BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026557
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M3K1|GALT_STRT2 Galactose-1-phosphate uridylyltransferase OS=Streptococcus
thermophilus (strain ATCC BAA-250 / LMG 18311) GN=galT
PE=3 SV=2
Length = 493
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 159 LDR----NKCFTIVAAAVKEVVSDSA--VDLKSPELSVLVELLPISGLPSELLVVGVSIL 212
LDR NK FT+V V +V +DS+ +DLK L V+ + L E ++G ++
Sbjct: 22 LDRIYLTNKVFTLVGEGVADVETDSSELIDLKDQLLQAGVKAGSVGELNEEQDIIGAQLM 81
Query: 213 PQKLVTTKPRLSIR 226
L+T +P + R
Sbjct: 82 --DLITPRPSVVNR 93
>sp|Q5LYY8|GALT_STRT1 Galactose-1-phosphate uridylyltransferase OS=Streptococcus
thermophilus (strain CNRZ 1066) GN=galT PE=3 SV=2
Length = 493
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 159 LDR----NKCFTIVAAAVKEVVSDSA--VDLKSPELSVLVELLPISGLPSELLVVGVSIL 212
LDR NK FT+V V +V +DS+ +DLK L V+ + L E ++G ++
Sbjct: 22 LDRIYLTNKVFTLVGEGVADVETDSSELIDLKDQLLQAGVKAGSVGELNEEQDIIGAQLM 81
Query: 213 PQKLVTTKPRLSIR 226
L+T +P + R
Sbjct: 82 --DLITPRPSVVNR 93
>sp|P0A1Z2|SKP_SALTY Chaperone protein skp OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=skp PE=1 SV=1
Length = 161
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 52 GLLLLTFPREHSPNTINIVS--NIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATV 109
GL L + + I IV+ N+FQ + + S + A E +LQ+ +
Sbjct: 9 GLGLAMVTSAQAADKIAIVNMGNLFQQVAQKTGVSNTLENEFKGRAAELQKMETDLQSKM 68
Query: 110 SKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVA 169
+L ++ KL + V R+ F +K KD +RNK T +
Sbjct: 69 QRLQSMKAGSDRTKLEKDVM----SQRQTFAQKAQAFEKDRARRSNE---ERNKLVTRIQ 121
Query: 170 AAVKEVVSDSAVDL 183
AVK+V +D ++DL
Sbjct: 122 TAVKKVANDQSIDL 135
>sp|P0A1Z3|SKP_SALTI Chaperone protein skp OS=Salmonella typhi GN=skp PE=3 SV=1
Length = 161
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 52 GLLLLTFPREHSPNTINIVS--NIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATV 109
GL L + + I IV+ N+FQ + + S + A E +LQ+ +
Sbjct: 9 GLGLAMVTSAQAADKIAIVNMGNLFQQVAQKTGVSNTLENEFKGRAAELQKMETDLQSKM 68
Query: 110 SKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVA 169
+L ++ KL + V R+ F +K KD +RNK T +
Sbjct: 69 QRLQSMKAGSDRTKLEKDVM----SQRQTFAQKAQAFEKDRARRSNE---ERNKLVTRIQ 121
Query: 170 AAVKEVVSDSAVDL 183
AVK+V +D ++DL
Sbjct: 122 TAVKKVANDQSIDL 135
>sp|Q5PD64|SKP_SALPA Chaperone protein skp OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=skp PE=3 SV=1
Length = 161
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 52 GLLLLTFPREHSPNTINIVS--NIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATV 109
GL L + + I IV+ N+FQ + + S + A E +LQ+ +
Sbjct: 9 GLGLAMVTSAQAADKIAIVNMGNLFQQVAQKTGVSNTLENEFKGRAAELQKMETDLQSKM 68
Query: 110 SKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVA 169
+L ++ KL + V R+ F +K KD +RNK T +
Sbjct: 69 QRLQSMKAGSDRTKLEKDVM----SQRQTFAQKAQAFEKDRARRSNE---ERNKLVTRIQ 121
Query: 170 AAVKEVVSDSAVDL 183
AVK+V +D ++DL
Sbjct: 122 TAVKKVANDQSIDL 135
>sp|Q57T30|SKP_SALCH Chaperone protein skp OS=Salmonella choleraesuis (strain SC-B67)
GN=skp PE=3 SV=1
Length = 161
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 52 GLLLLTFPREHSPNTINIVS--NIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATV 109
GL L + + I IV+ N+FQ + + S + A E +LQ+ +
Sbjct: 9 GLGLAMVTSAQAADKIAIVNMGNLFQQVAQKTGVSNTLENEFKGRAAELQKMETDLQSKM 68
Query: 110 SKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVA 169
+L ++ KL + V R+ F +K KD +RNK T +
Sbjct: 69 QRLQSMKAGSDRTKLEKDVM----SQRQTFAQKAQAFEKDRARRSNE---ERNKLVTRIQ 121
Query: 170 AAVKEVVSDSAVDL 183
AVK+V +D ++DL
Sbjct: 122 TAVKKVANDQSIDL 135
>sp|Q9ZB09|GALT_STRTR Galactose-1-phosphate uridylyltransferase OS=Streptococcus
thermophilus GN=galT PE=3 SV=1
Length = 493
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 159 LDR----NKCFTIVAAAVKEVVSDSA--VDLKSPELSVLVELLPISGLPSELLVVGVSIL 212
LDR NK FT+V V ++ +DS+ +DLK L V+ + L E ++G ++
Sbjct: 22 LDRIYLTNKVFTLVGEGVADIETDSSELIDLKDQLLQAGVKAGSVGELKEEQDIIGAQLM 81
Query: 213 PQKLVTTKPRLSIR 226
L+T +P + R
Sbjct: 82 --DLITPRPSVVNR 93
>sp|Q12083|MLH3_YEAST DNA mismatch repair protein MLH3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MLH3 PE=1 SV=1
Length = 715
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 152 DSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVEL 194
DSDVS L C +A+AV+E+V +S VD + + V+++L
Sbjct: 9 DSDVSERLKSQACTVSLASAVREIVQNS-VDAHATTIDVMIDL 50
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,833,937
Number of Sequences: 539616
Number of extensions: 3138390
Number of successful extensions: 5906
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5903
Number of HSP's gapped (non-prelim): 21
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)