Query 026556
Match_columns 237
No_of_seqs 138 out of 311
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 09:33:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 1.1E-49 2.3E-54 313.8 7.8 101 80-180 1-101 (101)
2 COG3416 Uncharacterized protei 83.8 3.3 7.3E-05 37.9 6.3 67 120-186 11-77 (233)
3 PF09849 DUF2076: Uncharacteri 74.0 8.4 0.00018 35.3 5.8 63 121-183 12-74 (247)
4 PF06698 DUF1192: Protein of u 73.4 11 0.00024 27.9 5.2 31 159-189 23-53 (59)
5 PF13334 DUF4094: Domain of un 72.5 3.4 7.5E-05 32.7 2.6 25 155-179 71-95 (95)
6 PF07106 TBPIP: Tat binding pr 70.9 3.8 8.3E-05 34.1 2.7 81 107-187 21-109 (169)
7 KOG2391 Vacuolar sorting prote 70.6 48 0.001 32.4 10.2 31 25-55 133-163 (365)
8 PF10883 DUF2681: Protein of u 69.5 10 0.00022 30.0 4.6 34 159-192 32-65 (87)
9 PF09006 Surfac_D-trimer: Lung 67.2 13 0.00029 26.6 4.4 26 159-184 1-26 (46)
10 PRK00888 ftsB cell division pr 65.3 14 0.0003 29.5 4.7 38 153-190 21-60 (105)
11 PF12325 TMF_TATA_bd: TATA ele 64.9 20 0.00043 29.6 5.7 39 154-192 13-51 (120)
12 PRK10265 chaperone-modulator p 63.6 15 0.00032 28.9 4.5 33 153-185 67-99 (101)
13 PF04977 DivIC: Septum formati 63.5 23 0.0005 25.1 5.2 33 158-190 18-50 (80)
14 PRK10803 tol-pal system protei 61.3 17 0.00036 32.9 5.0 34 157-190 54-87 (263)
15 PF06305 DUF1049: Protein of u 57.1 22 0.00047 25.0 4.1 25 159-183 43-67 (68)
16 PF14282 FlxA: FlxA-like prote 54.0 25 0.00053 27.9 4.3 23 156-178 18-40 (106)
17 PF05308 Mito_fiss_reg: Mitoch 51.9 16 0.00034 33.6 3.3 19 164-182 122-140 (253)
18 COG5509 Uncharacterized small 51.8 40 0.00087 25.7 4.8 26 159-184 27-52 (65)
19 smart00338 BRLZ basic region l 51.2 62 0.0013 23.0 5.7 35 158-192 27-61 (65)
20 TIGR02209 ftsL_broad cell divi 50.0 42 0.00091 24.5 4.8 33 159-191 26-58 (85)
21 smart00150 SPEC Spectrin repea 49.0 81 0.0017 22.0 6.0 44 149-192 23-66 (101)
22 COG5665 NOT5 CCR4-NOT transcri 47.7 43 0.00094 33.7 5.7 77 149-227 111-191 (548)
23 PF14282 FlxA: FlxA-like prote 47.0 33 0.00071 27.3 4.0 25 163-187 50-74 (106)
24 cd04766 HTH_HspR Helix-Turn-He 46.4 37 0.0008 25.5 4.1 23 159-181 67-89 (91)
25 PF12097 DUF3573: Protein of u 46.1 23 0.0005 34.7 3.5 22 158-179 43-64 (383)
26 PRK10884 SH3 domain-containing 45.4 69 0.0015 28.5 6.2 31 159-189 134-164 (206)
27 PF11333 DUF3135: Protein of u 45.0 42 0.00091 26.1 4.3 66 104-173 15-82 (83)
28 PLN02523 galacturonosyltransfe 45.0 64 0.0014 33.2 6.6 55 123-182 145-201 (559)
29 PRK09039 hypothetical protein; 44.5 49 0.0011 31.2 5.4 30 157-186 137-166 (343)
30 PF05529 Bap31: B-cell recepto 44.3 36 0.00079 28.8 4.2 35 157-191 154-188 (192)
31 PF05120 GvpG: Gas vesicle pro 44.2 28 0.00061 27.0 3.2 36 151-186 8-43 (79)
32 PF13600 DUF4140: N-terminal d 43.6 55 0.0012 24.9 4.7 32 156-187 69-100 (104)
33 PF05565 Sipho_Gp157: Siphovir 42.7 84 0.0018 26.5 6.1 75 121-199 13-89 (162)
34 PF06295 DUF1043: Protein of u 42.3 62 0.0013 26.4 5.1 34 159-192 27-60 (128)
35 PF13591 MerR_2: MerR HTH fami 42.3 31 0.00067 26.1 3.1 23 155-177 61-83 (84)
36 KOG1655 Protein involved in va 42.3 57 0.0012 29.9 5.2 23 113-140 2-24 (218)
37 PF12709 Kinetocho_Slk19: Cent 41.3 74 0.0016 25.4 5.1 38 157-194 49-86 (87)
38 cd01111 HTH_MerD Helix-Turn-He 41.2 78 0.0017 24.9 5.3 29 155-183 78-106 (107)
39 PF04977 DivIC: Septum formati 40.7 55 0.0012 23.2 4.0 27 165-191 18-44 (80)
40 COG3074 Uncharacterized protei 40.6 68 0.0015 25.2 4.7 38 154-191 15-52 (79)
41 KOG4552 Vitamin-D-receptor int 40.2 66 0.0014 30.0 5.4 57 111-175 47-106 (272)
42 PRK06798 fliD flagellar cappin 39.7 1.6E+02 0.0034 28.9 8.1 26 158-183 380-405 (440)
43 PRK10803 tol-pal system protei 39.2 52 0.0011 29.8 4.6 34 157-190 61-94 (263)
44 TIGR02894 DNA_bind_RsfA transc 38.4 80 0.0017 27.7 5.4 36 159-194 113-148 (161)
45 PF00831 Ribosomal_L29: Riboso 37.6 52 0.0011 23.5 3.5 23 166-188 9-31 (58)
46 PF06818 Fez1: Fez1; InterPro 37.5 57 0.0012 29.5 4.5 31 156-186 9-39 (202)
47 KOG0162 Myosin class I heavy c 37.0 74 0.0016 34.6 5.8 14 93-106 1052-1065(1106)
48 smart00338 BRLZ basic region l 37.0 94 0.002 22.0 4.7 31 156-186 32-62 (65)
49 PHA02562 46 endonuclease subun 36.9 48 0.001 31.8 4.2 11 130-140 149-159 (562)
50 PHA02047 phage lambda Rz1-like 36.5 1.1E+02 0.0023 25.3 5.4 39 154-192 18-62 (101)
51 PRK13922 rod shape-determining 36.0 1E+02 0.0022 27.5 5.8 39 144-182 53-94 (276)
52 PF15290 Syntaphilin: Golgi-lo 35.9 3.2E+02 0.0069 26.4 9.3 32 131-166 64-98 (305)
53 PRK14127 cell division protein 35.8 87 0.0019 25.6 4.9 25 158-182 45-69 (109)
54 PF04728 LPP: Lipoprotein leuc 35.6 85 0.0018 23.2 4.4 22 159-180 12-33 (56)
55 TIGR03021 pilP_fam type IV pil 35.4 60 0.0013 26.6 4.0 24 156-179 4-27 (119)
56 TIGR00012 L29 ribosomal protei 35.4 57 0.0012 23.1 3.4 23 166-188 7-29 (55)
57 PF07334 IFP_35_N: Interferon- 35.2 60 0.0013 25.3 3.7 26 158-183 1-26 (76)
58 PF00435 Spectrin: Spectrin re 34.9 1.6E+02 0.0034 20.5 7.1 58 135-192 11-69 (105)
59 CHL00154 rpl29 ribosomal prote 34.9 56 0.0012 24.4 3.4 23 166-188 14-36 (67)
60 PF08657 DASH_Spc34: DASH comp 34.5 75 0.0016 29.3 4.8 38 149-186 172-209 (259)
61 PF00170 bZIP_1: bZIP transcri 34.0 1.4E+02 0.003 21.1 5.2 33 158-190 27-59 (64)
62 PRK15422 septal ring assembly 33.3 1.9E+02 0.0041 22.9 6.2 33 156-188 17-49 (79)
63 PF14197 Cep57_CLD_2: Centroso 32.3 91 0.002 23.4 4.2 33 154-186 37-69 (69)
64 PF03242 LEA_3: Late embryogen 31.6 18 0.00038 28.9 0.3 20 141-160 58-77 (93)
65 cd00427 Ribosomal_L29_HIP Ribo 31.2 73 0.0016 22.6 3.4 22 167-188 9-30 (57)
66 PF02996 Prefoldin: Prefoldin 31.0 1.6E+02 0.0034 22.6 5.5 37 158-194 78-114 (120)
67 PRK14149 heat shock protein Gr 30.8 89 0.0019 27.8 4.6 30 157-186 43-72 (191)
68 PF04065 Not3: Not1 N-terminal 30.8 1.7E+02 0.0037 26.8 6.5 50 157-206 129-199 (233)
69 TIGR02231 conserved hypothetic 30.5 97 0.0021 30.3 5.1 31 158-188 72-102 (525)
70 PF07716 bZIP_2: Basic region 30.0 1.4E+02 0.003 20.7 4.6 26 159-184 27-52 (54)
71 PRK11677 hypothetical protein; 29.9 1.5E+02 0.0033 25.0 5.6 36 158-193 30-65 (134)
72 PF05064 Nsp1_C: Nsp1-like C-t 29.8 1.5E+02 0.0032 23.9 5.3 61 133-194 34-94 (116)
73 PF12808 Mto2_bdg: Micro-tubul 29.6 2E+02 0.0043 20.9 5.4 43 134-177 7-49 (52)
74 TIGR02209 ftsL_broad cell divi 29.3 1.2E+02 0.0026 22.1 4.4 34 159-192 19-52 (85)
75 COG3105 Uncharacterized protei 29.2 3.3E+02 0.0072 23.5 7.5 36 160-195 37-72 (138)
76 PF04999 FtsL: Cell division p 28.8 1.4E+02 0.0031 22.5 4.9 35 159-193 37-71 (97)
77 PF06005 DUF904: Protein of un 28.7 1.2E+02 0.0026 22.9 4.4 23 154-176 15-37 (72)
78 TIGR00293 prefoldin, archaeal 28.5 1.3E+02 0.0029 23.6 4.8 28 161-188 3-30 (126)
79 PRK14549 50S ribosomal protein 28.5 83 0.0018 23.5 3.4 24 166-189 14-37 (69)
80 PF04012 PspA_IM30: PspA/IM30 28.4 1.6E+02 0.0034 25.3 5.6 17 136-152 9-25 (221)
81 PRK00461 rpmC 50S ribosomal pr 28.4 78 0.0017 24.9 3.4 22 167-188 11-32 (87)
82 PF15300 INT_SG_DDX_CT_C: INTS 28.1 56 0.0012 24.6 2.4 26 120-145 24-51 (65)
83 PF08227 DASH_Hsk3: DASH compl 28.0 2.1E+02 0.0045 20.3 5.1 28 159-186 4-31 (45)
84 PF08286 Spc24: Spc24 subunit 27.9 21 0.00045 28.5 0.1 32 158-189 14-45 (118)
85 PRK14161 heat shock protein Gr 27.5 99 0.0021 27.0 4.2 29 158-186 27-55 (178)
86 PF04340 DUF484: Protein of un 27.4 1.7E+02 0.0038 25.3 5.7 56 119-183 9-66 (225)
87 KOG4196 bZIP transcription fac 27.3 1E+02 0.0022 26.6 4.1 18 132-149 54-71 (135)
88 PF15397 DUF4618: Domain of un 27.1 95 0.0021 29.0 4.2 55 120-182 52-106 (258)
89 PRK14141 heat shock protein Gr 27.0 1E+02 0.0022 27.8 4.2 30 158-187 39-68 (209)
90 PRK10963 hypothetical protein; 26.9 2.6E+02 0.0057 24.6 6.8 56 119-183 6-63 (223)
