Query 026553
Match_columns 237
No_of_seqs 13 out of 15
Neff 1.7
Searched_HMMs 13730
Date Mon Mar 25 16:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026553.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026553hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s0pa_ a.192.1.1 (A:) N-termi 30.5 12 0.00089 28.8 2.3 21 100-120 133-153 (176)
2 d1x3aa1 a.240.1.1 (A:8-94) Syn 28.8 23 0.0017 24.3 3.3 28 93-120 55-82 (87)
3 d1iufa1 a.4.1.7 (A:-2-75) Ars- 17.6 52 0.0038 22.9 3.3 26 63-93 1-26 (78)
4 d2c60a1 d.15.2.2 (A:43-122) Mi 13.8 6.3 0.00046 28.1 -2.5 15 186-200 2-16 (80)
5 d2cvba1 c.47.1.10 (A:2-188) Pr 12.2 41 0.003 24.1 1.6 43 55-123 20-62 (187)
6 d2nptb1 d.15.2.2 (B:42-123) Mi 12.0 7.8 0.00057 27.7 -2.5 15 186-200 2-16 (82)
7 d3cx5e2 f.23.12.1 (E:31-86) Ir 10.8 46 0.0033 21.8 1.3 11 149-159 6-16 (56)
8 d1k12a_ b.18.1.15 (A:) Fucose 10.5 52 0.0038 21.9 1.6 17 47-63 55-72 (158)
9 d1vhxa_ c.55.3.8 (A:) Hypothet 10.2 70 0.0051 22.5 2.3 37 101-138 70-106 (140)
10 d1ppje2 f.23.12.1 (E:1-69) Iro 8.4 50 0.0036 22.1 0.8 10 150-159 8-17 (69)
No 1
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=30.49 E-value=12 Score=28.81 Aligned_cols=21 Identities=10% Similarity=0.412 Sum_probs=19.1
Q ss_pred cCCcchHHHHHHHHHHHHHHH
Q 026553 100 KDSEHEVFCKRYMELYQELRE 120 (237)
Q Consensus 100 k~sehe~~cK~YMelY~elRE 120 (237)
+|..|-.|+|+|+.++.+|++
T Consensus 133 kD~~hveWvka~~~~l~~L~~ 153 (176)
T d1s0pa_ 133 VNQDQVDWVSNYVNFLKDLEK 153 (176)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999976
No 2
>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.82 E-value=23 Score=24.29 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=22.6
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHHH
Q 026553 93 RRTRLVLKDSEHEVFCKRYMELYQELRE 120 (237)
Q Consensus 93 rrtRlvlk~sehe~~cK~YMelY~elRE 120 (237)
-+.+||++.-+++.+|++|-=.-..++.
T Consensus 55 ~~~~LVP~~v~e~~FW~rYF~~v~~lkq 82 (87)
T d1x3aa1 55 MRFALVPKLVKEEVFWRNYFYRVSLIKQ 82 (87)
T ss_dssp HHHHTTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCcCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999765555543
No 3
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=17.62 E-value=52 Score=22.91 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=20.5
Q ss_pred ccCCCCCcccccCCCCCCChhHHHHHHHHHH
Q 026553 63 GDHVPPRERFVIPRDNIPNKRRKQLREQFMR 93 (237)
Q Consensus 63 gd~vp~Rerf~iprdn~Pn~rrKqlReqfmr 93 (237)
|+|+++.+ |-+||+-.++-||.++..
T Consensus 1 ~~~~~~~~-----R~aIs~~qK~ALR~~~~~ 26 (78)
T d1iufa1 1 GIHMGKIK-----RRAITEHEKRALRHYFFQ 26 (78)
T ss_dssp CCCCCCCS-----SSCCCSHHHHHHHHHHHS
T ss_pred CCCCCccc-----cccCCHHHHHHHHHHHHh
Confidence 67888544 778899999999999743
No 4
>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.77 E-value=6.3 Score=28.06 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=12.7
Q ss_pred hhhhhhhhhHHhhhh
Q 026553 186 QIKDKFEYDRERRMK 200 (237)
Q Consensus 186 qirdkfeydrerrmr 200 (237)
-||=||||..|||+=
T Consensus 2 dvRVKfE~~gEkRIi 16 (80)
T d2c60a1 2 DVRIKFEHNGERRII 16 (80)
T ss_dssp CEEEEEEETTEEEEE
T ss_pred CcEEEEEecCceEEE
Confidence 478899999999863
No 5
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}
Probab=12.23 E-value=41 Score=24.07 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=32.0
Q ss_pred ecCceeecccCCCCCcccccCCCCCCChhHHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHHhHh
Q 026553 55 VDGEMHEIGDHVPPRERFVIPRDNIPNKRRKQLREQFMRRTRLVLKDSEHEVFCKRYMELYQELRENWE 123 (237)
Q Consensus 55 VDGEmheigd~vp~Rerf~iprdn~Pn~rrKqlReqfmrrtRlvlk~sehe~~cK~YMelY~elREnWE 123 (237)
+||+.|++.+. +++.++.. | =..+=++|++||...++|.+.+.
