Query 026556
Match_columns 237
No_of_seqs 138 out of 311
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:24:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 80.0 2.6 8.9E-05 27.0 4.0 28 157-184 2-29 (33)
2 2er8_A Regulatory protein Leu3 76.1 3.5 0.00012 28.3 4.2 21 157-177 49-69 (72)
3 1nkp_B MAX protein, MYC proto- 69.4 7.5 0.00026 28.1 4.8 33 156-188 46-78 (83)
4 2wt7_A Proto-oncogene protein 64.0 17 0.00057 25.4 5.6 37 158-194 24-60 (63)
5 2ke4_A CDC42-interacting prote 59.0 28 0.00095 26.7 6.5 40 141-181 47-86 (98)
6 2xdj_A Uncharacterized protein 57.2 21 0.00073 26.7 5.4 27 158-184 21-47 (83)
7 1am9_A Srebp-1A, protein (ster 56.3 17 0.00058 26.5 4.7 27 156-182 49-75 (82)
8 4e61_A Protein BIM1; EB1-like 54.4 23 0.00077 28.0 5.4 36 154-189 1-36 (106)
9 3ra3_B P2F; coiled coil domain 54.3 13 0.00044 23.0 3.1 25 159-183 2-26 (28)
10 1t2k_D Cyclic-AMP-dependent tr 53.9 38 0.0013 23.2 5.9 36 158-193 23-58 (61)
11 1zme_C Proline utilization tra 53.7 13 0.00044 25.0 3.5 26 156-181 43-68 (70)
12 4gkw_A Spindle assembly abnorm 53.3 57 0.002 27.3 7.9 39 135-184 35-73 (167)
13 1gk6_A Vimentin; intermediate 50.8 31 0.0011 23.9 5.1 33 160-192 3-35 (59)
14 1uuj_A Platelet-activating fac 50.5 6.5 0.00022 30.1 1.6 24 159-182 60-83 (88)
15 1x8y_A Lamin A/C; structural p 47.7 37 0.0013 25.0 5.4 35 158-192 29-63 (86)
16 1gk4_A Vimentin; intermediate 47.6 38 0.0013 24.7 5.4 35 158-192 27-61 (84)
17 2xv5_A Lamin-A/C; structural p 46.8 41 0.0014 24.6 5.4 36 158-193 6-41 (74)
18 1jnm_A Proto-oncogene C-JUN; B 46.4 34 0.0012 23.5 4.7 37 157-193 22-58 (62)
19 3nmd_A CGMP dependent protein 45.2 29 0.00099 25.7 4.4 22 159-180 42-63 (72)
20 2l5g_B Putative uncharacterize 45.1 48 0.0016 22.4 5.1 32 161-192 6-37 (42)
21 2zvf_A Alanyl-tRNA synthetase; 43.8 67 0.0023 25.1 6.7 46 139-184 14-59 (171)
22 3uul_A Utrophin; spectrin repe 43.2 78 0.0027 22.3 6.5 51 141-191 18-70 (118)
23 1hlo_A Protein (transcription 42.8 22 0.00077 25.5 3.4 24 156-179 56-79 (80)
24 1nlw_A MAD protein, MAX dimeri 42.5 41 0.0014 24.5 4.9 31 156-186 46-76 (80)
25 2dgc_A Protein (GCN4); basic d 42.1 42 0.0014 23.6 4.7 30 157-186 30-59 (63)
26 3uun_A Dystrophin; triple heli 40.8 68 0.0023 22.5 5.8 45 148-192 27-71 (119)
27 2xdj_A Uncharacterized protein 39.9 62 0.0021 24.1 5.6 34 157-190 27-60 (83)
28 1rtm_1 Mannose-binding protein 39.4 30 0.001 26.0 3.8 22 162-183 2-23 (149)
29 3tnu_B Keratin, type II cytosk 39.3 54 0.0018 25.4 5.4 24 159-182 77-100 (129)
30 1r73_A TM1492, 50S ribosomal p 38.8 30 0.001 24.6 3.5 22 167-188 12-33 (66)
31 3tnu_A Keratin, type I cytoske 38.8 55 0.0019 25.5 5.4 25 159-183 79-103 (131)
32 3mov_A Lamin-B1; LMNB1, B-type 38.5 60 0.0021 24.5 5.4 35 158-192 38-72 (95)
33 1ci6_A Transcription factor AT 37.9 79 0.0027 22.0 5.6 36 159-194 25-60 (63)
34 3j21_W 50S ribosomal protein L 37.8 31 0.001 25.0 3.5 23 166-188 11-33 (72)
35 2yy0_A C-MYC-binding protein; 37.6 32 0.0011 23.6 3.4 25 159-183 21-45 (53)
36 1dh3_A Transcription factor CR 37.3 54 0.0018 22.4 4.5 28 158-185 23-50 (55)
37 3v2d_2 50S ribosomal protein L 36.7 33 0.0011 24.9 3.5 23 166-188 18-40 (72)
38 3t97_C Nuclear pore glycoprote 36.6 79 0.0027 22.6 5.5 38 158-195 13-50 (64)
39 4dzn_A Coiled-coil peptide CC- 36.5 51 0.0017 21.0 3.9 25 165-189 3-27 (33)
40 3r4h_A Coiled coil helix CC-TE 36.4 52 0.0018 21.1 3.9 27 157-183 2-28 (34)
41 1vq8_V 50S ribosomal protein L 36.2 34 0.0012 24.7 3.5 23 167-189 15-37 (71)
42 3r8s_Y 50S ribosomal protein L 35.4 29 0.00099 24.4 3.0 23 166-188 11-33 (63)
43 2w6a_A ARF GTPase-activating p 35.2 70 0.0024 23.3 4.9 33 158-190 28-60 (63)
44 2yy0_A C-MYC-binding protein; 34.9 63 0.0022 22.1 4.6 23 159-181 28-50 (53)
45 2ljk_A Protein C17ORF37; MIEN1 34.7 24 0.00082 27.9 2.7 20 70-89 21-40 (117)
46 2z5i_A TM, general control pro 34.6 69 0.0023 21.9 4.7 27 158-184 13-39 (52)
47 3ol1_A Vimentin; structural ge 32.9 76 0.0026 24.5 5.3 31 157-187 20-50 (119)
48 3twe_A Alpha4H; unknown functi 32.7 53 0.0018 20.1 3.4 21 160-180 4-24 (27)
49 3ni0_A Bone marrow stromal ant 32.7 1.8E+02 0.0061 22.8 7.3 48 155-202 16-63 (99)
50 3pbf_A Pulmonary surfactant-as 32.2 33 0.0011 25.5 3.0 24 158-181 3-26 (148)
51 3mq9_A Bone marrow stromal ant 32.0 1.3E+02 0.0045 26.9 7.4 22 158-179 398-419 (471)
52 3myf_A Sensor protein; HPT, hi 32.0 97 0.0033 23.4 5.7 57 110-174 54-110 (119)
53 2zjr_V 50S ribosomal protein L 31.9 35 0.0012 24.2 3.0 22 167-188 12-33 (67)
54 3e98_A GAF domain of unknown f 30.6 60 0.0021 28.0 4.8 56 119-183 34-91 (252)
55 3tnu_B Keratin, type II cytosk 30.5 1.5E+02 0.0051 22.8 6.7 31 153-183 32-62 (129)
56 4emc_A Monopolin complex subun 29.7 2.3E+02 0.0077 24.4 8.1 28 159-186 22-49 (190)
