BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026552
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEZ6|RNH2A_ARATH Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2
SV=2
Length = 296
Score = 351 bits (901), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 165/223 (73%), Positives = 193/223 (86%), Gaps = 1/223 (0%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+LLTE YLDTVGD +K
Sbjct: 75 LGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDK 134
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
Y+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+ EET E+++RNFGS
Sbjct: 135 YRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGS 194
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSG 194
GYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K VEV WE+DE +E+ + S
Sbjct: 195 GYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADE-NEESGNGSSS 253
Query: 195 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
KRQ KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT F
Sbjct: 254 KRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 296
>sp|Q9VPP5|RNH2A_DROME Ribonuclease H2 subunit A OS=Drosophila melanogaster GN=CG13690
PE=2 SV=1
Length = 347
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 10/229 (4%)
Query: 9 KWASNPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 68
++A++ GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 129 EYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDT 188
Query: 69 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 128
VG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 189 VGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIK 248
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 188
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 249 DNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE- 306
Query: 189 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 237
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 307 KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>sp|Q9CWY8|RNH2A_MOUSE Ribonuclease H2 subunit A OS=Mus musculus GN=Rnaseh2a PE=1 SV=2
Length = 301
Score = 188 bits (477), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 120/181 (66%), Gaps = 3/181 (1%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRRSG 194
YP DP+TKAWL H +FGFP VRFSW T + K+ +V+WE E +ED R G
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED--PERPG 268
Query: 195 K 195
K
Sbjct: 269 K 269
>sp|Q5U209|RNH2A_RAT Ribonuclease H2 subunit A OS=Rattus norvegicus GN=Rnaseh2a PE=2
SV=1
Length = 301
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG E Y
Sbjct: 91 GWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + ++GSG
Sbjct: 151 QARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 187
YP DP+TKAWL H +FGFP VRFSW T + K+ V WE +ED
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTWEDSAAEED 263
>sp|O75792|RNH2A_HUMAN Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2
Length = 299
Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E Y
Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
QA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 150 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSG 209
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 180
YP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE
Sbjct: 210 YPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>sp|Q2TBT5|RNH2A_BOVIN Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2A PE=1 SV=1
Length = 299
Score = 180 bits (457), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
GWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG E Y
Sbjct: 91 GWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPETY 150
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
Q +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSG
Sbjct: 151 QERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSG 210
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDE 183
YP DP+TKAWL H +FGFP VRFSW T S + E V WE E
Sbjct: 211 YPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILESEAEDVKWEDSE 259
>sp|Q54D13|RNH2A_DICDI Ribonuclease H2 subunit A OS=Dictyostelium discoideum GN=rnaseh2A
PE=3 SV=1
