BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026555
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 12 DEEFILNSRRVKLFTCSWIPQNQEPKALIFICHGYAMECSIGMNSTAIRLANEGYACYGI 71
D ++N+ LF W P PKALIF+ HG A E S A L +
Sbjct: 18 DLPHLVNADGQYLFCRYWAPTGT-PKALIFVSHG-AGEHSGRYEELARMLMGLDLLVFAH 75
Query: 72 DYQGHGKSAGLSGYIDNFDDLVDDCFNHFTSICEKEENKEKMRYLLGESMGGAMVLLLHR 131
D+ GHG+S G + +F V D H S+ +++ +LLG SMGGA+ +L
Sbjct: 76 DHVGHGQSEGERMVVSDFHVFVRDVLQHVDSM--QKDYPGLPVFLLGHSMGGAIAILTAA 133
Query: 132 KKPDYFDGAVLVAPMC 147
++P +F G VL++P+
Sbjct: 134 ERPGHFAGMVLISPLV 149
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 12 DEEFILNSRRVKLFTCSWIPQNQEPKALIFICHGYAMECSIGMNSTAIRLANEGYACYGI 71
D ++N+ LF W P PKALIF+ HG A E S A L +
Sbjct: 35 DLPHLVNADGQYLFCRYWKPTGT-PKALIFVSHG-AGEHSGRYEELARMLMGLDLLVFAH 92
Query: 72 DYQGHGKSAGLSGYIDNFDDLVDDCFNHFTSICEKEENKEKMRYLLGESMGGAMVLLLHR 131
D+ GHG+S G + +F V D H S+ +++ +LLG SMGGA+ +L
Sbjct: 93 DHVGHGQSEGERMVVSDFHVFVRDVLQHVDSM--QKDYPGLPVFLLGHSMGGAIAILTAA 150
Query: 132 KKPDYFDGAVLVAPMC 147
++P +F G VL++P+
Sbjct: 151 ERPGHFAGMVLISPLV 166
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 12 DEEFILNSRRVKLFTCSWIPQNQEPKALIFICHGYAMECSIGMNSTAIRLANEGYACYGI 71
D ++N+ LF W P PKALIF+ HG A E S A L +
Sbjct: 36 DLPHLVNADGQYLFCRYWKPTGT-PKALIFVSHG-AGEHSGRYEELARMLMGLDLLVFAH 93
Query: 72 DYQGHGKSAGLSGYIDNFDDLVDDCFNHFTSICEKEENKEKMRYLLGESMGGAMVLLLHR 131
D+ GHG+S G + +F V D H S+ +++ +LLG SMGGA+ +L
Sbjct: 94 DHVGHGQSEGERMVVSDFHVFVRDVLQHVDSM--QKDYPGLPVFLLGHSMGGAIAILTAA 151
Query: 132 KKPDYFDGAVLVAPMC 147
++P +F G VL++P+
Sbjct: 152 ERPGHFAGMVLISPLV 167
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 12 DEEFILNSRRVKLFTCSWIPQNQEPKALIFICHGYAMECSIGMNSTAIRLANEGYACYGI 71
D ++N+ LF W P PKALIF+ HG A E S A L +
Sbjct: 35 DLPHLVNADGQYLFCRYWKPTGT-PKALIFVSHG-AGEHSGRYEELARXLXGLDLLVFAH 92
Query: 72 DYQGHGKSAGLSGYIDNFDDLVDDCFNHFTSICEKEENKEKMRYLLGESMGGAMVLLLHR 131
D+ GHG+S G + +F V D H S +++ +LLG S GGA+ +L
Sbjct: 93 DHVGHGQSEGERXVVSDFHVFVRDVLQHVDS--XQKDYPGLPVFLLGHSXGGAIAILTAA 150
Query: 132 KKPDYFDGAVLVAPMC 147
++P +F G VL++P+
Sbjct: 151 ERPGHFAGXVLISPLV 166
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 27 CSWIPQNQEPKALIFICHGYAMECSIGMNSTAIRLANEGYACYGIDYQGHGKSAGLSGYI 86
CSW P+ + +C +E + A+ LA +GY D GHG+S+ L +
Sbjct: 19 CSW----GSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLE-MV 73
Query: 87 DNFDDLVDDCFNHFTSICEK--EENKEKMRYLLGESMGGAMVLLLHRKKPDYFDGAVLV 143
++ L F + ++ +E ++ L+G SMG + + +P +LV
Sbjct: 74 TSYSSLT------FLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILV 126
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 30 IPQNQEPKALIFICHGYAMECSIGMNSTAIRLANEGYACYGIDYQGHGKSAG-----LSG 84
+ + P L+F+ HG C++ + + E Y C +D +GHG+S G + G
Sbjct: 10 VGNKKSPNTLLFV-HGSG--CNLKIFGELEKYL-EDYNCILLDLKGHGESKGQCPSTVYG 65
Query: 85 YIDNFDDLVDDCFNHFTSICEKEENKEKMRYLLGESMGGAMVLLLHRKK 133
YIDN + + + + + + ++N L+G S GGA+VL + KK
Sbjct: 66 YIDNVANFITN-----SEVTKHQKN----ITLIGYSXGGAIVLGVALKK 105
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 23/142 (16%)
Query: 13 EEFI-LNSRRVKLFTCSWIPQNQEPKALIFICHGYAM------ECSIGMNSTAIRLANEG 65
