Query 026557
Match_columns 237
No_of_seqs 117 out of 188
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dir_A Thump domain-containing 99.8 1.4E-19 4.8E-24 139.0 10.6 94 95-218 4-97 (98)
2 2c5s_A THII, probable thiamine 98.6 8.9E-07 3E-11 82.8 14.2 109 51-196 57-166 (413)
3 1vbk_A Hypothetical protein PH 98.4 2E-06 6.7E-11 77.8 11.0 129 51-214 48-188 (307)
4 3tma_A Methyltransferase; thum 96.4 0.0052 1.8E-07 55.0 6.6 126 14-196 30-160 (354)
5 3k0b_A Predicted N6-adenine-sp 95.8 0.022 7.4E-07 52.7 7.8 140 3-212 19-165 (393)
6 3v97_A Ribosomal RNA large sub 95.6 0.16 5.3E-06 50.5 13.7 145 3-212 7-154 (703)
7 3ldu_A Putative methylase; str 95.3 0.18 6.1E-06 46.3 12.0 140 4-212 12-159 (385)
8 3ldg_A Putative uncharacterize 95.0 0.022 7.5E-07 52.6 4.8 140 3-212 9-158 (384)
9 3tm4_A TRNA (guanine N2-)-meth 94.4 0.19 6.4E-06 45.5 9.5 147 14-212 11-181 (373)
10 3o71_B Peptide of deleted in c 27.3 24 0.00081 20.8 1.1 17 178-194 4-20 (27)
11 4h8e_A Undecaprenyl pyrophosph 20.1 97 0.0033 27.2 4.2 32 103-138 125-156 (256)
No 1
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=99.81 E-value=1.4e-19 Score=138.95 Aligned_cols=94 Identities=17% Similarity=0.297 Sum_probs=84.8
Q ss_pred ceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHHHHHhhh
Q 026557 95 QATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKE 174 (237)
Q Consensus 95 ~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~VA~~V~~ 174 (237)
+.+|.+++++|.+.|..++.+||+.. ++.||||+++||+ ++.+++++++..|+++|..
T Consensus 4 ~~~~~~~~e~I~~~a~~~~~~~f~~~-----~~~TF~V~~kR~~-----------------k~~~~S~ei~~~vG~~i~~ 61 (98)
T 2dir_A 4 GSSGKAFLEDMKKYAETFLEPWFKAP-----NKGTFQIVYKSRN-----------------NSHVNREEVIRELAGIVCT 61 (98)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHSTT-----CCCEEEEEEECSS-----------------CCSSCHHHHHHHHHHHHHH
T ss_pred eEEEECCHHHHHHHHHHHHHHhcCcC-----CCceEEEEEEeCC-----------------CCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999998532 2359999999999 7799999999999999998
Q ss_pred cCCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEeeCCcccc
Q 026557 175 VVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVT 218 (237)
Q Consensus 175 ~~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv~~y~~~ 218 (237)
..++++|||+|||++|.|||.+ ..|+|||+++|+.+
T Consensus 62 ~~~~~kVdL~nPd~~I~VEI~~--------~~~~isv~~~y~~~ 97 (98)
T 2dir_A 62 LNSENKVDLTNPQYTVVVEIIK--------AVCCLSVVKSGPSS 97 (98)
T ss_dssp HCTTCEECSSSCSEEEEEEEET--------TEEEEEEEECCCTT
T ss_pred hCCCCeeEcCCCCEEEEEEEeC--------CEEEEEEccccccC
Confidence 7778999999999999999996 78999999999753
No 2
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.56 E-value=8.9e-07 Score=82.82 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=86.9
Q ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeee
Q 026557 51 NGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKF 130 (237)
Q Consensus 51 ~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kF 130 (237)
.|.+||.+..+ ++.+++.++ ++.=.|+++.|+.. |..++++|.+.|..++..++. +..||
T Consensus 57 ~gri~v~~~~~---~~~~~~~~L---------~~vfGI~~~~~v~~-~~~dle~I~~~~~~~~~~~~~-------~~~tF 116 (413)
T 2c5s_A 57 HDRMYIQLNGE---DHEAVSERL---------KDVFGIHKFNLAMK-VPSELEDIKKGALAAFLQVKG-------DVKTF 116 (413)
T ss_dssp SSCEEEECTTC---CHHHHHHHH---------TTCTTEEEEEEEEE-EESSHHHHHHHHHHHHHTCCS-------CCCEE