57 2wg5_A General control protein 29.7 57 0.0019 24.9 4.0 28 159-186 9-36 (109)
58 1gd2_E Transcription factor PA 29.7 1.1E+02 0.0037 22.1 5.3 33 157-189 29-61 (70)
59 1zxa_A CGMP-dependent protein 29.1 70 0.0024 23.3 4.2 29 164-192 25-53 (67)
60 1ic2_A Tropomyosin alpha chain 28.6 76 0.0026 22.8 4.4 48 132-183 20-67 (81)
61 1a93_B MAX protein, coiled coi 27.8 84 0.0029 20.3 3.9 23 159-181 9-31 (34)
62 1nkp_A C-MYC, MYC proto-oncoge 27.6 1.2E+02 0.004 22.4 5.3 30 156-185 51-80 (88)
63 1buu_A Protein (mannose-bindin 27.1 48 0.0016 25.6 3.2 21 158-178 24-44 (168)
64 2jee_A YIIU; FTSZ, septum, coi 26.8 2E+02 0.0069 21.5 6.7 23 158-180 21-43 (81)
65 3azd_A Short alpha-tropomyosin 26.4 29 0.00098 22.3 1.5 27 158-184 5-31 (37)
66 2ic6_A Nucleocapsid protein; h 26.4 74 0.0025 23.9 4.0 23 157-179 52-74 (78)
67 4ani_A Protein GRPE; chaperone 26.3 69 0.0023 27.6 4.4 30 157-186 66-95 (213)
68 1ybx_A Conserved hypothetical 26.1 42 0.0014 27.4 2.8 30 157-186 41-70 (143)
69 1t2k_D Cyclic-AMP-dependent tr 25.9 1.3E+02 0.0043 20.5 4.9 28 157-184 29-56 (61)
70 3edu_A Beta-I spectrin, spectr 25.8 62 0.0021 25.8 3.8 52 141-192 124-175 (218)
71 2k48_A Nucleoprotein; viral pr 25.8 71 0.0024 25.4 4.0 22 157-178 82-103 (107)
72 2lw1_A ABC transporter ATP-bin 25.6 98 0.0033 22.5 4.5 24 161-184 19-42 (89)
73 3i00_A HIP-I, huntingtin-inter 25.6 1.2E+02 0.0042 23.8 5.4 35 158-192 41-75 (120)
74 2qdq_A Talin-1; dimerisation d 25.4 1.4E+02 0.0046 20.8 4.9 26 162-187 13-38 (50)
75 3mud_A DNA repair protein XRCC 25.3 1.4E+02 0.0049 25.2 6.1 45 130-185 119-163 (175)
76 3f31_A Spectrin alpha chain, b 25.2 1.1E+02 0.0036 23.5 4.9 55 138-192 59-113 (149)
77 2k48_A Nucleoprotein; viral pr 25.2 1.1E+02 0.0039 24.2 5.0 31 156-186 34-64 (107)
78 1fxk_C Protein (prefoldin); ar 25.1 1.4E+02 0.0049 22.5 5.6 34 159-192 3-36 (133)
79 3w03_C DNA repair protein XRCC 24.9 95 0.0032 26.4 4.9 32 157-188 145-176 (184)
80 3kqg_A Langerin, C-type lectin 24.9 1.1E+02 0.0036 23.5 4.8 25 157-181 16-40 (182)
81 2zkr_v 60S ribosomal protein L 24.8 61 0.0021 25.9 3.5 22 167-188 15-36 (123)
82 3rrk_A V-type ATPase 116 kDa s 24.5 2E+02 0.0069 24.8 7.1 33 157-189 226-258 (357)
83 3m91_A Proteasome-associated A 24.3 1.5E+02 0.0051 20.4 4.9 30 159-188 18-47 (51)
84 3tnu_A Keratin, type I cytoske 24.2 1.6E+02 0.0053 22.8 5.7 20 159-178 40-59 (131)
85 3iz5_c 60S ribosomal protein L 24.0 64 0.0022 25.9 3.5 23 166-188 16-38 (124)
86 3edv_A Spectrin beta chain, br 23.8 2.9E+02 0.0098 22.8 7.7 51 142-192 130-180 (323)
87 4a17_U RPL35, 60S ribosomal pr 23.7 66 0.0023 25.8 3.5 23 166-188 15-37 (124)
88 3u5e_h 60S ribosomal protein L 23.2 67 0.0023 25.6 3.4 23 166-188 14-36 (120)
89 1wlx_A Alpha-actinin 4; three- 22.9 2.9E+02 0.01 22.0 7.6 53 131-183 18-71 (129)
90 3u1c_A Tropomyosin alpha-1 cha 22.9 1.1E+02 0.0036 23.1 4.4 28 156-183 43-70 (101)
91 3kin_B Kinesin heavy chain; mo 22.6 2.4E+02 0.0081 21.7 6.4 71 116-186 24-111 (117)
92 2ic9_A Nucleocapsid protein; h 22.3 93 0.0032 24.2 4.0 23 157-179 52-74 (96)
93 3l4f_A RHO guanine nucleotide 22.2 2.2E+02 0.0076 20.4 6.2 40 156-195 6-45 (61)
94 2pbi_A Regulator of G-protein 22.2 76 0.0026 29.7 4.1 68 107-174 144-236 (424)
95 3dzy_D Peroxisome proliferator 22.1 55 0.0019 29.9 3.1 26 72-97 61-96 (419)
96 2wt7_B Transcription factor MA 21.8 1.5E+02 0.0052 22.5 5.0 57 121-182 11-73 (90)
97 3swk_A Vimentin; cytoskeleton, 21.7 1.1E+02 0.0038 22.5 4.2 28 159-186 2-29 (86)
98 3s4r_A Vimentin; alpha-helix, 21.6 1.7E+02 0.0059 21.8 5.3 24 159-182 58-81 (93)
99 2wt7_B Transcription factor MA 21.1 2E+02 0.0069 21.8 5.6 28 158-185 56-83 (90)
100 3jyw_X 60S ribosomal protein L 21.1 45 0.0016 25.2 1.9 23 166-188 13-35 (86)
101 2zxx_A Geminin; coiled-coil, c 20.7 1.5E+02 0.0052 22.2 4.7 23 159-181 36-58 (79)
102 1jcd_A Major outer membrane li 20.5 1.5E+02 0.0051 20.4 4.4 20 160-179 14-33 (52)
103 3lbx_A Spectrin alpha chain, e 20.3 1.1E+02 0.0039 23.8 4.2 54 138-191 69-122 (161)
104 3q0x_A Centriole protein; cent 20.3 1.6E+02 0.0056 25.6 5.6 24 162-185 183-206 (228)
105 1hjb_A Ccaat/enhancer binding 20.1 1.9E+02 0.0065 21.6 5.2 33 161-193 40-72 (87)
106 3viq_B Mating-type switching p 20.0 1.3E+02 0.0045 22.8 4.3 22 159-180 10-31 (85)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=79.97 E-value=2.6 Score=26.98 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
|.|-.|+++|..|+.|++.++-|++.++
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999998888887654
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=76.09 E-value=3.5 Score=28.29 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026556 157 GAICHLQKQVSELQAQLAKAQ 177 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aq 177 (237)
+.|..|+.+|..|+..|..++