Length = 289
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 118/193 (61%), Gaps = 9/193 (4%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
+ D+I LS KML K I+LN ISH+SAIGLI VL G+ + E+YLDTVG +K
Sbjct: 82 LAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVGPPDK 141
Query: 75 YQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-----ETAENM 128
YQ L + FP I K +VSKKADSLYP+VS ASI AKV RD + F+ + E +
Sbjct: 142 YQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQDEQL 201
Query: 129 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI---VEVLWESDEMD 185
+FGSGYP DP +K WL ++ +FG+P+ +RFSW T + + V+ + E+D++
Sbjct: 202 STDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTTETAMRGACFGVDWVLENDKLK 261
Query: 186 EDVSSRRSGKRQL 198
+ ++ K++
Sbjct: 262 QHFQENQNDKKRF 274
>sp|Q9U6P6|RNH2A_CAEEL Ribonuclease H2 subunit A OS=Caenorhabditis elegans GN=rnh-2 PE=2
SV=1
Length = 297
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Query: 15 FGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
+A+ + P +S ML + K +LNE+SH++AI LI L + + E+ +DTVG
Sbjct: 86 IAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTVGPKAT 145
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENMHRNFG 133
YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F E+ + +G
Sbjct: 146 YQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIKVPDAGYG 205
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 192
SGYPGDP TK +L +FGF SLVR SW T ++ K V WE DE + S+R
Sbjct: 206 SGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTIVEKRCVPGSWEDDEEEGKSQSKR 265
>sp|Q10236|RNH2A_SCHPO Ribonuclease H2 subunit A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rnh201 PE=3 SV=1
Length = 326
Score = 127 bits (318), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 99/166 (59%), Gaps = 14/166 (8%)
Query: 16 GWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 74
GW+ I REL+A ML +NK NLN +HD+ I LI +V GI +TE+Y+DTVG
Sbjct: 128 GWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPIS 187
Query: 75 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR--NF 132
YQ KL FP K V+KKADSL+P+VS ASI AKVTRD L E A R N+
Sbjct: 188 YQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL------ECARESIRTENW 241
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIVEV 177
GSGY D T WL + IFG+ +VR+SW T KD++E+
Sbjct: 242 GSGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTA----KDLLEL 283
>sp|P53942|RNH2A_YEAST Ribonuclease H2 subunit A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RNH201 PE=1 SV=1
Length = 307
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 115/205 (56%), Gaps = 14/205 (6%)
Query: 15 FGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 71
G+A I P ++S +K NLNE +HD + LI V+ + L+ VY+DTVG
Sbjct: 100 IGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKLSHVYVDTVGP 159
Query: 72 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 131
YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E +
Sbjct: 160 PASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRDPDEI 214
Query: 132 FGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVLWESDEMDE 186
GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D + + WE MD
Sbjct: 215 LGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKNSIPIKWEEQYMDS 274
Query: 187 DVSSRRSGKRQLKLSDIGFSSSKRR 211
++ + K QL+L + ++R
Sbjct: 275 RKNAAQKTK-QLQLQMVAKPVRRKR 298
>sp|Q9P5X8|RNH2A_NEUCR Ribonuclease H2 subunit A OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rnh-201 PE=3 SV=1
Length = 317
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 86/139 (61%), Gaps = 9/139 (6%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSL 97
NLN+ + D+ I LI + G+ +T++++DT+G YQ KL + FP+ K V+KKADSL
Sbjct: 137 NLNQQAMDATIALIKGIYERGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSL 196
Query: 98 YPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP 157
YPVVS AS+VAKVTRD L E + +GSGYP D + +WL + H +FG+
Sbjct: 197 YPVVSAASVVAKVTRDIAL-----EVLWADRTMAWGSGYPSDSKCVSWLKQNMHPVFGWG 251
Query: 158 SLVRFSWGTCTSHFKDIVE 176
RFSWGT KD++E
Sbjct: 252 PECRFSWGTA----KDMLE 266
>sp|A6VGW0|RNH2_METM7 Ribonuclease HII OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=rnhB PE=3 SV=1
Length = 239