T ss_pred CCEEEEEeCCC---CHHHHHHHH---------hhCCCeEEEEEEEE-ecCCHHHHHHHHHHHHHhhcc-------CCCcE
Confidence 47789987422 566655543 24556889999877 468999999999888876543 22399
Q ss_pred EEEeeccCchhhccCCCCCCCCCcccc-CCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 026557 131 AVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLP 196 (237)
Q Consensus 131 AI~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k 196 (237)
+|..+|++ .. .++.+++-..|++.|....++.+|||+|||+.|-|||.+
T Consensus 117 ~V~~kR~~-----------------k~f~~~S~ei~r~vG~~i~~~~~~~~Vdl~~Pdi~i~vEI~~ 166 (413)
T 2c5s_A 117 KITVHRSY-----------------KHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRS 166 (413)
T ss_dssp EEEEEECC-----------------TTCSSCHHHHHHHHHHHHHTTSSSCEECSSSCSEEEEEEECS
T ss_pred EEEEEECC-----------------CCCCCChHHHHHHHHHHHHHhCCCCeeccCCCCeEEEEEEEe
Confidence 99999999 55 899999999999999987668899999999999999976
No 3
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=98.38 E-value=2e-06 Score=77.76 Aligned_cols=129 Identities=17% Similarity=0.144 Sum_probs=92.5
Q ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeee
Q 026557 51 NGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKF 130 (237)
Q Consensus 51 ~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kF 130 (237)
.|-+|+.. . ++.+++.++ ++.=-|+++.|+.. |..++++|.+.|..++..++.. .+. ...||
T Consensus 48 ~gri~V~~---~--~~~~~~~~L---------~~vfGI~~~s~v~~-~~~dle~I~~~~~~~~~~~~~~-~~~--~~~tF 109 (307)
T 1vbk_A 48 HGRIIVKT---N--SPKEAANVL---------VRVFGIVSISPAME-VEASLEKINRTALLMFRKKAKE-VGK--ERPKF 109 (307)
T ss_dssp TTEEEEEC---S--CHHHHHHHH---------TTSTTEEEEEEEEE-EECCHHHHHHHHHHHHHHHHHH-HTC--SSCEE
T ss_pred CCEEEEEc---C--CHHHHHHHH---------hhcCCeEEEEEEEE-eCCCHHHHHHHHHHHHHHhhcc-cCC--CCceE
Confidence 57788862 2 677655544 23456888899987 5689999999998888764321 010 11399
Q ss_pred EEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecC------------
Q 026557 131 AVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPIS------------ 198 (237)
Q Consensus 131 AI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~------------ 198 (237)
+|..+|++. +-.++.+++-..|++.|.... +.+|||+|||++|.|||....
T Consensus 110 ~Vr~kR~~k----------------~~~~~S~ei~r~vG~~i~~~~-~~~Vdl~~PD~~i~VEi~~~~~yv~~~~~~g~G 172 (307)
T 1vbk_A 110 RVTARRITK----------------EFPLDSLEIQAKVGEYILNNE-NCEVDLKNYDIEIGIEIMQGKAYIYTEKIKGWG 172 (307)
T ss_dssp EEEEEESSS----------------CSSSCHHHHHHHHHHHHHHHS-SCEECSSSCSEEEEEEEETTEEEEESCCEECCC
T ss_pred EEEEEeCCC----------------CCCCChHHHHHHHHHHHHHHh-CCceeeeCCCEEEEEEEEcCeEEEEEeccccCC
Confidence 999999981 346889999999999998654 689999999999999998752
Q ss_pred CCCCcccEEEEEeeCC
Q 026557 199 GLPSELLVVGVSILPQ 214 (237)
Q Consensus 199 g~~~~~~vcgvSVv~~ 214 (237)
|.|.|.+--.+..+.+
T Consensus 173 GlP~g~~~kvlvllSG 188 (307)
T 1vbk_A 173 GLPIGTEGRMIGILHD 188 (307)
T ss_dssp SBCTTTTCEEEEECSS
T ss_pred CCCcCCCCcEEEEEeC
Confidence 5566655333444444
No 4
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=96.41 E-value=0.0052 Score=54.98 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=81.9
Q ss_pred hHHHHHhhhhh-hccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeec
Q 026557 14 IEEDSAGGLQK-NECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIF 92 (237)
Q Consensus 14 ie~~i~~el~~-~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~ 92 (237)
.|+-++.||.+ +-.. . .+ -....|-+++.+.. ++..+ .+.|..+|+.