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 667778888888887776544
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.44 E-value=7.5 Score=28.07 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a 188 (237)
+-.|..|+.++..++.++..++.+...++.+-.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999888888877765543
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=63.96 E-value=17 Score=25.36 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLI 194 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~ 194 (237)
.|..|+.++..|+.+-..++.++..++.+-..|-.++
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888888877777766654
No 5
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=59.04 E-value=28 Score=26.68 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=19.8
Q ss_pred HHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 141 VYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 141 vYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
+|+.+-=.-||-.= -+.|..+-..|+.|+++|.+.+.-|+
T Consensus 47 vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 47 VYEKTPQMGDPASL-EPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp HHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67766555555432 44444444444444444444444333
No 6
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=57.16 E-value=21 Score=26.66 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
.+..|++||+.++.|++.++.++...+
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~ 47 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456777777777777777776665543
No 7
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=56.32 E-value=17 Score=26.45 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
+-.|..|+.++..|+.++..++.++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999998888888888777654
No 8
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=54.45 E-value=23 Score=28.00 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026556 154 GCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 154 GCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
|..|-+..|+.++...+++++.++.++..++.+...
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~ 36 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYKGTVST 36 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888899999999999998888888776665443
No 9
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=54.34 E-value=13 Score=23.04 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
|..|+++..+|+.|++.+.-|++.+
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888888888888888777764
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.88 E-value=38 Score=23.20 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLITL 193 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~ 193 (237)
.|..|+.++..|..+...++.++..++.+-..|-.+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777776666555443
No 11
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=53.71 E-value=13 Score=25.04 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
-+.|..|+.+|..|+.+|+.++..|.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999999988877654
No 12
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=53.29 E-value=57 Score=27.28 Aligned_cols=39 Identities=33% Similarity=0.422 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 135 DAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 135 dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
++|--|+-|-. |-|-+||..-...|.||.++++|+..+|
T Consensus 35 ~iVgkML~EEq-----------gKVDQlqKRn~~HQKEi~~Lrae~~~~Q 73 (167)
T 4gkw_A 35 EIVGNMLREEQ-----------GKVDQLQKRNVAHQKEIGKLRAELGTAQ 73 (167)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------hhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 66777777654 6788999998888999999988887654
No 13
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=50.76 E-value=31 Score=23.89 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 160 CHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 160 ~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
..+|..|..++++|..+++++.........|+.
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~Lln 35 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLN 35 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888765444444444
No 14
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=50.53 E-value=6.5 Score=30.10 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
|-.||++|.+|+++++.++.||..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999988864
No 15
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.72 E-value=37 Score=24.98 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
.+..++.+|..++++|+.+++++...-.....|+.
