVDS 118
Query: 86 -IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
I + AD P+V ASIVAK R+ + E A GSGYP DP T+
Sbjct: 119 EIDLGSAHGADETDPLVGAASIVAKSAREAHVAALADEFGA------VGSGYPSDPATRE 172
Query: 145 WLTDHKHIIFGFPSLVRFSWGTC 167
+L + P R SW TC
Sbjct: 173 FLKRYVDEHGALPDCARTSWSTC 195
>gi|161528901|ref|YP_001582727.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
gi|160340202|gb|ABX13289.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
Length = 205
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF--GSGYPGDPETKAWLTDHKH 151
ADS + VVS ASI+AKVTRDR + E + + + GSGYP D +T ++T +
Sbjct: 133 ADSRFVVVSAASIIAKVTRDRAI---------EKLRKTYDLGSGYPSDSKTVKFVTRYYK 183
Query: 152 IIFGFPSLVRFSW 164
P+ VR SW
Sbjct: 184 TSKSLPTFVRKSW 196
>gi|218883330|ref|YP_002427712.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
gi|218764946|gb|ACL10345.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
Length = 255
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGSGYPGDPET 142
+++ + +AD+ YP VS AS+VAK+ RD ++ I ET GSGYP DP +
Sbjct: 137 NVEIFIESRADAKYPAVSAASVVAKILRDSNIKALQVIAGET--------GSGYPSDPVS 188
Query: 143 KAWLTDHKHIIFGFPSLVRFSWGTC 167
+ WL + P +R SWG
Sbjct: 189 RRWLANMYRDDGEPPVYIRKSWGIV 213
>gi|390937865|ref|YP_006401603.1| RNase HII [Desulfurococcus fermentans DSM 16532]
gi|390190972|gb|AFL66028.1| RNase HII [Desulfurococcus fermentans DSM 16532]
Length = 255
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGSGYPGDPET 142
+++ + +AD+ YP VS AS+VAK+ RD ++ I ET GSGYP DP +
Sbjct: 137 NVEIFIESRADAKYPAVSAASVVAKILRDSNIKALQVIAGET--------GSGYPSDPVS 188
Query: 143 KAWLTDHKHIIFGFPSLVRFSWGTC 167
+ WL + P +R SWG
Sbjct: 189 RRWLANMYRDDGEPPVYIRRSWGIV 213
>gi|15679041|ref|NP_276158.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
H]
gi|7227913|sp|O27102.1|RNH2_METTH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|2622126|gb|AAB85519.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 206
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSL 97
NLNEI + +I +++ V + E+ + ++ F I+ AD+
Sbjct: 81 NLNEIEKIAIKRIIPEAQPDRVIIDSVDVK----PERLEEEIRSHFGEIEVTAEHGADTR 136
Query: 98 YPVVSGASIVAKVTRDRTLRGWIFEETAENMHR---NFGSGYPGDPETKAWLTDHKHIIF 154
Y V+ ASI+AKV RD + E+ + +R + GSGYP DP T+ +L +
Sbjct: 137 YYPVAAASIIAKVERDLEI------ESIQKKNRKLGDIGSGYPSDPRTREFLESFTY--D 188
Query: 155 GFPSLVRFSWGTC 167
P VR SW T
Sbjct: 189 ELPDFVRRSWATV 201
>gi|159042290|ref|YP_001541542.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
gi|189043570|sp|A8MAH5.1|RNH2_CALMQ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|157921125|gb|ABW02552.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
Length = 209
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 61 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 120
+T VY+D+ D + + ++ +V AD P+VS ASIVAKV RD +
Sbjct: 102 VTRVYVDS-PDPNPSRFRGFINVKDVELIVLNHADESIPLVSAASIVAKVIRDTIISR-- 158
Query: 121 FEETAENMHRNFGSGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGT 166
+ET + +FGSGYP DP T + W+ + P +VR SW T
Sbjct: 159 LKET----YGDFGSGYPSDPRTISALRRWINNGT-----LPPIVRRSWRT 199
>gi|433592396|ref|YP_007281892.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Natrinema
pellirubrum DSM 15624]
gi|448333742|ref|ZP_21522931.1| ribonuclease HII [Natrinema pellirubrum DSM 15624]
gi|433307176|gb|AGB32988.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Natrinema
pellirubrum DSM 15624]
gi|445621621|gb|ELY75092.1| ribonuclease HII [Natrinema pellirubrum DSM 15624]
Length = 223
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 71 DAEKYQAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
DA+++ +++ P ++ AD +V AS+VAKV RD + E
Sbjct: 116 DADRFARRVADACPLEAVSIDARHGADDESTLVGAASVVAKVERDAHVAALADE------ 169
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+ GSGYPGD T+ +L D+ P R SW TC
Sbjct: 170 YGEIGSGYPGDSTTREFLADYVDEHGDLPPFARASWSTC 208
>gi|429191022|ref|YP_007176700.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Natronobacterium gregoryi SP2]
gi|448327412|ref|ZP_21516740.1| ribonuclease HII [Natronobacterium gregoryi SP2]
gi|429135240|gb|AFZ72251.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Natronobacterium gregoryi SP2]
gi|445608510|gb|ELY62349.1| ribonuclease HII [Natronobacterium gregoryi SP2]
Length = 221
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
AD PVV ASIVAKV RD + I EE + + GSGYP DP T+ +L +
Sbjct: 139 ADDDSPVVGAASIVAKVERDAHV-AAISEE-----YGDVGSGYPSDPTTREFLESYVDDH 192
Query: 154 FGFPSLVRFSWGTC 167
P R SW TC
Sbjct: 193 GELPPFARSSWSTC 206
>gi|448350813|ref|ZP_21539624.1| ribonuclease HII [Natrialba taiwanensis DSM 12281]
gi|445635685|gb|ELY88852.1| ribonuclease HII [Natrialba taiwanensis DSM 12281]
Length = 254
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
AD P+V ASIVAKV RD + ET + + GSGYP DP T+ +L +
Sbjct: 172 ADENSPIVGAASIVAKVARDAHV------ETIADEFGSVGSGYPSDPTTREFLERYVDEH 225
Query: 154 FGFPSLVRFSWGTC 167
P + R SW TC
Sbjct: 226 GELPPVARASWATC 239
>gi|66817316|ref|XP_642511.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
gi|60470610|gb|EAL68588.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
Length = 507
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 63 EVYLDTVG-DAEKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 119
++ +D++ + +KY FP + KAD + V ASI+AKV RDR W
Sbjct: 241 KIIIDSIEMNTQKYSQPFKMEFPPPLYQIYCETKADHKFISVGAASIIAKVERDR----W 296
Query: 120 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 164
+ ++ N GSGYP DP T +++ + + +P+ +R SW
Sbjct: 297 M-KQLETNTSHIIGSGYPSDPLTISYVNNFFKKYYVYPNSMRKSW 340
>gi|354610229|ref|ZP_09028185.1| ribonuclease HII [Halobacterium sp. DL1]
gi|353195049|gb|EHB60551.1| ribonuclease HII [Halobacterium sp. DL1]
Length = 210
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 26 ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPS 85
E+ ++ + ++N ++ + +++V + G L V V DAE++ +++ +
Sbjct: 61 EIPVARIDDPETDMNALTVAAQADALSQVASDG-LAGHVDAGDV-DAERFGRRVADAVTA 118
Query: 86 -IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
+ AD Y V+ ASIVAKV RD + E A H + GSGYP DP T+
Sbjct: 119 DVDITAEHGADDEYDFVAAASIVAKVARDSHV-----AELATG-HGDVGSGYPSDPTTRE 172
Query: 145 WLTDHKHIIFGFPSLVRFSWGT 166
+L+++ P R SW T
Sbjct: 173 FLSEYVREHGCLPDCARESWQT 194
>gi|9664592|gb|AAF97195.1|AF268611_19 ribonuclease HII [uncultured marine group II euryarchaeote 37F11]
Length = 250
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 29/165 (17%)
Query: 16 GWAVD--IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA- 72
GW VD I P + + K +N+ E+ L +LN L LD + DA
Sbjct: 68 GWYVDTIICKPNRIDNAVYAKG-LNILEVD------LFASILNRHHRLFTQELDILLDAC 120
Query: 73 ----EKYQAKLSQRF---PSIK--FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 123
E++ ++S+R P +K + KAD+ + +V GASI+AKV RD + E
Sbjct: 121 DVNEERFSNRISERLTDWPWLKTTMIAEHKADTNHRIVGGASILAKVVRDMEI-----ER 175
Query: 124 TAENMHRNFGSGYPGDPETKAWLTDHKHIIF--GFPSLVRFSWGT 166
A ++ GSGYP DP T L ++I G +R+SW T
Sbjct: 176 IAVDVGAPVGSGYPADPNTVKALP---YLIKEDGIHEEIRWSWAT 217
>gi|448725585|ref|ZP_21708035.1| ribonuclease HII [Halococcus morrhuae DSM 1307]
gi|445798039|gb|EMA48468.1| ribonuclease HII [Halococcus morrhuae DSM 1307]
Length = 209
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 71 DAEKYQAKL-SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