91 PRK00306 50S ribosomal protein 26.5 99 0.0021 22.6 3.5 23 166-188 11-33 (66)
92 PRK14623 hypothetical protein; 26.5 83 0.0018 25.5 3.3 28 159-186 3-30 (106)
93 PRK10884 SH3 domain-containing 26.4 2.6E+02 0.0056 24.9 6.7 25 155-179 91-115 (206)
94 PRK14625 hypothetical protein; 26.3 83 0.0018 25.6 3.3 28 159-186 4-31 (109)
95 PRK14626 hypothetical protein; 26.3 94 0.002 25.2 3.6 30 157-186 5-34 (110)
96 PF11853 DUF3373: Protein of u 26.1 91 0.002 31.6 4.2 33 150-183 18-50 (489)
97 PRK14127 cell division protein 26.0 1.2E+02 0.0027 24.8 4.3 32 158-189 38-69 (109)
98 PF04420 CHD5: CHD5-like prote 26.0 1.4E+02 0.003 25.2 4.7 48 138-189 50-98 (161)
99 PF04706 Dickkopf_N: Dickkopf 25.7 28 0.0006 25.1 0.4 16 79-94 21-36 (52)
100 cd00584 Prefoldin_alpha Prefol 25.6 1.6E+02 0.0035 23.2 4.8 29 161-189 3-31 (129)
101 PF06295 DUF1043: Protein of u 25.4 93 0.002 25.4 3.5 29 164-192 25-53 (128)
102 PRK14147 heat shock protein Gr 25.4 1.2E+02 0.0025 26.4 4.2 30 158-187 26-55 (172)
103 PF12325 TMF_TATA_bd: TATA ele 25.2 2.1E+02 0.0047 23.6 5.6 30 157-186 30-59 (120)
104 PF15483 DUF4641: Domain of un 25.1 72 0.0016 32.0 3.2 28 153-181 415-442 (445)
105 PF02185 HR1: Hr1 repeat; Int 25.0 2E+02 0.0044 20.7 4.9 27 158-184 34-60 (70)
106 PRK14622 hypothetical protein; 25.0 99 0.0021 24.8 3.5 28 159-186 3-30 (103)
107 COG5509 Uncharacterized small 24.8 82 0.0018 24.0 2.8 19 159-177 34-52 (65)
108 PF06696 Strep_SA_rep: Strepto 24.8 1.9E+02 0.0041 18.3 4.0 21 162-182 3-23 (25)
109 COG5314 Conjugal transfer/entr 24.7 1.8E+02 0.0038 27.4 5.5 25 159-183 53-77 (252)
110 PF10883 DUF2681: Protein of u 24.7 2E+02 0.0043 22.8 5.1 27 159-185 18-44 (87)
111 PRK11239 hypothetical protein; 24.5 1.2E+02 0.0026 27.9 4.3 31 156-186 182-212 (215)
112 PF14257 DUF4349: Domain of un 24.2 1.5E+02 0.0033 26.2 4.9 6 230-235 213-218 (262)
113 PF05546 She9_MDM33: She9 / Md 24.1 2.1E+02 0.0045 26.1 5.7 48 141-190 18-65 (207)
114 PF03357 Snf7: Snf7; InterPro 24.0 3.7E+02 0.0081 21.4 7.0 40 159-198 10-49 (171)
115 PRK14164 heat shock protein Gr 23.9 1.6E+02 0.0034 26.8 4.9 34 155-188 75-108 (218)
116 PRK02793 phi X174 lysis protei 23.9 1.5E+02 0.0033 22.2 4.1 13 162-174 6-18 (72)
117 PRK14155 heat shock protein Gr 23.8 1.2E+02 0.0027 27.1 4.2 31 156-186 19-49 (208)
118 PF01025 GrpE: GrpE; InterPro 23.8 1.4E+02 0.0031 24.3 4.4 27 159-185 20-46 (165)
119 PRK03947 prefoldin subunit alp 23.8 2.3E+02 0.0049 22.8 5.4 34 159-192 8-41 (140)
120 PF11471 Sugarporin_N: Maltopo 23.6 1.7E+02 0.0037 21.5 4.2 26 161-186 29-54 (60)
121 PRK09039 hypothetical protein; 23.5 1.7E+02 0.0038 27.6 5.4 20 159-178 146-165 (343)
122 PRK00888 ftsB cell division pr 23.4 1.4E+02 0.0031 23.7 4.1 28 165-192 28-55 (105)
123 PRK14156 heat shock protein Gr 23.3 1.5E+02 0.0032 26.0 4.5 46 133-187 19-64 (177)
124 PF11559 ADIP: Afadin- and alp 23.1 3.5E+02 0.0076 22.0 6.5 29 159-187 68-96 (151)
125 COG2919 Septum formation initi 23.0 2.1E+02 0.0046 23.0 5.1 35 156-190 49-83 (117)
126 PF11471 Sugarporin_N: Maltopo 22.9 1.6E+02 0.0034 21.7 3.9 26 158-183 33-58 (60)
127 PF11853 DUF3373: Protein of u 22.8 57 0.0012 33.0 2.1 25 163-188 24-48 (489)
128 PRK10698 phage shock protein P 22.7 2.7E+02 0.0058 24.8 6.1 43 136-178 10-52 (222)
129 PRK14624 hypothetical protein; 22.6 1.1E+02 0.0023 25.3 3.3 30 157-186 6-35 (115)
130 PRK00587 hypothetical protein; 22.5 1.2E+02 0.0027 24.3 3.6 30 159-188 3-32 (99)
131 PF13793 Pribosyltran_N: N-ter 22.5 58 0.0013 26.2 1.8 45 82-127 69-114 (116)
132 PRK14162 heat shock protein Gr 22.5 1.4E+02 0.003 26.6 4.2 35 154-188 43-77 (194)
133 PF11336 DUF3138: Protein of u 22.5 1E+02 0.0022 31.4 3.7 26 157-182 25-50 (514)
134 PRK14154 heat shock protein Gr 22.5 1.4E+02 0.003 27.0 4.2 29 158-186 60-88 (208)
135 PRK14140 heat shock protein Gr 22.4 1.4E+02 0.003 26.5 4.2 29 158-186 45-73 (191)
136 PRK14153 heat shock protein Gr 22.4 1.4E+02 0.003 26.6 4.2 29 158-186 41-69 (194)
137 PF04508 Pox_A_type_inc: Viral 22.3 1.4E+02 0.003 18.6 3.0 18 159-176 3-20 (23)
138 PRK14151 heat shock protein Gr 22.3 1.4E+02 0.0031 25.9 4.2 32 157-188 27-58 (176)
139 PRK15396 murein lipoprotein; P 22.3 1.3E+02 0.0029 23.3 3.6 28 158-185 26-53 (78)
140 TIGR02977 phageshock_pspA phag 22.3 2.9E+02 0.0062 24.2 6.1 45 135-179 9-53 (219)
141 PF04728 LPP: Lipoprotein leuc 22.2 3E+02 0.0065 20.4 5.2 26 159-184 5-30 (56)
142 PF13600 DUF4140: N-terminal d 22.2 1.5E+02 0.0032 22.6 3.9 24 159-182 79-102 (104)
143 COG0576 GrpE Molecular chapero 22.0 1.6E+02 0.0035 25.8 4.6 30 157-186 43-72 (193)
144 PF10186 Atg14: UV radiation r 21.7 1.8E+02 0.0038 25.3 4.7 16 81-96 2-18 (302)
145 PRK02119 hypothetical protein; 21.5 1.8E+02 0.0038 21.9 4.1 17 159-175 4-20 (73)
146 PRK04406 hypothetical protein; 21.4 1.8E+02 0.0038 22.1 4.1 16 160-175 7-22 (75)
147 PF11559 ADIP: Afadin- and alp 21.3 2.1E+02 0.0045 23.3 4.8 82 114-195 29-111 (151)
148 PF04849 HAP1_N: HAP1 N-termin 21.1 1.2E+02 0.0026 29.0 3.8 85 109-195 153-244 (306)
149 COG0255 RpmC Ribosomal protein 21.1 1.4E+02 0.003 22.7 3.4 21 161-181 15-35 (69)
150 TIGR00219 mreC rod shape-deter 21.0 2.6E+02 0.0055 25.8 5.8 21 161-181 70-90 (283)
151 PRK14139 heat shock protein Gr 21.0 1.5E+02 0.0032 26.2 4.1 36 151-186 33-68 (185)
152 PRK14157 heat shock protein Gr 20.9 1.5E+02 0.0033 27.2 4.2 32 155-186 82-113 (227)
153 cd00890 Prefoldin Prefoldin is 20.8 1.2E+02 0.0026 23.4 3.1 54 139-192 58-122 (129)
154 TIGR00293 prefoldin, archaeal 20.6 3.2E+02 0.0069 21.4 5.6 37 157-193 86-122 (126)
155 cd00089 HR1 Protein kinase C-r 20.4 2.7E+02 0.0059 20.2 4.8 28 157-184 42-69 (72)
156 COG1729 Uncharacterized protei 20.4 1.4E+02 0.003 27.9 4.0 29 158-187 57-85 (262)
157 PF11932 DUF3450: Protein of u 20.2 5.3E+02 0.011 22.8 7.4 12 175-186 81-92 (251)
158 PRK04325 hypothetical protein; 20.1 2.1E+02 0.0046 21.5 4.3 12 163-174 8-19 (74)
159 PF11932 DUF3450: Protein of u 20.1 2.5E+02 0.0055 24.8 5.4 37 158-194 71-107 (251)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=1.1e-49 Score=313.77 Aligned_cols=101 Identities=63% Similarity=1.102 Sum_probs=99.5
Q ss_pred CChhhHHhhhcCccCCccCcCCCCCCCcchhHhhhhhchhhHHHHhhcCCccchHHHHHHHHHHhhccccCCCcccHHHH
Q 026556 80 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAI 159 (237)
Q Consensus 80 ~CAACK~lRRrC~~dCilAPYFP~~~~~~F~~vhKVFG~SNV~KmLq~lp~~qR~dAv~SLvYEA~aR~rDPVyGCvGiI 159 (237)
+|||||||||||+++|+||||||++++++|.+||||||++||+|||+++|+++|+++|+||+|||++|++||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026556 160 CHLQKQVSELQAQLAKAQAEL 180 (237)
Q Consensus 160 ~~Lq~qI~~LqaeLa~aqaeL 180 (237)
+.|++||+++++||+.+++||
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999875
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.76 E-value=3.3 Score=37.93 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=56.3
Q ss_pred hHHHHhhcCCccchHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 120 NIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 120 NV~KmLq~lp~~qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
|+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..++.+|+.++.+|+.++.-
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444566677779999999999999999999999999999988888888888888888888876553
No 3
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=74.00 E-value=8.4 Score=35.33 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=55.5
Q ss_pred HHHHhhcCCccchHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 121 IIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 121 V~KmLq~lp~~qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
+..-|+.+....|+.-+..||-|+-.|.-|-+|=-+-.|..++.=|++++++|..++.+|...