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888887765444444444
No 16
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=47.62 E-value=38 Score=24.72 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
.+..++..|..++++|..++.++.........|+.
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777778888888888777665444444444
No 17
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=46.85 E-value=41 Score=24.60 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLITL 193 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~ 193 (237)
....++.+|..++++|..+++++.........|+.+
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Llni 41 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDI 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888887654444444443
No 18
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=46.42 E-value=34 Score=23.54 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITL 193 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~ 193 (237)
..|..|+.++..|+.+-..++.++..++.+-+.|-.+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888777777777776666555443
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.19 E-value=29 Score=25.73 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAEL 180 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL 180 (237)
|..|+.+|.+..+++..+|.+|
T Consensus 42 I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 20
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.05 E-value=48 Score=22.42 Aligned_cols=32 Identities=9% Similarity=0.313 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 161 HLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 161 ~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
.|-++|..+-.|+++++.+|..+|-.+..|-+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888889999999988888777666544
No 21
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=43.84 E-value=67 Score=25.09 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=31.8
Q ss_pred HHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 139 SMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 139 SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
.++.+......-+..--...|..|+.++.+++.++..++.+++..+
T Consensus 14 ~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 14 RLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445444456677788888888888888888888877654
No 22
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=43.25 E-value=78 Score=22.33 Aligned_cols=51 Identities=10% Similarity=0.090 Sum_probs=39.9
Q ss_pred HHHhhcc--ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 026556 141 VYEASAR--IRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLI 191 (237)
Q Consensus 141 vYEA~aR--~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~ 191 (237)
+-|++.+ ..+||++-...|..+..+...++.+|..-+..+..+......|+
T Consensus 18 L~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~ 70 (118)
T 3uul_A 18 LLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLM 70 (118)
T ss_dssp HHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 45899999999999999999999999998888877766655554
No 23
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.77 E-value=22 Score=25.46 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAE 179 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqae 179 (237)
+-.|..|+.++..|+.++..++.|
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556778888887777777666543
No 24
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=42.51 E-value=41 Score=24.54 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
+..|..|+.+...++.++..++.+...++.+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888877777777777666555443
No 25
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=42.09 E-value=42 Score=23.60 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
..|..|+.++..|+.+...++.++..++.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888887777777766543
No 26
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=40.78 E-value=68 Score=22.54 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=37.5
Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 148 IRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 148 ~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
..+||.+-+..|..+..+...++.+|..-+..+..+......|+.
T Consensus 27 ~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~ 71 (119)
T 3uun_A 27 AQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71 (119)
T ss_dssp HHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999988888877666666554
No 27
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=39.91 E-value=62 Score=24.08 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQRNL 190 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l 190 (237)
.-|..|+.+|..|+.++.....+|..++.++..+
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666655555543
No 28
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=39.42 E-value=30 Score=25.99 Aligned_cols=22 Identities=9% Similarity=0.336 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026556 162 LQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 162 Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
|+++|..|+.++..++.+|..+
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l 23 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELT 23 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 29
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.30 E-value=54 Score=25.39 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
+..++..|..|+++|..++.++..
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444444555555555544443
No 30
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=38.81 E-value=30 Score=24.59 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 026556 167 SELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 167 ~~LqaeLa~aqaeL~~~q~q~a 188 (237)
++|+.+|..++.||.++++|++
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~a 33 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRFQLA 33 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777765
No 31
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.80 E-value=55 Score=25.46 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
+..++..|..|+++|..++.++...
T Consensus 79 l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 79 LAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 32
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.47 E-value=60 Score=24.55 Aligned_cols=35 Identities=6% Similarity=0.171 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
.+..++..|..++++|..++++++........|+.
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 72 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLD 72 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777664333334444
No 33
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.90 E-value=79 Score=21.99 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLI 194 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~ 194 (237)
+..|+.++..|+.+-..++.++..++..-..|-.||
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777766666666666666555555543
No 34
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.85 E-value=31 Score=25.01 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.++|+.+|..++.||.++++|++
T Consensus 11 ~~EL~~~L~elk~ELf~LR~q~a 33 (72)
T 3j21_W 11 IEEIDAKIRELRLQLAKERGLLT 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777765
No 35
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.56 E-value=32 Score=23.62 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
+-.|+.++.+|++++..++.++..+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556656655555555555443
No 36
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=37.28 E-value=54 Score=22.43 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMES 185 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~ 185 (237)
.|..|+.++..|+.|...++.++..++.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888777777777766543
No 37
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=36.71 E-value=33 Score=24.85 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.++|+.+|..++.||.++++|++
T Consensus 18 ~eEL~~~L~elk~ELf~LR~q~a 40 (72)
T 3v2d_2 18 PVELEKLVREKKRELMELRFQAS 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888765
No 38
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=36.58 E-value=79 Score=22.59 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLIC 195 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~~ 195 (237)
.|..|...+..++.+=.++..+|..+..||.-|-.++-
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~ 50 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLS 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888899999999988887663
No 39
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.53 E-value=51 Score=20.98 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh
Q 026556 165 QVSELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 165 qI~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
+|..|+.|++.++.|++.++...+-
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888877665443
No 40
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=36.37 E-value=52 Score=21.08 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
|.+-.+++++..++.||+..+-||+.+
T Consensus 2 gelaaikqelaaikkelaaikfelaai 28 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAI 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777777666666654
No 41
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=36.18 E-value=34 Score=24.66 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 026556 167 SELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 167 ~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
++|+.+|..++.||.++++|++-
T Consensus 15 ~EL~~~l~elk~ELf~LR~q~at 37 (71)
T 1vq8_V 15 AEREAELDDLKTELLNARAVQAA 37 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777788888888888887763
No 42
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=35.45 E-value=29 Score=24.42 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.++|+.+|..++.||.++++|++
T Consensus 11 ~~EL~~~l~elk~Elf~LR~q~a 33 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRMQAA 33 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777778888877765
No 43
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=35.16 E-value=70 Score=23.26 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNL 190 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l 190 (237)
.|.+|.+--+.+..||...|.+|..+|.-..+|
T Consensus 28 kiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 28 KVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 366777777777777777777777665554443
No 44
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.87 E-value=63 Score=22.15 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
+..|+.++..|++++..++++|.
