Query 026557
Match_columns 237
No_of_seqs 117 out of 188
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 09:34:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3943 THUMP domain-containin 100.0 1.7E-40 3.6E-45 293.3 8.8 189 7-224 82-274 (291)
2 PF02926 THUMP: THUMP domain; 99.7 2.1E-16 4.6E-21 126.7 9.8 129 44-213 15-144 (144)
3 COG1818 Predicted RNA-binding 99.2 4.4E-11 9.6E-16 102.7 8.3 135 43-223 29-163 (175)
4 PRK01565 thiamine biosynthesis 98.6 2.3E-07 4.9E-12 88.1 11.0 111 51-198 46-157 (394)
5 PRK01269 tRNA s(4)U8 sulfurtra 98.4 1.9E-06 4.2E-11 83.7 12.0 124 85-234 70-213 (482)
6 PRK08384 thiamine biosynthesis 98.2 1.4E-05 3E-10 76.1 11.5 89 88-198 72-161 (381)
7 TIGR00342 thiazole biosynthesi 98.1 2.9E-05 6.4E-10 73.2 10.9 82 90-198 71-153 (371)
8 COG0301 ThiI Thiamine biosynth 97.8 0.00017 3.7E-09 68.9 10.5 101 88-213 70-183 (383)
9 TIGR01177 conserved hypothetic 93.3 0.55 1.2E-05 43.3 9.1 73 97-196 61-133 (329)
10 PRK11783 rlmL 23S rRNA m(2)G24 84.0 20 0.00044 36.8 12.9 145 4-212 7-153 (702)
11 COG0116 Predicted N6-adenine-s 81.7 5.9 0.00013 38.3 7.5 100 85-212 53-155 (381)
12 PRK14835 undecaprenyl pyrophos 48.0 52 0.0011 30.4 6.1 88 45-138 81-175 (275)
13 PRK14828 undecaprenyl pyrophos 43.1 65 0.0014 29.4 5.9 83 45-138 67-156 (256)
14 KOG2671 Putative RNA methylase 39.9 42 0.00091 32.7 4.3 49 129-196 100-149 (421)
15 PF13590 DUF4136: Domain of un 34.2 1.3E+02 0.0029 23.6 5.9 57 126-198 16-72 (151)
16 TIGR00055 uppS undecaprenyl di 28.0 68 0.0015 28.8 3.4 18 45-62 39-56 (226)
17 PRK14837 undecaprenyl pyrophos 26.3 2E+02 0.0043 26.0 6.1 83 45-138 46-138 (230)
18 TIGR01213 conserved hypothetic 22.5 1.3E+02 0.0028 29.3 4.4 33 163-196 117-149 (388)
19 PRK14838 undecaprenyl pyrophos 21.7 1.6E+02 0.0035 26.7 4.7 32 103-138 109-140 (242)
20 KOG2715 Uncharacterized conser 20.5 1.1E+02 0.0025 26.9 3.3 35 43-77 20-54 (210)
21 PRK14840 undecaprenyl pyrophos 20.2 1.2E+02 0.0025 27.8 3.4 18 45-62 62-79 (250)
No 1
>KOG3943 consensus THUMP domain-containing proteins [General function prediction only]
Probab=100.00 E-value=1.7e-40 Score=293.33 Aligned_cols=189 Identities=17% Similarity=0.239 Sum_probs=167.9
Q ss_pred cccccCChHHHHHhhhhhhccccCccccCC--CCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcC--CC
Q 026557 7 DGAEINSIEEDSAGGLQKNECHSSVKTDTN--TETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSG--SL 82 (237)
Q Consensus 7 ~~~~~~sie~~i~~el~~~~~~~~~~~~~~--~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~--~~ 82 (237)
.++..+++|+++..++++++++...++-+. ++++..|++|+++|+|+.|+++..+. .|.++|+.|++|+.+. +.
T Consensus 82 ~E~ap~gsE~~~~~aeaElkdEe~gddLk~~~~~~~~P~~Fv~~~~~Cv~f~~t~Kni--Vpe~~v~~i~~dm~elk~k~ 159 (291)
T KOG3943|consen 82 KEQAPSGSEGEDDDAEAELKDEEVGDDLKASTEMRLRPFQFVESGANCVVFIRTLKNI--VPEKLVHHILQDMYELKTKK 159 (291)
T ss_pred cccCCCCCcCCCChHHHhhhhhhhHHHHhhhhhhhcCchhhhhccCceEEeecccCcc--CchHHHHHHHHHHHhhhccc
Confidence 445578999999999999988754432222 44667799999999999999998765 8999999999999885 47
Q ss_pred CCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChH
Q 026557 83 KSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRN 162 (237)
Q Consensus 83 k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~ 162 (237)
+++||+|||+||++||.|.+++|.+++..++.+||+.... .+-.||+|+|++|| |+++.|+
T Consensus 160 kRtR~~Qr~~Pi~~tc~a~le~m~k~a~~VI~p~fkap~t--gK~~tf~VE~k~RN-----------------n~~v~r~ 220 (291)
T KOG3943|consen 160 KRTRVIQRMLPISGTCKAFLEDMKKYAETVIEPWFKAPNT--GKKGTFQVEYKSRN-----------------NSHVNRE 220 (291)
T ss_pred hhhhhhhhhccccchHHhhHHHHHHHHHHhhcccccCCCC--CcCceEEEEEEecc-----------------ccchhHH
Confidence 8899999999999999999999999999999999975432 25669999999999 9999999
Q ss_pred HHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEeeCCccccccccee
Q 026557 163 KCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLS 224 (237)
Q Consensus 163 ~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv~~y~~~~K~~l~ 224 (237)
+||++|+.+|...++..+|||+|||++|+|||++ ++.||||+++|+.++||+|.