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 27/166 (16%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---VYLDTVGDAEK--- 74
+IDP ++ +M INLN+I +G +++ N I E +Y+D E+
Sbjct: 83 VIDPEKIDEQM---EIINLNKIE----LGAFSKLANHFIKENENISIYIDACSSNEQSFS 135
Query: 75 --YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHR 130
++AKL + +++ + KAD Y +VS ASI+AKVTRD + + IF E
Sbjct: 136 NQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKEIFGE------- 186
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
GSGYP DP+TK +L ++ H G P + R SW T + K+I E
Sbjct: 187 -IGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEIEE 231
>sp|A2BL34|RNH2_HYPBU Ribonuclease HII OS=Hyperthermus butylicus (strain DSM 5456 / JCM
9403) GN=rnhB PE=3 SV=1
Length = 240
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 35 NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKA 94
+ +NLN++ ++ + +R+ + VY+D VG EK A+LS R ++ + A
Sbjct: 80 DAVNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEKLAARLSGRL-GVRVIAEPGA 138
Query: 95 DSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT-DHKHII 153
D YP+VS ASIVAKV RD +R ++ GSGYP DPET AWL +++
Sbjct: 139 DKTYPIVSAASIVAKVVRDAEIR------MLRRLYGVRGSGYPTDPETIAWLAEEYRRNP 192
Query: 154 FGFPSLVRFSWGT 166
P VR +W T
Sbjct: 193 ANPPWFVRRTWST 205
>sp|A4FWE5|RNH2_METM5 Ribonuclease HII OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=rnhB PE=3 SV=1
Length = 239
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 23/164 (14%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---VYLDTVGDAEK--- 74
+I+P ++ +M INLN+I +G +++ N I E +Y+D E+
Sbjct: 83 VINPEKIDEQM---EIINLNKIE----LGAFSKLANHFIKENENISIYIDACSSNEQSFS 135
Query: 75 --YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 132
++AKL + +++ + KAD Y +VS ASI+AKVTRD + E +
Sbjct: 136 NQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKKTFGEI 187
Query: 133 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
GSGYP DP+TK +L ++ H G P + R SW T + K+I E
Sbjct: 188 GSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEIEE 231
>sp|Q6LXH7|RNH2_METMP Ribonuclease HII OS=Methanococcus maripaludis (strain S2 / LL)
GN=rnhB PE=3 SV=1
Length = 242
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 21/163 (12%)
Query: 21 IIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK---- 74
+IDP + +M +N NKI L+ S S I NI I Y+D +E+
Sbjct: 86 VIDPETIDKQMEIINLNKIELSAFSKLSN-HFIRENDNISI-----YIDACSSSEQSFSN 139
Query: 75 -YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
++AKL + +++ + KAD Y +VS ASI+AKVTRDR + EE E G
Sbjct: 140 QFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-----VIEEYKETFGE-IG 191
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
SGYP DP+TK +L ++ + P + R SW T + K+I E
Sbjct: 192 SGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSKNLLKEIEE 234
>sp|Q0W5R8|RNH2_UNCMA Ribonuclease HII OS=Uncultured methanogenic archaeon RC-I GN=rnhB
PE=3 SV=1
Length = 224
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 13 NPFGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-D 71
N + + + ++ P+E+ A+ +++ NLN + + GLI T YLD +
Sbjct: 64 NKYKYELSVLPPQEIDARFESED--NLNRLEVNCFAGLIRSAKP-----TIAYLDACDVN 116
Query: 72 AEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
AE++ + + ++ V + +ADS YP+VS ASI+AKV RD +R E +E M
Sbjct: 117 AERFGINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIR-----EISEKMGE 171
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
+ GSGYP DP T ++L ++ P R SW T + D ++
Sbjct: 172 DVGSGYPADPVTISFLKNYYMKHKCLPDCARKSWKTSNAVIADCLQ 217
>sp|A9A9T9|RNH2_METM6 Ribonuclease HII OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=rnhB PE=3 SV=1
Length = 239
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 21 IIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAK 78
+I P ++ +M N NKI L+ S A I NI I + + + +++AK
Sbjct: 83 VIAPEKIDEQMEITNLNKIELSAFSK-LANHFIKENENISIYIDACSSNEQSFSNQFKAK 141
Query: 79 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 138
L + +++ + KAD Y +VS ASI+AKVTRD + E + GSGYP
Sbjct: 142 LINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKKTFGEIGSGYPS 193
Query: 139 DPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 176
DP+TK +L + H G P + R SW T + K+I E
Sbjct: 194 DPKTKKFLKKYVHENKGLPKIARKSWATSKNLLKEIEE 231
