Query 026558
Match_columns 237
No_of_seqs 183 out of 3072
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 09:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 1E-20 2.2E-25 150.7 13.1 118 37-162 40-161 (238)
2 PF01209 Ubie_methyltran: ubiE 99.8 1.7E-20 3.6E-25 150.6 10.2 107 49-163 49-159 (233)
3 TIGR03840 TMPT_Se_Te thiopurin 99.8 2.8E-19 6.1E-24 141.8 14.8 140 14-159 1-154 (213)
4 KOG1271 Methyltransferases [Ge 99.8 2.6E-19 5.7E-24 133.8 11.0 155 5-160 10-184 (227)
5 PF08241 Methyltransf_11: Meth 99.8 3.3E-19 7.2E-24 123.3 10.1 95 52-155 1-95 (95)
6 PRK13255 thiopurine S-methyltr 99.8 2.2E-18 4.8E-23 137.1 15.0 139 13-157 3-155 (218)
7 PRK11207 tellurite resistance 99.8 7.1E-18 1.5E-22 132.6 15.7 129 11-157 4-134 (197)
8 PLN02233 ubiquinone biosynthes 99.8 4.6E-18 9.9E-23 139.3 13.7 106 49-162 75-187 (261)
9 PF12847 Methyltransf_18: Meth 99.8 5.4E-18 1.2E-22 121.2 12.0 103 49-157 3-111 (112)
10 PRK11036 putative S-adenosyl-L 99.8 1.8E-18 4E-23 141.4 9.6 135 17-160 15-152 (255)
11 PRK13256 thiopurine S-methyltr 99.8 2.6E-17 5.6E-22 130.6 15.5 144 9-158 5-164 (226)
12 PTZ00098 phosphoethanolamine N 99.8 1.4E-17 2.9E-22 136.6 14.4 118 36-159 41-158 (263)
13 PLN02244 tocopherol O-methyltr 99.8 8.5E-18 1.9E-22 142.6 13.6 102 49-158 120-224 (340)
14 COG2227 UbiG 2-polyprenyl-3-me 99.8 3.5E-18 7.6E-23 134.2 9.3 103 49-160 61-164 (243)
15 PF05724 TPMT: Thiopurine S-me 99.7 1.3E-17 2.9E-22 132.4 10.4 139 13-157 3-155 (218)
16 PLN02396 hexaprenyldihydroxybe 99.7 1.7E-17 3.6E-22 138.9 10.8 103 49-160 133-238 (322)
17 TIGR00477 tehB tellurite resis 99.7 1.1E-16 2.4E-21 125.6 14.6 101 49-157 32-133 (195)
18 PRK10258 biotin biosynthesis p 99.7 4.5E-17 9.7E-22 132.9 12.8 100 49-160 44-143 (251)
19 COG2230 Cfa Cyclopropane fatty 99.7 1.9E-17 4.1E-22 134.3 10.2 108 46-162 71-181 (283)
20 PRK14103 trans-aconitate 2-met 99.7 4.4E-17 9.6E-22 133.2 12.0 109 36-158 18-127 (255)
21 PF05401 NodS: Nodulation prot 99.7 2.6E-17 5.6E-22 126.0 9.7 140 11-158 4-147 (201)
22 PF13847 Methyltransf_31: Meth 99.7 6.4E-17 1.4E-21 122.1 11.6 103 49-159 5-112 (152)
23 PF03848 TehB: Tellurite resis 99.7 9E-17 2E-21 124.2 12.2 129 12-158 5-134 (192)
24 COG4106 Tam Trans-aconitate me 99.7 2.9E-17 6.3E-22 126.3 9.3 114 33-158 16-130 (257)
25 PF13649 Methyltransf_25: Meth 99.7 3.7E-17 8E-22 114.9 8.6 95 51-151 1-101 (101)
26 TIGR02752 MenG_heptapren 2-hep 99.7 2.3E-16 5E-21 127.1 13.7 105 49-161 47-155 (231)
27 TIGR03587 Pse_Me-ase pseudamin 99.7 1.2E-16 2.7E-21 126.0 11.5 100 49-160 45-145 (204)
28 PRK01683 trans-aconitate 2-met 99.7 2.1E-16 4.4E-21 129.5 12.7 110 36-157 20-130 (258)
29 PRK15451 tRNA cmo(5)U34 methyl 99.7 2.4E-16 5.2E-21 128.2 12.8 178 42-231 52-245 (247)
30 PLN02336 phosphoethanolamine N 99.7 2.9E-16 6.3E-21 139.3 13.7 114 37-158 256-370 (475)
31 PF07021 MetW: Methionine bios 99.7 5.8E-17 1.2E-21 123.8 7.5 106 38-160 5-111 (193)
32 PRK12335 tellurite resistance 99.7 6.3E-16 1.4E-20 128.5 14.3 101 49-157 122-223 (287)
33 PRK00107 gidB 16S rRNA methylt 99.7 2E-15 4.4E-20 117.2 16.1 121 44-178 43-166 (187)
34 KOG1540 Ubiquinone biosynthesi 99.7 6.2E-16 1.3E-20 121.8 12.4 124 37-168 89-226 (296)
35 PRK15068 tRNA mo(5)U34 methylt 99.7 6.4E-16 1.4E-20 130.0 13.4 101 49-158 124-227 (322)
36 PF13489 Methyltransf_23: Meth 99.7 4E-16 8.6E-21 118.4 10.7 110 34-160 7-118 (161)
37 PF02353 CMAS: Mycolic acid cy 99.7 3.6E-16 7.8E-21 128.3 11.1 104 49-161 64-170 (273)
38 TIGR00740 methyltransferase, p 99.7 1.1E-15 2.3E-20 123.9 13.4 105 45-158 52-162 (239)
39 TIGR00452 methyltransferase, p 99.7 7.9E-16 1.7E-20 128.3 13.0 101 49-158 123-226 (314)
40 PRK05785 hypothetical protein; 99.7 7.2E-16 1.6E-20 123.7 11.7 88 49-150 53-140 (226)
41 TIGR02072 BioC biotin biosynth 99.7 1.2E-15 2.6E-20 123.1 12.8 102 49-160 36-138 (240)
42 TIGR00138 gidB 16S rRNA methyl 99.7 1.6E-15 3.5E-20 117.4 12.7 117 49-178 44-164 (181)
43 KOG1270 Methyltransferases [Co 99.7 1.8E-16 3.9E-21 125.5 7.0 100 49-160 91-198 (282)
44 PRK00216 ubiE ubiquinone/menaq 99.6 2.8E-15 6E-20 121.1 12.2 104 49-160 53-161 (239)
45 KOG1541 Predicted protein carb 99.6 2.9E-15 6.3E-20 115.6 11.5 161 3-167 1-170 (270)
46 PF08242 Methyltransf_12: Meth 99.6 7.4E-17 1.6E-21 112.9 2.1 95 52-153 1-99 (99)
47 PRK11705 cyclopropane fatty ac 99.6 7E-15 1.5E-19 126.4 14.0 102 49-160 169-270 (383)
48 PRK11873 arsM arsenite S-adeno 99.6 6.8E-15 1.5E-19 121.4 11.9 102 49-158 79-184 (272)
49 smart00138 MeTrc Methyltransfe 99.6 8.2E-15 1.8E-19 120.1 11.7 103 49-157 101-242 (264)
50 KOG4300 Predicted methyltransf 99.6 5.7E-15 1.2E-19 112.9 9.8 106 49-161 78-186 (252)
51 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2.1E-14 4.5E-19 114.8 13.7 107 47-161 39-147 (223)
52 TIGR00537 hemK_rel_arch HemK-r 99.6 3.8E-14 8.3E-19 109.8 14.7 108 49-160 21-143 (179)
53 PRK08287 cobalt-precorrin-6Y C 99.6 4.2E-14 9.1E-19 110.4 15.0 96 49-157 33-131 (187)
54 PRK08317 hypothetical protein; 99.6 1.8E-14 3.9E-19 116.2 13.3 102 49-158 21-125 (241)
55 PLN02490 MPBQ/MSBQ methyltrans 99.6 8.9E-15 1.9E-19 123.0 11.7 101 49-158 115-216 (340)
56 PF05175 MTS: Methyltransferas 99.6 1.9E-14 4E-19 110.6 12.5 106 49-158 33-141 (170)
57 TIGR02469 CbiT precorrin-6Y C5 99.6 3.3E-14 7.1E-19 103.1 13.1 99 49-157 21-122 (124)
58 PRK09489 rsmC 16S ribosomal RN 99.6 6.1E-14 1.3E-18 118.7 16.4 105 49-158 198-304 (342)
59 smart00828 PKS_MT Methyltransf 99.6 7.8E-15 1.7E-19 117.6 10.4 100 50-158 2-105 (224)
60 KOG2352 Predicted spermine/spe 99.6 1.4E-14 3.1E-19 124.1 12.1 217 4-230 4-228 (482)
61 PRK11088 rrmA 23S rRNA methylt 99.6 1.5E-14 3.2E-19 119.4 11.9 104 39-160 77-184 (272)
62 PLN02336 phosphoethanolamine N 99.6 1.9E-14 4.2E-19 127.7 12.9 102 49-157 39-142 (475)
63 PLN03075 nicotianamine synthas 99.6 1.2E-13 2.6E-18 113.5 16.3 105 47-158 123-234 (296)
64 PRK06922 hypothetical protein; 99.6 1.1E-14 2.3E-19 130.0 10.9 110 49-158 420-538 (677)
65 PF13659 Methyltransf_26: Meth 99.6 1.7E-14 3.6E-19 103.8 9.9 108 50-157 3-115 (117)
66 PRK00121 trmB tRNA (guanine-N( 99.6 2.5E-14 5.4E-19 112.9 10.9 112 49-160 42-159 (202)
67 PRK14966 unknown domain/N5-glu 99.6 5.6E-14 1.2E-18 120.2 12.8 145 11-159 216-383 (423)
68 PRK15001 SAM-dependent 23S rib 99.6 4.7E-14 1E-18 120.3 12.2 117 37-157 217-340 (378)
69 PRK06202 hypothetical protein; 99.6 1.1E-13 2.5E-18 111.5 13.7 104 49-161 62-170 (232)
70 PRK04266 fibrillarin; Provisio 99.5 7.1E-13 1.5E-17 106.0 17.2 99 49-157 74-176 (226)
71 TIGR03533 L3_gln_methyl protei 99.5 1.4E-13 2.9E-18 114.1 12.7 109 49-159 123-253 (284)
72 TIGR03534 RF_mod_PrmC protein- 99.5 1.2E-13 2.5E-18 112.6 12.2 108 49-158 89-218 (251)
73 PRK13944 protein-L-isoaspartat 99.5 2.5E-13 5.4E-18 107.5 13.1 95 49-157 74-173 (205)
74 TIGR00091 tRNA (guanine-N(7)-) 99.5 9.5E-14 2E-18 109.0 10.7 112 49-161 18-136 (194)
75 TIGR02021 BchM-ChlM magnesium 99.5 2.5E-13 5.3E-18 108.6 12.5 97 49-155 57-156 (219)
76 PRK14967 putative methyltransf 99.5 1.9E-13 4E-18 109.6 11.6 108 49-158 38-160 (223)
77 TIGR00080 pimt protein-L-isoas 99.5 3.8E-13 8.2E-18 107.3 13.1 106 38-157 68-177 (215)
78 PRK13942 protein-L-isoaspartat 99.5 4.3E-13 9.3E-18 106.6 13.2 105 39-157 68-176 (212)
79 TIGR00406 prmA ribosomal prote 99.5 2.1E-13 4.7E-18 113.3 11.9 105 41-159 154-261 (288)
80 KOG2361 Predicted methyltransf 99.5 1.5E-13 3.3E-18 107.6 10.0 144 12-162 35-188 (264)
81 PRK00377 cbiT cobalt-precorrin 99.5 8.2E-13 1.8E-17 104.0 14.2 99 49-157 42-145 (198)
82 TIGR03704 PrmC_rel_meth putati 99.5 3E-13 6.6E-18 110.1 11.9 110 50-160 89-219 (251)
83 PRK09328 N5-glutamine S-adenos 99.5 3.8E-13 8.2E-18 111.1 12.5 108 49-158 110-239 (275)
84 PRK11805 N5-glutamine S-adenos 99.5 3.3E-13 7.1E-18 112.9 12.1 110 49-160 135-266 (307)
85 PF08003 Methyltransf_9: Prote 99.5 4.6E-13 9.9E-18 109.1 12.4 113 37-158 105-220 (315)
86 TIGR00536 hemK_fam HemK family 99.5 4.7E-13 1E-17 111.1 12.8 110 49-160 116-247 (284)
87 COG2264 PrmA Ribosomal protein 99.5 1.6E-13 3.5E-18 112.4 9.7 109 37-158 153-264 (300)
88 COG2813 RsmC 16S RNA G1207 met 99.5 2E-12 4.2E-17 105.5 15.5 151 5-161 109-270 (300)
89 COG4123 Predicted O-methyltran 99.5 4.6E-13 1E-17 107.0 11.7 119 39-157 35-170 (248)
90 KOG1975 mRNA cap methyltransfe 99.5 3.8E-13 8.2E-18 109.4 11.3 170 39-214 110-295 (389)
91 PRK05134 bifunctional 3-demeth 99.5 5.6E-13 1.2E-17 107.5 12.3 103 49-159 50-153 (233)
92 TIGR02081 metW methionine bios 99.5 3.2E-13 7E-18 106.0 10.4 94 43-149 10-104 (194)
93 COG2242 CobL Precorrin-6B meth 99.5 3E-12 6.6E-17 97.4 15.1 104 45-160 32-138 (187)
94 PRK00312 pcm protein-L-isoaspa 99.5 1.1E-12 2.4E-17 104.4 13.3 134 10-158 38-176 (212)
95 TIGR03438 probable methyltrans 99.5 6.1E-13 1.3E-17 111.2 12.3 108 44-157 61-177 (301)
96 PRK14121 tRNA (guanine-N(7)-)- 99.5 7.7E-13 1.7E-17 112.5 13.0 124 37-161 112-239 (390)
97 TIGR01177 conserved hypothetic 99.5 1.2E-12 2.6E-17 110.8 14.2 110 49-160 184-297 (329)
98 PLN02585 magnesium protoporphy 99.5 7.7E-13 1.7E-17 110.6 12.1 95 49-154 146-247 (315)
99 PRK00811 spermidine synthase; 99.5 7.7E-13 1.7E-17 109.6 11.8 111 44-157 73-191 (283)
100 TIGR01983 UbiG ubiquinone bios 99.5 7E-13 1.5E-17 106.2 11.1 103 49-159 47-151 (224)
101 PRK01544 bifunctional N5-gluta 99.5 8.3E-13 1.8E-17 117.4 12.3 108 49-158 140-270 (506)
102 smart00650 rADc Ribosomal RNA 99.5 2.1E-12 4.5E-17 99.2 12.9 110 38-157 4-113 (169)
103 TIGR02716 C20_methyl_CrtF C-20 99.5 1.5E-12 3.2E-17 109.3 13.1 101 49-158 151-255 (306)
104 PRK11188 rrmJ 23S rRNA methylt 99.4 1.9E-12 4.2E-17 102.6 13.0 102 49-161 53-169 (209)
105 PRK00517 prmA ribosomal protei 99.4 1.1E-12 2.4E-17 106.9 11.7 98 45-159 118-215 (250)
106 PF06325 PrmA: Ribosomal prote 99.4 3.6E-13 7.8E-18 111.2 8.7 108 37-158 152-260 (295)
107 COG3963 Phospholipid N-methylt 99.4 8E-12 1.7E-16 92.7 14.8 117 36-160 36-159 (194)
108 cd02440 AdoMet_MTases S-adenos 99.4 2.5E-12 5.5E-17 89.2 11.7 100 50-156 1-103 (107)
109 COG2890 HemK Methylase of poly 99.4 1.4E-12 3E-17 107.6 11.8 140 13-158 76-239 (280)
110 PRK14968 putative methyltransf 99.4 3.8E-12 8.2E-17 99.1 13.7 107 49-158 25-149 (188)
111 PF03291 Pox_MCEL: mRNA cappin 99.4 9.2E-13 2E-17 110.8 10.8 110 49-161 64-190 (331)
112 PRK11783 rlmL 23S rRNA m(2)G24 99.4 2.7E-12 5.8E-17 118.5 14.8 122 37-160 530-659 (702)
113 PRK07580 Mg-protoporphyrin IX 99.4 3.2E-12 6.9E-17 102.8 12.8 94 49-152 65-161 (230)
114 PRK07402 precorrin-6B methylas 99.4 3.9E-12 8.4E-17 100.0 12.4 114 36-160 28-145 (196)
115 PTZ00146 fibrillarin; Provisio 99.4 2.5E-11 5.5E-16 99.5 16.4 99 49-156 134-236 (293)
116 PHA03411 putative methyltransf 99.4 1.2E-11 2.7E-16 100.3 14.2 108 49-161 66-187 (279)
117 PHA03412 putative methyltransf 99.4 1E-11 2.2E-16 98.6 12.5 99 49-152 51-158 (241)
118 COG2518 Pcm Protein-L-isoaspar 99.4 2E-11 4.2E-16 95.0 12.8 109 35-158 60-170 (209)
119 PRK14903 16S rRNA methyltransf 99.4 1.5E-11 3.3E-16 107.5 13.4 112 49-160 239-369 (431)
120 PRK04457 spermidine synthase; 99.3 1.4E-11 3.1E-16 100.9 12.2 110 48-160 67-180 (262)
121 KOG3010 Methyltransferase [Gen 99.3 3.8E-12 8.2E-17 99.9 8.1 100 50-159 36-139 (261)
122 PRK10901 16S rRNA methyltransf 99.3 2.3E-11 4.9E-16 106.5 13.5 110 49-158 246-373 (427)
123 TIGR00438 rrmJ cell division p 99.3 9.1E-12 2E-16 97.2 9.9 103 49-160 34-149 (188)
124 PLN02232 ubiquinone biosynthes 99.3 4.4E-12 9.6E-17 96.4 7.7 81 74-162 1-86 (160)
125 TIGR00417 speE spermidine synt 99.3 1.5E-11 3.2E-16 101.4 11.0 111 44-157 69-186 (270)
126 TIGR00446 nop2p NOL1/NOP2/sun 99.3 4.1E-11 8.8E-16 98.4 13.3 111 49-160 73-202 (264)
127 PRK13943 protein-L-isoaspartat 99.3 4.1E-11 8.9E-16 100.5 12.5 95 49-157 82-180 (322)
128 PRK01581 speE spermidine synth 99.3 2.9E-11 6.3E-16 101.7 11.5 111 46-158 149-269 (374)
129 PLN02672 methionine S-methyltr 99.3 2.2E-11 4.7E-16 115.2 11.8 157 10-166 79-287 (1082)
130 PRK10909 rsmD 16S rRNA m(2)G96 99.3 3.6E-11 7.7E-16 94.3 11.1 103 49-159 55-161 (199)
131 PRK14904 16S rRNA methyltransf 99.3 6.4E-11 1.4E-15 104.2 13.7 110 49-160 252-380 (445)
132 PRK14902 16S rRNA methyltransf 99.3 7.7E-11 1.7E-15 103.8 13.7 111 49-159 252-381 (444)
133 PLN02366 spermidine synthase 99.3 4.9E-11 1.1E-15 99.5 11.8 109 46-157 90-206 (308)
134 PRK14901 16S rRNA methyltransf 99.3 5.9E-11 1.3E-15 104.1 12.8 111 49-159 254-386 (434)
135 COG4976 Predicted methyltransf 99.3 2.1E-12 4.5E-17 100.5 2.7 112 36-158 114-226 (287)
136 PF01135 PCMT: Protein-L-isoas 99.3 2.4E-11 5.3E-16 95.9 8.6 109 36-158 61-173 (209)
137 TIGR00563 rsmB ribosomal RNA s 99.3 8.7E-11 1.9E-15 102.8 12.8 112 49-160 240-371 (426)
138 PRK15128 23S rRNA m(5)C1962 me 99.2 8.8E-11 1.9E-15 101.3 12.1 119 37-159 212-341 (396)
139 KOG2899 Predicted methyltransf 99.2 6.4E-11 1.4E-15 93.0 10.1 107 50-157 61-209 (288)
140 COG1041 Predicted DNA modifica 99.2 3.7E-10 8.1E-15 94.0 14.6 121 36-158 185-311 (347)
141 PF00891 Methyltransf_2: O-met 99.2 1.7E-10 3.7E-15 93.5 11.7 96 49-158 102-200 (241)
142 PRK03612 spermidine synthase; 99.2 1.2E-10 2.6E-15 104.2 11.3 110 46-157 296-415 (521)
143 PF05219 DREV: DREV methyltran 99.2 1.2E-10 2.5E-15 93.2 9.9 93 49-157 96-188 (265)
144 PLN02781 Probable caffeoyl-CoA 99.2 1E-10 2.2E-15 94.3 9.2 98 49-156 70-177 (234)
145 PRK13168 rumA 23S rRNA m(5)U19 99.2 4.4E-10 9.5E-15 98.9 13.9 98 49-158 299-401 (443)
146 PF05891 Methyltransf_PK: AdoM 99.2 2.6E-10 5.7E-15 89.1 10.3 103 49-157 57-161 (218)
147 COG2263 Predicted RNA methylas 99.2 5.5E-10 1.2E-14 85.0 11.5 73 50-126 48-121 (198)
148 PRK03522 rumB 23S rRNA methylu 99.1 1.3E-09 2.8E-14 91.9 14.0 99 49-158 175-275 (315)
149 PF02390 Methyltransf_4: Putat 99.1 2.7E-10 5.9E-15 89.2 9.2 111 50-161 20-137 (195)
150 COG1092 Predicted SAM-dependen 99.1 2.5E-10 5.4E-15 97.6 9.5 124 36-161 208-340 (393)
151 KOG3191 Predicted N6-DNA-methy 99.1 1.4E-09 3.1E-14 81.9 11.9 143 13-160 12-171 (209)
152 PLN02823 spermine synthase 99.1 9E-10 2E-14 92.9 11.7 112 45-157 101-220 (336)
153 PF05148 Methyltransf_8: Hypot 99.1 1.6E-09 3.4E-14 84.0 11.9 105 32-160 56-161 (219)
154 PF01739 CheR: CheR methyltran 99.1 3.9E-10 8.5E-15 88.1 8.4 102 50-157 34-175 (196)
155 PRK10611 chemotaxis methyltran 99.1 1.2E-09 2.6E-14 90.1 11.4 103 50-157 118-262 (287)
156 PRK14896 ksgA 16S ribosomal RN 99.1 2E-09 4.4E-14 88.1 12.3 72 49-124 31-102 (258)
157 PF06080 DUF938: Protein of un 99.1 1.1E-09 2.3E-14 85.2 9.9 119 33-156 11-140 (204)
158 COG4122 Predicted O-methyltran 99.1 1.1E-09 2.4E-14 86.4 10.1 112 35-156 46-165 (219)
159 PRK00274 ksgA 16S ribosomal RN 99.1 2.6E-09 5.7E-14 88.1 12.3 73 49-124 44-116 (272)
160 TIGR00755 ksgA dimethyladenosi 99.0 3.4E-09 7.4E-14 86.6 12.1 84 37-124 19-105 (253)
161 PLN02476 O-methyltransferase 99.0 2.9E-09 6.3E-14 87.2 11.5 98 49-156 120-227 (278)
162 COG2519 GCD14 tRNA(1-methylade 99.0 3.8E-09 8.3E-14 84.1 11.3 102 45-161 93-199 (256)
163 KOG2940 Predicted methyltransf 99.0 4.4E-10 9.5E-15 87.7 5.6 101 50-158 75-175 (325)
164 PF01596 Methyltransf_3: O-met 99.0 1.1E-09 2.3E-14 86.4 7.8 99 49-157 47-155 (205)
165 COG0220 Predicted S-adenosylme 99.0 2.4E-09 5.3E-14 85.3 9.9 105 50-160 51-167 (227)
166 PF01170 UPF0020: Putative RNA 99.0 1.6E-09 3.5E-14 83.8 8.4 107 49-157 30-150 (179)
167 PF10294 Methyltransf_16: Puta 99.0 4.7E-09 1E-13 80.8 10.9 101 49-157 47-156 (173)
168 TIGR02085 meth_trns_rumB 23S r 99.0 7.6E-09 1.6E-13 89.1 13.1 99 49-158 235-335 (374)
169 TIGR00479 rumA 23S rRNA (uraci 99.0 5.6E-09 1.2E-13 91.7 12.2 98 49-157 294-396 (431)
170 COG0421 SpeE Spermidine syntha 99.0 4.6E-09 9.9E-14 86.4 10.7 112 43-157 72-190 (282)
171 PRK00050 16S rRNA m(4)C1402 me 99.0 1E-08 2.3E-13 84.8 12.8 85 36-120 8-97 (296)
172 PF03602 Cons_hypoth95: Conser 99.0 1.6E-09 3.4E-14 84.0 7.4 105 49-160 44-156 (183)
173 PRK04148 hypothetical protein; 99.0 2.2E-08 4.8E-13 72.9 12.1 105 36-158 4-110 (134)
174 TIGR00095 RNA methyltransferas 98.9 1E-08 2.2E-13 80.0 10.4 102 49-158 51-160 (189)
175 PF10672 Methyltrans_SAM: S-ad 98.9 4.6E-09 9.9E-14 86.5 8.8 124 34-160 112-241 (286)
176 COG1352 CheR Methylase of chem 98.9 1.5E-08 3.2E-13 82.7 11.4 102 50-157 99-241 (268)
177 PRK00536 speE spermidine synth 98.9 2E-08 4.4E-13 81.7 11.8 101 41-158 66-172 (262)
178 PLN02589 caffeoyl-CoA O-methyl 98.9 8.2E-09 1.8E-13 83.5 9.3 110 36-155 67-188 (247)
179 KOG2904 Predicted methyltransf 98.9 3.7E-08 8.1E-13 79.0 12.4 109 50-158 151-286 (328)
180 PTZ00338 dimethyladenosine tra 98.9 7.7E-09 1.7E-13 86.0 9.0 85 37-125 26-113 (294)
181 KOG3045 Predicted RNA methylas 98.9 9.6E-09 2.1E-13 81.7 8.8 102 32-159 164-266 (325)
182 COG2521 Predicted archaeal met 98.9 4.8E-09 1E-13 82.2 6.2 105 49-157 136-245 (287)
183 PF07942 N2227: N2227-like pro 98.9 2.4E-08 5.3E-13 81.3 10.2 116 33-156 37-201 (270)
184 PF12147 Methyltransf_20: Puta 98.9 1.4E-07 3E-12 76.7 14.4 129 50-182 138-280 (311)
185 KOG1499 Protein arginine N-met 98.9 9E-09 2E-13 85.4 7.8 100 49-154 62-164 (346)
186 PRK11933 yebU rRNA (cytosine-C 98.9 3.9E-08 8.4E-13 86.6 12.2 111 49-159 115-244 (470)
187 PF01564 Spermine_synth: Sperm 98.8 1.1E-08 2.3E-13 83.1 7.9 112 43-157 72-191 (246)
188 PF02475 Met_10: Met-10+ like- 98.8 9.6E-09 2.1E-13 80.4 7.2 104 37-154 92-199 (200)
189 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.8 5.3E-09 1.2E-13 84.6 5.6 148 8-158 14-200 (256)
190 TIGR00478 tly hemolysin TlyA f 98.8 5.1E-08 1.1E-12 77.9 11.0 102 36-157 63-171 (228)
191 KOG3420 Predicted RNA methylas 98.8 4.9E-09 1.1E-13 76.2 4.2 77 49-126 50-127 (185)
192 PF05185 PRMT5: PRMT5 arginine 98.8 2.6E-08 5.6E-13 87.3 9.3 99 49-154 188-294 (448)
193 COG0030 KsgA Dimethyladenosine 98.8 1.2E-07 2.5E-12 76.7 11.7 88 36-125 19-107 (259)
194 PRK05031 tRNA (uracil-5-)-meth 98.8 9.1E-08 2E-12 82.1 11.4 97 49-158 208-321 (362)
195 TIGR02143 trmA_only tRNA (urac 98.7 9.3E-08 2E-12 81.7 10.9 96 50-158 200-312 (353)
196 PF08704 GCD14: tRNA methyltra 98.7 1.2E-07 2.7E-12 76.5 11.0 100 45-158 39-147 (247)
197 KOG1331 Predicted methyltransf 98.7 7.5E-09 1.6E-13 83.6 3.7 113 32-158 32-144 (293)
198 COG0742 N6-adenine-specific me 98.7 2E-07 4.3E-12 71.6 10.7 104 49-158 45-155 (187)
199 PRK04338 N(2),N(2)-dimethylgua 98.7 1.1E-07 2.3E-12 82.0 10.1 97 49-157 59-158 (382)
200 PRK01544 bifunctional N5-gluta 98.7 1E-07 2.2E-12 85.1 9.7 113 49-161 349-466 (506)
201 KOG1661 Protein-L-isoaspartate 98.7 6.2E-08 1.4E-12 74.8 6.9 107 36-157 72-193 (237)
202 COG2520 Predicted methyltransf 98.7 2.8E-07 6.1E-12 77.4 11.3 111 37-160 179-292 (341)
203 TIGR03439 methyl_EasF probable 98.7 4.5E-07 9.7E-12 76.1 12.5 110 42-157 72-197 (319)
204 KOG0820 Ribosomal RNA adenine 98.6 2.1E-07 4.5E-12 74.7 9.3 84 37-124 48-134 (315)
205 PRK11727 23S rRNA mA1618 methy 98.6 9.3E-08 2E-12 80.2 7.5 78 49-126 116-202 (321)
206 KOG1500 Protein arginine N-met 98.6 2.8E-07 6.1E-12 76.0 10.0 99 48-154 178-279 (517)
207 TIGR00308 TRM1 tRNA(guanine-26 98.6 1.7E-07 3.6E-12 80.4 9.1 96 50-156 47-146 (374)
208 PF03141 Methyltransf_29: Puta 98.6 2.2E-08 4.8E-13 86.8 3.4 98 49-158 119-220 (506)
209 PF01728 FtsJ: FtsJ-like methy 98.6 1.1E-07 2.4E-12 73.6 6.7 105 49-162 25-144 (181)
210 PF02384 N6_Mtase: N-6 DNA Met 98.6 1.8E-07 3.9E-12 78.7 8.3 124 34-157 32-183 (311)
211 COG0144 Sun tRNA and rRNA cyto 98.6 1.3E-06 2.8E-11 74.7 13.3 122 39-160 147-291 (355)
212 KOG1709 Guanidinoacetate methy 98.5 1.5E-06 3.2E-11 67.6 10.4 109 41-157 96-206 (271)
213 KOG3178 Hydroxyindole-O-methyl 98.5 8.9E-07 1.9E-11 73.8 9.9 101 49-161 179-279 (342)
214 PRK11783 rlmL 23S rRNA m(2)G24 98.5 3.2E-06 6.9E-11 78.6 14.0 109 49-160 192-350 (702)
215 PF09445 Methyltransf_15: RNA 98.5 2.3E-07 5E-12 70.0 5.3 97 50-147 2-112 (163)
216 COG0116 Predicted N6-adenine-s 98.5 2.5E-06 5.5E-11 72.3 11.7 109 49-158 193-345 (381)
217 COG2265 TrmA SAM-dependent met 98.5 1.4E-06 3E-11 76.1 10.2 99 49-158 295-397 (432)
218 PF00398 RrnaAD: Ribosomal RNA 98.4 2.7E-06 5.9E-11 69.8 11.0 85 37-123 20-107 (262)
219 COG0293 FtsJ 23S rRNA methylas 98.4 2.1E-06 4.5E-11 67.0 9.5 100 49-161 47-163 (205)
220 TIGR02987 met_A_Alw26 type II 98.4 2E-06 4.3E-11 77.6 10.1 76 50-125 34-124 (524)
221 KOG1269 SAM-dependent methyltr 98.4 7.3E-07 1.6E-11 76.0 6.5 106 43-157 107-215 (364)
222 PF05958 tRNA_U5-meth_tr: tRNA 98.4 1.7E-06 3.8E-11 73.9 8.8 83 40-123 189-288 (352)
223 PF04816 DUF633: Family of unk 98.4 6.1E-06 1.3E-10 65.0 10.8 120 51-181 1-124 (205)
224 COG0500 SmtA SAM-dependent met 98.4 6.5E-06 1.4E-10 61.0 10.6 100 51-160 52-158 (257)
225 PF08123 DOT1: Histone methyla 98.4 2.5E-06 5.5E-11 67.2 8.5 113 36-156 31-157 (205)
226 PF09243 Rsm22: Mitochondrial 98.4 5.2E-06 1.1E-10 68.6 10.8 105 49-162 35-144 (274)
227 PF02527 GidB: rRNA small subu 98.3 3.4E-06 7.3E-11 65.3 8.1 99 50-161 51-152 (184)
228 PF01269 Fibrillarin: Fibrilla 98.3 6.7E-06 1.5E-10 64.7 9.7 119 29-157 51-178 (229)
229 KOG2798 Putative trehalase [Ca 98.3 3.5E-06 7.5E-11 69.1 8.0 118 31-156 129-295 (369)
230 KOG3987 Uncharacterized conser 98.3 1.3E-07 2.8E-12 73.0 -0.5 93 49-157 114-207 (288)
231 COG4076 Predicted RNA methylas 98.3 2.8E-06 6E-11 64.7 6.5 98 49-155 34-133 (252)
232 KOG1663 O-methyltransferase [S 98.2 1.2E-05 2.7E-10 63.2 10.0 112 34-156 59-182 (237)
233 PF11968 DUF3321: Putative met 98.2 3.6E-06 7.9E-11 65.9 7.0 89 50-157 54-149 (219)
234 COG0357 GidB Predicted S-adeno 98.2 1.9E-05 4.1E-10 62.4 10.7 96 49-157 69-168 (215)
235 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.2 8E-06 1.7E-10 67.8 9.0 114 45-158 83-220 (283)
236 TIGR00006 S-adenosyl-methyltra 98.2 4.7E-05 1E-09 63.4 12.6 85 36-120 9-99 (305)
237 COG3897 Predicted methyltransf 98.1 8.8E-06 1.9E-10 62.5 7.1 101 49-161 81-183 (218)
238 COG1889 NOP1 Fibrillarin-like 98.1 4.8E-05 1E-09 58.8 10.9 120 29-157 54-180 (231)
239 PF04672 Methyltransf_19: S-ad 98.1 1.9E-05 4.1E-10 64.2 9.2 120 37-160 57-193 (267)
240 PRK11760 putative 23S rRNA C24 98.1 3.2E-05 7E-10 64.9 9.9 84 49-150 213-296 (357)
241 KOG2730 Methylase [General fun 98.0 9.1E-06 2E-10 63.5 5.3 74 50-124 97-176 (263)
242 COG4262 Predicted spermidine s 98.0 7.1E-05 1.5E-09 62.8 10.6 108 49-158 291-408 (508)
243 PF03059 NAS: Nicotianamine sy 98.0 0.00025 5.4E-09 58.2 13.8 103 49-158 122-231 (276)
244 PF06962 rRNA_methylase: Putat 98.0 3E-05 6.5E-10 56.9 7.1 108 72-181 1-125 (140)
245 COG1189 Predicted rRNA methyla 97.9 0.00011 2.3E-09 58.4 9.6 110 36-158 67-179 (245)
246 COG2384 Predicted SAM-dependen 97.9 0.00031 6.6E-09 55.2 11.4 130 40-181 10-143 (226)
247 PRK10742 putative methyltransf 97.9 6.7E-05 1.5E-09 60.4 7.6 75 50-125 91-176 (250)
248 KOG1122 tRNA and rRNA cytosine 97.9 0.00015 3.3E-09 61.9 10.1 115 45-160 239-374 (460)
249 KOG3115 Methyltransferase-like 97.9 6.5E-05 1.4E-09 58.1 7.0 109 50-158 63-184 (249)
250 PF13578 Methyltransf_24: Meth 97.8 1.1E-05 2.4E-10 56.7 2.6 97 52-157 1-105 (106)
251 PF03141 Methyltransf_29: Puta 97.8 7.9E-05 1.7E-09 65.1 7.4 121 49-182 367-492 (506)
252 PF13679 Methyltransf_32: Meth 97.8 0.00017 3.6E-09 53.6 8.0 75 49-125 27-111 (141)
253 TIGR01444 fkbM_fam methyltrans 97.7 9.3E-05 2E-09 54.8 6.3 57 50-106 1-60 (143)
254 COG0275 Predicted S-adenosylme 97.7 0.0012 2.5E-08 54.5 13.0 85 36-120 12-103 (314)
255 PF01795 Methyltransf_5: MraW 97.7 0.00041 8.8E-09 57.9 10.0 85 36-120 9-100 (310)
256 KOG4589 Cell division protein 97.7 0.00029 6.2E-09 53.9 8.2 106 45-160 68-187 (232)
257 KOG3201 Uncharacterized conser 97.6 7.3E-05 1.6E-09 55.7 3.5 102 49-157 31-140 (201)
258 PF11599 AviRa: RRNA methyltra 97.6 0.0019 4.1E-08 50.6 11.1 109 49-157 53-214 (246)
259 KOG2915 tRNA(1-methyladenosine 97.5 0.0013 2.7E-08 53.4 10.4 96 45-153 104-205 (314)
260 KOG2187 tRNA uracil-5-methyltr 97.5 0.00014 3E-09 63.7 5.3 56 49-105 385-442 (534)
261 COG0286 HsdM Type I restrictio 97.5 0.0013 2.8E-08 58.8 11.2 123 36-158 174-327 (489)
262 KOG1562 Spermidine synthase [A 97.5 0.00032 6.9E-09 57.4 6.4 116 39-157 113-236 (337)
263 PF05971 Methyltransf_10: Prot 97.5 0.00041 8.8E-09 57.6 6.9 77 50-126 105-190 (299)
264 PF07091 FmrO: Ribosomal RNA m 97.4 0.00032 7E-09 56.3 5.6 90 34-126 90-184 (251)
265 cd00315 Cyt_C5_DNA_methylase C 97.4 0.0024 5.2E-08 52.8 10.5 73 50-126 2-75 (275)
266 KOG1099 SAM-dependent methyltr 97.3 0.00052 1.1E-08 54.2 5.1 98 49-157 43-163 (294)
267 KOG2198 tRNA cytosine-5-methyl 97.3 0.0026 5.6E-08 53.8 9.4 119 41-160 150-299 (375)
268 COG4798 Predicted methyltransf 97.2 0.0024 5.2E-08 49.3 8.0 106 49-158 50-167 (238)
269 KOG1596 Fibrillarin and relate 97.2 0.0022 4.7E-08 51.1 7.7 103 45-157 155-261 (317)
270 KOG4058 Uncharacterized conser 97.2 0.0041 8.9E-08 45.9 8.4 100 49-161 74-176 (199)
271 COG5459 Predicted rRNA methyla 97.1 0.001 2.2E-08 55.8 5.6 108 49-162 115-230 (484)
272 PF01861 DUF43: Protein of unk 97.0 0.013 2.9E-07 46.9 10.9 100 49-156 46-148 (243)
273 PF01555 N6_N4_Mtase: DNA meth 97.0 0.0024 5.2E-08 50.8 6.5 51 36-88 181-231 (231)
274 PRK11524 putative methyltransf 97.0 0.0027 5.9E-08 52.8 6.8 54 36-91 198-251 (284)
275 PRK09424 pntA NAD(P) transhydr 96.9 0.0095 2.1E-07 53.4 10.4 98 49-158 166-286 (509)
276 COG1064 AdhP Zn-dependent alco 96.9 0.0081 1.8E-07 50.8 9.0 95 45-159 165-261 (339)
277 KOG2671 Putative RNA methylase 96.9 0.002 4.3E-08 53.9 5.1 111 45-157 207-354 (421)
278 PF02005 TRM: N2,N2-dimethylgu 96.8 0.0039 8.5E-08 53.8 6.8 97 50-157 52-154 (377)
279 KOG0024 Sorbitol dehydrogenase 96.8 0.0074 1.6E-07 50.3 8.0 108 45-168 168-284 (354)
280 KOG2793 Putative N2,N2-dimethy 96.8 0.0095 2.1E-07 48.2 8.5 101 50-158 89-200 (248)
281 PF04989 CmcI: Cephalosporin h 96.8 0.0054 1.2E-07 48.2 6.9 101 49-157 34-147 (206)
282 PHA01634 hypothetical protein 96.7 0.0044 9.5E-08 44.5 5.4 43 49-91 30-72 (156)
283 PRK13699 putative methylase; P 96.7 0.0068 1.5E-07 48.7 6.8 54 36-91 153-206 (227)
284 PF04445 SAM_MT: Putative SAM- 96.7 0.0071 1.5E-07 48.5 6.8 75 50-125 78-163 (234)
285 COG1867 TRM1 N2,N2-dimethylgua 96.6 0.013 2.8E-07 49.7 8.5 107 39-156 44-153 (380)
286 PF00145 DNA_methylase: C-5 cy 96.6 0.01 2.2E-07 50.0 7.9 71 50-126 2-74 (335)
287 KOG2920 Predicted methyltransf 96.6 0.00089 1.9E-08 54.6 1.1 102 49-157 118-234 (282)
288 PLN02668 indole-3-acetate carb 96.5 0.017 3.7E-07 49.8 8.7 53 109-161 158-241 (386)
289 TIGR00675 dcm DNA-methyltransf 96.4 0.028 6.1E-07 47.4 9.4 72 51-126 1-72 (315)
290 COG4627 Uncharacterized protei 96.4 0.0009 1.9E-08 49.7 0.3 44 109-157 43-86 (185)
291 COG1063 Tdh Threonine dehydrog 96.4 0.018 3.8E-07 49.4 8.1 93 50-159 171-271 (350)
292 COG3129 Predicted SAM-dependen 96.4 0.01 2.2E-07 47.2 5.8 76 50-126 81-166 (292)
293 KOG0822 Protein kinase inhibit 96.3 0.0075 1.6E-07 53.3 5.5 103 50-158 370-479 (649)
294 PF03492 Methyltransf_7: SAM d 96.3 0.023 4.9E-07 48.4 7.9 112 50-162 19-188 (334)
295 PRK09880 L-idonate 5-dehydroge 96.1 0.042 9.1E-07 46.8 9.0 95 49-158 171-267 (343)
296 KOG1501 Arginine N-methyltrans 96.1 0.01 2.2E-07 51.3 4.8 70 50-119 69-141 (636)
297 TIGR00027 mthyl_TIGR00027 meth 95.9 0.17 3.6E-06 41.6 11.3 117 36-159 70-199 (260)
298 COG1565 Uncharacterized conser 95.9 0.03 6.5E-07 47.5 7.0 48 45-92 75-131 (370)
299 COG0270 Dcm Site-specific DNA 95.9 0.065 1.4E-06 45.6 9.0 74 50-126 5-80 (328)
300 PF07757 AdoMet_MTase: Predict 95.9 0.0075 1.6E-07 42.0 2.6 30 49-79 60-89 (112)
301 KOG1227 Putative methyltransfe 95.8 0.0046 1E-07 50.8 1.7 91 49-152 196-290 (351)
302 PF03269 DUF268: Caenorhabditi 95.8 0.012 2.6E-07 44.1 3.6 104 50-158 4-112 (177)
303 PRK10458 DNA cytosine methylas 95.6 0.18 4E-06 44.8 10.8 77 50-126 90-182 (467)
304 PF06859 Bin3: Bicoid-interact 95.5 0.0032 6.9E-08 44.1 -0.2 44 113-157 1-44 (110)
305 COG4301 Uncharacterized conser 95.5 0.18 4E-06 40.7 9.4 105 48-157 79-193 (321)
306 PRK13699 putative methylase; P 95.4 0.072 1.6E-06 42.8 7.2 62 96-157 2-72 (227)
307 PRK11524 putative methyltransf 95.4 0.033 7.1E-07 46.3 5.2 64 94-157 7-80 (284)
308 cd08283 FDH_like_1 Glutathione 95.3 0.19 4.2E-06 43.5 10.1 105 49-157 186-306 (386)
309 PF02636 Methyltransf_28: Puta 95.3 0.091 2E-06 42.9 7.5 44 49-92 20-72 (252)
310 TIGR00561 pntA NAD(P) transhyd 95.2 0.09 2E-06 47.2 7.7 96 49-156 165-283 (511)
311 cd08237 ribitol-5-phosphate_DH 94.9 0.37 8E-06 41.0 10.5 90 49-158 165-257 (341)
312 PF05711 TylF: Macrocin-O-meth 94.7 0.42 9E-06 38.9 9.6 118 36-162 62-217 (248)
313 COG1255 Uncharacterized protei 94.6 0.81 1.8E-05 32.4 9.5 86 50-157 16-102 (129)
314 TIGR02822 adh_fam_2 zinc-bindi 94.5 0.66 1.4E-05 39.3 10.9 88 49-158 167-255 (329)
315 PF00107 ADH_zinc_N: Zinc-bind 94.4 0.14 3.1E-06 36.7 5.9 87 57-160 1-92 (130)
316 cd08254 hydroxyacyl_CoA_DH 6-h 94.3 0.45 9.7E-06 39.9 9.6 91 50-158 168-264 (338)
317 PF11899 DUF3419: Protein of u 94.3 0.13 2.8E-06 44.6 6.2 62 94-160 275-337 (380)
318 cd00401 AdoHcyase S-adenosyl-L 94.3 0.26 5.6E-06 43.2 8.1 87 49-159 203-291 (413)
319 COG3315 O-Methyltransferase in 94.1 0.48 1E-05 39.7 9.1 115 37-158 82-210 (297)
320 PF11312 DUF3115: Protein of u 94.1 0.16 3.4E-06 42.4 6.0 107 49-157 88-242 (315)
321 COG3510 CmcI Cephalosporin hyd 94.0 0.46 1E-05 36.9 7.9 101 47-157 69-180 (237)
322 cd08230 glucose_DH Glucose deh 93.7 0.36 7.7E-06 41.2 8.0 90 49-158 174-270 (355)
323 PTZ00357 methyltransferase; Pr 93.7 0.21 4.6E-06 46.1 6.5 98 50-152 703-830 (1072)
324 PRK01747 mnmC bifunctional tRN 93.6 0.24 5.1E-06 46.3 7.2 104 50-157 60-206 (662)
325 TIGR01202 bchC 2-desacetyl-2-h 93.6 0.59 1.3E-05 39.1 9.0 85 49-158 146-232 (308)
326 COG0686 Ald Alanine dehydrogen 93.3 0.37 8E-06 40.3 6.9 98 49-156 169-267 (371)
327 PLN02494 adenosylhomocysteinas 93.3 0.51 1.1E-05 42.0 8.2 88 49-159 255-343 (477)
328 cd08239 THR_DH_like L-threonin 93.3 0.42 9.2E-06 40.4 7.7 93 49-158 165-263 (339)
329 TIGR00936 ahcY adenosylhomocys 93.2 0.45 9.8E-06 41.6 7.7 88 49-160 196-285 (406)
330 KOG1098 Putative SAM-dependent 93.2 0.14 3.1E-06 46.3 4.7 101 45-155 43-156 (780)
331 PF02254 TrkA_N: TrkA-N domain 93.2 1.4 2.9E-05 30.9 9.0 90 56-160 4-99 (116)
332 PF02737 3HCDH_N: 3-hydroxyacy 93.2 0.57 1.2E-05 36.1 7.5 97 50-161 1-118 (180)
333 TIGR03366 HpnZ_proposed putati 93.1 1.3 2.7E-05 36.5 10.1 93 49-158 122-219 (280)
334 COG1568 Predicted methyltransf 93.1 0.68 1.5E-05 38.1 7.9 103 50-161 155-264 (354)
335 PF10237 N6-adenineMlase: Prob 92.9 1.8 4E-05 32.8 9.7 93 49-158 27-124 (162)
336 TIGR03451 mycoS_dep_FDH mycoth 92.8 1 2.3E-05 38.4 9.5 93 49-158 178-277 (358)
337 PF03686 UPF0146: Uncharacteri 92.8 1.1 2.4E-05 32.3 7.9 99 37-160 5-105 (127)
338 cd08281 liver_ADH_like1 Zinc-d 92.8 0.92 2E-05 39.0 9.1 92 50-158 194-291 (371)
339 PRK05786 fabG 3-ketoacyl-(acyl 92.8 2.2 4.7E-05 33.8 10.7 105 50-157 7-135 (238)
340 KOG2651 rRNA adenine N-6-methy 92.4 0.36 7.9E-06 41.4 5.8 39 49-87 155-193 (476)
341 KOG2078 tRNA modification enzy 92.4 0.17 3.7E-06 43.8 3.9 76 29-106 232-311 (495)
342 KOG2352 Predicted spermine/spe 92.4 0.32 6.9E-06 43.0 5.6 108 49-157 297-416 (482)
343 COG1748 LYS9 Saccharopine dehy 92.2 0.92 2E-05 39.4 8.1 71 50-122 3-77 (389)
344 PRK05476 S-adenosyl-L-homocyst 92.2 0.55 1.2E-05 41.3 6.9 88 49-160 213-302 (425)
345 PRK07417 arogenate dehydrogena 91.7 1.1 2.4E-05 37.0 8.0 84 50-153 2-87 (279)
346 PLN03154 putative allyl alcoho 91.6 1.4 3.1E-05 37.6 8.8 92 49-157 160-258 (348)
347 KOG0821 Predicted ribosomal RN 91.6 0.44 9.6E-06 37.8 5.1 57 49-105 52-109 (326)
348 KOG1253 tRNA methyltransferase 91.5 0.13 2.9E-06 45.3 2.3 97 50-157 112-216 (525)
349 PLN02740 Alcohol dehydrogenase 91.4 1.8 3.9E-05 37.4 9.3 93 49-158 200-301 (381)
350 PRK07819 3-hydroxybutyryl-CoA 91.3 2.1 4.5E-05 35.6 9.2 98 50-162 7-126 (286)
351 KOG2539 Mitochondrial/chloropl 91.3 1.4 3.1E-05 38.9 8.3 107 50-160 203-318 (491)
352 PRK08267 short chain dehydroge 91.2 5.9 0.00013 31.9 11.8 71 50-123 3-87 (260)
353 PRK09072 short chain dehydroge 90.8 4 8.7E-05 33.0 10.4 73 50-123 7-90 (263)
354 cd05188 MDR Medium chain reduc 90.8 2.4 5.3E-05 34.0 9.1 93 49-158 136-233 (271)
355 PRK08293 3-hydroxybutyryl-CoA 90.8 1.8 3.9E-05 35.9 8.4 94 50-157 5-120 (287)
356 PRK05872 short chain dehydroge 90.7 6.5 0.00014 32.6 11.7 72 50-123 11-95 (296)
357 TIGR00497 hsdM type I restrict 90.6 4.2 9.2E-05 36.7 11.2 109 49-157 219-355 (501)
358 PRK06035 3-hydroxyacyl-CoA deh 90.5 2.3 5E-05 35.4 8.8 93 50-157 5-121 (291)
359 PRK09260 3-hydroxybutyryl-CoA 90.4 1.2 2.7E-05 36.9 7.1 95 50-158 3-118 (288)
360 PRK08265 short chain dehydroge 90.2 5.4 0.00012 32.3 10.7 69 50-122 8-89 (261)
361 PF10354 DUF2431: Domain of un 90.1 4.1 9E-05 31.0 9.2 107 54-160 3-128 (166)
362 TIGR00518 alaDH alanine dehydr 90.0 1.2 2.6E-05 38.5 7.0 100 49-158 168-268 (370)
363 COG0287 TyrA Prephenate dehydr 90.0 1.6 3.4E-05 36.3 7.2 91 50-157 5-98 (279)
364 PRK10309 galactitol-1-phosphat 90.0 4.1 8.9E-05 34.5 10.1 92 49-157 162-260 (347)
365 PF03721 UDPG_MGDP_dh_N: UDP-g 89.9 1.5 3.2E-05 34.0 6.7 108 50-163 2-126 (185)
366 PRK07066 3-hydroxybutyryl-CoA 89.9 2.5 5.5E-05 35.8 8.6 96 49-158 8-120 (321)
367 cd08232 idonate-5-DH L-idonate 89.7 2.4 5.1E-05 35.7 8.4 91 49-157 167-262 (339)
368 PLN02586 probable cinnamyl alc 89.4 2.8 6.2E-05 35.9 8.8 92 49-157 185-278 (360)
369 cd08238 sorbose_phosphate_red 89.3 5.5 0.00012 34.8 10.6 94 50-156 178-287 (410)
370 PRK07502 cyclohexadienyl dehyd 89.1 2.9 6.3E-05 35.0 8.4 89 50-156 8-99 (307)
371 TIGR03201 dearomat_had 6-hydro 89.1 3 6.6E-05 35.4 8.7 41 49-89 168-209 (349)
372 COG2933 Predicted SAM-dependen 89.1 1.9 4.1E-05 35.3 6.7 66 50-122 214-279 (358)
373 PF02086 MethyltransfD12: D12 89.1 0.77 1.7E-05 37.3 4.8 57 33-90 5-62 (260)
374 PF04072 LCM: Leucine carboxyl 89.1 1.7 3.6E-05 33.5 6.5 102 36-143 65-182 (183)
375 PLN02827 Alcohol dehydrogenase 89.0 3.1 6.7E-05 36.0 8.8 92 49-157 195-295 (378)
376 PF02719 Polysacc_synt_2: Poly 88.9 1.7 3.8E-05 36.2 6.7 71 57-127 6-91 (293)
377 PRK08324 short chain dehydroge 88.9 3.6 7.9E-05 38.6 9.7 106 50-157 424-557 (681)
378 PRK03562 glutathione-regulated 88.7 7.4 0.00016 36.2 11.4 94 49-158 401-499 (621)
379 COG2961 ComJ Protein involved 88.5 8.4 0.00018 31.3 10.0 98 52-157 93-195 (279)
380 TIGR02818 adh_III_F_hyde S-(hy 88.4 5.5 0.00012 34.2 9.9 93 49-158 187-288 (368)
381 PRK07533 enoyl-(acyl carrier p 88.3 11 0.00023 30.6 11.1 108 49-157 11-148 (258)
382 cd08255 2-desacetyl-2-hydroxye 88.3 5.8 0.00013 32.2 9.6 90 49-157 99-190 (277)
383 cd08245 CAD Cinnamyl alcohol d 88.2 9.6 0.00021 31.8 11.1 92 49-157 164-256 (330)
384 PRK05808 3-hydroxybutyryl-CoA 88.1 4.4 9.6E-05 33.4 8.8 95 50-159 5-120 (282)
385 cd08293 PTGR2 Prostaglandin re 88.0 3 6.6E-05 35.1 8.0 92 49-157 156-254 (345)
386 PRK08339 short chain dehydroge 88.0 9.7 0.00021 30.9 10.7 72 50-122 10-94 (263)
387 KOG3924 Putative protein methy 87.9 2.3 4.9E-05 36.8 6.9 114 36-157 181-308 (419)
388 PRK05708 2-dehydropantoate 2-r 87.9 5.9 0.00013 33.2 9.5 95 50-157 4-104 (305)
389 PF02153 PDH: Prephenate dehyd 87.9 2.8 6.1E-05 34.2 7.4 79 62-159 2-81 (258)
390 PF03446 NAD_binding_2: NAD bi 87.8 3.1 6.7E-05 31.4 7.1 94 50-163 3-100 (163)
391 cd08234 threonine_DH_like L-th 87.8 5.4 0.00012 33.4 9.4 92 49-157 161-257 (334)
392 cd08285 NADP_ADH NADP(H)-depen 87.8 6.2 0.00013 33.4 9.8 92 49-157 168-266 (351)
393 PRK11064 wecC UDP-N-acetyl-D-m 87.6 5.6 0.00012 35.0 9.5 110 50-162 5-124 (415)
394 PRK07530 3-hydroxybutyryl-CoA 87.5 5.3 0.00012 33.2 9.0 94 50-158 6-120 (292)
395 cd08277 liver_alcohol_DH_like 87.5 3.4 7.3E-05 35.4 8.0 93 49-158 186-287 (365)
396 PRK03659 glutathione-regulated 87.3 10 0.00022 35.2 11.4 95 50-160 402-501 (601)
397 cd08295 double_bond_reductase_ 87.1 5.2 0.00011 33.8 8.9 92 49-157 153-251 (338)
398 PRK07063 short chain dehydroge 87.0 11 0.00023 30.4 10.4 73 50-123 9-96 (260)
399 cd08300 alcohol_DH_class_III c 87.0 10 0.00022 32.5 10.8 93 49-158 188-289 (368)
400 COG0863 DNA modification methy 86.9 2.3 5.1E-05 35.2 6.5 54 36-91 212-265 (302)
401 PRK07806 short chain dehydroge 86.8 12 0.00027 29.7 10.6 105 50-157 8-134 (248)
402 PRK06522 2-dehydropantoate 2-r 86.7 8.8 0.00019 31.8 9.9 95 50-157 2-100 (304)
403 PRK10669 putative cation:proto 86.6 11 0.00023 34.6 11.1 92 50-157 419-515 (558)
404 PRK12939 short chain dehydroge 86.5 9 0.0002 30.4 9.6 71 50-122 9-93 (250)
405 cd05278 FDH_like Formaldehyde 86.4 8.1 0.00018 32.5 9.7 92 49-157 169-267 (347)
406 TIGR02437 FadB fatty oxidation 86.4 4.5 9.8E-05 38.3 8.7 97 49-160 314-431 (714)
407 cd08294 leukotriene_B4_DH_like 86.2 4.5 9.7E-05 33.8 8.0 91 49-157 145-241 (329)
408 PRK07326 short chain dehydroge 86.1 9.4 0.0002 30.1 9.5 71 50-122 8-91 (237)
409 TIGR02441 fa_ox_alpha_mit fatt 86.1 3.5 7.6E-05 39.2 7.8 97 49-160 336-453 (737)
410 PRK09496 trkA potassium transp 86.1 14 0.0003 32.6 11.3 66 49-120 232-304 (453)
411 PLN02514 cinnamyl-alcohol dehy 86.0 9.4 0.0002 32.6 9.9 92 49-157 182-275 (357)
412 cd08242 MDR_like Medium chain 85.8 12 0.00026 31.1 10.3 87 49-156 157-244 (319)
413 PF03514 GRAS: GRAS domain fam 85.8 9.8 0.00021 33.0 9.9 119 37-155 100-242 (374)
414 PRK06130 3-hydroxybutyryl-CoA 85.7 4 8.6E-05 34.2 7.4 94 50-157 6-115 (311)
415 cd08296 CAD_like Cinnamyl alco 85.6 6.3 0.00014 33.2 8.6 92 49-157 165-259 (333)
416 PF04378 RsmJ: Ribosomal RNA s 85.5 4.9 0.00011 32.6 7.4 99 52-158 62-165 (245)
417 PF03807 F420_oxidored: NADP o 85.4 3.9 8.4E-05 27.5 6.0 85 51-154 2-91 (96)
418 PF05206 TRM13: Methyltransfer 85.4 2.5 5.3E-05 34.7 5.7 58 49-107 20-86 (259)
419 PRK12829 short chain dehydroge 85.4 14 0.00029 29.7 10.2 71 49-122 12-95 (264)
420 PRK06196 oxidoreductase; Provi 85.4 16 0.00034 30.6 10.8 70 49-123 27-109 (315)
421 PRK06701 short chain dehydroge 85.2 14 0.00029 30.6 10.3 106 50-157 48-181 (290)
422 cd08261 Zn_ADH7 Alcohol dehydr 85.2 9.8 0.00021 31.9 9.6 91 50-157 162-258 (337)
423 PRK07097 gluconate 5-dehydroge 85.1 17 0.00037 29.3 10.7 73 50-123 12-97 (265)
424 PLN02545 3-hydroxybutyryl-CoA 85.1 6.1 0.00013 32.9 8.1 94 50-157 6-119 (295)
425 TIGR02825 B4_12hDH leukotriene 85.0 16 0.00034 30.6 10.8 91 49-157 140-237 (325)
426 PRK07576 short chain dehydroge 85.0 14 0.00031 29.9 10.2 70 50-121 11-94 (264)
427 PLN02256 arogenate dehydrogena 84.9 10 0.00022 31.9 9.3 84 49-153 37-123 (304)
428 cd08231 MDR_TM0436_like Hypoth 84.9 15 0.00033 31.2 10.7 92 49-157 179-280 (361)
429 cd05285 sorbitol_DH Sorbitol d 84.9 14 0.0003 31.2 10.4 91 50-157 165-265 (343)
430 PRK08306 dipicolinate synthase 84.8 6.8 0.00015 32.8 8.2 89 49-158 153-242 (296)
431 COG0677 WecC UDP-N-acetyl-D-ma 84.7 9.3 0.0002 33.3 8.9 106 49-162 10-133 (436)
432 PRK15057 UDP-glucose 6-dehydro 84.3 20 0.00044 31.2 11.2 107 50-162 2-122 (388)
433 PRK05693 short chain dehydroge 84.2 17 0.00037 29.5 10.3 67 50-123 3-82 (274)
434 COG1179 Dinucleotide-utilizing 84.1 4.7 0.0001 32.6 6.5 88 50-146 32-145 (263)
435 cd08301 alcohol_DH_plants Plan 83.9 12 0.00025 32.1 9.6 93 49-158 189-290 (369)
436 PRK06181 short chain dehydroge 83.9 11 0.00025 30.2 9.1 72 50-123 3-88 (263)
437 PRK11730 fadB multifunctional 83.9 8.2 0.00018 36.6 9.2 97 49-160 314-431 (715)
438 PRK12921 2-dehydropantoate 2-r 83.8 10 0.00022 31.5 9.0 95 50-157 2-102 (305)
439 PF02558 ApbA: Ketopantoate re 83.7 8.7 0.00019 28.2 7.7 91 51-158 1-102 (151)
440 COG0569 TrkA K+ transport syst 83.6 5.8 0.00013 31.7 7.1 66 50-120 2-73 (225)
441 PLN02178 cinnamyl-alcohol dehy 83.4 7 0.00015 33.8 8.0 92 49-158 180-274 (375)
442 PLN02896 cinnamyl-alcohol dehy 83.3 19 0.00042 30.5 10.6 72 50-123 12-89 (353)
443 TIGR02819 fdhA_non_GSH formald 83.2 22 0.00047 31.0 11.1 103 50-158 188-300 (393)
444 PRK05225 ketol-acid reductoiso 83.2 4.9 0.00011 35.8 6.8 87 49-157 37-131 (487)
445 PTZ00075 Adenosylhomocysteinas 83.1 5 0.00011 35.9 7.0 88 49-160 255-344 (476)
446 cd08298 CAD2 Cinnamyl alcohol 83.1 17 0.00036 30.4 10.1 86 50-157 170-256 (329)
447 cd08233 butanediol_DH_like (2R 83.1 20 0.00043 30.3 10.6 93 49-158 174-273 (351)
448 COG1062 AdhC Zn-dependent alco 82.7 15 0.00032 31.5 9.1 97 50-163 188-291 (366)
449 COG0604 Qor NADPH:quinone redu 82.7 6.6 0.00014 33.3 7.4 96 49-159 144-243 (326)
450 PF11899 DUF3419: Protein of u 82.6 6.5 0.00014 34.2 7.4 45 44-90 33-77 (380)
451 PRK00094 gpsA NAD(P)H-dependen 82.4 14 0.00029 31.0 9.3 92 50-157 3-105 (325)
452 PRK06129 3-hydroxyacyl-CoA deh 82.4 28 0.00061 29.1 11.6 39 50-89 4-44 (308)
453 cd08236 sugar_DH NAD(P)-depend 82.2 8.5 0.00019 32.4 8.0 92 49-157 161-258 (343)
454 PRK11154 fadJ multifunctional 82.1 9.7 0.00021 36.1 8.9 98 49-161 310-429 (708)
455 PRK07454 short chain dehydroge 82.1 23 0.0005 28.0 10.3 72 50-123 8-93 (241)
456 TIGR02279 PaaC-3OHAcCoADH 3-hy 82.1 3.4 7.3E-05 37.4 5.7 93 50-157 7-120 (503)
457 COG1086 Predicted nucleoside-d 82.1 6.8 0.00015 35.7 7.4 77 50-127 252-339 (588)
458 PRK07024 short chain dehydroge 82.0 8.1 0.00018 31.1 7.5 72 50-123 4-88 (257)
459 PRK07109 short chain dehydroge 81.9 10 0.00022 32.2 8.3 72 50-123 10-95 (334)
460 PRK07774 short chain dehydroge 81.7 20 0.00043 28.5 9.7 72 50-123 8-93 (250)
461 PRK10083 putative oxidoreducta 81.7 9 0.0002 32.2 8.0 94 50-158 163-260 (339)
462 PRK08177 short chain dehydroge 81.4 22 0.00047 27.9 9.7 67 50-122 3-80 (225)
463 PRK06182 short chain dehydroge 81.3 18 0.00038 29.4 9.4 67 50-123 5-84 (273)
464 PF01210 NAD_Gly3P_dh_N: NAD-d 81.3 10 0.00022 28.3 7.3 92 51-157 2-103 (157)
465 cd05283 CAD1 Cinnamyl alcohol 81.0 27 0.0006 29.3 10.7 91 50-157 172-263 (337)
466 KOG2015 NEDD8-activating compl 81.0 16 0.00036 30.9 8.7 75 49-126 41-140 (422)
467 cd08289 MDR_yhfp_like Yhfp put 81.0 17 0.00036 30.2 9.3 92 49-158 148-244 (326)
468 PRK09496 trkA potassium transp 81.0 15 0.00033 32.4 9.5 91 50-157 2-99 (453)
469 PRK08268 3-hydroxy-acyl-CoA de 80.8 3.6 7.9E-05 37.2 5.4 94 49-157 8-122 (507)
470 TIGR03026 NDP-sugDHase nucleot 80.5 29 0.00063 30.4 10.9 102 50-157 2-120 (411)
471 PTZ00142 6-phosphogluconate de 80.2 15 0.00032 33.0 8.9 96 50-157 3-101 (470)
472 PRK06101 short chain dehydroge 80.1 28 0.0006 27.6 10.4 53 50-107 3-59 (240)
473 COG2910 Putative NADH-flavin r 80.0 18 0.00039 28.2 8.1 86 51-149 3-94 (211)
474 PLN02253 xanthoxin dehydrogena 79.9 11 0.00025 30.6 7.8 72 50-123 20-104 (280)
475 PRK12491 pyrroline-5-carboxyla 79.8 22 0.00048 29.3 9.4 88 50-157 4-96 (272)
476 PRK07231 fabG 3-ketoacyl-(acyl 79.8 9.2 0.0002 30.4 7.1 72 50-123 7-91 (251)
477 PRK05854 short chain dehydroge 79.6 35 0.00075 28.5 10.8 72 50-123 16-103 (313)
478 cd08278 benzyl_alcohol_DH Benz 79.6 23 0.00049 30.3 9.8 92 49-157 188-285 (365)
479 PRK05993 short chain dehydroge 79.6 32 0.00069 28.0 10.4 67 50-123 6-86 (277)
480 KOG0023 Alcohol dehydrogenase, 79.3 10 0.00022 32.1 7.1 95 50-160 184-282 (360)
481 PF05430 Methyltransf_30: S-ad 79.2 1.1 2.4E-05 32.3 1.4 59 95-157 32-90 (124)
482 PF13460 NAD_binding_10: NADH( 79.1 13 0.00029 28.0 7.5 62 51-121 1-68 (183)
483 TIGR00872 gnd_rel 6-phosphoglu 78.9 10 0.00023 31.6 7.3 89 50-156 2-92 (298)
484 PRK08213 gluconate 5-dehydroge 78.8 29 0.00062 27.8 9.8 72 50-123 14-99 (259)
485 PRK06484 short chain dehydroge 78.8 35 0.00076 30.7 11.2 105 50-157 271-400 (520)
486 PRK08655 prephenate dehydrogen 78.5 15 0.00032 32.6 8.5 88 50-157 2-92 (437)
487 PRK05867 short chain dehydroge 78.2 11 0.00023 30.3 7.0 74 49-123 10-96 (253)
488 PF07279 DUF1442: Protein of u 78.2 33 0.00071 27.3 10.8 111 34-157 27-148 (218)
489 KOG1201 Hydroxysteroid 17-beta 78.1 32 0.00069 28.8 9.6 74 50-124 40-125 (300)
490 PRK08507 prephenate dehydrogen 78.1 12 0.00026 30.8 7.3 84 50-154 2-88 (275)
491 TIGR03589 PseB UDP-N-acetylglu 77.9 29 0.00062 29.2 9.8 72 50-123 6-84 (324)
492 COG5379 BtaA S-adenosylmethion 77.9 6.2 0.00013 33.0 5.4 77 75-159 291-368 (414)
493 PRK07523 gluconate 5-dehydroge 77.9 30 0.00065 27.6 9.6 72 50-123 12-97 (255)
494 PRK08085 gluconate 5-dehydroge 77.8 34 0.00073 27.3 10.7 72 50-123 11-96 (254)
495 PRK06249 2-dehydropantoate 2-r 77.6 26 0.00056 29.4 9.4 95 49-157 6-106 (313)
496 cd08291 ETR_like_1 2-enoyl thi 77.5 38 0.00083 28.2 10.5 90 50-157 145-242 (324)
497 PRK06482 short chain dehydroge 77.4 37 0.0008 27.5 10.3 70 50-123 4-86 (276)
498 PRK06113 7-alpha-hydroxysteroi 77.4 35 0.00076 27.3 10.8 73 49-123 12-98 (255)
499 PRK14620 NAD(P)H-dependent gly 77.1 34 0.00074 28.8 10.1 93 50-157 2-106 (326)
500 PF01488 Shikimate_DH: Shikima 77.1 7.8 0.00017 28.2 5.4 72 49-124 13-86 (135)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.85 E-value=1e-20 Score=150.70 Aligned_cols=118 Identities=23% Similarity=0.380 Sum_probs=101.8
Q ss_pred HHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCC
Q 026558 37 APLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 37 ~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~ 112 (237)
.+.+-..... .+.+|||+|||||..+..+++.. .++++|+|+|+.|++.|+++... ..+++|+.+|+.++| |+++
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~ 118 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDN 118 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCC
Confidence 4444443332 23499999999999999999874 45999999999999999999963 235999999999999 9999
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
+||+|.++..|+++ .+....|++++|+|||||++++..+..|.
T Consensus 119 sFD~vt~~fglrnv-------~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 119 SFDAVTISFGLRNV-------TDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred ccCEEEeeehhhcC-------CCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99999999999999 89999999999999999999999987764
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.83 E-value=1.7e-20 Score=150.65 Aligned_cols=107 Identities=27% Similarity=0.479 Sum_probs=84.8
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||||.++..+++.. ..+++|+|+|+.|++.|+++.. +..+++++++|+.++| +++++||+|++...++
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTCSFGLR 127 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEES-GG
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEHHhhHH
Confidence 499999999999999998863 3599999999999999999984 2348999999999999 9999999999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchh
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 163 (237)
.+ .+....+++++|+|||||++++..++.|..
T Consensus 128 n~-------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 128 NF-------PDRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp G--------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred hh-------CCHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 88 778899999999999999999999877643
No 3
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.82 E-value=2.8e-19 Score=141.76 Aligned_cols=140 Identities=17% Similarity=0.269 Sum_probs=109.4
Q ss_pred hhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--
Q 026558 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-- 91 (237)
Q Consensus 14 ~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-- 91 (237)
+||+..|....-.++-..+.+.+.+++.....+.+++|||+|||.|..+.+++++|+ .|+|+|+|+.+++.+.+...
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~ 79 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLT 79 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCC
Confidence 489999988754443234555577777664322334999999999999999999998 99999999999998644321
Q ss_pred ------------CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 92 ------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 92 ------------~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
...++++.++|+.+++....+.||.|+...+++++ +++....+++.+.++|+|||++++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-----~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 80 PTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIAL-----PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccC-----CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 12368899999998762224679999999999988 7888899999999999999987777653
No 4
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.81 E-value=2.6e-19 Score=133.83 Aligned_cols=155 Identities=23% Similarity=0.459 Sum_probs=117.5
Q ss_pred CCCCCCCChhhhHHHhccCCCCc--------eeecCCcC--hHHHHHhhCC-----CCCCcEEEEccCCchhHHHHHHcC
Q 026558 5 TTTQAYGEPWYWDNRYAHESGPF--------DWYQKYPS--LAPLIKLYVP-----SHHQRILIVGCGNSAFSEGMVDDG 69 (237)
Q Consensus 5 ~~~~~~~~~~~w~~~y~~~~~~~--------~~~~~~~~--~~~~l~~~~~-----~~~~~iLdlG~G~G~~~~~~~~~~ 69 (237)
.+.+.+++++||++.|..+-..| -|++.... +.+++...+. ....+|||||||+|.++..+++.+
T Consensus 10 l~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg 89 (227)
T KOG1271|consen 10 LGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG 89 (227)
T ss_pred ccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc
Confidence 46788999999999998773322 27763222 3333333222 222399999999999999999998
Q ss_pred CC-eEEEEeCCHHHHHHHHHHcCC--CCC-cEEEEccccccccccCCCccEEEeccccceec-cCCCChHHHHHHHHHHH
Q 026558 70 YE-DVVNVDISSVVIEAMMKKYSN--RPQ-LKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL-CGSNSRQNATQMLKEVW 144 (237)
Q Consensus 70 ~~-~~~~vD~s~~~~~~a~~~~~~--~~~-~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~-~~~~~~~~~~~~l~~~~ 144 (237)
+. ..+|+|+|+.+++.|+...+. .++ ++|.+.|+.+.. +..++||+|+..++++.+. |+......+.-++..+.
T Consensus 90 f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~ 168 (227)
T KOG1271|consen 90 FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVE 168 (227)
T ss_pred CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-ccccceeEEeecCceeeeecCCCCcccceeeehhhHh
Confidence 54 599999999999998877742 334 999999999875 7789999999999999885 33333334466899999
Q ss_pred HhcCCCcEEEEEEcCC
Q 026558 145 RVLKDKGVYILVTYGA 160 (237)
Q Consensus 145 ~~L~pgG~l~~~~~~~ 160 (237)
+.|+|||++++.+..-
T Consensus 169 ~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 169 KLLSPGGIFVITSCNF 184 (227)
T ss_pred hccCCCcEEEEEecCc
Confidence 9999999999987544
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.80 E-value=3.3e-19 Score=123.29 Aligned_cols=95 Identities=29% Similarity=0.569 Sum_probs=83.7
Q ss_pred EEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccCCC
Q 026558 52 LIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN 131 (237)
Q Consensus 52 LdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~ 131 (237)
||+|||+|..+..+++.+..+++++|+++.+++.++++... .++.+...|+.+++ +++++||+|++..+++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~-~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLP-FPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSS-S-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCc-cccccccccccccceeec-----
Confidence 89999999999999999545999999999999999999864 45569999999998 999999999999999998
Q ss_pred ChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 132 SRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 132 ~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
++...+++++.|+|||||++++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 8999999999999999999975
No 6
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.80 E-value=2.2e-18 Score=137.11 Aligned_cols=139 Identities=19% Similarity=0.287 Sum_probs=108.4
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS- 91 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~- 91 (237)
.+||+..|......+.-..+.+.+.+.+.....+.+++|||+|||.|..+.+++++|+ +|+|+|+|+.+++.+.....
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l 81 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGL 81 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCC
Confidence 6799999998765443344555566666543323334999999999999999999997 99999999999998753221
Q ss_pred -------------CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 92 -------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 92 -------------~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...++++.++|+.++.....+.||.|+...+++++ +++....+++.+.++|+|||++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l-----~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 82 TPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIAL-----PEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhC-----CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 12468889999998862233689999999999988 78889999999999999999766644
No 7
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=7.1e-18 Score=132.62 Aligned_cols=129 Identities=20% Similarity=0.361 Sum_probs=99.0
Q ss_pred CChhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc
Q 026558 11 GEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 11 ~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~ 90 (237)
+++.||...|.... +.+.+.+.+.. .++ .+|||+|||+|..+..+++++. +++|+|+|+.+++.++++.
T Consensus 4 ~~~~~~~~~~~~~~-------~~~~l~~~l~~--~~~-~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~ 72 (197)
T PRK11207 4 RDENYFTDKYGLTR-------THSEVLEAVKV--VKP-GKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIK 72 (197)
T ss_pred chHHHHHHhcCCCC-------ChHHHHHhccc--CCC-CcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 34567776665331 23333333331 223 4999999999999999999876 9999999999999999876
Q ss_pred C--CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 91 S--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 91 ~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. +..++.+.+.|+.+++ + .++||+|++..+++++ ++.....+++++.++|+|||.+++..
T Consensus 73 ~~~~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~~~-----~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 73 AAENLDNLHTAVVDLNNLT-F-DGEYDFILSTVVLMFL-----EAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred HHcCCCcceEEecChhhCC-c-CCCcCEEEEecchhhC-----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4 2346888889988775 4 4679999999999887 56688999999999999999976654
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.78 E-value=4.6e-18 Score=139.26 Aligned_cols=106 Identities=19% Similarity=0.349 Sum_probs=92.9
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcC-----CCCCcEEEEccccccccccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYS-----NRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~-----~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.+|||+|||+|.++..+++. + ..+++|+|+|++|++.|+++.. ...+++++++|+.+++ +++++||+|++..
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~~~ 153 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITMGY 153 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEEec
Confidence 49999999999999988876 3 2489999999999999987753 2347899999999988 8889999999999
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
+++++ .+...+++++.|+|||||++++.++..+.
T Consensus 154 ~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 154 GLRNV-------VDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred ccccC-------CCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 99988 78899999999999999999999876643
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=5.4e-18 Score=121.17 Aligned_cols=103 Identities=27% Similarity=0.388 Sum_probs=85.4
Q ss_pred CcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHc---CCCCCcEEEEccc-cccccccCCCccEEEecc-c
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKY---SNRPQLKYIKMDV-RQMDEFQTGSFDSVVDKG-T 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~---~~~~~~~~~~~d~-~~~~~~~~~~fD~I~~~~-~ 122 (237)
.+|||||||+|.++..+++. ...+++|+|+|+.+++.|+++. ...++++++++|+ .... ..+.||+|++.. +
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD--FLEPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--TSSCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--cCCCCCEEEECCCc
Confidence 38999999999999999993 3459999999999999999998 2346999999999 3332 356799999998 5
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++++ .+.+....+++.+.+.|+|||++++.+
T Consensus 81 ~~~~----~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFL----LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGC----CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc----cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5544 133678889999999999999999875
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.77 E-value=1.8e-18 Score=141.37 Aligned_cols=135 Identities=19% Similarity=0.341 Sum_probs=103.5
Q ss_pred HHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---C
Q 026558 17 DNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---R 93 (237)
Q Consensus 17 ~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~ 93 (237)
+..|.+..+.+...-.+..+..++......+ .+|||+|||+|.++..+++.+. +++++|+|+.+++.|+++... .
T Consensus 15 ~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~-~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~ 92 (255)
T PRK11036 15 RNIYGTTKGQIRQAILWQDLDRLLAELPPRP-LRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVS 92 (255)
T ss_pred HhccCCCccHHHHHHHHHHHHHHHHhcCCCC-CEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc
Confidence 4455544433221111233445555544333 4999999999999999999875 999999999999999998753 2
Q ss_pred CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 94 PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 94 ~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++++++++|+.+++.+..++||+|++..+++++ .+...+++++.++|+|||++++..+..
T Consensus 93 ~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 93 DNMQFIHCAAQDIAQHLETPVDLILFHAVLEWV-------ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred cceEEEEcCHHHHhhhcCCCCCEEEehhHHHhh-------CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 478999999988754567899999999999998 677899999999999999998876543
No 11
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.76 E-value=2.6e-17 Score=130.62 Aligned_cols=144 Identities=16% Similarity=0.205 Sum_probs=118.7
Q ss_pred CCCChhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 026558 9 AYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (237)
Q Consensus 9 ~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~ 88 (237)
+..+.+||+++|.+....|+-..+.+.+.+.+.......+.+||++|||.|....+++++|+ .|+|+|+|+.+++.+.+
T Consensus 5 ~~~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 5 ETNNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFS 83 (226)
T ss_pred ccCCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHH
Confidence 34567799999999988887666666676777665543334999999999999999999998 89999999999999866
Q ss_pred HcC--------------CCCCcEEEEcccccccc--ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcE
Q 026558 89 KYS--------------NRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGV 152 (237)
Q Consensus 89 ~~~--------------~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (237)
... ...++++.++|+.+++. -..+.||+|+...++.++ +++...++++.+.++|+|||.
T Consensus 84 e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-----pp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 84 QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL-----PNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred HcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC-----CHHHHHHHHHHHHHHhCCCcE
Confidence 321 12478999999999862 123689999999999999 889999999999999999999
Q ss_pred EEEEEc
Q 026558 153 YILVTY 158 (237)
Q Consensus 153 l~~~~~ 158 (237)
++++++
T Consensus 159 llll~~ 164 (226)
T PRK13256 159 ILLLVM 164 (226)
T ss_pred EEEEEE
Confidence 988876
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.76 E-value=1.4e-17 Score=136.63 Aligned_cols=118 Identities=16% Similarity=0.322 Sum_probs=97.9
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCcc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
...++......+..+|||+|||+|..+..+++....+++|+|+|+.+++.|+++.....++.+.++|+.+.+ +++++||
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~-~~~~~FD 119 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD-FPENTFD 119 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC-CCCCCeE
Confidence 455665543333349999999999999988875445999999999999999998865567999999998876 7788999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+|++..+++|+ +..+...+++++.++|+|||.+++..+.
T Consensus 120 ~V~s~~~l~h~-----~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 120 MIYSRDAILHL-----SYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEEhhhHHhC-----CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99998888777 4458899999999999999999998753
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.76 E-value=8.5e-18 Score=142.64 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=90.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||||||+|.++..+++....+++|+|+|+.+++.++++... ..+++++++|+.+++ +++++||+|++..+++|
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~~~~h 198 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSMESGEH 198 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECCchhc
Confidence 48999999999999999987545999999999999999987632 247899999999887 88899999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+++++.++|+|||.+++.++
T Consensus 199 ~-------~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 199 M-------PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8 6788999999999999999999774
No 14
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.76 E-value=3.5e-18 Score=134.16 Aligned_cols=103 Identities=25% Similarity=0.386 Sum_probs=91.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||-|.++..+++.|. .|+|+|+++.+++.|+.+... .-++++.+..+.++. ...++||+|+|..+++|+
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEHv- 137 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEHV- 137 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHcc-
Confidence 4999999999999999999995 999999999999999988753 235778888888876 445899999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.++..+++.+.+.+||||.+++.|...
T Consensus 138 ------~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 138 ------PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ------CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 888999999999999999999988654
No 15
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.74 E-value=1.3e-17 Score=132.44 Aligned_cols=139 Identities=24% Similarity=0.400 Sum_probs=110.7
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS- 91 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~- 91 (237)
.++|++.|.+..-.|+.....+.+.+++.....+.+.+||..|||.|....+++++|+ +|+|+|+|+.+++.+.+...
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~ 81 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNL 81 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhcc
Confidence 7899999999988888777777888888885444445999999999999999999998 99999999999999854321
Q ss_pred -------------CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 92 -------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 92 -------------~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...++++.++|+.+++.-..++||+|+...++..+ +++.+.++.+.+.++|+|||.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al-----pp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 82 EPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL-----PPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp EEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS------GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred CCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC-----CHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 11357899999999873334689999999999998 78999999999999999999955554
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.73 E-value=1.7e-17 Score=138.93 Aligned_cols=103 Identities=17% Similarity=0.304 Sum_probs=91.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||||||+|.++..+++.+. +++|+|+++++++.|+++... ..++.++++|+.+++ +..++||+|++..+++|
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhhHHHh
Confidence 3899999999999999998765 999999999999999987642 237899999998887 66789999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+ .+...+++++.++|+|||.+++.+...
T Consensus 211 v-------~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 211 V-------ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 9 788899999999999999999988654
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.73 E-value=1.1e-16 Score=125.65 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=84.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++... .-++.+...|+...+ + .++||+|++..+++++
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~~~- 107 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA-L-NEDYDFIFSTVVFMFL- 107 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-c-cCCCCEEEEecccccC-
Confidence 4999999999999999999876 999999999999999887642 124677777876554 4 3579999999999887
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+..+...+++++.++|+|||++++..
T Consensus 108 ----~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 108 ----QAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ----CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 55678899999999999999976654
No 18
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.73 E-value=4.5e-17 Score=132.89 Aligned_cols=100 Identities=23% Similarity=0.364 Sum_probs=89.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.. ...++++|+..++ +++++||+|+++.++++.
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~-~~~~~fD~V~s~~~l~~~-- 116 (251)
T PRK10258 44 THVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA---ADHYLAGDIESLP-LATATFDLAWSNLAVQWC-- 116 (251)
T ss_pred CeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCc-CCCCcEEEEEECchhhhc--
Confidence 4899999999999999988764 99999999999999998863 3578899998887 778899999999999988
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+...++.++.++|+|||.+++.++..
T Consensus 117 -----~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 -----GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred -----CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 778899999999999999999987654
No 19
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=1.9e-17 Score=134.34 Aligned_cols=108 Identities=21% Similarity=0.347 Sum_probs=94.5
Q ss_pred CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCC-CcEEEEccccccccccCCCccEEEeccc
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRP-QLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~-~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
+++.+|||||||+|.+++.+++....+|+|+++|+++.+.+++++. +.. ++++...|..++. +.||.|+|.+.
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----e~fDrIvSvgm 146 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----EPFDRIVSVGM 146 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----cccceeeehhh
Confidence 3334999999999999999999864599999999999999999874 333 7889998988885 34999999999
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
++|+ +.+....+++.+.++|+|||++++.+...+.
T Consensus 147 fEhv-----g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 147 FEHV-----GKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHh-----CcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999 7788999999999999999999998876654
No 20
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=4.4e-17 Score=133.22 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=91.2
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
+..++.........+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++ +++++++|+.+++ +.++|
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~--~~~~f 90 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK--PKPDT 90 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC--CCCCc
Confidence 4556665544444599999999999999999874 34899999999999999874 5789999998764 45789
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|+|+++.+++++ .+...++++++++|+|||.+++...
T Consensus 91 D~v~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAALQWV-------PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhhhhC-------CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 999999999998 6778999999999999999988753
No 21
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.73 E-value=2.6e-17 Score=125.97 Aligned_cols=140 Identities=19% Similarity=0.329 Sum_probs=102.3
Q ss_pred CChhhhHHHhccCCCCceeecC-CcC--hHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 026558 11 GEPWYWDNRYAHESGPFDWYQK-YPS--LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM 86 (237)
Q Consensus 11 ~~~~~w~~~y~~~~~~~~~~~~-~~~--~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a 86 (237)
++.++|++.+... +.|..... |+. ....+...++.+. .++||+|||.|.++..++.++. +++++|+|+.+++.|
T Consensus 4 ~~~~~l~~~la~~-DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~A 81 (201)
T PF05401_consen 4 DNYQLLNRELAND-DPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARA 81 (201)
T ss_dssp SHHHHHHHHHTSS-SGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHH
T ss_pred cHHHHHHHHhCCC-CCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHH
Confidence 3456777766644 55543211 222 1233443334443 5999999999999999999974 999999999999999
Q ss_pred HHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 87 MKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+++..+.+++++.+.|+.+.. +.++||+|+++.+++++ .+.++...+++.+...|+|||.+++-+.
T Consensus 82 r~Rl~~~~~V~~~~~dvp~~~--P~~~FDLIV~SEVlYYL----~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 82 RERLAGLPHVEWIQADVPEFW--PEGRFDLIVLSEVLYYL----DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-GGGS----SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHhcCCCCCeEEEECcCCCCC--CCCCeeEEEEehHhHcC----CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999988889999999998763 78999999999999998 4457889999999999999999999775
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.72 E-value=6.4e-17 Score=122.09 Aligned_cols=103 Identities=24% Similarity=0.488 Sum_probs=88.8
Q ss_pred CcEEEEccCCchhHHHHHH-cC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVD-DG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~-~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++ .+ ..+++|+|+|+++++.|+++++ +.++++|.++|+.+++. ++ +.||+|++..++
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l 83 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVL 83 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTG
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCch
Confidence 3999999999999999994 33 3599999999999999999763 44589999999999652 22 799999999999
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+++ .+...+++++.++|+++|++++....
T Consensus 84 ~~~-------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 84 HHF-------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGT-------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhc-------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 988 88889999999999999999998865
No 23
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.72 E-value=9e-17 Score=124.22 Aligned_cols=129 Identities=22% Similarity=0.386 Sum_probs=95.5
Q ss_pred ChhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 12 ~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+++||...|..+... +.+.+.+.. + ++ +++||||||.|+.+.+++++|+ .|+++|+|+.+++.+++...
T Consensus 5 ~~~y~~kky~~~~~h-------s~v~~a~~~-~-~~-g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~ 73 (192)
T PF03848_consen 5 PEDYFHKKYGLTPTH-------SEVLEAVPL-L-KP-GKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAE 73 (192)
T ss_dssp STTHHHHHHTB-----------HHHHHHCTT-S--S-SEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCc-------HHHHHHHhh-c-CC-CcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHh
Confidence 456887777766222 223333221 1 23 4999999999999999999998 99999999999999887663
Q ss_pred -CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 92 -NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 92 -~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..-.++..+.|+.+.. + ++.||+|++..+++++ .++....+++.+...++|||++++.++
T Consensus 74 ~~~l~i~~~~~Dl~~~~-~-~~~yD~I~st~v~~fL-----~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 74 EEGLDIRTRVADLNDFD-F-PEEYDFIVSTVVFMFL-----QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp HTT-TEEEEE-BGCCBS---TTTEEEEEEESSGGGS------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hcCceeEEEEecchhcc-c-cCCcCEEEEEEEeccC-----CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 2235888999998876 5 4689999998889888 778889999999999999999888654
No 24
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.72 E-value=2.9e-17 Score=126.25 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=101.0
Q ss_pred CcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC
Q 026558 33 YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 111 (237)
.....+++.........+|.|||||+|..+..++++. .+.++|+|.|++|++.|+++. ++++|..+|+.++. +.
T Consensus 16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~--p~ 90 (257)
T COG4106 16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK--PE 90 (257)
T ss_pred cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--CC
Confidence 4456777776655555699999999999999999997 459999999999999999998 78999999999996 67
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...|+++++.+++++ .+...+|..+...|.|||.+.++..
T Consensus 91 ~~~dllfaNAvlqWl-------pdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 91 QPTDLLFANAVLQWL-------PDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred Cccchhhhhhhhhhc-------cccHHHHHHHHHhhCCCceEEEECC
Confidence 899999999999999 8899999999999999999998764
No 25
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.71 E-value=3.7e-17 Score=114.87 Aligned_cols=95 Identities=31% Similarity=0.574 Sum_probs=80.9
Q ss_pred EEEEccCCchhHHHHHHcC----CCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEec-cccc
Q 026558 51 ILIVGCGNSAFSEGMVDDG----YEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDK-GTLD 124 (237)
Q Consensus 51 iLdlG~G~G~~~~~~~~~~----~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~-~~l~ 124 (237)
|||+|||+|..+..+.+.. ..+++|+|+|+++++.++++... ..++++++.|+.+++ +..++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-FSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH-HHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc-ccCCCeeEEEEcCCccC
Confidence 7999999999999998874 25999999999999999999842 248999999999987 678899999995 4599
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKG 151 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG 151 (237)
|+ +++....+++++.++|+|||
T Consensus 80 ~~-----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL-----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS-----SHHHHHHHHHHHHHTEEEEE
T ss_pred CC-----CHHHHHHHHHHHHHHhCCCC
Confidence 88 88899999999999999998
No 26
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.71 E-value=2.3e-16 Score=127.11 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=90.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.++++.. +.++++++++|+.+++ ++.++||+|++..+++
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIGFGLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEecccc
Confidence 499999999999999998763 3499999999999999998874 2357899999998876 7778999999999998
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
++ .+...+++++.++|+|||.+++.+...+
T Consensus 126 ~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 126 NV-------PDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred cC-------CCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 88 6778899999999999999998876544
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.71 E-value=1.2e-16 Score=125.99 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=85.1
Q ss_pred CcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|..+..+++. +..+++|+|+|+.+++.|+++. +++.+.++|+.+ + +++++||+|++..+++|+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~-~~~~sfD~V~~~~vL~hl- 118 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-P-FKDNFFDLVLTKGVLIHI- 118 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-C-CCCCCEEEEEECChhhhC-
Confidence 38999999999999999886 3459999999999999999876 467888999887 5 778899999999999998
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+++....+++++.++++ +.+++..+..
T Consensus 119 ----~p~~~~~~l~el~r~~~--~~v~i~e~~~ 145 (204)
T TIGR03587 119 ----NPDNLPTAYRELYRCSN--RYILIAEYYN 145 (204)
T ss_pred ----CHHHHHHHHHHHHhhcC--cEEEEEEeeC
Confidence 56788999999999984 6777766433
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=2.1e-16 Score=129.50 Aligned_cols=110 Identities=15% Similarity=0.300 Sum_probs=92.0
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
...++......+..+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++. +++.+..+|+.++. +..+|
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~--~~~~f 94 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ--PPQAL 94 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC--CCCCc
Confidence 3455554433333599999999999999998874 359999999999999999986 56889999998764 45689
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+|+++.+++++ .+...+++++.++|+|||.+++..
T Consensus 95 D~v~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 95 DLIFANASLQWL-------PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cEEEEccChhhC-------CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 999999999998 677899999999999999998865
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.70 E-value=2.4e-16 Score=128.22 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=120.4
Q ss_pred hhCCCCCCcEEEEccCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCcc
Q 026558 42 LYVPSHHQRILIVGCGNSAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 42 ~~~~~~~~~iLdlG~G~G~~~~~~~~~---~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
....++. +|||+|||+|..+..+++. ...+++|+|+|+.|++.|++++.. ..+++++++|+.+.+ + ..+|
T Consensus 52 ~~~~~~~-~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~D 127 (247)
T PRK15451 52 RFVQPGT-QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I--ENAS 127 (247)
T ss_pred HhCCCCC-EEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-C--CCCC
Confidence 3344444 9999999999999888773 235999999999999999999852 237899999998876 3 4599
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc-hhh-hhcccCCCCceEEE--EEeccceecccCC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP-IYR-LGMLRDSCSWNIKL--HVIEKLVVEEKSG 191 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-~~~-~~~~~~~~~w~~~~--~~~~~~~~~~~~~ 191 (237)
+|+++.+++++ +......++++++++|+|||.+++.+...+ ... ..... ..|.... ........... .
T Consensus 128 ~vv~~~~l~~l-----~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~--~~~~~~~~~~g~s~~ei~~~-~ 199 (247)
T PRK15451 128 MVVLNFTLQFL-----EPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLF--NMHHDFKRANGYSELEISQK-R 199 (247)
T ss_pred EEehhhHHHhC-----CHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHH--HHHHHHHHHcCCCHHHHHHH-H
Confidence 99999999988 556678899999999999999999763221 100 01000 0010000 00000000000 0
Q ss_pred CCCcccccCcccCCCCCchhhhcCCCCCceE------EEEEecCCC
Q 026558 192 HPIWELTNPVPLENDGRSVEELLGKNPDVHY------IYVCTKDES 231 (237)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~yv~~k~~~ 231 (237)
........|.+.....++..+.+|..+.+.| .|+|+|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k~~~ 245 (247)
T PRK15451 200 SMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKAED 245 (247)
T ss_pred HHHHhhcccCCHHHHHHHHHHcCchhHHHHHHHHhHHHHhheeccc
Confidence 0111234567777788888888998888877 688988764
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.69 E-value=2.9e-16 Score=139.27 Aligned_cols=114 Identities=20% Similarity=0.335 Sum_probs=94.9
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCcc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..++.........+|||+|||+|..+..+++....+++|+|+|+.+++.|+++..+. .++.+.++|+...+ +++++||
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 334 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFD 334 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEE
Confidence 334444333333499999999999999888865459999999999999999887542 47899999998876 7778999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+|++..+++|+ .+...+++++.++|+|||.+++.++
T Consensus 335 ~I~s~~~l~h~-------~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 335 VIYSRDTILHI-------QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEECCccccc-------CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99999999999 7788999999999999999998865
No 31
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.69 E-value=5.8e-17 Score=123.82 Aligned_cols=106 Identities=25% Similarity=0.446 Sum_probs=89.8
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-cccccCCCccE
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDS 116 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~ 116 (237)
++|...++++. +|||||||.|.++..+.+....+..|+|++++.+..|.++ .+.++++|+.+ +..|++++||+
T Consensus 5 ~~I~~~I~pgs-rVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 5 QIIAEWIEPGS-RVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHHcCCCC-EEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCccE
Confidence 45667788887 9999999999999999886556999999999999999888 57899999976 44589999999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+.+.+++++ ..+..+|+++.|+ |.-.+++++.
T Consensus 79 VIlsqtLQ~~-------~~P~~vL~EmlRV----gr~~IVsFPN 111 (193)
T PF07021_consen 79 VILSQTLQAV-------RRPDEVLEEMLRV----GRRAIVSFPN 111 (193)
T ss_pred EehHhHHHhH-------hHHHHHHHHHHHh----cCeEEEEecC
Confidence 9999999999 8999999999988 4444555444
No 32
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.69 E-value=6.3e-16 Score=128.45 Aligned_cols=101 Identities=20% Similarity=0.300 Sum_probs=86.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|||+|||+|..+..+++.+. +++|+|+|+.+++.++++... ..++++...|+.... + +++||+|++..+++++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~-~~~fD~I~~~~vl~~l- 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-I-QEEYDFILSTVVLMFL- 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-c-cCCccEEEEcchhhhC-
Confidence 3999999999999999999876 999999999999999988742 236788888887764 3 6789999999999987
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.+....+++++.++|+|||++++..
T Consensus 198 ----~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 ----NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred ----CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 56788899999999999999977654
No 33
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.69 E-value=2e-15 Score=117.23 Aligned_cols=121 Identities=15% Similarity=0.178 Sum_probs=93.2
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEec
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
++++ .+|||+|||+|..+..++... ..+++++|+++.+++.|+++.+ +..+++++++|+.+++ . .++||+|+++
T Consensus 43 l~~g-~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~-~~~fDlV~~~ 119 (187)
T PRK00107 43 LPGG-ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q-EEKFDVVTSR 119 (187)
T ss_pred cCCC-CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-CCCccEEEEc
Confidence 3444 499999999999999888643 3599999999999999998874 3346999999998876 4 6789999987
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKL 178 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~~~ 178 (237)
. + .....+++.+.+.|+|||++++............+....+|.+..
T Consensus 120 ~----~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 120 A----V-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEE 166 (187)
T ss_pred c----c-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEee
Confidence 4 2 445789999999999999999987554444444443444665443
No 34
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.68 E-value=6.2e-16 Score=121.79 Aligned_cols=124 Identities=15% Similarity=0.252 Sum_probs=102.4
Q ss_pred HHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcC-------CCeEEEEeCCHHHHHHHHHHcCC-----CCCcEEEEccc
Q 026558 37 APLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDG-------YEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDV 103 (237)
Q Consensus 37 ~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~-------~~~~~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~ 103 (237)
.+++-..+.+.. .++||++||||.++..+.++- ..+|+.+||||+|++.++++... ...+.++.+|+
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 444444444444 499999999999999888752 25899999999999999999832 23488999999
Q ss_pred cccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch-hhhhcc
Q 026558 104 RQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI-YRLGML 168 (237)
Q Consensus 104 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-~~~~~~ 168 (237)
.++| |++.+||..++.+.+... .++.+.+++++|+|||||++.+..++... ....++
T Consensus 169 E~Lp-Fdd~s~D~yTiafGIRN~-------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f 226 (296)
T KOG1540|consen 169 EDLP-FDDDSFDAYTIAFGIRNV-------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWF 226 (296)
T ss_pred ccCC-CCCCcceeEEEecceecC-------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHH
Confidence 9999 999999999999988887 88899999999999999999999987755 344554
No 35
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.68 E-value=6.4e-16 Score=130.02 Aligned_cols=101 Identities=25% Similarity=0.337 Sum_probs=86.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHH--cC-CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK--YS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~--~~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
++|||||||+|.++..+++.+...|+|+|+|+.++..++.. .. ...++.++.+|+.+++ + .+.||+|+|..+++|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-A-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-C-cCCcCEEEECChhhc
Confidence 49999999999999999998866899999999998765432 22 2357899999999987 5 788999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. .+...++++++++|+|||.+++.+.
T Consensus 202 ~-------~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 202 R-------RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred c-------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 8 7788999999999999999998653
No 36
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.68 E-value=4e-16 Score=118.38 Aligned_cols=110 Identities=29% Similarity=0.559 Sum_probs=88.0
Q ss_pred cChHHHHHhhCC--CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC
Q 026558 34 PSLAPLIKLYVP--SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 34 ~~~~~~l~~~~~--~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 111 (237)
..+.+.+..+.+ ....+|||+|||+|.++..+++.+. +++|+|+++.+++. .+......+..... .++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~-~~~ 76 (161)
T PF13489_consen 7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--------RNVVFDNFDAQDPP-FPD 76 (161)
T ss_dssp HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--------TTSEEEEEECHTHH-CHS
T ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--------hhhhhhhhhhhhhh-ccc
Confidence 345556665552 3334999999999999999988887 99999999999988 23344444444443 568
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++||+|++..+++|+ .+...+++++.++|+|||++++.+...
T Consensus 77 ~~fD~i~~~~~l~~~-------~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 77 GSFDLIICNDVLEHL-------PDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SSEEEEEEESSGGGS-------SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cchhhHhhHHHHhhc-------ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 899999999999999 789999999999999999999998654
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.68 E-value=3.6e-16 Score=128.32 Aligned_cols=104 Identities=21% Similarity=0.337 Sum_probs=84.2
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||||||+|.++..++++..++|+|+.+|+++.+.+++++... ..+++...|..+++ .+||.|++..+++|
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----~~fD~IvSi~~~Eh 139 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----GKFDRIVSIEMFEH 139 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SEEEEESEGGG
T ss_pred CEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC----CCCCEEEEEechhh
Confidence 499999999999999999984359999999999999999998532 36889999998876 39999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+ +.++...+++.+.++|+|||++++.+...+
T Consensus 140 v-----g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 140 V-----GRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp T-----CGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred c-----ChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 9 778899999999999999999998765443
No 38
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.67 E-value=1.1e-15 Score=123.93 Aligned_cols=105 Identities=16% Similarity=0.272 Sum_probs=88.7
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC---CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG---YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~---~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
.++. +|||+|||+|.++..+++.. ..+++|+|+|+.|++.|++++.. ..+++++++|+.+.+ + ..+|+|+
T Consensus 52 ~~~~-~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~d~v~ 127 (239)
T TIGR00740 52 TPDS-NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-I--KNASMVI 127 (239)
T ss_pred CCCC-EEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-C--CCCCEEe
Confidence 3444 89999999999999998752 35899999999999999998753 236899999998876 4 3589999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+..+++++ +..+...+++++.++|+|||.+++...
T Consensus 128 ~~~~l~~~-----~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eecchhhC-----CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99999988 556788999999999999999999864
No 39
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.67 E-value=7.9e-16 Score=128.35 Aligned_cols=101 Identities=24% Similarity=0.313 Sum_probs=84.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHH---HcCCCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK---KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~---~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..++..+...++|+|+|+.++..++. ......++.+..+++.+++ . ...||+|++.++++|
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~-~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-E-LYAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-C-CCCcCEEEEcchhhc
Confidence 4999999999999999988876589999999999876432 2233357788888888886 3 358999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+|++++++|+|||.+++.+.
T Consensus 201 ~-------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 201 R-------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred c-------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 8 7788999999999999999998764
No 40
>PRK05785 hypothetical protein; Provisional
Probab=99.67 E-value=7.2e-16 Score=123.66 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=78.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||||.++..+++....+++|+|+|++|++.|+++. .++++|+.+++ +++++||+|++..+++++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp-~~d~sfD~v~~~~~l~~~-- 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALP-FRDKSFDVVMSSFALHAS-- 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCC-CCCCCEEEEEecChhhcc--
Confidence 499999999999999998874249999999999999998763 45788999988 889999999999999988
Q ss_pred CCCChHHHHHHHHHHHHhcCCC
Q 026558 129 GSNSRQNATQMLKEVWRVLKDK 150 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pg 150 (237)
.+....++++.|+|+|.
T Consensus 124 -----~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 124 -----DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred -----CCHHHHHHHHHHHhcCc
Confidence 78899999999999994
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.66 E-value=1.2e-15 Score=123.13 Aligned_cols=102 Identities=25% Similarity=0.453 Sum_probs=90.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++++.. +++.++.+|+.+.+ +++++||+|++..++++.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~~~- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLP-LEDSSFDLIVSNLALQWC- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCC-CCCCceeEEEEhhhhhhc-
Confidence 489999999999999999886 3478999999999999998875 37889999999887 778899999999999988
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+...+++++.++|+|||.+++.++..
T Consensus 112 ------~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 112 ------DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred ------cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 778899999999999999999877544
No 42
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.66 E-value=1.6e-15 Score=117.44 Aligned_cols=117 Identities=9% Similarity=0.129 Sum_probs=87.4
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..++..+ ..+++++|+|+.+++.++++.+ +..+++++++|+.++. ..++||+|+++. ++
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--~~~~fD~I~s~~-~~- 119 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--HEEQFDVITSRA-LA- 119 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc--ccCCccEEEehh-hh-
Confidence 499999999999999988765 3489999999999999888764 2347999999998864 367899999975 33
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcc-cCCCCceEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML-RDSCSWNIKL 178 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-~~~~~w~~~~ 178 (237)
+...+++.+.++|+|||++++............+ .....|.+..
T Consensus 120 ---------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 120 ---------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred ---------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceE
Confidence 3466888899999999999987644433333333 2333444443
No 43
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.66 E-value=1.8e-16 Score=125.48 Aligned_cols=100 Identities=29% Similarity=0.474 Sum_probs=85.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC----C----cEEEEccccccccccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP----Q----LKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~----~----~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
.+|||+|||+|.++..+++.|. .|+|+|+++.+++.|++.....| + +++.+.|+.... +.||+|+|.