EEFI +N RV F + + +F HGY+ + + N + I G
Sbjct: 6 EEFIDVNGTRV--FQRKXVTDSNRRSIALF--HGYSFTSXDWDKADLFNNYSKI-----G 56
Query: 66 YACYGIDYQGHGKSAGLSGYIDNFDDLVDDCFNHFTSICEK--EENKEKMRYLLGESMGG 123
Y Y DY G G+SA Y + DL H + N + G S GG
Sbjct: 57 YNVYAPDYPGFGRSASSEKYGIDRGDL-----KHAAEFIRDYLKANGVARSVIXGASXGG 111
Query: 124 AMVLLLHRKKPDYFDGAVLVAP 145
V+ + PD DG + VAP
Sbjct: 112 GXVIXTTLQYPDIVDGIIAVAP 133
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 34 QEPKALIF----ICHGYAMECSIGM-NSTAIRLANEGYACYGIDYQGHGKSAGLSGYIDN 88
+EP I+ I HG+ + + A L +E A D+ GHG S G +
Sbjct: 39 EEPFGEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTV 98
Query: 89 FDDLVDDCFNHFTSICEKEENKEKMR--YLLGESMGGAMVLLLHRKKPDYFDGAVLVAPM 146
+++ D +I + +R YL+G S GG + +L PD VL+AP
Sbjct: 99 LNEIEDA-----NAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPA 153
Query: 147 CKI 149
+
Sbjct: 154 ATL 156
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 34 QEPKALIF----ICHGYAMECSIGM-NSTAIRLANEGYACYGIDYQGHGKSAGLSGYIDN 88
+EP I+ I HG+ + + A L +E A D+ GHG S G +
Sbjct: 39 EEPFGEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTV 98
Query: 89 FDDLVDDCFNHFTSICEKEENKEKMR--YLLGESMGGAMVLLLHRKKPDYFDGAVLVAPM 146
+++ D +I + +R YL+G + GG + +L PD VL+AP
Sbjct: 99 LNEIEDA-----NAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPA 153
Query: 147 CKI 149
+
Sbjct: 154 ATL 156
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 34 QEPKALIF----ICHGYAMECSIGM-NSTAIRLANEGYACYGIDYQGHGKSAGLSGYIDN 88
+EP I+ I HG+ + + A L +E A D+ GHG S G +
Sbjct: 39 EEPFGEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTV 98
Query: 89 FDDLVDDCFNHFTSICEKEENKEKMR--YLLGESMGGAMVLLLHRKKPDYFDGAVLVAPM 146
+++ D +I + +R YL+G + GG + +L PD VL+AP
Sbjct: 99 LNEIEDA-----NAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPA 153
Query: 147 CKI 149
+
Sbjct: 154 ATL 156
>pdb|3LLC|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_002548124.1)
From Agrobacterium Vitis S4 At 1.80 A Resolution
Length = 270
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 17/92 (18%)
Query: 62 ANEGYACYGIDYQGHGKSAGL--SGYIDNFDDLVDDCFNHFTSICEKEENKEKMRYLLGE 119
A+ G DY GHG S G G I + + +HF K + L+G
Sbjct: 63 ASLGVGAIRFDYSGHGASGGAFRDGTISRWLEEALAVLDHF---------KPEKAILVGS 113
Query: 120 SMGGAMVLLL------HRKKPDYFDGAVLVAP 145
S GG + L L P G VL+AP
Sbjct: 114 SXGGWIALRLIQELKARHDNPTQVSGXVLIAP 145
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 22 VKLFTCSWIPQNQEPKALIFICHGYAMECSIGMNSTAIRLANEGYACYGIDYQGHGKSAG 81
V++F W P++ + +I HG+ + S ++ + N+G+ D +GHG+S+
Sbjct: 14 VEIFYKDWGPRDAK---VIHFHHGWPL-SSDDWDAQLLFFVNKGFRVVAHDRRGHGRSSQ 69
Query: 82 L-SGYIDNFDDLVDDCFNHFTSICEKEENKEKMRYLLGESMGGAMVL 127
+ G+ + D DD ++ EK M +G S GG V+
Sbjct: 70 VWDGH--DMDHYADDA----AAVVEKLGTHGAMH--VGHSTGGGEVV 108
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 37 KALIFICHGYAMECSIGMNSTAIRLANEGYACYGIDYQGHGKSAGLSGYIDNFDDLVDDC 96
KA I G+ + S+ N+ A E + DY G G S L Y N +D
Sbjct: 20 KASIMFAPGFGCDQSV-WNAVAPAF-EEDHRVILFDYVGSGHS-DLRAYDLNRYQTLDGY 76
Query: 97 FNHFTSICEKEENKEKMRYLLGESMGGAMVLLLHRKKPDYFDGAVLVAP 145