T Consensus 12 lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 12 LFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334477777778999999999999999999999999999999999999999999999998653
No 4
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=73.41 E-value=11 Score=27.93 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
|-.|+..|..|++|++++++++...+.+.+-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~A 53 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAA 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6689999999999999999999877665543
No 5
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=72.54 E-value=3.4 Score=32.70 Aligned_cols=25 Identities=44% Similarity=0.506 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 155 CAGAICHLQKQVSELQAQLAKAQAE 179 (237)
Q Consensus 155 CvGiI~~Lq~qI~~LqaeLa~aqae 179 (237)
-.-.|..|.+.|..||.||+.||++
T Consensus 71 Th~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 71 THEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3446888999999999999988864
No 6
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.89 E-value=3.8 Score=34.14 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=50.3
Q ss_pred cchhHhhhhhchhhHHHHhhcCCccch---HHHHHHHHHHhhccccCCCccc-----HHHHHHHHHHHHHHHHHHHHHHH
Q 026556 107 YKFTIAHRVFGASNIIKFLQELPESQR---ADAVSSMVYEASARIRDPVYGC-----AGAICHLQKQVSELQAQLAKAQA 178 (237)
Q Consensus 107 ~~F~~vhKVFG~SNV~KmLq~lp~~qR---~dAv~SLvYEA~aR~rDPVyGC-----vGiI~~Lq~qI~~LqaeLa~aqa 178 (237)
.-|.++|.-||-..|.|.|..|-.+.+ ...=...||=++--.-+-+..- =.-|..|+.++..|+.++..+++
T Consensus 21 di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~ 100 (169)
T PF07106_consen 21 DIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEA 100 (169)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999865533 1333445666654443322221 12356666666666666666666
Q ss_pred HHHHhhhhh
Q 026556 179 ELVTMESQQ 187 (237)
Q Consensus 179 eL~~~q~q~ 187 (237)
+|..+..+-
T Consensus 101 eL~~L~~~~ 109 (169)
T PF07106_consen 101 ELASLSSEP 109 (169)
T ss_pred HHHHHhcCC
Confidence 666655443
No 7
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.59 E-value=48 Score=32.43 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=22.9
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 026556 25 STFSTSPPSQSSPRFPSPNHQQLSSPESSPS 55 (237)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (237)
.+|+.-+|..|.++-..|+-...++-.+.++
T Consensus 133 a~f~~~pP~ys~~~~~~p~p~p~~~~~~~p~ 163 (365)
T KOG2391|consen 133 AAFSEDPPVYSRSLPSPPPPYPQTEYNTPPL 163 (365)
T ss_pred HHhcCCCccccCCCCCCCCCCCcccCCCCCC
Confidence 3578888988888877777777666666655
No 8
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=69.50 E-value=10 Score=30.00 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
|-.|+.+.++|+.|.+.+++|+.+++.++-|.-.
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~ 65 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQKNEEN 65 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 5667777777777778888888888777766544
No 9
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=67.20 E-value=13 Score=26.56 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
|..|.+|+..|+.+|..+|+-+..|+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999888877664
No 10
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=65.31 E-value=14 Score=29.48 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=27.0
Q ss_pred cccHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 026556 153 YGCAG--AICHLQKQVSELQAQLAKAQAELVTMESQQRNL 190 (237)
Q Consensus 153 yGCvG--iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l 190 (237)
+|--| .+.+|++++..++.+++.++++...++.+-..|
T Consensus 21 ~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 21 FGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444 477888888888888888887777776665544
No 11
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.94 E-value=20 Score=29.59 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 154 GCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 154 GCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
..+++|..|+.+|.+++.|++.+|.++..+..+...+.+
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~ 51 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELRE 51 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999888877766554
No 12
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=63.61 E-value=15 Score=28.88 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026556 153 YGCAGAICHLQKQVSELQAQLAKAQAELVTMES 185 (237)
Q Consensus 153 yGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~ 185 (237)
+-.+++|..|-.||+.|++|+..++.+|..|..
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~~~~ 99 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346889999999999999999999998877643
No 13
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=63.47 E-value=23 Score=25.14 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNL 190 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l 190 (237)
.+..+++++..++.+++.++.+...++.+-..|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777788888888888777777776665555
No 14
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=61.35 E-value=17 Score=32.94 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQRNL 190 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l 190 (237)
..+..|++||+.||.|++.+|-++...+.|-..+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3567889999999999988888877655554443
No 15
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.12 E-value=22 Score=25.05 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
...+++++.+++.+++.++.|+...
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777777777654
No 16
>PF14282 FlxA: FlxA-like protein
Probab=54.02 E-value=25 Score=27.95 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026556 156 AGAICHLQKQVSELQAQLAKAQA 178 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqa 178 (237)
-..|..|++||..|+.+|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56788888888888888876655
No 17
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=51.94 E-value=16 Score=33.63 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026556 164 KQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 164 ~qI~~LqaeLa~aqaeL~~ 182 (237)
++|..||.||+.+|+||+.
T Consensus 122 qKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666654
No 18
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=51.75 E-value=40 Score=25.66 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
|-.|.+.|..||+|++++++|+....
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677888888888888888887643
No 19
>smart00338 BRLZ basic region leucin zipper.
Probab=51.21 E-value=62 Score=22.95 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
.|..|+.++..|+.+...++.++..++.+...|-.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777776666655555443
No 20
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=50.04 E-value=42 Score=24.53 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRNLI 191 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~ 191 (237)
+..++.++..++.++..+++|...++.+.+.|.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555555555555555555555555555444
No 21
>smart00150 SPEC Spectrin repeats.
Probab=48.98 E-value=81 Score=22.00 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=35.5
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 149 RDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 149 rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
.+++.+.+..|..+.++...++.++...+..+..+......|+.
T Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~ 66 (101)
T smart00150 23 SEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIE 66 (101)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999888888877666655554
No 22
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=47.73 E-value=43 Score=33.67 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=48.6
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH-HhhhhhHHHHHHHHhhhcccccC---Cceeec
Q 026556 149 RDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLIC-MEMAQSQEQVLQQQQQQQQQFMD---TSCFLD 224 (237)
Q Consensus 149 rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 224 (237)
||-|.=....+-.||+|++..++| ....++.++..++++|--++- ++.++-..+.+.+|+-.--+|++ +-.|.+
T Consensus 111 ~d~i~~i~~~~~el~~q~e~~ea~--e~e~~~erh~~h~~~le~i~~~l~n~~~~pe~v~~~q~di~yyve~~~~~df~e 188 (548)
T COG5665 111 RDQVLFIHDCLDELQKQLEQYEAQ--ENEEQTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIE 188 (548)
T ss_pred ccceehHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHhhcCCCcchhh
Confidence 455555556677899999888887 455667788888888766543 33333336666677666555533 344555
Q ss_pred CCC
Q 026556 225 DNG 227 (237)
Q Consensus 225 ~~~ 227 (237)
+.+
T Consensus 189 ~~~ 191 (548)
T COG5665 189 YDT 191 (548)
T ss_pred hhh
Confidence 543
No 23
>PF14282 FlxA: FlxA-like protein
Probab=47.05 E-value=33 Score=27.26 Aligned_cols=25 Identities=44% Similarity=0.586 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 026556 163 QKQVSELQAQLAKAQAELVTMESQQ 187 (237)
Q Consensus 163 q~qI~~LqaeLa~aqaeL~~~q~q~ 187 (237)
+.++..|+++|..++++|+.++.|.
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 24
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=46.41 E-value=37 Score=25.50 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
|..|..|++.|+++|+.++++|.
T Consensus 67 ~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 67 ILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34488888888888888877763
No 25
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=46.07 E-value=23 Score=34.71 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAE 179 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqae 179 (237)
.|.+||+||..||+||..++.+
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777777666554
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.42 E-value=69 Score=28.49 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
|..|+.+.++|+.||..+++++..++.+...
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557777777777777777777655444333
No 27
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=45.05 E-value=42 Score=26.10 Aligned_cols=66 Identities=18% Similarity=0.285 Sum_probs=48.2
Q ss_pred CCCcchhHhhhhhchhhHHHHhhcCCccch--HHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHH
Q 026556 104 TEPYKFTIAHRVFGASNIIKFLQELPESQR--ADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQL 173 (237)
Q Consensus 104 ~~~~~F~~vhKVFG~SNV~KmLq~lp~~qR--~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeL 173 (237)
++|+.|....+ .-|-.++...|++.| -.++.+-|==--.|.++|+..|+-+...++.++..++..|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 35777776533 456678888998754 3444454555557889999999999999999998887655
No 28
>PLN02523 galacturonosyltransferase
Probab=44.99 E-value=64 Score=33.22 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=43.8
Q ss_pred HHhhcCCcc--chHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 123 KFLQELPES--QRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 123 KmLq~lp~~--qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
..|++||.+ +|-.+|+.++++|.. +|-|..+|.+|+..|..+++++..++.+-+-
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~ 201 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAF 201 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777754 678999999999993 4557789999999999999999887765543
No 29
>PRK09039 hypothetical protein; Validated
Probab=44.54 E-value=49 Score=31.24 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
-.|..|++||+.|+.||+.++++|...+.+
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888888888887777777654444
No 30
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.35 E-value=36 Score=28.83 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQRNLI 191 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~ 191 (237)
+....+..+|++++.||..++.++..++.|-.++.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888888888888877764
No 31
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=44.18 E-value=28 Score=27.00 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=21.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 151 PVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 151 PVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
||.|.+-+.-+++.+.++--.+-+.+|.+|..++.+
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~~ 43 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAELQEA 43 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 666655555555555544433446777777776554
No 32
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=43.56 E-value=55 Score=24.95 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQQ 187 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~ 187 (237)
-..+..|+.+|..++.+++.++.++..++.+.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788899999999999988888887766554
No 33
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=42.71 E-value=84 Score=26.52 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=55.1
Q ss_pred HHHHhhc--CCccchHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 026556 121 IIKFLQE--LPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEM 198 (237)
Q Consensus 121 V~KmLq~--lp~~qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~~~~~ 198 (237)
+..++.+ ++++.-.|++.+| ...+.|-+-|++.+|..|+-.+..+++|..++++.-..++-+...|-..+--.|
T Consensus 13 l~~~~e~~~~d~e~~~dtLe~i----~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m 88 (162)
T PF05565_consen 13 LLELLEEGDLDEEAIADTLESI----EDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAM 88 (162)
T ss_pred HHHHHhcCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 3444555666663 445667889999999999999999999999998888888888777777766444
Q ss_pred h
Q 026556 199 A 199 (237)
Q Consensus 199 ~ 199 (237)
.
T Consensus 89 ~ 89 (162)
T PF05565_consen 89 E 89 (162)
T ss_pred H
Confidence 4
No 34
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.32 E-value=62 Score=26.43 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
...|+++|++.+.||+.-|.++..+=.+-+.|+.
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~ 60 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLD 60 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666677776666666666666666665
No 35
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=42.29 E-value=31 Score=26.07 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 026556 155 CAGAICHLQKQVSELQAQLAKAQ 177 (237)
Q Consensus 155 CvGiI~~Lq~qI~~LqaeLa~aq 177 (237)
.+++|.+|-.+|..|+.||..++
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999998765
No 36
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.25 E-value=57 Score=29.90 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=14.2
Q ss_pred hhhhchhhHHHHhhcCCccchHHHHHHH
Q 026556 113 HRVFGASNIIKFLQELPESQRADAVSSM 140 (237)
Q Consensus 113 hKVFG~SNV~KmLq~lp~~qR~dAv~SL 140 (237)
||+||+.+- ..|+..-.++..++
T Consensus 2 nRiFG~~k~-----k~p~psL~dai~~v 24 (218)
T KOG1655|consen 2 NRIFGRGKP-----KEPPPSLQDAIDSV 24 (218)
T ss_pred cccccCCCC-----CCCChhHHHHHHHH
Confidence 799998862 24444444555555
No 37
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=41.26 E-value=74 Score=25.37 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLI 194 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~ 194 (237)
.-|..|+.++..+..|...++.+|...+..-..|+.++
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45777888888888888888888877776666666653
No 38
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=41.22 E-value=78 Score=24.94 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 155 CAGAICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 155 CvGiI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
|...+..+..+|++.+++|+.++.+|..+
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888888888888888887654
No 39
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.65 E-value=55 Score=23.21 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 026556 165 QVSELQAQLAKAQAELVTMESQQRNLI 191 (237)
Q Consensus 165 qI~~LqaeLa~aqaeL~~~q~q~a~l~ 191 (237)
++..++.+++.++.++..++.....|-
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~ 44 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELK 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666655555554443
No 40
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.64 E-value=68 Score=25.21 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 026556 154 GCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLI 191 (237)
Q Consensus 154 GCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~ 191 (237)
-++-.|..||-+|++|+.+-..+..|....+.+...|.
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 35678889999999999988888888887777766654
No 41
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=40.19 E-value=66 Score=30.01 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=37.1
Q ss_pred Hhhhhhchh--hHHHHhhcCCcc-chHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHH
Q 026556 111 IAHRVFGAS--NIIKFLQELPES-QRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAK 175 (237)
Q Consensus 111 ~vhKVFG~S--NV~KmLq~lp~~-qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~ 175 (237)
++-++|-.. -+.+||+-+|+. +|+.+|+.|--+.+.|.+ .|.+||.++...+.-|+.
T Consensus 47 ~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~--------~IQqLqk~LK~aE~iLtt 106 (272)
T KOG4552|consen 47 NILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDE--------VIQQLQKNLKSAEVILTT 106 (272)
T ss_pred HHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHH
Confidence 344444433 455666666644 688999988555555543 599999998887766653
No 42
>PRK06798 fliD flagellar capping protein; Validated
Probab=39.72 E-value=1.6e+02 Score=28.93 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
.+..|+.+|..++.+++.....+..+
T Consensus 380 r~~~l~~~i~~l~~~~~~~e~rl~~~ 405 (440)
T PRK06798 380 RSKSIDNRVSKLDLKITDIDTQNKQK 405 (440)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777766543
No 43
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.17 E-value=52 Score=29.79 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQRNL 190 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l 190 (237)
.-|..||++|.+|+.++...+-+|..++.++..+
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666555555543
No 44
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.44 E-value=80 Score=27.72 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLI 194 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~ 194 (237)
+..|+.++..|+.++..++.++..++.....|+.++
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888877777777777763
No 45
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=37.55 E-value=52 Score=23.48 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a 188 (237)
..+|+.+|..++.+|.++++|++
T Consensus 9 ~~eL~~~l~elk~eL~~Lr~q~~ 31 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLRFQKA 31 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777765
No 46
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=37.50 E-value=57 Score=29.46 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
.|-|+-|++|+.+.|+|++.=-.||+.++.|
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~q 39 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQ 39 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5899999999999999998766777766665
No 47
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=36.98 E-value=74 Score=34.56 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=6.2
Q ss_pred cCCccCcCCCCCCC
Q 026556 93 EKCVLAPYFPPTEP 106 (237)
Q Consensus 93 ~dCilAPYFP~~~~ 106 (237)
+-|.-+--|++.++
T Consensus 1052 p~~~A~Y~y~gq~~ 1065 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDV 1065 (1106)
T ss_pred cceeeeccCCCCCc
Confidence 34444444554443
No 48
>smart00338 BRLZ basic region leucin zipper.