T Consensus 221 ~vi~~V~~~Vc~l~se~~VdL~n~D~t~~Ve~~k--------s~I~~~Vv~dy~~~RKYnlq 274 (291)
T KOG3943|consen 221 EVIREVAGIVCTLNSENKVDLTNPDYTVVVEIIK--------AVICLSVVKDYMLFRKYNLQ 274 (291)
T ss_pred HHHHHHHHHHHhcCccceeeccCCCeEEEEEeee--------ceeeeeehHHHHHHHHhhHH
Confidence 9999999999999999999999999999999997 78999999999999999985
No 2
>PF02926 THUMP: THUMP domain; InterPro: IPR004114 The THUMP domain is shared by 4-thiouridine, pseudouridine synthases and RNA methylases[] and is probably an RNA-binding domain that adopts an alpha/beta fold similar to that found in the C-terminal domain of translation initiation factor 3 and ribosomal protein S8. The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets []. This domain is found in the thiamine biosynthesis proteins (ThiI) (see IPR003720 from INTERPRO).; PDB: 3TLJ_A 3TM5_B 3TM4_A 2DIR_A 3TMA_A 1VBK_B 3K0B_A 2C5S_A 3LDU_A 3V8V_B ....
Probab=99.68 E-value=2.1e-16 Score=126.66 Aligned_cols=129 Identities=23% Similarity=0.272 Sum_probs=101.6
Q ss_pred eeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhccccccc
Q 026557 44 SLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNK 123 (237)
Q Consensus 44 ~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~ 123 (237)
..+..+.. .+++......+....+.+.+.+. ..+|++|+.|++..|.+++++|.+.|..++..++....
T Consensus 15 ~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~--------~~~~~~ri~p~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 83 (144)
T PF02926_consen 15 EVIESGRG-RILIDVGGEDPEGDSEEIYRALE--------KLRGISRIIPICRFCEADLEEIKEKAKELLWEKFIKED-- 83 (144)
T ss_dssp CEECCTTC-EEEEETTEEEEEEHHHHHHHHHH--------HSSSESEEEEEEEEEESSHHHHHHHHHCSHGGGHSHTT--
T ss_pred EEEEccCC-EEEEEeCCccccCCHHHHHHHHh--------cccceeEEEEEEEEcCCCHHHHHHHHHHHHHHHhCCCC--
Confidence 33344444 45565533222335666666666 34599999999999999999999999999998875432
Q ss_pred CCCCeeeEEEeeccCchhhccCCCCCCCCCcccc-CCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecCCCCC
Q 026557 124 LSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPS 202 (237)
Q Consensus 124 ~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~g~~~ 202 (237)
.+|||.+++|+ +. .+.++++.+.|+++|....+ ++|||+|||++|.||+++
T Consensus 84 ----~tF~V~~~r~~-----------------~~~~~~s~ei~~~vg~~i~~~~~-~~Vdl~~Pd~~i~Vev~~------ 135 (144)
T PF02926_consen 84 ----KTFAVRCRRRG-----------------KHFPFTSMEIEREVGDAIKEKGG-PKVDLKNPDVVIHVEVRK------ 135 (144)
T ss_dssp ----SEEEEEEEEES-----------------SSSSSCHHHHHHHHHHHHHHHHH-TEE-SSSSSEEEEEEEET------
T ss_pred ----CEEEEEEEEcC-----------------CccccCHHHHHHHHHHHHHHHhC-CCccCcCcCEEEEEEEEC------
Confidence 29999999999 77 89999999999999997654 899999999999999997
Q ss_pred cccEEEEEeeC
Q 026557 203 ELLVVGVSILP 213 (237)
Q Consensus 203 ~~~vcgvSVv~ 213 (237)
..|+||+.|
T Consensus 136 --~~~~i~i~~ 144 (144)
T PF02926_consen 136 --DKCYISIDT 144 (144)
T ss_dssp --TEEEEEEES
T ss_pred --CEEEEEEeC
Confidence 789999975
No 3
>COG1818 Predicted RNA-binding protein, contains THUMP domain [General function prediction only]
Probab=99.21 E-value=4.4e-11 Score=102.67 Aligned_cols=135 Identities=24% Similarity=0.322 Sum_probs=98.8
Q ss_pred ceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccc
Q 026557 43 MSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQN 122 (237)
Q Consensus 43 f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~ 122 (237)
..+.-++..|++.+..- . |+.. ++. ..+..-++.|++|+...|.+++++|.+.|..++..+..