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cccceeeeH
Confidence 3799999999999999999985 99999999999999999964322 2 445555665553 459999999
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+++|+ .++..+++.+.+.|+|||++++.+..+
T Consensus 166 evleHV-------~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHV-------KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHH-------hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 999999 999999999999999999999988544
No 44
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.64 E-value=2.8e-15 Score=121.07 Aligned_cols=104 Identities=21% Similarity=0.423 Sum_probs=90.4
Q ss_pred CcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+..+++.+. .+++++|+++.+++.+++++.. ..++.+..+|+.+.+ +..+.||+|++..++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEeccc
Confidence 4999999999999999988763 6999999999999999998753 246889999998876 667889999999898
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++. .+...+++++.++|+|||.+++.+...
T Consensus 132 ~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 132 RNV-------PDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccC-------CCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 887 678899999999999999998876544
No 45
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.64 E-value=2.9e-15 Score=115.59 Aligned_cols=161 Identities=20% Similarity=0.266 Sum_probs=111.6
Q ss_pred CCCCCCCCCChh-hhHHHhccCCC---CceeecCCcChHHHHHhhCCCC-CCcEEEEccCCchhHHHHHHcCCCeEEEEe
Q 026558 3 MGTTTQAYGEPW-YWDNRYAHESG---PFDWYQKYPSLAPLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDGYEDVVNVD 77 (237)
Q Consensus 3 ~~~~~~~~~~~~-~w~~~y~~~~~---~~~~~~~~~~~~~~l~~~~~~~-~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD 77 (237)
|+.+|++-.+.+ ||+......-. .+..++.-...+.+.-..++.+ +.-|||||||+|..+..+.+.|+ ..+|+|
T Consensus 1 m~~rPEh~~PpelfYnd~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvD 79 (270)
T KOG1541|consen 1 MSVRPEHGAPPELFYNDTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVD 79 (270)
T ss_pred CCcCccccCCcceeechhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeec
Confidence 566777766655 44433332211 1222222222222222233332 34899999999999999999986 999999
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec----cCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 78 ISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL----CGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 78 ~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
||+.|++.|.++-- .-+++.+|+-+..+|..+.||-+++...++++. +++++...+..++..++.+|++|++.
T Consensus 80 iSpsML~~a~~~e~---egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~ra 156 (270)
T KOG1541|consen 80 ISPSMLEQAVEREL---EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARA 156 (270)
T ss_pred CCHHHHHHHHHhhh---hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCcee
Confidence 99999999997531 236788888764449999999999998887763 33456667788999999999999999
Q ss_pred EEEEcCCchhhhhc
Q 026558 154 ILVTYGAPIYRLGM 167 (237)
Q Consensus 154 ~~~~~~~~~~~~~~ 167 (237)
+++.+.........
T Consensus 157 V~QfYpen~~q~d~ 170 (270)
T KOG1541|consen 157 VLQFYPENEAQIDM 170 (270)
T ss_pred EEEecccchHHHHH
Confidence 99998776554333
No 46
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.63 E-value=7.4e-17 Score=112.85 Aligned_cols=95 Identities=24% Similarity=0.495 Sum_probs=63.3
Q ss_pred EEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCC--CcEEEEccccccccc-cCCCccEEEeccccceec
Q 026558 52 LIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRP--QLKYIKMDVRQMDEF-QTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 52 LdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~-~~~~fD~I~~~~~l~~~~ 127 (237)
||+|||+|.++..+++.. ..+++++|+|+.+++.+++++.... +......+..+.... ..++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 799999999999998884 3499999999999988888875322 333444443333211 23699999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
++...+++++.++|+|||++
T Consensus 80 ------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ------S-HHHHHHHHTTT-TSS-EE
T ss_pred ------hhHHHHHHHHHHHcCCCCCC
Confidence 88899999999999999986
No 47
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.63 E-value=7e-15 Score=126.42 Aligned_cols=102 Identities=25% Similarity=0.419 Sum_probs=87.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||||||+|.++..+++....+++|+|+|+++++.|+++..+ .++++...|..++ .++||.|++..+++|+
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~-l~v~~~~~D~~~l----~~~fD~Ivs~~~~ehv-- 241 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG-LPVEIRLQDYRDL----NGQFDRIVSVGMFEHV-- 241 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-CeEEEEECchhhc----CCCCCEEEEeCchhhC--
Confidence 49999999999999999887545999999999999999999854 3577888887655 3689999999999988
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+..+...+++++.++|+|||++++.+...
T Consensus 242 ---g~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 242 ---GPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred ---ChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 55677899999999999999999987544
No 48
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.61 E-value=6.8e-15 Score=121.45 Aligned_cols=102 Identities=16% Similarity=0.280 Sum_probs=87.0
Q ss_pred CcEEEEccCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~-~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++. +. .+++++|+++.+++.|+++.. +..++++..+|+.+++ +++++||+|+++.+++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIISNCVIN 157 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEEcCccc
Confidence 39999999999988777664 32 379999999999999999863 3357889999998887 7778999999999998
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+. .+...++++++++|+|||++++...
T Consensus 158 ~~-------~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 158 LS-------PDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CC-------CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 77 6678899999999999999998764
No 49
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.60 E-value=8.2e-15 Score=120.14 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=84.4
Q ss_pred CcEEEEccCCch----hHHHHHHcC------CCeEEEEeCCHHHHHHHHHHcCC--------------------------
Q 026558 49 QRILIVGCGNSA----FSEGMVDDG------YEDVVNVDISSVVIEAMMKKYSN-------------------------- 92 (237)
Q Consensus 49 ~~iLdlG~G~G~----~~~~~~~~~------~~~~~~vD~s~~~~~~a~~~~~~-------------------------- 92 (237)
.+|+|+|||+|. +++.+++.+ ..+++|+|+|+.+++.|++..-.
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~ 180 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVK 180 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEC
Confidence 389999999996 444555532 23899999999999999986410
Q ss_pred ---CCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 93 ---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 93 ---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..++.|.+.|+.+.+ ++.++||+|+|.++++++ +......+++++.++|+|||.+++..
T Consensus 181 ~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf-----~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 181 PELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF-----DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred hHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC-----CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 126889999998876 567899999999999998 66778899999999999999998864
No 50
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.60 E-value=5.7e-15 Score=112.89 Aligned_cols=106 Identities=25% Similarity=0.310 Sum_probs=90.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcE-EEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLK-YIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~-~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
..|||+|||||..-.+.-.....+++++|.++.|-+.+.+.+.. ..++. |+.++..++++++++++|.|++..+|..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 47899999999886665544345999999999999999988843 23665 9999999999889999999999999887
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
. +++.+.|+++.|+|+|||++++......
T Consensus 158 v-------e~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 158 V-------EDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred c-------CCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 7 8999999999999999999999886553
No 51
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.60 E-value=2.1e-14 Score=114.76 Aligned_cols=107 Identities=27% Similarity=0.477 Sum_probs=92.2
Q ss_pred CCCcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
+..+|||+|||+|.++..+++... .+++++|+++.+++.++++.....++.+..+|+.+.+ +..+.||+|++...++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeeeeC
Confidence 334999999999999999988864 4899999999999999998763357899999998877 6677899999998888
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
++ .+...+++++.+.|+|||++++.....+
T Consensus 118 ~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 118 NV-------TDIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred Cc-------ccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 87 6788999999999999999998876443
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.60 E-value=3.8e-14 Score=109.81 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=85.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++.. ..+++++.+|+.+.. .++||+|+++.++++..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCCCCCc
Confidence 4899999999999999999876 899999999999999998742 236788888987653 45899999998876541
Q ss_pred cCC--------------CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGS--------------NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~--------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
... .+......+++++.++|+|||.+++.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 110 112235778999999999999998877544
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.60 E-value=4.2e-14 Score=110.35 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=77.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+ ..+++++|+++.+++.|+++.. +..+++++.+|+... + .++||+|++....++
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~--~-~~~~D~v~~~~~~~~ 109 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE--L-PGKADAIFIGGSGGN 109 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh--c-CcCCCEEEECCCccC
Confidence 499999999999999998875 3599999999999999998874 234688888887432 2 467999998765433
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+++.+.+.|+|||++++..
T Consensus 110 ----------~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 110 ----------LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ----------HHHHHHHHHHhcCCCeEEEEEE
Confidence 3668899999999999998865
No 54
>PRK08317 hypothetical protein; Provisional
Probab=99.60 E-value=1.8e-14 Score=116.20 Aligned_cols=102 Identities=25% Similarity=0.455 Sum_probs=88.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.. ...++.+...|+...+ ++.+.||+|++..++++
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-FPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC-CCCCCceEEEEechhhc
Confidence 499999999999999998864 3589999999999999998843 2357889999998876 67789999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+++++.++|+|||.+++...
T Consensus 100 ~-------~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 100 L-------EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred c-------CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 8 7788999999999999999988663
No 55
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.60 E-value=8.9e-15 Score=123.03 Aligned_cols=101 Identities=25% Similarity=0.303 Sum_probs=87.5
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.|+++... .+++++.+|+.+++ ++++.||+|++..+++++
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-~~i~~i~gD~e~lp-~~~~sFDvVIs~~~L~~~- 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIIEGDAEDLP-FPTDYADRYVSAGSIEYW- 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-cCCeEEeccHHhCC-CCCCceeEEEEcChhhhC-
Confidence 499999999999998887753 34899999999999999998642 57889999999887 778899999999999888
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+...+++++.++|+|||.+++...
T Consensus 192 ------~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 192 ------PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred ------CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 5667899999999999999987653
No 56
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.60 E-value=1.9e-14 Score=110.62 Aligned_cols=106 Identities=23% Similarity=0.378 Sum_probs=84.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+.. +++++|+++.+++.+++++.. ..+++++..|..+.. +.++||+|+++.+++.
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~--~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL--PDGKFDLIVSNPPFHA 110 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--CTTCEEEEEE---SBT
T ss_pred CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc--cccceeEEEEccchhc
Confidence 49999999999999999998753 799999999999999999852 234889999987764 4789999999988653
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
- ...+.....++++++.++|+|||.+++...
T Consensus 111 ~--~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 G--GDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp T--SHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c--cccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 2 112234678899999999999999977654
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.60 E-value=3.3e-14 Score=103.12 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=80.2
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++.. +..+++++..|+.........+||+|++....+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~- 99 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG- 99 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch-
Confidence 499999999999999999874 3589999999999999998864 235788888887653213346899999976443
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+++++.++|+|||.+++..
T Consensus 100 ---------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 ---------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ---------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 34689999999999999998865
No 58
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.60 E-value=6.1e-14 Score=118.75 Aligned_cols=105 Identities=18% Similarity=0.249 Sum_probs=84.2
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
++|||+|||+|.++..+++... .+++++|+|+.+++.++++++.. ...++...|+... ..++||+|+++.++|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD---IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---cCCCccEEEECCCccCC
Confidence 4899999999999999998753 48999999999999999987432 2456777777553 25789999999988752
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..........+++++.++|+|||.++++..
T Consensus 275 --~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 --IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred --ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 111235678999999999999999988763
No 59
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.59 E-value=7.8e-15 Score=117.65 Aligned_cols=100 Identities=18% Similarity=0.307 Sum_probs=86.5
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
+|||+|||+|..+..+++.. ..+++|+|+|+.+++.+++++.. ..++.+...|+...+ + .++||+|++..++++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-~-~~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-F-PDTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-C-CCCCCEeehHHHHHh
Confidence 79999999999999998875 35899999999999999998742 246889999987665 4 358999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+++++.++|+|||.+++.+.
T Consensus 80 ~-------~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 I-------KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred C-------CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 8 6788999999999999999998764
No 60
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.59 E-value=1.4e-14 Score=124.07 Aligned_cols=217 Identities=32% Similarity=0.481 Sum_probs=166.7
Q ss_pred CCCCCCCCChhhhHHHhccCC-CCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHH
Q 026558 4 GTTTQAYGEPWYWDNRYAHES-GPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVV 82 (237)
Q Consensus 4 ~~~~~~~~~~~~w~~~y~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~ 82 (237)
-.+.-.+++..||+.+|.... ..++|++.+..+...|...+.+..-++|.+|||...+...+.+.|+..++.+|+|+..
T Consensus 4 p~~~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~ 83 (482)
T KOG2352|consen 4 PQEQLSFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVV 83 (482)
T ss_pred cccccccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHH
Confidence 345678999999999999884 7799999999988888877655434899999999999999999998899999999999
Q ss_pred HHHHHHHc-CCCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChH---HHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 83 IEAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ---NATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 83 ~~~a~~~~-~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
++.+..+. ...+...+...|+..+. |++++||+|+..+.+++++++....- .....+.++.|++++||+++.+++
T Consensus 84 V~~m~~~~~~~~~~~~~~~~d~~~l~-fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 84 VAAMQVRNAKERPEMQMVEMDMDQLV-FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred HHHHHhccccCCcceEEEEecchhcc-CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99988887 45567889999999998 99999999999999999988775544 667789999999999999999987
Q ss_pred C--Cchhhh-hcccCCCCceEEEEEeccceecccCCCCCcccccCcccCCCCCchhhhcCCCCCceEEEEEecCC
Q 026558 159 G--APIYRL-GMLRDSCSWNIKLHVIEKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDE 230 (237)
Q Consensus 159 ~--~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~k~~ 230 (237)
. .|..+. .++-....|........+...- ...-+..+..+....+..+..+..|+++.++++.
T Consensus 163 ~~~vp~~r~~e~~~~~p~G~~~~~~~s~~~~l---------~~v~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g 228 (482)
T KOG2352|consen 163 VQVVPQGRKPEWLFGSPGGSKQMNVSSSGERL---------AIVALHRGQQYSTPQEDEVQDPLSPFRRQLDPKG 228 (482)
T ss_pred eeeccCCCCeeeeecCccchhhhhhhccCcce---------EEEEeccCccccchHHhhhccccccceeeccccc
Confidence 4 343322 2222233333333332221111 1233445555666667777888999999998876
No 61
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.59 E-value=1.5e-14 Score=119.40 Aligned_cols=104 Identities=26% Similarity=0.442 Sum_probs=82.5
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcC----CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDG----YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~----~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
.+...+.....+|||+|||+|.++..+++.. ...++|+|+|+.+++.|+++. +++.+.++|+.+++ +++++|
T Consensus 77 ~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp-~~~~sf 152 (272)
T PRK11088 77 LLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLP-FADQSL 152 (272)
T ss_pred HHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCC-CcCCce
Confidence 3444434333489999999999999988753 137899999999999999876 57899999999988 888999
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|++... ...++++.|+|+|||++++++...
T Consensus 153 D~I~~~~~--------------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 153 DAIIRIYA--------------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred eEEEEecC--------------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 99998532 113578999999999999987554
No 62
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.58 E-value=1.9e-14 Score=127.66 Aligned_cols=102 Identities=20% Similarity=0.300 Sum_probs=87.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc--cccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ--MDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~--~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.++..+++.+. +++|+|+++.+++.+++.....+++.++++|+.. ++ ++.++||+|++..+++++
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-ISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-CCCCCEEEEehhhhHHhC
Confidence 4899999999999999998864 9999999999999887655444678999999964 34 667899999999999998
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+......+++++.++|+|||++++..
T Consensus 117 -----~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 117 -----SDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred -----CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 45567899999999999999998864
No 63
>PLN03075 nicotianamine synthase; Provisional
Probab=99.58 E-value=1.2e-13 Score=113.52 Aligned_cols=105 Identities=12% Similarity=0.196 Sum_probs=84.5
Q ss_pred CCCcEEEEccCCchhHHHHH--HcC-CCeEEEEeCCHHHHHHHHHHcCC----CCCcEEEEccccccccccCCCccEEEe
Q 026558 47 HHQRILIVGCGNSAFSEGMV--DDG-YEDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~--~~~-~~~~~~vD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
++.+|+|||||.|.++..+. ... .++++|+|+++++++.|++.+.. ..+++|..+|+.+.. ...+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-cccCCcCEEEE
Confidence 44599999999885544433 333 34899999999999999999842 247999999998864 23478999999
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. +++++ ...+..++++++.+.|+|||.+++-..
T Consensus 202 ~-ALi~~-----dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 202 A-ALVGM-----DKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred e-ccccc-----ccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9 77776 557889999999999999999999873
No 64
>PRK06922 hypothetical protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=129.99 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=89.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc-ccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|..+..+++.. ..+++|+|+|+.|++.|+++... ..++.++++|+.+++. +++++||+|+++.++|+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~ 499 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHE 499 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHh
Confidence 399999999999998888754 35999999999999999988643 2467888999987653 56789999999999887
Q ss_pred eccCCC------ChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSN------SRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+++..+ +..+...++++++++|||||.+++.+.
T Consensus 500 L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 500 LFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 632211 346788999999999999999999763
No 65
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.58 E-value=1.7e-14 Score=103.85 Aligned_cols=108 Identities=25% Similarity=0.410 Sum_probs=86.0
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccc-cccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l~~ 125 (237)
+|||+|||+|.++..+++.+..+++|+|+++..++.++.++.. ..+++++++|+.+.. .++.++||+|+++.++..
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~ 82 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGP 82 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTS
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCcc
Confidence 8999999999999999999845999999999999999999852 247899999998865 366899999999988764
Q ss_pred eccC-CCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCG-SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.... .........+++++.++|+|||.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 83 RSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp BTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 3111 1122356789999999999999999876
No 66
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.57 E-value=2.5e-14 Score=112.89 Aligned_cols=112 Identities=18% Similarity=0.151 Sum_probs=84.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccc-ccccc-ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDV-RQMDE-FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~-~~~~~-~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+..+++.. ..+++|+|+|+.+++.|++++. +.+++.++++|+ ..++. ++.++||+|++..+.
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~ 121 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD 121 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC
Confidence 499999999999999998864 3489999999999999998874 335799999999 55542 457789999987543
Q ss_pred ceeccCC-CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+..... ........+++++.++|+|||++++.+...
T Consensus 122 p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 122 PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 2210000 011125779999999999999999887443
No 67
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.56 E-value=5.6e-14 Score=120.22 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=99.3
Q ss_pred CChhhhHHHhccCCCCceeecCCcC---hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHH
Q 026558 11 GEPWYWDNRYAHESGPFDWYQKYPS---LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAM 86 (237)
Q Consensus 11 ~~~~~w~~~y~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a 86 (237)
+.+.||...+...++.+. +.+. +.+.+...+.++. +|||+|||+|.++..++... ..+++++|+|+.+++.|
T Consensus 216 G~~~F~G~~f~V~p~vLI---PRpeTE~LVe~aL~~l~~~~-rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~A 291 (423)
T PRK14966 216 GVREFYGRRFAVNPNVLI---PRPETEHLVEAVLARLPENG-RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETA 291 (423)
T ss_pred eeeeecCcEEEeCCCccC---CCccHHHHHHHhhhccCCCC-EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 344566655555544433 3333 3333323333343 89999999999999988753 45899999999999999
Q ss_pred HHHcCC-CCCcEEEEccccccccccCCCccEEEeccccce------------------eccCCCChHHHHHHHHHHHHhc
Q 026558 87 MKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS------------------LLCGSNSRQNATQMLKEVWRVL 147 (237)
Q Consensus 87 ~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~------------------~~~~~~~~~~~~~~l~~~~~~L 147 (237)
+++... ..++.++++|+.+......++||+|+++.+... +..+.++.+....+++.+.+.|
T Consensus 292 reNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L 371 (423)
T PRK14966 292 RKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL 371 (423)
T ss_pred HHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence 999853 237889999986643112457999999876421 1122345556778999999999
Q ss_pred CCCcEEEEEEcC
Q 026558 148 KDKGVYILVTYG 159 (237)
Q Consensus 148 ~pgG~l~~~~~~ 159 (237)
+|||.+++....
T Consensus 372 kpgG~lilEiG~ 383 (423)
T PRK14966 372 AEGGFLLLEHGF 383 (423)
T ss_pred CCCcEEEEEECc
Confidence 999998876543
No 68
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.56 E-value=4.7e-14 Score=120.33 Aligned_cols=117 Identities=19% Similarity=0.261 Sum_probs=89.4
Q ss_pred HHHHHhhCCCC-CCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-----CCCcEEEEccccccccc
Q 026558 37 APLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMDEF 109 (237)
Q Consensus 37 ~~~l~~~~~~~-~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~ 109 (237)
.+++...++.. .++|||+|||+|.++..+++.+ ..+++++|+|+.+++.|+++++. ..++++...|+... +
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--~ 294 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--V 294 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--C
Confidence 34444455443 2489999999999999999876 35999999999999999998731 12678888887654 3
Q ss_pred cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+..+||+|+|+.++|.... .+.....++++.+.++|+|||.++++.
T Consensus 295 ~~~~fDlIlsNPPfh~~~~--~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHA--LTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCcc--CCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4568999999988875310 123456789999999999999999885
No 69
>PRK06202 hypothetical protein; Provisional
Probab=99.55 E-value=1.1e-13 Score=111.53 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=83.0
Q ss_pred CcEEEEccCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD----G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~----~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++. + ..+++|+|+|+.+++.|+++... .++.+...+...++ ..+++||+|+++.++
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~-~~~~~fD~V~~~~~l 139 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELV-AEGERFDVVTSNHFL 139 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEeccccc-ccCCCccEEEECCee
Confidence 48999999999998888752 3 24899999999999999988643 45777777776666 457899999999999
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
||+ +......+++++.++++ |.+++.++..+
T Consensus 140 hh~-----~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 140 HHL-----DDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred ecC-----ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 999 44456789999999998 66666665554
No 70
>PRK04266 fibrillarin; Provisional
Probab=99.54 E-value=7.1e-13 Score=106.02 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=77.3
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc---cccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ...|+++|+++.|++.+.+++....|+.++.+|+.+.. .+ .++||+|++...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~~-- 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDVA-- 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECCC--
Confidence 499999999999999998864 34899999999999988777655568999999987531 12 356999996532
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.....+++++.++|||||.+++..
T Consensus 151 -------~p~~~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 151 -------QPNQAEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred -------ChhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 11334557899999999999999853
No 71
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.53 E-value=1.4e-13 Score=114.11 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=84.8
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.|+++... . .++.++++|+.+. ++.++||+|+++.+..
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCCCC
Confidence 489999999999999999875 35999999999999999999852 2 3689999998654 3456899999986532
Q ss_pred ee------------------ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SL------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~------------------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.. ..+..+......+++.+.++|+|||.+++....
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 10 111233455678999999999999999887643
No 72
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.53 E-value=1.2e-13 Score=112.57 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=83.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.. ...++|+|+++.+++.|+++.. +..++.+.++|+.+. ++.++||+|+++.++..
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP--LPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc--CcCCceeEEEECCCCCc
Confidence 489999999999999999874 3499999999999999999874 334689999998763 45688999999876542
Q ss_pred ec-------------------cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LL-------------------CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~-------------------~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. .+..+......+++++.++|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 10 0111123345789999999999999988753
No 73
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.52 E-value=2.5e-13 Score=107.47 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=77.2
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++.. . .++++..+|+.+.. ....+||+|++...+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL-EKHAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC-ccCCCccEEEEccCc
Confidence 499999999999998888753 24899999999999999998742 2 25889999998754 345789999998877
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.++ .+++.+.|+|||++++..
T Consensus 153 ~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 153 STI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred chh-------------hHHHHHhcCcCcEEEEEE
Confidence 655 246889999999998765
No 74
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.52 E-value=9.5e-14 Score=108.96 Aligned_cols=112 Identities=23% Similarity=0.286 Sum_probs=84.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc--ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l 123 (237)
.+|||||||+|.++..+++.. ...++|+|+++.+++.|+++.. +..+++++++|+.+++. ++.+.+|.|+++.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pd 97 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPD 97 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCC
Confidence 399999999999999999875 3489999999999999998864 34589999999987542 345689999987553
Q ss_pred ceeccCCC--ChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 124 DSLLCGSN--SRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 124 ~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
.+. .... ..-....+++++.++|+|||.+++.+....
T Consensus 98 pw~-k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 98 PWP-KKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred cCC-CCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 322 0000 001125789999999999999999885443
No 75
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.51 E-value=2.5e-13 Score=108.63 Aligned_cols=97 Identities=23% Similarity=0.366 Sum_probs=81.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++.... .++.+.++|+.+.+ ++||+|++..++++
T Consensus 57 ~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVCMDVLIH 131 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEEhhHHHh
Confidence 4999999999999999998865 9999999999999999987422 37889999987764 78999999988887
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+ +......+++++.+++++++++.+
T Consensus 132 ~-----~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 132 Y-----PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred C-----CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 7 556778899999999987655544
No 76
>PRK14967 putative methyltransferase; Provisional
Probab=99.51 E-value=1.9e-13 Score=109.64 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=82.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++.. ..++.++.+|+.+. ++.++||+|+++.++....
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCCeeEEEECCCCCCCC
Confidence 49999999999999999887645999999999999999988742 23577888888764 3567899999986543210
Q ss_pred --------------cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 --------------CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 --------------~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+..+......+++++.++|+|||++++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 0111223467789999999999999988653
No 77
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.51 E-value=3.8e-13 Score=107.25 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=81.5
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCC
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 113 (237)
.++.........+|||+|||+|.++..+++... .+++++|+++.+++.|++++. +..+++++.+|+.+.. .....
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~~ 146 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLAP 146 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccCC
Confidence 344433333334999999999999999988753 369999999999999999984 3357899999997754 33468
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
||+|++.....++ .+.+.+.|+|||++++..
T Consensus 147 fD~Ii~~~~~~~~-------------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 147 YDRIYVTAAGPKI-------------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCEEEEcCCcccc-------------cHHHHHhcCcCcEEEEEE
Confidence 9999988665444 345788999999998865
No 78
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=4.3e-13 Score=106.63 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=80.9
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
++......+..+|||+|||+|..+..+++.. ..+++++|+++++++.+++++. +..+++++.+|..... ...+.|
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~~f 146 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENAPY 146 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCCCc
Confidence 3433333333499999999999998888763 2499999999999999999985 3357999999987754 456789
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+|++......+ .+.+.+.|+|||++++..
T Consensus 147 D~I~~~~~~~~~-------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 147 DRIYVTAAGPDI-------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CEEEECCCcccc-------------hHHHHHhhCCCcEEEEEE
Confidence 999997665443 245677899999988864
No 79
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.51 E-value=2.1e-13 Score=113.27 Aligned_cols=105 Identities=21% Similarity=0.254 Sum_probs=80.1
Q ss_pred HhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEE
Q 026558 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 41 ~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
.....++ .+|||+|||+|.++..+++.+..+++++|+++.+++.|+++.... ..+.+...+... ...++||+|
T Consensus 154 ~~~~~~g-~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~~~~~fDlV 229 (288)
T TIGR00406 154 EDLDLKD-KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---PIEGKADVI 229 (288)
T ss_pred HhhcCCC-CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---ccCCCceEE
Confidence 3333444 499999999999999998887669999999999999999987421 234455554322 335789999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+++... .....++.++.++|+|||.+++....
T Consensus 230 van~~~----------~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 230 VANILA----------EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEecCH----------HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 997543 34467899999999999999987653
No 80
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=107.61 Aligned_cols=144 Identities=21% Similarity=0.270 Sum_probs=105.9
Q ss_pred ChhhhHHHhccCCCCceeecCCcChHHHHHhhCCC-CC--CcEEEEccCCchhHHHHHHcCC---CeEEEEeCCHHHHHH
Q 026558 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPS-HH--QRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEA 85 (237)
Q Consensus 12 ~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~-~~--~~iLdlG~G~G~~~~~~~~~~~---~~~~~vD~s~~~~~~ 85 (237)
.+.||+..|......+= ..+.- +.+-+..+.+. .. .+||++|||.|.....+++... -.++++|.||.+++.
T Consensus 35 ~~k~wD~fy~~~~~rFf-kdR~w-L~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~ 112 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFF-KDRNW-LLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL 112 (264)
T ss_pred hhhhhhhhhhhcccccc-chhHH-HHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence 45699999998877641 11111 11111122211 11 2799999999999988887642 389999999999999
Q ss_pred HHHHcCCC-CCcEEEEccccccc---cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 86 MMKKYSNR-PQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 86 a~~~~~~~-~~~~~~~~d~~~~~---~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
.+++.... .++.....|+.... ....+++|+|++..+|..+ +++.....++++.++|||||.+++-+++.-
T Consensus 113 vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi-----~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 113 VKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI-----HPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred HHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEecc-----ChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 99987532 35555556665422 2567899999999999999 889999999999999999999999998774
Q ss_pred h
Q 026558 162 I 162 (237)
Q Consensus 162 ~ 162 (237)
.
T Consensus 188 D 188 (264)
T KOG2361|consen 188 D 188 (264)
T ss_pred h
Confidence 4
No 81
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.50 E-value=8.2e-13 Score=103.99 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=78.8
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..++.. + ..+++++|+++.+++.++++... ..++.++.+|+.+......+.||+|++....
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~ 121 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGS 121 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCc
Confidence 49999999999999998765 2 34899999999999999988742 2478888999876431234689999985422
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....+++.+.++|+|||++++..
T Consensus 122 ----------~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 122 ----------EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred ----------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 455789999999999999998744
No 82
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.50 E-value=3e-13 Score=110.07 Aligned_cols=110 Identities=11% Similarity=0.087 Sum_probs=83.3
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-cccCCCccEEEecccccee-
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDSL- 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l~~~- 126 (237)
+|||+|||+|.++..+++.. ..+++++|+|+.+++.|++++... +.+++++|+.+.. ....++||+|+++.+....
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTALRGRVDILAANAPYVPTD 167 (251)
T ss_pred EEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchhcCCCEeEEEECCCCCCch
Confidence 89999999999999998764 348999999999999999998532 3588999987642 1113579999999765311
Q ss_pred ------------------ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 127 ------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 127 ------------------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
..+.++.+....+++.+.++|+|||.+++.....
T Consensus 168 ~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 168 AIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred hhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 1122334456789999999999999999877543
No 83
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=3.8e-13 Score=111.12 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=85.0
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++. ...++.++.+|+.+.. ..++||+|+++.++..
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~--~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL--PGGRFDLIVSNPPYIP 187 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--CCCceeEEEECCCcCC
Confidence 489999999999999999875 3599999999999999999975 2347899999986543 3578999999765321
Q ss_pred e-------------------ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 L-------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~-------------------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. +.+..+......+++++.++|+|||.+++...
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 1 11223445678899999999999999988653
No 84
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=3.3e-13 Score=112.88 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=85.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++.. . .++.++++|+.+. ++.++||+|+++.+..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCCC
Confidence 489999999999999998875 35999999999999999999852 2 3689999998654 3456899999986431
Q ss_pred e------------------eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 S------------------LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. +..+..+......+++++.+.|+|||.+++.....
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 1 11222344667889999999999999999876433
No 85
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.49 E-value=4.6e-13 Score=109.14 Aligned_cols=113 Identities=24% Similarity=0.380 Sum_probs=86.8
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHH--HHcCC-CCCcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMM--KKYSN-RPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~--~~~~~-~~~~~~~~~d~~~~~~~~~~~ 113 (237)
..+.....+-.+++|||||||+|.++..++..|...|+|+|.++...-+.+ +++.+ ...+.++...+.+++ . .+.
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp-~-~~~ 182 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP-N-LGA 182 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc-c-cCC
Confidence 444443333344599999999999999999999879999999987766533 33332 223334435566776 3 678
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
||+|+|-++|.|. .++...|.++.+.|+|||.+++.|.
T Consensus 183 FDtVF~MGVLYHr-------r~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 183 FDTVFSMGVLYHR-------RSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred cCEEEEeeehhcc-------CCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 9999999999999 8999999999999999999999775
No 86
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.49 E-value=4.7e-13 Score=111.10 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=85.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..++... ..+++++|+|+.+++.|+++.. +. .++.++++|+.+. ++..+||+|+++.+..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--LAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--CcCCCccEEEECCCCC
Confidence 389999999999999999875 3599999999999999999874 22 2489999998764 3445899999985431
Q ss_pred e------------------eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 S------------------LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. +..+.++......+++++.++|+|||.+++.....
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 1 11223445578899999999999999998877544
No 87
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.6e-13 Score=112.38 Aligned_cols=109 Identities=22% Similarity=0.324 Sum_probs=82.9
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC-C--cEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP-Q--LKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~d~~~~~~~~~~~ 113 (237)
.+++.....++. +|||+|||+|.+++.+++.|..+++|+|++|.+++.|++|..-+. . +.....+....+ ..++
T Consensus 153 L~~Le~~~~~g~-~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~--~~~~ 229 (300)
T COG2264 153 LEALEKLLKKGK-TVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP--ENGP 229 (300)
T ss_pred HHHHHHhhcCCC-EEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc--ccCc
Confidence 445666666565 999999999999999999998799999999999999999984211 1 222222333332 3469
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
||+|+++- |. +-...+...+.++|+|||+++++-.
T Consensus 230 ~DvIVANI-LA---------~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 230 FDVIVANI-LA---------EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ccEEEehh-hH---------HHHHHHHHHHHHHcCCCceEEEEee
Confidence 99999985 32 3457899999999999999998764
No 88
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2e-12 Score=105.55 Aligned_cols=151 Identities=15% Similarity=0.226 Sum_probs=103.4
Q ss_pred CCCCCCCChhhhHHHhccC-------CCCceeecCCcChHHHHHhhCCCC-CCcEEEEccCCchhHHHHHHcC-CCeEEE
Q 026558 5 TTTQAYGEPWYWDNRYAHE-------SGPFDWYQKYPSLAPLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDG-YEDVVN 75 (237)
Q Consensus 5 ~~~~~~~~~~~w~~~y~~~-------~~~~~~~~~~~~~~~~l~~~~~~~-~~~iLdlG~G~G~~~~~~~~~~-~~~~~~ 75 (237)
.++..+.....|....... ++.|.+. .-+.=.+++...++.. ..+|||+|||.|.+++.+++.. ..+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtm 187 (300)
T COG2813 109 ENPPPFADEPEWKVYLLGHELTFKTLPGVFSRD-KLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTL 187 (300)
T ss_pred CCCCcccchhhhhhhhccCceEEEeCCCCCcCC-CcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEE
Confidence 3445555566676655411 3334432 2222244444444433 3499999999999999999987 469999
Q ss_pred EeCCHHHHHHHHHHcCC-C-CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 76 VDISSVVIEAMMKKYSN-R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 76 vD~s~~~~~~a~~~~~~-~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
+|+|..+++.|++++.. . .+..+...|..+.. .++||.|+|+.++|.= -.....-..+++..+.++|++||.+
T Consensus 188 vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v---~~kfd~IisNPPfh~G--~~v~~~~~~~~i~~A~~~L~~gGeL 262 (300)
T COG2813 188 VDVNARAVESARKNLAANGVENTEVWASNLYEPV---EGKFDLIISNPPFHAG--KAVVHSLAQEIIAAAARHLKPGGEL 262 (300)
T ss_pred EecCHHHHHHHHHhHHHcCCCccEEEEecccccc---cccccEEEeCCCccCC--cchhHHHHHHHHHHHHHhhccCCEE
Confidence 99999999999999852 2 34366777776553 2399999999999732 1111223448999999999999999
Q ss_pred EEEEcCCc
Q 026558 154 ILVTYGAP 161 (237)
Q Consensus 154 ~~~~~~~~ 161 (237)
.++....+
T Consensus 263 ~iVan~~l 270 (300)
T COG2813 263 WIVANRHL 270 (300)
T ss_pred EEEEcCCC
Confidence 99876443
No 89
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.48 E-value=4.6e-13 Score=107.02 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=92.3
Q ss_pred HHHhhCCCC-CCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccccc-ccCC
Q 026558 39 LIKLYVPSH-HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDE-FQTG 112 (237)
Q Consensus 39 ~l~~~~~~~-~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~-~~~~ 112 (237)
++..+.... .++|||||||+|.++..++++. ..++++||+++++.+.|+++.+. ..++++++.|+.++.. ....
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~ 114 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA 114 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence 344444333 3599999999999999999984 46999999999999999999864 3489999999988753 3345
Q ss_pred CccEEEeccccceeccC-C----------CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 113 SFDSVVDKGTLDSLLCG-S----------NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~-~----------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+||+|+|+.++...... . ...-...++++.+.++|||||.+.++.
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 79999999886544222 0 111256789999999999999999876
No 90
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.48 E-value=3.8e-13 Score=109.42 Aligned_cols=170 Identities=22% Similarity=0.296 Sum_probs=115.6
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CC-----CcEEEEccccccc---
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RP-----QLKYIKMDVRQMD--- 107 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~-----~~~~~~~d~~~~~--- 107 (237)
+|+....+.. .+++||||.|..++.+-+.+...++|+||++..+++|+++... .. .+.|+.+|.....
T Consensus 110 LI~~y~~~~~-~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d 188 (389)
T KOG1975|consen 110 LINLYTKRGD-DVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD 188 (389)
T ss_pred HHHHHhcccc-ccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH
Confidence 3444555565 8999999999999999888877999999999999999999842 11 3678899986421
Q ss_pred --cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcc--cCCCCceEEEEEecc
Q 026558 108 --EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML--RDSCSWNIKLHVIEK 183 (237)
Q Consensus 108 --~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~--~~~~~w~~~~~~~~~ 183 (237)
++.+.+||+|-|-.++|+.+ .+.+....+|.++.+.|+|||+++......... ...+ .+...|.-.+..+..
T Consensus 189 ~~e~~dp~fDivScQF~~HYaF---etee~ar~~l~Nva~~LkpGG~FIgTiPdsd~I-i~rlr~~e~~~~gNdiykv~y 264 (389)
T KOG1975|consen 189 LLEFKDPRFDIVSCQFAFHYAF---ETEESARIALRNVAKCLKPGGVFIGTIPDSDVI-IKRLRAGEVERFGNDIYKVTY 264 (389)
T ss_pred hccCCCCCcceeeeeeeEeeee---ccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHH-HHHHHhccchhhcceeeeEee
Confidence 24455699999999998764 456788889999999999999998776443221 1112 223355545433332
Q ss_pred ceecccCC-CCCcccccCcccCCCCCchhhhc
Q 026558 184 LVVEEKSG-HPIWELTNPVPLENDGRSVEELL 214 (237)
Q Consensus 184 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (237)
..-..... -|.+.....+.|++... .++++
T Consensus 265 ~~~~~k~~~~p~fG~kY~F~LedaVd-cPEyl 295 (389)
T KOG1975|consen 265 EIEFQKEFDVPPFGAKYRFHLEDAVD-CPEYL 295 (389)
T ss_pred eeecccccCCCCccceEEEEcccccC-Cccee
Confidence 21111111 35556666677766666 44443
No 91
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.48 E-value=5.6e-13 Score=107.51 Aligned_cols=103 Identities=24% Similarity=0.400 Sum_probs=86.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. ...+.+...|+.+.+....+.||+|++..+++++
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~- 127 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV- 127 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc-
Confidence 4899999999999999988764 899999999999999988642 2356788888876643345789999999999888
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+...+++.+.+.|+|||.+++....
T Consensus 128 ------~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 128 ------PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ------CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 67788999999999999999887654
No 92
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.48 E-value=3.2e-13 Score=105.97 Aligned_cols=94 Identities=24% Similarity=0.424 Sum_probs=76.7
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-cccccCCCccEEEecc
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKG 121 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~I~~~~ 121 (237)
.++++. +|||+|||+|.++..+++.....++|+|+|+.+++.++++ +++++++|+.+ ++.+++++||+|+++.
T Consensus 10 ~i~~~~-~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 10 LIPPGS-RVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred hcCCCC-EEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 344454 9999999999999988876545889999999999998754 47888888875 3225678899999999
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCC
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKD 149 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~p 149 (237)
+++|+ .+...+++++.+.+++
T Consensus 84 ~l~~~-------~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 84 TLQAT-------RNPEEILDEMLRVGRH 104 (194)
T ss_pred HhHcC-------cCHHHHHHHHHHhCCe
Confidence 99999 7788899999887653
No 93
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.48 E-value=3e-12 Score=97.43 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=84.6
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecc
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
+.+..+++|+|||||+.++.++..+ ..+++++|-++++++..++|.. +.+|+.++.+++.+.. ....++|.||..+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L-~~~~~~daiFIGG 110 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL-PDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh-cCCCCCCEEEECC
Confidence 3333599999999999999999655 3599999999999999998885 3579999999998764 1222799999987
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. .....+++.+...|+|||++++....-
T Consensus 111 g-----------~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 111 G-----------GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred C-----------CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 6 344889999999999999999866433
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.47 E-value=1.1e-12 Score=104.39 Aligned_cols=134 Identities=11% Similarity=0.107 Sum_probs=91.3
Q ss_pred CCChhhhHHHhccCCCCceee--cCCcChHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 026558 10 YGEPWYWDNRYAHESGPFDWY--QKYPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM 86 (237)
Q Consensus 10 ~~~~~~w~~~y~~~~~~~~~~--~~~~~~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a 86 (237)
|-...+++..|......+..- ...+.+...+...+. .+..+|||+|||+|..+..+++... +++++|+++.+++.+
T Consensus 38 f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a 116 (212)
T PRK00312 38 FVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEA 116 (212)
T ss_pred cCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHH
Confidence 334445565566553332210 112223333333333 3334999999999999988887754 899999999999999
Q ss_pred HHHcC--CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 87 MKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 87 ~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+++++ +..++.+..+|..+.. ...+.||+|++...++++ .+.+.+.|+|||++++...
T Consensus 117 ~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~~~~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 117 KRRLKQLGLHNVSVRHGDGWKGW-PAYAPFDRILVTAAAPEI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHCCCCceEEEECCcccCC-CcCCCcCEEEEccCchhh-------------hHHHHHhcCCCcEEEEEEc
Confidence 99874 3346899999986542 234789999998765443 3457899999999988764
No 95
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.47 E-value=6.1e-13 Score=111.23 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=82.7
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC-CC--CcEEEEccccccccccCC----Cc
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN-RP--QLKYIKMDVRQMDEFQTG----SF 114 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~-~~--~~~~~~~d~~~~~~~~~~----~f 114 (237)
++++. +|||+|||+|..+..+++.. ..+++++|+|++|++.+++++.. .+ ++.++++|+.+...++.. ..
T Consensus 61 ~~~~~-~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 61 TGAGC-ELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred hCCCC-eEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCe
Confidence 34444 89999999999999998875 24899999999999999988743 23 456689999764213222 23
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.++++..+++++ ++++...+|+++.++|+|||.+++..
T Consensus 140 ~~~~~gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 140 LGFFPGSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEEecccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 455555677777 67888999999999999999998754
No 96
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.47 E-value=7.7e-13 Score=112.54 Aligned_cols=124 Identities=18% Similarity=0.210 Sum_probs=91.9
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-cccCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-EFQTG 112 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~~~~~ 112 (237)
..++..........+||||||+|.++..+++.. ...++|+|+++.+++.|.+++. +..|+.++++|+..+. .++++
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 344555544433499999999999999999875 3499999999999999998874 3468999999997642 26788
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
++|.|+++.+.-+. ...+-+-....+++++.|+|+|||.+.+.|....
T Consensus 192 s~D~I~lnFPdPW~-KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 192 SVEKIFVHFPVPWD-KKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred ceeEEEEeCCCCcc-ccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 99999987543221 0000001236799999999999999999885443
No 97
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.47 E-value=1.2e-12 Score=110.85 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=87.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.+++.++..+. .++|+|+++.+++.++++++ +..++.+.++|+.+++ +..++||+|+++.++...
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~-~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP-LSSESVDAIATDPPYGRS 261 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-cccCCCCEEEECCCCcCc
Confidence 3899999999999998877764 99999999999999999875 2345789999999887 667899999999776432
Q ss_pred ccC--CCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 127 LCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 127 ~~~--~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
... .........+++++.++|+|||++++...+.
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 100 0112346889999999999999998887544
No 98
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.46 E-value=7.7e-13 Score=110.62 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=74.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CCCcEEEEccccccccccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.+|||+|||+|.++..+++.+. +++|+|+|+.|++.++++... ..++.|...|+.++ .++||+|++..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEEcC
Confidence 4999999999999999999875 999999999999999998742 13567888887544 47899999999
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
+++|+ +.+....+++.+.+ +.++|.++
T Consensus 221 vL~H~-----p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 221 VLIHY-----PQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred EEEec-----CHHHHHHHHHHHHh-hcCCEEEE
Confidence 98887 44445567777765 45555543
No 99
>PRK00811 spermidine synthase; Provisional
Probab=99.46 E-value=7.7e-13 Score=109.56 Aligned_cols=111 Identities=19% Similarity=0.305 Sum_probs=85.6
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcC-------CCCCcEEEEccccccccccCCCcc
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..+.+++||+||||+|..+..++++ +..+++++|+++.+++.|++.+. ..++++++.+|+........++||
T Consensus 73 ~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 73 AHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred hCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 3344459999999999999999887 45599999999999999999873 246889999999876423467899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+++.+-... .........+++.+.+.|+|||++++..
T Consensus 153 vIi~D~~dp~~---~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 153 VIIVDSTDPVG---PAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEEECCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 99997542211 1111234788999999999999998864
No 100
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.46 E-value=7e-13 Score=106.24 Aligned_cols=103 Identities=25% Similarity=0.377 Sum_probs=87.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-C-CcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-P-QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~-~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++... . ++.+...|+.+.+....++||+|++...+++.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 4899999999999999988765 7999999999999999987432 2 58888888877652224789999999999988
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+...+++++.++|+|||.+++.+..
T Consensus 126 -------~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 126 -------PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 77889999999999999999887643
No 101
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.45 E-value=8.3e-13 Score=117.43 Aligned_cols=108 Identities=20% Similarity=0.224 Sum_probs=84.2
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.+++.++... ..+++++|+|+.+++.|+++... ..++.++++|+.+. ++.++||+|+++.+..
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--CcCCCccEEEECCCCC
Confidence 389999999999999888753 45999999999999999999742 23688999998653 3456899999986532
Q ss_pred e-------------------eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 S-------------------LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~-------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. ++.+..+.+....+++.+.++|+|||.+++...
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1 123334556778899999999999999988653
No 102
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.45 E-value=2.1e-12 Score=99.16 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=81.2
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEE
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
.+++........+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++....+++++.+|+.+++ ++...||.|
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~v 81 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKV 81 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEE
Confidence 33443333333489999999999999999985 4999999999999999999866568999999999887 556679999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.+++.. ......+++.. .+.++|.++++.
T Consensus 82 i~n~Py~~~------~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 82 VGNLPYNIS------TPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred EECCCcccH------HHHHHHHHhcC--CCcceEEEEEEH
Confidence 998776532 23333333321 244778887754
No 103
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.45 E-value=1.5e-12 Score=109.29 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=84.4
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.+++.++++.. .+++++|. +.+++.+++++.. ..+++++.+|+.+.+ ++ .+|+|++..++|
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~--~~D~v~~~~~lh 226 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YP--EADAVLFCRILY 226 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-CC--CCCEEEeEhhhh
Confidence 4999999999999999998863 48999997 8899999988742 246899999998654 43 369999988888
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+. +.+....++++++++|+|||++++.+.
T Consensus 227 ~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 227 SA-----NEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred cC-----ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 76 555668899999999999999999874
No 104
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.45 E-value=1.9e-12 Score=102.59 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=76.8
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-------cccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-------~~~~~~fD~I~~ 119 (237)
.+|||||||+|.++..+++.. ...++|+|+++ + ...+++.++++|+.+.. .+..++||+|++
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 499999999999999998874 24899999998 1 12257899999998753 145788999999
Q ss_pred ccccceeccCCCChH------HHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 120 KGTLDSLLCGSNSRQ------NATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+...++. +.+..+ ....+++++.++|+|||.+++..+...
T Consensus 124 ~~~~~~~--g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 124 DMAPNMS--GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred CCCCccC--CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 8766543 111111 125689999999999999999776553
No 105
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.45 E-value=1.1e-12 Score=106.89 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=72.7
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.++. +|||+|||+|.+++.+++.+..+++|+|+|+.+++.|+++.... ++. +...+. ..+.+||+|+++...
T Consensus 118 ~~~~-~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~-~~~----~~~~~~-~~~~~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGK-TVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN-GVE----LNVYLP-QGDLKADVIVANILA- 189 (250)
T ss_pred CCCC-EEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc-CCC----ceEEEc-cCCCCcCEEEEcCcH-
Confidence 3444 99999999999999888887657999999999999999997431 111 111111 112279999987432
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.....+++++.++|+|||++++....
T Consensus 190 ---------~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 190 ---------NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred ---------HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 34577899999999999999998643
No 106
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.44 E-value=3.6e-13 Score=111.25 Aligned_cols=108 Identities=24% Similarity=0.320 Sum_probs=80.3
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCcc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD 115 (237)
.+++.....++. +|||+|||+|.+++..++.|..+++|+|++|.+++.|++|..-+ -..++......+ ...++||
T Consensus 152 l~~l~~~~~~g~-~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~---~~~~~~d 227 (295)
T PF06325_consen 152 LELLEKYVKPGK-RVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED---LVEGKFD 227 (295)
T ss_dssp HHHHHHHSSTTS-EEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC---TCCS-EE
T ss_pred HHHHHHhccCCC-EEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc---cccccCC
Confidence 445666656665 99999999999999999999779999999999999999998421 112333322222 2358999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+|+++-.. .-...++..+.++|+|||.++++-.
T Consensus 228 lvvANI~~----------~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 228 LVVANILA----------DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp EEEEES-H----------HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEECCCH----------HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 99998544 3457888999999999999998764
No 107
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.44 E-value=8e-12 Score=92.68 Aligned_cols=117 Identities=21% Similarity=0.323 Sum_probs=98.1
Q ss_pred hHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----c
Q 026558 36 LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----E 108 (237)
Q Consensus 36 ~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~ 108 (237)
+.+.....+.... .-|||+|.|||.++.++++++ ...++++|+|++......+.+ +.+.++.+|+.++. +
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCccccccchhhHHHHHhh
Confidence 4444555554444 389999999999999999998 459999999999999999998 56778999987654 3
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+....||.|+|.-++-.+ +.....++++.+...|..||.++..++++
T Consensus 113 ~~gq~~D~viS~lPll~~-----P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 113 HKGQFFDSVISGLPLLNF-----PMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred cCCCeeeeEEeccccccC-----cHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 667889999999888777 77888999999999999999999999874
No 108
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.44 E-value=2.5e-12 Score=89.24 Aligned_cols=100 Identities=28% Similarity=0.449 Sum_probs=83.5
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce-e
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS-L 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~-~ 126 (237)
+|+|+|||+|..+..+++....+++++|+++.+++.+++... ...++.+...|+.+......++||+|+++.++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 589999999999999988444599999999999999984332 2357889999998775224678999999999887 4
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.....+++.+.+.|+|||.+++.
T Consensus 81 -------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 -------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78899999999999999999875
No 109
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.4e-12 Score=107.60 Aligned_cols=140 Identities=22% Similarity=0.298 Sum_probs=98.0
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHh---hCCCCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHH
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKL---YVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMK 88 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~ 88 (237)
+.||.-.+...++.+. +.++-..++.. .......+|||+|||+|.+++.++..+. .+|+|+|+|+.+++.|++
T Consensus 76 ~~f~gl~~~v~~~vli---Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~ 152 (280)
T COG2890 76 AEFGGLRFKVDEGVLI---PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE 152 (280)
T ss_pred CeecceeeeeCCCcee---cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH
Confidence 3455555555555544 44443333333 2222221699999999999999999874 499999999999999999
Q ss_pred HcCC--CCCcEEEEccccccccccCCCccEEEeccccc------------------eeccCCCChHHHHHHHHHHHHhcC
Q 026558 89 KYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD------------------SLLCGSNSRQNATQMLKEVWRVLK 148 (237)
Q Consensus 89 ~~~~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~------------------~~~~~~~~~~~~~~~l~~~~~~L~ 148 (237)
|... ..++.++++|..+.. .++||+|++|.+.- .+..+.++.+....++.++.+.|+
T Consensus 153 Na~~~~l~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~ 229 (280)
T COG2890 153 NAERNGLVRVLVVQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK 229 (280)
T ss_pred HHHHcCCccEEEEeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC
Confidence 9853 244556666665543 34999999997631 122333566788899999999999
Q ss_pred CCcEEEEEEc
Q 026558 149 DKGVYILVTY 158 (237)
Q Consensus 149 pgG~l~~~~~ 158 (237)
|||.+++...
T Consensus 230 ~~g~l~le~g 239 (280)
T COG2890 230 PGGVLILEIG 239 (280)
T ss_pred CCcEEEEEEC
Confidence 9999988775
No 110
>PRK14968 putative methyltransferase; Provisional
Probab=99.44 E-value=3.8e-12 Score=99.09 Aligned_cols=107 Identities=25% Similarity=0.341 Sum_probs=82.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCC--cEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQ--LKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~--~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.+ .+++++|+|+.+++.+++++.. ..+ +.++..|+.+. +.+.+||+|+++.++.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNPPYL 101 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECCCcC
Confidence 489999999999999999885 5999999999999999888732 122 78888888764 3455899999987653
Q ss_pred ee--------------ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SL--------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~--------------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. ..+..+......+++++.++|+|||.+++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 31 01112234567889999999999999887653
No 111
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.44 E-value=9.2e-13 Score=110.81 Aligned_cols=110 Identities=25% Similarity=0.298 Sum_probs=83.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC----C----C----CCcEEEEccccccc---cccC--
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS----N----R----PQLKYIKMDVRQMD---EFQT-- 111 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~----~----~----~~~~~~~~d~~~~~---~~~~-- 111 (237)
.+|||||||.|..+..+...+...++|+||+++.++.|+++.+ . . -...++.+|..... .+..