T Consensus 30 lE~~l~~El~~~lg~~-------~------~~--~~~~~g~v~~~~~~----~~~~~-------------~~lR~a~rvl 77 (354)
T 3tma_A 30 LEDLLLEELSALYPGE-------G------AE--VDARKGRVRIPRAW----VGEEA-------------LGLRLAHHLV 77 (354)
T ss_dssp CHHHHHHHHHHHSCSS-------C------CE--EETTTTEEEEECSC----CCGGG-------------GGCSSCSCEE
T ss_pred HHHHHHHHHHHHcCCc-------c------ce--eeecCCEEEEEecC----CHHHH-------------HhcCCccEEE
Confidence 68888999988 5321 0 11 11234667777632 22221 1266666666
Q ss_pred ccceee--e-cC-HHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHH
Q 026557 93 PIQATC--V-LK-EKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIV 168 (237)
Q Consensus 93 PI~~TC--~-A~-~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~V 168 (237)
-+-..+ . .+ .++|.+.+..+--..+ .+..+|+|..++.+ ...+...++-+.|
T Consensus 78 ~~~~~~~~~~~~~~~~L~~~~~~~~w~~~-------~~~~tF~V~~~~~~-----------------~~~f~s~~vk~~i 133 (354)
T 3tma_A 78 LFRARLLLSREDPLGALERAALALPWPEL-------EGAGSFRVEARREG-----------------EHPFTSPEVERRV 133 (354)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHTSCCTTH-------HHHCCEEEEEEEES-----------------CCSSCHHHHHHHH
T ss_pred EEeeeccCCchhhHHHHHHHHHhCchhhc-------CCCCCEEEEEEEcC-----------------CCCCCHHHHHHHH
Confidence 555555 3 36 7888877754321111 12348999999888 5678889999999
Q ss_pred HHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 026557 169 AAAVKEVVSDSAVDLKSPELSVLVELLP 196 (237)
Q Consensus 169 A~~V~~~~~~hkVDLknPd~~IlVEV~k 196 (237)
...+.... +.+|||++||+.|-|++.+
T Consensus 134 ~~~l~~~~-g~~v~~~~pd~~i~v~i~~ 160 (354)
T 3tma_A 134 GEALHRAY-GVPVDLKRPAVRVRVDVRG 160 (354)
T ss_dssp HHHHHHHH-CCCBCSSSCSEEEEEEEET
T ss_pred HHHHHHhh-CCcccCCCCCEEEEEEEEC
Confidence 98887532 4559999999999999986
No 5
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=95.80 E-value=0.022 Score=52.71 Aligned_cols=140 Identities=16% Similarity=0.095 Sum_probs=82.3
Q ss_pred CccccccccCChHHHHHhhhhhhccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCC
Q 026557 3 GKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSL 82 (237)
Q Consensus 3 ~~~~~~~~~~sie~~i~~el~~~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~ 82 (237)
+.|.-+ .|+-++.||.++-. -++.. +|-|++.. |...+ .+++--
T Consensus 19 at~~~G-----lE~~la~El~~lG~-----------------~v~~~-~g~V~f~g------~~~~~-~r~~l~------ 62 (393)
T 3k0b_A 19 ATAASG-----LEAIVGKEVARLGY-----------------DPKVE-NGKVYFEG------DLSAI-ARANLW------ 62 (393)
T ss_dssp EECCTT-----CHHHHHHHHHHTTC-----------------CCEEE-TTEEEEEE------CHHHH-HHHHHH------
T ss_pred EECCcc-----HHHHHHHHHHhCCC-----------------CcEEe-ccEEEEEE------CHHHH-HHHHhc------
Confidence 356655 68888999988621 11222 35566665 34333 333221
Q ss_pred CCCceeEeecccceeee-cCHHHHHHHHHHH-HHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCC
Q 026557 83 KSPVWCHRIFPIQATCV-LKEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLD 160 (237)
Q Consensus 83 k~tRfi~RL~PI~~TC~-A~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~ 160 (237)
+|-..|++-+-..+. .+.++|.+.+..+ ...||.. ..+|||..++++ +..+.