>sp|Q57599|RNH2_METJA Ribonuclease HII OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rnhB PE=1 SV=1
Length = 230
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 27/178 (15%)
Query: 5 AALPKWASNPFGWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIG 58
A L K N G+ ++ R L A+ +N+ N INLN+I ++ A LI + LNI
Sbjct: 50 AYLKKLLEN-LGY----VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEK-LNIR 103
Query: 59 ILLTEVYLDTVGD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 109
E+Y+D +K + + +R +IK + KAD+ YPVVS ASI+AK
Sbjct: 104 DDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAK 163
Query: 110 VTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
RD + + + ++ + GSGYP DP+T +L D+ P + R W TC
Sbjct: 164 AERDEIIDYY------KKIYGDIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTC 215
>sp|Q8U036|RNH2_PYRFU Ribonuclease HII OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=rnhB PE=3 SV=1
Length = 224
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKY 75
+ + I+ P E+ + N++ + + + L L I L +Y D DA ++
Sbjct: 63 YKIVIVSPEEIDNRSGTMNELEVEKFA------LALNSLQIKPAL--IYADAADVDANRF 114
Query: 76 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
+ + +R K + KAD+ YPVVS ASI+AKV RD + E + + +FGS
Sbjct: 115 ASLIERRLNYKAKIIAEHKADAKYPVVSAASILAKVVRDEEI------EKLKKQYGDFGS 168
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GYP DP+TK WL ++ FP +VR +W T
Sbjct: 169 GYPSDPKTKKWLEEYYKKHNSFPPIVRRTWETV 201
>sp|O74035|RNH2_PYRKO Ribonuclease HII OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 /
JCM 12380 / KOD1) GN=rnhB PE=1 SV=1
Length = 228
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 121
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
E + + GSGYP DP T+A+L ++ FP +VR W T
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>sp|O59351|RNH2_PYRHO Ribonuclease HII OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM
12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rnhB PE=1 SV=1
Length = 220
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 14/170 (8%)
Query: 3 SEAALPKWASNPFGWAVDIIDPREL---SAKMLNKNKINLNEISHDSAIGLITRVLNIGI 59
S+ P F +DI+D + + K +++ ++NE+ + + + ++ I
Sbjct: 41 SKQLTPGQREKLFSKLIDILDDYYVLLVTPKEIDERHHSMNELEAEK---FVVALNSLRI 97
Query: 60 LLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLR 117
++Y+D+ D +++ + + V+++ KAD+ Y +VS ASI+AKVTRDR +
Sbjct: 98 KPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREI- 156
Query: 118 GWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
E + + FGSGYP DP TK WL ++ FP +VR +W T
Sbjct: 157 -----EKLKQKYGEFGSGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETA 201
>sp|Q9V1A9|RNH2_PYRAB Ribonuclease HII OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnhB
PE=3 SV=1
Length = 224
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 16/153 (10%)
Query: 17 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKY 75
++V I+ P+++ + K ++NE+ ++ + + ++ + +Y+D+ AE++
Sbjct: 63 YSVVIVSPQDIDGR-----KGSMNELEVENFVKALN---SLKVKPEVIYIDSADVKAERF 114
Query: 76 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 134
+ R K V KAD+ Y +VS ASI+AKV RDR + E + + +FGS
Sbjct: 115 AENIRSRLAYEAKVVAEHKADAKYEIVSAASILAKVIRDREI------EKLKAEYGDFGS 168
Query: 135 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
GYP DP TK WL + FP +VR +W T
Sbjct: 169 GYPSDPRTKKWLEEWYSKHGNFPPIVRRTWDTA 201
>sp|Q9YET5|RNH2_AERPE Ribonuclease HII OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=rnhB PE=3 SV=2
Length = 225
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 15/135 (11%)
Query: 38 NLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEKYQAKLSQR-FPSIKFVVSKKAD 95
N+N + + +++R+++ +G+ + V +D GD + + L++ +V +KAD
Sbjct: 77 NINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDVQGLRLALTRLGIEPRSILVEEKAD 136
Query: 96 SLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFG 155
S YPVVS ASIVAKV RD L + M+ GSGYP DPET+ W+ + +F
Sbjct: 137 SRYPVVSAASIVAKVVRDARL------QVLRRMYGVRGSGYPSDPETREWVRE----VFA 186
Query: 156 ---FPSLVRFSWGTC 167
P ++R++W T
Sbjct: 187 RGEAPRVIRYTWSTV 201
>sp|Q8TPF4|RNH2_METAC Ribonuclease HII OS=Methanosarcina acetivorans (strain ATCC 35395 /
DSM 2834 / JCM 12185 / C2A) GN=rnhB PE=3 SV=1
Length = 223