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~ 143 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRS 143 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTT
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccC
Confidence 3999999999999888888877799999999999999999981 1 1 13567888876422 1333
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
..||+|-|-..+|+.+ .+.+....+|+++.+.|+|||+++..+....
T Consensus 144 ~~FDvVScQFalHY~F---ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAF---ESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp S-EEEEEEES-GGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred CCcceeehHHHHHHhc---CCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 5999999999999886 4567888899999999999999999886553
No 112
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.43 E-value=2.7e-12 Score=118.52 Aligned_cols=122 Identities=15% Similarity=0.115 Sum_probs=90.5
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC--CCcEEEEccccccccccCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~--~~~~~~~~d~~~~~~~~~~ 112 (237)
+.++..... +. +|||+|||+|.+++.++..|..+|+++|+|+.+++.|++++. +. .+++++++|+.+......+
T Consensus 530 R~~~~~~~~-g~-rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~ 607 (702)
T PRK11783 530 RRMIGQMAK-GK-DFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEARE 607 (702)
T ss_pred HHHHHHhcC-CC-eEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCC
Confidence 445555443 44 899999999999999999876589999999999999999984 22 3689999999775311256
Q ss_pred CccEEEeccccceecc----CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 113 SFDSVVDKGTLDSLLC----GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+||+|+++.+...-.- -.....+...++..+.++|+|||.+++.+...
T Consensus 608 ~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 608 QFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred CcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 8999999865321100 00113466788999999999999998876543
No 113
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.42 E-value=3.2e-12 Score=102.80 Aligned_cols=94 Identities=26% Similarity=0.364 Sum_probs=76.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+. .++|+|+|+.+++.|++++... .++.+..+|+. ...++||+|++..+++|
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hccCCcCEEEEcchhhc
Confidence 4899999999999999998875 7999999999999999987431 36888888843 23578999999999987
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGV 152 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (237)
+ +......+++.+.+.++++++
T Consensus 140 ~-----~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 140 Y-----PQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred C-----CHHHHHHHHHHHHhhcCCeEE
Confidence 6 456778888999887754443
No 114
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.41 E-value=3.9e-12 Score=99.98 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=82.5
Q ss_pred hHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccC
Q 026558 36 LAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~ 111 (237)
+..++...+. ....+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++++ +..+++++.+|+.+......
T Consensus 28 v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 28 VRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC
Confidence 4444444443 233499999999999999988653 3599999999999999999874 33578999999865321222
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
..+|.++... . .....+++++.++|+|||.+++.....
T Consensus 108 ~~~d~v~~~~----~-------~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 108 PAPDRVCIEG----G-------RPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CCCCEEEEEC----C-------cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 3467765532 1 345788999999999999999887543
No 115
>PTZ00146 fibrillarin; Provisional
Probab=99.40 E-value=2.5e-11 Score=99.49 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=76.0
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc--cccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--EFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.- ...|+++|+++.+++.+.+.....+|+.++..|+.... ....+.+|+|+++..
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-- 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA-- 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC--
Confidence 399999999999999999874 24899999999876555555443468999999986531 123457999999763
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
. +.+...++.++.++|||||.+++.
T Consensus 212 ~-------pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 Q-------PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred C-------cchHHHHHHHHHHhccCCCEEEEE
Confidence 1 245666778899999999999984
No 116
>PHA03411 putative methyltransferase; Provisional
Probab=99.39 E-value=1.2e-11 Score=100.30 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=82.8
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..++.+. ..+++++|+++.+++.++++. +++.++++|+.++. ...+||+|+++.++.+..
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDVFEFE--SNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECchhhhc--ccCCCcEEEEcCCccccC
Confidence 499999999999998887764 359999999999999999986 57899999998875 356899999999987751
Q ss_pred cCC-C----------ChHH--HHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 128 CGS-N----------SRQN--ATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 128 ~~~-~----------~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
... . +.+. ..+++.....+|+|+|.+++...+.|
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 100 0 0011 35677888899999998777644333
No 117
>PHA03412 putative methyltransferase; Provisional
Probab=99.38 E-value=1e-11 Score=98.56 Aligned_cols=99 Identities=12% Similarity=0.219 Sum_probs=77.1
Q ss_pred CcEEEEccCCchhHHHHHHc----CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD----GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~----~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++. ...+++++|+++.+++.|+++. +++.+...|+.... + .++||+|+++.++.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---~~~~~~~~D~~~~~-~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---PEATWINADALTTE-F-DTLFDMAISNPPFG 125 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---cCCEEEEcchhccc-c-cCCccEEEECCCCC
Confidence 49999999999999988874 2348999999999999999886 46889999998765 3 56899999998876
Q ss_pred eeccCC-----CChHHHHHHHHHHHHhcCCCcE
Q 026558 125 SLLCGS-----NSRQNATQMLKEVWRVLKDKGV 152 (237)
Q Consensus 125 ~~~~~~-----~~~~~~~~~l~~~~~~L~pgG~ 152 (237)
..-... .+......+++.+.+++++|+.
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 442111 1234567789999996666654
No 118
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2e-11 Score=94.98 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=88.8
Q ss_pred ChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCC
Q 026558 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 35 ~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~ 112 (237)
.+..+++.+...+..+|||||||+|+.+..+++... +|+.+|+.++..+.|++++. +..|+.+.++|....- -+..
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~-~~~a 137 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW-PEEA 137 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC-CCCC
Confidence 356666666665556999999999999999998865 99999999999999999996 4558999999998763 3458
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.||.|+.......+ =+.+.+.|++||++++...
T Consensus 138 PyD~I~Vtaaa~~v-------------P~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEV-------------PEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCC-------------CHHHHHhcccCCEEEEEEc
Confidence 89999998766544 2336778999999999775
No 119
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=1.5e-11 Score=107.47 Aligned_cols=112 Identities=17% Similarity=0.298 Sum_probs=86.3
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++++ +..++++.+.|+..++.+..++||.|+++.++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCT 318 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCC
Confidence 499999999999999998863 3499999999999999999985 334688999999876534467899999976653
Q ss_pred eeccCCC--------Ch-------HHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSN--------SR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~--------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
....-.. +. ..+.++|.++.+.|+|||+++..|.+-
T Consensus 319 g~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 319 SLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2210000 00 245778999999999999999988654
No 120
>PRK04457 spermidine synthase; Provisional
Probab=99.35 E-value=1.4e-11 Score=100.91 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=83.5
Q ss_pred CCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccc
Q 026558 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
+.+|||||||+|.++..+++.. ..+++++|+++++++.|++.+.. .++++++.+|+.+......++||+|+++..
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~- 145 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF- 145 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC-
Confidence 3489999999999999998765 35899999999999999999852 367899999997653223468999998742
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+.. ..........+++++.++|+|||++++.....
T Consensus 146 ~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 146 DGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 111 00111234789999999999999999865433
No 121
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.34 E-value=3.8e-12 Score=99.88 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=76.0
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCc--EEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQL--KYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~--~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.++|+|||+|..++-++++. .+|+|+|+|+.|++.|++.... ..+. .+...+..++. -.+++.|+|++..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-GGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-CCCcceeeehhhhhHHhh
Confidence 89999999998888888885 5999999999999999988632 1111 22222222232 137899999999999987
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCc-EEEEEEcC
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKG-VYILVTYG 159 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG-~l~~~~~~ 159 (237)
+..++.+++.|+||++| .+.+..+.
T Consensus 114 --------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 --------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred --------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 67889999999999776 77666654
No 122
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=2.3e-11 Score=106.52 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=83.5
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEcccccccc-ccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|..+..+++... .+++++|+++.+++.++++++.. .++.++++|+.+++. +..++||.|+++.++..
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~ 325 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSA 325 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCc
Confidence 4999999999999999998753 59999999999999999998532 246889999987642 23568999998765432
Q ss_pred ec--cC------CCCh-------HHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LL--CG------SNSR-------QNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~--~~------~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. .. .... ..+..+++.+.+.|+|||++++.+.
T Consensus 326 ~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 326 TGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 10 00 0111 2245789999999999999999885
No 123
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.33 E-value=9.1e-12 Score=97.24 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=73.2
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-------cccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-------~~~~~~fD~I~~ 119 (237)
.+|||+|||+|.++..+++.. ..+++++|+|+.+ . .+++.++++|+.+.. .++.++||+|++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 499999999999999888764 2379999999864 1 256788888886632 134668999999
Q ss_pred ccccceecc-CC---CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 120 KGTLDSLLC-GS---NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 120 ~~~l~~~~~-~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+.+.+.... .. ........++.++.++|+|||++++..+..
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 754321100 00 011235789999999999999999876443
No 124
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.33 E-value=4.4e-12 Score=96.42 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=71.2
Q ss_pred EEEeCCHHHHHHHHHHcC--C---CCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcC
Q 026558 74 VNVDISSVVIEAMMKKYS--N---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK 148 (237)
Q Consensus 74 ~~vD~s~~~~~~a~~~~~--~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~ 148 (237)
+|+|+|+.|++.|+++.. . ..+++++++|+.+++ +++++||+|++..+++++ .+...++++++|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~-------~d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNV-------VDRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcC-------CCHHHHHHHHHHHcC
Confidence 489999999999987753 1 246899999999998 888899999999999988 788999999999999
Q ss_pred CCcEEEEEEcCCch
Q 026558 149 DKGVYILVTYGAPI 162 (237)
Q Consensus 149 pgG~l~~~~~~~~~ 162 (237)
|||.+++.++..+.
T Consensus 73 pGG~l~i~d~~~~~ 86 (160)
T PLN02232 73 PGSRVSILDFNKSN 86 (160)
T ss_pred cCeEEEEEECCCCC
Confidence 99999999877654
No 125
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.32 E-value=1.5e-11 Score=101.39 Aligned_cols=111 Identities=16% Similarity=0.239 Sum_probs=83.2
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCccE
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
.++.+.+||+||||+|..+..+++.. ..+++++|+++.+++.+++.+.. .+++++...|..+......++||+
T Consensus 69 ~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 69 THPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred cCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 34444599999999999999988875 45899999999999999997632 256888888887643223578999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+++...... ....-....+++.+.+.|+|||++++..
T Consensus 149 Ii~D~~~~~~---~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDPVG---PAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCCCCC---cccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9997642211 0011125788999999999999999874
No 126
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.32 E-value=4.1e-11 Score=98.44 Aligned_cols=111 Identities=13% Similarity=0.136 Sum_probs=83.8
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ...++++|+++.+++.++++++ +..++.++..|+..++ ...+.||+|+++.+..
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-AAVPKFDAILLDAPCS 151 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-hhccCCCEEEEcCCCC
Confidence 499999999999999988753 2489999999999999999985 3347889999987765 3345799999976543
Q ss_pred eec--cCC------CCh-------HHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLL--CGS------NSR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~--~~~------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
... ... .+. ..+.++|+++.+.|+|||+++..|.+-
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 210 000 011 134569999999999999999987543
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=4.1e-11 Score=100.52 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=74.9
Q ss_pred CcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++... ..++++|+++.+++.|++++. +..++.++++|+.+.. ...+.||+|++...+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-PEFAPYDVIFVTVGVD 160 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc-cccCCccEEEECCchH
Confidence 4999999999999999988642 369999999999999998874 3357889999987654 3346799999875443
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+ ...+.+.|+|||++++..
T Consensus 161 ~i-------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 161 EV-------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred Hh-------------HHHHHHhcCCCCEEEEEe
Confidence 22 334678999999988854
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=99.30 E-value=2.9e-11 Score=101.72 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=83.8
Q ss_pred CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHc--C-------CCCCcEEEEccccccccccCCCcc
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKY--S-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~--~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..+++||++|||+|..+..+++.. ..+++++|+++++++.|++.. . ..++++++.+|+.+......++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 344599999999999999998875 459999999999999999721 1 246899999999885423457899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+|+++.+ +.. ..........++++.+.+.|+|||++++...
T Consensus 229 VIIvDl~-DP~-~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFP-DPA-TELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCC-Ccc-ccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999843 211 0001223457799999999999999988753
No 129
>PLN02672 methionine S-methyltransferase
Probab=99.30 E-value=2.2e-11 Score=115.18 Aligned_cols=157 Identities=14% Similarity=0.049 Sum_probs=107.3
Q ss_pred CCChhhhHHHhccCCCCceeecCCcChHHHHHhhCCC--CCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHH
Q 026558 10 YGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPS--HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAM 86 (237)
Q Consensus 10 ~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a 86 (237)
.+.+.||...+...+..+.-+...+.+.+.+...... +..+|||+|||+|.+++.+++.. ..+++++|+|+.+++.|
T Consensus 79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A 158 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVA 158 (1082)
T ss_pred CCeEEecCCceeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 3556677777776666654221122233333221111 11389999999999999999875 35999999999999999
Q ss_pred HHHcCCC------------------CCcEEEEccccccccccCCCccEEEeccccc------------------------
Q 026558 87 MKKYSNR------------------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD------------------------ 124 (237)
Q Consensus 87 ~~~~~~~------------------~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~------------------------ 124 (237)
++|.... .+++++++|+.+.......+||+|+++.+.-
T Consensus 159 ~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~ 238 (1082)
T PLN02672 159 WINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSL 238 (1082)
T ss_pred HHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccccccc
Confidence 9998421 2589999999765311123699999986621
Q ss_pred ----eecc---CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhh
Q 026558 125 ----SLLC---GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166 (237)
Q Consensus 125 ----~~~~---~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~ 166 (237)
.+.. +.++......++.++.++|+|||.+++.....+.....
T Consensus 239 ~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~ 287 (1082)
T PLN02672 239 SNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVC 287 (1082)
T ss_pred CccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHH
Confidence 0111 24666778899999999999999999888666555444
No 130
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.29 E-value=3.6e-11 Score=94.31 Aligned_cols=103 Identities=9% Similarity=0.060 Sum_probs=77.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.+++.++.++..+++++|+++.+++.++++++. ..+++++++|+.+.......+||+|+++.++..
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~- 133 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK- 133 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC-
Confidence 49999999999999977666656999999999999999999742 347899999997643122456999999987431
Q ss_pred ccCCCChHHHHHHHHHHHH--hcCCCcEEEEEEcC
Q 026558 127 LCGSNSRQNATQMLKEVWR--VLKDKGVYILVTYG 159 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~~ 159 (237)
.....+++.+.. +|.|+|++++....
T Consensus 134 -------g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 134 -------GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -------ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 223344454444 47899988887643
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=6.4e-11 Score=104.22 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=83.3
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ..+++++|+|+.+++.++++++ +..+++++++|+.+++ +.++||+|+++.+..
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDAPCT 329 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcCCCC
Confidence 499999999999998887742 2489999999999999999985 3346889999998774 456899999865432
Q ss_pred eec--cCC------CChH-------HHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLL--CGS------NSRQ-------NATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~--~~~------~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
... ... .+++ .+..+|.++.+.|+|||++++.|.+-
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 110 000 0111 34568999999999999999998654
No 132
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=7.7e-11 Score=103.77 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=82.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++++ +..++.++++|+.+......++||+|+++.+..
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPCS 331 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCCC
Confidence 489999999999999998863 3599999999999999999884 334689999999876421127899999986532
Q ss_pred eec--cC------CCChH-------HHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLL--CG------SNSRQ-------NATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~--~~------~~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
... .. ..+.. ....+|+++.++|+|||.++..+..
T Consensus 332 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 332 GLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 210 00 00111 2356899999999999999987753
No 133
>PLN02366 spermidine synthase
Probab=99.28 E-value=4.9e-11 Score=99.51 Aligned_cols=109 Identities=17% Similarity=0.275 Sum_probs=83.6
Q ss_pred CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEcccccccc-ccCCCccEE
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDE-FQTGSFDSV 117 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~-~~~~~fD~I 117 (237)
+.+++||+||||.|..+..++++. ..+++.+|+++.+++.|++.+.. .++++++.+|+..... .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 444599999999999999999875 35899999999999999998732 3689999999876531 235689999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++..-... ....-....+++.+.++|+|||+++.+.
T Consensus 170 i~D~~dp~~---~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVG---PAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 997543211 1111235678999999999999998754
No 134
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=5.9e-11 Score=104.14 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=83.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc---ccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE---FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~ 121 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++. +..++.++++|+.+++. +..++||.|+++.
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~Da 333 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDA 333 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeC
Confidence 499999999999999998863 3489999999999999999985 33478999999987642 2356899999875
Q ss_pred ccceecc--CCC------ChH-------HHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 122 TLDSLLC--GSN------SRQ-------NATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 122 ~l~~~~~--~~~------~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+...... ..+ ++. .+.++|+++.+.|||||+++..|.+
T Consensus 334 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 334 PCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 5321100 000 111 2578999999999999999988753
No 135
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.26 E-value=2.1e-12 Score=100.50 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=86.8
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-ccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-FQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-~~~~~f 114 (237)
+.++|...-...=.++||||||||-.+..+...- .+++|+|||+.|++.|.++-- --...+.|+..+.. ..+++|
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~---YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGL---YDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccc---hHHHHHHHHHHHhhhccCCcc
Confidence 5555655433322599999999999998887774 489999999999999998841 11234455543332 457899
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|+|++..++.++ -....++.-+...|+|||.+.++.-
T Consensus 190 DLi~AaDVl~Yl-------G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 190 DLIVAADVLPYL-------GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred cchhhhhHHHhh-------cchhhHHHHHHHhcCCCceEEEEec
Confidence 999999999998 7888999999999999999998763
No 136
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.26 E-value=2.4e-11 Score=95.88 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=80.0
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~ 111 (237)
...++..+..+++.+|||||||+|..+..++... ...++++|+.+...+.|++++. +..++.++++|..... ...
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~-~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW-PEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT-GGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc-ccC
Confidence 4455555544444599999999999999888763 2379999999999999999985 4458999999987654 345
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..||.|++......+ =..+.+.|++||++++...
T Consensus 140 apfD~I~v~~a~~~i-------------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEI-------------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS---------------HHHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchH-------------HHHHHHhcCCCcEEEEEEc
Confidence 789999998766543 2346778999999998764
No 137
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.26 E-value=8.7e-11 Score=102.85 Aligned_cols=112 Identities=15% Similarity=0.221 Sum_probs=79.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCC-CcEE--EEcccccccc-ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRP-QLKY--IKMDVRQMDE-FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~-~~~~--~~~d~~~~~~-~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++++... .+.+ ..+|....+. ...++||.|+++.+.
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPc 319 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPC 319 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCC
Confidence 499999999999999998864 3599999999999999999985311 2333 5566654431 145789999987543
Q ss_pred ceecc--CCC------Ch-------HHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLC--GSN------SR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~--~~~------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
..... ..+ .+ ..+..+|+++.++|+|||++++.|.+-
T Consensus 320 Sg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 320 SATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 32100 000 11 125779999999999999999988644
No 138
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.25 E-value=8.8e-11 Score=101.35 Aligned_cols=119 Identities=15% Similarity=0.215 Sum_probs=86.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC--CCcEEEEccccccc-cc--
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQMD-EF-- 109 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~--~~~~~~~~d~~~~~-~~-- 109 (237)
+..+.... ++. +|||+|||+|.+++.++..+..+++++|+|+.+++.|++++. +. .+++++++|+.+.. .+
T Consensus 212 R~~~~~~~-~g~-rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~ 289 (396)
T PRK15128 212 RLATRRYV-ENK-RVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_pred HHHHHHhc-CCC-eEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh
Confidence 33444443 343 899999999999988776665599999999999999999984 22 36889999998753 12
Q ss_pred cCCCccEEEeccccceeccCC----CChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 110 QTGSFDSVVDKGTLDSLLCGS----NSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
..++||+|+++.+.-.- .. ........++..+.++|+|||.++..+.+
T Consensus 290 ~~~~fDlVilDPP~f~~--~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVE--NKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred cCCCCCEEEECCCCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 24689999999764221 00 00124566777889999999999887654
No 139
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.25 E-value=6.4e-11 Score=92.99 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=79.0
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCC---------------------------------
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQ--------------------------------- 95 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~--------------------------------- 95 (237)
.+|||||.+|.++..+++.. ...+.|+||++..++.|++++.....
T Consensus 61 ~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~ 140 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTTD 140 (288)
T ss_pred eeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccccc
Confidence 89999999999999999985 44899999999999999998842111
Q ss_pred ----cEEEEccc----cccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 96 ----LKYIKMDV----RQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 96 ----~~~~~~d~----~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.|...+. .++..+....||+|+|-.+--+++ .+.+.+-...+++.+.++|.|||+|++..
T Consensus 141 ~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIH-LNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 141 FPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIH-LNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred CCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEe-cccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 11111111 001113467899999977655542 23456788999999999999999998864
No 140
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.23 E-value=3.7e-10 Score=93.98 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=93.7
Q ss_pred hHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC--CCcEEEEc-cccccccccC
Q 026558 36 LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKM-DVRQMDEFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~--~~~~~~~~-d~~~~~~~~~ 111 (237)
+...+-.+..... ..|||.-||||.+++.+.-.|. .++|+|++..|++-|+.|++.. ....+... |+.+++ +++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l~~ 262 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-LRD 262 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-CCC
Confidence 4444444443333 3999999999999999988875 9999999999999999999754 35555555 999999 888
Q ss_pred CCccEEEeccccceeccCCCC--hHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNS--RQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.++|.|++..+..-....... .+...++|+.+.++|++||++++...
T Consensus 263 ~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 263 NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 889999999876543211111 35578899999999999999999875
No 141
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.22 E-value=1.7e-10 Score=93.52 Aligned_cols=96 Identities=17% Similarity=0.272 Sum_probs=81.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||||+|.|.++..+++.. ..+++..|. |.+++.+++ .++++++.+|+.+ + ++. +|+++...+||.+
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~-~-~P~--~D~~~l~~vLh~~- 171 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFD-P-LPV--ADVYLLRHVLHDW- 171 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTT-C-CSS--ESEEEEESSGGGS-
T ss_pred cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHh-h-hcc--ccceeeehhhhhc-
Confidence 489999999999999999886 349999998 999999998 3799999999983 2 444 9999999999998
Q ss_pred cCCCChHHHHHHHHHHHHhcCCC--cEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDK--GVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pg--G~l~~~~~ 158 (237)
+.++...+|+++.+.|+|| |++++...
T Consensus 172 ----~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 172 ----SDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp -----HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ----chHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 7889999999999999999 99999774
No 142
>PRK03612 spermidine synthase; Provisional
Probab=99.21 E-value=1.2e-10 Score=104.20 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=83.3
Q ss_pred CCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHc--C-------CCCCcEEEEccccccccccCCCcc
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKY--S-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~--~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
+++++|||+|||+|..+..++++.. .+++++|+++++++.++++. . ..++++++.+|+.+......++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3345999999999999999998753 69999999999999999942 1 136789999999875423457899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+++.+-... .........++++.+.++|+|||++++..
T Consensus 376 vIi~D~~~~~~--~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSN--PALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCC--cchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99998543211 00011234678999999999999998865
No 143
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.21 E-value=1.2e-10 Score=93.15 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=77.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.++||||+|.|..+..++... .+++++|+|+.|....+++ +.+++ +..++. -.+.+||+|.|-++|+.-
T Consensus 96 ~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~k-----g~~vl--~~~~w~-~~~~~fDvIscLNvLDRc-- 164 (265)
T PF05219_consen 96 KSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSKK-----GFTVL--DIDDWQ-QTDFKFDVISCLNVLDRC-- 164 (265)
T ss_pred CceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHhC-----CCeEE--ehhhhh-ccCCceEEEeehhhhhcc--
Confidence 489999999999999998775 4999999999998888876 33433 444444 235689999999999988
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..+..+|+.+++.|+|+|++++..
T Consensus 165 -----~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 165 -----DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred -----CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 889999999999999999998864
No 144
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.19 E-value=1e-10 Score=94.31 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=78.3
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccc-cc----cCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMD-EF----QTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~-~~----~~~~fD~I~ 118 (237)
++|||+|||+|..+..++... ..+++++|+++++++.|+++++. ..+++++.+|+.+.. .+ +.++||+|+
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~Vf 149 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAF 149 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEE
Confidence 489999999999888887652 35999999999999999999853 246899999997642 11 246899998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.... ......+++.+.+.|+|||++++-
T Consensus 150 iDa~----------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 150 VDAD----------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred ECCC----------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8643 245678899999999999998763
No 145
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.19 E-value=4.4e-10 Score=98.95 Aligned_cols=98 Identities=16% Similarity=0.292 Sum_probs=75.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-c--ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-E--FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~--~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|++++. +..+++++++|+.+.. . +..++||+|+++.+-
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr 377 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPR 377 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCC
Confidence 499999999999999999886 499999999999999999874 3357999999997532 1 335679999998654
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.- ....++.+.+ ++|++++++...
T Consensus 378 ~g----------~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 378 AG----------AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred cC----------hHHHHHHHHh-cCCCeEEEEEeC
Confidence 32 2345554544 688888877763
No 146
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.17 E-value=2.6e-10 Score=89.08 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=80.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-C-CCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.++||.|+|-|+.+..++-..+.+|-.+|..+..++.|++.+.. . .-.++.+..+.++. ....+||+|++-.++.|+
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~-P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT-PEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEEES-GGGS
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc-CCCCcEeEEEehHhhccC
Confidence 49999999999999988766567999999999999999988754 2 23567888888875 335799999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.++..++|+++...|+|+|.+++-.
T Consensus 136 -----TD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 136 -----TDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp ------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----CHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 88999999999999999999999844
No 147
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=5.5e-10 Score=84.97 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=65.5
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.|+|+|||||.+++..+-.|...|+++|+++++++.++++.+ ...+++|+.+|+.+.. ..+|.++.+.++...
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~----~~~dtvimNPPFG~~ 121 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR----GKFDTVIMNPPFGSQ 121 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----CccceEEECCCCccc
Confidence 799999999999999999997799999999999999999985 3457999999999985 678999999988755
No 148
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.14 E-value=1.3e-09 Score=91.86 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=73.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++++ +..+++|+++|+.++.....+.||+|+++.+-.-+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~ 253 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRGI 253 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCCc
Confidence 489999999999999999987 499999999999999999984 33579999999987642223579999998652211
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...+.++...+.|++++++...
T Consensus 254 ----------~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 254 ----------GKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred ----------cHHHHHHHHHcCCCeEEEEECC
Confidence 2222233344678777776654
No 149
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.14 E-value=2.7e-10 Score=89.22 Aligned_cols=111 Identities=20% Similarity=0.281 Sum_probs=80.1
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-c-ccCCCccEEEeccccc
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-E-FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~-~~~~~fD~I~~~~~l~ 124 (237)
.+||||||.|.++..+++.. ...++|+|++...+..+.+++. +..|+.++++|+..+. . ++++++|.|+...+==
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 89999999999999999875 3499999999999999988874 5679999999998733 2 4568899998764311
Q ss_pred eeccCCC--ChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 125 SLLCGSN--SRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 125 ~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+. -.-+ -+-....+++.+.++|+|||.+.+.|-...
T Consensus 100 Wp-K~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 100 WP-KKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred Cc-ccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 10 0000 011345699999999999999999985553
No 150
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.14 E-value=2.5e-10 Score=97.56 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=95.1
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C--CCCcEEEEccccccccc--
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N--RPQLKYIKMDVRQMDEF-- 109 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~d~~~~~~~-- 109 (237)
.+..+...+. ++ +||++-|=||.+++.++..|..+++.||+|..++++|++|++ + ....+++++|+.++...
T Consensus 208 ~R~~l~~~~~-Gk-rvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 208 NRRALGELAA-GK-RVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred HHHHHhhhcc-CC-eEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH
Confidence 4555666555 54 999999999999999999987799999999999999999985 2 23578999999886422
Q ss_pred -cCCCccEEEeccccceeccC--CCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 110 -QTGSFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 110 -~~~~fD~I~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
...+||+|+.+.+--.--.. ..-..+...++..+.++|+|||++++.+....
T Consensus 286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 286 RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 23589999998652111000 01235778899999999999999999886553
No 151
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.4e-09 Score=81.90 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=100.3
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHc
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~ 90 (237)
+.-.+.+|+.-.+.|--. +.+..-...+.......++|||||+|..+.++++.- ...+.++|++|.+++..++..
T Consensus 12 ~~~f~dVYEPaEDTFlLl---DaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA 88 (209)
T KOG3191|consen 12 RLDFSDVYEPAEDTFLLL---DALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETA 88 (209)
T ss_pred hhhhhhccCccchhhHHH---HHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH
Confidence 333467777776665421 112222222222223489999999999999998863 457899999999999988777
Q ss_pred C-CCCCcEEEEccccccccccCCCccEEEecccccee--------------ccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 91 S-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL--------------LCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 91 ~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~--------------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
. +..+++.++.|+.... ..++.|+++-+.+.-.- ..+.++++-..+++..+-.+|.|.|.+++
T Consensus 89 ~~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 89 RCNRVHIDVVRTDLLSGL--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred HhcCCccceeehhHHhhh--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 4 3356888999998764 45899999998664221 23345666778889999999999999999
Q ss_pred EEcCC
Q 026558 156 VTYGA 160 (237)
Q Consensus 156 ~~~~~ 160 (237)
+....
T Consensus 167 v~~~~ 171 (209)
T KOG3191|consen 167 VALRA 171 (209)
T ss_pred eehhh
Confidence 87544
No 152
>PLN02823 spermine synthase
Probab=99.11 E-value=9e-10 Score=92.93 Aligned_cols=112 Identities=20% Similarity=0.278 Sum_probs=84.0
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCccEE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
.+.+++||.||+|.|..+.++++.. ..+++.+|+++.+++.|++.+.. .++++++.+|+........++||+|
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3344589999999999999998864 45899999999999999998842 4689999999988643446789999
Q ss_pred EeccccceeccCCCChHHHHHHHH-HHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLK-EVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~ 157 (237)
++... +....++...-...++++ .+.+.|+|||++++..
T Consensus 181 i~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 181 IGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99842 211000001123457787 8999999999998764
No 153
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.11 E-value=1.6e-09 Score=84.01 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=67.9
Q ss_pred CCcChHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc
Q 026558 32 KYPSLAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 32 ~~~~~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 110 (237)
+..++..++..+...+. ..|.|+|||.+.++..+. .++ .|...|+-+ .+-.+..+|+.+.| ++
T Consensus 56 P~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva-------------~n~~Vtacdia~vP-L~ 119 (219)
T PF05148_consen 56 PVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA-------------PNPRVTACDIANVP-LE 119 (219)
T ss_dssp SS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S----EEEEESS--------------SSTTEEES-TTS-S---
T ss_pred CCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC-------------CCCCEEEecCccCc-CC
Confidence 55566666766654443 389999999999986654 223 799999855 24468889999999 89
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+++.|+++....|.. .+...++.++.|+|||||.+.+.....
T Consensus 120 ~~svDv~VfcLSLMG--------Tn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 120 DESVDVAVFCLSLMG--------TNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp TT-EEEEEEES---S--------S-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CCceeEEEEEhhhhC--------CCcHHHHHHHHheeccCcEEEEEEecc
Confidence 999999999666543 578999999999999999999987543
No 154
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.10 E-value=3.9e-10 Score=88.14 Aligned_cols=102 Identities=21% Similarity=0.330 Sum_probs=70.1
Q ss_pred cEEEEccCCch----hHHHHHHc-----C-CCeEEEEeCCHHHHHHHHHHc------C---------------C------
Q 026558 50 RILIVGCGNSA----FSEGMVDD-----G-YEDVVNVDISSVVIEAMMKKY------S---------------N------ 92 (237)
Q Consensus 50 ~iLdlG~G~G~----~~~~~~~~-----~-~~~~~~vD~s~~~~~~a~~~~------~---------------~------ 92 (237)
+|+..||++|. +++.+.+. + ..+++|+|+|+.+++.|++-. . +
T Consensus 34 rIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~ 113 (196)
T PF01739_consen 34 RIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVK 113 (196)
T ss_dssp EEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-
T ss_pred EEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEC
Confidence 99999999994 33444441 1 239999999999999998332 0 1
Q ss_pred ---CCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 93 ---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 93 ---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+.|.+.|+.+.+ ...+.||+|+|.+++-++ +.+....+++.+++.|+|||.|++-.
T Consensus 114 ~~lr~~V~F~~~NL~~~~-~~~~~fD~I~CRNVlIYF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 114 PELRKMVRFRRHNLLDPD-PPFGRFDLIFCRNVLIYF-----DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred hHHcCceEEEecccCCCC-cccCCccEEEecCEEEEe-----CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 025889999998832 457899999999999998 77888999999999999999998854
No 155
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.10 E-value=1.2e-09 Score=90.08 Aligned_cols=103 Identities=14% Similarity=0.213 Sum_probs=79.1
Q ss_pred cEEEEccCCch----hHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHcC-------------------------C---
Q 026558 50 RILIVGCGNSA----FSEGMVDDG-----YEDVVNVDISSVVIEAMMKKYS-------------------------N--- 92 (237)
Q Consensus 50 ~iLdlG~G~G~----~~~~~~~~~-----~~~~~~vD~s~~~~~~a~~~~~-------------------------~--- 92 (237)
+|+..||+||. +++.+.+.. ..+++|+|||+.+++.|++-.- +
T Consensus 118 rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~ 197 (287)
T PRK10611 118 RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVR 197 (287)
T ss_pred EEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEE
Confidence 99999999994 333344431 2389999999999999985520 0
Q ss_pred -----CCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 93 -----RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 93 -----~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+.|.+.|+.+.+....+.||+|+|.+++.|+ +.+....+++.+.+.|+|||+|++-.
T Consensus 198 v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 198 VRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-----DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-----CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0246788888876441235789999999999888 77889999999999999999887653
No 156
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.08 E-value=2e-09 Score=88.12 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=62.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+++.++++|+.+.+ ++ .||.|+++.+++
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~-~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD-LP--EFNKVVSNLPYQ 102 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC-ch--hceEEEEcCCcc
Confidence 4999999999999999999864 999999999999999998865568999999998876 43 489999987764
No 157
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.08 E-value=1.1e-09 Score=85.23 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=91.2
Q ss_pred CcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CCCCcE-EEEcccccccc
Q 026558 33 YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLK-YIKMDVRQMDE 108 (237)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~~~~~-~~~~d~~~~~~ 108 (237)
.+.+.+.++..++....+|||||||||....++++... ....-.|.++..+...+.... +.+|+. .+..|+...+.
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW 90 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC
Confidence 34477788888777762499999999999999999863 367788999888766665542 334443 45667765420
Q ss_pred -------ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 109 -------FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 109 -------~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+..+.||.|++.+++|-+ +++....+++.+.++|++||.|++-
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~-----p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHIS-----PWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhc-----CHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 135689999999999888 8899999999999999999999874
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.08 E-value=1.1e-09 Score=86.44 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=85.4
Q ss_pred ChHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEE-ccccccc
Q 026558 35 SLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIK-MDVRQMD 107 (237)
Q Consensus 35 ~~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~-~d~~~~~ 107 (237)
.-..++..++. .+.++|||||++.|..+++++... ..+++.+|++++..+.|+++++.. +.+..+. +|+.+..
T Consensus 46 e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 46 ETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred hHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 33444444332 233499999999999999998865 358999999999999999999532 3477777 5886653
Q ss_pred c-ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 108 E-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 108 ~-~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
. ...++||+||... ...+...+++.+.++|+|||++++-
T Consensus 126 ~~~~~~~fDliFIDa----------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 126 SRLLDGSFDLVFIDA----------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HhccCCCccEEEEeC----------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 2 3468999998864 3467789999999999999999873
No 159
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.07 E-value=2.6e-09 Score=88.10 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=61.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. ++++++++|+.+++ +++-.+|.|+++.+..
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~-~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVD-LSELQPLKVVANLPYN 116 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCC-HHHcCcceEEEeCCcc
Confidence 4899999999999999999976 999999999999999998754 68999999999876 4332268899886643
No 160
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.04 E-value=3.4e-09 Score=86.57 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=65.8
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCcc-
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD- 115 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD- 115 (237)
..++......+..+|||+|||+|.++..+++.+. .++++|+++.+++.+++++...+++.++.+|+.+.+ ++ .+|
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~-~~--~~d~ 94 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVD-LP--DFPK 94 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCC-hh--HcCC
Confidence 4444443333334999999999999999999975 799999999999999988755568999999998876 33 456
Q ss_pred --EEEeccccc
Q 026558 116 --SVVDKGTLD 124 (237)
Q Consensus 116 --~I~~~~~l~ 124 (237)
+|+++.+++
T Consensus 95 ~~~vvsNlPy~ 105 (253)
T TIGR00755 95 QLKVVSNLPYN 105 (253)
T ss_pred cceEEEcCChh
Confidence 888876643
No 161
>PLN02476 O-methyltransferase
Probab=99.04 E-value=2.9e-09 Score=87.24 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=80.0
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccc-cc----cCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMD-EF----QTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~-~~----~~~~fD~I~ 118 (237)
++|||+|+++|..++++++.. ..+++.+|.+++..+.|+++++. ..+++++.+|+.+.. .+ ..++||+||
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VF 199 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAF 199 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEE
Confidence 489999999999999998752 34899999999999999999952 247999999997642 22 136899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.... ..+...+++.+.+.|+|||++++-
T Consensus 200 IDa~----------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 200 VDAD----------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred ECCC----------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 8753 367788999999999999998773
No 162
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=3.8e-09 Score=84.12 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCCCCcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCC--CC-CcEEEEccccccccccCCCccEEEe
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN--RP-QLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~--~~-~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.++. +|||.|.|+|.++..++.. + ..+++.+|+.++..+.|++|++. .. ++.+..+|+.+.. + ...||+|+.
T Consensus 93 ~pg~-rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-~-~~~vDav~L 169 (256)
T COG2519 93 SPGS-RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-D-EEDVDAVFL 169 (256)
T ss_pred CCCC-EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-c-ccccCEEEE
Confidence 4444 9999999999999999963 3 35999999999999999999953 33 4888889998875 3 348999988
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+. .++.++++++.++|+|||.+++....-.
T Consensus 170 Dm------------p~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 170 DL------------PDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cC------------CChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 53 5778899999999999999988764433
No 163
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.02 E-value=4.4e-10 Score=87.72 Aligned_cols=101 Identities=19% Similarity=0.281 Sum_probs=88.5
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccC
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~ 129 (237)
.++|||||-|.+...+...+..+++.+|.|-.|++.++..-...-.+....+|-..++ |.++++|+|+++..+|+.
T Consensus 75 ~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld-f~ens~DLiisSlslHW~--- 150 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD-FKENSVDLIISSLSLHWT--- 150 (325)
T ss_pred ceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhccc-ccccchhhhhhhhhhhhh---
Confidence 8999999999999999998877999999999999999876432224567788888888 999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 130 SNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 130 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.++...+.++...|||+|.++...+
T Consensus 151 ----NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 151 ----NDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred ----ccCchHHHHHHHhcCCCccchhHHh
Confidence 8889999999999999999987544
No 164
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.02 E-value=1.1e-09 Score=86.35 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=79.5
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccc-cc----cCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMD-EF----QTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~-~~----~~~~fD~I~ 118 (237)
++||||||++|..+.++++.- .++++.+|++++..+.|++.+.. ..+++++.+|+.+.. .+ ..+.||+||
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VF 126 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVF 126 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEE
Confidence 489999999999999999863 35999999999999999998852 247999999997642 11 135799999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.. ..+...+++.+.++|+|||++++-.
T Consensus 127 iDa~----------K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 127 IDAD----------KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEST----------GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred Eccc----------ccchhhHHHHHhhhccCCeEEEEcc
Confidence 8753 3567888999999999999998743
No 165
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.02 E-value=2.4e-09 Score=85.35 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=83.6
Q ss_pred cEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc--ccCCCccEEEeccccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~ 124 (237)
.+||||||.|.++..+|+..+ ..++|||+....+..|.+++. +..|+.+++.|+..+.. +++++.|-|+.+.+
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-- 128 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-- 128 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC--
Confidence 899999999999999999863 489999999999999998884 33499999999987543 34558999987643
Q ss_pred eeccCCCChH-------HHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSRQ-------NATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++.+.. -...+++.+.++|+|||.+.+.|-..
T Consensus 129 ----DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 129 ----DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred ----CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 221211 34569999999999999999998544
No 166
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.01 E-value=1.6e-09 Score=83.80 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=75.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCe---------EEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCcc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YED---------VVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~---------~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..|||..||+|.+.++.+..+ ... ++|+|+++.+++.|++|+.. ...+.+.+.|+.+++ +..+.+|
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~-~~~~~~d 108 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP-LPDGSVD 108 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-GTTSBSC
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-cccCCCC
Confidence 489999999999999887654 223 88999999999999999852 235789999999998 7788999
Q ss_pred EEEeccccceeccCC-CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+++.++..-.... ........+++++.++|++ ..+++.+
T Consensus 109 ~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 109 AIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp EEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred EEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 999998876432110 1134556788999999998 4444443
No 167
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.01 E-value=4.7e-09 Score=80.78 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=70.8
Q ss_pred CcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCC-----CCCcEEEEccccccc---cccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMD---EFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~---~~~~~~fD~I~~ 119 (237)
.+|||||||+|..++.++.. +..+|+.+|.++ .++.++.++.. ..++.+...|..+.. .....+||+|+.
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ila 125 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILA 125 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEE
T ss_pred ceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEE
Confidence 49999999999999999988 556999999999 99999988742 246778777765421 134568999999
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..++..- +....+++.+.++|+++|.+++..
T Consensus 126 sDv~Y~~-------~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 126 SDVLYDE-------ELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp ES--S-G-------GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred ecccchH-------HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9988765 888999999999999999866655
No 168
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.00 E-value=7.6e-09 Score=89.12 Aligned_cols=99 Identities=11% Similarity=0.141 Sum_probs=75.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.++..++..+ .+++|+|+++.+++.|+++.+ +..++++.++|+.+.......+||+|+.+.+-..+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 489999999999999999876 499999999999999999984 33478999999976531122469999998764322
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...+++.+. .++|++++++...
T Consensus 314 ---------~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 314 ---------GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---------cHHHHHHHH-hcCCCeEEEEEeC
Confidence 234444444 4789888887763
No 169
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.99 E-value=5.6e-09 Score=91.74 Aligned_cols=98 Identities=11% Similarity=0.210 Sum_probs=73.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-c--ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-E--FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~--~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++... +++|+|+++.+++.|++++. +..+++++.+|+.+.. . +...+||+|+.+.+-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 4899999999999999998764 89999999999999999874 3458999999997632 1 234579999987552
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.-+ ...+++.+. .++|++++++..
T Consensus 373 ~G~---------~~~~l~~l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 373 KGC---------AAEVLRTII-ELKPERIVYVSC 396 (431)
T ss_pred CCC---------CHHHHHHHH-hcCCCEEEEEcC
Confidence 211 244555544 378888776654
No 170
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.99 E-value=4.6e-09 Score=86.40 Aligned_cols=112 Identities=21% Similarity=0.313 Sum_probs=88.6
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCcc
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..++..++||-||.|.|..+.+++++. ..+++.+||++.+++.|++.+.. .++++++..|..++-.-...+||
T Consensus 72 ~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 72 LAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred hhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 334444599999999999999999987 56999999999999999999842 36889999999886533344899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+++..=. . ++...-....+++.+.++|+++|+++..+
T Consensus 152 vIi~D~tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 152 VIIVDSTDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEEcCCCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 999985422 2 22222356889999999999999999984
No 171
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.99 E-value=1e-08 Score=84.80 Aligned_cols=85 Identities=9% Similarity=0.126 Sum_probs=67.2
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCC-
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG- 112 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~- 112 (237)
+.+.+..+...++..+||.+||.|..+..+++.. ..+|+|+|.++.+++.|++++....++.++++|+.++......
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcC
Confidence 3556666654444599999999999999999885 3599999999999999999885445789999999886532222
Q ss_pred --CccEEEec
Q 026558 113 --SFDSVVDK 120 (237)
Q Consensus 113 --~fD~I~~~ 120 (237)
++|.|+.+
T Consensus 88 ~~~vDgIl~D 97 (296)
T PRK00050 88 LGKVDGILLD 97 (296)
T ss_pred CCccCEEEEC
Confidence 79999986
No 172
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.99 E-value=1.6e-09 Score=84.03 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=78.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccc-cc--cCCCccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMD-EF--QTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~-~~--~~~~fD~I~~~~~ 122 (237)
.++||+.||+|.++.+++++|..+++.+|.++.+++..+++++. . ..+.++..|+.... .. ...+||+|+.+.+
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPP 123 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPP 123 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--S
T ss_pred CeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCC
Confidence 49999999999999999999978999999999999999999852 1 25788899975432 12 4689999999988
Q ss_pred cceeccCCCChHHHHHHHHHHH--HhcCCCcEEEEEEcCC
Q 026558 123 LDSLLCGSNSRQNATQMLKEVW--RVLKDKGVYILVTYGA 160 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~ 160 (237)
...- .....+++.+. .+|+++|.+++.....
T Consensus 124 Y~~~-------~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 124 YAKG-------LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp TTSC-------HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred cccc-------hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 7643 22466777776 7899999998877433
No 173
>PRK04148 hypothetical protein; Provisional
Probab=98.96 E-value=2.2e-08 Score=72.88 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=75.3
Q ss_pred hHHHHHhhCCCCC-CcEEEEccCCch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCC
Q 026558 36 LAPLIKLYVPSHH-QRILIVGCGNSA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 36 ~~~~l~~~~~~~~-~~iLdlG~G~G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (237)
+.+++....+... .+|||+|||+|. ++..+++.|+ +|+++|+++..++.++++ .+.++++|+.+...-.-+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~y~~ 77 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEIYKN 77 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHHHhc
Confidence 4555555544332 489999999995 8888888886 999999999999999887 3689999998876222467
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+|+|.+..+ +......+.++.+.+. .-+++..+
T Consensus 78 a~liysirp----------p~el~~~~~~la~~~~--~~~~i~~l 110 (134)
T PRK04148 78 AKLIYSIRP----------PRDLQPFILELAKKIN--VPLIIKPL 110 (134)
T ss_pred CCEEEEeCC----------CHHHHHHHHHHHHHcC--CCEEEEcC
Confidence 999998643 3445555555555544 45666554
No 174
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.94 E-value=1e-08 Score=80.03 Aligned_cols=102 Identities=9% Similarity=0.026 Sum_probs=75.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccc-cc-cC-CCccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMD-EF-QT-GSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~-~~-~~-~~fD~I~~~~~ 122 (237)
.++||++||+|.++..++.++...++++|.++.+++.++++++. . .+++++++|+.+.. .+ .. ..||+|+...+
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP 130 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP 130 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC
Confidence 38999999999999999999876999999999999999998842 2 36789999996542 12 12 24899998877
Q ss_pred cceeccCCCChHHHHHHHHHHH--HhcCCCcEEEEEEc
Q 026558 123 LDSLLCGSNSRQNATQMLKEVW--RVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 158 (237)
+.. .....+++.+. .+|+++|++++...
T Consensus 131 y~~--------~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 131 FFN--------GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CCC--------CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 642 22344444443 46888888877653
No 175
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.94 E-value=4.6e-09 Score=86.51 Aligned_cols=124 Identities=18% Similarity=0.250 Sum_probs=87.4
Q ss_pred cChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C--CCCcEEEEcccccccc-
Q 026558 34 PSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N--RPQLKYIKMDVRQMDE- 108 (237)
Q Consensus 34 ~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~d~~~~~~- 108 (237)
...+.++..... +. +|||+-|=||.++..++..|..+++.+|.|..+++++++++. + ...+++++.|+.+...
T Consensus 112 R~nR~~v~~~~~-gk-rvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~ 189 (286)
T PF10672_consen 112 RENRKWVRKYAK-GK-RVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR 189 (286)
T ss_dssp HHHHHHHHHHCT-TC-EEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH
T ss_pred HhhHHHHHHHcC-CC-ceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH
Confidence 335666766543 44 999999999999999998886699999999999999999984 3 2478899999987431
Q ss_pred c-cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 109 F-QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 109 ~-~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. ..++||+|+++.+--.- +...-..+..+++..+.++|+|||.+++.+.+.
T Consensus 190 ~~~~~~fD~IIlDPPsF~k-~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 190 LKKGGRFDLIILDPPSFAK-SKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp HHHTT-EEEEEE--SSEES-STCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred HhcCCCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 1 35689999998663211 111123567789999999999999998777544
No 176
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.93 E-value=1.5e-08 Score=82.65 Aligned_cols=102 Identities=16% Similarity=0.245 Sum_probs=78.8
Q ss_pred cEEEEccCCch----hHHHHHHcC------CCeEEEEeCCHHHHHHHHHHc-------CC--------------C-----
Q 026558 50 RILIVGCGNSA----FSEGMVDDG------YEDVVNVDISSVVIEAMMKKY-------SN--------------R----- 93 (237)
Q Consensus 50 ~iLdlG~G~G~----~~~~~~~~~------~~~~~~vD~s~~~~~~a~~~~-------~~--------------~----- 93 (237)
+|+-.||+||. +++.+.+.+ ..+++|+|||..+++.|+.-. ++ .
T Consensus 99 rIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v 178 (268)
T COG1352 99 RIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRV 178 (268)
T ss_pred EEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEE
Confidence 89999999994 334444443 249999999999999988322 00 0
Q ss_pred -----CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 94 -----PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 94 -----~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..|.|.+.|+..-+ ...+.||+|+|.+++-++ +...+.++++..+..|+|||.|++-.
T Consensus 179 ~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYF-----d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 179 KEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYF-----DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred ChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEee-----CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 13667777776554 256789999999999998 77889999999999999999998854
No 177
>PRK00536 speE spermidine synthase; Provisional
Probab=98.92 E-value=2e-08 Score=81.65 Aligned_cols=101 Identities=15% Similarity=0.226 Sum_probs=77.8
Q ss_pred HhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEccccccccccCCCc
Q 026558 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 41 ~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
....++.+++||-+|.|.|..+++++++.. +++.+||++++++.+++.+. ..|+++++.. ......++|
T Consensus 66 pl~~h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~~f 140 (262)
T PRK00536 66 GGCTKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIKKY 140 (262)
T ss_pred HHhhCCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCCcC
Confidence 334455656999999999999999999964 99999999999999999663 2356666641 211124789
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|+|+.+... ...+.+.+.++|+|||+++.+.-
T Consensus 141 DVIIvDs~~------------~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 141 DLIICLQEP------------DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CEEEEcCCC------------ChHHHHHHHHhcCCCcEEEECCC
Confidence 999998542 15677889999999999998753
No 178
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.91 E-value=8.2e-09 Score=83.48 Aligned_cols=110 Identities=11% Similarity=0.104 Sum_probs=84.3
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccc-c
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMD-E 108 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~-~ 108 (237)
...++..++.. +.++|||||+++|..++++++.. .++++.+|++++..+.|++.+.. ..+++++.+|+.+.. .
T Consensus 67 ~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 67 EGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQ 146 (247)
T ss_pred HHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHH
Confidence 34444444332 22489999999999999998753 34999999999999999999852 358999999997642 2
Q ss_pred cc-----CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 109 FQ-----TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 109 ~~-----~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+. .++||+||.+.- ......+++.+.+.|+|||++++
T Consensus 147 l~~~~~~~~~fD~iFiDad----------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDAD----------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHhccccCCcccEEEecCC----------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 21 368999998743 35678889999999999999876
No 179
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=3.7e-08 Score=78.99 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=80.9
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEc----cccccccccCCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKM----DVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~----d~~~~~~~~~~~fD~I~~~~ 121 (237)
.|||+|||+|..+..++... .+.++++|.|+.++..|.+|... ...+.++.. |..+......+++|+++++.
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 79999999999999887764 56999999999999999999842 235555533 33332224578999999986
Q ss_pred ccc-------------------eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLD-------------------SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~-------------------~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.- .+-.+.++......++.-+.|.|+|||.+.+...
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 631 1112234556777888999999999999988765
No 180
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.90 E-value=7.7e-09 Score=85.98 Aligned_cols=85 Identities=18% Similarity=0.341 Sum_probs=66.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~ 113 (237)
..++.........+|||||||+|.++..+++.+. +++++|+++.+++.+++++.. .++++++.+|+.+.+ + ..
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-~--~~ 101 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-F--PY 101 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-c--cc
Confidence 3344433222334999999999999999998864 899999999999999998752 357999999998765 3 46
Q ss_pred ccEEEeccccce
Q 026558 114 FDSVVDKGTLDS 125 (237)
Q Consensus 114 fD~I~~~~~l~~ 125 (237)
||.|+++.+++.