T Consensus 29 ~~~~~~g~~gvliv~~~--~--d~~~----~~~-----~~~~~~~~~rv~pv~~~~~~dldeI~~~~~~l~~~~i~---- 91 (175)
T COG1818 29 AEPRPTGFPGVLIVESE--L--DEEE----ALE-----KLKEVPEVERVIPVEIEVETDLDEIEEAAAELAEEKIK---- 91 (175)
T ss_pred ccccccCCceEEEEEcc--C--cHHH----HHH-----HhcCCCceeeEEEEEeeccCCHHHHHHHHHHHHhcccC----
Confidence 34556788899999872 2 3222 122 13467788999999999999999999999999998764
Q ss_pred cCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecCCCCC
Q 026557 123 KLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPS 202 (237)
Q Consensus 123 ~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~g~~~ 202 (237)
...+|||+-++|+ .-.+.--++=-.+.++|+. ..+..|||+|||++|-|||++
T Consensus 92 ---~~~tFaVr~~rRG-----------------~~~f~s~~~~v~vg~~v~~-~tg~~VdL~~Pd~vv~Vevl~------ 144 (175)
T COG1818 92 ---EGKTFAVRTKRRG-----------------KHDFTSRDVEVVVGEAVKK-ATGAEVDLEDPDKVVWVEVLG------ 144 (175)
T ss_pred ---CCCeEEEEEeecC-----------------CCCccccceeehhHHHHHH-HhCCcccCCCCCEEEEEEEec------
Confidence 3449999999999 2222222222223334443 247899999999999999997
Q ss_pred cccEEEEEeeCCcccccccce
Q 026557 203 ELLVVGVSILPQKLVTTKPRL 223 (237)
Q Consensus 203 ~~~vcgvSVv~~y~~~~K~~l 223 (237)
..+||||+|+.+...|+++
T Consensus 145 --~~a~Isv~~~~~e~~k~~~ 163 (175)
T COG1818 145 --DRAGISVLPGEKEEKKIKL 163 (175)
T ss_pred --CcceEEEeCchhhhhhccc
Confidence 6799999998877777644
No 4
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.64 E-value=2.3e-07 Score=88.06 Aligned_cols=111 Identities=14% Similarity=0.183 Sum_probs=84.7
Q ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeee
Q 026557 51 NGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKF 130 (237)
Q Consensus 51 ~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kF 130 (237)
.+-+|+.+. +. ++.++.. .+. +.==|+.+.|+.. |..++++|.+.+..++..+.. +..+|
T Consensus 46 ~~r~~v~~~-~~--~~~~~~~-~l~--------~vfGI~~~s~~~~-~~~~~e~I~~~~~~~~~~~~~-------~~~tF 105 (394)
T PRK01565 46 RDRMYIELN-GE--DYEEVIE-RLK--------KVFGIQSFSPVYK-VEKDLEAIKEAALELLKEVYK-------EGKTF 105 (394)
T ss_pred CCEEEEEeC-Cc--CHHHHHH-HHh--------hCCCcceEEEEEE-ECCCHHHHHHHHHHHHHhhcc-------CCCcE
Confidence 467888863 22 5554433 222 2333667778874 789999999999998887642 22489
Q ss_pred EEEeeccCchhhccCCCCCCCCCcccc-CCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecC
Q 026557 131 AVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPIS 198 (237)
Q Consensus 131 AI~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~ 198 (237)
||+.+|++ +. .++.+++-..|++.|....++.+|||+|||+.|.|||.+..