DAE++ ++ ++ ++ AD + V ASIVAKV RD + E H
Sbjct: 103 DAERFGRRVRAETATDVELAAEHGADESHEHVGAASIVAKVARDAHVADLAAE------H 156
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 181
GSGYPGD T+ +L ++ G P R SW T +D++E +S
Sbjct: 157 GAIGSGYPGDGTTREFLREYVREHGGLPPFARASWKTS----RDVLEAADQS 204
>gi|383620733|ref|ZP_09947139.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
gi|448698324|ref|ZP_21698963.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
gi|445780943|gb|EMA31813.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
Length = 223
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
AD P+V ASIVAKV RD + E + + GSGYPGD T+ +L+D+
Sbjct: 141 ADDDSPLVGAASIVAKVERDAHVAAIADE------YGDVGSGYPGDSTTREFLSDYVAEH 194
Query: 154 FGFPSLVRFSWGTC 167
P R SW TC
Sbjct: 195 GELPPFARSSWSTC 208
>gi|448599595|ref|ZP_21655398.1| ribonuclease HII [Haloferax alexandrinus JCM 10717]
gi|445736268|gb|ELZ87812.1| ribonuclease HII [Haloferax alexandrinus JCM 10717]
Length = 215
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ + L++ S++ +AD + +V ASIVAKV RDR + E + + G
Sbjct: 113 RVREGLAEAGVSVEVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVG 166
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 168
SGYP D T+ +L ++ P R SW TC
Sbjct: 167 SGYPSDGTTREFLREYVRDHGILPDCARKSWSTCA 201
>gi|386876647|ref|ZP_10118743.1| ribonuclease HII [Candidatus Nitrosopumilus salaria BD31]
gi|386805548|gb|EIJ65071.1| ribonuclease HII [Candidatus Nitrosopumilus salaria BD31]
Length = 206
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
ADS + +VS ASI+AKV RDR + T N GSGYP D T ++T++
Sbjct: 133 ADSRFVIVSAASILAKVARDRAI-------TKLRKDHNLGSGYPSDSVTVKFVTNYYKKN 185
Query: 154 FGFPSLVRFSW 164
PS VR SW
Sbjct: 186 HVMPSFVRKSW 196
>gi|448570098|ref|ZP_21639092.1| ribonuclease HII [Haloferax lucentense DSM 14919]
gi|445723399|gb|ELZ75041.1| ribonuclease HII [Haloferax lucentense DSM 14919]
Length = 215
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ + L++ S++ +AD + +V ASIVAKV RDR + E + + G
Sbjct: 113 RVREGLAEAGVSVEVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVG 166
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 168
SGYP D T+ +L ++ P R SW TC
Sbjct: 167 SGYPSDGTTREFLREYVRDHGILPDCARKSWSTCA 201
>gi|448577303|ref|ZP_21642933.1| ribonuclease HII [Haloferax larsenii JCM 13917]
gi|445727948|gb|ELZ79557.1| ribonuclease HII [Haloferax larsenii JCM 13917]
Length = 215
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
S++ +AD + +V ASIVAKV RDR + I EE E GSGYP D T+
Sbjct: 124 SVEVHAQHRADDEHAIVGAASIVAKVERDRRVEA-IAEEYGE-----VGSGYPSDQTTRD 177
Query: 145 WLTD--HKHIIFGFPSLVRFSWGTCT 168
+L + +H I P R SW TC
Sbjct: 178 FLREFVREHGI--LPDCARKSWSTCA 201
>gi|448318842|ref|ZP_21508353.1| ribonuclease HII [Natronococcus jeotgali DSM 18795]
gi|445597681|gb|ELY51754.1| ribonuclease HII [Natronococcus jeotgali DSM 18795]
Length = 220
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 99 PVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS 158
P+V AS+VAKV RD ++ E + GSGYP DP T+ +L + P
Sbjct: 143 PIVGAASVVAKVERDASMAALADE------YGPVGSGYPSDPTTRTFLESYVADRGELPP 196
Query: 159 LVRFSWGTCTSHFKD 173
R SW TC D
Sbjct: 197 FARASWSTCEDVLAD 211
>gi|409729992|ref|ZP_11271603.1| ribonuclease HII [Halococcus hamelinensis 100A6]
gi|448722297|ref|ZP_21704835.1| ribonuclease HII [Halococcus hamelinensis 100A6]
gi|445790008|gb|EMA40681.1| ribonuclease HII [Halococcus hamelinensis 100A6]
Length = 212
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 13/157 (8%)
Query: 26 ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPS 85
E++A ++ + ++N ++ +A I V G+ DT DA ++ ++ +
Sbjct: 63 EVTASEIDDPETDINALTITAAAEAIDDVAEDGLTGIVDACDT--DAARFGRRVVVATET 120
Query: 86 -IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
++ AD + +V ASIVAKV RD + E + H GSGYP DP T+
Sbjct: 121 DVEVTAEHGADENHDLVGAASIVAKVARDSHI------ERLADEHGPLGSGYPSDPNTRE 174
Query: 145 WLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 181
+L ++ P R SW T +D+++ +S
Sbjct: 175 FLREYVREHGELPPFARASWKTS----RDVLDAAAQS 207
>gi|292656107|ref|YP_003536004.1| ribonuclease H II [Haloferax volcanii DS2]
gi|291372875|gb|ADE05102.1| ribonuclease H II [Haloferax volcanii DS2]
Length = 215
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ + L++ S+ +AD + +V ASIVAKV RDR + E + + G
Sbjct: 113 RVREGLAEAGVSVAVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVG 166
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 168
SGYP D T+ +L ++ P R SW TC
Sbjct: 167 SGYPSDGTTREFLREYVRDHGILPDCARKSWSTCA 201
>gi|448620244|ref|ZP_21667592.1| ribonuclease HII [Haloferax denitrificans ATCC 35960]
gi|445757032|gb|EMA08388.1| ribonuclease HII [Haloferax denitrificans ATCC 35960]
Length = 215
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
S++ +AD + +V ASIVAKV RDR + E + GSGYP D T+
Sbjct: 124 SVEVHAQHRADDEHAIVGAASIVAKVERDRRVEALAAE------YGEVGSGYPSDGTTRK 177
Query: 145 WLTDH--KHIIFGFPSLVRFSWGTCT 168
+L ++ +H I P R SW TC
Sbjct: 178 FLREYVREHGI--LPDCARKSWSTCA 201
>gi|448339615|ref|ZP_21528633.1| ribonuclease HII [Natrinema pallidum DSM 3751]
gi|445619604|gb|ELY73131.1| ribonuclease HII [Natrinema pallidum DSM 3751]
Length = 222
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 32 LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVS 91
+N + + + D AIG G + + DA+++ +++ S++ V
Sbjct: 77 MNSLAVEAHATAIDDAIGSFESAAAAGDRPSGLCDACDTDADRFARRVADAC-SLEVDVD 135
Query: 92 KK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDH 149
+ AD P+V ASI+AKV RD + E + GSGYPGD T+ +L +
Sbjct: 136 ARHGADDDAPLVGAASIIAKVDRDAHIAALADE------YGPIGSGYPGDATTREFLASY 189
Query: 150 KHIIFGFPSLVRFSWGTC 167
P R SW TC
Sbjct: 190 VDEHGSLPPFARESWSTC 207
>gi|433422650|ref|ZP_20406055.1| ribonuclease HII [Haloferax sp. BAB2207]
gi|432198565|gb|ELK54835.1| ribonuclease HII [Haloferax sp. BAB2207]
Length = 215
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ + L++ S+ +AD + +V ASIVAKV RDR + E + + G
Sbjct: 113 RVREGLAEAGVSVAVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVG 166
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 168
SGYP D T+ +L ++ P R SW TC
Sbjct: 167 SGYPSDGTTREFLREYVRDHGILPDCARKSWSTCA 201
>gi|448607693|ref|ZP_21659646.1| ribonuclease HII [Haloferax sulfurifontis ATCC BAA-897]
gi|445737630|gb|ELZ89162.1| ribonuclease HII [Haloferax sulfurifontis ATCC BAA-897]
Length = 215
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
S++ +AD + +V ASIVAKV RDR + E + GSGYP D T+
Sbjct: 124 SVEVHAQHRADDEHAIVGAASIVAKVERDRRVEALAAE------YGEVGSGYPSDGTTRK 177
Query: 145 WLTDH--KHIIFGFPSLVRFSWGTCT 168
+L ++ +H I P R SW TC
Sbjct: 178 FLREYVREHGI--LPDCARKSWSTCA 201
>gi|282165631|ref|YP_003358016.1| ribonuclease HII [Methanocella paludicola SANAE]
gi|282157945|dbj|BAI63033.1| ribonuclease HII [Methanocella paludicola SANAE]
Length = 217
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKY 75
+ + ++ P + ++ +++NLNE+ + + +L + Y+D +AE++
Sbjct: 61 YELVVVGPERIDSRA--NDELNLNELE----VECFSNILK-ALRPATAYVDACDVNAERF 113
Query: 76 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
+ + ++ + AD YPVVS ASI+AKV RD ++ E +++ N GS
Sbjct: 114 GINVKKGLDFEVEVISRHNADRDYPVVSAASILAKVHRDALIK-----EICDSIGENVGS 168
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
GY D T +L + P R SW T ++ D ++