T Consensus 102 ~d~VvaNlPY~I 113 (294)
T PTZ00338 102 FDVCVANVPYQI 113 (294)
T ss_pred cCEEEecCCccc
Confidence 899999877653
No 181
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.89 E-value=9.6e-09 Score=81.66 Aligned_cols=102 Identities=22% Similarity=0.282 Sum_probs=76.8
Q ss_pred CCcChHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc
Q 026558 32 KYPSLAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 32 ~~~~~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 110 (237)
+-..+..+++.+-.... ..|.|+|||.+.++. ...+ .|..+|+-+ .+-+++.+|+.+.| ++
T Consensus 164 P~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~-kV~SfDL~a-------------~~~~V~~cDm~~vP-l~ 225 (325)
T KOG3045|consen 164 PENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERH-KVHSFDLVA-------------VNERVIACDMRNVP-LE 225 (325)
T ss_pred CCChHHHHHHHHHhCcCceEEEecccchhhhhh---cccc-ceeeeeeec-------------CCCceeeccccCCc-Cc
Confidence 44445555555433232 489999999988765 2223 889999854 45678999999998 99
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+++.|+++....|.- .+...++.++.|+|++||.+.+....
T Consensus 226 d~svDvaV~CLSLMg--------tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 226 DESVDVAVFCLSLMG--------TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred cCcccEEEeeHhhhc--------ccHHHHHHHHHHHhccCceEEEEehh
Confidence 999999998655433 57899999999999999999997743
No 182
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.87 E-value=4.8e-09 Score=82.21 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=85.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc-C-C--CCCcEEEEcccccc-ccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY-S-N--RPQLKYIKMDVRQM-DEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~-~-~--~~~~~~~~~d~~~~-~~~~~~~fD~I~~~~~l 123 (237)
.+|||-+.|-|..++..+++|...|+.+|-+|..++.|.-|- + + ...++++.+|+.+. ..|.+++||+|+-+.+=
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPR 215 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPR 215 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCCCc
Confidence 499999999999999999999779999999999999988764 1 1 23689999999774 34789999999988653
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-.. .+.-...++-++++|+|+|||.++--+
T Consensus 216 fS~----AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 216 FSL----AGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred cch----hhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 222 234567889999999999999997655
No 183
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.86 E-value=2.4e-08 Score=81.30 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=85.6
Q ss_pred CcChHHHHHhhCCC----C-CCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC----------------
Q 026558 33 YPSLAPLIKLYVPS----H-HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---------------- 91 (237)
Q Consensus 33 ~~~~~~~l~~~~~~----~-~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---------------- 91 (237)
+..+...|....++ . +.+||-.|||.|+++..++..|+ .+.|.|.|--|+-..+-.+.
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 44455556666552 1 13899999999999999999998 99999999988655442110
Q ss_pred --------------------------CCCCcEEEEcccccccccc--CCCccEEEeccccceeccCCCChHHHHHHHHHH
Q 026558 92 --------------------------NRPQLKYIKMDVRQMDEFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV 143 (237)
Q Consensus 92 --------------------------~~~~~~~~~~d~~~~~~~~--~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~ 143 (237)
...++....+|+.+....+ .++||+|++...++.. .+..++|+.+
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA-------~Ni~~Yi~tI 188 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA-------ENIIEYIETI 188 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech-------HHHHHHHHHH
Confidence 0113555666666553112 3699999999988877 9999999999
Q ss_pred HHhcCCCcEEEEE
Q 026558 144 WRVLKDKGVYILV 156 (237)
Q Consensus 144 ~~~L~pgG~l~~~ 156 (237)
.++|||||+.+-.
T Consensus 189 ~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 189 EHLLKPGGYWINF 201 (270)
T ss_pred HHHhccCCEEEec
Confidence 9999999987753
No 184
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.86 E-value=1.4e-07 Score=76.73 Aligned_cols=129 Identities=14% Similarity=0.224 Sum_probs=95.6
Q ss_pred cEEEEccCCchhHHHHHHcC---CCeEEEEeCCHHHHHHHHHHcC--CCCCc-EEEEcccccccccc--CCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMVDDG---YEDVVNVDISSVVIEAMMKKYS--NRPQL-KYIKMDVRQMDEFQ--TGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~---~~~~~~vD~s~~~~~~a~~~~~--~~~~~-~~~~~d~~~~~~~~--~~~fD~I~~~~ 121 (237)
+||||.||.|.....+.+.. ..++...|+|+..++..++.++ +..++ +|.++|+.+...+. ....++++.++
T Consensus 138 rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsG 217 (311)
T PF12147_consen 138 RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSG 217 (311)
T ss_pred EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEec
Confidence 99999999999988877654 3589999999999999999885 34565 99999998754332 45689999999
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE--cCCchhhhhcc----cCCCCceEEEEEec
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT--YGAPIYRLGML----RDSCSWNIKLHVIE 182 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~--~~~~~~~~~~~----~~~~~w~~~~~~~~ 182 (237)
.++.+ ++.+.....+.-+.+++.|||+++... +++........ +....|....+.-.
T Consensus 218 L~ElF----~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~ 280 (311)
T PF12147_consen 218 LYELF----PDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQA 280 (311)
T ss_pred chhhC----CcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHH
Confidence 88877 333557778999999999999998765 34332222222 23357866655443
No 185
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.86 E-value=9e-09 Score=85.43 Aligned_cols=100 Identities=23% Similarity=0.251 Sum_probs=74.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
+.|||+|||+|.++.+.++.|..+++++|.|.-+ +.|++.+.. . .-++++++.+.+.. +|.+++|+|++-..=..
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cCccceeEEeehhhhHH
Confidence 3899999999999999999997799999987665 888877743 2 24789999998885 77899999999643222
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
++ -..-...+|-.--+.|+|||.++
T Consensus 140 Ll----~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 140 LL----YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HH----HhhhhhhhhhhhhhccCCCceEc
Confidence 10 01223344444567899999875
No 186
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.85 E-value=3.9e-08 Score=86.56 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=84.8
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||++||.|.-+..+++.. ...+++.|+++.-++.++++++ +..++.+...|...+.....+.||.|+.+.++.
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCS 194 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCS 194 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCC
Confidence 499999999999999998863 3489999999999999999985 445788888888876433346799999876643
Q ss_pred eec--cCC------CCh-------HHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLL--CGS------NSR-------QNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~--~~~------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
... ... .+. ..+.++|.++.+.|+|||+++.+|.+
T Consensus 195 G~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 195 GEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 220 000 011 23467999999999999999998865
No 187
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.85 E-value=1.1e-08 Score=83.10 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=83.6
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEccccccccccCC-Cc
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTG-SF 114 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~-~f 114 (237)
...+.+++||-||.|.|..+..+.+.. ..+++++|+++.+++.|++.+. ..++++++..|......-..+ +|
T Consensus 72 ~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 72 LLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp HHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred hcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcc
Confidence 334444599999999999999999876 4599999999999999998873 246899999999876533344 89
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+|+....- .. +.........+++.+.++|+|||++++..
T Consensus 152 DvIi~D~~d-p~--~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 152 DVIIVDLTD-PD--GPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEESSS-TT--SCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEeCCC-CC--CCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999987542 11 11111345789999999999999999876
No 188
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.84 E-value=9.6e-09 Score=80.44 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=73.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--C-CCCcEEEEccccccccccCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--N-RPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~-~~~~~~~~~d~~~~~~~~~~ 112 (237)
+..+...+.++. .|+|+.||-|.+++.+++.+ ...|+++|++|.+++.+++++. . ...+...++|+.++. +..
T Consensus 92 r~Ri~~~v~~~e-~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~~~ 168 (200)
T PF02475_consen 92 RRRIANLVKPGE-VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--PEG 168 (200)
T ss_dssp HHHHHTC--TT--EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT
T ss_pred HHHHHhcCCcce-EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--Ccc
Confidence 444555555555 99999999999999999843 3489999999999999999984 2 236789999999986 378
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
.+|.|+++.+-. ...+|..+.+++++||++-
T Consensus 169 ~~drvim~lp~~-----------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 169 KFDRVIMNLPES-----------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -EEEEEE--TSS-----------GGGGHHHHHHHEEEEEEEE
T ss_pred ccCEEEECChHH-----------HHHHHHHHHHHhcCCcEEE
Confidence 899999975532 2457888999999998864
No 189
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.83 E-value=5.3e-09 Score=84.63 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=91.4
Q ss_pred CCCCChhhhHHHhccCCCCceeec-CCcChHHHHHhhCCCCC--CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 026558 8 QAYGEPWYWDNRYAHESGPFDWYQ-KYPSLAPLIKLYVPSHH--QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE 84 (237)
Q Consensus 8 ~~~~~~~~w~~~y~~~~~~~~~~~-~~~~~~~~l~~~~~~~~--~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~ 84 (237)
++|++++|.+.+|....+...-.+ ....+..+.+.+...+. .++||||||+-.....-+.....+++..|+++..++
T Consensus 14 ~~FdP~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~ 93 (256)
T PF01234_consen 14 EEFDPRAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNRE 93 (256)
T ss_dssp HHB-HHHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHH
T ss_pred hcCCHHHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHH
Confidence 467888899999976543321000 00011222222222111 389999999966544444444559999999999998
Q ss_pred HHHHHcCCCC------------------------------Cc-EEEEccccccccccC-----CCccEEEeccccceecc
Q 026558 85 AMMKKYSNRP------------------------------QL-KYIKMDVRQMDEFQT-----GSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 85 ~a~~~~~~~~------------------------------~~-~~~~~d~~~~~~~~~-----~~fD~I~~~~~l~~~~~ 128 (237)
..++.+++.. .+ +++.+|+.+.+.+.. .+||+|++..+++..-
T Consensus 94 el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~- 172 (256)
T PF01234_consen 94 ELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC- 172 (256)
T ss_dssp HHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH--
T ss_pred HHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc-
Confidence 7776553210 13 377888877554432 3599999999987662
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+.+.....++++.++|||||.|++...
T Consensus 173 --~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 173 --KDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp --SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 2457788999999999999999999764
No 190
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.83 E-value=5.1e-08 Score=77.95 Aligned_cols=102 Identities=16% Similarity=0.261 Sum_probs=65.9
Q ss_pred hHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHH-HHHHcCCCCCc-EEEEccccccc--cc-
Q 026558 36 LAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA-MMKKYSNRPQL-KYIKMDVRQMD--EF- 109 (237)
Q Consensus 36 ~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~-a~~~~~~~~~~-~~~~~d~~~~~--~~- 109 (237)
+..++..... ....+|||+|||+|.++..+++.+..+++++|+++.++.. ++++ +++ .+...|+.... .+
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~----~~v~~~~~~ni~~~~~~~~~ 138 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD----ERVKVLERTNIRYVTPADIF 138 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC----CCeeEeecCCcccCCHhHcC
Confidence 4555555432 2333899999999999999999986699999999988776 3332 232 23334444221 11
Q ss_pred -cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 110 -QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 110 -~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.-..+|++|.+. ..++..+.++|+| |.+++..
T Consensus 139 ~d~~~~DvsfiS~---------------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 139 PDFATFDVSFISL---------------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CCceeeeEEEeeh---------------HhHHHHHHHHhCc-CeEEEEc
Confidence 112456555432 3368899999999 8776655
No 191
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.9e-09 Score=76.18 Aligned_cols=77 Identities=19% Similarity=0.373 Sum_probs=65.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
++++|||||+|-+++..+-.+...+.|+||+|++++.+..|.... -+++++++|+.++. +..+.||.++.+.++..-
T Consensus 50 kkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle-~~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE-LKGGIFDTAVINPPFGTK 127 (185)
T ss_pred cchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-ccCCeEeeEEecCCCCcc
Confidence 489999999999997777666679999999999999999998542 37789999999887 667899999999887653
No 192
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.80 E-value=2.6e-08 Score=87.31 Aligned_cols=99 Identities=22% Similarity=0.313 Sum_probs=71.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHc--C-CCCCcEEEEccccccccccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKY--S-NRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-----~~~~~~vD~s~~~~~~a~~~~--~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
..|+|+|||+|.+....++.+ ..+|+++|-++.++..++++. . -...++++.+|++++. ...++|+|+|-
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~--lpekvDIIVSE 265 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE--LPEKVDIIVSE 265 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC--HSS-EEEEEE-
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC--CCCceeEEEEe
Confidence 379999999999998877664 349999999999888776653 2 2358999999999986 35699999996
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
.++.+ . ..+...++|....|.|+|||+++
T Consensus 266 -lLGsf-g---~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 -LLGSF-G---DNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTT-B---TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -ccCCc-c---ccccCHHHHHHHHhhcCCCCEEe
Confidence 33332 1 11345667899999999999875
No 193
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.2e-07 Score=76.75 Aligned_cols=88 Identities=18% Similarity=0.267 Sum_probs=71.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCC-Cc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG-SF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~-~f 114 (237)
+..++...-..++..|||||+|.|.+|..+++.+. .++++|+++.++...++......+++++.+|+.... ++.- .+
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d-~~~l~~~ 96 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD-FPSLAQP 96 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc-chhhcCC
Confidence 45555554333334999999999999999999986 899999999999999999876679999999999887 5432 78
Q ss_pred cEEEeccccce
Q 026558 115 DSVVDKGTLDS 125 (237)
Q Consensus 115 D~I~~~~~l~~ 125 (237)
+.|+++.+.+-
T Consensus 97 ~~vVaNlPY~I 107 (259)
T COG0030 97 YKVVANLPYNI 107 (259)
T ss_pred CEEEEcCCCcc
Confidence 99999877643
No 194
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.77 E-value=9.1e-08 Score=82.09 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=70.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-cc--------------C
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQ--------------T 111 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~--------------~ 111 (237)
.+|||++||+|.++..+++.. .+++++|+++.+++.|++++. +..+++++.+|+.+... +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 379999999999999888775 499999999999999999984 33488999999976421 11 1
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+||+|+.+.+-.- ....+++.+.+ |++++++...
T Consensus 287 ~~~D~v~lDPPR~G---------~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 287 YNFSTIFVDPPRAG---------LDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred CCCCEEEECCCCCC---------CcHHHHHHHHc---cCCEEEEEeC
Confidence 25899999866321 12344444443 5677766654
No 195
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.75 E-value=9.3e-08 Score=81.73 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=69.8
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccc----------c-----CC
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF----------Q-----TG 112 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~----------~-----~~ 112 (237)
+|||+|||+|.++..+++.. .+++|+|+++.+++.|++++. +..+++++.+|+.++..- . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 79999999999999888876 499999999999999999984 334789999999774310 0 12
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.||+|+.+.+=.- ....+++.+.+ |++++++...
T Consensus 279 ~~d~v~lDPPR~G---------~~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 279 NCSTIFVDPPRAG---------LDPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred CCCEEEECCCCCC---------CcHHHHHHHHc---CCcEEEEEcC
Confidence 3899998765211 12344444433 6777776653
No 196
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.75 E-value=1.2e-07 Score=76.51 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=75.7
Q ss_pred CCCCCcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccccccc---CCCccE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQ---TGSFDS 116 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~---~~~fD~ 116 (237)
.++. +|||-|+|+|.++..+++. + ..+++..|+.++..+.|+++++ +. .++.+.+.|+.+.. +. +..+|.
T Consensus 39 ~pG~-~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g-~~~~~~~~~Da 116 (247)
T PF08704_consen 39 RPGS-RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG-FDEELESDFDA 116 (247)
T ss_dssp -TT--EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG---STT-TTSEEE
T ss_pred CCCC-EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc-ccccccCcccE
Confidence 4454 9999999999999999875 2 3499999999999999999985 23 47899999997533 32 367999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhc-CCCcEEEEEEc
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVTY 158 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~~ 158 (237)
|+.+. .++...+..+.++| ++||++.+...
T Consensus 117 vfLDl------------p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 117 VFLDL------------PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp EEEES------------SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred EEEeC------------CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 98864 34466889999999 89999888763
No 197
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.74 E-value=7.5e-09 Score=83.56 Aligned_cols=113 Identities=19% Similarity=0.339 Sum_probs=88.8
Q ss_pred CCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC
Q 026558 32 KYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 111 (237)
+++....++..... +. .++|+|||.|..+.. ...+.++|+|++...+.-+++.- ......+|+.++| +..
T Consensus 32 ~Wp~v~qfl~~~~~-gs-v~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~----~~~~~~ad~l~~p-~~~ 101 (293)
T KOG1331|consen 32 PWPMVRQFLDSQPT-GS-VGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSG----GDNVCRADALKLP-FRE 101 (293)
T ss_pred ccHHHHHHHhccCC-cc-eeeecccCCcccCcC---CCcceeeecchhhhhccccccCC----CceeehhhhhcCC-CCC
Confidence 44556666665433 44 899999999976532 12347999999998888777652 2268889999999 889
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+||.+++..++||+ .+......+++++.|+|+|||..++..+
T Consensus 102 ~s~d~~lsiavihhl----sT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHL----STRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred Cccccchhhhhhhhh----hhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 999999999999999 5667888999999999999998777554
No 198
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.72 E-value=2e-07 Score=71.61 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=79.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccC--CCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQT--GSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~--~~fD~I~~~~~l 123 (237)
.++||+-+|+|.++.+.+++|...++.+|.+..++..+++|.+. ..+++++..|+.....-.. +.||+|+.+.++
T Consensus 45 ~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy 124 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPY 124 (187)
T ss_pred CEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCC
Confidence 49999999999999999999988999999999999999999853 2578888888885421122 249999999887
Q ss_pred ceeccCCCChHHHHHHHHH--HHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKE--VWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~--~~~~L~pgG~l~~~~~ 158 (237)
+.- .-+....+.. -...|+|+|.+++...
T Consensus 125 ~~~------l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 125 AKG------LLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred ccc------hhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 621 1222233333 4577999999988764
No 199
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.71 E-value=1.1e-07 Score=81.97 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=76.6
Q ss_pred CcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||++||+|..++.++.. +..+|+++|+++.+++.++++++ +..++.+.+.|+..+. ...+.||+|+.+.. .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l-~~~~~fD~V~lDP~-G- 135 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL-HEERKFDVVDIDPF-G- 135 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH-hhcCCCCEEEECCC-C-
Confidence 38999999999999998765 33489999999999999999984 3346778999997753 11467999998743 2
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+++.+.+.+++||++++..
T Consensus 136 ---------s~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 136 ---------SPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---------CcHHHHHHHHHHhcCCCEEEEEe
Confidence 22567888888899999998863
No 200
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.69 E-value=1e-07 Score=85.13 Aligned_cols=113 Identities=13% Similarity=0.074 Sum_probs=82.5
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-cccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l~ 124 (237)
..+||||||.|.++..+++... ..++|+|++...+..+.++.. +..|+.+++.|+..+. .++++++|.|+.+++==
T Consensus 349 p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDP 428 (506)
T PRK01544 349 KVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDP 428 (506)
T ss_pred ceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCC
Confidence 4899999999999999998863 489999999998888877753 4568888888875433 26778899998864311
Q ss_pred eeccCC-CChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 125 SLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 125 ~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
|.=-.+ .-+-....+++.+.++|+|||.+.+.|-...
T Consensus 429 WpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 429 WIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred CCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 100000 0111345689999999999999999885443
No 201
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.2e-08 Score=74.84 Aligned_cols=107 Identities=17% Similarity=0.210 Sum_probs=81.1
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHcCC------------CCCcEEEE
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-G--YEDVVNVDISSVVIEAMMKKYSN------------RPQLKYIK 100 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~--~~~~~~vD~s~~~~~~a~~~~~~------------~~~~~~~~ 100 (237)
+.+.|...+.++- +.||+|+|+|.++..++.. + .....|||.-++.++.+++++.. .+++.++.
T Consensus 72 ~le~L~~~L~pG~-s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 72 ALEYLDDHLQPGA-SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHhhccCc-ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 4455555566665 9999999999999888753 2 22459999999999999998831 23678889
Q ss_pred ccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 101 MDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 101 ~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|..... -+..+||.|.+... ...+.+++...|++||.+++-.
T Consensus 151 GDgr~g~-~e~a~YDaIhvGAa-------------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 151 GDGRKGY-AEQAPYDAIHVGAA-------------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCccccC-CccCCcceEEEccC-------------ccccHHHHHHhhccCCeEEEee
Confidence 9998875 45688999988633 2345667888899999998865
No 202
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.67 E-value=2.8e-07 Score=77.45 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=89.7
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~ 113 (237)
+..+......+. +|||+-+|-|.+++.++..+...|+++|++|.+++.+++++.- . ..+..+++|+.+.. ...+.
T Consensus 179 R~Rva~~v~~GE-~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~-~~~~~ 256 (341)
T COG2520 179 RARVAELVKEGE-TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA-PELGV 256 (341)
T ss_pred HHHHHhhhcCCC-EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh-hcccc
Confidence 444555556555 9999999999999999999865699999999999999999852 2 24889999999987 33388
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+|.|++..+ .....++..+.+.+++||++......+
T Consensus 257 aDrIim~~p-----------~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 257 ADRIIMGLP-----------KSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred CCEEEeCCC-----------CcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 999998754 344668888999999999998876544
No 203
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.67 E-value=4.5e-07 Score=76.06 Aligned_cols=110 Identities=13% Similarity=0.170 Sum_probs=80.4
Q ss_pred hhCCCCCCcEEEEccCCchhHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHcC--CCCCcEE--EEcccccccc-c--
Q 026558 42 LYVPSHHQRILIVGCGNSAFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKYS--NRPQLKY--IKMDVRQMDE-F-- 109 (237)
Q Consensus 42 ~~~~~~~~~iLdlG~G~G~~~~~~~~~~-----~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~--~~~d~~~~~~-~-- 109 (237)
..++++. .|+|+|||+|.-+..+++.. ...++++|+|..+++.+.+++. ..+.+.+ +++|..+... +
T Consensus 72 ~~i~~~~-~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 72 ASIPSGS-MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred HhcCCCC-EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccc
Confidence 3445554 89999999998877665432 3489999999999999999987 3466665 7888866421 1
Q ss_pred --cCCCccEEEec-cccceeccCCCChHHHHHHHHHHHH-hcCCCcEEEEEE
Q 026558 110 --QTGSFDSVVDK-GTLDSLLCGSNSRQNATQMLKEVWR-VLKDKGVYILVT 157 (237)
Q Consensus 110 --~~~~fD~I~~~-~~l~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~~~ 157 (237)
......+|+.- .++..+ ++.....+|+++.+ .|+|||.+++-.
T Consensus 151 ~~~~~~~r~~~flGSsiGNf-----~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNF-----SRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccccCCccEEEEeCccccCC-----CHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 12334555554 467666 77888999999999 999999988743
No 204
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.65 E-value=2.1e-07 Score=74.72 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=67.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC---CcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP---QLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~~~ 113 (237)
..++..........|||+|.|||.++..+.+.+. +|+++|+++.|+....++.++.+ ..+++.+|+...+ ...
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d---~P~ 123 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD---LPR 123 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---Ccc
Confidence 3333333333334999999999999999999986 99999999999999999997644 6889999998775 357
Q ss_pred ccEEEeccccc
Q 026558 114 FDSVVDKGTLD 124 (237)
Q Consensus 114 fD~I~~~~~l~ 124 (237)
||.++++.+.+
T Consensus 124 fd~cVsNlPyq 134 (315)
T KOG0820|consen 124 FDGCVSNLPYQ 134 (315)
T ss_pred cceeeccCCcc
Confidence 99999986654
No 205
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.64 E-value=9.3e-08 Score=80.15 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=56.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCC----CcEEEE-cccccccc---ccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRP----QLKYIK-MDVRQMDE---FQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~----~~~~~~-~d~~~~~~---~~~~~fD~I~~ 119 (237)
.+|||||||+|.+...++... ..+++|+|+++.+++.|++++...+ ++.+.. .|..++.. .+.+.||+|+|
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivc 195 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLC 195 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEe
Confidence 499999999997776665542 3499999999999999999986432 455543 34333221 23568999999
Q ss_pred cccccee
Q 026558 120 KGTLDSL 126 (237)
Q Consensus 120 ~~~l~~~ 126 (237)
+.+++.-
T Consensus 196 NPPf~~s 202 (321)
T PRK11727 196 NPPFHAS 202 (321)
T ss_pred CCCCcCc
Confidence 9987643
No 206
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.64 E-value=2.8e-07 Score=76.03 Aligned_cols=99 Identities=16% Similarity=0.250 Sum_probs=74.5
Q ss_pred CCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
++.|||+|||+|.++.+.++.|..++++++-| +|.+.|++..++. .++.++.+-+.+.. + .++.|+|++- ++.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-L-PEk~DviISE-PMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE-L-PEKVDVIISE-PMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc-C-chhccEEEec-cch
Confidence 34899999999999999999997799999974 6889999887642 46788888888875 3 5789999986 444
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
++... +...+..-.+.+.|+|+|.++
T Consensus 254 ~mL~N----ERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 254 YMLVN----ERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhhh----HHHHHHHHHHHhhcCCCCccc
Confidence 44111 233333345669999999875
No 207
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.64 E-value=1.7e-07 Score=80.42 Aligned_cols=96 Identities=9% Similarity=0.178 Sum_probs=78.3
Q ss_pred cEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
+|||+.||+|..++.++.. +..+|+++|+++.+++.+++|++. ..++.+.+.|+..+......+||+|+.+. +.
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG- 124 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG- 124 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC-
Confidence 7999999999999999987 456999999999999999999852 23678999999876422246799998875 32
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
....+++.+.+.+++||.+.+.
T Consensus 125 ---------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 ---------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ---------CcHHHHHHHHHhcccCCEEEEE
Confidence 2246899999999999999886
No 208
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.62 E-value=2.2e-08 Score=86.81 Aligned_cols=98 Identities=21% Similarity=0.302 Sum_probs=71.2
Q ss_pred CcEEEEccCCchhHHHHHHcCCC--eEEEEeCCHHHHHHHHHHcCCCCCcEEEEc--cccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYE--DVVNVDISSVVIEAMMKKYSNRPQLKYIKM--DVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~--~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~--d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
..+||+|||+|+++.++.+++.. ++..-|..+.+++.|.++- +-.+.+ -...+| |+++.||+|.|..++.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG-----vpa~~~~~~s~rLP-fp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG-----VPAMIGVLGSQRLP-FPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC-----cchhhhhhcccccc-CCccchhhhhcccccc
Confidence 38999999999999999999742 2222255667777777773 222222 235677 9999999999998876
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. . ..-.-+|-++.|+|+|||++++...
T Consensus 193 ~W-----~-~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 193 PW-----H-PNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cc-----h-hcccceeehhhhhhccCceEEecCC
Confidence 54 1 2224588999999999999988653
No 209
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.61 E-value=1.1e-07 Score=73.64 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=66.1
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc------c-cc--CCCccEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD------E-FQ--TGSFDSV 117 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~------~-~~--~~~fD~I 117 (237)
.++||+||++|.++..+++++ ...++|+|+.+. ...+++.++++|+.+.. . +. .+.+|+|
T Consensus 25 ~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 25 FTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp EEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred cEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhccccccCccee
Confidence 499999999999999999997 459999999876 11135566666664421 1 12 2689999
Q ss_pred EeccccceeccC-C---CChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 118 VDKGTLDSLLCG-S---NSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 118 ~~~~~l~~~~~~-~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
+++......... . .+.......+.-+...|+|||.+++-.+..+.
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp EE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred ccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 999843322000 0 11133444566667789999999988876544
No 210
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.60 E-value=1.8e-07 Score=78.69 Aligned_cols=124 Identities=13% Similarity=0.231 Sum_probs=80.6
Q ss_pred cChHHHHHhhCCCCCC-cEEEEccCCchhHHHHHHc--------CCCeEEEEeCCHHHHHHHHHHc--CC--CCCcEEEE
Q 026558 34 PSLAPLIKLYVPSHHQ-RILIVGCGNSAFSEGMVDD--------GYEDVVNVDISSVVIEAMMKKY--SN--RPQLKYIK 100 (237)
Q Consensus 34 ~~~~~~l~~~~~~~~~-~iLdlG~G~G~~~~~~~~~--------~~~~~~~vD~s~~~~~~a~~~~--~~--~~~~~~~~ 100 (237)
..+.+++...+..... +|+|.+||+|.++..+.+. ....++|+|+++.++..|+.++ .+ ..+..+..
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 3455666665554443 7999999999999888762 3459999999999999998775 22 12346888
Q ss_pred cccccccccc-CCCccEEEeccccceeccCC--------------CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 101 MDVRQMDEFQ-TGSFDSVVDKGTLDSLLCGS--------------NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 101 ~d~~~~~~~~-~~~fD~I~~~~~l~~~~~~~--------------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|....+... ...||+|+++.++...-... ........++..+.+.|++||++.++.
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 8886655333 57899999998876540000 111222358899999999999987765
No 211
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.3e-06 Score=74.71 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=87.8
Q ss_pred HHHhhCCCCC-CcEEEEccCCchhHHHHHHcCC---CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccc-cC
Q 026558 39 LIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF-QT 111 (237)
Q Consensus 39 ~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~---~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~-~~ 111 (237)
+....+.+.+ .+|||++++.|.-|..+++... ..|+++|+++.-++..+++++ +..++.....|....+.. ..
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccc
Confidence 3333443333 4999999999999999988752 256999999999999999985 345677888888765422 22
Q ss_pred -CCccEEEeccccceeccC---C-----CC-------hHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 112 -GSFDSVVDKGTLDSLLCG---S-----NS-------RQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 112 -~~fD~I~~~~~l~~~~~~---~-----~~-------~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++||.|+.+.++.....- + .. ...+.++|..+.+.|||||+++.+|.+-
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 359999998765432100 0 11 1246679999999999999999998644
No 212
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.52 E-value=1.5e-06 Score=67.60 Aligned_cols=109 Identities=14% Similarity=0.185 Sum_probs=86.1
Q ss_pred HhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEcccccc-ccccCCCccEEE
Q 026558 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQM-DEFQTGSFDSVV 118 (237)
Q Consensus 41 ~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~-~~~~~~~fD~I~ 118 (237)
.....++ ++||++|-|-|.....+.++...+-+.|+..|.+++..++..- ...|+-++.+-..+. +.++++.||-|+
T Consensus 96 ~ai~tkg-grvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 96 EAISTKG-GRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred HHHhhCC-ceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence 3333444 4999999999999999998876688999999999999998863 335777777766553 236788899998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-.-.-.+. ++...+.+.+.++|||+|++-+.-
T Consensus 175 yDTy~e~y-------Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 175 YDTYSELY-------EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eechhhHH-------HHHHHHHHHHhhhcCCCceEEEec
Confidence 87544555 899999999999999999886643
No 213
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.51 E-value=8.9e-07 Score=73.82 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=84.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
...+|+|.|.|..+..+.... .++-+++++...+-.++..+. +.++.+-+|...-. | +-|+|+...++|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~~--P--~~daI~mkWiLhdw-- 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQDT--P--KGDAIWMKWILHDW-- 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc--CCcceecccccccC--C--CcCeEEEEeecccC--
Confidence 389999999999999999954 489999999888888887774 45788888886542 2 34699999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+.++..++|+++...|+|||.+++....-|
T Consensus 250 ---tDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 250 ---TDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred ---ChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 889999999999999999999999876333
No 214
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.49 E-value=3.2e-06 Score=78.60 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=76.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-------------------------------------------CCeEEEEeCCHHHHHH
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-------------------------------------------YEDVVNVDISSVVIEA 85 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-------------------------------------------~~~~~~vD~s~~~~~~ 85 (237)
..++|.+||+|.+.++.+... ...++|+|+++.+++.
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA 271 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence 489999999999999876520 1268999999999999
Q ss_pred HHHHcCC--C-CCcEEEEcccccccc-ccCCCccEEEeccccceeccCCCChHHHHHH---HHHHHHhcCCCcEEEEEEc
Q 026558 86 MMKKYSN--R-PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQM---LKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 86 a~~~~~~--~-~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~---l~~~~~~L~pgG~l~~~~~ 158 (237)
|++|+.. . ..+.+.++|+.+++. ...++||+|+++.++..-... ..+...+ +.+..+...+|+.+++.+.
T Consensus 272 A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~---~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 272 ARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGE---EPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCc---hHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 9999853 2 357899999988752 223579999999887543211 1233333 3334444458999888875
Q ss_pred CC
Q 026558 159 GA 160 (237)
Q Consensus 159 ~~ 160 (237)
..
T Consensus 349 ~~ 350 (702)
T PRK11783 349 SP 350 (702)
T ss_pred CH
Confidence 43
No 215
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.49 E-value=2.3e-07 Score=70.04 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=62.3
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccccc-ccCCC-ccEEEeccccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDE-FQTGS-FDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~-~~~~~-fD~I~~~~~l~ 124 (237)
.|+|+.||.|..++.+++.+. +|+++|+++..++.|+.+++- ..++.++++|+.+... +.... +|+|+.+.+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 699999999999999999975 999999999999999999852 3489999999988642 22222 89999986643
Q ss_pred ee-------ccC--CCChHHHHHHHHHHHHhc
Q 026558 125 SL-------LCG--SNSRQNATQMLKEVWRVL 147 (237)
Q Consensus 125 ~~-------~~~--~~~~~~~~~~l~~~~~~L 147 (237)
-. +.. .-.+-...++++.+.++.
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred CccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 11 100 112235566676666554
No 216
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.47 E-value=2.5e-06 Score=72.33 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=81.3
Q ss_pred CcEEEEccCCchhHHHHHHcCC---------------------------------C-------eEEEEeCCHHHHHHHHH
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY---------------------------------E-------DVVNVDISSVVIEAMMK 88 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~---------------------------------~-------~~~~vD~s~~~~~~a~~ 88 (237)
..++|.-||+|.++++.+-.+. + .++|+|+++.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 4899999999999998876541 0 27799999999999999
Q ss_pred HcCCC---CCcEEEEccccccccccCCCccEEEeccccceeccCCCChH-HHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 89 KYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ-NATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 89 ~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|.... .-+.|.+.|+..+. -+-+.+|+|+|+.+..--+....... ....+.+.+.+.++--+.+++.+.
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~-~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLK-EPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCC-CCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 98532 36899999999987 22278999999988754332222222 445666677788887778877763
No 217
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.4e-06 Score=76.12 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=74.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccc--cCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF--QTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~--~~~~fD~I~~~~~l~ 124 (237)
.++||+-||.|.++..++++.. +|+|+|+++++++.|+++++ +..|+.|..+++.+...- ....+|.|+.+.+=
T Consensus 295 ~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR- 372 (432)
T COG2265 295 ERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR- 372 (432)
T ss_pred CEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCC-
Confidence 4899999999999999997754 99999999999999999985 345799999999887522 23578999987542
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.-...-+-+....++|..+++++..
T Consensus 373 ---------~G~~~~~lk~l~~~~p~~IvYVSCN 397 (432)
T COG2265 373 ---------AGADREVLKQLAKLKPKRIVYVSCN 397 (432)
T ss_pred ---------CCCCHHHHHHHHhcCCCcEEEEeCC
Confidence 2223223333445667777777664
No 218
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.44 E-value=2.7e-06 Score=69.84 Aligned_cols=85 Identities=18% Similarity=0.307 Sum_probs=66.9
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC---CC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT---GS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~---~~ 113 (237)
.+++...-......|||+|+|+|.++..+++.+ .+++++|+++..++..++++...++++++.+|+.++. ... ..
T Consensus 20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~-~~~~~~~~ 97 (262)
T PF00398_consen 20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD-LYDLLKNQ 97 (262)
T ss_dssp HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC-GGGHCSSS
T ss_pred HHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc-cHHhhcCC
Confidence 444444433333499999999999999999998 5999999999999999999886689999999999876 322 45
Q ss_pred ccEEEecccc
Q 026558 114 FDSVVDKGTL 123 (237)
Q Consensus 114 fD~I~~~~~l 123 (237)
...|+++.+.
T Consensus 98 ~~~vv~NlPy 107 (262)
T PF00398_consen 98 PLLVVGNLPY 107 (262)
T ss_dssp EEEEEEEETG
T ss_pred ceEEEEEecc
Confidence 6677777655
No 219
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2.1e-06 Score=66.98 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=73.1
Q ss_pred CcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-------ccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-------FQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-------~~~~~fD~I~~ 119 (237)
.+|+|||+-.|+++..+++... ..|+++|+.| ....+++.++++|++.-.. +....+|+|+|
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s 117 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS 117 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------cccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEe
Confidence 3999999999999999988753 2599999977 3333679999999976431 34455799999
Q ss_pred cccc--------ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 120 KGTL--------DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 120 ~~~l--------~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
++.- +|. .........++-+..+|+|||.+++-.+...
T Consensus 118 D~ap~~~g~~~~Dh~----r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 118 DMAPNTSGNRSVDHA----RSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred cCCCCcCCCccccHH----HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 8664 222 1222334567777889999999999776443
No 220
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.40 E-value=2e-06 Score=77.56 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=54.5
Q ss_pred cEEEEccCCchhHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHcCCCC--CcEEEEccccccc----cccCCCc
Q 026558 50 RILIVGCGNSAFSEGMVDDG---------YEDVVNVDISSVVIEAMMKKYSNRP--QLKYIKMDVRQMD----EFQTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~---------~~~~~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~----~~~~~~f 114 (237)
+|||.|||+|.++..+++.. ...++|+|+++.++..++.++.... ...+...|..... .-..+.|
T Consensus 34 ~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~f 113 (524)
T TIGR02987 34 KIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLDLF 113 (524)
T ss_pred EEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccCcc
Confidence 89999999999999887642 1378999999999999998874322 3445545433211 0113579
Q ss_pred cEEEeccccce
Q 026558 115 DSVVDKGTLDS 125 (237)
Q Consensus 115 D~I~~~~~l~~ 125 (237)
|+|+.+.+..-
T Consensus 114 D~IIgNPPy~~ 124 (524)
T TIGR02987 114 DIVITNPPYGR 124 (524)
T ss_pred cEEEeCCCccc
Confidence 99999988654
No 221
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.39 E-value=7.3e-07 Score=75.97 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=89.1
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEe
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.+.+.. .++|+|||-|....++.....+.++|+|+++..+..+...... .....++.+|+.+.+ +++..||.+-+
T Consensus 107 ~~~~~~-~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd~v~~ 184 (364)
T KOG1269|consen 107 SCFPGS-KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFDGVRF 184 (364)
T ss_pred cCcccc-cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccCcEEE
Confidence 334444 8999999999999999988777999999999888887766532 124456888999998 99999999999
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....|. .+...++++++|+++|||+++...
T Consensus 185 ld~~~~~-------~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 185 LEVVCHA-------PDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred EeecccC-------CcHHHHHHHHhcccCCCceEEeHH
Confidence 9888888 889999999999999999998854
No 222
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.38 E-value=1.7e-06 Score=73.94 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=56.2
Q ss_pred HHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc---------
Q 026558 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE--------- 108 (237)
Q Consensus 40 l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~--------- 108 (237)
+...+...+..|||+-||.|.++..+++... +|+|+|+++.+++.|++++. +..|++|+.+++.++..
T Consensus 189 ~~~~l~~~~~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~ 267 (352)
T PF05958_consen 189 ALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFN 267 (352)
T ss_dssp HHHHCTT-TTEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGT
T ss_pred HHHHhhcCCCcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHH
Confidence 3334444333899999999999999999875 99999999999999999984 45689999887754321
Q ss_pred ------ccCCCccEEEecccc
Q 026558 109 ------FQTGSFDSVVDKGTL 123 (237)
Q Consensus 109 ------~~~~~fD~I~~~~~l 123 (237)
.....+|+|+.+.+=
T Consensus 268 ~~~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 268 RLKGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp TGGGS-GGCTTESEEEE---T
T ss_pred hhhhhhhhhcCCCEEEEcCCC
Confidence 112368999887553
No 223
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.36 E-value=6.1e-06 Score=65.02 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=83.4
Q ss_pred EEEEccCCchhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 51 ILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 51 iLdlG~G~G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
|.|+||.-|.+++++++.+.+ +++++|+++..++.|+++... ...+++..+|-.+.. -+.+..|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l-~~~e~~d~ivIAGM---- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL-KPGEDVDTIVIAGM---- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc-CCCCCCCEEEEecC----
Confidence 689999999999999999844 899999999999999999852 247899999976643 12334788877654
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceEEEEEe
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 181 (237)
+-....++|++....++....|+++.......-..++ ...+|.+....+
T Consensus 76 -----GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L-~~~gf~I~~E~l 124 (205)
T PF04816_consen 76 -----GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWL-YENGFEIIDEDL 124 (205)
T ss_dssp ------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHH-HHTTEEEEEEEE
T ss_pred -----CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHH-HHCCCEEEEeEE
Confidence 4466788999998888877788888766655444444 245676655544
No 224
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.36 E-value=6.5e-06 Score=60.97 Aligned_cols=100 Identities=26% Similarity=0.390 Sum_probs=71.6
Q ss_pred EEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCCCCC--cEEEEccccc--cccccC-CCccEEEecccc
Q 026558 51 ILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQ--LKYIKMDVRQ--MDEFQT-GSFDSVVDKGTL 123 (237)
Q Consensus 51 iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~--~~~~~~-~~fD~I~~~~~l 123 (237)
++|+|||+|... .+..... ..++++|+++.++..++........ +.+...|... .+ +.. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP-FEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC-CCCCCceeEEeeeeeh
Confidence 999999999976 3333322 3789999999999986655432111 5788888776 44 555 489999444444
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++. . ....+.++.+.++|+|.+++.....
T Consensus 130 ~~~-------~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLL-------P-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcC-------C-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 443 2 7889999999999999998877544
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.36 E-value=2.5e-06 Score=67.20 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=67.8
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcC-----------CCCCcEEEEccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS-----------NRPQLKYIKMDV 103 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~-----------~~~~~~~~~~d~ 103 (237)
+..+++..-..+....+|||||.|.....++-. +..+.+|||+.+...+.|+.... ....+.+..+|+
T Consensus 31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 566666544333349999999999998776644 44469999999998887765331 123677888888
Q ss_pred ccccc--ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 104 RQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 104 ~~~~~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.+.+. ..-...|+|++++.+-. +.....|.+....||+|.+++..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F~--------~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCFD--------PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT---------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cccHhHhhhhcCCCEEEEeccccC--------HHHHHHHHHHHhcCCCCCEEEEC
Confidence 76541 11245799999876421 45566678888899999887653
No 226
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.36 E-value=5.2e-06 Score=68.56 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=73.0
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEE---EEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKY---IKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~---~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+-.+.+.. ..+++++|.|+.+++.++.-....++... ......+.. +-...|+|+++++|
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL--PFPPDDLVIASYVL 112 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc--cCCCCcEEEEehhh
Confidence 499999999998776665542 34899999999999999987754332211 111111111 12234999999999
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
.-+ .+ .....+++.+.+.+.+ .++++..+.|.
T Consensus 113 ~EL----~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 113 NEL----PS-AARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hcC----Cc-hHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 888 34 7778889999888876 88887766553
No 227
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.31 E-value=3.4e-06 Score=65.34 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=74.4
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+++|+|+|.|-=++.++-.. ..+++.+|.+..-+...+.-.. +..|+++++..+.+ . ....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~-~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P-EYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T-TTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c-ccCCCccEEEeehh----
Confidence 79999999997666665443 2389999999888777776653 44689999999988 2 45789999999865
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
.....+++-+...+++||.+++.-....
T Consensus 125 -------~~l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 125 -------APLDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp -------SSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred -------cCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 3456788889999999999988875443
No 228
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.31 E-value=6.7e-06 Score=64.66 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=81.0
Q ss_pred eecCCcChHHHHHhhC-----CCCCCcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc
Q 026558 29 WYQKYPSLAPLIKLYV-----PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM 101 (237)
Q Consensus 29 ~~~~~~~~~~~l~~~~-----~~~~~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~ 101 (237)
|......+...+..-+ .++. +||-||+.+|.....++.- + ...|+++|+|+...+.+-.-.+..+|+-.+..
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gs-kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~ 129 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGS-KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILE 129 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT--EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES
T ss_pred cCchhhHHHHHHHcCccccCCCCCC-EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeec
Confidence 4333444666664432 2333 9999999999988888764 2 34899999999665555444433479999999
Q ss_pred ccccccccc--CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 102 DVRQMDEFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 102 d~~~~~~~~--~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+.....+. -+.+|+|+++- ..+.+..-++.++...||+||.+++..
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DV---------aQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDV---------AQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE----------SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEecC---------CChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 998765322 35889998752 244778888999999999999998865
No 229
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=3.5e-06 Score=69.08 Aligned_cols=118 Identities=21% Similarity=0.301 Sum_probs=80.3
Q ss_pred cCCcChHHHHHhhCCCCC-----CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc---C-----------
Q 026558 31 QKYPSLAPLIKLYVPSHH-----QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY---S----------- 91 (237)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~-----~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~---~----------- 91 (237)
.-+..+...|..+.++.. -+||-.|||.|+++..++..|+ .+-|=|+|--|+=-..-.+ +
T Consensus 129 ~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfI 207 (369)
T KOG2798|consen 129 QLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFI 207 (369)
T ss_pred hhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeee
Confidence 345566777777776522 2899999999999999999886 6666677666543322100 0
Q ss_pred ----------------------------CCCCcEEEEcccccccc--ccCCCccEEEeccccceeccCCCChHHHHHHHH
Q 026558 92 ----------------------------NRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLK 141 (237)
Q Consensus 92 ----------------------------~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~ 141 (237)
...+.....+|+.+.-. -..+.||+|+....++.. .+..++|+
T Consensus 208 h~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa-------~NileYi~ 280 (369)
T KOG2798|consen 208 HQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA-------HNILEYID 280 (369)
T ss_pred eccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech-------HHHHHHHH
Confidence 00112223455544321 113469999999888877 99999999
Q ss_pred HHHHhcCCCcEEEEE
Q 026558 142 EVWRVLKDKGVYILV 156 (237)
Q Consensus 142 ~~~~~L~pgG~l~~~ 156 (237)
.+..+|+|||+++-+
T Consensus 281 tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 281 TIYKILKPGGVWINL 295 (369)
T ss_pred HHHHhccCCcEEEec
Confidence 999999999998764
No 230
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.27 E-value=1.3e-07 Score=72.99 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=72.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.++||+|+|.|.++..++... .+|++++.|..|+...+++- ..++ ...++. -.+-++|+|.|-..++--
T Consensus 114 ~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~-----ynVl--~~~ew~-~t~~k~dli~clNlLDRc-- 182 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKN-----YNVL--TEIEWL-QTDVKLDLILCLNLLDRC-- 182 (288)
T ss_pred eeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcC-----Ccee--eehhhh-hcCceeehHHHHHHHHhh--
Confidence 489999999999999888774 48999999999999988772 2222 222332 234579999998888766
Q ss_pred CCCChHHHHHHHHHHHHhcCC-CcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLKD-KGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 157 (237)
.+...+|+.+..+|+| +|++++.-
T Consensus 183 -----~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 183 -----FDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred -----cChHHHHHHHHHHhccCCCcEEEEE
Confidence 6778899999999999 78877643
No 231
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.27 E-value=2.8e-06 Score=64.75 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=77.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc--CCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY--SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~--~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
..+.|+|+|+|.++...++.. .+|++++.+|...+.|.+++ .+..|++++.+|+.+.. | +..|+|+|-. ++..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A-~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-f--e~ADvvicEm-lDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA-ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-F--ENADVVICEM-LDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhhh-ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-c--cccceeHHHH-hhHH
Confidence 389999999999998888874 49999999999999999996 45678999999999987 6 5689999863 3322
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+ =.+.+..+++.+...|+.++.++=
T Consensus 109 L----i~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 109 L----IEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred h----hcccccHHHHHHHHHhhcCCcccc
Confidence 1 113445677888889998888764
No 232
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.25 E-value=1.2e-05 Score=63.24 Aligned_cols=112 Identities=15% Similarity=0.219 Sum_probs=82.9
Q ss_pred cChHHHHHhhCC--CCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccc
Q 026558 34 PSLAPLIKLYVP--SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQM 106 (237)
Q Consensus 34 ~~~~~~l~~~~~--~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~ 106 (237)
+...+++..++. ++ ++.||||.=||..+..++..- ..+++++|+++...+.+.+..+. ...++++++++.+.
T Consensus 59 ~d~g~fl~~li~~~~a-k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLNA-KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred hHHHHHHHHHHHHhCC-ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhh
Confidence 334444444432 23 389999999999888887653 34999999999999999776642 35789999988653
Q ss_pred c-----cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 107 D-----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 107 ~-----~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
. ....+.||.+|.+.- ......+.+++.+++|+||++++-
T Consensus 138 Ld~l~~~~~~~tfDfaFvDad----------K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFVDAD----------KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HHHHHhcCCCCceeEEEEccc----------hHHHHHHHHHHHhhcccccEEEEe
Confidence 2 234678999987642 245568999999999999999874
No 233
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.25 E-value=3.6e-06 Score=65.87 Aligned_cols=89 Identities=22% Similarity=0.340 Sum_probs=69.1
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc--cccCCCccEEEeccccceec
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--EFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~~~fD~I~~~~~l~~~~ 127 (237)
++||+||=+...... ..+.-.|+.||+++ ..-.+.+.|+.+.| ..+.++||+|.++.+|.++
T Consensus 54 rlLEVGals~~N~~s--~~~~fdvt~IDLns-------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV- 117 (219)
T PF11968_consen 54 RLLEVGALSTDNACS--TSGWFDVTRIDLNS-------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFV- 117 (219)
T ss_pred eEEeecccCCCCccc--ccCceeeEEeecCC-------------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeC-
Confidence 899999965443322 22323799999977 23356778888765 2347899999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcE-----EEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGV-----YILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~-----l~~~~ 157 (237)
+++....+.+..+.+.|+|+|. ++++.
T Consensus 118 ---P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 118 ---PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred ---CCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 6789999999999999999999 77765
No 234
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=1.9e-05 Score=62.40 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=72.8
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCC-ccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGS-FDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~-fD~I~~~~~l~ 124 (237)
.+++|||+|.|-=++.++-.. ..+++.+|....-+...++-.. +.+|++++++.+.++. .... ||+|++..+
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~--~~~~~~D~vtsRAv-- 144 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG--QEKKQYDVVTSRAV-- 144 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc--cccccCcEEEeehc--
Confidence 499999999997666655222 2379999999888777776653 4568999999999886 2223 999999854
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....+++-+...+++||.+++.-
T Consensus 145 ---------a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 145 ---------ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ---------cchHHHHHHHHHhcccCCcchhhh
Confidence 445667777899999999876544
No 235
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.22 E-value=8e-06 Score=67.77 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=84.4
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-ccCCCccEEEe
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQTGSFDSVVD 119 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~~~~fD~I~~ 119 (237)
+.++..|||++++.|.-+..+++.. ...+++.|+++.-+...+++.+ +..++.....|...... .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 3333499999999999999988864 3599999999999999998874 44577777788877632 33456999999
Q ss_pred ccccceecc-C-CCC-------------hHHHHHHHHHHHHhc----CCCcEEEEEEc
Q 026558 120 KGTLDSLLC-G-SNS-------------RQNATQMLKEVWRVL----KDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~-~-~~~-------------~~~~~~~l~~~~~~L----~pgG~l~~~~~ 158 (237)
+.+...... . .+. ...+.++|+++.+.+ +|||+++..|.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 866543310 0 000 124567999999999 99999999985
No 236
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.17 E-value=4.7e-05 Score=63.37 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=65.3
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEcccccccc----c
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDE----F 109 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~----~ 109 (237)
+.+.+..+...+++.++|.-+|.|..+..+++.. ..+++|+|.++.+++.+++++... .++.++++++.++.. .
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 3455655544444599999999999999999863 369999999999999999988543 478899999887642 2
Q ss_pred cCCCccEEEec
Q 026558 110 QTGSFDSVVDK 120 (237)
Q Consensus 110 ~~~~fD~I~~~ 120 (237)
...++|.|+.+
T Consensus 89 ~~~~vDgIl~D 99 (305)
T TIGR00006 89 LVTKIDGILVD 99 (305)
T ss_pred CCCcccEEEEe
Confidence 23568888885
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=8.8e-06 Score=62.48 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=74.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|||+|+|+|..++..+..|...++..|+.|...+..+-|.+. ..++.+...|... . ...||+|+....+..-
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~---~~~~Dl~LagDlfy~~- 155 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S---PPAFDLLLAGDLFYNH- 155 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C---CcceeEEEeeceecCc-
Confidence 49999999999999999999977999999999888888877753 2367777777665 2 5789999998765433
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcE-EEEEEcCCc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGV-YILVTYGAP 161 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~-l~~~~~~~~ 161 (237)
.....++. ..+.|+..|. +++-+.+++
T Consensus 156 ------~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 156 ------TEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred ------hHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 55666777 6666655554 444444443
No 238
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=4.8e-05 Score=58.78 Aligned_cols=120 Identities=16% Similarity=0.231 Sum_probs=87.4
Q ss_pred eecCCcChHHHHHhhCC----CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccc
Q 026558 29 WYQKYPSLAPLIKLYVP----SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV 103 (237)
Q Consensus 29 ~~~~~~~~~~~l~~~~~----~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~ 103 (237)
|......+...+-.-+. .++.+||-||+.+|.....++.-. ...++++++|+...+..-..+...+|+-.+..|+
T Consensus 54 Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA 133 (231)
T COG1889 54 WNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDA 133 (231)
T ss_pred eCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeeccc
Confidence 54444445555544322 222399999999999988887753 3489999999998887777766668999999999
Q ss_pred cccccc--cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 104 RQMDEF--QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 104 ~~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....+ --+..|+|+.+- ..+.+..-+..++...|++||.+++..
