BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026557
MGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPR
EHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDE
QNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSA
VDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG

High Scoring Gene Products

Symbol, full name Information P value
AT1G09290 protein from Arabidopsis thaliana 2.1e-61

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026557
        (237 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2203033 - symbol:AT1G09290 "AT1G09290" species...   628  2.1e-61   1


>TAIR|locus:2203033 [details] [associations]
            symbol:AT1G09290 "AT1G09290" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 UniGene:At.42232 EMBL:AY035155
            IPI:IPI00542417 RefSeq:NP_172400.2 ProteinModelPortal:Q7XBQ8
            PaxDb:Q7XBQ8 PRIDE:Q7XBQ8 EnsemblPlants:AT1G09290.1 GeneID:837450
            KEGG:ath:AT1G09290 eggNOG:NOG297884 OMA:QWCHRIF
            ProtClustDB:CLSN2680693 Genevestigator:Q7XBQ8 Uniprot:Q7XBQ8
        Length = 348

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 133/231 (57%), Positives = 163/231 (70%)

Query:     8 GAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTI 67
             G +   +E D+     +N     +K   N E +  MSLVKLT++GLLL TFP E+SPNT 
Sbjct:   117 GEKTVPLENDALQETGENPNVEDLKL-ANEEHNSLMSLVKLTKSGLLLFTFPVENSPNTT 175

Query:    68 NIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRP 127
             NIVS +FQS+ SG+LK+P+WCHRIFP+QATC L EKEL+ TVSKLV +FVND+ N LS+P
Sbjct:   176 NIVSRVFQSMESGALKAPIWCHRIFPVQATCGLTEKELRETVSKLVQRFVNDKDNTLSKP 235

Query:   128 VKFAVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSP 186
             VKFA GY RRG EE + KI KD  D  V   LLDR KCF  VAA VK++V DS VDLKSP
Sbjct:   236 VKFAAGYQRRGAEETKGKIRKDASDVLVQCPLLDRIKCFETVAAGVKDIVPDSVVDLKSP 295

Query:   187 ELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG 237
             EL VLVELLP+S + S   V  VS+LP +LV+TKP+L I+ LV  +  K G
Sbjct:   296 ELCVLVELLPLSRISSGSFVAAVSVLPHRLVSTKPKLCIKPLVPESKHKKG 346


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      237       237   0.00090  113 3  11 23  0.47    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.52u 0.08s 21.60t   Elapsed:  00:00:01
  Total cpu time:  21.52u 0.08s 21.60t   Elapsed:  00:00:01
  Start:  Fri May 10 19:25:53 2013   End:  Fri May 10 19:25:54 2013

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