T Consensus 20 ~~G~~~~Lsd~---kGk~vvl~--------------F---------watwCp~C~~~~p~l~~l~~~y~ 62 (187)
T d2cvba1 20 PRGGRYRLSQF---HEPLLAVV--------------F---------MCNHCPYVKGSIGELVALAERYR 62 (187)
T ss_dssp TTSCEEEGGGC---CSSEEEEE--------------E---------ECSSCHHHHTTHHHHHHHHHHTT
T ss_pred CCCCEEEHHHh---CCCeEEEE--------------E---------eCCCCccchhhhhhhhhhhhhcc
Confidence 68999999863 56544432 2 25578999999999999998884
No 6
>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.95 E-value=7.8 Score=27.68 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=12.6
Q ss_pred hhhhhhhhhHHhhhh
Q 026553 186 QIKDKFEYDRERRMK 200 (237)
Q Consensus 186 qirdkfeydrerrmr 200 (237)
-+|=||||..|||+=
T Consensus 2 dvRVKfE~~gEkRIi 16 (82)
T d2nptb1 2 DVRVKFEHRGEKRIL 16 (82)
T ss_dssp CEEEEEEETTEEEEE
T ss_pred CcEEEEEecCceEEE
Confidence 478899999999863
No 7
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.82 E-value=46 Score=21.80 Aligned_cols=11 Identities=9% Similarity=0.208 Sum_probs=8.2
Q ss_pred CCCCCccCCCC
Q 026553 149 DQDFNPYRSGR 159 (237)
Q Consensus 149 d~df~pyr~rr 159 (237)
--||++||+..
T Consensus 6 vPDFs~Yr~~~ 16 (56)
T d3cx5e2 6 TPNFDDVLKEN 16 (56)
T ss_dssp CCCCTTTBCCT
T ss_pred CCCcHHhcCCC
Confidence 35999998743
No 8
>d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel (Anguilla anguilla) [TaxId: 7936]}
Probab=10.51 E-value=52 Score=21.88 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=12.5
Q ss_pred CCCCCeeEec-Cceeecc
Q 026553 47 KEKSEWWIVD-GEMHEIG 63 (237)
Q Consensus 47 ~e~SEWW~VD-GEmheig 63 (237)
.+...||.|| |+...|.
T Consensus 55 ~~~~~W~~VDLg~~~~i~ 72 (158)
T d1k12a_ 55 GQANPWWRVDLLQVYTIT 72 (158)
T ss_dssp SCSSCEEEEEEEEEEEEE
T ss_pred CCCCcEEEEEcCCceEee
Confidence 4567899999 6666665
No 9
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}
Probab=10.19 E-value=70 Score=22.50 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=25.7
Q ss_pred CCcchHHHHHHHHHHHHHHHhHhHhhccCccchhhhhh
Q 026553 101 DSEHEVFCKRYMELYQELRENWERLYWDEGYSKKLAKD 138 (237)
Q Consensus 101 ~sehe~~cK~YMelY~elREnWErLyWDEgyskkia~d 138 (237)
++++-..++.+-+..++ +-+.+=.+|||.||-+.|+.
T Consensus 70 ~~~~~~~~~~f~~~l~~-~~~i~V~~~DEr~TS~~A~~ 106 (140)
T d1vhxa_ 70 VGPRGEASQTFAKVLET-TYNVPVVLWDERLTTMAAEK 106 (140)
T ss_dssp CCHHHHHHHHHHHHHHH-HHCSCEEEECCSSCHHHHHH
T ss_pred chhHHHHHHHHHHHhcc-CCCccEEEeecccCHHHHHH
Confidence 44555566666665543 23678889999999998865
No 10
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.40 E-value=50 Score=22.15 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=7.9
Q ss_pred CCCCccCCCC
Q 026553 150 QDFNPYRSGR 159 (237)
Q Consensus 150 ~df~pyr~rr 159 (237)
-||+.||+.-
T Consensus 8 PDFs~YRr~~ 17 (69)
T d1ppje2 8 PDFSDYRRPE 17 (69)
T ss_dssp CCCTTTBCGG
T ss_pred CCchhhcccc
Confidence 5999998654
Done!