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 15/114 (13%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPS--------IKFVVSKKADSLYPVVSGASIVAKVTRDR 114
VY D AE++ L +++ I+ + +AD++YPVVS ASI+AKV RD
Sbjct: 102 VYADAADVKAERFAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDE 161
Query: 115 TLRGWIFEETAENMHRNFGSGYPGDPETKAWLTD-HKHIIFGFPSLVRFSWGTC 167
+ EE + +FGSGYP DP+TKA+L K FP +VR SW T
Sbjct: 162 -----LIEEIKKEWSVDFGSGYPSDPKTKAFLLKWGKEHDGKFPEIVRQSWQTV 210
>sp|A6UUM1|RNH2_META3 Ribonuclease HII OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=rnhB PE=3 SV=1
Length = 277
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 27 LSAKMLNK--NKINLNEISHDSAIGLITRVL-------------NIGILLTEVYLDTVGD 71
L AK ++K N INLN+I + LI VL E+Y+D
Sbjct: 86 LEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQTATPQIEIYIDACSS 145
Query: 72 AEK-YQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 125
EK + ++ + +IK + KAD Y +VS ASI+AKV RDR + +
Sbjct: 146 NEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKVIRDRKIEEY------ 199
Query: 126 ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI 174
+ ++ GSGYP D T+ +L ++ P + R SW T K I
Sbjct: 200 KKIYGEIGSGYPSDKITQKYLANYVEKNRELPEIARKSWNTSKKLLKKI 248
>sp|A6UQ18|RNH2_METVS Ribonuclease HII OS=Methanococcus vannielii (strain SB / ATCC 35089
/ DSM 1224) GN=rnhB PE=3 SV=1
Length = 244
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 21/124 (16%)
Query: 62 TEVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 116
++++D +E+ ++AKL + ++ + KAD Y +VS ASI+AKVTRD +
Sbjct: 125 VKIFIDACSSSEQSFLNQFKAKLINK--KVEIIAEHKADEKYKIVSAASIIAKVTRDNII 182
Query: 117 RGWIFEETAENMHRNFGSGYPGDPETKAWL----TDHKHIIFGFPSLVRFSWGTCTSHFK 172
+ E + GSGYPGDP+TK +L +HK + P + R SW T K
Sbjct: 183 ESYKEE------FGDIGSGYPGDPKTKEFLKRFVKEHKKL----PKIARGSWATSKKLLK 232
Query: 173 DIVE 176
+ E
Sbjct: 233 EFEE 236
>sp|C6A1I4|RNH2_THESM Ribonuclease HII OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=rnhB PE=3 SV=1
Length = 224
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 20/168 (11%)
Query: 8 PKWASNPFGWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTE 63
PK F ++++D ELS + ++K + +N+ ++ +VLN + I
Sbjct: 46 PKKREELFEKIIELVDDYFILELSPEDIDKREGTMNDFEVEN----FAKVLNSLKIKPDL 101
Query: 64 VYLDTVG-DAEKYQAKLSQR---FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 119
VY+D + E++ + ++ +P K + KADS Y V+ ASI+AKVTRD+ +
Sbjct: 102 VYIDAADVNEERFGIVVREKLSFYP--KIIAEHKADSKYIPVAAASILAKVTRDKAI--- 156
Query: 120 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
E + ++ N GSGYP DP T+ +L ++ FP +VR SW T
Sbjct: 157 ---ERLKEIYGNIGSGYPSDPITRKFLEEYYKEHGSFPPVVRRSWKTL 201
>sp|Q97CG6|RNH2_THEVO Ribonuclease HII OS=Thermoplasma volcanium (strain ATCC 51530 / DSM
4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rnhB PE=3 SV=2
Length = 212
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
++ ++ P L+ M +++ LN+I + + L+++ I VY+D E+
Sbjct: 61 AYSYVVVSPETLNKDMASES---LNKIEENYILELLSKAEGI------VYIDCFDVIEER 111
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
K + + V KADS+YP VS ASIV+KV RDR + ++ AE + FGSG
Sbjct: 112 AEKYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DKIAEK-YGFFGSG 165
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
YP DP T +L S+ R W T
Sbjct: 166 YPSDPRTIDFLRKAMQQGLDLRSVARIHWET 196
>sp|Q2FP80|RNH2_METHJ Ribonuclease HII OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=rnhB PE=3 SV=1
Length = 212
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 34 KNKINLNEI---SHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQ-RFPSIKF 88
+ + +NEI SH A+ I + T Y+D E+Y+ +S P
Sbjct: 73 RRTMTMNEIVARSHAEAL--------IPLNCTCAYVDACDVSEERYEETVSSFSPPDCTI 124
Query: 89 VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTD 148
V KADSL+P VS ASI+AKV RDR I EE ++ + + GSGYP DP T +LT
Sbjct: 125 VARHKADSLFPPVSAASIIAKVERDR-----IIEELSKE-YGDIGSGYPSDPVTITYLTK 178
Query: 149 HKHIIFGFPSLVRFSWGT 166
+ P + R SW T
Sbjct: 179 YIRHHNQPPVIARSSWET 196
>sp|Q8PTA3|RNH2_METMA Ribonuclease HII OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM
3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rnhB PE=3
SV=1
Length = 220
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPS--------IKFVVSKKADSLYPVVSGASIVAKVTRDR 114