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555554
No 45
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=34.74 E-value=24 Score=27.93 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=15.9
Q ss_pred CCCCCCcccCCChhhHHhhh
Q 026556 70 PLSPPPIVLSPCAACKILRR 89 (237)
Q Consensus 70 ~~~~~~~~~s~CAACK~lRR 89 (237)
+...+.+.+.-|..|+++-|
T Consensus 21 ~~~~vrV~IeYC~~C~~~~r 40 (117)
T 2ljk_A 21 PGSGVRIVVEYCEPCGFEAT 40 (117)
T ss_dssp TTCSCCCEEEECTTTTCHHH
T ss_pred CCCCCeEEEEECCCCCCHHH
Confidence 34556788999999999876
No 46
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=34.60 E-value=69 Score=21.87 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
.|.+||..|.+|+.+|...+.+...++
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~ 39 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 477889999999888887776666543
No 47
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=32.89 E-value=76 Score=24.54 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQ 187 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~ 187 (237)
+.|..|++||..+..+-+.+..+|.+++..-
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888777777777765543
No 48
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.74 E-value=53 Score=20.13 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026556 160 CHLQKQVSELQAQLAKAQAEL 180 (237)
Q Consensus 160 ~~Lq~qI~~LqaeLa~aqaeL 180 (237)
-.|..++++||..|.+++.+|
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888887765
No 49
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=32.67 E-value=1.8e+02 Score=22.78 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhH
Q 026556 155 CAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEMAQSQ 202 (237)
Q Consensus 155 CvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~~~~~~~~~ 202 (237)
|-.+-..|+.||-+.+.-|..++++.+....=--+|.+.+-.+..+.+
T Consensus 16 CrNvT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q 63 (99)
T 3ni0_A 16 CRNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQAL 63 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 556778889998888888888887777655555677777766666654
No 50
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=32.23 E-value=33 Score=25.46 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
++..|+++|..|+.+|..++..|.
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999988888773
No 51
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.00 E-value=1.3e+02 Score=26.87 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAE 179 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqae 179 (237)
+...||+||.++|.-+..++++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHH
Confidence 4445555555555555444433
No 52
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=31.98 E-value=97 Score=23.42 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=32.3
Q ss_pred hHhhhhhchhhHHHHhhcCCccchHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHH
Q 026556 110 TIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLA 174 (237)
Q Consensus 110 ~~vhKVFG~SNV~KmLq~lp~~qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa 174 (237)
..+||+-|++..+.. |. -..-+...|..+|..+|+-..-..+..|..+|..+..++.
T Consensus 54 ~~aHkLkGaa~~~Ga----~~----L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~ 110 (119)
T 3myf_A 54 STIHKLHGASCYCGV----PT----TQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVK 110 (119)
T ss_dssp HHHHHHHHHHTTTTC----HH----HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCH----HH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888887765432 10 1112234566677777776666666666666655554444
No 53
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=31.89 E-value=35 Score=24.24 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 026556 167 SELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 167 ~~LqaeLa~aqaeL~~~q~q~a 188 (237)
++|+.+|..++.||.++++|++
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~a 33 (67)
T 2zjr_V 12 TDFAKEIDARKKELMELRFQAA 33 (67)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777665
No 54
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=30.64 E-value=60 Score=27.96 Aligned_cols=56 Identities=20% Similarity=0.410 Sum_probs=20.9
Q ss_pred hhHHHHhhcCCc--cchHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 119 SNIIKFLQELPE--SQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 119 SNV~KmLq~lp~--~qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
..|...|++=|. .++++++..| ++-.|. | |+|+-.++|++.|++++..++.+|..+
T Consensus 34 ~~V~~yL~~~PdFf~~~~~Ll~~L------~lph~~-~--~aVSL~erQ~~~LR~r~~~Le~~L~~L 91 (252)
T 3e98_A 34 EQVAAYLSQHPEFFVEHDELIPEL------RIPHQP-G--DAVSLVERQVRLLRERNIEMRHRLSQL 91 (252)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhhCHHHHHhC------CCCCCC-C--CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666663 3566666554 566676 3 778888899999988888888888654
No 55
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.55 E-value=1.5e+02 Score=22.82 Aligned_cols=31 Identities=10% Similarity=0.296 Sum_probs=17.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 153 YGCAGAICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 153 yGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
-.+---|..|.++|+.|+.+|..++.....+
T Consensus 32 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 32 RNTKHEISEMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344456667777777777666555544433
No 56
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.73 E-value=2.3e+02 Score=24.43 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
|..|+.++..|..+|.....|+..++.|
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~q 49 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQ 49 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333
No 57
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=29.69 E-value=57 Score=24.89 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
+.+|+.++..++.++..++.||..++..
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4678889999999999999999887654
No 58
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.68 E-value=1.1e+02 Score=22.14 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
..|..|+.+|..|+.....+.+|...++.+-..
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777776666666655555544433
No 59
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.13 E-value=70 Score=23.26 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 164 KQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 164 ~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
..|.+|+.+|....++|..++.|..-+-+
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444333
No 60
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.62 E-value=76 Score=22.81 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 132 QRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 132 qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
.|.+.+..-+-+++.|.. -.-.-|..|+++|..++.+|..++..|...