Probab=36.96 E-value=94 Score=22.04 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
-+-|..|+.+...|+.++..++.++..+..+
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777665443
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=36.93 E-value=48 Score=31.78 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=5.7
Q ss_pred ccchHHHHHHH
Q 026556 130 ESQRADAVSSM 140 (237)
Q Consensus 130 ~~qR~dAv~SL 140 (237)
+..|..++..|
T Consensus 149 ~~er~~il~~l 159 (562)
T PHA02562 149 APARRKLVEDL 159 (562)
T ss_pred hHhHHHHHHHH
Confidence 34555555555
No 50
>PHA02047 phage lambda Rz1-like protein
Probab=36.50 E-value=1.1e+02 Score=25.28 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=29.0
Q ss_pred ccHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 154 GCAGAIC------HLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 154 GCvGiI~------~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
|.+|.+. ..++..+++.++|..++.++..||.|-..|-+
T Consensus 18 ~~y~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~ 62 (101)
T PHA02047 18 ASYGFVQSYRALGIAHEEAKRQTARLEALEVRYATLQRHVQAVEA 62 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 33668889999999999999999877666554
No 51
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=36.04 E-value=1e+02 Score=27.46 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=20.1
Q ss_pred hhccccCCCcccHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 144 ASARIRDPVYGCAG---AICHLQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 144 A~aR~rDPVyGCvG---iI~~Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
+-.+..+.+.+.+. -+..|+.+.++|++|++.++.++..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~ 94 (276)
T PRK13922 53 VVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQE 94 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333 2445555666666666666665553
No 52
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.89 E-value=3.2e+02 Score=26.38 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=16.3
Q ss_pred cchHHHHHH---HHHHhhccccCCCcccHHHHHHHHHHH
Q 026556 131 SQRADAVSS---MVYEASARIRDPVYGCAGAICHLQKQV 166 (237)
Q Consensus 131 ~qR~dAv~S---LvYEA~aR~rDPVyGCvGiI~~Lq~qI 166 (237)
.|++-+++- -+-|..-|+.| -=-.|-.|+.||
T Consensus 64 QQKEV~iRHLkakLkes~~~l~d----RetEI~eLksQL 98 (305)
T PF15290_consen 64 QQKEVCIRHLKAKLKESENRLHD----RETEIDELKSQL 98 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHH
Confidence 344444433 36666666666 223455555555
No 53
>PRK14127 cell division protein GpsB; Provisional
Probab=35.76 E-value=87 Score=25.65 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
.+..|+.++..|+.+|+..+.++..
T Consensus 45 e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 45 EIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444555555555555555444443
No 54
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=35.62 E-value=85 Score=23.21 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAEL 180 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL 180 (237)
|..|..+|.+|..++..++.++
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444
No 55
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=35.44 E-value=60 Score=26.62 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAE 179 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqae 179 (237)
+|-+..||.|...+++++++++++
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq 27 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQ 27 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888877665543
No 56
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=35.43 E-value=57 Score=23.09 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a 188 (237)
..+|+++|..++.||.++++|++
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr~~~~ 29 (55)
T TIGR00012 7 KEELAKKLDELKKELFELRFQKA 29 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777654
No 57
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=35.18 E-value=60 Score=25.28 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
+|..|+.+..+|+.+|.++.+||...
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888889999998888888653
No 58
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=34.94 E-value=1.6e+02 Score=20.51 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhccc-cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 135 DAVSSMVYEASARI-RDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 135 dAv~SLvYEA~aR~-rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
+.+..-+-++...+ ..++.+-+..+..+..++..++.++...+.++..+......|..
T Consensus 11 ~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~ 69 (105)
T PF00435_consen 11 DELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID 69 (105)
T ss_dssp HHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555 44458899999999999999999999999988888766666543
No 59
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=34.85 E-value=56 Score=24.44 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a 188 (237)
+++|+++|..++.||-++++|++
T Consensus 14 ~~eL~~~l~elk~elf~LRfq~a 36 (67)
T CHL00154 14 DSEISEEIIKTKKELFDLRLKKA 36 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888887765
No 60
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=34.46 E-value=75 Score=29.33 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=32.6
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 149 RDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 149 rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
.-|+.|.-..|..|.++...+.++++..+++++..+.|
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~q 209 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQ 209 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999998764433
No 61
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.96 E-value=1.4e+02 Score=21.14 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNL 190 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l 190 (237)
.|..|+.++..|+.+...++.++..++..-..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776666665554444
No 62
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.28 E-value=1.9e+02 Score=22.86 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a 188 (237)
+-.|.-||-+|++|+.+-..+..+...++..+.
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~ 49 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344555555555555555444444444333333
No 63
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.27 E-value=91 Score=23.38 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 154 GCAGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 154 GCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
|.+.-+...-..+.+|++|+..++.||..++.|
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 444445556666777777777777776665543
No 64
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=31.64 E-value=18 Score=28.86 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=16.4
Q ss_pred HHHhhccccCCCcccHHHHH
Q 026556 141 VYEASARIRDPVYGCAGAIC 160 (237)
Q Consensus 141 vYEA~aR~rDPVyGCvGiI~ 160 (237)
-+|-..|.+|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56778999999999986654
No 65
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=31.24 E-value=73 Score=22.59 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 026556 167 SELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 167 ~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.+|+.+|..++.||..+++|++
T Consensus 9 ~eL~~~l~~l~~elf~Lr~q~~ 30 (57)
T cd00427 9 EELQEKLDELKKELFNLRFQKA 30 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777776654
No 66
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=30.99 E-value=1.6e+02 Score=22.64 Aligned_cols=37 Identities=35% Similarity=0.486 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLI 194 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~ 194 (237)
.+..|+.++..++.++...+.++..++.+-..+...+
T Consensus 78 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 78 AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTL 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888888877776666543
No 67
>PRK14149 heat shock protein GrpE; Provisional
Probab=30.77 E-value=89 Score=27.78 Aligned_cols=30 Identities=7% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
..|..|+.++.+++..+.++++++.||+--
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR 72 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKR 72 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999987654
No 68
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.76 E-value=1.7e+02 Score=26.77 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------------HHHHHhhhhhhhhHHHHH-HhhhhhHHHHH
Q 026556 157 GAICHLQKQVSELQAQLAKAQ--------------------AELVTMESQQRNLITLIC-MEMAQSQEQVL 206 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aq--------------------aeL~~~q~q~a~l~~~~~-~~~~~~~~~~~ 206 (237)
..|..|..||..+++|+..+. ..+.+++.+..+|-.|+- ++........+
T Consensus 129 ~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V 199 (233)
T PF04065_consen 129 DSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQV 199 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 478899999999999987433 344456666666666554 34444444433
No 69
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.47 E-value=97 Score=30.27 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.|..|+.+|.+++.+|+.+++++..++.+.+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 102 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAK 102 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888888888887777666543
No 70
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=30.02 E-value=1.4e+02 Score=20.70 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
+..|+.+|..|+.+...++.++..++
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666666655543
No 71
>PRK11677 hypothetical protein; Provisional
Probab=29.91 E-value=1.5e+02 Score=24.97 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLITL 193 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~ 193 (237)
....|+++|++.+.||..-|.|+..+=.+-|.|+.=
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~ 65 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELVSHFARSAELLDT 65 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666665566666653
No 72
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=29.82 E-value=1.5e+02 Score=23.86 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 026556 133 RADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLI 194 (237)
Q Consensus 133 R~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~ 194 (237)
+...|....-+-.+|.|-=|- .-..|..|+.++..++..=.++..+|..+..||..|-.++
T Consensus 34 q~k~F~~qA~~V~~wDr~Lv~-n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L 94 (116)
T PF05064_consen 34 QEKEFNEQATQVNAWDRQLVE-NGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELL 94 (116)
T ss_dssp ---------------TCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444432111 1235677777777777777777778888888888887765
No 73
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.60 E-value=2e+02 Score=20.92 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 026556 134 ADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQ 177 (237)
Q Consensus 134 ~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aq 177 (237)
.+...-|.-|=++|..|+ .|+---|..|..+...|+++|...|
T Consensus 7 ~ELe~klkaerE~R~~d~-~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 7 EELERKLKAEREARSLDR-SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHhHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667777778888887 4566667777777777777766554
No 74
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.31 E-value=1.2e+02 Score=22.12 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
+...+.++..++.++..++.++...+.+...|-.
T Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ 52 (85)
T TIGR02209 19 VVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQL 52 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888888888888877777665
No 75
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.17 E-value=3.3e+02 Score=23.55 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 026556 160 CHLQKQVSELQAQLAKAQAELVTMESQQRNLITLIC 195 (237)
Q Consensus 160 ~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~~ 195 (237)
.++|.+++.+|.+|..-|.||..+=.+-|.|+.-+-
T Consensus 37 ~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~ 72 (138)
T COG3105 37 QKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLA 72 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888888888788888887544
No 76
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=28.79 E-value=1.4e+02 Score=22.49 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRNLITL 193 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~ 193 (237)
+..+..++++++.+...++.|-.+++...+.+-..
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 44555666667777777776666666666665554
No 77
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.66 E-value=1.2e+02 Score=22.93 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=13.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 026556 154 GCAGAICHLQKQVSELQAQLAKA 176 (237)
Q Consensus 154 GCvGiI~~Lq~qI~~LqaeLa~a 176 (237)
..+-.|..|+.++..|+.+-..+
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34556666666666666654333
No 78
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=28.51 E-value=1.3e+02 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026556 161 HLQKQVSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 161 ~Lq~qI~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.|+.+++.++.++...++++..+.....
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~ 30 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIA 30 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444333
No 79
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=28.48 E-value=83 Score=23.46 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
.++|+.+|..++.||.+++.|++.