VY D AE++ L +++ IK V +AD++YPVVS ASI+AKV RD
Sbjct: 102 VYADAADVKAERFAENLLRQYAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDE 161
Query: 115 TLRGWIFEETAENMHRNFGSGYPGDPETKAWLTD-HKHIIFGFPSLVRFSWGT 166
+ EE +FGSGYP DP+T+ +L K FP +VR SW T
Sbjct: 162 -----LIEELKREWCIDFGSGYPSDPKTRGFLLKWGKEHGGDFPDIVRQSWQT 209
>sp|Q468N6|RNH2_METBF Ribonuclease HII OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=rnhB PE=3 SV=1
Length = 224
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 86 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 145
I+ + +AD+ YPVVS ASI+AKV RD + EE + +FGSGYP DP+TK +
Sbjct: 133 IEIISMHQADATYPVVSAASIIAKVRRDE-----LIEELKKEWGLDFGSGYPSDPKTKEF 187
Query: 146 LTD-HKHIIFGFPSLVRFSWGTC 167
L + K FP +VR SW T
Sbjct: 188 LLNWGKEHSGEFPEIVRQSWQTV 210
>sp|Q2NEI6|RNH2_METST Ribonuclease HII OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=rnhB PE=3 SV=1
Length = 212
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 35 NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE-KYQAKLSQRFPSIKFVVSKK 93
N INLNEI + + I +++ Y+D + E ++ K+ + P++ V K
Sbjct: 84 NDINLNEIETE-GMEEIIKIMK----PNACYIDCIDVRENRFHDKIQKINPNMTVVTEHK 138
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 153
AD Y +VS ASI+AKV RD+ L E + + GSGYP D T +L K+
Sbjct: 139 ADETYKIVSAASIIAKVERDKQL------EIIRQEYGSVGSGYPSDKNTINYLKTIKN-- 190
Query: 154 FGFPSLVRFSWGT 166
FP ++R +W T
Sbjct: 191 NQFPPIIRKTWKT 203
>sp|Q12YN9|RNH2_METBU Ribonuclease HII OS=Methanococcoides burtonii (strain DSM 6242)
GN=rnhB PE=3 SV=1
Length = 213
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 89 VVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT 147
V+SK AD L+PVVS ASI+AKV RD + E+ +M + GSGYP DP+TK +L
Sbjct: 134 VISKHGADDLFPVVSAASILAKVRRDE-----LIEKIKVDMGVDIGSGYPSDPKTKKFLE 188
Query: 148 DHKHIIFGFPSLVRFSWGTC 167
+ FP +VR SW T
Sbjct: 189 NWYRENSSFPDIVRHSWKTA 208
>sp|P57673|RNH2_THEAC Ribonuclease HII OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rnhB
PE=3 SV=1
Length = 212
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 21 IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLS 80
I+ P++L+ M ++ LN+I D + L+ ++ VY+D E+ ++
Sbjct: 67 ILHPKDLNRMMAAES---LNKIEEDEIVDLLRYADDL------VYIDCYDVIEERAQEII 117
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
Q + V KAD+++P VS ASIV+KV RD + + + +FGSGYP DP
Sbjct: 118 QMRSGRQVVCKHKADAIFPAVSAASIVSKVIRDAEI------DRLHDRFGDFGSGYPSDP 171
Query: 141 ETKAWLTDHKHIIFGFPSLVRFSWGT 166
T +L + +VR W T
Sbjct: 172 RTIDFLKKYLKENQDPSEIVRIHWST 197
>sp|A7I9P7|RNH2_METB6 Ribonuclease HII OS=Methanoregula boonei (strain 6A8) GN=rnhB PE=3
SV=1
Length = 213
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 94 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDH--KH 151
ADS YPVVS ASIVAKVTRDR + + GSGYP DPET A+L + +H
Sbjct: 130 ADSTYPVVSAASIVAKVTRDREIAKL------AKKYGQIGSGYPSDPETIAYLNAYIDEH 183
Query: 152 IIFGFPSLVRFSWGTCTS 169
I P + R SW T ++
Sbjct: 184 RI--PPPIARKSWKTVST 199
>sp|Q5UXT4|RNH2_HALMA Ribonuclease HII OS=Haloarcula marismortui (strain ATCC 43049 / DSM
3752 / JCM 8966 / VKM B-1809) GN=rnhB PE=3 SV=1
Length = 211
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 18 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 77
+ D + E+S + ++ ++ ++N ++ + ++ V G+ T DT DA ++
Sbjct: 54 SADAVGIAEISVERIDADETDMNTLTVEGQAEALSAVARDGLSGTVDAGDT--DAARFGR 111
Query: 78 KLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 136
+++ + + AD +V ASI+AKV RD + E AE + + GSGY
Sbjct: 112 RVADAVDTDVAVTAEHGADETDSLVGAASIIAKVARDT----HVAELAAE--YGDVGSGY 165
Query: 137 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
P DP T+ +L D+ P+ R SW TC
Sbjct: 166 PSDPTTRTFLADYVDRHGELPACARRSWSTC 196
>sp|A1RYM0|RNH2_THEPD Ribonuclease HII OS=Thermofilum pendens (strain Hrk 5) GN=rnhB PE=3
SV=1
Length = 213
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 23/157 (14%)
Query: 19 VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA-----E 73
V +++P+E+ + + NLN + LI VL+ G L VY+D+ E
Sbjct: 66 VRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEV-VYMDSPDPVPSRFEE 124
Query: 74 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ +A L + ++ V AD Y +V ASIVAK TRD + + + +FG