T Consensus 106 ~Vr~rR~~-----------------k~f~~tS~ei~r~vG~~I~~~~~~~~VdL~nPd~~i~vei~~~~ 157 (394)
T PRK01565 106 KVEARRSD-----------------KSFPLDSMELNRELGAYILENFPNLKVDVKNPDVTLRVEVRKEA 157 (394)
T ss_pred EEEEEECC-----------------CCCCCChHHHHHHHHHHHHhhCCCCcccccCCCeEEEEEEEcCe
Confidence 99999999 67 89999999999999987655689999999999999998763
No 5
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.44 E-value=1.9e-06 Score=83.75 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=93.7
Q ss_pred CceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHH
Q 026557 85 PVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKC 164 (237)
Q Consensus 85 tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~v 164 (237)
.==++++.|+..++..++++|.+.+..++..++. ..+|||+.++++ ...++-+++
T Consensus 70 vfGi~~~~~v~~~~~~~~e~I~~~a~~~~~~~~~--------~~tF~VrarR~~-----------------k~~~~S~ei 124 (482)
T PRK01269 70 IPGIHHFLEVEEYPFTDLHDIFEKALALYREQLE--------GKTFCVRVKRRG-----------------KHDFTSIDV 124 (482)
T ss_pred CCCceEEEEEEEECCCCHHHHHHHHHHHHHHhcC--------CCeEEEEEEeCC-----------------CCCCChHHH
Confidence 3346788999998889999999999998888763 128999999998 558889999
Q ss_pred HHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecC------------CCCCcccEEEEEeeCC--------ccccccccee
Q 026557 165 FTIVAAAVKEVVSDSAVDLKSPELSVLVELLPIS------------GLPSELLVVGVSILPQ--------KLVTTKPRLS 224 (237)
Q Consensus 165 I~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~------------g~~~~~~vcgvSVv~~--------y~~~~K~~l~ 224 (237)
-..|++.+.....+.+|||+|||+.|.|||.+.. |.|.|++=-.+.++.+ |+. .|...-
T Consensus 125 ~r~vG~~I~~~~~~~~VdL~nPD~~i~VeI~~d~~yv~~~~~~g~gGlP~g~~gk~lvllSGGiDS~va~~~~-~krG~~ 203 (482)
T PRK01269 125 ERYVGGGLNQHIESAGVDLKNPDVTVHLEIRDDRLYLVTERHEGLGGFPLGTQEDVLSLISGGFDSGVASYML-MRRGSR 203 (482)
T ss_pred HHHHHHHHHHhCCCCceeCCCCCEEEEEEEECCEEEEEEeeeecCCCCCccccCeEEEEEcCCchHHHHHHHH-HHcCCE
Confidence 9999999874445689999999999999998853 6676655444444432 332 234556
Q ss_pred eeeeccCCCc
Q 026557 225 IRALVSGTNA 234 (237)
Q Consensus 225 ~~al~~~~~~ 234 (237)
|.||..+.++
T Consensus 204 v~~l~f~~g~ 213 (482)
T PRK01269 204 VHYCFFNLGG 213 (482)
T ss_pred EEEEEEecCC
Confidence 7788776654
No 6
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.21 E-value=1.4e-05 Score=76.14 Aligned_cols=89 Identities=20% Similarity=0.160 Sum_probs=69.9
Q ss_pred eEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCcccc-CCChHHHHH
Q 026557 88 CHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFT 166 (237)
Q Consensus 88 i~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~ 166 (237)
|..+.|+.. |..++++|.+.|..++..++.... ....+|+|..+|++ .+ .++.+++=.
T Consensus 72 I~~~s~~~~-~~~~~~~i~~~~~~~~~~~~~~~~---~~~~tF~V~~rR~~-----------------k~f~~tS~ei~~ 130 (381)
T PRK08384 72 IVSLSPAME-IDAELEKINRTALKLFRRKKRELE---LEKPRFRVTARRIT-----------------KEFPLKSPEIQA 130 (381)
T ss_pred ceeEEEEEE-eCCCHHHHHHHHHHHHHHhhhccc---ccCCeEEEEEEeCC-----------------CCCCCChHHHHH
Confidence 456666654 457899999999999988764211 01248999999988 43 689999999
Q ss_pred HHHHHhhhcCCCCeeeCCCCCeEEEEEEeecC
Q 026557 167 IVAAAVKEVVSDSAVDLKSPELSVLVELLPIS 198 (237)
Q Consensus 167 ~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~ 198 (237)
.|++.|... .+.+|||+|||+.|.|||-+..
T Consensus 131 ~vG~~i~~~-~~~~Vdl~~Pd~~i~vEir~~~ 161 (381)
T PRK08384 131 KVGEYILEN-EESEVDLHNYDIEVGVELMEGK 161 (381)
T ss_pred HHHHHHHhc-CCCCccCcCCCEEEEEEEEeCe
Confidence 999999764 4689999999999999997763
No 7
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.08 E-value=2.9e-05 Score=73.23 Aligned_cols=82 Identities=24% Similarity=0.332 Sum_probs=63.6
Q ss_pred eecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCcccc-CCChHHHHHHH
Q 026557 90 RIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIV 168 (237)
Q Consensus 90 RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~~V 168 (237)
.+-|+. .|..++++|. .+..++..+... ..+|||+.+|++ .+ .++.+++-..|
T Consensus 71 ~~s~~~-~~~~~~~~i~-~~~~~~~~~~~~-------~~tF~Vr~kR~~-----------------k~f~~~S~ei~r~~ 124 (371)
T TIGR00342 71 SFSPAF-KCDLPFDEIH-ILLKALKQLRKE-------GKTFKVRTKRRG-----------------KDFPLNSVEVNKYV 124 (371)
T ss_pred EEEEEE-EECCCHHHHH-HHHHHHHHhhcc-------CCcEEEEEEECC-----------------CCCCCChHHHHHHH
Confidence 344433 4577899999 777888776532 238999999998 42 46699999999
Q ss_pred HHHhhhcCCCCeeeCCCCCeEEEEEEeecC
Q 026557 169 AAAVKEVVSDSAVDLKSPELSVLVELLPIS 198 (237)
Q Consensus 169 A~~V~~~~~~hkVDLknPd~~IlVEV~k~~ 198 (237)
++.|... .+.+|||+|||+.|-|||.+..