T Consensus 134 ~~P~~Y~~~Ve~VDviy~DV---------AQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 134 RKPEKYRHLVEKVDVIYQDV---------AQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred CCcHHhhhhcccccEEEEec---------CCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 876432 235688887642 355777888999999999999777643
No 239
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.13 E-value=1.9e-05 Score=64.18 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=76.5
Q ss_pred HHHHHhhCCC-CCCcEEEEccCCc--hhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCC--cEEEEcccccccc-
Q 026558 37 APLIKLYVPS-HHQRILIVGCGNS--AFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQ--LKYIKMDVRQMDE- 108 (237)
Q Consensus 37 ~~~l~~~~~~-~~~~iLdlG~G~G--~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~~~~- 108 (237)
.+.++.+... +-...||||||-- .....+++.- .++|+.+|++|..+..++..+.+.++ ..++++|+.+...
T Consensus 57 ~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~i 136 (267)
T PF04672_consen 57 RRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAI 136 (267)
T ss_dssp HHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHH
T ss_pred HHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHH
Confidence 3344444454 4358999999963 3556666542 45999999999999999999877666 8899999987432
Q ss_pred ---------ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 109 ---------FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 109 ---------~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+.-.+.=.++...++|++ .+.++...++..+.+.|.||++|++.....
T Consensus 137 L~~p~~~~~lD~~rPVavll~~vLh~v----~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 137 LAHPEVRGLLDFDRPVAVLLVAVLHFV----PDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp HCSHHHHCC--TTS--EEEECT-GGGS-----CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred hcCHHHHhcCCCCCCeeeeeeeeeccC----CCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 112334467777899998 455788999999999999999999976544
No 240
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.09 E-value=3.2e-05 Score=64.85 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=63.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.++|||||++|.++..++++|. .|++||..+ +- ..+...+++.....|..... .+.+.+|.++|+.+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~~~~V~h~~~d~fr~~-p~~~~vDwvVcDmv------ 279 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMDTGQVEHLRADGFKFR-PPRKNVDWLVCDMV------ 279 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhCCCCEEEEeccCcccC-CCCCCCCEEEEecc------
Confidence 4999999999999999999987 999999654 21 22333478888888887664 12678999999865
Q ss_pred CCCChHHHHHHHHHHHHhcCCC
Q 026558 129 GSNSRQNATQMLKEVWRVLKDK 150 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pg 150 (237)
..+..+.+-+.+.|..|
T Consensus 280 -----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 -----EKPARVAELMAQWLVNG 296 (357)
T ss_pred -----cCHHHHHHHHHHHHhcC
Confidence 34456666677777666
No 241
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.03 E-value=9.1e-06 Score=63.48 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=60.1
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccc---cccCCCccEEEecccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMD---EFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~---~~~~~~fD~I~~~~~l 123 (237)
.|+|.-||.|..++.++.++. .|+++|++|.-+.-|+.+++- . .++.|+++|+.+.. .+....+|+|+.+.+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPW 175 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCCCC
Confidence 899999999999999998875 899999999999999999862 2 38999999998753 1444557788877654
Q ss_pred c
Q 026558 124 D 124 (237)
Q Consensus 124 ~ 124 (237)
.
T Consensus 176 g 176 (263)
T KOG2730|consen 176 G 176 (263)
T ss_pred C
Confidence 3
No 242
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.02 E-value=7.1e-05 Score=62.84 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=81.4
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHc-----C----CCCCcEEEEccccccccccCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKY-----S----NRPQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~-----~----~~~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
.+||-+|.|.|--..++.+.. ..+++-+|.+|+|++.++.+. . ..+++.++..|+.++..-....||.|+
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 499999999999999999986 569999999999999998443 1 236889999999887644456899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+.. +.- -..-.+-.-.++-.-+.+.|+++|.++++..
T Consensus 371 VDl~-DP~-tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 371 VDLP-DPS-TPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EeCC-CCC-CcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 8632 100 0000122345677888999999999999763
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.02 E-value=0.00025 Score=58.22 Aligned_cols=103 Identities=15% Similarity=0.278 Sum_probs=64.8
Q ss_pred CcEEEEccCCchhHH-HHHHc-C-CCeEEEEeCCHHHHHHHHHHcCC----CCCcEEEEccccccccccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSE-GMVDD-G-YEDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~-~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.+|+=||||.=-++. .+++. + ...++++|+++++++.+++-... ..++.|..+|..+.. ..-..||+|+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~-~dl~~~DvV~lAa 200 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT-YDLKEYDVVFLAA 200 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-T
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc-cccccCCEEEEhh
Confidence 389999999865554 44443 3 34799999999999999887641 247899999998775 4446899999875
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...- ..+...++++++.+.++||..+++-..
T Consensus 201 lVg~------~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 201 LVGM------DAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp T-S----------SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hccc------ccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 5431 335788999999999999999988753
No 244
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.99 E-value=3e-05 Score=56.92 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=71.4
Q ss_pred eEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCC-CccEEEeccccceeccCC----CChHHHHHHHHHH
Q 026558 72 DVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG-SFDSVVDKGTLDSLLCGS----NSRQNATQMLKEV 143 (237)
Q Consensus 72 ~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~-~fD~I~~~~~l~~~~~~~----~~~~~~~~~l~~~ 143 (237)
+|+|+||.+++++.+++++... .+++++..+-.++..+-+. ++|+++-+ |.+++.+. ..++.....++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999532 3689999888888754444 89999874 55665433 3456777899999
Q ss_pred HHhcCCCcEEEEEEcCC-chh------hhhcc--cCCCCceEEEEEe
Q 026558 144 WRVLKDKGVYILVTYGA-PIY------RLGML--RDSCSWNIKLHVI 181 (237)
Q Consensus 144 ~~~L~pgG~l~~~~~~~-~~~------~~~~~--~~~~~w~~~~~~~ 181 (237)
.++|+|||++.++.|.. +.. -..++ .....|.+.....
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~ 125 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQF 125 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEc
Confidence 99999999999988743 322 12222 4456777655544
No 245
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.00011 Score=58.42 Aligned_cols=110 Identities=18% Similarity=0.265 Sum_probs=78.8
Q ss_pred hHHHHHhhC-CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCc-EEEEcccccccc-ccCC
Q 026558 36 LAPLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQL-KYIKMDVRQMDE-FQTG 112 (237)
Q Consensus 36 ~~~~l~~~~-~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~-~~~~~d~~~~~~-~~~~ 112 (237)
+..++..+. ...+..+||+|+.||.++-.++++|...|+++|..-..+.+--++- +++ .+...|+..+.. .-.+
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d---~rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND---PRVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC---CcEEEEecCChhhCCHHHccc
Confidence 444555443 2333499999999999999999999889999999887766544332 444 345666665431 1133
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..|++++.-.+ -....+|..+..++++++.++...-
T Consensus 144 ~~d~~v~DvSF----------ISL~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 144 KPDLIVIDVSF----------ISLKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred CCCeEEEEeeh----------hhHHHHHHHHHHhcCCCceEEEEec
Confidence 78999987654 3458899999999999998887653
No 246
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.89 E-value=0.00031 Score=55.21 Aligned_cols=130 Identities=17% Similarity=0.114 Sum_probs=93.3
Q ss_pred HHhhCCCCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCcc
Q 026558 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 40 l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD 115 (237)
+..++..+. ++.|+||.-|.+..++.+.+. ..+++.|+++..++.|.++++.. +.+++..+|..... -.+..+|
T Consensus 10 va~~V~~~~-~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~~~d~~d 87 (226)
T COG2384 10 VANLVKQGA-RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL-ELEDEID 87 (226)
T ss_pred HHHHHHcCC-ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-CccCCcC
Confidence 444555665 799999999999999999874 48999999999999999998643 35667777774432 2345799
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceEEEEEe
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 181 (237)
+|+..++ +-.....+|++-.+.|+.--+++++....+..-..|+ ...+|.+..+.+
T Consensus 88 ~ivIAGM---------GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L-~~~~~~I~~E~i 143 (226)
T COG2384 88 VIVIAGM---------GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWL-SANSYEIKAETI 143 (226)
T ss_pred EEEEeCC---------cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHH-HhCCceeeeeee
Confidence 9987754 3356788899998888855578777655554433343 235666655544
No 247
>PRK10742 putative methyltransferase; Provisional
Probab=97.86 E-value=6.7e-05 Score=60.35 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=60.0
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-----------CCcEEEEccccccccccCCCccEEE
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-----------PQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
+|||+-+|+|..+..++..|. +|+++|-++.+....++.++.. .+++++.+|..++..-....||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 899999999999999999986 7999999999988888776421 3577888888775422234799999
Q ss_pred eccccce
Q 026558 119 DKGTLDS 125 (237)
Q Consensus 119 ~~~~l~~ 125 (237)
.+.++.+
T Consensus 170 lDPMfp~ 176 (250)
T PRK10742 170 LDPMFPH 176 (250)
T ss_pred ECCCCCC
Confidence 9877644
No 248
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.86 E-value=0.00015 Score=61.91 Aligned_cols=115 Identities=16% Similarity=0.188 Sum_probs=84.6
Q ss_pred CCCCCcEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc--ccCCCccEEE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE--FQTGSFDSVV 118 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~--~~~~~fD~I~ 118 (237)
++++.+|||+++-.|.-+.+++.. ....+++.|.+..-+...+.++. +..+.-++..|..+++. ++. +||.|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 444459999999999888887764 23489999999999999998884 33466777778876652 444 899999
Q ss_pred eccccce--eccCC------C-------ChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 119 DKGTLDS--LLCGS------N-------SRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 119 ~~~~l~~--~~~~~------~-------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
...+..- +.+.. . -...++++|..+...+++||+++..|.+-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 9877654 21111 0 11256678999999999999999988643
No 249
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.85 E-value=6.5e-05 Score=58.09 Aligned_cols=109 Identities=14% Similarity=0.202 Sum_probs=68.5
Q ss_pred cEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC---------CCCCcEEEEccccccc-c-ccCCCcc-E
Q 026558 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS---------NRPQLKYIKMDVRQMD-E-FQTGSFD-S 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~---------~~~~~~~~~~d~~~~~-~-~~~~~fD-~ 116 (237)
.+.|||||.|.++..++.... .-+.|.+|--.+.+..++++. ..+|+.+.+.++.... . |..++.+ .
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 799999999999999999874 388899999888888888773 1347778877776543 1 2222211 1
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.++..--|.---....+--...++.+..-+|++||.++..+.
T Consensus 143 ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 143 FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 111111110000000000123478888999999999988773
No 250
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.84 E-value=1.1e-05 Score=56.68 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=45.3
Q ss_pred EEEccCCchhHHHHHHcC---C-CeEEEEeCCHH---HHHHHHHHcCCCCCcEEEEccccccc-cccCCCccEEEecccc
Q 026558 52 LIVGCGNSAFSEGMVDDG---Y-EDVVNVDISSV---VIEAMMKKYSNRPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTL 123 (237)
Q Consensus 52 LdlG~G~G~~~~~~~~~~---~-~~~~~vD~s~~---~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l 123 (237)
||+|+..|..+..+++.. . .+++++|..+. ..+..++ ..-..+++++.++..+.. .++.+++|+|+..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 689999999988887643 1 37999999994 3333332 111247899999997642 244578999998753
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
| ..+.....++.+.+.|+|||++++-+
T Consensus 79 H-------~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 H-------SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-------CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 22677888999999999999988753
No 251
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.79 E-value=7.9e-05 Score=65.14 Aligned_cols=121 Identities=17% Similarity=0.325 Sum_probs=79.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHH----HHHHHHHHcCCCCCcEEEEcccc-ccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSV----VIEAMMKKYSNRPQLKYIKMDVR-QMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~----~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~~fD~I~~~~~l 123 (237)
..|+|..+|.|.++.++.+.. ++.+..-|. .+...-++ .-+-..+ |.. .++ .-...||+|.+++.+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydR----GLIG~yh-DWCE~fs-TYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDR----GLIGVYH-DWCEAFS-TYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhc----ccchhcc-chhhccC-CCCcchhheehhhhh
Confidence 479999999999999998775 344433332 12211111 1111111 222 233 235789999999887
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceEEEEEec
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIE 182 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 182 (237)
... ...-....++-+|.|+|+|+|.+++-+...-......+.....|........
T Consensus 438 s~~----~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 438 SLY----KDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred hhh----cccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecC
Confidence 665 3456788999999999999999999875444444444566778988887765
No 252
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.77 E-value=0.00017 Score=53.56 Aligned_cols=75 Identities=16% Similarity=0.281 Sum_probs=53.9
Q ss_pred CcEEEEccCCchhHHHHHH-----cCCCeEEEEeCCHHHHHHHHHHcCC-----CCCcEEEEccccccccccCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVD-----DGYEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~-----~~~~~~~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
..|+|+|||.|.++..++. ....+++++|.++..++.+.++.+. ..+..+...+..+.. .....++++
T Consensus 27 ~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v 104 (141)
T PF13679_consen 27 ITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES--SSDPPDILV 104 (141)
T ss_pred CEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc--ccCCCeEEE
Confidence 4899999999999999988 5445999999999999998887632 134555555554432 245677777
Q ss_pred eccccce
Q 026558 119 DKGTLDS 125 (237)
Q Consensus 119 ~~~~l~~ 125 (237)
.-+....
T Consensus 105 gLHaCG~ 111 (141)
T PF13679_consen 105 GLHACGD 111 (141)
T ss_pred Eeecccc
Confidence 6555443
No 253
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.74 E-value=9.3e-05 Score=54.77 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=46.7
Q ss_pred cEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQM 106 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~ 106 (237)
.+||+|||.|.++..+++.+. .+++++|.++.+.+.++++++ +..++.++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999998874 379999999999999999875 234677777666543
No 254
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.0012 Score=54.47 Aligned_cols=85 Identities=12% Similarity=0.232 Sum_probs=64.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc----
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE---- 108 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~---- 108 (237)
+.+.+..+.+.+.+..||.--|.|..+..+++.+. .+++|+|-++.+++.|++++.. .+++.+++.++.++..
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~ 91 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKE 91 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHh
Confidence 34555555555556999999999999999999873 4799999999999999999864 4588899988876542
Q ss_pred ccCCCccEEEec
Q 026558 109 FQTGSFDSVVDK 120 (237)
Q Consensus 109 ~~~~~fD~I~~~ 120 (237)
...+++|-|+.+
T Consensus 92 ~~i~~vDGiL~D 103 (314)
T COG0275 92 LGIGKVDGILLD 103 (314)
T ss_pred cCCCceeEEEEe
Confidence 223466666654
No 255
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.70 E-value=0.00041 Score=57.86 Aligned_cols=85 Identities=12% Similarity=0.240 Sum_probs=61.0
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc----c
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE----F 109 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~----~ 109 (237)
+.+.+..+.+.+.+.+||.--|.|..+..+++.. .++++|+|.++.+++.|++++.. ..++.++..++.++.. .
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence 4556666665555699999999999999999874 46999999999999999999864 3589999999987653 2
Q ss_pred -cCCCccEEEec
Q 026558 110 -QTGSFDSVVDK 120 (237)
Q Consensus 110 -~~~~fD~I~~~ 120 (237)
....+|-|+.+
T Consensus 89 ~~~~~~dgiL~D 100 (310)
T PF01795_consen 89 NGINKVDGILFD 100 (310)
T ss_dssp TTTS-EEEEEEE
T ss_pred cCCCccCEEEEc
Confidence 23578888875
No 256
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=0.00029 Score=53.90 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-cccccc-------cccCCCc
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQMD-------EFQTGSF 114 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d~~~~~-------~~~~~~f 114 (237)
.++. +|||+||..|+++..+.++. .+-+.|+|+-. +...+.+.++++ |+.+.. .++....
T Consensus 68 ~p~~-~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPED-TVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCC-EEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 3444 99999999999998887764 45899999843 333346666666 776532 2467889
Q ss_pred cEEEeccccceeccCCCChHHHHH----HHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQ----MLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~----~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|++.+.-........+.....+ ++.-....++|+|.++.-.+..
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 999998654322111111112222 2333455678999999988755
No 257
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=7.3e-05 Score=55.73 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=70.5
Q ss_pred CcEEEEccCCchh-HHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCC-----CCcEEEEccccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGNSAF-SEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~-~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||++|.|--.+ ++.++... ...|..+|-+++.++..++..... ..+.++..+... ........||+|++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 3899999997444 44445443 449999999999999988776321 122222222211 111345689999999
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.++-.- +...++.+.+.++|+|.|..++..
T Consensus 111 DClFfd-------E~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 111 DCLFFD-------EHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred cchhHH-------HHHHHHHHHHHHHhCcccceeEec
Confidence 887554 778899999999999999976655
No 258
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.55 E-value=0.0019 Score=50.63 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=66.8
Q ss_pred CcEEEEccCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHcC----------------------------------
Q 026558 49 QRILIVGCGNSAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYS---------------------------------- 91 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~---~~~~~~~vD~s~~~~~~a~~~~~---------------------------------- 91 (237)
-++.|.+||.|+++..+.-. .-..+++.||++.+++.|++|+.
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~ 132 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD 132 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 38999999999988765322 23489999999999999885541
Q ss_pred ----------CCCCcEEEEcccccccc----ccCCCccEEEeccccceeccCCC--ChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 92 ----------NRPQLKYIKMDVRQMDE----FQTGSFDSVVDKGTLDSLLCGSN--SRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 92 ----------~~~~~~~~~~d~~~~~~----~~~~~fD~I~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+.....+.+.|+++... ......|+|+.+-+...+-.+.. +..-...+|+.++.+|..++++.+
T Consensus 133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEE
T ss_pred HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEE
Confidence 01124577778877431 12344799999988877754443 455677899999999966666666
Q ss_pred EE
Q 026558 156 VT 157 (237)
Q Consensus 156 ~~ 157 (237)
.+
T Consensus 213 ~~ 214 (246)
T PF11599_consen 213 SD 214 (246)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 259
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.0013 Score=53.37 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=73.1
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccccc-ccCCCccEEE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDE-FQTGSFDSVV 118 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~-~~~~~fD~I~ 118 (237)
.++. +|||-|+|+|+++.++++.- -.+++.+|+.+...+.|++.++. ..++.+..-|+....- .....+|.|+
T Consensus 104 ~PGs-vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 104 RPGS-VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCC-EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence 3444 99999999999999998863 24899999999999999988852 3588999989976541 2357899998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
.+.+ .+...+..++.+|+.+|.-
T Consensus 183 LDlP------------aPw~AiPha~~~lk~~g~r 205 (314)
T KOG2915|consen 183 LDLP------------APWEAIPHAAKILKDEGGR 205 (314)
T ss_pred EcCC------------ChhhhhhhhHHHhhhcCce
Confidence 8643 3455677778888877743
No 260
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00014 Score=63.66 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=48.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQ 105 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~ 105 (237)
..++|+.||||.++..+++.- ..|+|+++++.+++.|+.+.. +..|++|+++-+.+
T Consensus 385 k~llDv~CGTG~iglala~~~-~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGV-KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhccc-cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 489999999999999998875 499999999999999999985 44599999995554
No 261
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.50 E-value=0.0013 Score=58.80 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=80.9
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHc--CCCC-CcEEEEcccccc
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKY--SNRP-QLKYIKMDVRQM 106 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~-----~~~~~~vD~s~~~~~~a~~~~--~~~~-~~~~~~~d~~~~ 106 (237)
+.+++...+.+ ...+|+|..||+|.......+.- ...++|.|+++.....|+.+. .+.. ++....+|...-
T Consensus 174 v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~ 253 (489)
T COG0286 174 VSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN 253 (489)
T ss_pred HHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC
Confidence 44555444443 33489999999998887665432 247999999999999999987 2322 345555555444
Q ss_pred ccc----cCCCccEEEeccccceecc----------------C-C-CChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 107 DEF----QTGSFDSVVDKGTLDSLLC----------------G-S-NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 107 ~~~----~~~~fD~I~~~~~l~~~~~----------------~-~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.. ..+.||.|+++.++...-. + . .....-..+++++...|+|||+..++..
T Consensus 254 ~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 254 PKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred CcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 322 3467999999987641100 0 1 1112237799999999999987665553
No 262
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00032 Score=57.40 Aligned_cols=116 Identities=19% Similarity=0.295 Sum_probs=85.4
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEcccccccc-cc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDE-FQ 110 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~-~~ 110 (237)
.+.....+.++++|-+|.|.|......+++. ...+..+|++...++..++-+. ..+++....+|...+.. ..
T Consensus 113 ~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~ 192 (337)
T KOG1562|consen 113 HLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK 192 (337)
T ss_pred ccccccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc
Confidence 3333334444589999999999999888774 4589999999999999887763 13578889998876543 34
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.||+|+.... +.+ ++.-....+.++..+.+.||+||+++.+.
T Consensus 193 ~~~~dVii~dss-dpv--gpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 193 ENPFDVIITDSS-DPV--GPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred cCCceEEEEecC-Ccc--chHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 789999998632 111 11122467789999999999999998865
No 263
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.46 E-value=0.00041 Score=57.56 Aligned_cols=77 Identities=17% Similarity=0.078 Sum_probs=42.9
Q ss_pred cEEEEccCCch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC----CCcEEEEcccc-cc---ccccCCCccEEEec
Q 026558 50 RILIVGCGNSA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVR-QM---DEFQTGSFDSVVDK 120 (237)
Q Consensus 50 ~iLdlG~G~G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~-~~---~~~~~~~fD~I~~~ 120 (237)
++||||||..- +.+..++....+++|+||++..++.|+++.... ..++++...-. .+ .....+.||+.+|+
T Consensus 105 ~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCN 184 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCN 184 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-
T ss_pred EeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEecC
Confidence 79999999863 333333332349999999999999999998532 35666544221 11 11234689999999
Q ss_pred ccccee
Q 026558 121 GTLDSL 126 (237)
Q Consensus 121 ~~l~~~ 126 (237)
.+++..
T Consensus 185 PPFy~s 190 (299)
T PF05971_consen 185 PPFYSS 190 (299)
T ss_dssp ----SS
T ss_pred CccccC
Confidence 887643
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.42 E-value=0.00032 Score=56.33 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=61.4
Q ss_pred cChHHHHHhhC---CCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc
Q 026558 34 PSLAPLIKLYV---PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE 108 (237)
Q Consensus 34 ~~~~~~l~~~~---~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~ 108 (237)
..+.++....+ +... +|+|||||.--++..+.... ...|+|+||+..+++....-... ..+.++...|...-+
T Consensus 90 ~~Ld~fY~~if~~~~~p~-sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~- 167 (251)
T PF07091_consen 90 PNLDEFYDEIFGRIPPPD-SVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP- 167 (251)
T ss_dssp GGHHHHHHHHCCCS---S-EEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-
T ss_pred hhHHHHHHHHHhcCCCCc-hhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-
Confidence 33455554444 3344 99999999999888776554 35999999999999998877632 246677777887654
Q ss_pred ccCCCccEEEecccccee
Q 026558 109 FQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~ 126 (237)
+....|+.+..=+++.+
T Consensus 168 -~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 168 -PKEPADLALLLKTLPCL 184 (251)
T ss_dssp -TTSEESEEEEET-HHHH
T ss_pred -CCCCcchhhHHHHHHHH
Confidence 46779999988777776
No 265
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.37 E-value=0.0024 Score=52.84 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=59.4
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc-CCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ-TGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~-~~~fD~I~~~~~l~~~ 126 (237)
+++|+.||.|.++..+.+.|...+.++|+++.+++..+.++.. .+..+|+.++.... ...+|+++...++..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~----~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN----KLIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC----CCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 6899999999999999888876889999999999999999843 25677887765222 4579999999877655
No 266
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.28 E-value=0.00052 Score=54.17 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=68.4
Q ss_pred CcEEEEccCCchhHHHHHHcC--------C--CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-------cccC
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--------Y--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQT 111 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--------~--~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-------~~~~ 111 (237)
.+++||++..|+++..+.++. . ..+++||+.+ ....+.+..+++|++... -|..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~---------MaPI~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP---------MAPIEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc---------CCccCceEEeecccCCHhHHHHHHHHhCC
Confidence 499999999999998887752 1 1399999855 223357888999998743 1556
Q ss_pred CCccEEEeccccceeccCCCC------hHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 112 GSFDSVVDKGTLDSLLCGSNS------RQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~------~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++.|+|+|.+..+.. +.++ .+.+...|.-...+|+|||.|+.-.
T Consensus 114 ekAdlVvcDGAPDvT--GlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVT--GLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred CCccEEEeCCCCCcc--ccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 799999999875432 1111 1223345666778999999998744
No 267
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0026 Score=53.80 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=79.7
Q ss_pred HhhCCCCCCcEEEEccCCchhHHHHHHcCC-----CeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEcccccccc-----
Q 026558 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGY-----EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE----- 108 (237)
Q Consensus 41 ~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~-----~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~----- 108 (237)
..-+.++. +|||+++-.|+-+..+.+..+ ..+++=|+++.-+...+...+. .++..+...|+..++.
T Consensus 150 ~L~v~p~~-~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 150 ALGVKPGD-KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hcccCCCC-eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence 33344555 999999999999988887642 1688999999988888877743 2344555555544432
Q ss_pred ---ccCCCccEEEeccccceec---cC-------------CCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 109 ---FQTGSFDSVVDKGTLDSLL---CG-------------SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 109 ---~~~~~fD~I~~~~~l~~~~---~~-------------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.....||-|+++-+..+=. .. ..=+.-+..++.+..++|++||+++.+|.+-
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 2345799999974432110 00 0111345578999999999999999988643
No 268
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.22 E-value=0.0024 Score=49.30 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=67.1
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHH----------HHHHHHHHcCCCCCcEEEEccccccccccCCCccE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSV----------VIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~----------~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
..|+|+-.|.|.++.-++..- ...|+++-..+. +-..+++. ...|++.+-.+...+. +.+..|+
T Consensus 50 ~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~--~~aN~e~~~~~~~A~~--~pq~~d~ 125 (238)
T COG4798 50 ATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP--VYANVEVIGKPLVALG--APQKLDL 125 (238)
T ss_pred CEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh--hhhhhhhhCCcccccC--CCCcccc
Confidence 399999999999999887752 125555543332 11111111 1235555555555443 4566777
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+......|.+...+-+.....++...+++.|||||++++.+.
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 777655554433333456778899999999999999999874
No 269
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.18 E-value=0.0022 Score=51.12 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=72.8
Q ss_pred CCCCCcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc--cCCCccEEEec
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDK 120 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~I~~~ 120 (237)
.++. +||-||+++|.....+..- + ...|+++|.|+..=+.+-...+..+|+-.+..|+.....+ .-.-.|+||++
T Consensus 155 kpGs-KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 155 KPGS-KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred cCCc-eEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 4454 9999999999888777664 2 2389999999766554444444447888888888765311 12355666654
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+.+..-+.-++...|++||-+++..
T Consensus 234 ---------vaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 234 ---------VAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ---------CCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 3455777777888999999999998865
No 270
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0041 Score=45.87 Aligned_cols=100 Identities=12% Similarity=0.231 Sum_probs=70.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc--CC-CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY--SN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~--~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
++.+|+|+|.|.+....++.+.-..+|+|++|..+..++-+. .+ ....+|..-|+.+.. +. .|..++..+.-
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d-l~--dy~~vviFgae-- 148 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD-LR--DYRNVVIFGAE-- 148 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc-cc--ccceEEEeehH--
Confidence 599999999999999999998448999999999998887654 11 246788888888775 43 34444433332
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+....+-..+..-|..|..++.--+.-|
T Consensus 149 --------s~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 149 --------SVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred --------HHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 2234455556667788877776655444
No 271
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.001 Score=55.81 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=66.4
Q ss_pred CcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCCC--C----CcEEEEccccccccccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR--P----QLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~~--~----~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
++|||+|.|.|..+.++-.-.. ..++.++.|+..-+....-..+. . ...-+..|-..++ ....|++++..
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp--~ad~ytl~i~~ 192 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP--AADLYTLAIVL 192 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC--ccceeehhhhh
Confidence 4899999999988766655442 37788888886655544333210 0 1112222333333 34456666654
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
.-|-+. .........++.+..++.|||.+++...+.|.
T Consensus 193 ~eLl~d----~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 193 DELLPD----GNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhccc----cCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 443333 22334556899999999999999999876664
No 272
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.03 E-value=0.013 Score=46.91 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=58.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccc-ccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~-~~~~~~~fD~I~~~~~l~~~ 126 (237)
++||-+|=+--......+.....+++.+||++..++..++..+. .-+++.+..|+.+. |..-.++||+++++.+.
T Consensus 46 k~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy--- 122 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY--- 122 (243)
T ss_dssp -EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S---
T ss_pred CEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC---
Confidence 48999985553222222223356999999999999998877642 12489999999874 32335899999998653
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCc-EEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKG-VYILV 156 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG-~l~~~ 156 (237)
..+-..-++......|+..| ..++.
T Consensus 123 -----T~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 123 -----TPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp -----SHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred -----CHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 33788899999999999766 44443
No 273
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.97 E-value=0.0024 Score=50.75 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=41.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~ 88 (237)
+..+|.....++. .|||.-||+|+.+.++.+.+- +.+|+|+++..++.|++
T Consensus 181 ~~~lI~~~t~~gd-iVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 181 IERLIKASTNPGD-IVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHS-TT--EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHhhhccce-eeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 6677777777776 999999999999999998876 89999999999999875
No 274
>PRK11524 putative methyltransferase; Provisional
Probab=96.95 E-value=0.0027 Score=52.78 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=46.8
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+..+|.....++. .|||.-||+|+.+.++.+.+- +++|+|++++.++.|++++.
T Consensus 198 ~erlI~~~S~~GD-~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 198 LKRIILASSNPGD-IVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHhCCCCC-EEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence 5556666667776 999999999999999888875 99999999999999999974
No 275
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.93 E-value=0.0095 Score=53.37 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=65.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-----------cc-c-------
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----------MD-E------- 108 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-----------~~-~------- 108 (237)
.+|+-+|||. |..++..++...+.|+++|.+++.++.+++.- .++...|..+ +. +
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG-----A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG-----AEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-----CeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 4999999999 77777777765458999999999999988742 2322222211 10 0
Q ss_pred -ccC--CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 109 -FQT--GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 109 -~~~--~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.+ ..+|+|+....... ......+.+++.+.+||||+++.+..
T Consensus 241 ~~~~~~~gaDVVIetag~pg-------~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPG-------KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCc-------ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 46999998643211 12233446999999999999887764
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.87 E-value=0.0081 Score=50.80 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=65.6
Q ss_pred CCCCCcEEEEccC-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc-ccccccccCCCccEEEeccc
Q 026558 45 PSHHQRILIVGCG-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-VRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 45 ~~~~~~iLdlG~G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d-~~~~~~~~~~~fD~I~~~~~ 122 (237)
.++. +|+-+|+| .|..++.+++.-..+|+++|.+++-++.|++--. ..++... ....... .+.||+|+..-.
T Consensus 165 ~pG~-~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA----d~~i~~~~~~~~~~~-~~~~d~ii~tv~ 238 (339)
T COG1064 165 KPGK-WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA----DHVINSSDSDALEAV-KEIADAIIDTVG 238 (339)
T ss_pred CCCC-EEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC----cEEEEcCCchhhHHh-HhhCcEEEECCC
Confidence 3444 88888886 3577777787433699999999999999998842 2333322 1112211 234999998533
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
...+....+.|++||++++.-..
T Consensus 239 --------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 --------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 34578889999999999998755
No 277
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.85 E-value=0.002 Score=53.93 Aligned_cols=111 Identities=15% Similarity=0.071 Sum_probs=77.4
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHH-------HHHcCCC----CCcEEEEccccccccccCCC
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM-------MKKYSNR----PQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a-------~~~~~~~----~~~~~~~~d~~~~~~~~~~~ 113 (237)
.++. .|.|.-.|||+++...+.-|. -++|.||+-.++... +.+++.. .-+.++.+|..+.+--....
T Consensus 207 ~pGd-ivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 207 KPGD-IVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred CCCC-EEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 3444 899999999999999988875 899999998887732 3333322 24678888988877344678
Q ss_pred ccEEEecccccee----------------------ccCCCC----hHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 114 FDSVVDKGTLDSL----------------------LCGSNS----RQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 114 fD~I~~~~~l~~~----------------------~~~~~~----~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
||.|+|+.+...- +++..+ .....++|.-..+.|..||++++..
T Consensus 285 fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 285 FDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred eeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 9999998664211 000000 1133456777889999999999865
No 278
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.81 E-value=0.0039 Score=53.82 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=69.4
Q ss_pred cEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcC--CCC--CcEEEEccccccccccCCCccEEEecccc
Q 026558 50 RILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYS--NRP--QLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~--~~~--~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
+|||.=+|+|.=++..+.. +..+++.-|+|+.+++..++|.+ +.. .+++.+.|+..+-......||+|=.+
T Consensus 52 ~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD--- 128 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD--- 128 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE----
T ss_pred eEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC---
Confidence 8999999999766665554 44599999999999999999973 322 47788889877632357889999554
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+ -....+|+.+.+.++.||.+.+..
T Consensus 129 -Pf-------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 -PF-------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp --S-------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred -CC-------CCccHhHHHHHHHhhcCCEEEEec
Confidence 22 445779999999999999998853
No 279
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.81 E-value=0.0074 Score=50.29 Aligned_cols=108 Identities=16% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCCCCcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-----ccccccc--cccCCCcc
Q 026558 45 PSHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-----MDVRQMD--EFQTGSFD 115 (237)
Q Consensus 45 ~~~~~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-----~d~~~~~--~~~~~~fD 115 (237)
..+. +||-+|+|+ |-.+...++. |..+++.+|+++..++.|++ +.. ..+.... .++.+.- .+....+|
T Consensus 168 k~Gs-~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga-~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 168 KKGS-KVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA-TVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred ccCC-eEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC-eEEeeccccccHHHHHHHHHhhccccCCC
Confidence 3444 999999999 7777777776 45699999999999999999 521 1111111 1111110 12335699
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcc
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 168 (237)
+.+....+ ...++.+...+++||.+++..+..+....+..
T Consensus 245 ~~~dCsG~-------------~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~ 284 (354)
T KOG0024|consen 245 VTFDCSGA-------------EVTIRAAIKATRSGGTVVLVGMGAEEIQFPII 284 (354)
T ss_pred eEEEccCc-------------hHHHHHHHHHhccCCEEEEeccCCCccccChh
Confidence 99886544 33577789999999998888877765444433
No 280
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.80 E-value=0.0095 Score=48.18 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=66.5
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-------CC-CCcEEEEcccccccc--ccCCC-ccEEE
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NR-PQLKYIKMDVRQMDE--FQTGS-FDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-------~~-~~~~~~~~d~~~~~~--~~~~~-fD~I~ 118 (237)
.||++|+|+|-.++.++..+...+...|+... +...+.+.. +. ..+.+...+..+.+. +..+. +|+|+
T Consensus 89 ~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dlil 167 (248)
T KOG2793|consen 89 NVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLIL 167 (248)
T ss_pred eEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEE
Confidence 79999999998888888866568888887543 333333321 11 134444444433221 22233 99999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+.++... +....++..+...|..+|++++.+.
T Consensus 168 asDvvy~~-------~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 168 ASDVVYEE-------ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EeeeeecC-------CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99887655 6677788888889999997666664
No 281
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.80 E-value=0.0054 Score=48.15 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=56.7
Q ss_pred CcEEEEccCCchhHHHHHHc-----CCCeEEEEeCCHHHHHH-HHHHcCCCCCcEEEEccccccccc-------cCCCcc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-----GYEDVVNVDISSVVIEA-MMKKYSNRPQLKYIKMDVRQMDEF-------QTGSFD 115 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-----~~~~~~~vD~s~~~~~~-a~~~~~~~~~~~~~~~d~~~~~~~-------~~~~fD 115 (237)
..|+|+|.-.|..++++++. ...+|+|+|++....+. +.+...-.++++++++|..+...+ ......
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~v 113 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPV 113 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SSE
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCce
Confidence 38999999999888877653 23599999996443332 222222236899999999764311 123445
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+.... |. .+.....|+....++++|+++++.+
T Consensus 114 lVilDs~-H~-------~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 114 LVILDSS-HT-------HEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEESS------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred EEEECCC-cc-------HHHHHHHHHHhCccCCCCCEEEEEe
Confidence 6665532 22 2556778888999999999998855
No 282
>PHA01634 hypothetical protein
Probab=96.74 E-value=0.0044 Score=44.50 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=40.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
++|+|+|++-|..+++++-+|...|++++.++...+..+++++
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred CEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 4999999999999999999997799999999999999999874
No 283
>PRK13699 putative methylase; Provisional
Probab=96.66 E-value=0.0068 Score=48.70 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=45.5
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+..++.....++. .|||.-||+|+.+.+..+.+. ..+|+|++++..+.+.+++.
T Consensus 153 ~~~~i~~~s~~g~-~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 153 LQPLIESFTHPNA-IVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred HHHHHHHhCCCCC-EEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHH
Confidence 4556665666665 999999999999999988875 89999999999999998874
No 284
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.66 E-value=0.0071 Score=48.47 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=47.7
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-----CC------CCcEEEEccccccccccCCCccEEE
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-----NR------PQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-----~~------~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
+|||.-+|-|..+..++..|. +|+++|-||.+....+.-++ .. .+++++.+|..++...+..+||+|.
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred EEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 899999999999999988875 99999999988666553321 11 2688999999886545578999999
Q ss_pred eccccce
Q 026558 119 DKGTLDS 125 (237)
Q Consensus 119 ~~~~l~~ 125 (237)
.+..+.+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 9877654
No 285
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.013 Score=49.67 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=75.4
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCCCcc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
.++.+......+|+|.=+|+|.=++..+.. +..+++.-|+||.+++..++|..- ..+...+..|+..+-.-....||
T Consensus 44 ~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd 123 (380)
T COG1867 44 VLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFD 123 (380)
T ss_pred HHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCcc
Confidence 344443332348999999999877766655 434899999999999999999853 23555666777665312247899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+|=.+ .+ -.+..+++.+.+.++.||++.+.
T Consensus 124 ~IDiD----PF-------GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 124 VIDID----PF-------GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred EEecC----CC-------CCCchHHHHHHHHhhcCCEEEEE
Confidence 88443 22 34466888999999999998774
No 286
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.61 E-value=0.01 Score=50.00 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=56.6
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc--cccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--EFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~~~fD~I~~~~~l~~~ 126 (237)
+++||-||.|.+..-+.+.|+..+.++|+++.+.+.-+.++. ....+|+.++. .++. .+|+++...+++.+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHHHH-T-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccccc-cceEEEeccCCceE
Confidence 689999999999999999997789999999999999999983 88889998765 2444 69999998877655
No 287
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.56 E-value=0.00089 Score=54.64 Aligned_cols=102 Identities=19% Similarity=0.223 Sum_probs=63.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHH-c------C--CCCCcE---EEEccccccccccCC--Cc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK-Y------S--NRPQLK---YIKMDVRQMDEFQTG--SF 114 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~-~------~--~~~~~~---~~~~d~~~~~~~~~~--~f 114 (237)
++|||+|||.|--.+.+...+...+...|++.+.++...-. + . ...+.. +...+..++.....+ .|
T Consensus 118 k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~~y 197 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERTHY 197 (282)
T ss_pred ceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccccch
Confidence 49999999999999999888856888999998887421110 0 0 001111 122211121101123 79
Q ss_pred cEEEeccccceeccCCCChHHHHHH-HHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQM-LKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~-l~~~~~~L~pgG~l~~~~ 157 (237)
|+|.++-++... .....+ .......++++|++++..
T Consensus 198 dlIlsSetiy~~-------~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 198 DLILSSETIYSI-------DSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred hhhhhhhhhhCc-------chhhhhHhhhhhhcCCccchhhhhh
Confidence 999998877654 444444 666677888999887753
No 288
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.52 E-value=0.017 Score=49.81 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=39.1
Q ss_pred ccCCCccEEEeccccceeccCCCC--------------------h-----------HHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNS--------------------R-----------QNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~--------------------~-----------~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
||.++.+++++...+||+..-+.+ + .|...+|+.=.+-|.|||++++..
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 789999999999999988411100 0 134457777788899999999988
Q ss_pred cCCc
Q 026558 158 YGAP 161 (237)
Q Consensus 158 ~~~~ 161 (237)
.+.+
T Consensus 238 ~Gr~ 241 (386)
T PLN02668 238 LGRT 241 (386)
T ss_pred ecCC
Confidence 7664
No 289
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.43 E-value=0.028 Score=47.44 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=56.6
Q ss_pred EEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 51 ILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 51 iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
|+||.||.|.++.-+.+.|...+.++|+++.+++.-+.++.. .+..+|+.++....-..+|+++...+++.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~----~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN----KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC----CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 689999999999999888875778899999999999998843 455678877642112358999998777665
No 290
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.42 E-value=0.0009 Score=49.66 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=39.8
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|.+++.|+|++.++++|+ ..+.-..++++++|+|||||.+-+..
T Consensus 43 F~dns~d~iyaeHvlEHl-----t~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHL-----TYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred CCCcchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 889999999999999998 56677889999999999999998865
No 291
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.40 E-value=0.018 Score=49.44 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=65.9
Q ss_pred cEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc-----ccccccC-CCccEEEecc
Q 026558 50 RILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-----QMDEFQT-GSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-----~~~~~~~-~~fD~I~~~~ 121 (237)
+|+-+|||+ |.++..+++.. ..+++.+|.++.-++.|++.... ........ ....... ..+|+++-..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 799999999 88877777764 56999999999999999996532 21111111 1111222 3699998754
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
. ....+..+.++++|+|.+++.-..
T Consensus 247 G-------------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 247 G-------------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred C-------------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 3 244789999999999999887654
No 292
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.37 E-value=0.01 Score=47.15 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=49.3
Q ss_pred cEEEEccCCchhH--HHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCC----cEEEE-cccccc-cc--ccCCCccEEEe
Q 026558 50 RILIVGCGNSAFS--EGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQ----LKYIK-MDVRQM-DE--FQTGSFDSVVD 119 (237)
Q Consensus 50 ~iLdlG~G~G~~~--~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~----~~~~~-~d~~~~-~~--~~~~~fD~I~~ 119 (237)
++||||.|..-+- +-..+.++ +.+|.|+++..++.|+..+...++ ++... .|-..+ +. -..+.||+++|
T Consensus 81 ~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlC 159 (292)
T COG3129 81 RILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLC 159 (292)
T ss_pred EEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEec
Confidence 8999987764221 11234455 999999999999999999865442 33322 222211 11 12578999999
Q ss_pred cccccee
Q 026558 120 KGTLDSL 126 (237)
Q Consensus 120 ~~~l~~~ 126 (237)
+.++|..
T Consensus 160 NPPFh~s 166 (292)
T COG3129 160 NPPFHDS 166 (292)
T ss_pred CCCcchh
Confidence 9998743
No 293
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=0.0075 Score=53.29 Aligned_cols=103 Identities=17% Similarity=0.301 Sum_probs=76.8
Q ss_pred cEEEEccCCchhHHHHHHc---C--CCeEEEEeCCHHHHHHHHHHc-C-CCCCcEEEEccccccccccCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMVDD---G--YEDVVNVDISSVVIEAMMKKY-S-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~---~--~~~~~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
+|+-+|+|.|-+.....+. . ..+++++|-+|.++...+.+- . ...++.++..|++++. .+.++.|++++- .
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~-ap~eq~DI~VSE-L 447 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWN-APREQADIIVSE-L 447 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccC-CchhhccchHHH-h
Confidence 6889999999887765443 1 238999999999988877643 1 3457899999999997 445889999875 3
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|..+ ..-+.-.++|.-+-+.|+|+|+.+=..+
T Consensus 448 LGSF----GDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 448 LGSF----GDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred hccc----cCccCCHHHHHHHHhhcCCCceEccchh
Confidence 3333 2225567789999999999998875443
No 294
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.25 E-value=0.023 Score=48.41 Aligned_cols=112 Identities=18% Similarity=0.075 Sum_probs=61.1
Q ss_pred cEEEEccCCchhHHHHHHc--------C---C------CeEEEEeCCHHHHHHHHHHcC-------CCCCcE--EEEccc
Q 026558 50 RILIVGCGNSAFSEGMVDD--------G---Y------EDVVNVDISSVVIEAMMKKYS-------NRPQLK--YIKMDV 103 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~--------~---~------~~~~~vD~s~~~~~~a~~~~~-------~~~~~~--~~~~d~ 103 (237)
+|+|+||..|..+..+.+. + . -+++.-|.=..-.+..-+.+. ..+++- -+.+.+
T Consensus 19 ~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpgSF 98 (334)
T PF03492_consen 19 RIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPGSF 98 (334)
T ss_dssp EEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES-T
T ss_pred EEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCchh
Confidence 8999999999888766442 1 0 267777763322222111110 112222 234555
Q ss_pred cccccccCCCccEEEeccccceeccCC---CC------------------h-----------HHHHHHHHHHHHhcCCCc
Q 026558 104 RQMDEFQTGSFDSVVDKGTLDSLLCGS---NS------------------R-----------QNATQMLKEVWRVLKDKG 151 (237)
Q Consensus 104 ~~~~~~~~~~fD~I~~~~~l~~~~~~~---~~------------------~-----------~~~~~~l~~~~~~L~pgG 151 (237)
-+-. +|.++.|++++..++||+..-+ .+ . .+...+|+.=.+-|+|||
T Consensus 99 y~rL-fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG 177 (334)
T PF03492_consen 99 YGRL-FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGG 177 (334)
T ss_dssp TS---S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred hhcc-CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCc
Confidence 4444 7899999999999999884211 00 1 245557777788899999
Q ss_pred EEEEEEcCCch
Q 026558 152 VYILVTYGAPI 162 (237)
Q Consensus 152 ~l~~~~~~~~~ 162 (237)
++++...+.+.
T Consensus 178 ~mvl~~~gr~~ 188 (334)
T PF03492_consen 178 RMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEE-ST
T ss_pred EEEEEEeeccc
Confidence 99998876654
No 295
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.11 E-value=0.042 Score=46.76 Aligned_cols=95 Identities=17% Similarity=0.258 Sum_probs=57.8
Q ss_pred CcEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-.|||. |..+..+++.. ..+++++|.+++.++.+++.-.. .-+.....+..+.. ...+.+|+|+....
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~-~~~g~~D~vid~~G---- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD-KLVNPQNDDLDHYK-AEKGYFDVSFEVSG---- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc-EEecCCcccHHHHh-ccCCCCCEEEECCC----
Confidence 3888888865 56666666654 33799999999999988874211 00000111122221 11235899887421
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....++.+.+.|++||++++...
T Consensus 245 ---------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 02356778889999999988653
No 296
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.06 E-value=0.01 Score=51.33 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=50.7
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEe
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.|||||+|||.++..+++.|...+++++.-..|.+.|++..... .++.++..-..+...-+.-..|+++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 79999999999999999999779999999999999999887432 35666554444433111223555544
No 297
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.94 E-value=0.17 Score=41.58 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=76.6
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCC-HHHHHHHHHHcC-----CCCCcEEEEccccc-cc-
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYS-----NRPQLKYIKMDVRQ-MD- 107 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s-~~~~~~a~~~~~-----~~~~~~~~~~d~~~-~~- 107 (237)
+.+.+...+..+...|+.||||-=.-...+... . .+..+|++ |++++.-++.+. ...+..++..|+.. +.
T Consensus 70 ~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~-~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~ 147 (260)
T TIGR00027 70 FDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWP-D-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPA 147 (260)
T ss_pred HHHHHHHHHhcCCcEEEEeCCccccHHHhcCCC-C-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHH
Confidence 344555555444447999999986555544322 1 34455555 666666665554 13467788888862 11
Q ss_pred -----cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 108 -----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 108 -----~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+.....-++++-+++.++ +.+....+|+.+.+...||+.+++-...
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL-----~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYL-----TEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcC-----CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 1223445578888888888 8889999999999999899988876543
No 298
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.03 Score=47.51 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=37.8
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHcCC
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG---------YEDVVNVDISSVVIEAMMKKYSN 92 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~---------~~~~~~vD~s~~~~~~a~~~~~~ 92 (237)
.+.+..++|+|+|+|.+...+++.. ..++..||+|++..+.=++++++
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3444489999999999998876531 35999999999998887777754
No 299
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.90 E-value=0.065 Score=45.55 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=60.3
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~~~ 126 (237)
+++||-||.|.+..-+...|+..+.++|+++.+++.-+.++. ...+...|+..... +....+|+++...+++.+
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~---~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~F 80 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP---HGDIILGDIKELDGEALRKSDVDVLIGGPPCQDF 80 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC---CCceeechHhhcChhhccccCCCEEEeCCCCcch
Confidence 799999999999999999998789999999999999999984 25677778876542 111279999999887765
No 300
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.87 E-value=0.0075 Score=42.01 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=26.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCC
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDIS 79 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s 79 (237)
...+|||||+|-+..-+.+.|+ .-+|+|.-
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 3899999999999999999987 78899964
No 301
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.84 E-value=0.0046 Score=50.84 Aligned_cols=91 Identities=19% Similarity=0.136 Sum_probs=64.5
Q ss_pred CcEEEEccCCchhHH-HHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~-~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
..|+|+-+|-|+++. .+...+...|+++|.+|..++..+.+.+.. ..+..+.+|.+... +....|.|...
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~--~~~~AdrVnLG---- 269 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK--PRLRADRVNLG---- 269 (351)
T ss_pred chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--ccccchheeec----
Confidence 389999999999999 778888779999999999999999888532 24455666666654 46778888654
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGV 152 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (237)
-++ .-++-...+.++|+|.|-
T Consensus 270 LlP-------Sse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 270 LLP-------SSEQGWPTAIKALKPEGG 290 (351)
T ss_pred ccc-------ccccchHHHHHHhhhcCC
Confidence 231 112233346677776643
No 302
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.78 E-value=0.012 Score=44.08 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=64.1
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHH-HHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec-
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA-MMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL- 127 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~-a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~- 127 (237)
+.+-+|+..-..=....++|.+++..+|.++--++. .+.+. ..+...|+...-..-.++||.+.|.++++|..
T Consensus 4 ~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-----ssi~p~df~~~~~~y~~~fD~~as~~siEh~GL 78 (177)
T PF03269_consen 4 SGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-----SSILPVDFAKNWQKYAGSFDFAASFSSIEHFGL 78 (177)
T ss_pred eEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-----ccccHHHHHHHHHHhhccchhhheechhccccc
Confidence 678888876666566667777789999987632221 11111 11222233221112357899999999998873
Q ss_pred ---cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 ---CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ---~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.++-.+.--...+.++.++|||||.+++...
T Consensus 79 GRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 79 GRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred cccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 2222233334567888999999999998663
No 303
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.56 E-value=0.18 Score=44.81 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=58.4
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc----------------cCCC
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----------------QTGS 113 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----------------~~~~ 113 (237)
+++|+-||.|.+..-+...|...+.++|+++.+.+.-+.++...+.......|+.++... .-..
T Consensus 90 ~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p~ 169 (467)
T PRK10458 90 RFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIPD 169 (467)
T ss_pred eEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCCC
Confidence 899999999999999988887688999999999999888874334445556677655310 1125
Q ss_pred ccEEEecccccee
Q 026558 114 FDSVVDKGTLDSL 126 (237)
Q Consensus 114 fD~I~~~~~l~~~ 126 (237)
+|+++...+++.+
T Consensus 170 ~DvL~gGpPCQ~F 182 (467)
T PRK10458 170 HDVLLAGFPCQPF 182 (467)
T ss_pred CCEEEEcCCCCcc
Confidence 8999998877665
No 304
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.54 E-value=0.0032 Score=44.08 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=32.1
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+||+|+|-++.-+++ .+.+.+-...+++.+++.|+|||++++..
T Consensus 1 ~yDvilclSVtkWIH-Ln~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIH-LNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHH-HHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEE-ecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999988755442 01244678889999999999999999865
No 305
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.18 Score=40.65 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=71.9
Q ss_pred CCcEEEEccCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHc-CCCCCcEE--EEcccccc-ccccC-CCccEE
Q 026558 48 HQRILIVGCGNSAFSEGMVDD----G-YEDVVNVDISSVVIEAMMKKY-SNRPQLKY--IKMDVRQM-DEFQT-GSFDSV 117 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~----~-~~~~~~vD~s~~~~~~a~~~~-~~~~~~~~--~~~d~~~~-~~~~~-~~fD~I 117 (237)
....+|+|+|+..-+..+... + ..+++.+|+|...++...+.+ ...+.+.+ +++|.... ...+. ++==.+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 348999999999877766543 3 349999999999988766555 34455443 56666432 11222 222234
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+...++..+ ++..-..++..+...|+||-.+++-.