T Consensus 20 ~~~~~~e~~l~~~e~~~~----~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSK----QLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554431 223557778888888888888877777543
No 61
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.79 E-value=84 Score=20.34 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
+...|+.|++|+.|-+.++.++-
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 45566777777777666666653
No 62
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.56 E-value=1.2e+02 Score=22.37 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMES 185 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~ 185 (237)
+-.|..|+.+...++.++..++.+-..++.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777766655555444433
No 63
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=27.13 E-value=48 Score=25.65 Aligned_cols=21 Identities=10% Similarity=0.393 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQA 178 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqa 178 (237)
.|..|+.+|..|+.+|..++.
T Consensus 24 ~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 24 KLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 355555555555555555443
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.80 E-value=2e+02 Score=21.54 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAEL 180 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL 180 (237)
.|..||.+|..|+.+...+..+.
T Consensus 21 tI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333
No 65
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=26.38 E-value=29 Score=22.34 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
.|..|+.+|..|+.++..++.++...+
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888877777776543
No 66
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=26.37 E-value=74 Score=23.91 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026556 157 GAICHLQKQVSELQAQLAKAQAE 179 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqae 179 (237)
++|..||.+|.+|+.+|+.+.++
T Consensus 52 ~~V~~lq~Ki~elkrqlAd~va~ 74 (78)
T 2ic6_A 52 AAVSALETKLGELKRELADLIAA 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
No 67
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=26.35 E-value=69 Score=27.63 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
..|-.|+.++..++.++.++++++.|++-.
T Consensus 66 ~~l~~l~~e~~el~d~~lR~~AEfeN~RkR 95 (213)
T 4ani_A 66 AQIAELEAKLSEMEHRYLRLYADFENFRRR 95 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888887654
No 68
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=26.14 E-value=42 Score=27.43 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
|-+..|.+|.+++|+++.++|+||+....-
T Consensus 41 gnm~~mmkQAQkmQ~km~k~QeeL~~~eve 70 (143)
T 1ybx_A 41 GNINNLVKQAQKMQRDMERVQEELKEKTVE 70 (143)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHCEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCEEE
Confidence 458889999999999999999999986544
No 69
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.91 E-value=1.3e+02 Score=20.48 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
+-+..|..+...|+.++..++.|+..++
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665554
No 70
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=25.82 E-value=62 Score=25.78 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=29.1
Q ss_pred HHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 141 VYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 141 vYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
+-|...-+.+|+.+-...|..|+++...++.+|+..+.++..++.....|..
T Consensus 124 l~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L~~ 175 (218)
T 3edu_A 124 IDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQT 175 (218)
T ss_dssp HHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555568888788899999999999999999999888877665555544
No 71
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.78 E-value=71 Score=25.35 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026556 157 GAICHLQKQVSELQAQLAKAQA 178 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqa 178 (237)
++|..||.+|.+|+.+|+.+.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766554
No 72
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.60 E-value=98 Score=22.49 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 026556 161 HLQKQVSELQAQLAKAQAELVTME 184 (237)
Q Consensus 161 ~Lq~qI~~LqaeLa~aqaeL~~~q 184 (237)
++|+++..|..+|+.+.+++..++
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444444443
No 73
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.56 E-value=1.2e+02 Score=23.83 Aligned_cols=35 Identities=29% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
+|..|+.+|..|++||+..+.+.......-..|..
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~ 75 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRA 75 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 74
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=25.44 E-value=1.4e+02 Score=20.83 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026556 162 LQKQVSELQAQLAKAQAELVTMESQQ 187 (237)
Q Consensus 162 Lq~qI~~LqaeLa~aqaeL~~~q~q~ 187 (237)
-|..|-..+.||..|+..|+.++.++
T Consensus 13 Aqe~iLr~ErELEeAr~~La~iR~~k 38 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLAQIRQQQ 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888888776554
No 75
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=25.33 E-value=1.4e+02 Score=25.21 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=35.4
Q ss_pred ccchHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026556 130 ESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMES 185 (237)
Q Consensus 130 ~~qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~ 185 (237)
.+.|.++++-|+-.| ...|..||.+|+.|+.+|...+.+-..++.
T Consensus 119 a~~paE~ireli~~A-----------ertV~kLqkeiD~LEDeL~~eKek~k~i~~ 163 (175)
T 3mud_A 119 VENPAEVIRELICYC-----------LDTTAKNEKSIDDLEEKVAHAKEENLNMHQ 163 (175)
T ss_dssp CSCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888887654 467889999999999999888887776543
No 76
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=25.24 E-value=1.1e+02 Score=23.48 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=40.0
Q ss_pred HHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 138 SSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 138 ~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
..-+.|...-..|+.||-+..|..+.++...+++||..-+..+..+......|+.
T Consensus 59 ~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~El~a~~~~l~~v~~~g~~Li~ 113 (149)
T 3f31_A 59 EKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMIS 113 (149)
T ss_dssp HHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666778899988889999999999999998777766665544444443
No 77
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.16 E-value=1.1e+02 Score=24.18 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
.+-|..||.+|...+.||..|+.+|..-..|
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999999999998764444
No 78
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.07 E-value=1.4e+02 Score=22.54 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
|..|+.+++.++.++..++.++..++.+...+..
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~ 36 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEI 36 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666555554444
No 79
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=24.87 E-value=95 Score=26.39 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.+|..+-..+..|+++...++.+...++.+.+
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555444444444444433
No 80
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.86 E-value=1.1e+02 Score=23.54 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
..+..|+.+|+.|+.+|..++..|.