Sbjct: 125 RVRALLKGQ---VRIVAENGADEKYTIVGAASIVAKETRDEIINAL------KKTYGDFG 175
Query: 134 SGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGT 166
SGYP DP T + W+ H P + R W T
Sbjct: 176 SGYPSDPRTLRFAEEWVRKHGE----PPPIARKEWAT 208
>sp|O29634|RNH2_ARCFU Ribonuclease HII OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rnhB PE=1
SV=1
Length = 205
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 25/153 (16%)
Query: 22 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVGDAEKYQAKLS 80
+ P L +M K +NEI + +I R L E+ Y+D+ + ++
Sbjct: 64 VSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERLSREL 114
Query: 81 QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDP 140
+ ++ V KAD YP+V+ ASI+AKV R+R + E + +FGSGY DP
Sbjct: 115 EEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ERLKEKFGDFGSGYASDP 168
Query: 141 ET----KAWLTDHKHIIFGFPSLVRFSWGTCTS 169
T K W+ + PS VR W T ++
Sbjct: 169 RTREVLKEWIASGR-----IPSCVRMRWKTVSN 196
>sp|A2STJ6|RNH2_METLZ Ribonuclease HII OS=Methanocorpusculum labreanum (strain ATCC 43576
/ DSM 4855 / Z) GN=rnhB PE=3 SV=1
Length = 212
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 64 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 121
VYLD +A+++ + + S V S+ KAD+ Y VV ASIVAKVTRDR + +
Sbjct: 97 VYLDACDVNAKRFGENVLRLSGSSAHVCSEHKADAKYAVVGAASIVAKVTRDRCIAD-LK 155
Query: 122 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
EE E GSGYP DP T ++LT++ P R SW T
Sbjct: 156 EEYGE-----IGSGYPSDPATISFLTEYIRTRGEVPLCARRSWQT 195
>sp|Q97W56|RNH2_SULSO Ribonuclease HII OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=rnhB PE=3 SV=1
Length = 212
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSL 97
NLN++++D+ +I + + + V D VGD EK +L + K V KAD L
Sbjct: 76 NLNDLTYDAVSKIILSLSSFNPEIVTV--DKVGD-EKPVIELINKL-GYKSNVVHKADVL 131
Query: 98 YPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP 157
+ S ASI+AKV RD + + + ++ +FGSGYP DP T WL P
Sbjct: 132 FVEASAASIIAKVIRDNYI------DELKQVYGDFGSGYPADPRTIKWLKSFYEKNPNPP 185
Query: 158 SLVRFSWGTCTS 169
++R SW S
Sbjct: 186 PIIRRSWKILRS 197
>sp|Q4JA60|RNH2_SULAC Ribonuclease HII OS=Sulfolobus acidocaldarius (strain ATCC 33909 /
DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rnhB
PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 26/156 (16%)
Query: 15 FGWAVDIID--PRELSAKMLNKNKINLNEISHDSAIGLI--TRVLNIGILLTEVYLDTVG 70
+ +A+ ++ P E+ ++ NLNEI++ + I +I V N I V +D VG
Sbjct: 59 YSYAISLVKAYPEEIDSE-------NLNEITYRAMIQIIHSMSVYNPSI----VTVDKVG 107
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
+A + ++ S + V AD Y VS ASI+AKV RD + + +
Sbjct: 108 NASAVEREIININSSPR--VENNADVKYVEVSAASIIAKVVRDNII------NELKKTYG 159
Query: 131 NFGSGYPGDPETKAWLTD--HKHIIFGFPSLVRFSW 164
+FGSGYPGD +T W+ D + + P ++R SW
Sbjct: 160 DFGSGYPGDKKTVEWIKDLYSRQPTYALP-IIRRSW 194
>sp|B6YVT5|RNH2_THEON Ribonuclease HII OS=Thermococcus onnurineus (strain NA1) GN=rnhB
PE=3 SV=1
Length = 227
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 88 FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT 147
+ KAD + VS ASI+AKV RDR + E ++ + GSGYP DP T+ +L
Sbjct: 128 IIAEHKADDKFVPVSAASILAKVARDRAI------EKLKDQYGEIGSGYPSDPRTRTFLE 181
Query: 148 DHKHIIFGFPSLVRFSWGTC 167
++ FP +VR +W T
Sbjct: 182 EYYRKHGEFPPIVRRTWKTL 201
>sp|Q974Z3|RNH2_SULTO Ribonuclease HII OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=rnhB PE=3 SV=1
Length = 208
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 17/149 (11%)
Query: 16 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 75
G+ + + P E+ ++ NLNE+++ + I +I ++ + + +D VG+ +
Sbjct: 62 GFTIVKVSPEEIDSE-------NLNELTYKAMIKIIYSLVEFKPI--RISIDKVGNTKVV 112
Query: 76 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 135
+ ++ + V + AD + S ASI+AKV RD + +T ++ + +FGSG
Sbjct: 113 EQEIIKLGMEPNIVTN--ADVYFVEASAASIIAKVIRDNII------DTLKSKYGDFGSG 164
Query: 136 YPGDPETKAWLTDHKHIIFGFPSLVRFSW 164
YP DP+T W+ + P ++R SW
Sbjct: 165 YPSDPKTVNWVKNVYKEYLTPPPIIRRSW 193
>sp|A0B796|RNH2_METTP Ribonuclease HII OS=Methanosaeta thermophila (strain DSM 6194 / PT)
GN=rnhB PE=3 SV=1
Length = 211
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 86 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET--- 142
I + AD + VV+ ASI+AKV RDR++R E A + R GSGYP DP T