T Consensus 63 --~R~a~RVl~~l~~f~a~~~~~L~~~~~~i~w~~~l~~-------~~tF~V~~~~~~-----------------s~~fs 116 (393)
T 3k0b_A 63 --LRVADRVKIVVGVFKATTFDELFEKTKALPWEDYLPL-------DAQFPVAGKSVK-----------------STLYS 116 (393)
T ss_dssp --CSSCSCEEEEEEEEECSSHHHHHHHHHTSCGGGTCCT-------TCBCCEEEEEES-----------------SSCCC
T ss_pred --ccceeeEEEEEEEEecCCHHHHHHHHHhCCHHHhCCC-------CCeEEEEEEEec-----------------CCCCC
Confidence 233334443334443 4899999888775 4555642 348999987777 45555
Q ss_pred hHHHHH----HHHHHhhhc-CCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557 161 RNKCFT----IVAAAVKEV-VSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL 212 (237)
Q Consensus 161 R~~vI~----~VA~~V~~~-~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv 212 (237)
..++-. +|.+.+... ...-.||+++||+.|.|++.. ..|-+++=
T Consensus 117 s~~~~~~vkdAI~d~~~~~~~~rp~vd~~~Pd~~i~v~l~~--------~~~~~~ld 165 (393)
T 3k0b_A 117 VPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILK--------DEVTLTID 165 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCTTCCSCSSBCCEEEEEET--------TEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEEEC--------CEEEEEEe
Confidence 544433 333333332 122479999999999999986 56777765
No 6
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=95.65 E-value=0.16 Score=50.45 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=85.6
Q ss_pred CccccccccCChHHHHHhhhhhhccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCC
Q 026557 3 GKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSL 82 (237)
Q Consensus 3 ~~~~~~~~~~sie~~i~~el~~~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~ 82 (237)
+.|.-+ +|+-++.||.+|-. ..++..- |-|++.. |...+ .+++-
T Consensus 7 a~~~~G-----lE~~l~~El~~lg~----------------~~~~~~~-g~V~f~g------~~~~~-~~~~l------- 50 (703)
T 3v97_A 7 ASTARG-----LEELLKTELENLGA----------------VECQVVQ-GGVHFKG------DTRLV-YQSLM------- 50 (703)
T ss_dssp EECCTT-----CHHHHHHHHHHTTC----------------EEEEEET-TEEEEEE------CHHHH-HHHHH-------
T ss_pred EECCCc-----HHHHHHHHHHhcCC----------------cccEEEC-CEEEEEe------CHHHH-HHHHH-------
Confidence 356655 68888999998632 2233333 4455554 34433 33322
Q ss_pred CCCceeEeecccceeee-cCHHHHHHHHHHH-HHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCC
Q 026557 83 KSPVWCHRIFPIQATCV-LKEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLD 160 (237)
Q Consensus 83 k~tRfi~RL~PI~~TC~-A~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~ 160 (237)
-+|-..|++=.-..+. .+.++|-+.++.+ ...||.. ..+|+|.++.+++. -.|+...