T Consensus 125 G~~i~~~-~~~~VdL~nPd~~i~vei~~~~ 153 (371)
T TIGR00342 125 GGGIVEK-IGLKVDLTNPDITVHIEIREDE 153 (371)
T ss_pred HHHHHHH-cCCcccccCCCEEEEEEEECCE
Confidence 9999764 3489999999999999998753
No 8
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=97.80 E-value=0.00017 Score=68.95 Aligned_cols=101 Identities=19% Similarity=0.199 Sum_probs=72.5
Q ss_pred eEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccc-cCCChHHHHH
Q 026557 88 CHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVS-ALLDRNKCFT 166 (237)
Q Consensus 88 i~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n-~~L~R~~vI~ 166 (237)
|+-+.|+.. |..+.+++...+..++...+. + ..+|+|..+|++ . =.++-.++=.
T Consensus 70 I~s~sp~~~-v~~~~~~i~~~~~~~~~~~~~--~-----g~tF~V~arR~~-----------------k~f~~~S~ev~~ 124 (383)
T COG0301 70 IVSFSPAME-VEASLEEIIKAALLALRRKYK--E-----GKTFKVRARRAG-----------------KEFPFTSLEVNR 124 (383)
T ss_pred cceeceeEE-ecCCcHHHHHHHHHHHHHhhh--c-----CCeEEEEEEeCC-----------------CCCCCCHHHHHH
Confidence 445556544 455666666666566655543 2 239999999999 4 5788899999
Q ss_pred HHHHHhhhcCCCCeeeCCCCCeEEEEEEeecC------------CCCCcccEEEEEeeC
Q 026557 167 IVAAAVKEVVSDSAVDLKSPELSVLVELLPIS------------GLPSELLVVGVSILP 213 (237)
Q Consensus 167 ~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~------------g~~~~~~vcgvSVv~ 213 (237)
.|++.|....++.+|||+|||++|.|||-... |.|.|++==.++.|.
T Consensus 125 ~vG~~i~~~~~~~~Vdl~~Pdv~i~iEIr~~~ayi~~~~~~G~GGLPvGt~Gk~l~LlS 183 (383)
T COG0301 125 YVGEAILENIESAGVDLKNPDVEIHIEIREDKAYIYTERIKGPGGLPVGTQGKVLLLLS 183 (383)
T ss_pred HHHHHHHhhcccceeecCCCCeEEEEEEecCeEEEEEeeeccCCCCccccCCcEEEEEe
Confidence 99999987657899999999999999998533 566665555555443
No 9
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=93.35 E-value=0.55 Score=43.30 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=49.6
Q ss_pred eeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHHHHHhhhcC
Q 026557 97 TCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVV 176 (237)
Q Consensus 97 TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~VA~~V~~~~ 176 (237)
.|..+.++|.+.+..+--..+. ..+|+|..+.++ +...++..+-+++++.+...
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~--------~~sf~v~~~~~~-----------------~~~~~~~~~~~~ig~~i~~~- 114 (329)
T TIGR01177 61 YDTCAAKDLYDFVAGLEASDLD--------RKSFAVRVRDLR-----------------GYSVDKARLERKIGAILKKK- 114 (329)
T ss_pred hcCCCHHHHHHHHhhcchhhcc--------CCeEEEEEEecC-----------------CCCCCHHHHHHHHHHHHHhc-
Confidence 4445667787776643222221 148999998887 44666766666687777542
Q ss_pred CCCeeeCCCCCeEEEEEEee
Q 026557 177 SDSAVDLKSPELSVLVELLP 196 (237)
Q Consensus 177 ~~hkVDLknPd~~IlVEV~k 196 (237)
+.+|||+|||..|.|.+.+
T Consensus 115 -g~~v~l~~Pd~~i~v~~~~ 133 (329)
T TIGR01177 115 -GFKVSLRRPDIVVRVVITE 133 (329)
T ss_pred -CCccccCCCCeEEEEEEEC
Confidence 3599999999999998865
No 10
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=83.97 E-value=20 Score=36.83 Aligned_cols=145 Identities=15% Similarity=0.094 Sum_probs=79.5
Q ss_pred ccccccccCChHHHHHhhhhhhccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCC
Q 026557 4 KCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLK 83 (237)
Q Consensus 4 ~~~~~~~~~sie~~i~~el~~~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k 83 (237)
.|..+ +|+-+++||..|-. ..++. .+|=|++.. ++..+ .++.- ....