Sbjct: 169 GYSHDQVTIEFLKGYYKKNKCMPPFARKSWKTTSAIISDCLQ 210
>gi|146303444|ref|YP_001190760.1| ribonuclease HII [Metallosphaera sedula DSM 5348]
gi|145701694|gb|ABP94836.1| RNase HII [Metallosphaera sedula DSM 5348]
Length = 208
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 16/130 (12%)
Query: 38 NLNEISHDSAIGLITRV--LNIGILLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKA 94
NLN +++ I +I + LN + V +D VG + E +A F K V KA
Sbjct: 76 NLNSLTYTKVIEIIDALSWLNPEV----VTVDKVGKEIEVIRAIEDLGF---KPNVVHKA 128
Query: 95 DSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIF 154
D L+ S ASIVAKV RDR + E+ + +FGSGYP D +T W+ D
Sbjct: 129 DELFVEASSASIVAKVIRDRLI------ESLKKEFGDFGSGYPSDRKTVQWVLDLVSRGE 182
Query: 155 GFPSLVRFSW 164
P+++R SW
Sbjct: 183 EPPNIIRRSW 192
>gi|322372194|ref|ZP_08046735.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
gi|320548203|gb|EFW89876.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
Length = 212
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 84 PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETK 143
P I AD + +V ASIVAKV RD + + E+ H GSGYP DP T+
Sbjct: 120 PEITVEAEHGADETHAIVGAASIVAKVERDAHV-ARLAEQ-----HGGVGSGYPSDPNTR 173
Query: 144 AWLTDHKHIIFGFPSLVRFSWGT 166
+L ++ P R SW T
Sbjct: 174 EFLREYVEAHGELPECARASWQT 196
>gi|284164032|ref|YP_003402311.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
gi|284013687|gb|ADB59638.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
Length = 228
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 86 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 145
I AD P+V AS+VAKV RD + E + GSGYP DP T+ +
Sbjct: 138 INIEARHGADDESPIVGAASVVAKVERDAHVAALADE------YGPVGSGYPNDPNTREF 191
Query: 146 LTDHKHIIFGFPSLVRFSWGTC 167
L + P R SW TC
Sbjct: 192 LESYVGEYGDLPPCARESWSTC 213
>gi|291333356|gb|ADD93062.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C10]
Length = 830
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 86 IKFVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
++ V+SK AD+ PVV ASIVAKV RD+ + + A++ N GSGYP DP T++
Sbjct: 133 VETVISKHGADAENPVVGAASIVAKVHRDK-----VIQSIAKDRGFNVGSGYPSDPNTRS 187
Query: 145 WLTDHKHIIFGFPSL-VRFSWGTCTSHFKD 173
L + + P L +R+ W T H+ +
Sbjct: 188 ALP--RLLSQEQPDLDLRWGWKTVEKHWSE 215
>gi|448593311|ref|ZP_21652309.1| ribonuclease HII [Haloferax elongans ATCC BAA-1513]
gi|445730219|gb|ELZ81809.1| ribonuclease HII [Haloferax elongans ATCC BAA-1513]
Length = 215
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
S++ +AD + +V ASIVAKV RDR + E + + GSGYP D T+
Sbjct: 124 SVEVHAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPSDQTTRD 177
Query: 145 WLTD--HKHIIFGFPSLVRFSWGTCT 168
+L + +H I P R SW TC
Sbjct: 178 FLREFVREHGI--LPDCARKSWSTCA 201
>gi|448299120|ref|ZP_21489133.1| ribonuclease HII [Natronorubrum tibetense GA33]
gi|445588654|gb|ELY42896.1| ribonuclease HII [Natronorubrum tibetense GA33]
Length = 231
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 26 ELSAKMLNKNKINLNEIS---HDSAIGLITRVLNIGILLTEVY------LDTVGDAEKYQ 76
E++ ++ + ++N ++ H AIG L+ L ++ DT DA+++
Sbjct: 64 EITTARIDDPETDMNSLAVAAHAEAIGSALEGLDDNALESDSIAGLCDACDT--DADRFA 121
Query: 77 AKLSQRFPSIKFVVSKK----------ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 126
++SQ ++ + + AD +V ASIVAKV RD + I EE
Sbjct: 122 RRVSQACSAVSSLEAPTDALEIDARHGADDDSKIVGAASIVAKVERDAHV-AAIAEE--- 177
Query: 127 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+ GSGYP DP T+ +L + P R SW TC
Sbjct: 178 --YGPVGSGYPSDPNTREFLETYVDEHATLPPFARESWSTC 216
>gi|448610387|ref|ZP_21661133.1| ribonuclease HII [Haloferax mucosum ATCC BAA-1512]
gi|445745011|gb|ELZ96481.1| ribonuclease HII [Haloferax mucosum ATCC BAA-1512]
Length = 215
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 79 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 138
L++ S+ +AD + +V ASIVAKV RDR + E + + GSGYP
Sbjct: 118 LAETGLSVDVHAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGAVGSGYPS 171
Query: 139 DPETKAWLTD--HKHIIFGFPSLVRFSWGTCT 168
D T+ +L + +H I P R SW TC
Sbjct: 172 DQTTRDFLREFVREHGI--LPDCARKSWATCA 201
>gi|389847511|ref|YP_006349750.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|448617289|ref|ZP_21665944.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|388244817|gb|AFK19763.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|445748638|gb|EMA00085.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
Length = 215
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 144
S++ +AD + +V ASIVAKV RDR + I +E E GSGYP D T+
Sbjct: 124 SVEVHAQHRADDEHAIVGAASIVAKVERDRRV-AAIADEYGE-----VGSGYPSDQTTRD 177
Query: 145 WLTD--HKHIIFGFPSLVRFSWGTCT 168
+L + +H I P R SW TC
Sbjct: 178 FLREFVREHGI--LPDCARKSWSTCA 201
>gi|448584728|ref|ZP_21647471.1| ribonuclease HII [Haloferax gibbonsii ATCC 33959]
gi|445727582|gb|ELZ79192.1| ribonuclease HII [Haloferax gibbonsii ATCC 33959]
Length = 215
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 79 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 138
L++ ++ +AD + +V ASIVAKV RDR + EE A + + GSGYP
Sbjct: 118 LAEAGVEVEVHAQHRADDEHAIVGAASIVAKVERDRRV-----EEIAAS-YGEVGSGYPS 171
Query: 139 DPETKAWLTDH--KHIIFGFPSLVRFSWGTCT 168
D T+ +L ++ +H I P R SW TC
Sbjct: 172 DGTTREFLREYVREHGI--LPDCARKSWSTCA 201
>gi|448547399|ref|ZP_21626877.1| ribonuclease HII [Haloferax sp. ATCC BAA-645]
gi|445716410|gb|ELZ68154.1| ribonuclease HII [Haloferax sp. ATCC BAA-645]
Length = 215
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ + L++ ++ +AD + +V ASIVAKV RDR + E + + G
Sbjct: 113 RVREGLAEAGVPVEVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVG 166
Query: 134 SGYPGDPETKAWLTDH--KHIIFGFPSLVRFSWGTCT 168
SGYP D T+ +L ++ +H I P R SW TC
Sbjct: 167 SGYPSDGTTREFLREYVREHGI--LPDCARKSWSTCA 201
>gi|397775767|ref|YP_006543313.1| ribonuclease HII [Natrinema sp. J7-2]
gi|397684860|gb|AFO59237.1| ribonuclease HII [Natrinema sp. J7-2]
Length = 222
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 71 DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
DA+++ +++ P + AD P+V ASI+AKV RD + E +
Sbjct: 116 DADRFARRVADACPLEVDVDARHGADDDAPLVGAASIIAKVNRDAHVAALADE------Y 169
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GSGYP D T+ +L + P R SW TC
Sbjct: 170 GPIGSGYPSDATTREFLASYVDEHGSLPPFARASWSTC 207
>gi|448394694|ref|ZP_21568366.1| ribonuclease HII [Haloterrigena salina JCM 13891]
gi|445662155|gb|ELZ14928.1| ribonuclease HII [Haloterrigena salina JCM 13891]
Length = 247
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 94 ADSLYPVVSGASIVAKVTRDR---TLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHK 150
AD P+V AS+VAKV RD L I E + + GSGYP DP T+ +L +
Sbjct: 162 ADDESPIVGAASVVAKVERDAHVAALADRIDE------YESVGSGYPSDPNTREFLASYV 215
Query: 151 HIIFGFPSLVRFSWGTC 167
P R SW TC
Sbjct: 216 DERGELPPFARESWSTC 232
>gi|448545094|ref|ZP_21625837.1| ribonuclease HII, partial [Haloferax sp. ATCC BAA-646]
gi|445704612|gb|ELZ56524.1| ribonuclease HII, partial [Haloferax sp. ATCC BAA-646]
Length = 99
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 79 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 138
L++ ++ +AD + +V ASIVAKV RDR + E + + GSGYP
Sbjct: 2 LAEAGVPVEVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPS 55
Query: 139 DPETKAWLTDH--KHIIFGFPSLVRFSWGTCT 168
D T+ +L ++ +H I P R SW TC
Sbjct: 56 DGTTREFLREYVREHGI--LPDCARKSWSTCA 85