T Consensus 14 ~~eL~~~l~elk~eLf~LR~q~~~ 37 (69)
T PRK14549 14 PEEREEKLEELKLELLKERAQAAM 37 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777777777766553
No 80
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.43 E-value=1.6e+02 Score=25.32 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=8.3
Q ss_pred HHHHHHHHhhccccCCC
Q 026556 136 AVSSMVYEASARIRDPV 152 (237)
Q Consensus 136 Av~SLvYEA~aR~rDPV 152 (237)
++++-+-++--++.||.
T Consensus 9 ~~~a~~~~~ld~~EDP~ 25 (221)
T PF04012_consen 9 LVKANINELLDKAEDPE 25 (221)
T ss_pred HHHHHHHHHHHhhcCHH
Confidence 44444444445555554
No 81
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=28.41 E-value=78 Score=24.95 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 026556 167 SELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 167 ~~LqaeLa~aqaeL~~~q~q~a 188 (237)
++|+.+|..++.||.++++|++
T Consensus 11 eEL~e~L~elkkELf~LR~q~a 32 (87)
T PRK00461 11 EELEKLVIELKAELFTLRFKNA 32 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665544
No 82
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=28.10 E-value=56 Score=24.63 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.4
Q ss_pred hHHHHhhcC--CccchHHHHHHHHHHhh
Q 026556 120 NIIKFLQEL--PESQRADAVSSMVYEAS 145 (237)
Q Consensus 120 NV~KmLq~l--p~~qR~dAv~SLvYEA~ 145 (237)
.|.++|+.+ |.+.|...+..++.||.
T Consensus 24 ~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 24 KIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 788999988 78899999999999995
No 83
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=27.96 E-value=2.1e+02 Score=20.25 Aligned_cols=28 Identities=36% Similarity=0.412 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
+.+|..|+.+|++-|+.+.+.|..+-.|
T Consensus 4 ~s~L~~qL~qL~aNL~~t~~~l~~~s~Q 31 (45)
T PF08227_consen 4 YSHLASQLAQLQANLADTENLLEMTSIQ 31 (45)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5678888888888888887777654444
No 84
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=27.88 E-value=21 Score=28.54 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
.+..|+.+|..++++|+.++.++..++.|...
T Consensus 14 ~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 14 ELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp -----------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46678888888888888888888877776655
No 85
>PRK14161 heat shock protein GrpE; Provisional
Probab=27.51 E-value=99 Score=27.02 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
.|..|+.++.+++..+.++++++.|++-.
T Consensus 27 ei~~l~~e~~elkd~~lR~~AefeN~rkR 55 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEIDNTRKR 55 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999887654
No 86
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=27.41 E-value=1.7e+02 Score=25.33 Aligned_cols=56 Identities=14% Similarity=0.453 Sum_probs=23.0
Q ss_pred hhHHHHhhcCCc--cchHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 119 SNIIKFLQELPE--SQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 119 SNV~KmLq~lp~--~qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
..|...|++=|+ .+.++++..|. +..|- -|+|+-.++|+..|++++..++.+|..+
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l~------~ph~~---~~avSL~erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAELR------LPHPS---GGAVSLVERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHcC------CCCCC---CCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666553 45667776653 44553 3799999999999999999988888764
No 87
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=27.30 E-value=1e+02 Score=26.56 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHhhcccc
Q 026556 132 QRADAVSSMVYEASARIR 149 (237)
Q Consensus 132 qR~dAv~SLvYEA~aR~r 149 (237)
||..+.+-==|-+.+|++
T Consensus 54 QrRRTLKNRGYA~sCR~K 71 (135)
T KOG4196|consen 54 QRRRTLKNRGYAQSCRVK 71 (135)
T ss_pred HHHHHHhhhhHHHHHHHH
Confidence 667777777899999865
No 88
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.08 E-value=95 Score=28.96 Aligned_cols=55 Identities=25% Similarity=0.297 Sum_probs=36.0
Q ss_pred hHHHHhhcCCccchHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 120 NIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 120 NV~KmLq~lp~~qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
+++.+|..-...+..+|-.. +-|+..+.. -.+..|++|+..|.+.|..++.||..
T Consensus 52 ~~i~~le~~~~~~l~~ak~e-Lqe~eek~e-------~~l~~Lq~ql~~l~akI~k~~~el~~ 106 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQAKAE-LQEWEEKEE-------SKLSKLQQQLEQLDAKIQKTQEELNF 106 (258)
T ss_pred HHHHHHHccChHHHHHHHHH-HHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665555444333 344443332 35788999999999999999988764
No 89
>PRK14141 heat shock protein GrpE; Provisional
Probab=26.99 E-value=1e+02 Score=27.82 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQ 187 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~ 187 (237)
.|..|+.++.+++..+.++++++.|++-.-
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RKR~ 68 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRKRT 68 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999998876553
No 90
>PRK10963 hypothetical protein; Provisional
Probab=26.93 E-value=2.6e+02 Score=24.61 Aligned_cols=56 Identities=18% Similarity=0.400 Sum_probs=40.3
Q ss_pred hhHHHHhhcCCc--cchHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 119 SNIIKFLQELPE--SQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 119 SNV~KmLq~lp~--~qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
..|...|++=|. .+.++.+. ..++-.|..| +|+-.++|++.|+.++..++.+|..+
T Consensus 6 ~~V~~yL~~~PdFf~~h~~Ll~------~L~lph~~~g---aVSL~ErQ~~~LR~r~~~Le~~l~~L 63 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRNARLVE------QMRVPHPVRG---TVSLVEWQMARQRNHIHVLEEEMTLL 63 (223)
T ss_pred HHHHHHHHHCchHHhhCHHHHH------hccCCCCCCC---eecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777774 46777776 3467777554 77888888888888888888777653
No 91
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=26.54 E-value=99 Score=22.55 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.++|+.+|..++.||..++.|++
T Consensus 11 ~~eL~~~l~~lkkeL~~lR~~~~ 33 (66)
T PRK00306 11 VEELNEKLLELKKELFNLRFQKA 33 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666667766666653
No 92
>PRK14623 hypothetical protein; Provisional
Probab=26.49 E-value=83 Score=25.52 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
+..|.+|.+++|.++..+|++|......
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~v~ 30 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVLID 30 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 6778889999999999999999886654
No 93
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.38 E-value=2.6e+02 Score=24.92 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 155 CAGAICHLQKQVSELQAQLAKAQAE 179 (237)
Q Consensus 155 CvGiI~~Lq~qI~~LqaeLa~aqae 179 (237)
..-.+-.|++|+.+++++|+.++++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3334555666666666666555444
No 94
>PRK14625 hypothetical protein; Provisional
Probab=26.33 E-value=83 Score=25.64 Aligned_cols=28 Identities=36% Similarity=0.408 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
+..|.+|.+.+|.++..+|+||......
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~v~ 31 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETTVE 31 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 6788899999999999999999986654
No 95
>PRK14626 hypothetical protein; Provisional
Probab=26.26 E-value=94 Score=25.19 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
|-+..+.+|.+++|.++..+|+||......
T Consensus 5 gn~~~mmkqaq~mQ~km~~~qeeL~~~~v~ 34 (110)
T PRK14626 5 GNLAELMKQMQSIKENVEKAKEELKKEEIV 34 (110)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 457788889999999999999999876544
No 96
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.13 E-value=91 Score=31.58 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=22.0
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 150 DPVYGCAGAICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 150 DPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
.|.....--|..|| ||++|+.||+.+++|+..+
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhccc
Confidence 34444444455566 8888888888888887743
No 97
>PRK14127 cell division protein GpsB; Provisional
Probab=25.98 E-value=1.2e+02 Score=24.76 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
-+-.|..++..|+.++..++.+|..++.|.+.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45568899999999999999999999887663
No 98
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.97 E-value=1.4e+02 Score=25.23 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=30.8
Q ss_pred HHHHHHhhc-cccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026556 138 SSMVYEASA-RIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 138 ~SLvYEA~a-R~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
..|.-|.++ -.+| =+.---+|+++++.+++||+..++++...+..-..
T Consensus 50 ~~l~~E~~~iS~qD----eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~ 98 (161)
T PF04420_consen 50 LQLKRELNAISAQD----EFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDK 98 (161)
T ss_dssp HHHHHHHTTS-TTT----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHcCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 3444 45666778888888888888888887765554433
No 99
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=25.75 E-value=28 Score=25.08 Aligned_cols=16 Identities=38% Similarity=0.970 Sum_probs=14.7
Q ss_pred CCChhhHHhhhcCccC
Q 026556 79 SPCAACKILRRRCVEK 94 (237)
Q Consensus 79 s~CAACK~lRRrC~~d 94 (237)
..|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 7899999999999875
No 100
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.62 E-value=1.6e+02 Score=23.21 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026556 161 HLQKQVSELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 161 ~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
.|+.+++.++.++..+++++..++.+..-
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e 31 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAE 31 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444333
No 101
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.44 E-value=93 Score=25.41 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 164 KQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 164 ~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
++...|+.||..+|.||..|+.+-..=++
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~V~~HF~ 53 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQEVNDHFA 53 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999887666444
No 102
>PRK14147 heat shock protein GrpE; Provisional
Probab=25.43 E-value=1.2e+02 Score=26.37 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQ 187 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~ 187 (237)
-|-.|+.++.+++..+.++++++.|++-.-
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~ 55 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKRI 55 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999998989999988876553
No 103
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.25 E-value=2.1e+02 Score=23.56 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
|-|..|++++..|+++-..+.+||+.+-..
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888887777777777777765333
No 104
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=25.07 E-value=72 Score=32.02 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=21.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 153 YGCAGAICHLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 153 yGCvGiI~~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
-||---| .||++|++|++||+.+|.-..