T Consensus 159 flGStlGN~-----tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 159 FLGSTLGNL-----TPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EecccccCC-----ChHHHHHHHHHHHhcCCCcceEEEec
Confidence 445566666 77888899999999999999887743
No 306
>PRK13699 putative methylase; Provisional
Probab=95.43 E-value=0.072 Score=42.80 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=42.8
Q ss_pred cEEEEcccccc-ccccCCCccEEEeccccceecc---C-----CCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 96 LKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLLC---G-----SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 96 ~~~~~~d~~~~-~~~~~~~fD~I~~~~~l~~~~~---~-----~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++++++|+.+. ..++++++|+|+++.+...-.- + ....+-...++.+++|+|||||.+++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 36788898764 3478999999999977631000 0 0111335678999999999999887654
No 307
>PRK11524 putative methyltransferase; Provisional
Probab=95.35 E-value=0.033 Score=46.32 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=43.9
Q ss_pred CCcEEEEccccccc-cccCCCccEEEecccccee--ccCC-CC------hHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 94 PQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDSL--LCGS-NS------RQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 94 ~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l~~~--~~~~-~~------~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+..++++|+.+.. .+++++||+|+++.++..- +... +. ......++.++.++|+|||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 34578999998742 3668899999999875321 0000 00 0223578999999999999998864
No 308
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.31 E-value=0.19 Score=43.51 Aligned_cols=105 Identities=13% Similarity=0.195 Sum_probs=64.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc----c-cccc-cCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR----Q-MDEF-QTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~----~-~~~~-~~~~fD~I~~~ 120 (237)
.+||.+|||. |..+..+++.... ++++++.+++.++.+++... ..++...-. . +..+ ....+|+|+..
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG----AETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC----cEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 3899999987 8888888776543 69999999999999888631 122211111 1 1112 23469999885
Q ss_pred cccc-------eecc-CCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLD-------SLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~-------~~~~-~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-.-+ ++.. ...+..+....++++.++|+++|.++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 3111 0000 00011223557888999999999998865
No 309
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.28 E-value=0.091 Score=42.85 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=35.0
Q ss_pred CcEEEEccCCchhHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHcCC
Q 026558 49 QRILIVGCGNSAFSEGMVDDG---------YEDVVNVDISSVVIEAMMKKYSN 92 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~---------~~~~~~vD~s~~~~~~a~~~~~~ 92 (237)
-+|+|+|+|+|.++..+++.. ..+++.+|+|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 389999999999998887641 24899999999999998888864
No 310
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.20 E-value=0.09 Score=47.17 Aligned_cols=96 Identities=17% Similarity=0.300 Sum_probs=62.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-----------cc-c-------
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----------MD-E------- 108 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-----------~~-~------- 108 (237)
.+++-+|+|. |.....++......++++|.++..++.++.. ..+++..|..+ +. +
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-----Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-----GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-----CCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 4999999988 6666666665445899999999988888763 12333333211 00 0
Q ss_pred -cc--CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 109 -FQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 109 -~~--~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+. -..+|+|+....+.. ...+.-+.+++.+.+|||++++=+
T Consensus 240 ~~~e~~~~~DIVI~TalipG-------~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPG-------KPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHhCCCCEEEECcccCC-------CCCCeeehHHHHhhCCCCCEEEEe
Confidence 11 256999988643321 133345788899999999987744
No 311
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.89 E-value=0.37 Score=41.00 Aligned_cols=90 Identities=10% Similarity=0.146 Sum_probs=57.2
Q ss_pred CcEEEEccCC-chhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGN-SAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+||-+|||. |..+..++++ +..+++++|.++.-++.+++ .. . .... .+.. ....+|+|+..-. .
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~---~-~~~~---~~~~--~~~g~d~viD~~G--~ 232 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD---E-TYLI---DDIP--EDLAVDHAFECVG--G 232 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC---c-eeeh---hhhh--hccCCcEEEECCC--C
Confidence 3899999876 5566666653 34589999999988888865 21 1 1111 1111 1225899886321 0
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
......+....++|+++|++++.-.
T Consensus 233 --------~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 --------RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --------CccHHHHHHHHHhCcCCcEEEEEee
Confidence 1123467888999999999987653
No 312
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.66 E-value=0.42 Score=38.89 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=68.6
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHH---Hc-C--CCeEEEEeCC--------------------------HHH
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMV---DD-G--YEDVVNVDIS--------------------------SVV 82 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~---~~-~--~~~~~~vD~s--------------------------~~~ 82 (237)
+..++...+.. -++.|+|.||-.|..++.++ +. + ..+++++|.- ...
T Consensus 62 L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s 141 (248)
T PF05711_consen 62 LYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVS 141 (248)
T ss_dssp HHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccC
Confidence 44445544422 22489999999997665543 22 1 2367787751 124
Q ss_pred HHHHHHHcCCC----CCcEEEEccccc-cccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 83 IEAMMKKYSNR----PQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 83 ~~~a~~~~~~~----~~~~~~~~d~~~-~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++..++++... .++.++.+.+.+ ++..+.+++-++... .+.. +.....|+.++..|.|||++++-+
T Consensus 142 ~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD--~DlY-------esT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 142 LEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLD--CDLY-------ESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp HHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SH-------HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEe--ccch-------HHHHHHHHHHHhhcCCCeEEEEeC
Confidence 56666776532 478999999865 333334444333332 2333 788999999999999999999988
Q ss_pred cCCch
Q 026558 158 YGAPI 162 (237)
Q Consensus 158 ~~~~~ 162 (237)
+..+.
T Consensus 213 Y~~~g 217 (248)
T PF05711_consen 213 YGHPG 217 (248)
T ss_dssp TTTHH
T ss_pred CCChH
Confidence 76643
No 313
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.62 E-value=0.81 Score=32.37 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=57.4
Q ss_pred cEEEEccCCc-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 50 RILIVGCGNS-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 50 ~iLdlG~G~G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
+|+|+|-|.= ..+..++++|. .++++||++. +.. ..++++..|+++..---=...|+|.|--
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR------- 78 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP--EGLRFVVDDITNPNISIYEGADLIYSIR------- 78 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc--ccceEEEccCCCccHHHhhCccceeecC-------
Confidence 8999998873 55667788886 9999999886 111 4688999999876411124578888743
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++......+-.+.+.++- .+++..
T Consensus 79 ---pppEl~~~ildva~aVga--~l~I~p 102 (129)
T COG1255 79 ---PPPELQSAILDVAKAVGA--PLYIKP 102 (129)
T ss_pred ---CCHHHHHHHHHHHHhhCC--CEEEEe
Confidence 335556666666666553 444444
No 314
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.46 E-value=0.66 Score=39.26 Aligned_cols=88 Identities=9% Similarity=0.055 Sum_probs=55.9
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+||-.|+|. |..+..+++....++++++.++.-++.+++.-. ..+ .|..+. ..+.+|+++.... .
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga-----~~v-i~~~~~---~~~~~d~~i~~~~---~- 233 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGA-----ASA-GGAYDT---PPEPLDAAILFAP---A- 233 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCC-----cee-cccccc---CcccceEEEECCC---c-
Confidence 3899899754 555556666544489999999998888877532 111 111111 1245787654211 1
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...+....+.|++||++++.-.
T Consensus 234 ---------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ---------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ---------HHHHHHHHHhhCCCcEEEEEec
Confidence 2368888999999999987653
No 315
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.40 E-value=0.14 Score=36.73 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=58.8
Q ss_pred CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----c-ccCCCccEEEeccccceeccCCC
Q 026558 57 GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----E-FQTGSFDSVVDKGTLDSLLCGSN 131 (237)
Q Consensus 57 G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~-~~~~~fD~I~~~~~l~~~~~~~~ 131 (237)
|.|..+..+++....+++++|.++.-++.+++.-. ..++..+-.++. . .....+|+|+....
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga----~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--------- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGA----DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--------- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE----SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS---------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc----cccccccccccccccccccccccceEEEEecC---------
Confidence 34777788887655799999999999999987631 122222222111 1 23357999987532
Q ss_pred ChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 132 SRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 132 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
....++....+|+++|++++.....
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ----cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1457888999999999999886543
No 316
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.33 E-value=0.45 Score=39.95 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=58.7
Q ss_pred cEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc-cc----ccccCCCccEEEecccc
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-QM----DEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~----~~~~~~~fD~I~~~~~l 123 (237)
+||..|+|. |..+..+++....++++++.++...+.+++.- +..+..+.. .. .......+|+|+....
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-----ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-----CCEEEcCCCcCHHHHHHHhcCCCceEEEECCC-
Confidence 788888764 67777777764458999999999988886532 111111111 11 0123467999886421
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....++++.+.|+++|.++....
T Consensus 242 ------------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 ------------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13467888999999999987653
No 317
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.29 E-value=0.13 Score=44.60 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCcEEEEcccccccc-ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 94 PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 94 ~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+++++.+++.+... .+++++|.++.....+++ +++...+.++++.+.++|||+++.-+...
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-----~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-----DPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-----CHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 688999999987642 568999999999999999 77899999999999999999999987554
No 318
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.27 E-value=0.26 Score=43.21 Aligned_cols=87 Identities=8% Similarity=0.107 Sum_probs=56.8
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-+|+|. |......++....+++.+|.++.....|++. .+... +..+. . ...|+|+....
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~-----G~~~~--~~~e~--v--~~aDVVI~atG----- 266 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME-----GYEVM--TMEEA--V--KEGDIFVTTTG----- 266 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc-----CCEEc--cHHHH--H--cCCCEEEECCC-----
Confidence 3999999998 6666666655434899999999887777654 22222 12221 1 35799987421
Q ss_pred cCCCChHHHHHHHHH-HHHhcCCCcEEEEEEcC
Q 026558 128 CGSNSRQNATQMLKE-VWRVLKDKGVYILVTYG 159 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~-~~~~L~pgG~l~~~~~~ 159 (237)
....+.. ..+.+++||+++.....
T Consensus 267 --------~~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 --------NKDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred --------CHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 1234444 58999999999877643
No 319
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.09 E-value=0.48 Score=39.67 Aligned_cols=115 Identities=13% Similarity=0.162 Sum_probs=78.2
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCC-HHHHHHHHHHcCCCC-----CcEEEEcccccc--c-
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYSNRP-----QLKYIKMDVRQM--D- 107 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s-~~~~~~a~~~~~~~~-----~~~~~~~d~~~~--~- 107 (237)
.+.+...+..+...|+-||||-=.-...+-.. ..+...|++ |+.++.=++.++... ..+++..|+.+. +
T Consensus 82 D~~~~~~~~~g~~qvViLgaGLDTRayRl~~~--~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~ 159 (297)
T COG3315 82 DDFVRAALDAGIRQVVILGAGLDTRAYRLDWP--KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ 159 (297)
T ss_pred HHHHHHHHHhcccEEEEeccccccceeecCCC--CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence 44455555555448999999874333222222 134444554 777777777665332 688999999742 2
Q ss_pred -----cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 108 -----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 108 -----~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.|.....=++++-+.+.++ +++...++|+.+...+.||..++....
T Consensus 160 ~L~~~G~d~~~pt~~iaEGLl~YL-----~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 160 ALAAAGFDRSRPTLWIAEGLLMYL-----PEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred HHHhcCCCcCCCeEEEeccccccC-----CHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 1335556678888899998 889999999999999999988877653
No 320
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.06 E-value=0.16 Score=42.45 Aligned_cols=107 Identities=20% Similarity=0.243 Sum_probs=72.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-------C--------------CeEEEEeCCH--HHHHHHHHHcCCC------------
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-------Y--------------EDVVNVDISS--VVIEAMMKKYSNR------------ 93 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-------~--------------~~~~~vD~s~--~~~~~a~~~~~~~------------ 93 (237)
.+||-||.|.|.-..+++... . ..++.+||.+ .+++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 389999999987655554321 0 2799999974 4455555444221
Q ss_pred -------CCcEEEEcccccccc------ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 94 -------PQLKYIKMDVRQMDE------FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 94 -------~~~~~~~~d~~~~~~------~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-++.|.+.|+..+.. +.....++|..-+++.-+|+- +.....++|..+-..++||..+++++
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~--s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST--SISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc--ChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 157789999977652 112356777776666544322 35778899999999999999999865
No 321
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.99 E-value=0.46 Score=36.91 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=68.9
Q ss_pred CCCcEEEEccCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-----ccCCCccE
Q 026558 47 HHQRILIVGCGNSAFSEGMVDD----G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-----FQTGSFDS 116 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~----~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-----~~~~~fD~ 116 (237)
.+..|+|+|.-.|..+++++.. | ..++.++||+-..++.+.... +++.|+.++-.+... ...+.+--
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~---p~i~f~egss~dpai~eqi~~~~~~y~k 145 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV---PDILFIEGSSTDPAIAEQIRRLKNEYPK 145 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC---CCeEEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 3348999999999888777653 4 249999999876665554432 789999998877531 11222333
Q ss_pred EEe-ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 117 VVD-KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 117 I~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+. -..-|+. +.....++-..++|..|-++++.+
T Consensus 146 IfvilDsdHs~-------~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 146 IFVILDSDHSM-------EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEEEecCCchH-------HHHHHHHHHhhhHhhcCceEEEec
Confidence 333 2233444 677777888889999999998865
No 322
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.74 E-value=0.36 Score=41.25 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=56.6
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeC---CHHHHHHHHHHcCCCCCcEEEEccccccc---cccCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDI---SSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~---s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~I~~~~ 121 (237)
.+||-+|+|. |.++..+++....++++++. ++.-++.+++.- ..++ +..+.. ......+|+|+...
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~G-----a~~v--~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELG-----ATYV--NSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcC-----CEEe--cCCccchhhhhhcCCCCEEEECc
Confidence 3888889865 66666677665448999987 677777776532 1221 111110 01134689888742
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. . ...+..+.+.|+++|.+++...
T Consensus 247 g--~-----------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 247 G--V-----------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred C--C-----------HHHHHHHHHHccCCcEEEEEec
Confidence 1 0 2367788999999999877653
No 323
>PTZ00357 methyltransferase; Provisional
Probab=93.66 E-value=0.21 Score=46.06 Aligned_cols=98 Identities=18% Similarity=0.338 Sum_probs=62.5
Q ss_pred cEEEEccCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHc----CC-------CCCcEEEEccccccccc----
Q 026558 50 RILIVGCGNSAFSEGMVDD----G-YEDVVNVDISSVVIEAMMKKY----SN-------RPQLKYIKMDVRQMDEF---- 109 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~----~-~~~~~~vD~s~~~~~~a~~~~----~~-------~~~~~~~~~d~~~~~~~---- 109 (237)
.|+-+|+|-|-+.....+. + ..++++||-++..+.....+. .. ...++++..|++.+..-
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999887665443 2 238999999966443333332 11 23589999999987411
Q ss_pred ------cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCC----CcE
Q 026558 110 ------QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD----KGV 152 (237)
Q Consensus 110 ------~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p----gG~ 152 (237)
.-+++|+|+|- .|..+ ..-+.-.++|.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSE-LLGSF----GDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE-LLGSL----GDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHh-hhccc----ccccCCHHHHHHHHHhhhhhcccccc
Confidence 01379999984 33333 1224455677777777776 675
No 324
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.65 E-value=0.24 Score=46.28 Aligned_cols=104 Identities=10% Similarity=-0.012 Sum_probs=60.8
Q ss_pred cEEEEccCCchhHHHHHHcC-------------CCeEEEEeCCH---HHHHHHHHH-----------c-------CCC--
Q 026558 50 RILIVGCGNSAFSEGMVDDG-------------YEDVVNVDISS---VVIEAMMKK-----------Y-------SNR-- 93 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-------------~~~~~~vD~s~---~~~~~a~~~-----------~-------~~~-- 93 (237)
+|+|+|=|+|.......+.. .-+++++|..| +.+..+... . .+.
T Consensus 60 ~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 139 (662)
T PRK01747 60 VIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCHR 139 (662)
T ss_pred EEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCceE
Confidence 89999999997655443211 12889999644 333222211 1 010
Q ss_pred -----C--CcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 94 -----P--QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 94 -----~--~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. .+.+..+|+.+...-....+|+++.+++--.- ++.-=...+++.+.++++|||++.-.+
T Consensus 140 ~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~----np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 140 LLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK----NPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred EEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc----ChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1 23456677765431123569999887531110 111223679999999999999987544
No 325
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.62 E-value=0.59 Score=39.14 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=54.2
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.++|-+|||. |.++..+++. |...+.++|.++..++.+.+.. + .|..+. ....+|+|+....
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~-------~--i~~~~~---~~~g~Dvvid~~G---- 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE-------V--LDPEKD---PRRDYRAIYDASG---- 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc-------c--cChhhc---cCCCCCEEEECCC----
Confidence 3788888876 6677777765 4435778898887776665321 1 111111 1346899987422
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....++.+.+.|+++|++++.-.
T Consensus 210 ---------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ---------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ---------CHHHHHHHHHhhhcCcEEEEEee
Confidence 12356778899999999987653
No 326
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.32 E-value=0.37 Score=40.30 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=71.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|.-||.|. |.....++--..+.|+.+|+|..-+++....+.. ++..+..+..++. ..-.+.|+|+..-.+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~--rv~~~~st~~~ie-e~v~~aDlvIgaVLI---- 241 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG--RVHTLYSTPSNIE-EAVKKADLVIGAVLI---- 241 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc--eeEEEEcCHHHHH-HHhhhccEEEEEEEe----
Confidence 3788888887 6666666655556999999999999988888754 4666666666554 233578999875222
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
++...++-..+++...|+||++++=+
T Consensus 242 ---pgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 242 ---PGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ---cCCCCceehhHHHHHhcCCCcEEEEE
Confidence 23466777899999999999988753
No 327
>PLN02494 adenosylhomocysteinase
Probab=93.31 E-value=0.51 Score=41.96 Aligned_cols=88 Identities=10% Similarity=0.148 Sum_probs=54.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|+-+|+|. |......++....+|+++|.++.....+... ...+. +..+. -...|+|++...-.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~-----G~~vv--~leEa----l~~ADVVI~tTGt~--- 320 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME-----GYQVL--TLEDV----VSEADIFVTTTGNK--- 320 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc-----CCeec--cHHHH----HhhCCEEEECCCCc---
Confidence 3899999987 5555555544334899999998654444332 12222 22222 13579998732211
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.-+..+.++.|++||+++.....
T Consensus 321 ---------~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 321 ---------DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred ---------cchHHHHHhcCCCCCEEEEcCCC
Confidence 12347788999999999887653
No 328
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.30 E-value=0.42 Score=40.37 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=56.1
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCe-EEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccccccc-cCCCccEEEeccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYED-VVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQMDEF-QTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~-~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~~~~~-~~~~fD~I~~~~~ 122 (237)
.+||-+|+|. |..+..+++....+ +++++.+++..+.+++.-. ..++.. +...+... ....+|+|+....
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga----~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g 240 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA----DFVINSGQDDVQEIRELTSGAGADVAIECSG 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC----CEEEcCCcchHHHHHHHhCCCCCCEEEECCC
Confidence 3888888754 55555666654345 9999999998888865421 111111 11111111 2346999986421
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....+..+.+.|+++|++++...
T Consensus 241 -------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 -------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 12345677889999999987653
No 329
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.23 E-value=0.45 Score=41.58 Aligned_cols=88 Identities=8% Similarity=0.077 Sum_probs=55.1
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|+-+|+|. |......++....+|+++|.++.....+... ...+. +..+. . ...|+|++.-.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~-----G~~v~--~leea--l--~~aDVVItaTG----- 259 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD-----GFRVM--TMEEA--A--KIGDIFITATG----- 259 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc-----CCEeC--CHHHH--H--hcCCEEEECCC-----
Confidence 3999999998 6666666665445999999998654444322 22222 22222 1 35699887321
Q ss_pred cCCCChHHHHHHHH-HHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLK-EVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~ 160 (237)
...++. +.+..+++|++++......
T Consensus 260 --------~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 260 --------NKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred --------CHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 133444 4888999999998876544
No 330
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.21 E-value=0.14 Score=46.30 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc----c---cccCCCcc
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----D---EFQTGSFD 115 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~----~---~~~~~~fD 115 (237)
.+.. .||||||.+|.+.-..++.. .+-|+|+|+-| +...++|.-++.|++.- + ....-+.|
T Consensus 43 ~~a~-~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p---------ikp~~~c~t~v~dIttd~cr~~l~k~l~t~~ad 112 (780)
T KOG1098|consen 43 EKAH-VVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP---------IKPIPNCDTLVEDITTDECRSKLRKILKTWKAD 112 (780)
T ss_pred cccc-hheeeccCCcHHHHHHHHhCCCCceEEEeeeee---------cccCCccchhhhhhhHHHHHHHHHHHHHhCCCc
Confidence 4444 99999999999998877764 34899999966 33446777777777531 1 02345669
Q ss_pred EEEeccccceeccCC----CChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 116 SVVDKGTLDSLLCGS----NSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+|+..++...-.... .........++-+...|+.||.++-
T Consensus 113 vVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 113 VVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred EEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 999886532110000 1112333456667788899999654
No 331
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.17 E-value=1.4 Score=30.93 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=60.5
Q ss_pred cCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccceeccC
Q 026558 56 CGNSAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLDSLLCG 129 (237)
Q Consensus 56 ~G~G~~~~~~~~~---~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~~~~~~ 129 (237)
||.|.++..+++. ....++.+|.+++.++.+++.. +.++.+|..+... ..-.+.|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~------- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGDATDPEVLERAGIEKADAVVILTD------- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES-TTSHHHHHHTTGGCESEEEEESS-------
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----cccccccchhhhHHhhcCccccCEEEEccC-------
Confidence 5667777776554 3338999999999999988773 7899999987542 23457888877422
Q ss_pred CCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 130 SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 130 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.......+....+-+.|...++......
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 1334445556677788888887766444
No 332
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.16 E-value=0.57 Score=36.15 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=60.2
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEcccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~~ 108 (237)
+|.-+|+|+ | .+...++..|. +|+.+|.+++.++.+++++.. .. ++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 366788887 4 34455566676 999999999999888876531 01 122 12222222
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
...|+|+-.- .+. .+..+++++++.+++.|+-++...+.+-+
T Consensus 77 ---~~adlViEai-~E~-------l~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 77 ---VDADLVIEAI-PED-------LELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp ---CTESEEEE-S--SS-------HHHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred ---hhhheehhhc-ccc-------HHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 2678888753 333 38889999999999999999887765443
No 333
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.11 E-value=1.3 Score=36.51 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=56.5
Q ss_pred CcEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccc-cccccc-cCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDV-RQMDEF-QTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~-~~~~~~-~~~~fD~I~~~~~l 123 (237)
.+||-+|+|. |..+..+++.. ...++++|.++..++.+++.-.. .++. .+. ...... ....+|+|+....
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT----ALAEPEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc----EecCchhhHHHHHHHhCCCCCCEEEECCC-
Confidence 3888888865 55666666654 33489999999888887764211 1111 010 011001 2346899986321
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....++.+.+.|+++|++++...
T Consensus 197 ------------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ------------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ------------ChHHHHHHHHHhcCCCEEEEecc
Confidence 12357778899999999987653
No 334
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.09 E-value=0.68 Score=38.10 Aligned_cols=103 Identities=18% Similarity=0.257 Sum_probs=74.0
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccc-ccccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~-~~~~~~~fD~I~~~~~l~~ 125 (237)
.|+-+| ..-..+++++-.+ ..++..+||++..++.-.+-.+ +..|++.+..|+.+. |+....+||+++...+ ..
T Consensus 155 ~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp-eT 232 (354)
T COG1568 155 EIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP-ET 232 (354)
T ss_pred eEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch-hh
Confidence 699998 3434444444444 4599999999999998877764 445788888899875 3233578999998744 34
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCC---cEEEEEEcCCc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDK---GVYILVTYGAP 161 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pg---G~l~~~~~~~~ 161 (237)
+ ...+.++..-...|+.- |++.+.....+
T Consensus 233 i-------~alk~FlgRGI~tLkg~~~aGyfgiT~ress 264 (354)
T COG1568 233 I-------KALKLFLGRGIATLKGEGCAGYFGITRRESS 264 (354)
T ss_pred H-------HHHHHHHhccHHHhcCCCccceEeeeecccc
Confidence 4 67788888888888866 77777665443
No 335
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.93 E-value=1.8 Score=32.77 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=60.6
Q ss_pred CcEEEEccCCchhHHHHHH--cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---cCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVD--DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~--~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~I~~~~~l 123 (237)
.+|+-|||=+-.. .+.+ ....+++..|++...-. +. ++ .|+.-|......+ -.++||+|+++.++
T Consensus 27 ~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~-----~~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF 96 (162)
T PF10237_consen 27 TRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQ-----FG--GD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF 96 (162)
T ss_pred CEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHh-----cC--Cc-ceEECCCCChhhhhhhcCCCceEEEECCCC
Confidence 3899998855333 3333 22348999999874432 21 12 4666666543222 26799999999987
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ +.+-.......+..++++++.+++.+.
T Consensus 97 --l-----~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 97 --L-----SEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred --C-----CHHHHHHHHHHHHHHhCccceEEEecH
Confidence 3 336666677777777788899988873
No 336
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.85 E-value=1 Score=38.43 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=56.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-cccc-cCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~~-~~~~fD~I~~~~ 121 (237)
.+||-.|+|. |..+..+++.... .++++|.++..++.+++.-. ..++.. +..+ .... ....+|+|+...
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA----THTVNSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----ceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 3888888765 5666666665433 59999999999888865421 122211 1111 1111 234689998632
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. . ...++...+.+++||++++.-.
T Consensus 254 g--~-----------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 254 G--R-----------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred C--C-----------HHHHHHHHHHhccCCEEEEECC
Confidence 1 0 2346667889999999987653
No 337
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.81 E-value=1.1 Score=32.35 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=52.5
Q ss_pred HHHHHhhCCCCCCcEEEEccCCc-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc-CCCc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNS-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ-TGSF 114 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~-~~~f 114 (237)
.+.+.... ... +|+|+|-|.= ..+..+.+.|. .++++|+.+. .+. ..+.++..|+.+.. +. =...
T Consensus 5 a~~ia~~~-~~~-kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~---~a~------~g~~~v~DDif~P~-l~iY~~a 71 (127)
T PF03686_consen 5 AEYIARLN-NYG-KIVEVGIGFNPEVAKKLKERGF-DVIATDINPR---KAP------EGVNFVVDDIFNPN-LEIYEGA 71 (127)
T ss_dssp HHHHHHHS--SS-EEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-------------STTEE---SSS---HHHHTTE
T ss_pred HHHHHHhC-CCC-cEEEECcCCCHHHHHHHHHcCC-cEEEEECccc---ccc------cCcceeeecccCCC-HHHhcCC
Confidence 44444433 333 8999999884 56667777885 9999999987 111 36789999998754 21 2468
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|.+..+ +...+..+-++.+.+. .-+++.+++.
T Consensus 72 ~lIYSiRP----------P~El~~~il~lA~~v~--adlii~pL~~ 105 (127)
T PF03686_consen 72 DLIYSIRP----------PPELQPPILELAKKVG--ADLIIRPLGG 105 (127)
T ss_dssp EEEEEES------------TTSHHHHHHHHHHHT---EEEEE-BTT
T ss_pred cEEEEeCC----------ChHHhHHHHHHHHHhC--CCEEEECCCC
Confidence 99988643 2333444444444443 5666666544
No 338
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.78 E-value=0.92 Score=39.01 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=56.3
Q ss_pred cEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----cccccCCCccEEEecccc
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----MDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----~~~~~~~~fD~I~~~~~l 123 (237)
+||-.|+|. |..+..+++.... .++++|.++..++.+++.-. ..++..+-.+ +.....+.+|+|+....
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G- 268 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA----TATVNAGDPNAVEQVRELTGGGVDYAFEMAG- 268 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC----ceEeCCCchhHHHHHHHHhCCCCCEEEECCC-
Confidence 788888765 5566666665433 69999999999988865421 1121111111 11112236899986421
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. ...+..+.+.|+++|.++....
T Consensus 269 -~-----------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 -S-----------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -C-----------hHHHHHHHHHHhcCCEEEEEcc
Confidence 1 2356778889999999887653
No 339
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.76 E-value=2.2 Score=33.83 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=60.6
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
+||-.|++ |.++..+ ++.|. ++++++.+++..+.+.+......++.++.+|+.+.... .-+..|.
T Consensus 7 ~vlItGa~-g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 84 (238)
T PRK05786 7 KVAIIGVS-EGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDG 84 (238)
T ss_pred EEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 78889875 4444443 44555 89999999887766655443323678888888764311 1245688
Q ss_pred EEeccccceeccCCCChH-----------HHHHHHHHHHHhcCCCcEEEEEE
Q 026558 117 VVDKGTLDSLLCGSNSRQ-----------NATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~-----------~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++........ ......+ ....+++.+.+.++++|.+++..
T Consensus 85 ii~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 85 LVVTVGGYVE-DTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred EEEcCCCcCC-CchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 8776432111 0000111 12234566666777888877765
No 340
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.44 E-value=0.36 Score=41.35 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=32.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMM 87 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~ 87 (237)
..++|+|+|.|.++..+.-.....|.+||-|....+.|+
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence 389999999999999987665459999999977766655
No 341
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=92.36 E-value=0.17 Score=43.85 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=59.4
Q ss_pred eecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CC-CcEEEEcccc
Q 026558 29 WYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RP-QLKYIKMDVR 104 (237)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~-~~~~~~~d~~ 104 (237)
|..+....+..+.....++. .|.|+.||-|-+...++..+ +.+++-|.+++++++.+.+++- .+ +++.+..|+.
T Consensus 232 WnsRL~~Eherlsg~fk~ge-vv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 232 WNSRLSHEHERLSGLFKPGE-VVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAK 309 (495)
T ss_pred eeccchhHHHHHhhccCCcc-hhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHH
Confidence 55455555667777666665 99999999999999999998 5999999999999999999852 12 4677776765
Q ss_pred cc
Q 026558 105 QM 106 (237)
Q Consensus 105 ~~ 106 (237)
.+
T Consensus 310 ~F 311 (495)
T KOG2078|consen 310 DF 311 (495)
T ss_pred HH
Confidence 43
No 342
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.35 E-value=0.32 Score=42.98 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=73.2
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccc----c--ccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMD----E--FQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~----~--~~~~~fD~I~~ 119 (237)
+.+|-+|-|.|.+...+.-.. ..++++++++|++++.|...+.- ..+..+...|..+.. . -.+..||+++.
T Consensus 297 ~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~ 376 (482)
T KOG2352|consen 297 GKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMV 376 (482)
T ss_pred CcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEE
Confidence 389999999999998886654 46999999999999999998731 123344444443221 0 24678999987
Q ss_pred cc---ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KG---TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~---~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.- -.|.+-|. ++.-....++..+..+|.|.|.+++.-
T Consensus 377 dvds~d~~g~~~p-p~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 377 DVDSKDSHGMQCP-PPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred ECCCCCcccCcCC-chHHHHHHHHHHHhhccCccceEEEEE
Confidence 41 12222122 223345678999999999999998754
No 343
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.20 E-value=0.92 Score=39.39 Aligned_cols=71 Identities=18% Similarity=0.368 Sum_probs=50.1
Q ss_pred cEEEEccCC-chhHHH-HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc--cCCCccEEEeccc
Q 026558 50 RILIVGCGN-SAFSEG-MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~-~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~I~~~~~ 122 (237)
+||-||||. |+.... +++.+..+|+..|.|.+..+.+..... .+++..+.|+.+.+.. .-..+|+|++..+
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 799999966 444433 355553599999999988888877653 2788999999876421 1244599998654
No 344
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.18 E-value=0.55 Score=41.32 Aligned_cols=88 Identities=10% Similarity=0.123 Sum_probs=54.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-+|+|. |......++....+|+.+|+++.....+... .+++ .+..+. -...|+|+..-.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~-----G~~v--~~l~ea----l~~aDVVI~aTG----- 276 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD-----GFRV--MTMEEA----AELGDIFVTATG----- 276 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc-----CCEe--cCHHHH----HhCCCEEEECCC-----
Confidence 3899999987 5544444444334999999998665444332 1222 122222 136899987421
Q ss_pred cCCCChHHHHHHHH-HHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLK-EVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~ 160 (237)
...++. .....+++|++++......
T Consensus 277 --------~~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 277 --------NKDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred --------CHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 123454 6889999999998876544
No 345
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.72 E-value=1.1 Score=37.05 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=54.4
Q ss_pred cEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|.=+|+|. |.++..+.+.++ +|+++|.++..++.+.+.. .+.....+. . .-...|+|+..-+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g----~~~~~~~~~---~--~~~~aDlVilavp~---- 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERG----LVDEASTDL---S--LLKDCDLVILALPI---- 67 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCC----CcccccCCH---h--HhcCCCEEEEcCCH----
Confidence 466788887 456666777776 8999999998888877652 111111111 1 12457999886443
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
....++++++...++++.++
T Consensus 68 ------~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 68 ------GLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ------HHHHHHHHHHHHhCCCCcEE
Confidence 44567788888888877544
No 346
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.63 E-value=1.4 Score=37.57 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=57.8
Q ss_pred CcEEEEcc-C-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc----cccc-cccccCCCccEEEecc
Q 026558 49 QRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQ-MDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~-G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~----d~~~-~~~~~~~~fD~I~~~~ 121 (237)
.+||-.|+ | .|..+..+++....++++++.+++..+.+++.+.. ..++.. +..+ ......+.+|+|+...
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa---~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF---DEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC---CEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 38888887 3 47777777776545899999999888887744421 112211 1111 1111234689888631
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ...+..+.++|+++|++++.-
T Consensus 237 G--------------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 237 G--------------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred C--------------HHHHHHHHHHhccCCEEEEEC
Confidence 1 135778899999999988654
No 347
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=91.61 E-value=0.44 Score=37.85 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=45.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC-CcEEEEccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP-QLKYIKMDVRQ 105 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~ 105 (237)
.-|++||.|.|.++..+.+.+.++...+++++..+.-.+-..+..+ ...+...|+..
T Consensus 52 ~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred ceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 3799999999999999999997799999999888777665554323 56667777754
No 348
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.45 E-value=0.13 Score=45.34 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=70.8
Q ss_pred cEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccc---cccCCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD---EFQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~---~~~~~~fD~I~~~~ 121 (237)
+|||.=|++|.-++..+..- ..++++-|.++.+++..+++.+.. .-++....|+..+- .-....||+|=.+
T Consensus 112 ~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDLD- 190 (525)
T KOG1253|consen 112 RVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDLD- 190 (525)
T ss_pred hHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEecC-
Confidence 89999999998877776652 448999999999999999988532 23455666664421 0124789999554
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+ -..-.+|+.+.+.++.||.+.+..
T Consensus 191 ---Py-------Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 191 ---PY-------GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ---CC-------CCccHHHHHHHHHhhcCCEEEEEe
Confidence 22 334668999999999999998743
No 349
>PLN02740 Alcohol dehydrogenase-like
Probab=91.40 E-value=1.8 Score=37.39 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=56.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc-----ccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-+|+|. |..+..+++.... .++++|.+++.++.+++.-. ..++... ..+ ......+.+|+|+..
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI----TDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC----cEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 3899898865 5666666665434 69999999999998865321 1122111 111 111122369999874
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
.. ....+....+.+++| |++++...
T Consensus 276 ~G-------------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 276 AG-------------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CC-------------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 22 123567777888887 98877553
No 350
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.33 E-value=2.1 Score=35.64 Aligned_cols=98 Identities=20% Similarity=0.327 Sum_probs=64.3
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEcccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~~ 108 (237)
+|--||+|+ | .+...++..|+ .|+..|.+++.++.+++++.. .. +++ ...|. .
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~---~- 80 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDL---G- 80 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCH---H-
Confidence 788899987 3 45556677776 999999999999987766421 01 111 11122 1
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhc-CCCcEEEEEEcCCch
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVTYGAPI 162 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~~~~~~ 162 (237)
.-...|+|+.. +.+ ..+....++..+-+.+ +|+.++...+..-+.
T Consensus 81 -~~~~~d~ViEa-v~E-------~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~ 126 (286)
T PRK07819 81 -DFADRQLVIEA-VVE-------DEAVKTEIFAELDKVVTDPDAVLASNTSSIPI 126 (286)
T ss_pred -HhCCCCEEEEe-ccc-------CHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 12457888875 333 3377788899999998 788777666654443
No 351
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=91.29 E-value=1.4 Score=38.85 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=67.5
Q ss_pred cEEEEccCCchhHHHHHH--cC-CCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEcc-c-c--ccccccCCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMVD--DG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMD-V-R--QMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~--~~-~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d-~-~--~~~~~~~~~fD~I~~~~ 121 (237)
.++|+|.|.|...-.+.. .. ...+..||.|..|......+..+. .+-....-. . . .+|......||+|++.+
T Consensus 203 ~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah 282 (491)
T KOG2539|consen 203 LLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICAH 282 (491)
T ss_pred HHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEeee
Confidence 788898887655444433 33 348999999999999988887541 122222112 1 1 12323456799999999
Q ss_pred ccceeccCCCChHHHHHHHHHH-HHhcCCCcEEEEEEcCC
Q 026558 122 TLDSLLCGSNSRQNATQMLKEV-WRVLKDKGVYILVTYGA 160 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~-~~~L~pgG~l~~~~~~~ 160 (237)
.++++. +........+.. .+..++|+.++++.-+.
T Consensus 283 ~l~~~~----s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 283 KLHELG----SKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeccC----CchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 998872 333444444444 55667888888876443
No 352
>PRK08267 short chain dehydrogenase; Provisional
Probab=91.25 E-value=5.9 Score=31.89 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=47.8
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc--------c--CCCcc
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--------Q--TGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--------~--~~~fD 115 (237)
++|-.|++ |.++.. +++.|. +++.++.++..++.+.+...+ .++.++.+|+.+.... . .+++|
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGA-GNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 57888864 444443 455565 899999998887777665532 4678889999764321 0 35789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+|+.+...
T Consensus 80 ~vi~~ag~ 87 (260)
T PRK08267 80 VLFNNAGI 87 (260)
T ss_pred EEEECCCC
Confidence 99987654
No 353
>PRK09072 short chain dehydrogenase; Provisional
Probab=90.81 E-value=4 Score=32.99 Aligned_cols=73 Identities=15% Similarity=0.346 Sum_probs=48.2
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc--------cCCCccEEE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--------QTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--------~~~~fD~I~ 118 (237)
+||-.|++.| .+...++++|. ++++++.++..++.....+....++.++.+|+.+.... ..+..|.++
T Consensus 7 ~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv 85 (263)
T PRK09072 7 RVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVLI 85 (263)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 7888886543 23334556665 89999999887777665543334678888898775321 125689999
Q ss_pred ecccc
Q 026558 119 DKGTL 123 (237)
Q Consensus 119 ~~~~l 123 (237)
.+...
T Consensus 86 ~~ag~ 90 (263)
T PRK09072 86 NNAGV 90 (263)
T ss_pred ECCCC
Confidence 87544
No 354
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.79 E-value=2.4 Score=33.95 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=58.2
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cccCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~~~~~fD~I~~~~~l 123 (237)
.+||..|+|. |..+..+++....++++++.++...+.+++.... .++...-.... ....+.+|+++....-
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD----HVIDYKEEDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc----eeccCCcCCHHHHHHHhcCCCCCEEEECCCC
Confidence 4899999886 6666666665445999999999888887654211 11111000110 0124679999864221
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...+..+.+.|+++|.++....
T Consensus 212 -------------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 212 -------------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred -------------HHHHHHHHHhcccCCEEEEEcc
Confidence 1356778889999999987653
No 355
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.75 E-value=1.8 Score=35.90 Aligned_cols=94 Identities=16% Similarity=0.280 Sum_probs=58.4
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC----------C----------CCcEEEEccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN----------R----------PQLKYIKMDVRQMD 107 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~----------~----------~~~~~~~~d~~~~~ 107 (237)
+|.-||+|. | .++..++..++ +|+.+|.+++.++.++++... . .++.+ ..|..+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a- 81 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA- 81 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH-
Confidence 688889887 3 34445566666 999999999998888765310 0 01111 1122211
Q ss_pred cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 108 ~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-...|+|+..-+ .. .+....+++++...++++.++...+
T Consensus 82 ---~~~aDlVieavp-e~-------~~~k~~~~~~l~~~~~~~~ii~snt 120 (287)
T PRK08293 82 ---VKDADLVIEAVP-ED-------PEIKGDFYEELAKVAPEKTIFATNS 120 (287)
T ss_pred ---hcCCCEEEEecc-CC-------HHHHHHHHHHHHhhCCCCCEEEECc
Confidence 245788887532 22 2567788899988888887664443
No 356
>PRK05872 short chain dehydrogenase; Provisional
Probab=90.67 E-value=6.5 Score=32.59 Aligned_cols=72 Identities=15% Similarity=0.325 Sum_probs=46.4
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
+||-.|++. .++.. +++.|. +++.++.++..++...+.+.....+..+.+|+.+.... ..+..|+
T Consensus 11 ~vlItGas~-gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 88 (296)
T PRK05872 11 VVVVTGAAR-GIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGIDV 88 (296)
T ss_pred EEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 788888544 44444 445565 89999999888777666654323445556888764311 1257899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 89 vI~nAG~ 95 (296)
T PRK05872 89 VVANAGI 95 (296)
T ss_pred EEECCCc
Confidence 9998654
No 357
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.62 E-value=4.2 Score=36.70 Aligned_cols=109 Identities=13% Similarity=0.202 Sum_probs=68.9
Q ss_pred CcEEEEccCCchhHHHHHHc---C--CCeEEEEeCCHHHHHHHHHHc--CCC--CCcEEEEccccccccc-cCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDD---G--YEDVVNVDISSVVIEAMMKKY--SNR--PQLKYIKMDVRQMDEF-QTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~---~--~~~~~~vD~s~~~~~~a~~~~--~~~--~~~~~~~~d~~~~~~~-~~~~fD~I~ 118 (237)
..|.|+.||+|.+.....+. + ...++|.+..+.+...++.+. .+. .......+|....+.+ ....||+|+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~ 298 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV 298 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence 48999999999988765432 2 237999999999999999874 221 2233334444332222 245699999
Q ss_pred eccccceecc-C-C----------------CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLC-G-S----------------NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~-~-~----------------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++.++..... + . +-...-..++..+..+|++||+..++-
T Consensus 299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred ecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 9876543110 0 0 001123457888999999999865543
No 358
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.47 E-value=2.3 Score=35.36 Aligned_cols=93 Identities=18% Similarity=0.273 Sum_probs=57.8
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC----------C------------CcEEEEccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----------P------------QLKYIKMDVRQ 105 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~----------~------------~~~~~~~d~~~ 105 (237)
+|.-+|+|. | .++..++..|+ +|+.+|.+++.++.+++++... . ++.+ ..|.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~-- 80 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY-- 80 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH--
Confidence 688899987 4 45555666776 8999999999998766543210 0 0111 1111
Q ss_pred cccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 106 MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 106 ~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. .-...|+|+..-+ . ..+....+++++.+.++++.+++..+
T Consensus 81 -~--~~~~aDlVieav~-e-------~~~~k~~~~~~l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -E--SLSDADFIVEAVP-E-------KLDLKRKVFAELERNVSPETIIASNT 121 (291)
T ss_pred -H--HhCCCCEEEEcCc-C-------cHHHHHHHHHHHHhhCCCCeEEEEcC
Confidence 1 1245788887532 2 22456788999999998887665433
No 359
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.41 E-value=1.2 Score=36.93 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=58.3
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEcccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~~ 108 (237)
+|.-||+|. | .++..+++.++ +|+.+|.+++.++.+.++... .. ++.+ ..+..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA--- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH---
Confidence 678888876 3 44455666776 899999999999987754310 00 1111 111111
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.-...|+|+..-+ . +.+....++.++.+.++++.++...+.
T Consensus 78 -~~~~aD~Vi~avp-e-------~~~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 78 -AVADADLVIEAVP-E-------KLELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred -hhcCCCEEEEecc-C-------CHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 1245798887532 1 224456788888899998877655443
No 360
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.24 E-value=5.4 Score=32.26 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=44.6
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
++|-.|++ |.++.. +++.|. +++.++.++..++...+... .++.++.+|+.+.... .-+..|+
T Consensus 8 ~vlItGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 8 VAIVTGGA-TLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred EEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 78888854 444444 455565 89999998876655554442 3577888899764321 1246899
Q ss_pred EEeccc
Q 026558 117 VVDKGT 122 (237)
Q Consensus 117 I~~~~~ 122 (237)
++.+..
T Consensus 84 lv~~ag 89 (261)
T PRK08265 84 LVNLAC 89 (261)
T ss_pred EEECCC
Confidence 988754
No 361
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.12 E-value=4.1 Score=30.96 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=61.0
Q ss_pred EccCCchhHHHHHHcC--CCeEEEEeCC--HHHHHHHH---HHcC--CCCCcEE-EEcccccccc---ccCCCccEEEec
Q 026558 54 VGCGNSAFSEGMVDDG--YEDVVNVDIS--SVVIEAMM---KKYS--NRPQLKY-IKMDVRQMDE---FQTGSFDSVVDK 120 (237)
Q Consensus 54 lG~G~G~~~~~~~~~~--~~~~~~vD~s--~~~~~~a~---~~~~--~~~~~~~-~~~d~~~~~~---~~~~~fD~I~~~ 120 (237)
+|=|.=+++..+++.. ...++++-+. ++..+.-. +++. ...++.+ .-.|+.++.. .....||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 5556666777777763 3366665443 33332221 2221 1123433 4557776653 246889999998
Q ss_pred cccceeccC--C----CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 121 GTLDSLLCG--S----NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 121 ~~l~~~~~~--~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+----... . ........+++.+..+|+++|.+.+.....
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 763220000 0 113456679999999999999998876444
No 362
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.04 E-value=1.2 Score=38.50 Aligned_cols=100 Identities=11% Similarity=0.136 Sum_probs=56.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-+|+|. |......+.....+++.+|.+++.++.+...+.. .+.....+..++... -..+|+|+........
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~--~v~~~~~~~~~l~~~-l~~aDvVI~a~~~~g~- 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG--RIHTRYSNAYEIEDA-VKRADLLIGAVLIPGA- 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc--eeEeccCCHHHHHHH-HccCCEEEEccccCCC-
Confidence 3799998875 5555555554334899999999887777665421 111111111122211 2468999975322100
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..+.-+-+++.+.++|+++++-+..
T Consensus 244 ------~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 ------KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred ------CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 1111134666777899988776553
No 363
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=89.96 E-value=1.6 Score=36.28 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=59.3
Q ss_pred cEEEEccCC--chhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGN--SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+|+=+|.|- |++...+.+.++ ..+++.|.+...+..+.+.- +.....+.... ......|+|+..-++
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-----v~d~~~~~~~~--~~~~~aD~VivavPi--- 74 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-----VIDELTVAGLA--EAAAEADLVIVAVPI--- 74 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-----cccccccchhh--hhcccCCEEEEeccH---
Confidence 677788776 566666777774 36899999888877776552 11111111101 124568999886443
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....+++++...|++|..+.=++
T Consensus 75 -------~~~~~~l~~l~~~l~~g~iv~Dv~ 98 (279)
T COG0287 75 -------EATEEVLKELAPHLKKGAIVTDVG 98 (279)
T ss_pred -------HHHHHHHHHhcccCCCCCEEEecc
Confidence 566889999999999997765444
No 364
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.95 E-value=4.1 Score=34.51 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=54.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---ccccccc-ccCCCcc-EEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQMDE-FQTGSFD-SVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~~~~-~~~~~fD-~I~~~~ 121 (237)
.+||-.|+|. |..+..+++.... .+++++.+++.++.+++.-. ..++.. +...... .....+| +|+..
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~- 236 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA----MQTFNSREMSAPQIQSVLRELRFDQLILET- 236 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----ceEecCcccCHHHHHHHhcCCCCCeEEEEC-
Confidence 3888888765 5666666665433 47899999998888765321 111111 1111110 1234577 65542
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. + ....+....+.|++||++++.-
T Consensus 237 ----~-----G---~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 237 ----A-----G---VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred ----C-----C---CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1 1346777889999999988764
No 365
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.91 E-value=1.5 Score=34.05 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=58.3
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CC-------------CcEEEEccccccccccCC
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RP-------------QLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~-------------~~~~~~~d~~~~~~~~~~ 112 (237)
+|--+|.|. | ..+..+++.|+ +|+|+|++++.++..++-... .+ ++.+ ..|.... -.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~a----i~ 75 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEA----IK 75 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHH----HH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhh----hh
Confidence 466677776 3 34455677887 999999999988887654321 01 1111 1122221 13
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchh
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 163 (237)
..|+++..-..-.-..+..+.....+.++.+...++++-.+++.+-.+|..
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt 126 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT 126 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee
Confidence 467777642211111111234678899999999999977777765555544
No 366
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.90 E-value=2.5 Score=35.81 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=61.3
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------C--------CCcEEEEccccccccccC
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------R--------PQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~--------~~~~~~~~d~~~~~~~~~ 111 (237)
.+|--||+|+ | .++..++..|+ +|+..|.+++.++.++..+.. . .++.+. .++.+ .-
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~----av 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA----CV 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH----Hh
Confidence 3788999986 4 45555677776 999999999988776654310 0 011111 11111 12
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...|+|+-. +.+. .+....+++++.+.++|+.++...|.
T Consensus 82 ~~aDlViEa-vpE~-------l~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 ADADFIQES-APER-------EALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred cCCCEEEEC-CcCC-------HHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 467888875 3333 37788899999999999985544443
No 367
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.65 E-value=2.4 Score=35.73 Aligned_cols=91 Identities=18% Similarity=0.310 Sum_probs=55.6
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc---ccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d---~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+||-.|||. |..+..+++.... .+++++.++...+.+++... -.++..+ ..... ...+.+|+|+.....
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~----~~vi~~~~~~~~~~~-~~~~~vd~vld~~g~ 241 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA----DETVNLARDPLAAYA-ADKGDFDVVFEASGA 241 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC----CEEEcCCchhhhhhh-ccCCCccEEEECCCC
Confidence 3788888765 5666666665433 78999999888886665321 1222111 11121 122458999874221
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...++.+.+.|+++|+++...
T Consensus 242 -------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 -------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -------------HHHHHHHHHHHhcCCEEEEEe
Confidence 234678889999999998764
No 368
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=89.38 E-value=2.8 Score=35.90 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=52.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-.|+|. |..+..+++....++++++.++.....+.+.+.. ..++. .+....... .+.+|+|+....
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga---~~vi~~~~~~~~~~~-~~~~D~vid~~g---- 256 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA---DSFLVSTDPEKMKAA-IGTMDYIIDTVS---- 256 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC---cEEEcCCCHHHHHhh-cCCCCEEEECCC----
Confidence 3777788865 6666667766445788888876554433333311 11111 111111111 125888886321
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....++++.+.|+++|+++...
T Consensus 257 ---------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 ---------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred ---------CHHHHHHHHHHhcCCcEEEEeC
Confidence 1235777889999999998764
No 369
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=89.29 E-value=5.5 Score=34.82 Aligned_cols=94 Identities=14% Similarity=0.224 Sum_probs=56.1
Q ss_pred cEEEEc-cCC-chhHHHHHHcC---CCeEEEEeCCHHHHHHHHHHcCCCC---CcEEEEcccc---ccc----cc-cCCC
Q 026558 50 RILIVG-CGN-SAFSEGMVDDG---YEDVVNVDISSVVIEAMMKKYSNRP---QLKYIKMDVR---QMD----EF-QTGS 113 (237)
Q Consensus 50 ~iLdlG-~G~-G~~~~~~~~~~---~~~~~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~---~~~----~~-~~~~ 113 (237)
+||-+| +|. |..+..+++.. ..+++++|.++..++.+++...... .......|.. ++. .. ....
T Consensus 178 ~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g 257 (410)
T cd08238 178 NTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQG 257 (410)
T ss_pred EEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCCC
Confidence 788887 454 77777777752 2379999999999999988632100 1121111211 111 11 2346
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+|+|+.... ....+....+.++++|.+++.
T Consensus 258 ~D~vid~~g-------------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 258 FDDVFVFVP-------------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCEEEEcCC-------------CHHHHHHHHHHhccCCeEEEE
Confidence 898886321 124577788999988876654
No 370
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.11 E-value=2.9 Score=35.05 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=54.6
Q ss_pred cEEEEccCC-c-hhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+|.=||+|. | .++..+.+.+. .+++++|.++..++.+++.- -......+..+. -...|+|+..-+.
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g----~~~~~~~~~~~~----~~~aDvViiavp~--- 76 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELG----LGDRVTTSAAEA----VKGADLVILCVPV--- 76 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC----CCceecCCHHHH----hcCCCEEEECCCH---
Confidence 788899887 3 34455555553 38999999998887776531 011111121111 2457999886432
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.....+++.+...++++..++..