T Consensus 7 ~~~~G-----lE~~l~~El~~lg~----------------~~~~~-~~ggV~f~g------~~~~~-~~~nl----~~R~ 53 (702)
T PRK11783 7 SCAKG-----LEELLKDELEALGA----------------SECKV-VQGGVHFEG------DLELA-YRSCL----WSRL 53 (702)
T ss_pred ECCcc-----HHHHHHHHHHhcCC----------------cccEE-EcCEEEEEe------CHHHH-HHHHH----Hhcc
Confidence 46655 68888999998732 11222 244466664 34443 33432 1233
Q ss_pred CCceeEeecccceeeecCHHHHHHHHHHHH-HhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChH
Q 026557 84 SPVWCHRIFPIQATCVLKEKELQATVSKLV-LQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRN 162 (237)
Q Consensus 84 ~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll-~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~ 162 (237)
.+|-+.+|-... | .+.++|.+.++.+- ..||. ...+|+|....+++. ..++..--.
T Consensus 54 A~RVll~l~~f~--a-~~~~~Ly~~v~~i~W~~~l~-------~~~tf~V~~~~~~s~-------------l~~~~~~~~ 110 (702)
T PRK11783 54 ASRILLPLAEFK--V-YSDLDLYLGVQAIDWTEHFS-------PDKTFAVDFSGTNDE-------------IRNTQFGAL 110 (702)
T ss_pred hhheEEEeeeee--c-CCHHHHHHHHHcCCHHHhCC-------CCCeEEEEEEEecCC-------------ccCcHHHHH
Confidence 556666664322 2 27888887776531 12333 224899998876610 001111122
Q ss_pred HHHHHHHHHhhhcC-CCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557 163 KCFTIVAAAVKEVV-SDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL 212 (237)
Q Consensus 163 ~vI~~VA~~V~~~~-~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv 212 (237)
.+-++|.+.+.... ..-.||+++||+.|.|.+.+ .-|.+|+=
T Consensus 111 ~vKdAI~d~~~~~~~~rp~vd~~~pdv~i~~~~~~--------~~~~l~ld 153 (702)
T PRK11783 111 KVKDAIVDRFRRKGGPRPSVDKEQPDIRINARLNK--------GEATISLD 153 (702)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEEEeC--------CEEEEEEE
Confidence 33344444443222 12379999999999999986 45666664
No 11
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.68 E-value=5.9 Score=38.30 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=56.1
Q ss_pred CceeEeecccceee-ecCHHHHHHHHHHH-HHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChH
Q 026557 85 PVWCHRIFPIQATC-VLKEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRN 162 (237)
Q Consensus 85 tRfi~RL~PI~~TC-~A~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~ 162 (237)
+|-.+|+.=.-..| ..+.++|-+.+..+ ...||+.. .+|+|.++.=++... ++..--.
T Consensus 53 sRta~Ri~i~l~~fk~~~~~dly~~v~~i~w~~~~~~~-------~tf~V~~~~~~~~~~-------------~s~~~a~ 112 (381)
T COG0116 53 SRTASRILLPLGEFKAETLDDLYEAVKAINWEEYFPEG-------ATFAVRFRGVGSHLF-------------TSPDIAR 112 (381)
T ss_pred HHHHHhhheeeeeeeeCCHHHHHHHhhcCCHHHhCCCC-------CEEEEEEEeccCCcc-------------ccHHHHH
Confidence 44455655444555 44578887655443 45567543 399999654441000 1111112
Q ss_pred HHHHHHHHHhhh-cCCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557 163 KCFTIVAAAVKE-VVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL 212 (237)
Q Consensus 163 ~vI~~VA~~V~~-~~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv 212 (237)
.+=++|.+.... ....-.|||..||+.|=|++.+ ..|-|+|=
T Consensus 113 ~vkdAIvd~~~~~~~~r~~v~~~~Pdv~i~v~l~~--------~~~~l~iD 155 (381)
T COG0116 113 IVKDAIVDRFRRKYGRRPSVDLDGPDVRINVELDK--------DTATLGID 155 (381)
T ss_pred HHHHHHHHHHhhccCCCCCccccCCCeEEEEEEEc--------CEEEEEEe
Confidence 222333333332 2233489999999999999997 55666664
No 12
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=48.05 E-value=52 Score=30.42 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=41.0
Q ss_pred eeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhc---CCCCCCceeEeecccceeeecCH----HHHHHHHHHHHHhhc
Q 026557 45 LVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGS---GSLKSPVWCHRIFPIQATCVLKE----KELQATVSKLVLQFV 117 (237)