T Consensus 415 qGCpRC~-~LQkEIedLreQLaamqsl~~ 442 (445)
T PF15483_consen 415 QGCPRCL-VLQKEIEDLREQLAAMQSLAD 442 (445)
T ss_pred CCCcccH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 599999999999998886443
No 105
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=24.99 E-value=2e+02 Score=20.72 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
+....+.+|......|..++.+|..++
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555443
No 106
>PRK14622 hypothetical protein; Provisional
Probab=24.96 E-value=99 Score=24.75 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
+..|.+|.+++|.++..+|++|.+....
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~~v~ 30 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEIAVE 30 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 5678899999999999999999886544
No 107
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=24.82 E-value=82 Score=24.02 Aligned_cols=19 Identities=42% Similarity=0.607 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQ 177 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aq 177 (237)
|-.||.+|.+|++||++-.
T Consensus 34 IalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 34 IALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 6678888888888887643
No 108
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=24.76 E-value=1.9e+02 Score=18.26 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026556 162 LQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 162 Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
.|-.+..-|++|+.+|.+++.
T Consensus 3 Yqakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 355666777777777766654
No 109
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=24.71 E-value=1.8e+02 Score=27.38 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
+-...+||..+|.|+-..++.+.|.
T Consensus 53 leqVnnQIqqlQnQaq~yqNmlqNt 77 (252)
T COG5314 53 LEQVNNQIQQLQNQAQQYQNMLQNT 77 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555543
No 110
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.66 E-value=2e+02 Score=22.84 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMES 185 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~ 185 (237)
+..+.+++.+++.+.+++++|...++.
T Consensus 18 ~~y~~~k~~ka~~~~~kL~~en~qlk~ 44 (87)
T PF10883_consen 18 LAYLWWKVKKAKKQNAKLQKENEQLKT 44 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566776776666666666554433
No 111
>PRK11239 hypothetical protein; Provisional
Probab=24.50 E-value=1.2e+02 Score=27.85 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
.+.+..|+.+|..|++|++.+++++..+..|
T Consensus 182 ~~~~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 182 NAVDGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556779999999999999998888876543
No 112
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.21 E-value=1.5e+02 Score=26.20 Aligned_cols=6 Identities=17% Similarity=-0.153 Sum_probs=2.6
Q ss_pred CCccCC
Q 026556 230 SAWEPL 235 (237)
Q Consensus 230 ~~w~~~ 235 (237)
+.|.++
T Consensus 213 ~~~~~~ 218 (262)
T PF14257_consen 213 SFGSRF 218 (262)
T ss_pred CcchHH
Confidence 344443
No 113
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=24.09 E-value=2.1e+02 Score=26.12 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=36.1
Q ss_pred HHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 026556 141 VYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNL 190 (237)
Q Consensus 141 vYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l 190 (237)
+..|..++. =|-| |..|-.|+.+|..++.+|+.++.++...+......
T Consensus 18 i~~as~~lN-d~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~a 65 (207)
T PF05546_consen 18 IFTASQALN-DVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDA 65 (207)
T ss_pred HHHHHHHHH-hccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444 4667 99999999999999999999999887655544443
No 114
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=23.99 E-value=3.7e+02 Score=21.39 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEM 198 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~~~~~ 198 (237)
+..|++++..|+.++.....++..+..+..--.+.+++..
T Consensus 10 ~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~ 49 (171)
T PF03357_consen 10 IRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKR 49 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4556666666666666655555554444444444444433
No 115
>PRK14164 heat shock protein GrpE; Provisional
Probab=23.95 E-value=1.6e+02 Score=26.80 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026556 155 CAGAICHLQKQVSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 155 CvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a 188 (237)
--+.|..|+.++.+++..+.+++++..||+-.-.
T Consensus 75 ~~~~~~~le~el~el~d~llR~~AE~eN~RkR~~ 108 (218)
T PRK14164 75 DDGEASTVEAQLAERTEDLQRVTAEYANYRRRTE 108 (218)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999999999999876643
No 116
>PRK02793 phi X174 lysis protein; Provisional
Probab=23.94 E-value=1.5e+02 Score=22.21 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 026556 162 LQKQVSELQAQLA 174 (237)
Q Consensus 162 Lq~qI~~LqaeLa 174 (237)
++.+|.+|+..|+
T Consensus 6 ~e~Ri~~LE~~la 18 (72)
T PRK02793 6 LEARLAELESRLA 18 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 117
>PRK14155 heat shock protein GrpE; Provisional
Probab=23.84 E-value=1.2e+02 Score=27.13 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
...|..|+.++.+++.++.++++++.|++-.
T Consensus 19 ~~~l~~le~e~~elkd~~lR~~AefeN~RKR 49 (208)
T PRK14155 19 AQEIEALKAEVAALKDQALRYAAEAENTKRR 49 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788889999999999999998887654
No 118
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=23.84 E-value=1.4e+02 Score=24.26 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMES 185 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~ 185 (237)
|..|+.++.+++.++.++++++.+++-
T Consensus 20 l~~l~~~~~~l~~~~~r~~ae~en~~~ 46 (165)
T PF01025_consen 20 LEELEKEIEELKERLLRLQAEFENYRK 46 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777777777777777766543
No 119
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.83 E-value=2.3e+02 Score=22.78 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
+..|+.+++.++.++..++.++..+......+..
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665555444433
No 120
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.58 E-value=1.7e+02 Score=21.50 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 161 HLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 161 ~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
.++++|..|+.+|..++.++...+-+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~ 54 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEAR 54 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777666655433
No 121
>PRK09039 hypothetical protein; Validated
Probab=23.45 E-value=1.7e+02 Score=27.59 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQA 178 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqa 178 (237)
|-.|+.|+..|+++|+.+++
T Consensus 146 I~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 146 IAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 122
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.40 E-value=1.4e+02 Score=23.70 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 165 QVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 165 qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
.+.+++.|++.++.++..++.+.+.|..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555555544
No 123
>PRK14156 heat shock protein GrpE; Provisional
Probab=23.30 E-value=1.5e+02 Score=26.03 Aligned_cols=46 Identities=15% Similarity=0.323 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026556 133 RADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQ 187 (237)
Q Consensus 133 R~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~ 187 (237)
-.+++.-.+-|-... .-|-.|+.++.+++.++.++++++.|++-.-
T Consensus 19 ~~~~~~~~~~~~~~~---------~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~ 64 (177)
T PRK14156 19 TEETVEEVVEETPEK---------SELELANERADEFENKYLRAHAEMQNIQRRA 64 (177)
T ss_pred HHHHHHHHHhhcccH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554332 3478899999999999999999999876543
No 124
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.13 E-value=3.5e+02 Score=21.97 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQ 187 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~ 187 (237)
+..|+..+..|+.+++.++.++...+...
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~ 96 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKE 96 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555443333
No 125
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=23.01 E-value=2.1e+02 Score=22.99 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQQRNL 190 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l 190 (237)
+..+..++.++..+++|++.+.++-..+..+-..|
T Consensus 49 ~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L 83 (117)
T COG2919 49 AADVLQLQRQIAAQQAELEKLSARNTALEAEIKDL 83 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466777788777777777766665554444433
No 126
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.93 E-value=1.6e+02 Score=21.68 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
.+-.|+++|+..+.++..++.++..+
T Consensus 33 RLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 33 RLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999888888765
No 127
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.82 E-value=57 Score=32.98 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026556 163 QKQVSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 163 q~qI~~LqaeLa~aqaeL~~~q~q~a 188 (237)
-.+++.+| ||+.++.||..++.|+.
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 33444444 55555555555555544
No 128
>PRK10698 phage shock protein PspA; Provisional
Probab=22.69 E-value=2.7e+02 Score=24.78 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=19.2
Q ss_pred HHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 136 AVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQA 178 (237)
Q Consensus 136 Av~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqa 178 (237)
++++=+-++--+..||+-.-==+|..++..+..++..++.+.+
T Consensus 10 ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A 52 (222)
T PRK10698 10 IVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALA 52 (222)
T ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455433333444444444444444444333
No 129
>PRK14624 hypothetical protein; Provisional
Probab=22.61 E-value=1.1e+02 Score=25.26 Aligned_cols=30 Identities=0% Similarity=0.210 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
+-+..|.+|.+++|.++..+|++|+.....
T Consensus 6 ~nm~~~mkqAq~mQ~km~~~QeeL~~~~v~ 35 (115)
T PRK14624 6 KNMSEALSNMGNIREKMEEVKKRIASIRVV 35 (115)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 346788889999999999999999886544
No 130
>PRK00587 hypothetical protein; Provisional
Probab=22.55 E-value=1.2e+02 Score=24.25 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a 188 (237)
+..|.+|.+.+|.++..+|++|.+......
T Consensus 3 ~~~lmkqaqkmQ~km~~~QeeL~~~~v~g~ 32 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEKEFDFD 32 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEE
Confidence 467888899999999999999988665433
No 131
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=22.54 E-value=58 Score=26.16 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=28.8
Q ss_pred hhhHHhhhcCc-cCCccCcCCCCCCCcchhHhhhhhchhhHHHHhhc
Q 026556 82 AACKILRRRCV-EKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQE 127 (237)
Q Consensus 82 AACK~lRRrC~-~dCilAPYFP~~~~~~F~~vhKVFG~SNV~KmLq~ 127 (237)
-.+.-+||.++ .-..+.||||..++.+= .-...+.+.-+.+||+.
T Consensus 69 l~i~a~r~~~a~~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~~ 114 (116)
T PF13793_consen 69 LLIDALRRAGAKRITLVIPYLPYARQDRR-KPGEPISAKVVAKLLSA 114 (116)
T ss_dssp HHHHHHHHTTBSEEEEEESS-TTTTSSSS-STTC--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEeccchhhhhhccC-CCCCcchHHHHHHHHHh
Confidence 34455666666 45778999999877654 44666777777777764
No 132
>PRK14162 heat shock protein GrpE; Provisional
Probab=22.53 E-value=1.4e+02 Score=26.60 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026556 154 GCAGAICHLQKQVSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 154 GCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a 188 (237)
..-.-|-.|+.++.+++..+.++++++.||+-...