Sbjct: 127 IDILAEHNADRKHIVVAAASIIAKVARDRSIRDL---EAA--LGRPLGSGYPSDPATVRF 181
Query: 143 -KAWLTDHKHIIFGFPSLVRFSWGTC 167
K W+ ++ + PS VR SW T
Sbjct: 182 LKEWIEENGDL----PSFVRKSWSTA 203
>sp|A5ULV6|RNH2_METS3 Ribonuclease HII OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=rnhB PE=3 SV=1
Length = 207
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 64/133 (48%), Gaps = 14/133 (10%)
Query: 37 INLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKAD 95
INLNEI IG+ + N+ + +D V AE++Q KL+ + V KAD
Sbjct: 80 INLNEIER---IGMEKILSNLN--PEKAIVDAVDIKAERFQNKLAND-TGVNVVAEHKAD 133
Query: 96 SLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN-FGSGYPGDPETKAWLTDHKHIIF 154
Y VS ASI+AK RD I E + + GSGYP DP TK +LT+ +
Sbjct: 134 DNYIEVSAASIIAKQERD----AHIAEINKDYIKMGGIGSGYPSDPITKKFLTNFTY--D 187
Query: 155 GFPSLVRFSWGTC 167
P VR SW T
Sbjct: 188 EMPDFVRKSWATV 200
>sp|Q3IRF6|RNH2_NATPD Ribonuclease HII OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=rnhB PE=3 SV=1
Length = 212
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 17/154 (11%)
Query: 19 VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAK 78
D ID + + + + N+N+++ + + V G E L GD + +
Sbjct: 56 ADRIDVAVVECQPADIDDANMNDLTVAAHAAALDGVAASG----ETVLCDAGDVDA--GR 109
Query: 79 LSQRFPS-----IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 133
+ R + + AD +V ASI+AK R+R + E + G
Sbjct: 110 FADRVAAAATLDVSVAAEHGADGSDDLVGAASIIAKSARERHV------EQLSEQYGAVG 163
Query: 134 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 167
SGYP DP TKA+L + GFP VR SW TC
Sbjct: 164 SGYPSDPTTKAFLREAFEQEGGFPPCVRTSWSTC 197
>sp|Q74MH3|RNH2_NANEQ Ribonuclease HII OS=Nanoarchaeum equitans (strain Kin4-M) GN=rnhB
PE=3 SV=1
Length = 200
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 35 NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKA 94
++ NLNE+ LI + + ++ + +D+ E Y+ ++ + +++K
Sbjct: 70 DRYNLNELEAKVTANLINSIED---EISHIVIDSPERPENYKLRILKYLKKRVKIITKNK 126
Query: 95 DSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIF 154
P+V+ ASIVAKV RDR + E+ E +FGSGYP D T+ L + I+
Sbjct: 127 GEEDPLVAAASIVAKVIRDREI-----EKIKEQTGIDFGSGYPSDKRTRKALEQYYRILK 181
Query: 155 GFPSLVRFSW 164
+ +R W
Sbjct: 182 PY---IRKKW 188
>sp|O27102|RNH2_METTH Ribonuclease HII OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=rnhB PE=3 SV=1
Length = 206
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 38 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSL 97
NLNEI + +I +++ V + E+ + ++ F I+ AD+
Sbjct: 81 NLNEIEKIAIKRIIPEAQPDRVIIDSVDVK----PERLEEEIRSHFGEIEVTAEHGADTR 136
Query: 98 YPVVSGASIVAKVTRDRTLRGWIFEETAENMHR---NFGSGYPGDPETKAWLTDHKHIIF 154
Y V+ ASI+AKV RD + E+ + +R + GSGYP DP T+ +L +
Sbjct: 137 YYPVAAASIIAKVERDLEI------ESIQKKNRKLGDIGSGYPSDPRTREFLESFTY--D 188
Query: 155 GFPSLVRFSWGTC 167
P VR SW T
Sbjct: 189 ELPDFVRRSWATV 201
>sp|A8MAH5|RNH2_CALMQ Ribonuclease HII OS=Caldivirga maquilingensis (strain ATCC 700844 /
DSMZ 13496 / JCM 10307 / IC-167) GN=rnhB PE=3 SV=1
Length = 209
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 61 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 120
+T VY+D+ D + + ++ +V AD P+VS ASIVAKV RD +
Sbjct: 102 VTRVYVDS-PDPNPSRFRGFINVKDVELIVLNHADESIPLVSAASIVAKVIRDTIISR-- 158
Query: 121 FEETAENMHRNFGSGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGT 166
+ET + +FGSGYP DP T + W+ + P +VR SW T
Sbjct: 159 LKET----YGDFGSGYPSDPRTISALRRWINNGT-----LPPIVRRSWRT 199
>sp|B1YB67|RNH2_PYRNV Ribonuclease HII OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM
9278 / V24Sta) GN=rnhB PE=3 SV=1
Length = 198
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 71 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 130
D +Y + L F + + VV+ P V+ ASIVAKV RDR L + +E
Sbjct: 109 DPRRYGSALE--FITGRRVVAMHKGESVPQVAAASIVAKVVRDR-LVALLKKEVG----- 160
Query: 131 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 166
+FGSGYP DP T+ WL + P VR+SW T
Sbjct: 161 DFGSGYPSDPRTREWLKWGRLP----PECVRWSWRT 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,272,747
Number of Sequences: 539616
Number of extensions: 3527526
Number of successful extensions: 9391
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 9195
Number of HSP's gapped (non-prelim): 228
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)