+CE + KE + +G S+G + +L ++P+ F V+V P
Sbjct: 77 AQDVLDVCEALDLKETV--FVGHSVGALIGMLASIRRPELFSHLVMVGP 123
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
Query: 22 VKLFTCSWIPQNQEPK-ALIFICHGYAMECSIGMNSTAIRLANE-GYACYGIDYQGHGKS 79
+KL +P+N K L I HG+ NE G A D GHGKS
Sbjct: 11 IKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKS 70
Query: 80 AGLSGYIDNFDDLVDDCFNHFTSICEKEENKEKMR-----YLLGESMGGAMVLLLHRKKP 134
G F+D F T+I + +K+ Y+ G S GG V+L +
Sbjct: 71 DG------KFEDHT--LFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMER 122
Query: 135 DYFDGAVLVAPMCKIAE 151
D + ++P I E
Sbjct: 123 DIIKALIPLSPAAMIPE 139
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 31/162 (19%)
Query: 65 GYACYGIDYQGHGKSAGLSGYIDNFDDLVDDCFNHFTSICEKEENKEKMRYLLGESMGGA 124
G + Y Y GH + ++ + + NHF EK +++G SMGGA
Sbjct: 70 GQSEYPETYPGH-----IMSWVGMRVEQILGLMNHFG--IEKS-------HIVGNSMGGA 115
Query: 125 MVLLLHRKKPDYFDGAVLV----APMCKIAENVKPHPLVISVLTKLCKFIPTWKIIPSQD 180
+ L L + P+ FD L+ APM N +P L +L F ++ P ++
Sbjct: 116 VTLQLVVEAPERFDKVALMGSVGAPM-----NARP-----PELARLLAFYADPRLTPYRE 165
Query: 181 IVDVAFKLPEK---RKEIRANPYCYKGRPRLKTGYELMRVSM 219
++ PE +EI + + P ++ E+M SM
Sbjct: 166 LIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESM 207
>pdb|2RAU|A Chain A, Crystal Structure Of A Putative Lipase (Np_343859.1) From
Sulfolobus Solfataricus At 1.85 A Resolution
Length = 354
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 22/85 (25%)
Query: 56 STAIRLANEGYACYGIDYQGH-------------GKSAGLSGYIDNFDDLVDDCFNHFTS 102
S + LA G+ Y IDY+ H + G S +I + ++V S
Sbjct: 84 SIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWISDIKEVV--------S 135
Query: 103 ICEKEENKEKMRYLLGESMGGAMVL 127
+++ +E++ YL GES GG L
Sbjct: 136 FIKRDSGQERI-YLAGESFGGIAAL 159
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 16 ILNSRRVKLFTCSWIPQNQEPKALIFICHGYAMECSIGMNSTAIRLANEGYACYGIDYQG 75
ILN R ++ + P +Q+ L+ + HG+ E LA GY ID +G
Sbjct: 13 ILNCRGTRIHAVADSPPDQQ-GPLVVLLHGFP-ESWYSWRHQIPALAGAGYRVVAIDQRG 70
Query: 76 HGKSA 80
+G+S+
Sbjct: 71 YGRSS 75
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938)
From Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 16 ILNSRRVKLFTCSWIPQNQEPKALIFICHGYAMECSIGMNSTAIRLANEGYACYGIDYQG 75
ILN R ++ + P +Q+ L+ + HG+ E LA GY ID +G
Sbjct: 7 ILNCRGTRIHAVADSPPDQQ-GPLVVLLHGFP-ESWYSWRHQIPALAGAGYRVVAIDQRG 64
Query: 76 HGKSA 80
+G+S+
Sbjct: 65 YGRSS 69
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 22/198 (11%)
Query: 39 LIFICHGYAMECSIGMNSTAIRLANEG--YACYGIDYQG-HGKSAGLSGYIDNFDDLVDD 95
L++ G+ + S+ + + G YA + G +GK+ +G +D ++ DD
Sbjct: 449 LLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDD 508
Query: 96 CFNHFTSICEKEENKEKMRYLLGESMGGAMVLLLHRKKPDYFDGAVLVAPMCKIAENVKP 155
+ +++ + K + G S GG +V ++P+ + GAV+ C +
Sbjct: 509 FHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELY-GAVV----CAV------ 557
Query: 156 HPLVISVLTKLCKFIPTWKIIPSQDIVDVAFKLPEKRKEIRANPYCYKGRPRLKTGYELM 215
PL+ V L TW IP + PE K + A + RP ++ LM
Sbjct: 558 -PLLDMVRYHLFGSGRTW--IPEYGTAE----KPEDFKTLHAYSPYHHVRPDVRYPALLM 610
Query: 216 RVSMDLENRLDEVCSKIF 233
++ D ++R+D + ++ F