T Consensus 51 -~~R~a~Rvl~~l~~f~~~~~~~L~~~~~~~~w~~~~~~-------~~tf~V~~~~~~~~-------------~~~~~~~ 109 (703)
T 3v97_A 51 -WSRLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFNP-------GATFAVHFSGLNDT-------------IRNSQYG 109 (703)
T ss_dssp -HCSSCSEEEEEEEEEECSSHHHHHHHHHTSCHHHHBCT-------TCCEEEEEECCCSS-------------CCSHHHH
T ss_pred -hhCceeEEEEEEEEEecCCHHHHHHHHHcCCHHHhCCC-------CceEEEEEEEecCC-------------cCChHHH
Confidence 1333344444444453 4889998888775 5566653 34899999877610 0012222
Q ss_pred hHHHHHHHHHHhhhcC-CCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557 161 RNKCFTIVAAAVKEVV-SDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL 212 (237)
Q Consensus 161 R~~vI~~VA~~V~~~~-~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv 212 (237)
-..+-++|...++... ..-.||+++||+.|.|.+.+ ..|-+|+=
T Consensus 110 ~~~vk~ai~d~~~~~~g~rp~v~~~~pd~~i~v~l~~--------~~~~l~ld 154 (703)
T 3v97_A 110 AMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHK--------ETASIALD 154 (703)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCBCSSSCSEEEEEEEET--------TEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEEEC--------CEEEEEEe
Confidence 2344556666655432 22469999999999999986 67888874
No 7
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=95.32 E-value=0.18 Score=46.26 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=81.2
Q ss_pred ccccccccCChHHHHHhhhhhhccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCC
Q 026557 4 KCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLK 83 (237)
Q Consensus 4 ~~~~~~~~~sie~~i~~el~~~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k 83 (237)
.|.-+ +|+-++.||.+|-. ..++.. .|-|++.. |...+ .+++--
T Consensus 12 t~~~G-----lE~~l~~El~~Lg~----------------~~~~~~-~g~V~f~g------~~~~~-~~~~l~------- 55 (385)
T 3ldu_A 12 PCFFG-----MEKMLAREITNLGY----------------EIIKTE-DGRITYKT------DEFGI-AKSNMW------- 55 (385)
T ss_dssp ECCTT-----CHHHHHHHHHHTTC----------------EEEEEE-TTEEEEEE------CTTHH-HHHHHH-------
T ss_pred ECChh-----HHHHHHHHHHhcCC----------------CceEEe-ccEEEEEE------CHHHH-HHHHhc-------
Confidence 45555 68889999998632 223333 34456664 22222 333221
Q ss_pred CCceeEeecccceee-ecCHHHHHHHHHHH-HHhhcccccccCCCCeeeEEE-eeccCchhhccCCCCCCCCCccccCCC
Q 026557 84 SPVWCHRIFPIQATC-VLKEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVG-YNRRGFEEKQNKIPKDTKDSDVSALLD 160 (237)
Q Consensus 84 ~tRfi~RL~PI~~TC-~A~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI~-~~~Rn~e~~~~~~~~~~~~~~~n~~L~ 160 (237)
+|-..|++=+-..+ ..+.++|.+.+..+ ...||.. ..+|+|. .++++ +..+.
T Consensus 56 -~R~a~RVl~~l~~f~~~~~~~L~~~~~~i~w~~~~~~-------~~tf~V~~~~~~~-----------------s~~~~ 110 (385)
T 3ldu_A 56 -LRCAERVHLKIAEFEAKSFDELFENTKRINWSRYIPY-------GAQFPISKASSIK-----------------SKLYS 110 (385)
T ss_dssp -CSSCSCCEEEEEEEECSSHHHHHHHHHTSCGGGTSCT-------TCBCCEEEEEEES-----------------SSCCC
T ss_pred -cCceeEEEEEeeeEecCCHHHHHHHHHhCCHHHhCCC-------CceEEEEeecccC-----------------CCcCc
Confidence 23333333323344 34899998888765 4556643 3489999 77777 44455
Q ss_pred hHHHHH----HHHHHhhhc-CCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557 161 RNKCFT----IVAAAVKEV-VSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL 212 (237)
Q Consensus 161 R~~vI~----~VA~~V~~~-~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv 212 (237)
..++-. +|++.+... ...-.||+++||+.|.|.+.+ ..|-+++=