>gi|340345418|ref|ZP_08668550.1| Ribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520559|gb|EGP94282.1| Ribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 215
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF--GSGYPGDPETKAWLTDHKH 151
ADS + VVS ASI+AKVTRDR + + +N+ GSGYP D +T ++ +
Sbjct: 140 ADSRFIVVSAASIIAKVTRDRAIL---------KLRKNYDLGSGYPSDSKTIDFVASYYK 190
Query: 152 IIFGFPSLVRFSW 164
I P VR SW
Sbjct: 191 INQVLPIFVRKSW 203
>gi|448490375|ref|ZP_21607963.1| ribonuclease HII [Halorubrum californiensis DSM 19288]
gi|445693979|gb|ELZ46117.1| ribonuclease HII [Halorubrum californiensis DSM 19288]
Length = 236
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 83 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 142
P++ + AD PVV AS+VAK R + A + + GSGYP DP T
Sbjct: 140 LPAVDVTAAHGADGDDPVVGAASVVAKTVR---DAAMADIDAAYPDYDDLGSGYPSDPAT 196
Query: 143 K----AWLTDHKHIIFGFPSLVRFSWGTC 167
+ A++ DH+ + P R SW TC
Sbjct: 197 RSFLAAYVGDHETL----PDCARTSWSTC 221
>gi|448290099|ref|ZP_21481254.1| ribonuclease HII [Haloferax volcanii DS2]
gi|445580354|gb|ELY34738.1| ribonuclease HII [Haloferax volcanii DS2]
Length = 92
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 93 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHI 152
+AD + +V ASIVAKV RDR + I +E E GSGYP D T+ +L ++
Sbjct: 9 RADDEHAIVGAASIVAKVERDRRVEA-IADEYGE-----VGSGYPSDGTTREFLREYVRD 62
Query: 153 IFGFPSLVRFSWGTCT 168
P R SW TC
Sbjct: 63 HGILPDCARKSWSTCA 78
>gi|171184725|ref|YP_001793644.1| ribonuclease HII [Pyrobaculum neutrophilum V24Sta]
gi|254807995|sp|B1YB67.1|RNH2_THENV RecName: Full=Ribonuclease HII; Short=RNase HII
gi|170933937|gb|ACB39198.1| ribonuclease HII [Pyrobaculum neutrophilum V24Sta]
Length = 198
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
D +Y + L F + + VV+ P V+ ASIVAKV RDR L + +E
Sbjct: 109 DPRRYGSALE--FITGRRVVAMHKGESVPQVAAASIVAKVVRDR-LVALLKKEVG----- 160
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
+FGSGYP DP T+ WL + P VR+SW T
Sbjct: 161 DFGSGYPSDPRTREWLKWGRLP----PECVRWSWRT 192
>gi|149037819|gb|EDL92179.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
gi|149037822|gb|EDL92182.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
Length = 158
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 63
GWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+
Sbjct: 91 GWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQ 138
>gi|448738065|ref|ZP_21720096.1| ribonuclease HII [Halococcus thailandensis JCM 13552]
gi|445802649|gb|EMA52953.1| ribonuclease HII [Halococcus thailandensis JCM 13552]
Length = 208
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 26 ELSAKMLNKNKIN-LNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKL-SQRF 83
E++A ++ ++N L + AI T + G++ DT DA ++ ++ ++
Sbjct: 61 EITASEIDDGRLNALTVAAMADAIDRATATGDSGVVDA---CDT--DAARFGRRVRAETT 115
Query: 84 PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETK 143
++ AD + V ASIVAKV RD + E H GSGYPGD T+
Sbjct: 116 TDVELAAEHGADESHDHVGAASIVAKVARDEHVADLAAE------HGAIGSGYPGDSSTR 169
Query: 144 AWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 181
+L ++ P R SW T +D++E +S
Sbjct: 170 KFLREYVREHGDLPPFARESWKTS----RDVLEAADQS 203
>gi|48478335|ref|YP_024041.1| ribonuclease HII [Picrophilus torridus DSM 9790]
gi|73917829|sp|Q6KZK4.1|RNH2_PICTO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|48430983|gb|AAT43848.1| ribonuclease HII [Picrophilus torridus DSM 9790]
Length = 199
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLS 80
II+P E+ + K +LN + A LI + ++Y+D E ++
Sbjct: 59 IINPAEIDDAV---KKHSLNNLEEQYAEKLILKAE-----CEKIYIDCFDVNESRLERIL 110
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
+ + + AD +VS ASI+AKV RD + E ++++ +FGSGYP DP
Sbjct: 111 KDRTGKEVICRHHADRDIKIVSAASIIAKVLRDNEI------EKLKSIYGDFGSGYPSDP 164
Query: 141 ETKAWLTDHKHIIF---GFPSLVRFSWGTCTSHFKDIVE 176
+T +L +H I ++VR W T +K++V+
Sbjct: 165 KTLRFL---EHSIINHDNIDNIVRKEWKT----YKNLVQ 196
>gi|448566780|ref|ZP_21637035.1| ribonuclease HII [Haloferax prahovense DSM 18310]
gi|445713369|gb|ELZ65146.1| ribonuclease HII [Haloferax prahovense DSM 18310]
Length = 215
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 86 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 145
++ +AD + +V ASIVAKV RDR + EE A + GSGYP D T+ +
Sbjct: 125 VEVHAQHRADDEHAIVGAASIVAKVERDRRV-----EEIA-AAYGEVGSGYPSDGTTRKF 178
Query: 146 LTDH--KHIIFGFPSLVRFSWGTCT 168
L ++ +H I P R SW TC
Sbjct: 179 LREYVREHGI--LPDCARKSWSTCA 201
>gi|374632053|ref|ZP_09704427.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Metallosphaera
yellowstonensis MK1]
gi|373525883|gb|EHP70663.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Metallosphaera
yellowstonensis MK1]
Length = 212
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA-----EKYQAKLSQRFPSIKFVVSK 92
NLNE+++ + + R L+ + V +D VG E Y+ L P++ +
Sbjct: 76 NLNELTYRKVLE-VMRALS-AFPIDTVTVDRVGKEVEVIEEIYRLGLR---PNVVY---- 126
Query: 93 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHI 152
AD + S ASIVAKV RDR I E E + +FGSGYP DP+T+ W+
Sbjct: 127 HADENFLEASAASIVAKVVRDR-----IVLELREQ-YGDFGSGYPSDPKTRKWVERLAKE 180
Query: 153 IFGFPSLVRFSW 164
P+++R +W
Sbjct: 181 GKPPPTIIRRTW 192
>gi|145590574|ref|YP_001152576.1| ribonuclease HII [Pyrobaculum arsenaticum DSM 13514]
gi|189043645|sp|A4WHQ7.1|RNH2_PYRAR RecName: Full=Ribonuclease HII; Short=RNase HII
gi|145282342|gb|ABP49924.1| RNase HII [Pyrobaculum arsenaticum DSM 13514]
Length = 198
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 35/123 (28%)
Query: 74 KYQAKLSQRFPS------------------IKFVVSKKADSLY-----PVVSGASIVAKV 110
KY AKL + P+ + F+ ++ SL+ P V+ ASIVAKV
Sbjct: 87 KYAAKLMELCPADLYYVDSPDVKAARFGDGLSFLTGRRVVSLHKGEAVPQVAAASIVAKV 146
Query: 111 TRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTS 169
RDR + E +FGSGYP D +T+ WL + P VR+SW T
Sbjct: 147 VRDRLV------EMLRKEVGDFGSGYPSDRKTREWLRGGR-----IPHECVRWSWETVGK 195
Query: 170 HFK 172
FK
Sbjct: 196 LFK 198
>gi|336255000|ref|YP_004598107.1| ribonuclease HII [Halopiger xanaduensis SH-6]
gi|335338989|gb|AEH38228.1| ribonuclease HII [Halopiger xanaduensis SH-6]
Length = 233
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
AD +V ASIVAKV RD + I EE + N GSGYP DP T+ +L +
Sbjct: 151 ADDDSTLVGAASIVAKVERDAHIEA-IGEE-----YGNVGSGYPSDPTTRDFLESYVDEH 204
Query: 154 FGFPSLVRFSWGTC 167
P R SW TC
Sbjct: 205 GELPPFARESWSTC 218
>gi|379005051|ref|YP_005260723.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Pyrobaculum
oguniense TE7]
gi|375160504|gb|AFA40116.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Pyrobaculum
oguniense TE7]
Length = 198
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 35/123 (28%)
Query: 74 KYQAKLSQRFPS------------------IKFVVSKKADSLY-----PVVSGASIVAKV 110
KY AKL + P+ + F+ ++ SL+ P V+ ASIVAKV
Sbjct: 87 KYAAKLMELCPADLYYVDSPDVKAARFGDGLSFLTGRRVVSLHKGEAVPQVAAASIVAKV 146
Query: 111 TRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTS 169
RDR + E +FGSGYP D +T+ WL + P VR+SW T
Sbjct: 147 VRDRLV------EMLRKEVGDFGSGYPSDRKTREWLRAGR-----IPHECVRWSWETVGK 195
Query: 170 HFK 172
FK
Sbjct: 196 LFK 198
>gi|448327673|ref|ZP_21516995.1| ribonuclease HII [Natrinema versiforme JCM 10478]
gi|445617302|gb|ELY70900.1| ribonuclease HII [Natrinema versiforme JCM 10478]
Length = 223