T Consensus 43 ~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~ 77 (194)
T PRK14162 43 DLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYA 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455788999999999999999999998775543
No 133
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.53 E-value=1e+02 Score=31.41 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
-.|..|+.||..||.|...+|++|+.
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778888888888888888888764
No 134
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.51 E-value=1.4e+02 Score=27.02 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
.|..|+.++.+++..+.++++++.||+--
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR 88 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKR 88 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888876643
No 135
>PRK14140 heat shock protein GrpE; Provisional
Probab=22.42 E-value=1.4e+02 Score=26.51 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
.|..|+.++.+++..+.++++++.|++--
T Consensus 45 ~i~~l~~ei~elkd~~lR~~Ae~eN~rkR 73 (191)
T PRK14140 45 KIAELEAKLDELEERYLRLQADFENYKRR 73 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777778888888776544
No 136
>PRK14153 heat shock protein GrpE; Provisional
Probab=22.37 E-value=1.4e+02 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
-|-.|+.++.+++.++.++++++.|++-.
T Consensus 41 ei~~l~~e~~elkd~~lR~~AEfeN~rKR 69 (194)
T PRK14153 41 ETEKCREEIESLKEQLFRLAAEFDNFRKR 69 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888888876544
No 137
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=22.34 E-value=1.4e+02 Score=18.60 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKA 176 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~a 176 (237)
|..|+..|.+|+.+|..-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888888888888654
No 138
>PRK14151 heat shock protein GrpE; Provisional
Probab=22.34 E-value=1.4e+02 Score=25.94 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a 188 (237)
..|..|+.++.+++..+.++++++.|++-.-.
T Consensus 27 ~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~ 58 (176)
T PRK14151 27 ARVQELEEQLAAAKDQSLRAAADLQNVRRRAE 58 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999988766533
No 139
>PRK15396 murein lipoprotein; Provisional
Probab=22.28 E-value=1.3e+02 Score=23.26 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMES 185 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~ 185 (237)
-|-+|+.+|+.|+++...++.+...++.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777888877777777766665543
No 140
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.26 E-value=2.9e+02 Score=24.18 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 135 DAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAE 179 (237)
Q Consensus 135 dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqae 179 (237)
+++++=+.++--.+.||+-.-==.|..++..|..++..|+.+.+.
T Consensus 9 ~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~ 53 (219)
T TIGR02977 9 DIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIAD 53 (219)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666444444555555555555555554443
No 141
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.24 E-value=3e+02 Score=20.37 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
|-+|-.+|..|..++..+..++..++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443
No 142
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.22 E-value=1.5e+02 Score=22.60 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
|..|+.++..++.++..+++++..
T Consensus 79 l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 79 LEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555543
No 143
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.05 E-value=1.6e+02 Score=25.78 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
+.|..|+.|+.+++..+.++++++.+++-.
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR 72 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKR 72 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999887654
No 144
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.67 E-value=1.8e+02 Score=25.28 Aligned_cols=16 Identities=44% Similarity=0.960 Sum_probs=7.7
Q ss_pred ChhhHHhhhcCc-cCCc
Q 026556 81 CAACKILRRRCV-EKCV 96 (237)
Q Consensus 81 CAACK~lRRrC~-~dCi 96 (237)
|..|-..++++- ..|+
T Consensus 2 C~iC~~~~~~~~C~~C~ 18 (302)
T PF10186_consen 2 CPICHNSRRRFYCANCV 18 (302)
T ss_pred CCCCCCCCCCeECHHHH
Confidence 555655555433 3444
No 145
>PRK02119 hypothetical protein; Provisional
Probab=21.55 E-value=1.8e+02 Score=21.93 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAK 175 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~ 175 (237)
|..++.+|.+|+..|+.
T Consensus 4 ~~~~e~Ri~~LE~rla~ 20 (73)
T PRK02119 4 QQNLENRIAELEMKIAF 20 (73)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 146
>PRK04406 hypothetical protein; Provisional
Probab=21.45 E-value=1.8e+02 Score=22.14 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026556 160 CHLQKQVSELQAQLAK 175 (237)
Q Consensus 160 ~~Lq~qI~~LqaeLa~ 175 (237)
..|+.+|.+|+..|+.
T Consensus 7 ~~le~Ri~~LE~~lAf 22 (75)
T PRK04406 7 EQLEERINDLECQLAF 22 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 147
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.27 E-value=2.1e+02 Score=23.32 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=44.7
Q ss_pred hhhchhhHHHHhhcCCc-cchHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 114 RVFGASNIIKFLQELPE-SQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 114 KVFG~SNV~KmLq~lp~-~qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
.-+...+|++.|.+|-. .+|....+--+-+-..+.+.=+-=--..+..|+.++..++.+++.++++...++.+...+-.
T Consensus 29 ~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777766532 12221111111111122222222234568888888888888888888877777666666555
Q ss_pred HHH
Q 026556 193 LIC 195 (237)
Q Consensus 193 ~~~ 195 (237)
.+-
T Consensus 109 ~~k 111 (151)
T PF11559_consen 109 KLK 111 (151)
T ss_pred HHH
Confidence 443
No 148
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.15 E-value=1.2e+02 Score=28.99 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=62.9
Q ss_pred hhHhhhhhchhhHHHHhhcCCcc---chHHHHHHH----HHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 109 FTIAHRVFGASNIIKFLQELPES---QRADAVSSM----VYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 109 F~~vhKVFG~SNV~KmLq~lp~~---qR~dAv~SL----vYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
+...|+.|-..++.+-|+.|.++ .|.+|-.-- -||-..+.- |..||.-+.....||..|..+|+.=..+..
T Consensus 153 ~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL--v~dcv~QL~~An~qia~LseELa~k~Ee~~ 230 (306)
T PF04849_consen 153 SLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL--VLDCVKQLSEANQQIASLSEELARKTEENR 230 (306)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH--HHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 33466677777777777777654 465554333 677777766 888999999999999999999988888888
Q ss_pred HhhhhhhhhHHHHH
Q 026556 182 TMESQQRNLITLIC 195 (237)
Q Consensus 182 ~~q~q~a~l~~~~~ 195 (237)
..|.+-.+|++=|.
T Consensus 231 rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 231 RQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777777776544
No 149
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=21.07 E-value=1.4e+02 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026556 161 HLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 161 ~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
.|..++.+|+.||..++.+++
T Consensus 15 eL~~~l~eLK~ELf~LR~q~a 35 (69)
T COG0255 15 ELEEELRELKKELFNLRFQLA 35 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444443
No 150
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.04 E-value=2.6e+02 Score=25.77 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026556 161 HLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 161 ~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
.|+++.++|+.|++.+++++.
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665544443
No 151
>PRK14139 heat shock protein GrpE; Provisional
Probab=21.01 E-value=1.5e+02 Score=26.23 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 151 PVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 151 PVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
.+...-.-|..|+.++.+++..+.++++++.|++--
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR 68 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRRR 68 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334457778888888888888888888876543
No 152
>PRK14157 heat shock protein GrpE; Provisional
Probab=20.95 E-value=1.5e+02 Score=27.18 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 155 CAGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 155 CvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
--..|-.|+.++.+++.+|.+++++..||+-.
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR 113 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNR 113 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999887644
No 153
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.77 E-value=1.2e+02 Score=23.37 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=41.0
Q ss_pred HHHHHhhccccCCCcccHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 139 SMVYEASARIRDPVYGCAG-----------AICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 139 SLvYEA~aR~rDPVyGCvG-----------iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
++++.|.....|.|+=-+| .+-.|++++..++.++...+.++..++.+...+..
T Consensus 58 ~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 58 GLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred ceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677777777 78899999999999999888888888777766654
No 154
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.64 E-value=3.2e+02 Score=21.41 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITL 193 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~ 193 (237)
-.+..|+.++..++.++..++..|...+-|...+.+.
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588889999999998888888888888777766553
No 155
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=20.43 E-value=2.7e+02 Score=20.16 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
|.+...+.++.+....|..++.+|..++
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777654
No 156
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.39 E-value=1.4e+02 Score=27.88 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQ 187 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~ 187 (237)
.|-.|++||..++.+++.++- +..++.|.
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~ 85 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQYQN 85 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHHHHH
Confidence 477888888888888888885 44444444
No 157
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.20 E-value=5.3e+02 Score=22.82 Aligned_cols=12 Identities=33% Similarity=0.554 Sum_probs=4.4
Q ss_pred HHHHHHHHhhhh
Q 026556 175 KAQAELVTMESQ 186 (237)
Q Consensus 175 ~aqaeL~~~q~q 186 (237)
..+.+++.++.|
T Consensus 81 ~q~~el~~L~~q 92 (251)
T PF11932_consen 81 SQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 158
>PRK04325 hypothetical protein; Provisional
Probab=20.14 E-value=2.1e+02 Score=21.49 Aligned_cols=12 Identities=42% Similarity=0.720 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 026556 163 QKQVSELQAQLA 174 (237)
Q Consensus 163 q~qI~~LqaeLa 174 (237)
+.+|.+|+..|+
T Consensus 8 e~Ri~~LE~klA 19 (74)
T PRK04325 8 EDRITELEIQLA 19 (74)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 159
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.10 E-value=2.5e+02 Score=24.82 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLI 194 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~ 194 (237)
.+.+|+.++...+.+++.++.++..+..-...+..++
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m 107 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666655555555544
Done!