T Consensus 16 ~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 16 EKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766665443
No 81
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.81 E-value=61 Score=25.92 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 026556 167 SELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 167 ~~LqaeLa~aqaeL~~~q~q~a 188 (237)
++|+.+|..++.||.++++|++
T Consensus 15 eEL~~~L~eLK~ELf~LRfq~a 36 (123)
T 2zkr_v 15 EELLKQLDDLKVELSQLRVAKV 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777765
No 82
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.47 E-value=2e+02 Score=24.85 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026556 157 GAICHLQKQVSELQAQLAKAQAELVTMESQQRN 189 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~ 189 (237)
-.|..|+.+|.+++.+|..++.+|..+..+...
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~ 258 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRESGE 258 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999988777433
No 83
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.31 E-value=1.5e+02 Score=20.36 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a 188 (237)
+..|..+...|-+-|..++.||..++.+-.
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556677777777777765543
No 84
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.19 E-value=1.6e+02 Score=22.84 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQA 178 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqa 178 (237)
|..|.++|+.|+.+|..++.
T Consensus 40 i~elrr~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLS 59 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555544443
No 85
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=24.04 E-value=64 Score=25.86 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.++|..+|..++.||.++++|++
T Consensus 16 ~eEL~~~L~eLK~ELf~LRfq~a 38 (124)
T 3iz5_c 16 KDDLTKQLAELKTELGQLRIQKV 38 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777765
No 86
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=23.84 E-value=2.9e+02 Score=22.84 Aligned_cols=51 Identities=6% Similarity=0.149 Sum_probs=38.1
Q ss_pred HHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556 142 YEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192 (237)
Q Consensus 142 YEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~ 192 (237)
-|......+|+.+-+..|..++++...++.+|...+..+..+......|+.
T Consensus 130 ~~k~~~l~~~~~~d~~~v~~l~~~h~~~~~~l~~~~~~v~~l~~~a~~L~~ 180 (323)
T 3edv_A 130 QDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQA 180 (323)
T ss_dssp HHHHHTCCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444568888889999999999999999998888777666555444443
No 87
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=23.71 E-value=66 Score=25.80 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.++|..+|..++.||.++++|++
T Consensus 15 ~eEL~~~L~eLK~ELf~LRfq~a 37 (124)
T 4a17_U 15 EEQLVGELGKLQTELSQLRIAKI 37 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777765
No 88
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=23.22 E-value=67 Score=25.59 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.++|+.+|..++.||.++++|++
T Consensus 14 ~eEL~~~L~eLK~ELf~LRfq~a 36 (120)
T 3u5e_h 14 KEQLASQLVDLKKELAELKVQKL 36 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777765
No 89
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=22.94 E-value=2.9e+02 Score=22.04 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=47.5
Q ss_pred cchHHHHHHHHHHhhccccCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 131 SQRADAVSSMVYEASARIRDPVY-GCAGAICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 131 ~qR~dAv~SLvYEA~aR~rDPVy-GCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
.+|...+++=+=.|.-=..|||. ..+-.|..|+..-+..++.|..++.++..+
T Consensus 18 AKrAa~fNnW~e~A~EdL~D~~~v~sleEI~~L~~~He~F~~~L~~a~~e~~~i 71 (129)
T 1wlx_A 18 AKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAI 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhHHHHhccchhhccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 47888999999899988999999 789999999999999999999999888765
No 90
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.85 E-value=1.1e+02 Score=23.10 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTM 183 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~ 183 (237)
=.-|..|+++|..++.+|..++..|...
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888777777643
No 91
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=22.61 E-value=2.4e+02 Score=21.67 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=0.0
Q ss_pred hchhhHHHHhhc---------------CCccchHHHHHHHHHHhhcccc--CCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 116 FGASNIIKFLQE---------------LPESQRADAVSSMVYEASARIR--DPVYGCAGAICHLQKQVSELQAQLAKAQA 178 (237)
Q Consensus 116 FG~SNV~KmLq~---------------lp~~qR~dAv~SLvYEA~aR~r--DPVyGCvGiI~~Lq~qI~~LqaeLa~aqa 178 (237)
|.-|.+.++|++ -....-++++++|-|-+.++.. .|+---.-....|.++++..+.++..++.
T Consensus 24 yRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~~L~~ 103 (117)
T 3kin_B 24 YRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKS 103 (117)
T ss_dssp GGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhh
Q 026556 179 ELVTMESQ 186 (237)
Q Consensus 179 eL~~~q~q 186 (237)
++..++.+
T Consensus 104 ~i~~Le~e 111 (117)
T 3kin_B 104 VIQHLEVE 111 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 92
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=22.25 E-value=93 Score=24.20 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026556 157 GAICHLQKQVSELQAQLAKAQAE 179 (237)
Q Consensus 157 GiI~~Lq~qI~~LqaeLa~aqae 179 (237)
++|..||.+|.+|+.+|+.+.++
T Consensus 52 ~~V~~lq~Ki~elkr~lAd~v~~ 74 (96)
T 2ic9_A 52 AAVSALETKLGELKRELADLIAA 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
No 93
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=22.25 E-value=2.2e+02 Score=20.44 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 026556 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLIC 195 (237)
Q Consensus 156 vGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~~~ 195 (237)
|-.|-.|..++..|+.+....+.-+...+.+..-|-.+++
T Consensus 6 VDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vr 45 (61)
T 3l4f_A 6 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467789999999999999888888888777777777665
No 94
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=22.19 E-value=76 Score=29.68 Aligned_cols=68 Identities=7% Similarity=0.113 Sum_probs=45.3
Q ss_pred cchhHhhhhhchhhHHHHhhc---CCccchHHHHHHHHHHhh----ccccCCCcccHHH------------------HHH
Q 026556 107 YKFTIAHRVFGASNIIKFLQE---LPESQRADAVSSMVYEAS----ARIRDPVYGCAGA------------------ICH 161 (237)
Q Consensus 107 ~~F~~vhKVFG~SNV~KmLq~---lp~~qR~dAv~SLvYEA~----aR~rDPVyGCvGi------------------I~~ 161 (237)
+.+..++|.|...+-.=++|+ +..+++.+-..-+|++.+ .|+.-|+.||+-. +..