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 71 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
DA+++ +++ + V + AD +V ASI+AKV RD + + E
Sbjct: 116 DADRFARRVADACSLERLAVDARHGADDDSLLVGAASIIAKVERDAHMAAFADE------ 169
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 180
+ GSGYPGD T+ +L + P R SW TC D + E
Sbjct: 170 YGPVGSGYPGDSTTREFLASYVDEHRELPPFARASWSTCEDALADAEQTGLE 221
>gi|110668982|ref|YP_658793.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790]
gi|109626729|emb|CAJ53196.1| ribonuclease H, type 2 [Haloquadratum walsbyi DSM 16790]
Length = 231
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRNFGSGYPGDPETKAWLTDHKH 151
AD P+V+ ASI+AK RD + +E T GSGYP D +T+A+L +
Sbjct: 146 ADEDDPLVAAASIIAKARRDEQITALAKEYETTGP-----IGSGYPSDQKTRAFLRRYIR 200
Query: 152 IIFGFPSLVRFSWGTCTSHFKDIVEVLWES 181
P+ R SW T DIVE + +S
Sbjct: 201 TNGKVPACARRSWAT----VDDIVESIEQS 226
>gi|328865315|gb|EGG13701.1| hypothetical protein DFA_11462 [Dictyostelium fasciculatum]
Length = 665
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 64 VYLDTV-GDAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 121
V +D++ +++K+ L QR+ +V + KAD Y + ASIVAKVTRD+ +
Sbjct: 386 VEIDSIESNSQKFSYPLRQRYAGFANIVCEIKADMTYTSTAAASIVAKVTRDKYI----- 440
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTD-HKHIIFGFPSLVRFSWGTCTS 169
E + G GYP D T +++ ++ F P VR SW T +S
Sbjct: 441 ENLQSQVGEPIGCGYPSDETTLSFIDRFYRANAFDHPE-VRQSWKTISS 488
>gi|20093626|ref|NP_613473.1| ribonuclease HII [Methanopyrus kandleri AV19]
gi|74561281|sp|Q8TYV5.1|RNH2_METKA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|19886492|gb|AAM01403.1| Ribonuclease HII [Methanopyrus kandleri AV19]
Length = 210
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 63 EVYLDTVGDAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 121
EV LD G+ + + P I + ++AD+ Y VVS ASIVAK RD WI
Sbjct: 95 EVILDKPGNYSPERLRRELDLPEGINLIAEERADAKYEVVSAASIVAKTYRD-----WIV 149
Query: 122 EETAENMHRNFGSGYPGDPET 142
E + GSGYP DP T
Sbjct: 150 -RLLELEYGEVGSGYPSDPRT 169
>gi|327311983|ref|YP_004338880.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
gi|326948462|gb|AEA13568.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
Length = 203
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 65 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 124
Y+D+ + ++L R + V KA+ + P V+ ASIVAKV RDR + +
Sbjct: 100 YVDSPDPKPERFSELLSRMSGRRVVAMNKAERV-PQVAAASIVAKVVRDRLV------DM 152
Query: 125 AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
+ +FGSGYP D +T + L K + +R SWGT
Sbjct: 153 LRSEMGDFGSGYPSDSKTISALRSGKIAV----ECIRHSWGT 190
>gi|424814493|ref|ZP_18239671.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalina sp.
J07AB43]
gi|339758109|gb|EGQ43366.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalina sp.
J07AB43]
Length = 219
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 17/105 (16%)
Query: 71 DAEKYQAKLSQRFPS----IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 126
DAE++ K+ + S ++F AD +PVVS ASIVAK R E E
Sbjct: 109 DAEEFIGKIKKSMNSDNTDMEFKAEHGADDSFPVVSAASIVAKSAR---------ESHVE 159
Query: 127 NMHRNFG----SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
+H +G SGYP D T +L + P R SW T
Sbjct: 160 GLHSKYGYDFASGYPHDKPTITFLERYLDQEGDLPPETRRSWSTA 204
>gi|355571207|ref|ZP_09042459.1| ribonuclease HII [Methanolinea tarda NOBI-1]
gi|354825595|gb|EHF09817.1| ribonuclease HII [Methanolinea tarda NOBI-1]
Length = 211
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAE 73
F AV + P E+ + + N L SH + I ++ + + +D +A
Sbjct: 57 FPVAVLSLSPAEIDGRGIGLN--TLIARSHAAVISMLAPSVAV--------VDACDVNAS 106
Query: 74 KYQAKLSQRFPSI--KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR- 130
+Y ++ F S+ + V AD +P VS ASIVAKV RD + +H
Sbjct: 107 RYGGMVTG-FLSVPCRVVSCHHADRQHPAVSAASIVAKVERDSMI---------HRLHDE 156
Query: 131 --NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
+FGSGYP DP T +L + P + R SW T
Sbjct: 157 WGSFGSGYPSDPVTIRFLERYLEEKGEIPPIARKSWET 194
>gi|18312482|ref|NP_559149.1| ribonuclease HII [Pyrobaculum aerophilum str. IM2]
gi|74564756|sp|Q8ZXL6.1|RNH2_PYRAE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|18159942|gb|AAL63331.1| ribonuclease HII (rnhB) [Pyrobaculum aerophilum str. IM2]
Length = 212
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLS 80
+I+P E+ A +++ +N E+ + + + I + E Y D + +
Sbjct: 63 VIEPAEIDA-YVSRGMLNALELKYTAQL--------INLCPAEYYYVDSPDVNPKRYESG 113
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
F + K V++ P V+ ASIVAKV RDR ++ + +E +FGSGYP DP
Sbjct: 114 LVFATGKRVIALHKGEAVPQVAAASIVAKVVRDRLIQ-LLKKEVG-----DFGSGYPSDP 167
Query: 141 ETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF 171
T L + + PS +R+ W T
Sbjct: 168 RTLQRLREGR-----MPSECIRWQWKTVGGRI 194
>gi|393795311|ref|ZP_10378675.1| ribonuclease HII [Candidatus Nitrosoarchaeum limnia BG20]
Length = 205
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
ADS + VVS ASI+AKVTRDR E + + GSGYP D +T ++ +
Sbjct: 133 ADSRFIVVSAASIIAKVTRDR-------EIMKLRKNHDLGSGYPSDSKTIDFVKLYYKTN 185
Query: 154 FGFPSLVRFSW 164
P VR SW
Sbjct: 186 QILPVFVRKSW 196
>gi|408406045|ref|YP_006864029.1| ribonuclease HII [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408366641|gb|AFU60371.1| ribonuclease HII [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 225
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Query: 3 SEAALPKWASNPFGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIG 58
S+A P+ + FG + I D + + +N + ++L ++ A + + +IG
Sbjct: 51 SKALTPRARARLFGQIMKIAD--SVCIRKVNPVEVDDSVSLRALNRLEARVMAAVINDIG 108
Query: 59 ILLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVS-KKADSLYPVVSGASIVAKVTRDRTL 116
EVY+D + ++Y+ + Q V S AD VVS ASI+AK+TRD +
Sbjct: 109 --ADEVYVDCCDINPDRYKDYIGQHLKCSPKVHSIHHADVTNVVVSAASIIAKITRDEEI 166
Query: 117 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 164
+ + +R GSGYP D T ++ + P R SW
Sbjct: 167 K------RIRSKYRGIGSGYPSDDRTMRFIRRYVAKNGSAPEFARKSW 208
>gi|448304708|ref|ZP_21494644.1| ribonuclease HII [Natronorubrum sulfidifaciens JCM 14089]
gi|445590089|gb|ELY44310.1| ribonuclease HII [Natronorubrum sulfidifaciens JCM 14089]
Length = 219
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
AD +V ASI+AKV RD + E + GSGYP DP T+ +L +
Sbjct: 137 ADDDSTLVGAASIIAKVERDAHVAALADE------YGPVGSGYPSDPTTQTFLESYVDEH 190
Query: 154 FGFPSLVRFSWGTC 167
P R SW TC
Sbjct: 191 GDLPPCARASWSTC 204
>gi|448308426|ref|ZP_21498303.1| ribonuclease HII [Natronorubrum bangense JCM 10635]
gi|445593714|gb|ELY47883.1| ribonuclease HII [Natronorubrum bangense JCM 10635]
Length = 227
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
AD +V ASI+AKV RD + E + GSGYP DP T+ +L +
Sbjct: 145 ADDDSTLVGAASIIAKVERDAHVAALADE------YGPVGSGYPSDPTTQTFLESYVDEH 198
Query: 154 FGFPSLVRFSWGTC 167
P R SW TC
Sbjct: 199 GDLPPCARASWSTC 212
>gi|385804569|ref|YP_005840969.1| ribonuclease H, type 2 [Haloquadratum walsbyi C23]
gi|339730061|emb|CCC41372.1| ribonuclease H, type 2 [Haloquadratum walsbyi C23]
Length = 231
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFE-ETAENMHRNFGSGYPGDPETKAWLTDHKHI 152
AD P+V+ AS++AK RD + E ET + GSGYP D +T+A+L +
Sbjct: 146 ADEDDPLVAAASVIAKARRDEQITALAKEYETIGPI----GSGYPSDQKTRAFLRRYIRT 201
Query: 153 IFGFPSLVRFSWGTCTSHFKDIVEVLWES 181
P+ R SW T DIVE + +S