Q Consensus 45 ~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~---~~~k~tRfi~RL~PI~~TC~A~~----~eI~~~a~~ll~~~f 117 (237)
..+++++.+-+..++.++---|.+=|..++.=+.. .....+++... -|...+..+. +++++.+.++...--
T Consensus 81 c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~~--~irir~iGd~~~Lp~~l~~~i~~~e~~T~ 158 (275)
T PRK14835 81 CLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREARRMAVDPRIHAN--RVRVRAIGRHDGFPPKVLEALEELEERTE 158 (275)
T ss_pred HHHcCCCEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHhchhhhhhC--CeEEEEecChhhCCHHHHHHHHHHHHHhc
Confidence 34789999988877654422233223333222211 00010111110 2222333333 345555555544432
Q ss_pred ccccccCCCCeeeEEEeeccC
Q 026557 118 NDEQNKLSRPVKFAVGYNRRG 138 (237)
Q Consensus 118 ~~~~~~~~~p~kFAI~~~~Rn 138 (237)
+.. .-...+|+.|..|+
T Consensus 159 ~~~----~~~Lnia~~Yggr~ 175 (275)
T PRK14835 159 GHE----GMLLNIAVGYGGRE 175 (275)
T ss_pred CCC----CeEEEEEeccCCHH
Confidence 211 24578999998888
No 13
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=43.14 E-value=65 Score=29.43 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=39.7
Q ss_pred eeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhh---cCCCCCCceeEeecccceeeecCH----HHHHHHHHHHHHhhc
Q 026557 45 LVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLG---SGSLKSPVWCHRIFPIQATCVLKE----KELQATVSKLVLQFV 117 (237)
Q Consensus 45 ~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~---~~~~k~tRfi~RL~PI~~TC~A~~----~eI~~~a~~ll~~~f 117 (237)
..+++++.+-+..++.++---|.+=|..+++=+. ...... -.|...+..+. +++.+.+..+-....
T Consensus 67 ~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~-------~~irv~~iG~~~~lp~~~~~~~~~~e~~T~ 139 (256)
T PRK14828 67 CDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVRQLAPD-------GRWRVRHVGSLDLLPAPSANRLKEAEEATV 139 (256)
T ss_pred HHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHHHHHHHh-------CCeEEEEECChhhCCHHHHHHHHHHHHhhc
Confidence 3478999998888865443234333333332111 100001 12222233333 345555554444333
Q ss_pred ccccccCCCCeeeEEEeeccC
Q 026557 118 NDEQNKLSRPVKFAVGYNRRG 138 (237)
Q Consensus 118 ~~~~~~~~~p~kFAI~~~~Rn 138 (237)
+.. .-...+|+.|..|+
T Consensus 140 ~~~----~~~Lnia~~Yggr~ 156 (256)
T PRK14828 140 GND----GIKVNVAVGYGGRQ 156 (256)
T ss_pred CCC----CcEEEEEecCCCHH
Confidence 221 23568899998777
No 14
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=39.95 E-value=42 Score=32.70 Aligned_cols=49 Identities=18% Similarity=0.353 Sum_probs=32.1
Q ss_pred eeEEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEE-EEEEee
Q 026557 129 KFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSV-LVELLP 196 (237)
Q Consensus 129 kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~I-lVEV~k 196 (237)
+|+|.+..=| ..+..++.++.|+.. .=++-.-+|||+||+.+. ++|-+-
T Consensus 100 sfki~fetfg------------------k~~t~~e~~~~I~~f-~ylpfeG~Vnlk~Pq~~f~viE~y~ 149 (421)
T KOG2671|consen 100 SFKIRFETFG------------------KKLTQDEQVEIIESF-DYLPFEGPVNLKNPQHVFFVIEEYE 149 (421)
T ss_pred eeEEEEEEec------------------ccccHHHHHHHhhhh-eeccccceeccCCCceEEEEEEeec
Confidence 7888886544 446666666666632 223336899999999765 456664
No 15
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=34.23 E-value=1.3e+02 Score=23.60 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=41.5
Q ss_pred CCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecC
Q 026557 126 RPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPIS 198 (237)
Q Consensus 126 ~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~ 198 (237)
.-.+|++.....+ ....+.+....|.++|..++.. .|.+-+..+||++|-+.+.-..