T Consensus 144 e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~~ 223 (424)
T 2pbi_A 144 ENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTA 223 (424)
T ss_dssp HHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHHH
T ss_pred HHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHHH
Confidence 455667777776666656654 334444455666666655 7889999998743 456
Q ss_pred HHHHHHHHHHHHH
Q 026556 162 LQKQVSELQAQLA 174 (237)
Q Consensus 162 Lq~qI~~LqaeLa 174 (237)
++.+|++|+.+|.
T Consensus 224 ~r~~veqLk~~l~ 236 (424)
T 2pbi_A 224 VRKEIMYYQQALM 236 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777764
No 95
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=22.10 E-value=55 Score=29.87 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=18.0
Q ss_pred CCCCcccCCChhhHHh-hh---------cCccCCcc
Q 026556 72 SPPPIVLSPCAACKIL-RR---------RCVEKCVL 97 (237)
Q Consensus 72 ~~~~~~~s~CAACK~l-RR---------rC~~dCil 97 (237)
..-|--+..|.|||.. || +|..+|.+
T Consensus 61 ~g~hygv~~C~~C~~FFrR~~~~~~~~~~c~~~C~~ 96 (419)
T 3dzy_D 61 SGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLNCRI 96 (419)
T ss_dssp CSBCSSSBCCHHHHHHHHHHHTTTCCCCCCCSCCCC
T ss_pred CCCccCcccchhhhHHHccchhcccccccccCCCCc
Confidence 3456677899999944 43 57777764
No 96
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.77 E-value=1.5e+02 Score=22.53 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=32.1
Q ss_pred HHHHhhcCCcc------chHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 121 IIKFLQELPES------QRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 121 V~KmLq~lp~~------qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
+-.+|..|+.+ +|.-...-=.|-+++|.+= +-.+..|+.++..|+.|+..++.|+..
T Consensus 11 LN~~L~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr-----~~q~~~LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 11 LNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKR-----VQQKHHLENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp HHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666654 3445566668999988762 344445555555555555554444443
No 97
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.66 E-value=1.1e+02 Score=22.53 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVTMESQ 186 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~~q~q 186 (237)
|..|++||..+..+-+.+..|+-+++..
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~ 29 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAED 29 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4667888887777777777777766544
No 98
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.61 E-value=1.7e+02 Score=21.77 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELVT 182 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~~ 182 (237)
|..|+++|..+..+-+.+..|+.+
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555444
No 99
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.10 E-value=2e+02 Score=21.81 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026556 158 AICHLQKQVSELQAQLAKAQAELVTMES 185 (237)
Q Consensus 158 iI~~Lq~qI~~LqaeLa~aqaeL~~~q~ 185 (237)
-+..|+.+++.|+.|++.++.|+..|+.
T Consensus 56 e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 56 EKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777766665544
No 100
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.07 E-value=45 Score=25.19 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 026556 166 VSELQAQLAKAQAELVTMESQQR 188 (237)
Q Consensus 166 I~~LqaeLa~aqaeL~~~q~q~a 188 (237)
.++|+.+|..++.||.++++|++
T Consensus 13 ~eEL~~~L~eLK~ELf~LRfq~a 35 (86)
T 3jyw_X 13 KEQLASQLVDLKKELAELKVQKL 35 (86)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888876
No 101
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.69 E-value=1.5e+02 Score=22.18 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAELV 181 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL~ 181 (237)
-.+|..+|..++.+++.++.+..
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~ 58 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENK 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776643
No 102
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.50 E-value=1.5e+02 Score=20.45 Aligned_cols=20 Identities=5% Similarity=0.096 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026556 160 CHLQKQVSELQAQLAKAQAE 179 (237)
Q Consensus 160 ~~Lq~qI~~LqaeLa~aqae 179 (237)
..|..+|..|+.++..++.+
T Consensus 14 ~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 103
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=20.32 E-value=1.1e+02 Score=23.82 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=40.2
Q ss_pred HHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 026556 138 SSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLI 191 (237)
Q Consensus 138 ~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~ 191 (237)
..-+.|...-+.|+.||-...|..|.++-..+++||...+..+..+......|+
T Consensus 69 ~~Wi~ek~~~a~~~~~~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~~Li 122 (161)
T 3lbx_A 69 GKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERF 122 (161)
T ss_dssp HHHHHHHHHHHHTTSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667888898899999999999999999988877776654444443
No 104
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.30 E-value=1.6e+02 Score=25.62 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 026556 162 LQKQVSELQAQLAKAQAELVTMES 185 (237)
Q Consensus 162 Lq~qI~~LqaeLa~aqaeL~~~q~ 185 (237)
|++.|++.++|+...+++|+..+.
T Consensus 183 l~~~L~~~~~e~~s~~~~~~~~~~ 206 (228)
T 3q0x_A 183 LSDDLSRTRDDRDSMVAQLAQCRQ 206 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 105
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.07 E-value=1.9e+02 Score=21.64 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 026556 161 HLQKQVSELQAQLAKAQAELVTMESQQRNLITL 193 (237)
Q Consensus 161 ~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~~ 193 (237)
.++.++..|+.|-+.++.+|..++.+-..|-.+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444444433
No 106
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.05 E-value=1.3e+02 Score=22.77 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026556 159 ICHLQKQVSELQAQLAKAQAEL 180 (237)
Q Consensus 159 I~~Lq~qI~~LqaeLa~aqaeL 180 (237)
|..|+.++.+|+.++..++++|
T Consensus 10 i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444433
Done!