Sbjct: 611 -MAADHDDRVDPMHARKF 627
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 115 YLLGESMGGAMVLLLHRKKPDYFDGAVLVAPMCKIAENVKPHPLVISVLTKLCKFIPT 172
+L+G S GGA+ L K D+ G ++ + + PL + + +L +P
Sbjct: 100 FLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV-------PLTVKEMNRLIDELPA 150
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 40 IFICHGYAMECSIGMNSTAIR-----LANEGYACYGIDYQGHGKSAGLSGYIDNFDDLVD 94
+ + HG+ NS +R L ++GY C+ Y+GHG + DD
Sbjct: 19 VLLLHGFTG------NSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGP-DDWWQ 71
Query: 95 DCFNHFTSICEKEENKEKMRYLLGESMGGAMVLLLHRKKPDYFDGAVLV-APM 146
D N + + K + EK+ + G S+GG L L P +G V + APM
Sbjct: 72 DVMNGYEFL--KNKGYEKIA-VAGLSLGGVFSLKLGYTVP--IEGIVTMCAPM 119
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|B Chain B, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|C Chain C, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|D Chain D, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4EM5|A Chain A, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|B Chain B, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|C Chain C, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|D Chain D, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
Length = 541
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 67 ACYGIDYQGHGKSAGLSGYIDNFDDLVDDCFNHFTSICEKEENKEKMRYLLGESMGGAMV 126
AC I ++ +AG GY D+ + D NH T I EK R L E + V
Sbjct: 263 ACVQITFKEKIGTAGRGGYFDSIGIIRDVIQNHLTQILSL-LTMEKPRSLSAEDIRDEKV 321
Query: 127 LLLHRKKP 134
+L + P
Sbjct: 322 QVLRQVVP 329
>pdb|3H2H|A Chain A, Crystal Structure Of G231f Mutant Of The Rice Cell Wall
Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 53 GMNSTAIRLANEGYACYGIDYQGHGKS 79
G + RLA++GY G DY G GKS
Sbjct: 105 GDDPLVTRLASQGYVVVGSDYLGLGKS 131
>pdb|3H2I|A Chain A, Crystal Structure Of N228w Mutant Of The Rice Cell Wall
Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 53 GMNSTAIRLANEGYACYGIDYQGHGKS 79
G + RLA++GY G DY G GKS
Sbjct: 105 GDDPLVTRLASQGYVVVGSDYLGLGKS 131
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 40 IFICHGYAMECSIGMNSTAIRLANEGYACYGIDYQGHGKSAG-LSGYIDNFDDLVDDCFN 98
I HG+ + S I LA +GY D +GHG+S+ SG ++ D DD
Sbjct: 22 IVFSHGWPLNAD-SWESQMIFLAAQGYRVIAHDRRGHGRSSQPWSG--NDMDTYADD--- 75
Query: 99 HFTSICEKEENKEKMRYLLGESMGGAMV 126
+ E + ++ + L G S GG V
Sbjct: 76 -LAQLIEHLDLRDAV--LFGFSTGGGEV 100
>pdb|3H2G|A Chain A, Crystal Structure Of A Rice Cell Wall Degrading Esterase
Lipa From Xanthomonas Oryzae
pdb|3H2J|A Chain A, Crystal Structure Of The Rice Cell Wall Degrading Esterase
Lipa From Xanthomonas Oryzae
pdb|3H2K|A Chain A, Crystal Structure Of A Ligand-Bound Form Of The Rice Cell
Wall Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 53 GMNSTAIRLANEGYACYGIDYQGHGKS 79
G + RLA++GY G DY G GKS
Sbjct: 105 GDDPLVTRLASQGYVVVGSDYLGLGKS 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,507,659
Number of Sequences: 62578
Number of extensions: 309236
Number of successful extensions: 786
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 39
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)