T Consensus 16 ~ykTy~~~~~~~~--------------~~~~~~~~~~~i~~~v~~~L~~--~G~~~~~~~aDl~V~~~~~~~~ 72 (151)
T PF13590_consen 16 QYKTYAFVPSSSD--------------PAQSNPLDDQRIQDAVEQELAA--KGYRRVPENADLLVSYHYSVDE 72 (151)
T ss_pred CCCeEEEecCCcC--------------ccccCcHHHHHHHHHHHHHHHH--CCCeecccCCCEEEEEEEEEee
Confidence 4568998887321 0116778888899999988764 4777779999999998887543
No 16
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=27.97 E-value=68 Score=28.82 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=13.0
Q ss_pred eeecCCCeEEEEEeCCCC
Q 026557 45 LVKLTRNGLLLLTFPREH 62 (237)
Q Consensus 45 ~Vkl~~~g~vFi~t~~~~ 62 (237)
..+++++.+-+..|+.++
T Consensus 39 c~~~GI~~lT~yaFStEN 56 (226)
T TIGR00055 39 CANLGVECLTLYAFSTEN 56 (226)
T ss_pred HHHcCCCEEEEEEeehhh
Confidence 447888888888876543
No 17
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.34 E-value=2e+02 Score=25.98 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=40.1
Q ss_pred eeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcC----------CCCCCceeEeecccceeeecCHHHHHHHHHHHHH
Q 026557 45 LVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSG----------SLKSPVWCHRIFPIQATCVLKEKELQATVSKLVL 114 (237)
Q Consensus 45 ~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~----------~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~ 114 (237)
..+++++.+-+..|+.++---|.+=|..+++=+... ..-+-|++=++-. -.+++++.+..+-+
T Consensus 46 c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~-------Lp~~l~~~i~~~e~ 118 (230)
T PRK14837 46 SLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSGDIES-------LSEEVKKSIKDAIS 118 (230)
T ss_pred HHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcChhh-------CCHHHHHHHHHHHH
Confidence 347788888888876543223333223332221110 0111233332222 13456666655555
Q ss_pred hhcccccccCCCCeeeEEEeeccC
Q 026557 115 QFVNDEQNKLSRPVKFAVGYNRRG 138 (237)
Q Consensus 115 ~~f~~~~~~~~~p~kFAI~~~~Rn 138 (237)
.--+.. .--..+|+.|..|.
T Consensus 119 ~T~~n~----~~~Lnia~~Yggr~ 138 (230)
T PRK14837 119 FTKNFD----GLVLNLAINYGGRN 138 (230)
T ss_pred HhcCCC----CcEEEEEecCCCHH
Confidence 432211 23568899997777
No 18
>TIGR01213 conserved hypothetical protein TIGR01213. Members of this family show twilight-zone similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs.
Probab=22.46 E-value=1.3e+02 Score=29.33 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 026557 163 KCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLP 196 (237)
Q Consensus 163 ~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k 196 (237)
++=..|...|... .|-.||.+|||++|+|++..
T Consensus 117 E~nRevGk~~~~~-~gk~~d~~~Pdv~i~vd~~~ 149 (388)
T TIGR01213 117 EFNREVGKLFVKR-TGKEVDFERPDLVIMVEFEY 149 (388)
T ss_pred HHhHHHHHHHHHH-hCCCccCCCCCEEEEEEcCC
Confidence 3444444444332 27899999999999998763
No 19
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.73 E-value=1.6e+02 Score=26.67 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccC
Q 026557 103 KELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRG 138 (237)
Q Consensus 103 ~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn 138 (237)
+++++.+..+...--+.. .--..+||.|..|+
T Consensus 109 ~~l~~~i~~~e~~T~~~~----~~~lnia~~Yggr~ 140 (242)
T PRK14838 109 EEVQERLNECEEHTAKNT----GMCLVLALSYSSRW 140 (242)
T ss_pred HHHHHHHHHHHHHhcCCC----ceEEEEeecCCCHH
Confidence 456666655555543211 13468999998887
No 20
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=20.52 E-value=1.1e+02 Score=26.91 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=31.4
Q ss_pred ceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHh
Q 026557 43 MSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSL 77 (237)
Q Consensus 43 f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~ 77 (237)
=+.|++++-|-+|..|+..-+.||.-|..++|++-
T Consensus 20 s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~ 54 (210)
T KOG2715|consen 20 SLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQRE 54 (210)
T ss_pred eEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcc
Confidence 57899999999999998878889999999999953
No 21
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.23 E-value=1.2e+02 Score=27.77 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=13.0
Q ss_pred eeecCCCeEEEEEeCCCC
Q 026557 45 LVKLTRNGLLLLTFPREH 62 (237)
Q Consensus 45 ~Vkl~~~g~vFi~t~~~~ 62 (237)
..+++++.+-+..|+.++
T Consensus 62 c~~~GIk~lTvYaFS~EN 79 (250)
T PRK14840 62 ALHLGIEVLTLFAFSTEN 79 (250)
T ss_pred HHHcCCCEEEEEEeehhh
Confidence 457888988888776543
Done!