Sbjct: 202 NGKVPACARRSWAT----VDDIVESIEQS 226
>gi|118575753|ref|YP_875496.1| ribonuclease HII [Cenarchaeum symbiosum A]
gi|189043576|sp|A0RV25.1|RNH2_CENSY RecName: Full=Ribonuclease HII; Short=RNase HII
gi|118194274|gb|ABK77192.1| ribonuclease HII [Cenarchaeum symbiosum A]
Length = 205
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 93 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHI 152
+AD + +VS ASI+AKV RDR++ E H + GSGYP D T ++ + +
Sbjct: 131 RADDRFVIVSAASILAKVARDRSI------ERLRKSH-DVGSGYPSDRRTVGFVRGYYNK 183
Query: 153 IFGFPSLVRFSW 164
P VR SW
Sbjct: 184 NGAMPPFVRRSW 195
>gi|329766418|ref|ZP_08257962.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137017|gb|EGG41309.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 116
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
ADS + VVS ASI+AKV RDR E + + GSGYP D +T ++ +
Sbjct: 44 ADSRFIVVSAASIIAKVVRDR-------EIMKLRKNHDLGSGYPSDSKTIDFVKLYYKTN 96
Query: 154 FGFPSLVRFSW 164
P VR SW
Sbjct: 97 HILPVFVRKSW 107
>gi|452208016|ref|YP_007488138.1| ribonuclease H, type 2 [Natronomonas moolapensis 8.8.11]
gi|452084116|emb|CCQ37449.1| ribonuclease H, type 2 [Natronomonas moolapensis 8.8.11]
Length = 210
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 71 DAEKYQAKLSQRFPSIKFV-VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 129
DA ++ A++ + + + AD+ +V AS++AK R+R + + +
Sbjct: 104 DAGRFAARVEDGLGADATIDAAHGADASDSLVGAASVLAKSARERHV------ASLADRF 157
Query: 130 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GSGYP DP T+++L + FP R SW TC
Sbjct: 158 GEVGSGYPSDPTTRSFLRRYVEEHGAFPPPTRRSWSTC 195
>gi|374724762|gb|EHR76842.1| ribonuclease HII [uncultured marine group II euryarchaeote]
Length = 242
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 16 GW--AVDIIDPRELSAKMLNKNKINLNEIS-HDSAIGLITRVLNIGILLTEVYLDTVGDA 72
GW V + P + A +++ N +NL E+ A+ + + + G+ + D +A
Sbjct: 64 GWLHQVIVCPPPRIDAAVIH-NGLNLLEVELFAEALNPMRKEVEQGVQILNDACDV--NA 120
Query: 73 EKYQAKLSQRFPSIKFVVSK-----KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 127
+++ +++ R + S KAD+ + +V ASI+AKV RD I E
Sbjct: 121 QRFTDRIAARLTGWPWNQSSMTSEHKADTNHAIVGMASILAKVRRDE-----IIEALKVE 175
Query: 128 MHRNFGSGYPGDPETKAWLT-----DHKHIIFGFPSLVRFSWGTC 167
+ GSGYP DP TKA L D H +R+SW T
Sbjct: 176 IGAPIGSGYPSDPNTKAALPFLLSGDTPH------EALRWSWKTV 214
>gi|15790853|ref|NP_280677.1| ribonuclease HII [Halobacterium sp. NRC-1]
gi|169236599|ref|YP_001689799.1| ribonuclease HII [Halobacterium salinarum R1]
gi|74568991|sp|Q9HNR3.1|RNH2_HALSA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|189043604|sp|B0R6T4.1|RNH2_HALS3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|10581416|gb|AAG20157.1| RNAase H [Halobacterium sp. NRC-1]
gi|167727665|emb|CAP14453.1| ribonuclease H, type 2 [Halobacterium salinarum R1]
Length = 212
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 26 ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA--EKYQAKLSQRF 83
E+ ++ + ++N ++ + + RV+ G+ Y+D GD +++ +++ R
Sbjct: 62 EVPVDRIDDPETDMNTLTVAAQADALGRVVADGMAG---YVDA-GDVNEQRFGRRVANRV 117
Query: 84 PS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 142
+ + AD Y +V+ ASIVAKV RD + + A + GSGYP D T
Sbjct: 118 AADVAVTAEHGADDEYDLVAAASIVAKVARDAHV-----DALAAAFDADIGSGYPSDSTT 172
Query: 143 KAWLTDHKHIIFGFPSLVRFSWGT 166
+ +L + P R SW T
Sbjct: 173 REFLAAYVREHGELPECARASWQT 196
>gi|17546137|ref|NP_519539.1| ribonuclease HII [Ralstonia solanacearum GMI1000]
gi|39932439|sp|Q8XZH7.1|RNH2_RALSO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|17428433|emb|CAD15120.1| probable ribonuclease hII (rnase hII) protein [Ralstonia
solanacearum GMI1000]
Length = 236
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 134
R P + F V K D+L P +S ASI+AKVTRDR L F + ++H +G+
Sbjct: 131 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGT 187
>gi|299067473|emb|CBJ38672.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CMR15]
Length = 236
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 134
R P + F V K D+L P +S ASI+AKVTRDR L F + ++H +G+
Sbjct: 131 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGT 187
>gi|269986419|gb|EEZ92706.1| ribonuclease HII [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 218
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
+ EK + LS++ K + AD + VS ASI+AK R+R + E+ + +
Sbjct: 111 NTEKIRLYLSKKIKDKKIIAENYADKNHIEVSAASIIAKANREREV-----EKIKKELGY 165
Query: 131 NFGSGYPGDPETKAW---LTDHKHI-IFGFPSLVRFSWGTCTS 169
+FGSGYP DP+T + +T+++ I + VR +W T +
Sbjct: 166 DFGSGYPSDPKTIQFIKIITENERINQEPYKKFVRKTWNTVKN 208
>gi|344169900|emb|CCA82269.1| ribonuclease HII (RNase HII) [blood disease bacterium R229]
Length = 236
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 134
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 131 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|281205710|gb|EFA79899.1| hypothetical protein PPL_06719 [Polysphondylium pallidum PN500]
Length = 589
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 84 PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETK 143
P + +ADS Y ASI+AKV RDR + ++++ G GYP D T
Sbjct: 423 PEHTVICENQADSKYVSTGAASIIAKVERDRAIAAL-----EKSVNTPVGCGYPSDATTL 477
Query: 144 AWLTDHKHIIFGFPSLVRFSWGTCTS 169
++ + VR SW T T+
Sbjct: 478 TFIESYYQRNGNDHPDVRLSWKTLTN 503
>gi|300691590|ref|YP_003752585.1| ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
gi|299078650|emb|CBJ51308.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
Length = 242
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 134
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 137 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 193
>gi|421888303|ref|ZP_16319403.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum K60-1]
gi|378966342|emb|CCF96151.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum K60-1]
Length = 236
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 134
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 131 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|421897361|ref|ZP_16327729.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
gi|206588567|emb|CAQ35530.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
Length = 236
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 134
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 131 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|344171454|emb|CCA84066.1| ribonuclease HII (RNase HII) [Ralstonia syzygii R24]
Length = 236
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 134
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 131 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|386333599|ref|YP_006029769.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum Po82]
gi|334196048|gb|AEG69233.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum Po82]
Length = 236
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 134
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 131 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|83749784|ref|ZP_00946758.1| Ribonuclease HII [Ralstonia solanacearum UW551]
gi|207743230|ref|YP_002259622.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
IPO1609]
gi|83723541|gb|EAP70745.1| Ribonuclease HII [Ralstonia solanacearum UW551]
gi|206594627|emb|CAQ61554.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