T Consensus 111 ~~~~~~~vkdAIvd~~~~~~~~rp~v~~~~p~~~i~~~i~~--------~~~~~~lD 159 (385)
T 3ldu_A 111 TPDVQAIVKKAIVESLKKSYLEDGLLKEDKEKYPIFVFIHK--------DKVTISID 159 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCCCCSCBCCEEEEEET--------TEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEEEC--------CEEEEEEe
Confidence 433333 333333332 122479999999999999986 56777765
No 8
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=94.98 E-value=0.022 Score=52.63 Aligned_cols=140 Identities=19% Similarity=0.118 Sum_probs=81.9
Q ss_pred CccccccccCChHHHHHhhhhhhccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCC
Q 026557 3 GKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSL 82 (237)
Q Consensus 3 ~~~~~~~~~~sie~~i~~el~~~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~ 82 (237)
+.|.-+ +|+-+++||.++-. -++.. +|-|++.. |...+ .+++-
T Consensus 9 a~~~~G-----lE~~la~El~~lG~-----------------~~~~~-~g~V~f~g------d~~~~-~~~~l------- 51 (384)
T 3ldg_A 9 ATAAAG-----IEAVVGKELRNLGL-----------------DCQVE-NGRVLFKG------NIETI-AKSNL------- 51 (384)
T ss_dssp EECCTT-----CHHHHHHHHHHTTC-----------------CCEEE-TTEEEEEE------CHHHH-HHHHH-------
T ss_pred EECChh-----HHHHHHHHHHhCCC-----------------CcEEe-eeEEEEEE------CHHHH-HHHHh-------
Confidence 345555 68888899988621 01111 35566665 34333 33322
Q ss_pred CCCceeEeecccceeeec-CHHHHHHHHHHH-HHhhcccccccCCCCeeeEE-EeeccCchhhccCCCCCCCCCccccCC
Q 026557 83 KSPVWCHRIFPIQATCVL-KEKELQATVSKL-VLQFVNDEQNKLSRPVKFAV-GYNRRGFEEKQNKIPKDTKDSDVSALL 159 (237)
Q Consensus 83 k~tRfi~RL~PI~~TC~A-~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI-~~~~Rn~e~~~~~~~~~~~~~~~n~~L 159 (237)
-+|-..|++-+-..+.+ +.++|.+.+..+ ...||.. ..+|+| ..++.+ +..+
T Consensus 52 -~~R~a~RVl~~l~~f~a~~~~~Ly~~~~~i~W~~~l~~-------~~tf~V~~~~~~~-----------------s~~~ 106 (384)
T 3ldg_A 52 -WLRSADRIKIVVGEFPARTFEELFQGVYALDWENYLPL-------GCQFPVAKAKSVK-----------------SKLH 106 (384)
T ss_dssp -HCSSCSEEEEEEEEEECSSHHHHHHHHHHSCGGGTCCT-------TCBCCBCCCEEES-----------------CSCC
T ss_pred -hcccceeEEEEEEEEecCCHHHHHHHHHcCCHHHhCCC-------CCeEEEEeeeecC-----------------CCCC
Confidence 13444455444445544 899999888775 4566643 348999 766666 3334
Q ss_pred ChHHH----HHHHHHHhhhcC-CCCe--eeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557 160 DRNKC----FTIVAAAVKEVV-SDSA--VDLKSPELSVLVELLPISGLPSELLVVGVSIL 212 (237)
Q Consensus 160 ~R~~v----I~~VA~~V~~~~-~~hk--VDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv 212 (237)
...++ =++|.+.+.... ..-. ||+++||+.|.|.+.+ ..|-+|+=
T Consensus 107 ~s~~~~~~vkdAi~d~~~~~~~~r~~~~v~~~~pd~~i~v~~~~--------~~~~~~ld 158 (384)
T 3ldg_A 107 NEPSIQGITKKAIVKKLQHYFHRPDSVPLPENGPEFKIEISLLK--------DQARVMID 158 (384)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCTTSCCCCCSCBCEEEEEEET--------TEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhhCCCCccccCCCCCCEEEEEEEEC--------CEEEEEEe
Confidence 43333 234444444321 1123 9999999999999986 56778775
No 9
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=94.43 E-value=0.19 Score=45.55 Aligned_cols=147 Identities=22% Similarity=0.186 Sum_probs=84.7
Q ss_pred hHHHHHhhhhhhccccCccccCCCCcccCce--eeecCCCeEEEEEeCCCCCCC-------hHHHHHHHHHHhhcCCCCC
Q 026557 14 IEEDSAGGLQKNECHSSVKTDTNTETDFDMS--LVKLTRNGLLLLTFPREHSPN-------TINIVSNIFQSLGSGSLKS 84 (237)
Q Consensus 14 ie~~i~~el~~~~~~~~~~~~~~~~~~~~f~--~Vkl~~~g~vFi~t~~~~~~d-------P~~lV~~I~~D~~~~~~k~ 84 (237)
+|+-.+.||.++-.+ .+ -.|+ .+..+.+|-|++...... .. ..+.+.+++- .
T Consensus 11 lE~~l~~El~~lg~~------~~----~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~ 71 (373)
T 3tm4_A 11 IEDIAKREVSLLLKK------LG----ISFQIEEKPLGIEGRLLLEAEKAY-YVDEKGRKRELSISTYLNE--------N 71 (373)
T ss_dssp CHHHHHHHHHHHHHT------TT----CCEEEEESGGGCTTEEEEEECCEE-EECTTSCEEEECHHHHHHH--------H
T ss_pred hHHHHHHHHHHhhcc------cc----ccccceeccccccceEEEEEeccc-ccccccccCCHHHHHHHHH--------h
Confidence 688889999987531 00 1122 233435677777762100 00 1122333333 3
Q ss_pred CceeEeecccceeeec----------CHHHHHHHHHHH-HHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCC
Q 026557 85 PVWCHRIFPIQATCVL----------KEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDS 153 (237)
Q Consensus 85 tRfi~RL~PI~~TC~A----------~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~ 153 (237)
+|..+|++-+-..+.+ +.++|.+.+..+ ...||. +..+|+|..++.+
T Consensus 72 ~R~a~rv~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~w~~~l~-------~~~tF~V~~~~~~--------------- 129 (373)
T 3tm4_A 72 SRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVK-------VSETFAVRSFRKG--------------- 129 (373)
T ss_dssp CSSCSEEEEEEEEEECTTTTTSCHHHHHHHHHHHHHTSCGGGGSC-------TTSEEEEEEEEES---------------
T ss_pred hhhHhheEEEEEEeEeccccccccCCCHHHHHHHHHhCCHHHhCC-------CCCcEEEEEEECC---------------
Confidence 5666677666555544 466676665542 222333 3349999998887
Q ss_pred ccccCCChHHHHHHHHHHhh----hcCCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557 154 DVSALLDRNKCFTIVAAAVK----EVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL 212 (237)
Q Consensus 154 ~~n~~L~R~~vI~~VA~~V~----~~~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv 212 (237)
...+...++-..|-.+|. .... ..||+++||+.|-+.+.. ..|-+++=
T Consensus 130 --~~~~~s~~~~~~vk~aIvd~~~~~g~-~~v~~~~p~~~i~~~~~~--------d~~~~~ld 181 (373)
T 3tm4_A 130 --DHNITSIDIARTVGEAIFERLSRFGT-PLVNLDHPAVIFRAELIK--------DVFFLGID 181 (373)
T ss_dssp --SCSSCHHHHHHHHHHHHHHHHHTTSC-CEECSSSCSEEEEEEEET--------TEEEEEEE
T ss_pred --CCcCCHHHHHHHHHHHHHHHHHHhCC-CcccCCCCCeEEEEEEEC--------CEEEEEEE
Confidence 445565555555544443 2122 589999999999999985 45666664
No 10
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=27.28 E-value=24 Score=20.78 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=13.9
Q ss_pred CCeeeCCCCCeEEEEEE
Q 026557 178 DSAVDLKSPELSVLVEL 194 (237)
Q Consensus 178 ~hkVDLknPd~~IlVEV 194 (237)
++.-||+-||++|-=|-
T Consensus 4 ~~~kDlkppdlwihhe~ 20 (27)
T 3o71_B 4 GSQKDLRPPDLWIHHEE 20 (27)
T ss_pred CccCCCCCcceeeehhh
Confidence 57889999999997553
No 11
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=20.13 E-value=97 Score=27.17 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccC
Q 026557 103 KELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRG 138 (237)
Q Consensus 103 ~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn 138 (237)
+++++.+..+....-+.. .--..+|+.|..|.
T Consensus 125 ~~~~~~i~~ae~~T~~n~----~~~lnia~~YggR~ 156 (256)
T 4h8e_A 125 KSTIEAINNAKEKTANNT----GLKLIFAINYGGRA 156 (256)
T ss_dssp HHHHHHHHHHHHHTTTCC----SCEEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCC----CeEEEEEeCCCCHH
Confidence 556666666666543321 23568999997777
Done!