IPO1609]
Length = 236
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 134
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 131 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|300704217|ref|YP_003745820.1| ribonuclease HII [Ralstonia solanacearum CFBP2957]
gi|299071881|emb|CBJ43210.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CFBP2957]
Length = 236
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 134
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 131 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHVAFPHYGFDVHAGYGT 187
>gi|119872804|ref|YP_930811.1| ribonuclease HII [Pyrobaculum islandicum DSM 4184]
gi|189043646|sp|A1RU36.1|RNH2_PYRIL RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119674212|gb|ABL88468.1| RNase HII [Pyrobaculum islandicum DSM 4184]
Length = 195
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 16/93 (17%)
Query: 80 SQRF-PSIKFVVSKKADSLY-----PVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
S+R+ ++ F+ ++ +L+ P V+ ASIVAKV RDR + + + +FG
Sbjct: 107 SRRYGDALSFITGRRVVALHGGESVPQVAAASIVAKVIRDRLI------DILKREIGDFG 160
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
SGYP D +T WL K + VR SW T
Sbjct: 161 SGYPSDVKTIEWLRLGKIPV----ECVRRSWRT 189
>gi|87199856|ref|YP_497113.1| ribonuclease HII [Novosphingobium aromaticivorans DSM 12444]
gi|97189114|sp|Q2G794.1|RNH2_NOVAD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|87135537|gb|ABD26279.1| RNase HII [Novosphingobium aromaticivorans DSM 12444]
Length = 196
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 76
WAV +++P E+ N ++ A+G + L + EV +D G+ +
Sbjct: 57 WAVGVVEPDEID----RLNIFGATMLAMTLAVGALCEQLAHDEDVGEVLVD--GNLTPHG 110
Query: 77 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 136
+ +P+ V D+L P +S ASI+AK RDR +R RN +GY
Sbjct: 111 RRPEWCWPARPIV---GGDALEPCISAASIIAKEHRDRLMREAALAHPHYGWERN--AGY 165
Query: 137 PGDPETKAWLTDH 149
G PE A L +H
Sbjct: 166 -GTPEHLAALREH 177
>gi|187928381|ref|YP_001898868.1| ribonuclease HII [Ralstonia pickettii 12J]
gi|238691815|sp|B2UBB5.1|RNH2_RALPJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|187725271|gb|ACD26436.1| Ribonuclease H [Ralstonia pickettii 12J]
Length = 232
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 137
R P + F V K D+L P +S ASI+AKVTRDR L E + G G P
Sbjct: 130 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIEFPLYGFDVHAGYGTP 187
>gi|339499659|ref|YP_004697694.1| ribonuclease H [Spirochaeta caldaria DSM 7334]
gi|338834008|gb|AEJ19186.1| Ribonuclease H [Spirochaeta caldaria DSM 7334]
Length = 199
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 93 KADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFGSGYPGDPETKAWLTDHK 150
KAD+L P V ASI+AK RDR + GWI+ E H+ GYP TK L +
Sbjct: 124 KADALVPEVMAASILAKTARDRMMERYGWIYPEYGYEQHK----GYP----TK--LHRAR 173
Query: 151 HIIFGFPSLVRFSW 164
+++G + R S+
Sbjct: 174 IVLYGPSPIQRMSF 187
>gi|241662957|ref|YP_002981317.1| ribonuclease HII [Ralstonia pickettii 12D]
gi|309782124|ref|ZP_07676854.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
gi|404377816|ref|ZP_10982916.1| ribonuclease HII [Ralstonia sp. 5_2_56FAA]
gi|240864984|gb|ACS62645.1| Ribonuclease H [Ralstonia pickettii 12D]
gi|308919190|gb|EFP64857.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
gi|348612883|gb|EGY62490.1| ribonuclease HII [Ralstonia sp. 5_2_56FAA]
Length = 232
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 82 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 137
R P + F V K D+L P +S ASI+AKVTRDR L E + G G P
Sbjct: 130 RCPQVAFAVEAVVKGDALVPAISAASILAKVTRDRQLAALHVEFPLYGFDVHAGYGTP 187
>gi|206901146|ref|YP_002250429.1| ribonuclease HII [Dictyoglomus thermophilum H-6-12]
gi|206740249|gb|ACI19307.1| ribonuclease HII, putative [Dictyoglomus thermophilum H-6-12]
Length = 425
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 76/153 (49%), Gaps = 16/153 (10%)
Query: 5 AALPKWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI---LL 61
+ + ++ S+ F +A+D+I PRE+ ++ N+N++ S LI R++ G+ +
Sbjct: 137 SIINRYISDVFFYAIDLIQPREI-------DRFNINQLLDLSYTKLIKRLME-GLPSGVE 188
Query: 62 TEVYLDTVGDAEKYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 119
V +D G E + L + + + +++ + ++ + V AS++AK R+R L+
Sbjct: 189 ARVVIDDYGVGEGLKKFLEKERKESNFEYIFAIDSEDKFLEVKLASLIAKAHRERILK-- 246
Query: 120 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHI 152
F + + N G + E + +L ++ +I
Sbjct: 247 -FLQEIYEIPGNLIKGNMSNKELELFLVNYSYI 278
>gi|167563174|ref|ZP_02356090.1| ribonuclease HII [Burkholderia oklahomensis EO147]
gi|167570357|ref|ZP_02363231.1| ribonuclease HII [Burkholderia oklahomensis C6786]
Length = 214
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGSGYPGDPET 142
SI+ V D+L P +S ASI+AKVTRDR L +F N+H +G+ P
Sbjct: 132 SIRSVAIVGGDALVPSISAASILAKVTRDRMLVDLHQLFPMYGFNVHAGYGT-----PRH 186
Query: 143 KAWLTDH 149
A L +H
Sbjct: 187 LAALREH 193
>gi|126459394|ref|YP_001055672.1| ribonuclease HII [Pyrobaculum calidifontis JCM 11548]
gi|126249115|gb|ABO08206.1| RNase HII [Pyrobaculum calidifontis JCM 11548]
Length = 207
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
E+Y + LS + K +V+ P V+ ASIVAKV RDR + + + +F
Sbjct: 122 ERYGSALS--MATGKRIVALNKGERVPQVAAASIVAKVVRDRLI------DLLKREVGDF 173
Query: 133 GSGYPGDPET 142
GSGYP DP T
Sbjct: 174 GSGYPSDPRT 183
>gi|212534368|ref|XP_002147340.1| Hsp70 family protein [Talaromyces marneffei ATCC 18224]
gi|210069739|gb|EEA23829.1| Hsp70 family protein [Talaromyces marneffei ATCC 18224]
Length = 606
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 22/132 (16%)
Query: 20 DIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKL 79
DI DP + ++++ +I + + S D G+I R++ +G GD+E + K+
Sbjct: 358 DIFDP--VVDQIIDLIRIQMEDASKDMEAGIINRIILVG---------GFGDSEYLRQKV 406
Query: 80 SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 139
+ F S K +++ ++ +V GA++ R L+G TA RN+G + +
Sbjct: 407 KKIFGSEKMIITVPSNPQSAIVQGAAL-------RGLQG--IRATARKCRRNYGFSW--N 455
Query: 140 PETKAWLTDHKH 151
E + + D KH
Sbjct: 456 IEFRTGIDDDKH 467
>gi|424819593|ref|ZP_18244670.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|290558916|gb|EFD92304.1| ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5]
gi|326422570|gb|EGD71965.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 218
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT----DH 149
AD + VS ASI+AK R+R + ++ + +FGSGYP DP+T +L +
Sbjct: 134 ADRNHVEVSAASILAKSEREREV-----DKIKKIFGYDFGSGYPSDPKTVEFLKIIKENG 188
Query: 150 KHIIFGFPSLVRFSWGTCTS 169
K + L+R SW T S
Sbjct: 189 KIDESPYKELIRKSWSTLQS 208
>gi|118475400|ref|YP_891226.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
gi|424819944|ref|ZP_18244982.1| Ribonuclease HII [Campylobacter fetus subsp. venerealis NCTC 10354]
gi|118414626|gb|ABK83046.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
gi|342326723|gb|EGU23207.1| Ribonuclease HII [Campylobacter fetus subsp. venerealis NCTC 10354]
Length = 189
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 132
Y +IK +V KADS P VS ASI+AKV+RDR +R + I+ + H+ +
Sbjct: 100 YDGNCDYGVKNIKTIV--KADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGY 157
Query: 133 G 133
G
Sbjct: 158 G 158
>gi|261886381|ref|ZP_06010420.1| ribonuclease HII [Campylobacter fetus subsp. venerealis str.
Azul-94]
Length = 102
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 133
+IK +V KADS P VS ASI+AKV+RDR +R + I+ + H+ +G
Sbjct: 23 NIKTIV--KADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGYG 71
>gi|51473401|ref|YP_067158.1| ribonuclease HII [Rickettsia typhi str. Wilmington]
gi|383752176|ref|YP_005427276.1| ribonuclease HII [Rickettsia typhi str. TH1527]
gi|383843012|ref|YP_005423515.1| ribonuclease HII [Rickettsia typhi str. B9991CWPP]
gi|73917831|sp|Q68XG6.1|RNH2_RICTY RecName: Full=Ribonuclease HII; Short=RNase HII
gi|51459713|gb|AAU03676.1| Endoribonuclease H [Rickettsia typhi str. Wilmington]
gi|380758819|gb|AFE54054.1| ribonuclease HII [Rickettsia typhi str. TH1527]
gi|380759659|gb|AFE54893.1| ribonuclease HII [Rickettsia typhi str. B9991CWPP]
Length = 193
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 73 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
EK + +F ++F+ D+L ++ ASI+AKVTRDR + E H+N+
Sbjct: 107 EKILVDGNMKFSDVRFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEYPQYLWHKNY 166
Query: 133 GSG 135
G G
Sbjct: 167 GYG 169
>gi|388471367|ref|ZP_10145576.1| ornithine cyclodeaminase [Pseudomonas synxantha BG33R]
gi|388008064|gb|EIK69330.1| ornithine cyclodeaminase [Pseudomonas synxantha BG33R]
Length = 348
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 18/142 (12%)
Query: 74 KYQAKLS---QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE-NMH 129
K AKL+ + FP+IK ++ ADS+ V GA IV VT D+ + +E E MH
Sbjct: 165 KATAKLAANLKAFPAIKVIL---ADSVAEAVKGADIVTTVTADKAYATILTDEMIEPGMH 221
Query: 130 RN-FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
N G PG E + + +I + R V LW+ +
Sbjct: 222 LNAVGGDCPGKTELDRRIVERARVIVEYEPQSRIEGEIQHMPEDSPVTELWQV------I 275
Query: 189 SSRRSGK---RQLKLSD-IGFS 206
+ ++ G+ RQ+ L D +GF+
Sbjct: 276 NGQKPGRENARQITLFDSVGFA 297
>gi|15604075|ref|NP_220590.1| ribonuclease HII [Rickettsia prowazekii str. Madrid E]
gi|383487047|ref|YP_005404727.1| ribonuclease HII [Rickettsia prowazekii str. GvV257]
gi|383487623|ref|YP_005405302.1| ribonuclease HII [Rickettsia prowazekii str. Chernikova]
gi|383488470|ref|YP_005406148.1| ribonuclease HII [Rickettsia prowazekii str. Katsinyian]
gi|383489312|ref|YP_005406989.1| ribonuclease HII [Rickettsia prowazekii str. Dachau]
gi|383499448|ref|YP_005412809.1| ribonuclease HII [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500287|ref|YP_005413647.1| ribonuclease HII [Rickettsia prowazekii str. RpGvF24]
gi|386082034|ref|YP_005998611.1| Ribonuclease HII [Rickettsia prowazekii str. Rp22]
gi|7227932|sp|Q9ZDW3.1|RNH2_RICPR RecName: Full=Ribonuclease HII; Short=RNase HII
gi|3860766|emb|CAA14667.1| RIBONUCLEASE HII (rnhB) [Rickettsia prowazekii str. Madrid E]
gi|292571798|gb|ADE29713.1| Ribonuclease HII [Rickettsia prowazekii str. Rp22]
gi|380757412|gb|AFE52649.1| ribonuclease HII [Rickettsia prowazekii str. GvV257]
gi|380757984|gb|AFE53220.1| ribonuclease HII [Rickettsia prowazekii str. RpGvF24]
gi|380760502|gb|AFE49024.1| ribonuclease HII [Rickettsia prowazekii str. Chernikova]
gi|380761349|gb|AFE49870.1| ribonuclease HII [Rickettsia prowazekii str. Katsinyian]
gi|380762194|gb|AFE50714.1| ribonuclease HII [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763035|gb|AFE51554.1| ribonuclease HII [Rickettsia prowazekii str. Dachau]
Length = 193
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 80 SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
+ +F I+F+ D+L ++ ASI+AKVTRDR + E H+N+G G
Sbjct: 114 NMKFSDIRFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEFPQYLWHKNYGYG 169
>gi|385805443|ref|YP_005841841.1| Ribonuclease HII (rnhB) [Fervidicoccus fontis Kam940]
gi|383795306|gb|AFH42389.1| Ribonuclease HII (rnhB) [Fervidicoccus fontis Kam940]
Length = 200
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 12/68 (17%)
Query: 85 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF---GSGYPGDPE 141
+I+ +V KKAD + V+ ASIVAKV RDR L E + NF GSGYPGD +
Sbjct: 124 NIEQLVLKKADENFIAVAAASIVAKVQRDRAL---------EQIRNNFGLIGSGYPGDKK 174
Query: 142 TKAWLTDH 149
+ WL H
Sbjct: 175 SVEWLKLH 182
>gi|33519750|ref|NP_878582.1| ribonuclease HII [Candidatus Blochmannia floridanus]
gi|39932315|sp|Q7VRD2.1|RNH2_BLOFL RecName: Full=Ribonuclease HII; Short=RNase HII
gi|33504095|emb|CAD83356.1| ribonuclease HII [Candidatus Blochmannia floridanus]
Length = 205
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 93 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
K DS PV+S ASI+AKVTRD+ + + HRN G
Sbjct: 132 KGDSRIPVISAASIIAKVTRDQAMMMLHTQYPKYGFHRNKG 172
>gi|398347238|ref|ZP_10531941.1| ribonuclease H [Leptospira broomii str. 5399]
Length = 221
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 82 RFPSIKFVVSK-----KADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRNFGS 134
++P KF+ SK K DS +S ASI+AKVTRDR ++G F H+ +GS
Sbjct: 137 KYPESKFISSKSHYYTKGDSRIVSISAASIIAKVTRDRWMKGIAGKFPGYGFESHKGYGS 196
>gi|34558029|ref|NP_907844.1| ribonuclease HII RNase HII [Wolinella succinogenes DSM 1740]
gi|34483747|emb|CAE10744.1| RIBONUCLEASE HII RNASE HII [Wolinella succinogenes]
Length = 183
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
Query: 28 SAKMLNKNKINL-NEISHDSAIGLI------TRVLNIGILLTEVYLD--TVGDAEKYQAK 78
S K+ KN+ L +EI +++ ++ L +GI L E L+ T A+ Y
Sbjct: 35 SKKLSKKNRFRLYDEIVQNASFHIVESSAQKVDSLGLGICLRESILEICTQVSADSYIMD 94
Query: 79 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 138
+ F + DSL P +S ASI+AK ++DR + E + +H +G
Sbjct: 95 GNTSFGVQGVETLIRGDSLLPCISAASILAKASKDREM------ERLDRLHPEYGFAKHC 148
Query: 139 DPETKAWLTDHKHIIFGFPSLVRFSW 164
TKA L H+ G+ R S+
Sbjct: 149 GYGTKAHLEAILHL--GYSPFHRQSF 172
>gi|149183639|ref|ZP_01862056.1| ribonuclease HII [Bacillus sp. SG-1]
gi|148848656|gb|EDL62889.1| ribonuclease HII [Bacillus sp. SG-1]
Length = 258
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
W+ II P+E+ +++N+ + S + ++T + + + + +D +
Sbjct: 129 IAWSTGIISPQEI-------DELNIYQASKKA---MVTALNTLNVKPDHLLIDAM----- 173
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
+L +P + + K D+ ++ ASIVAKVTRDR + + + + +N G
Sbjct: 174 ---ELGSPYPEMSLI---KGDARSISIAAASIVAKVTRDRMMEEYSQVYSGYGLEKNMGY 227
Query: 135 G 135
G
Sbjct: 228 G 228
>gi|88608875|ref|YP_506577.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama]
gi|123491623|sp|Q2GD69.1|RNH2_NEOSM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|88601044|gb|ABD46512.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama]
Length = 195
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 67 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 126
D + +A KY+ +K VVS D +Y + ASIVAKVTRDR + G + T
Sbjct: 107 DIINNAAKYK--------EVKSVVS--GDKIYGEIKAASIVAKVTRDRLMEG--LDLTYP 154
Query: 127 NMHRNFGSGYPGDPE-----TKAWLTDH 149
F GY G E K +TDH
Sbjct: 155 YYRWKFNKGY-GTKEHLEALAKYGVTDH 181
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,728,868,027
Number of Sequences: 23463169
Number of extensions: 148372461
Number of successful extensions: 366515
Number of sequences better than 100.0: 682
Number of HSP's better than 100.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 170
Number of HSP's that attempted gapping in prelim test: 365291
Number of HSP's gapped (non-prelim): 736
length of query: 237
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 99
effective length of database: 9,121,278,045
effective search space: 903006526455
effective search space used: 903006526455
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)