T Consensus 77 -------~~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 77 -------GASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred -------HHHHHHHHHHHhhCCCCCEEEeC
Confidence 33466777788888888766543
No 371
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.10 E-value=3 Score=35.44 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=31.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKK 89 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~ 89 (237)
.+||-+|+|. |..+..+++....+++++|.+++.++.+++.
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 3899999865 6666666666444899999999998888654
No 372
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.07 E-value=1.9 Score=35.34 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=48.5
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
..+|+|+-.|.++..+.+++- .|+++|.-+ |.+..- ..+.++.+..|-..+. ......|-.+|+.+
T Consensus 214 ~avDLGAcPGGWTyqLVkr~m-~V~aVDng~-ma~sL~----dtg~v~h~r~DGfk~~-P~r~~idWmVCDmV 279 (358)
T COG2933 214 WAVDLGACPGGWTYQLVKRNM-RVYAVDNGP-MAQSLM----DTGQVTHLREDGFKFR-PTRSNIDWMVCDMV 279 (358)
T ss_pred eeeecccCCCccchhhhhcce-EEEEeccch-hhhhhh----cccceeeeeccCcccc-cCCCCCceEEeehh
Confidence 899999999999999999976 899999754 222222 2246777777777775 23567888888755
No 373
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=89.07 E-value=0.77 Score=37.25 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=39.1
Q ss_pred CcChHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc
Q 026558 33 YPSLAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 33 ~~~~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~ 90 (237)
-..+...|...++. ...+++|+-||+|.++..+...+. .++.-|+++..+...+..+
T Consensus 5 K~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~-~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 5 KRKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGK-RVIINDINPDLINFWKAVL 62 (260)
T ss_dssp SGGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SS-EEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhccccc-ceeeeechHHHHHHHHHHH
Confidence 34456667777775 445999999999999988876554 8999999998888777443
No 374
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=89.07 E-value=1.7 Score=33.54 Aligned_cols=102 Identities=15% Similarity=0.281 Sum_probs=60.5
Q ss_pred hHHHHHhhCC--CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCC-----CCcEEEEccccccc
Q 026558 36 LAPLIKLYVP--SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMD 107 (237)
Q Consensus 36 ~~~~l~~~~~--~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~ 107 (237)
+.+.+...+. ++...|+.||||-=.....+.... ...++-+|. |++++.-++.+... .+.+++.+|+.+..
T Consensus 65 iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~ 143 (183)
T PF04072_consen 65 IDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDS 143 (183)
T ss_dssp HHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHH
T ss_pred HHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchh
Confidence 3444555552 232389999999987777777653 336666665 66666666555321 23568999997632
Q ss_pred --------cccCCCccEEEeccccceeccCCCChHHHHHHHHHH
Q 026558 108 --------EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV 143 (237)
Q Consensus 108 --------~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~ 143 (237)
.+.....-++++-+++.++ +++....+|+.+
T Consensus 144 ~~~~L~~~g~~~~~ptl~i~Egvl~Yl-----~~~~~~~ll~~i 182 (183)
T PF04072_consen 144 WIDALPKAGFDPDRPTLFIAEGVLMYL-----SPEQVDALLRAI 182 (183)
T ss_dssp HHHHHHHCTT-TTSEEEEEEESSGGGS------HHHHHHHHHHH
T ss_pred hHHHHHHhCCCCCCCeEEEEcchhhcC-----CHHHHHHHHHHh
Confidence 1334556678888888888 777777777665
No 375
>PLN02827 Alcohol dehydrogenase-like
Probab=89.02 E-value=3.1 Score=35.96 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=54.8
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-----cccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-----DVRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----d~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-.|+|. |..+..+++. |...++++|.++...+.+++.-. . .++.. +... +.....+.+|+|+..
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa--~--~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV--T--DFINPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC--c--EEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence 3888888765 5565666655 33368899999988888865421 1 11111 1111 111122368999864
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~ 157 (237)
.. . ...+....+.+++| |++++.-
T Consensus 271 ~G--~-----------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 271 VG--D-----------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CC--C-----------hHHHHHHHHhhccCCCEEEEEC
Confidence 21 1 22466778889998 9997754
No 376
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=88.92 E-value=1.7 Score=36.18 Aligned_cols=71 Identities=15% Similarity=0.300 Sum_probs=44.0
Q ss_pred CCchhHHHHHHc----CCCeEEEEeCCHHHHHHHHHHcC---CCCCcEE----EEcccccccc----ccCCCccEEEecc
Q 026558 57 GNSAFSEGMVDD----GYEDVVNVDISSVVIEAMMKKYS---NRPQLKY----IKMDVRQMDE----FQTGSFDSVVDKG 121 (237)
Q Consensus 57 G~G~~~~~~~~~----~~~~~~~vD~s~~~~~~a~~~~~---~~~~~~~----~~~d~~~~~~----~~~~~fD~I~~~~ 121 (237)
|+|+++..++++ ++.+++.+|.++..+-..+..+. ..+++++ +.+|+.+... +....+|+|+-..
T Consensus 6 a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHaA 85 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHAA 85 (293)
T ss_dssp TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE--
T ss_pred cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEECh
Confidence 788888888765 35689999999999999988883 2235554 4888876431 5567899999998
Q ss_pred ccceec
Q 026558 122 TLDSLL 127 (237)
Q Consensus 122 ~l~~~~ 127 (237)
.+-|+.
T Consensus 86 A~KhVp 91 (293)
T PF02719_consen 86 ALKHVP 91 (293)
T ss_dssp ----HH
T ss_pred hcCCCC
Confidence 887774
No 377
>PRK08324 short chain dehydrogenase; Validated
Probab=88.87 E-value=3.6 Score=38.62 Aligned_cols=106 Identities=19% Similarity=0.258 Sum_probs=62.8
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----c-----cCCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----F-----QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~-----~~~~fD~ 116 (237)
+||-.|+ +|.++..+ ++.|. +++++|.++..++.+.+.+....++.++.+|+.+... + .-+.+|+
T Consensus 424 ~vLVTGa-sggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDv 501 (681)
T PRK08324 424 VALVTGA-AGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDI 501 (681)
T ss_pred EEEEecC-CCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 7888875 44444443 44555 8999999998877766655332467788888876431 1 1246899
Q ss_pred EEeccccceec-cCCCChHH-----------HHHHHHHHHHhcCC---CcEEEEEE
Q 026558 117 VVDKGTLDSLL-CGSNSRQN-----------ATQMLKEVWRVLKD---KGVYILVT 157 (237)
Q Consensus 117 I~~~~~l~~~~-~~~~~~~~-----------~~~~l~~~~~~L~p---gG~l~~~~ 157 (237)
|+.+....... ....+.+. ...+++.+.+.+++ +|.+++..
T Consensus 502 vI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 502 VVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 99876532110 00001111 33456667777766 57777654
No 378
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.67 E-value=7.4 Score=36.20 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=60.2
Q ss_pred CcEEEEccCC-chhHHHH-HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---cCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSEGM-VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~-~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~I~~~~~l 123 (237)
.+|+=+|||. |...... .+.+. .++.+|.+++.++.+++. +..++.+|..+..-+ .-++.|.+++. .
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vvv~--~ 472 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLESAGAAKAEVLINA--I 472 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHHHHhcCCCcCCEEEEE--e
Confidence 3788888877 5544333 33444 899999999999988763 467899999876422 23578888763 1
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ + ......+-...+.+.|+-.++....
T Consensus 473 ~-------d-~~~n~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 473 D-------D-PQTSLQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred C-------C-HHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 1 1 2223334445555677766666443
No 379
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=88.48 E-value=8.4 Score=31.33 Aligned_cols=98 Identities=8% Similarity=0.107 Sum_probs=75.4
Q ss_pred EEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccceecc
Q 026558 52 LIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 52 LdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~~~~~ 128 (237)
|..-||+-.+...+.+.. .++.++|+.|.-....++++....++++.++|-..... -+.++=-+|+.+.+++--
T Consensus 93 l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~-- 169 (279)
T COG2961 93 LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELK-- 169 (279)
T ss_pred cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccc--
Confidence 888899988888887775 49999999999999999999887899999999854210 134556788888888755
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLK--DKGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~--pgG~l~~~~ 157 (237)
.+...+++.+...++ ++|++.+..
T Consensus 170 -----~eY~rvv~~l~~~~kRf~~g~yaiWY 195 (279)
T COG2961 170 -----DEYQRVVEALAEAYKRFATGTYAIWY 195 (279)
T ss_pred -----cHHHHHHHHHHHHHHhhcCceEEEEE
Confidence 667777777766665 567776654
No 380
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=88.39 E-value=5.5 Score=34.19 Aligned_cols=93 Identities=12% Similarity=0.179 Sum_probs=56.6
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEE-c----cccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIK-M----DVRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~----d~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-.|+|. |..+..+++.... +++++|.+++.++.+++.-.. .++. . +..+ ......+.+|+|+..
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~----~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 262 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT----DCVNPNDYDKPIQEVIVEITDGGVDYSFEC 262 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC----eEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 3888888865 6666666766444 799999999999988664211 1111 1 1101 111122368988864
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
.. ....+....+.++++ |++++...
T Consensus 263 ~G-------------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 263 IG-------------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CC-------------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 21 023567778889886 98887654
No 381
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.30 E-value=11 Score=30.55 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=58.4
Q ss_pred CcEEEEccCCc-hhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCc
Q 026558 49 QRILIVGCGNS-AFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 49 ~~iLdlG~G~G-~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
+.+|-.|+++| .++.. +++.|. +++.++.++...+.+++.......+.++.+|+.+.... .-+..
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~l 89 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGRL 89 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCCC
Confidence 37888887752 44444 445565 88888887644322222211112345677888764311 12578
Q ss_pred cEEEecccccee---cc--CCCChHHHHH-----------HHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSL---LC--GSNSRQNATQ-----------MLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~---~~--~~~~~~~~~~-----------~l~~~~~~L~pgG~l~~~~ 157 (237)
|+++.+..+... .. ...+.++... +.+.+...|+.+|.++..+
T Consensus 90 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 90 DFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 999987654211 00 0112232222 3466677777778776654
No 382
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.29 E-value=5.8 Score=32.21 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=55.0
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCe-EEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYED-VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~-~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-.|+|. |..+..+++....+ +++++.+++..+.+++.-.. .. +.... ... .....+|+|+....
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~-~~--~~~~~-~~~--~~~~~~d~vl~~~~---- 168 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA-DP--VAADT-ADE--IGGRGADVVIEASG---- 168 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC-cc--ccccc-hhh--hcCCCCCEEEEccC----
Confidence 3788778765 55666666654346 99999999888876654200 11 11000 011 12456899986321
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+....+.|+++|.++...
T Consensus 169 ---------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ---------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ---------ChHHHHHHHHHhcCCcEEEEEe
Confidence 0235777889999999998764
No 383
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.19 E-value=9.6 Score=31.81 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=55.1
Q ss_pred CcEEEEccC-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCG-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+||-.|+| .|..+..+++....++++++.++..++.+++.- . ..++...-.....-..+.+|+++....
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g-~---~~~~~~~~~~~~~~~~~~~d~vi~~~~----- 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG-A---DEVVDSGAELDEQAAAGGADVILVTVV----- 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC-C---cEEeccCCcchHHhccCCCCEEEECCC-----
Confidence 378888886 466666666654348999999999888875431 1 111111100110001246898886321
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+..+.+.|+++|.++...
T Consensus 235 --------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 --------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --------cHHHHHHHHHhcccCCEEEEEC
Confidence 0235677889999999988764
No 384
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.13 E-value=4.4 Score=33.44 Aligned_cols=95 Identities=19% Similarity=0.328 Sum_probs=59.4
Q ss_pred cEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-------CCC------------CcEEEEcccccccc
Q 026558 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NRP------------QLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-------~~~------------~~~~~~~d~~~~~~ 108 (237)
+|.-+|+|. +.+...++..+. +++++|++++.++.+++++. ... ++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 577888886 456666677776 99999999999876553321 000 1111 122211
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
-...|+|+..-. .. ......+++++.+.++|+.++...+.+
T Consensus 80 --~~~aDlVi~av~-e~-------~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 --LKDADLVIEAAT-EN-------MDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred --hccCCeeeeccc-cc-------HHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 245798887522 22 245568999999999999877544433
No 385
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=88.01 E-value=3 Score=35.14 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=56.7
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc----ccccCCCccEEEecc
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~----~~~~~~~fD~I~~~~ 121 (237)
.+||-.|+ |.|..++.+++.... ++++++.+++..+.+++.+.. . .++..+-.++ .......+|+|+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa-~--~vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF-D--AAINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC-c--EEEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 38888886 346677777776544 799999999888888775421 1 1221111111 112235699998631
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ...+..+.++|+++|+++...
T Consensus 233 g--------------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G--------------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred C--------------cHHHHHHHHHhccCCEEEEEe
Confidence 1 112577889999999998753
No 386
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.99 E-value=9.7 Score=30.90 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=47.4
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccc--------cCCCccE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEF--------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~--------~~~~fD~ 116 (237)
++|-.|++.|. +...+++.|. +++.++.++..++.+.+.+.. ..++.++.+|+.+.... .-+..|+
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~ 88 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEPDI 88 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCCcE
Confidence 77888865542 3344556665 899999998877766655432 23677888898775321 1256899
Q ss_pred EEeccc
Q 026558 117 VVDKGT 122 (237)
Q Consensus 117 I~~~~~ 122 (237)
++.+..
T Consensus 89 lv~nag 94 (263)
T PRK08339 89 FFFSTG 94 (263)
T ss_pred EEECCC
Confidence 887754
No 387
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.92 E-value=2.3 Score=36.82 Aligned_cols=114 Identities=10% Similarity=0.008 Sum_probs=71.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHc----------CC-CCCcEEEEccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKY----------SN-RPQLKYIKMDV 103 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~----------~~-~~~~~~~~~d~ 103 (237)
+..+.+.+-........|+|.|-|.....++..+ ...-+|+++....-+.+..+. .. ...++.+++++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 3444554433333489999999999988887765 236778887655444443222 11 12466777777
Q ss_pred ccccc--ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 104 RQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 104 ~~~~~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+... .-....++|+++.+.- +++...+ +.+++.-|++|-+++-..
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~F-------dp~L~lr-~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAF-------DPELKLR-SKEILQKCKDGTRIISSK 308 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccC-------CHHHHHh-hHHHHhhCCCcceEeccc
Confidence 65431 2356789999987642 2233333 559999999999987644
No 388
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.88 E-value=5.9 Score=33.22 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=57.1
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHH--c--CCCCCcEEEEccccccccccCCCccEEEecccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKK--Y--SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~--~--~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
+|+-+|+|. | .++..+++.|. .|+.++-+++.++..++. + ................ ...+.+|+|+..-=-
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~--~~~~~~D~viv~vK~ 80 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETA--DAAEPIHRLLLACKA 80 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCc--ccccccCEEEEECCH
Confidence 789999988 4 45666677665 899999987666665543 1 1101111111111111 123578998874211
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+....++.+...+.++..++..-
T Consensus 81 ----------~~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 81 ----------YDAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred ----------HhHHHHHHHHHhhCCCCCEEEEEe
Confidence 245678888999999998776654
No 389
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=87.87 E-value=2.8 Score=34.25 Aligned_cols=79 Identities=18% Similarity=0.123 Sum_probs=48.9
Q ss_pred HHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHH
Q 026558 62 SEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQML 140 (237)
Q Consensus 62 ~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l 140 (237)
+..+.+.+ ..+++|+|.++..++.|++.- -+.-...+. +. -..+|+|+..-++ .....++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g----~~~~~~~~~-~~----~~~~DlvvlavP~----------~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELG----IIDEASTDI-EA----VEDADLVVLAVPV----------SAIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTT----SSSEEESHH-HH----GGCCSEEEE-S-H----------HHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCC----CeeeccCCH-hH----hcCCCEEEEcCCH----------HHHHHHH
Confidence 45666776 349999999999999887662 122222221 11 1356999986544 5668999
Q ss_pred HHHHHhcCCCcEEEEEEcC
Q 026558 141 KEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 141 ~~~~~~L~pgG~l~~~~~~ 159 (237)
+++...+++|+++.=+...
T Consensus 63 ~~~~~~~~~~~iv~Dv~Sv 81 (258)
T PF02153_consen 63 EEIAPYLKPGAIVTDVGSV 81 (258)
T ss_dssp HHHHCGS-TTSEEEE--S-
T ss_pred HHhhhhcCCCcEEEEeCCC
Confidence 9999999998777655433
No 390
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=87.81 E-value=3.1 Score=31.35 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=56.1
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|-=||+|. | .....+++.++ .+++.|.+++..+.+.+.- -....+..+.. ...|+|++.-+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g------~~~~~s~~e~~----~~~dvvi~~v~----- 66 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAG------AEVADSPAEAA----EQADVVILCVP----- 66 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTT------EEEESSHHHHH----HHBSEEEE-SS-----
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhh------hhhhhhhhhHh----hcccceEeecc-----
Confidence 455677765 2 33344555676 9999999998888777652 12223333332 23499988422
Q ss_pred cCCCChHHHHHHHHH--HHHhcCCCcEEEEEEcCCchh
Q 026558 128 CGSNSRQNATQMLKE--VWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~--~~~~L~pgG~l~~~~~~~~~~ 163 (237)
+.....+++.. +...|++|.+++-.+-..|..
T Consensus 67 ----~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~ 100 (163)
T PF03446_consen 67 ----DDDAVEAVLFGENILAGLRPGKIIIDMSTISPET 100 (163)
T ss_dssp ----SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHH
T ss_pred ----cchhhhhhhhhhHHhhccccceEEEecCCcchhh
Confidence 33677888888 889998888887666555544
No 391
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=87.80 E-value=5.4 Score=33.36 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=55.8
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCe-EEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc---ccccCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYED-VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---DEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~-~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD~I~~~~~l 123 (237)
.+||-+|+|. |..+..+++....+ +++++.+++..+.+++... . .++..+-.+. .......+|+|+....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~--~--~~~~~~~~~~~~~~~~~~~~vd~v~~~~~- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA--T--ETVDPSREDPEAQKEDNPYGFDVVIEATG- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC--e--EEecCCCCCHHHHHHhcCCCCcEEEECCC-
Confidence 3888888653 55555566654335 8899999988888755321 1 2222111111 0013456999986421
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+..+.++|+++|+++...
T Consensus 236 ------------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 236 ------------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ------------ChHHHHHHHHHHhcCCEEEEEe
Confidence 1246777889999999998764
No 392
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.77 E-value=6.2 Score=33.44 Aligned_cols=92 Identities=15% Similarity=0.193 Sum_probs=55.2
Q ss_pred CcEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-cccc-cCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~~-~~~~fD~I~~~~ 121 (237)
.+||-.|+|. |..+..+++.. ...++++|.++...+.+++.-. ..++.. +... ...+ ....+|+|+...
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA----TDIVDYKNGDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----ceEecCCCCCHHHHHHHHhCCCCCcEEEECC
Confidence 3788888754 55556666654 3369999999888877775311 112111 1110 1111 234699998632
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ....+..+.+.|+++|+++...
T Consensus 244 g-------------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 244 G-------------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEec
Confidence 1 1245788899999999988654
No 393
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=87.55 E-value=5.6 Score=35.01 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=59.5
Q ss_pred cEEEEccCCc--hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcE-----EE-EccccccccccCCCccEEEe
Q 026558 50 RILIVGCGNS--AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLK-----YI-KMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 50 ~iLdlG~G~G--~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~-----~~-~~d~~~~~~~~~~~fD~I~~ 119 (237)
+|.-+|.|.- ..+..+++.|+ +++++|+++..++..+..... .+.+. .. .+... .. ......|+|+.
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~-~~-~~~~~aDvvii 81 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLR-AT-TTPEPADAFLI 81 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCcee-ee-cccccCCEEEE
Confidence 6788888873 34455677777 999999999988864322110 00000 00 00000 00 01125788877
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
.-+-..-..+..........++.+...+++|.+++..+-..|.
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 4332100001112256677788899999988777665544443
No 394
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.55 E-value=5.3 Score=33.16 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=58.2
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---------CC----------CCcEEEEcccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---------NR----------PQLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---------~~----------~~~~~~~~d~~~~~~ 108 (237)
+|.-||+|. | .+...++..++ +|+..|.+++.++.+.+++. +. .++.+ ..|...
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 80 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED--- 80 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH---
Confidence 688889887 3 44455666776 99999999998887654321 10 01121 112211
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
-...|+|+..-+ . ..+....+++++...++++.+++..+.
T Consensus 81 --~~~aD~Vieavp-e-------~~~~k~~~~~~l~~~~~~~~ii~s~ts 120 (292)
T PRK07530 81 --LADCDLVIEAAT-E-------DETVKRKIFAQLCPVLKPEAILATNTS 120 (292)
T ss_pred --hcCCCEEEEcCc-C-------CHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 235788887522 1 224566788899999999887764443
No 395
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=87.45 E-value=3.4 Score=35.43 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=54.8
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-c----ccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKM-D----VRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d----~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-.|+|. |..+..+++.... .+++++.++..++.+++.-. . .++.. + ..+ ........+|+|+..
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga--~--~~i~~~~~~~~~~~~~~~~~~~g~d~vid~ 261 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA--T--DFINPKDSDKPVSEVIREMTGGGVDYSFEC 261 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC--C--cEeccccccchHHHHHHHHhCCCCCEEEEC
Confidence 3888888754 5555555665433 79999999998888865321 1 11111 0 011 111123468999863
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
.. ....+..+.+.|+++ |+++....
T Consensus 262 ~g-------------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 262 TG-------------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CC-------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 21 023577788899886 98887653
No 396
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.35 E-value=10 Score=35.18 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=60.3
Q ss_pred cEEEEccCC-chhHHH-HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccc
Q 026558 50 RILIVGCGN-SAFSEG-MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~-~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~ 124 (237)
+|+=+|+|. |..... +.+.+. +++.+|.+++.++.+++. +..++.+|+.+..- ..-++.|.+++. .+
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vv~~--~~ 473 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-----GYKVYYGDATQLELLRAAGAEKAEAIVIT--CN 473 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHHhcCCccCCEEEEE--eC
Confidence 677776665 443322 233444 999999999999988763 46789999987542 233567888773 21
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+ ......+-...|.+.|...++....++
T Consensus 474 -------d-~~~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 474 -------E-PEDTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred -------C-HHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 1 222333444566678888887765444
No 397
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.10 E-value=5.2 Score=33.76 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=57.4
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-c---cccc-cccccCCCccEEEecc
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-M---DVRQ-MDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~---d~~~-~~~~~~~~fD~I~~~~ 121 (237)
.+||-.|+ |.|..+..+++....++++++.+++..+.+++.+.. . .++. . +..+ +.......+|+|+..
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~i~~~~~~gvd~v~d~- 228 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF-D--DAFNYKEEPDLDAALKRYFPNGIDIYFDN- 228 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-c--eeEEcCCcccHHHHHHHhCCCCcEEEEEC-
Confidence 38888886 336666777776545899999999888888874421 1 1121 1 1111 111123568988863
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. . ...+..+.++|+++|+++...
T Consensus 229 ----~-------g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 ----V-------G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred ----C-------C--HHHHHHHHHHhccCcEEEEec
Confidence 1 1 135778899999999998654
No 398
>PRK07063 short chain dehydrogenase; Provisional
Probab=87.03 E-value=11 Score=30.37 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=47.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccc---------cCCCc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
++|-.|++.|. +...+++.|. +++.++.++..++...+.+.. ..++.++.+|+.+.... .-+..
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 87 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGPL 87 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 78888865442 2334455665 899999998877776666532 24577888898764311 12578
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+++.+...
T Consensus 88 d~li~~ag~ 96 (260)
T PRK07063 88 DVLVNNAGI 96 (260)
T ss_pred cEEEECCCc
Confidence 999887643
No 399
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=86.98 E-value=10 Score=32.45 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=55.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-c----ccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKM-D----VRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d----~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-+|+|. |..+..+++.... .++++|.+++.++.+++.-. ..++.. + ..+ ......+.+|+|+..
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa----~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 263 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGA----TDCVNPKDHDKPIQQVLVEMTDGGVDYTFEC 263 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----CEEEcccccchHHHHHHHHHhCCCCcEEEEC
Confidence 3888888754 5565666665434 69999999999888865311 112211 1 111 101123468999873
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
.. . ...+..+.+.|+++ |+++....
T Consensus 264 ~g--~-----------~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 264 IG--N-----------VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CC--C-----------hHHHHHHHHhhccCCCeEEEEcc
Confidence 11 0 23577788899887 98887653
No 400
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=86.87 E-value=2.3 Score=35.19 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=44.6
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+...+......+. .|||.-+|+|..+......+- ..+|+|++++-++.+.+++.
T Consensus 212 ~~r~i~~~s~~~d-iVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 212 IERLIRDYSFPGD-IVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred HHHHHHhcCCCCC-EEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHH
Confidence 4455555445554 999999999999998888875 89999999999999999985
No 401
>PRK07806 short chain dehydrogenase; Provisional
Probab=86.83 E-value=12 Score=29.65 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=56.9
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCH-HHHHHHHHHcCC-CCCcEEEEccccccccc----c-----CCCc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISS-VVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q-----TGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~-~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~----~-----~~~f 114 (237)
++|-.|+ +|.++..+ ++.++ ++++++.+. ...+.....++. ..++.++.+|+.+.... . -+..
T Consensus 8 ~vlItGa-sggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 85 (248)
T PRK07806 8 TALVTGS-SRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGL 85 (248)
T ss_pred EEEEECC-CCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 7888886 34444444 44565 788887653 233333332221 13567888898764321 1 1468
Q ss_pred cEEEeccccceeccCC-------CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGS-------NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~-------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+++.+...... ... .+......+++.+.+.++.+|.+++.+
T Consensus 86 d~vi~~ag~~~~-~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 86 DALVLNASGGME-SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred cEEEECCCCCCC-CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 988876532211 000 011234467777777777677776654
No 402
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.75 E-value=8.8 Score=31.79 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=54.6
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEE-Ecc-ccccccccCCCccEEEeccccce
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYI-KMD-VRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~-~~d-~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
+|+-+|+|. |. ++..+++.++ +|+.++.+++.++..++.-.....-... ... ..+.. ....+|+|+..-.-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~d~vila~k~-- 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA--ELGPQDLVILAVKA-- 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh--HcCCCCEEEEeccc--
Confidence 578889887 33 4444566665 8999999877776665532110000000 000 11111 12678999875322
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+...+++.+...+.++..++...
T Consensus 77 --------~~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 77 --------YQLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred --------ccHHHHHHHHhhhcCCCCEEEEec
Confidence 345778888888888877666544
No 403
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.60 E-value=11 Score=34.60 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=57.1
Q ss_pred cEEEEccCC-chhHHH-HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccc
Q 026558 50 RILIVGCGN-SAFSEG-MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~-~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~ 124 (237)
+|+=+|||. |..... +.+++. +++.+|.+++.++.+++. +...+.+|..+... ..-++.|.++..-.
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~-- 490 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRER-----GIRAVLGNAANEEIMQLAHLDCARWLLLTIP-- 490 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHHHHhcCccccCEEEEEcC--
Confidence 788887776 443333 333455 899999999999988753 57899999987532 23357887665211
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+ ++....+-...+...|+..++...
T Consensus 491 -------~-~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 491 -------N-GYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred -------C-hHHHHHHHHHHHHHCCCCeEEEEE
Confidence 1 122222333445567777666654
No 404
>PRK12939 short chain dehydrogenase; Provisional
Probab=86.51 E-value=9 Score=30.40 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=45.6
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc----c-----CCCcc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q-----TGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~----~-----~~~fD 115 (237)
+||-.|+ +|.++..+ ++++. ++++++.+++.++...+.+.. ..++.++.+|+.+.... . -+..|
T Consensus 9 ~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 86 (250)
T PRK12939 9 RALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLD 86 (250)
T ss_pred EEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 7887775 55555544 44555 899999888776665555432 24678888999764311 1 15689
Q ss_pred EEEeccc
Q 026558 116 SVVDKGT 122 (237)
Q Consensus 116 ~I~~~~~ 122 (237)
+|+....
T Consensus 87 ~vi~~ag 93 (250)
T PRK12939 87 GLVNNAG 93 (250)
T ss_pred EEEECCC
Confidence 9988654
No 405
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=86.37 E-value=8.1 Score=32.48 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=54.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-ccc-ccCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDE-FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~-~~~~~fD~I~~~~ 121 (237)
.+||..|+|. |..+..+++... ..+++++.++...+.+++.-. ..++.. +..+ +.. ...+.+|+|+...
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~----~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA----TDIINPKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC----cEEEcCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 3777777653 566666666543 378888888877777665421 112211 1111 110 1235799998632
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.- ...+..+.+.|+++|+++...
T Consensus 245 g~-------------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 245 GF-------------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence 10 246788889999999987654
No 406
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.36 E-value=4.5 Score=38.26 Aligned_cols=97 Identities=14% Similarity=0.217 Sum_probs=66.7
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEccccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMD 107 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~ 107 (237)
.+|--||+|+ | .+...++..|. .|+.+|.+++.++.+++++.. .. ++.+. .| +.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~ 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LS---YA 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CC---HH
Confidence 3789999998 4 45555667776 999999999999887765521 00 11111 11 11
Q ss_pred cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 108 ~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.-...|+|+-. +.+.+ +..++++.++-++++|+.++...|.+-
T Consensus 389 --~~~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasnTS~l 431 (714)
T TIGR02437 389 --GFDNVDIVVEA-VVENP-------KVKAAVLAEVEQHVREDAILASNTSTI 431 (714)
T ss_pred --HhcCCCEEEEc-CcccH-------HHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 12467888876 55544 888999999999999998887766443
No 407
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.22 E-value=4.5 Score=33.76 Aligned_cols=91 Identities=10% Similarity=0.070 Sum_probs=56.3
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-cccccCCCccEEEeccc
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~I~~~~~ 122 (237)
.+||-.|+ |.|..+..+++....++++++.+++..+.+++.- . ..++.. |..+ +.......+|+|+....
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~G-a---~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g 220 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELG-F---DAVFNYKTVSLEEALKEAAPDGIDCYFDNVG 220 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC-C---CEEEeCCCccHHHHHHHHCCCCcEEEEECCC
Confidence 37888874 3366667677765458999999998888887631 1 122211 1111 11122356898886311
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+..+.+.|+++|+++...
T Consensus 221 --------------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 --------------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred --------------HHHHHHHHHhhccCCEEEEEc
Confidence 135688899999999987653
No 408
>PRK07326 short chain dehydrogenase; Provisional
Probab=86.11 E-value=9.4 Score=30.09 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=46.3
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc----c-----CCCccE
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----Q-----TGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----~-----~~~fD~ 116 (237)
.||-.|+ +|.++..++ +.+. ++++++.++...+...+.+.....+.++.+|+.+...+ . -+.+|+
T Consensus 8 ~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 85 (237)
T PRK07326 8 VALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLDV 85 (237)
T ss_pred EEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 7888884 666555554 4555 89999998877766655543224677888888764311 1 146899
Q ss_pred EEeccc
Q 026558 117 VVDKGT 122 (237)
Q Consensus 117 I~~~~~ 122 (237)
|+....
T Consensus 86 vi~~ag 91 (237)
T PRK07326 86 LIANAG 91 (237)
T ss_pred EEECCC
Confidence 987643
No 409
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.08 E-value=3.5 Score=39.15 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=66.5
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEccccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMD 107 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~ 107 (237)
.+|--||+|+ | .+...++..|. .|+.+|.+++.++.+.+++.. .. ++.+. .|..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~--- 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYS--- 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH---
Confidence 3789999998 4 44555666776 999999999999987766521 00 11111 1111
Q ss_pred cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 108 ~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.-...|+|+-. +++.+ +...+++.++-++++|+.++...|.+-
T Consensus 411 --~~~~aDlViEA-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl 453 (737)
T TIGR02441 411 --GFKNADMVIEA-VFEDL-------SLKHKVIKEVEAVVPPHCIIASNTSAL 453 (737)
T ss_pred --HhccCCeehhh-ccccH-------HHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 12457888765 45544 888999999999999999887766443
No 410
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.06 E-value=14 Score=32.62 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=45.8
Q ss_pred CcEEEEccCCchhHHHHHH----cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~----~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~ 120 (237)
.+|+=+|+|. ++..+++ .+. .++.+|.+++.++.+++.. .++.++.+|..+... ..-..+|.|++.
T Consensus 232 ~~iiIiG~G~--~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGN--IGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL---PNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCH--HHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC---CCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 3788888755 4444433 344 8999999999998888764 356788999876432 234578888763
No 411
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=85.98 E-value=9.4 Score=32.61 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=53.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-.|+|. |..+..+++....++++++.+++....+.+.+.. . .++. .+...+... ...+|+|+....
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~-~~~~D~vid~~g---- 253 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA-D--DYLVSSDAAEMQEA-ADSLDYIIDTVP---- 253 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC-c--EEecCCChHHHHHh-cCCCcEEEECCC----
Confidence 3777777755 6666666666444788888888776666554421 1 1111 111111111 235888876321
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+..+.+.|+++|+++...
T Consensus 254 ---------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 254 ---------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ---------chHHHHHHHHHhccCCEEEEEC
Confidence 0235677889999999988765
No 412
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=85.82 E-value=12 Score=31.12 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=53.1
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+||-.|+|. |..+..+++....++++++.+++..+.+++ +. .... .+.... .....+|+|+....
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g----~~~~-~~~~~~--~~~~~~d~vid~~g----- 223 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LG----VETV-LPDEAE--SEGGGFDVVVEATG----- 223 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cC----CcEE-eCcccc--ccCCCCCEEEECCC-----
Confidence 3788877543 444444454433479999999999888887 31 1111 111111 23456999987421
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
....+..+.+.|+++|.++..
T Consensus 224 --------~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 --------SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred --------ChHHHHHHHHHhhcCCEEEEE
Confidence 023567788899999999874
No 413
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=85.81 E-value=9.8 Score=33.02 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=64.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCch----hHHHHHHcC----CCeEEEEeC----CHHHHHHHHHHcCC-----CCCcEEE
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSA----FSEGMVDDG----YEDVVNVDI----SSVVIEAMMKKYSN-----RPQLKYI 99 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~----~~~~~~~~~----~~~~~~vD~----s~~~~~~a~~~~~~-----~~~~~~~ 99 (237)
..++........-+|+|+|.|.|. +...++.+. .-++|+|+. +...++.+.+++.. .-.++|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 444444444433489999999994 333444432 229999999 88888888877631 1134444
Q ss_pred Ec---cccccc--c--ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 100 KM---DVRQMD--E--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 100 ~~---d~~~~~--~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
.. +..++. . ...+..=+|-+...+|++.............+=...+.|+|.-++++
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 42 222221 0 22333333434445677742222223334444456678899855544
No 414
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.75 E-value=4 Score=34.21 Aligned_cols=94 Identities=12% Similarity=0.207 Sum_probs=55.5
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---C---CC--------CcEEEEccccccccccCCC
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---N---RP--------QLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---~---~~--------~~~~~~~d~~~~~~~~~~~ 113 (237)
+|.-||+|. | .+...++..++ +++++|.+++.++.+++... + .. ++.+ ..|..+. -..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----~~~ 79 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA----VSG 79 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH----hcc
Confidence 688889987 3 45555666666 89999999999888776421 0 00 0111 1111111 245
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.|+|+..-. . .......++.++..+++++.+++..+
T Consensus 80 aDlVi~av~-~-------~~~~~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 80 ADLVIEAVP-E-------KLELKRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred CCEEEEecc-C-------cHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 799887522 1 11346678888888777665544333
No 415
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=85.62 E-value=6.3 Score=33.16 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=54.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEeccccce
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~~ 125 (237)
.+||-.|+|. |..+..+++....+++.++.+++.++.+++.- . ..++...-.+... .....+|+++....
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g-~---~~~i~~~~~~~~~~~~~~~~~d~vi~~~g--- 237 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLG-A---HHYIDTSKEDVAEALQELGGAKLILATAP--- 237 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcC-C---cEEecCCCccHHHHHHhcCCCCEEEECCC---
Confidence 3888888654 55555566654448999999988888885431 1 1122111111100 01135888885311
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+..+.+.|+++|.++...
T Consensus 238 ----------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 238 ----------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred ----------chHHHHHHHHHcccCCEEEEEe
Confidence 1236777899999999988765
No 416
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=85.46 E-value=4.9 Score=32.63 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=60.9
Q ss_pred EEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-c--ccCCCccEEEeccccceecc
Q 026558 52 LIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-E--FQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 52 LdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~--~~~~~fD~I~~~~~l~~~~~ 128 (237)
|..=+|+=.++..+.+.. .+.+.+|+.+.-.+..++++....++.+...|..+.. . -+..+=-+|+.+.+++.-
T Consensus 62 l~~YPGSP~ia~~llR~q-Drl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~-- 138 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQ-DRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK-- 138 (245)
T ss_dssp --EEE-HHHHHHHHS-TT-SEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST--
T ss_pred cCcCCCCHHHHHHhCCcc-ceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc--
Confidence 667788877887777775 5999999999999999999987678999999986621 0 134456788888777654
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCcEEEEEEc
Q 026558 129 GSNSRQNATQMLKEVWRVLK--DKGVYILVTY 158 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~--pgG~l~~~~~ 158 (237)
.+..++.+.+..+++ +.|++++...
T Consensus 139 -----~dy~~v~~~l~~a~kR~~~G~~~iWYP 165 (245)
T PF04378_consen 139 -----DDYQRVVDALAKALKRWPTGVYAIWYP 165 (245)
T ss_dssp -----THHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred -----hHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 677777777777776 6788777653
No 417
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=85.45 E-value=3.9 Score=27.50 Aligned_cols=85 Identities=24% Similarity=0.317 Sum_probs=50.4
Q ss_pred EEEEccCC-c-hhHHHHHHcC--CCeEE-EEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 51 ILIVGCGN-S-AFSEGMVDDG--YEDVV-NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 51 iLdlG~G~-G-~~~~~~~~~~--~~~~~-~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
|.=||+|. | .++..+.+.+ ..+++ +.+.+++.++.+.+... +.+...+..+.. ...|+|+..-
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~----~~advvilav---- 69 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----VQATADDNEEAA----QEADVVILAV---- 69 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----TEEESEEHHHHH----HHTSEEEE-S----
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----cccccCChHHhh----ccCCEEEEEE----
Confidence 44455555 2 2223344455 13777 55999999999888863 344433444432 2579998753
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
.+.+..++++++ ..+.++..++
T Consensus 70 ------~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 70 ------KPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp -------GGGHHHHHHHH-HHHHTTSEEE
T ss_pred ------CHHHHHHHHHHH-hhccCCCEEE
Confidence 345668888888 6666666654
No 418
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.40 E-value=2.5 Score=34.71 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=37.1
Q ss_pred CcEEEEccCCchhHHHHHHcC------CCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG------YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD 107 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~------~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~ 107 (237)
..++|+|||.|.++.++++.. ...++.||-...-. .+-.++... +.+.=+..|+.++.
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 489999999999999987753 34889999854222 222222221 24555666776643
No 419
>PRK12829 short chain dehydrogenase; Provisional
Probab=85.38 E-value=14 Score=29.68 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=46.2
Q ss_pred CcEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc----c-----CCCcc
Q 026558 49 QRILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----Q-----TGSFD 115 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----~-----~~~fD 115 (237)
+++|-.|++ |.++..+ +++++ ++++++.++...+...+..... ++.++.+|+.+.... . -+.+|
T Consensus 12 ~~vlItGa~-g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 88 (264)
T PRK12829 12 LRVLVTGGA-SGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAVERFGGLD 88 (264)
T ss_pred CEEEEeCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 389988864 5555544 44565 8999999887776655544321 457788888764321 1 14689
Q ss_pred EEEeccc
Q 026558 116 SVVDKGT 122 (237)
Q Consensus 116 ~I~~~~~ 122 (237)
+|+....
T Consensus 89 ~vi~~ag 95 (264)
T PRK12829 89 VLVNNAG 95 (264)
T ss_pred EEEECCC
Confidence 9988654
No 420
>PRK06196 oxidoreductase; Provisional
Probab=85.36 E-value=16 Score=30.56 Aligned_cols=70 Identities=10% Similarity=0.200 Sum_probs=46.2
Q ss_pred CcEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCcc
Q 026558 49 QRILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++||-.|++ |.++..+ ++.|. ++++++.++...+.+.+.+ ..+.++.+|+.+.... ..+..|
T Consensus 27 k~vlITGas-ggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 27 KTAIVTGGY-SGLGLETTRALAQAGA-HVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRRID 101 (315)
T ss_pred CEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence 378888854 5455444 44565 8999999887766555444 2477888898775321 125789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 102 ~li~nAg~ 109 (315)
T PRK06196 102 ILINNAGV 109 (315)
T ss_pred EEEECCCC
Confidence 99987654
No 421
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.18 E-value=14 Score=30.62 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=57.1
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCH-HHHHHHHHHcCC-CCCcEEEEccccccccc----c-----CCCc
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISS-VVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q-----TGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~-~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~----~-----~~~f 114 (237)
+||-.|++. .++. .+++.|. +++.++.++ ...+...+.+.. ..++.++.+|+.+.... . -+..
T Consensus 48 ~iLItGasg-gIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~i 125 (290)
T PRK06701 48 VALITGGDS-GIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRL 125 (290)
T ss_pred EEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 788888644 3444 4455665 888888764 223333333321 23567888898764311 1 1468
Q ss_pred cEEEeccccceeccC--CCChH-----------HHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCG--SNSRQ-----------NATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~--~~~~~-----------~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+|+.+......... ..+.+ ....+++.+.+.++++|.+++.+
T Consensus 126 D~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 126 DILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 999876543211000 01111 23345566667777778777655
No 422
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=85.17 E-value=9.8 Score=31.95 Aligned_cols=91 Identities=22% Similarity=0.237 Sum_probs=56.2
Q ss_pred cEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-ccc-ccCCCccEEEecccc
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDE-FQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~-~~~~~fD~I~~~~~l 123 (237)
+||-.|+|. |..+..+++....+++++..+++..+.+++... ..++.. +..+ +.. .....+|+++....
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~----~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g- 236 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGA----DDTINVGDEDVAARLRELTDGEGADVVIDATG- 236 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCC----CEEecCcccCHHHHHHHHhCCCCCCEEEECCC-
Confidence 888888754 666666776644589999888888887755321 112111 1111 111 13356899987421
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-...+..+.+.|+++|.++...
T Consensus 237 ------------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 237 ------------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 0235788899999999988654
No 423
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.14 E-value=17 Score=29.32 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=48.2
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc----c-----cCCCccE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE----F-----QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~----~-----~~~~fD~ 116 (237)
++|-.|++.|. +...+++.+. +++.++.++..++.+.+.+.. ..++.++.+|+.+... + .-+..|+
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 90 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVIDI 90 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 78888876542 3344566665 888889988777766655532 2357788899976431 1 1256899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 91 li~~ag~ 97 (265)
T PRK07097 91 LVNNAGI 97 (265)
T ss_pred EEECCCC
Confidence 9987654
No 424
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.05 E-value=6.1 Score=32.86 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=57.9
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-------CCCC-----------cEEEEccccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NRPQ-----------LKYIKMDVRQMDEF 109 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-------~~~~-----------~~~~~~d~~~~~~~ 109 (237)
+|.-||+|. | .+...++..+. +++++|.+++.++.+++++. .... ......+. .
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~-- 79 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL---E-- 79 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH---H--
Confidence 688889886 4 44455666665 99999999999887655431 0000 00111111 1
Q ss_pred cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.-...|+|+..-. ++++....++.++...++++.+++..+
T Consensus 80 ~~~~aD~Vieav~--------e~~~~k~~v~~~l~~~~~~~~il~s~t 119 (295)
T PLN02545 80 ELRDADFIIEAIV--------ESEDLKKKLFSELDRICKPSAILASNT 119 (295)
T ss_pred HhCCCCEEEEcCc--------cCHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1245688887522 234667788999999999987665433
No 425
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=85.05 E-value=16 Score=30.56 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=56.1
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc----cccc-cccccCCCccEEEecc
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQ-MDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~----d~~~-~~~~~~~~fD~I~~~~ 121 (237)
.+||-.|+ |.|..+..+++....++++++.+++..+.+++. .. ..++.. +..+ ......+.+|+|+...
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l-Ga---~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL-GF---DVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CC---CEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 38888884 347777777776545899999999888888653 11 112111 1111 1111234689888631
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ...+..+.++|+++|+++...
T Consensus 216 G--------------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 216 G--------------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred C--------------HHHHHHHHHHhCcCcEEEEec
Confidence 1 124577899999999998754
No 426
>PRK07576 short chain dehydrogenase; Provisional
Probab=85.00 E-value=14 Score=29.85 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=43.7
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
+||-.|. +|.++.. +++.|. .|++++.++..++...+.+. ...++.++.+|+.+.... ..+..|
T Consensus 11 ~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD 88 (264)
T PRK07576 11 NVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPID 88 (264)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 7888875 5555444 444555 89999998877665544432 123567788888764311 124689
Q ss_pred EEEecc
Q 026558 116 SVVDKG 121 (237)
Q Consensus 116 ~I~~~~ 121 (237)
+++.+.
T Consensus 89 ~vi~~a 94 (264)
T PRK07576 89 VLVSGA 94 (264)
T ss_pred EEEECC
Confidence 998764
No 427
>PLN02256 arogenate dehydrogenase
Probab=84.93 E-value=10 Score=31.90 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=48.5
Q ss_pred CcEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|.=+|+|. |.++..+.+.+. +++++|.++. .+.+++ . ++.. ..|..+.. ....|+|+..-.
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~-~----gv~~-~~~~~e~~---~~~aDvVilavp---- 101 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAE-L----GVSF-FRDPDDFC---EEHPDVVLLCTS---- 101 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHH-c----CCee-eCCHHHHh---hCCCCEEEEecC----
Confidence 4888899876 334455555554 8999999863 233332 1 2222 22222221 235799987533
Q ss_pred ccCCCChHHHHHHHHHH-HHhcCCCcEE
Q 026558 127 LCGSNSRQNATQMLKEV-WRVLKDKGVY 153 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~-~~~L~pgG~l 153 (237)
......+++++ ...++++.++
T Consensus 102 ------~~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 102 ------ILSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred ------HHHHHHHHHhhhhhccCCCCEE
Confidence 24557777877 5667777644
No 428
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=84.91 E-value=15 Score=31.17 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=54.1
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc-------cccc-ccCCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-------QMDE-FQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-------~~~~-~~~~~fD~I~ 118 (237)
.+||-.|+|. |..+..+++.... ++++++.+++..+.+++. .. ..++..+-. .+.. .....+|+|+
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~---~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vi 254 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF-GA---DATIDIDELPDPQRRAIVRDITGGRGADVVI 254 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC---CeEEcCcccccHHHHHHHHHHhCCCCCcEEE
Confidence 3777777654 4555556665444 899999988887777543 11 111111110 0110 1234699998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....- ...+....+.|+++|+++...
T Consensus 255 d~~g~-------------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 255 EASGH-------------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred ECCCC-------------hHHHHHHHHHhccCCEEEEEc
Confidence 64210 235677889999999998764
No 429
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.90 E-value=14 Score=31.20 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=54.5
Q ss_pred cEEEEccCC-chhHHHHHHcCCCe-EEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-------ccc-ccCCCccEEEe
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYED-VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-------MDE-FQTGSFDSVVD 119 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~-~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-------~~~-~~~~~fD~I~~ 119 (237)
+||-.|+|. |..+..+++....+ ++.++.+++..+.+++.. . . .++..+-.. +.. .....+|+|+.
T Consensus 165 ~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g-~-~--~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld 240 (343)
T cd05285 165 TVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELG-A-T--HTVNVRTEDTPESAEKIAELLGGKGPDVVIE 240 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC-C-c--EEeccccccchhHHHHHHHHhCCCCCCEEEE
Confidence 777777654 55666666654335 899988888887775531 1 1 111111111 111 23456999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...- ...+..+.+.|+++|+++...
T Consensus 241 ~~g~-------------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 241 CTGA-------------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence 4221 225778899999999988654
No 430
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.75 E-value=6.8 Score=32.78 Aligned_cols=89 Identities=13% Similarity=0.155 Sum_probs=52.8
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-+|+|. |......+.....+++.+|.++...+.++.. ...+. +..++. ..-..+|+|+..-+.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~-----G~~~~--~~~~l~-~~l~~aDiVI~t~p~---- 220 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEM-----GLSPF--HLSELA-EEVGKIDIIFNTIPA---- 220 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-----CCeee--cHHHHH-HHhCCCCEEEECCCh----
Confidence 4899999876 4433333433334999999998776666543 22322 122222 112468999985221
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.-+-+++.+.++||+.++-..+
T Consensus 221 ---------~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 221 ---------LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred ---------hhhhHHHHHcCCCCcEEEEEcc
Confidence 1134567788999887765543
No 431
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.73 E-value=9.3 Score=33.32 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=63.2
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----------cc---cc-cCC
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----------MD---EF-QTG 112 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----------~~---~~-~~~ 112 (237)
.+|--+|-|. | -++..++++|+ .++|+||++..++....--. .+..-+... +. ++ .-.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~~-----~i~e~~~~~~v~~~v~~g~lraTtd~~~l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGES-----YIEEPDLDEVVKEAVESGKLRATTDPEELK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCcc-----eeecCcHHHHHHHHHhcCCceEecChhhcc
Confidence 4777888777 3 23345567777 99999999998887654321 111111110 00 00 112
Q ss_pred CccEEEec-cc-cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 113 SFDSVVDK-GT-LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 113 ~fD~I~~~-~~-l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
..|+++.. .+ +.. ...++.....+..+.+.+.|++|-.+++.+-..|.
T Consensus 84 ~~dv~iI~VPTPl~~--~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG 133 (436)
T COG0677 84 ECDVFIICVPTPLKK--YREPDLSYVESAARSIAPVLKKGDLVILESTTPPG 133 (436)
T ss_pred cCCEEEEEecCCcCC--CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 45665543 11 111 12245677888999999999999888887655554
No 432
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=84.27 E-value=20 Score=31.24 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=56.6
Q ss_pred cEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CC---------CcEEEEccccccccccCCCccEE
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RP---------QLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~---------~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
+|--+|+|. |.-+..+...|+ +|+++|++++.++.+++.... .+ +.++.. + .+.. ......|+|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~-~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~-t-~~~~-~~~~~ad~v 77 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNH-EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNA-T-LDKN-EAYRDADYV 77 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEE-e-cchh-hhhcCCCEE
Confidence 355677775 533333333465 999999999999988875421 01 111111 0 0010 012456888
Q ss_pred Eeccccceec--cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 118 VDKGTLDSLL--CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 118 ~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
+..-+-. +- ....+.....+.++.+.+ +++|..++..+-.+|.
T Consensus 78 ii~Vpt~-~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg 122 (388)
T PRK15057 78 IIATPTD-YDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG 122 (388)
T ss_pred EEeCCCC-CccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence 7752211 10 001123566777788877 6777766665544444
No 433
>PRK05693 short chain dehydrogenase; Provisional
Probab=84.15 E-value=17 Score=29.52 Aligned_cols=67 Identities=21% Similarity=0.451 Sum_probs=42.2
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
++|-.|+ +|.++..+ ++.|. ++++++.++..++..... ++.++.+|+.+.... ..+..|+
T Consensus 3 ~vlItGa-sggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~-----~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 75 (274)
T PRK05693 3 VVLITGC-SSGIGRALADAFKAAGY-EVWATARKAEDVEALAAA-----GFTAVQLDVNDGAALARLAEELEAEHGGLDV 75 (274)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHC-----CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 5777775 44444444 44555 899999988766554322 456777888664311 1257899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
|+.+...
T Consensus 76 vi~~ag~ 82 (274)
T PRK05693 76 LINNAGY 82 (274)
T ss_pred EEECCCC
Confidence 9987654
No 434
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=84.09 E-value=4.7 Score=32.64 Aligned_cols=88 Identities=17% Similarity=0.405 Sum_probs=53.9
Q ss_pred cEEEEccCC-chhHHHH-HHcCCCeEEEEeCCHHHHHH-------------------HHHHcCC-CCCcEEEEcccc---
Q 026558 50 RILIVGCGN-SAFSEGM-VDDGYEDVVNVDISSVVIEA-------------------MMKKYSN-RPQLKYIKMDVR--- 104 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~-~~~~~~~~~~vD~s~~~~~~-------------------a~~~~~~-~~~~~~~~~d~~--- 104 (237)
+|+-+|+|- |++...+ ++.|..+++.+|.+.-.+.. +++++.. +|++++...+..
T Consensus 32 ~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~t~ 111 (263)
T COG1179 32 HVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFITE 111 (263)
T ss_pred cEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhhCH
Confidence 788888865 8887755 55566689999886544333 3344332 366666555442
Q ss_pred -ccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHh
Q 026558 105 -QMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRV 146 (237)
Q Consensus 105 -~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 146 (237)
++..+-...||+|+. .++.+ .-...++..+.+.
T Consensus 112 en~~~~~~~~~DyvID--aiD~v-------~~Kv~Li~~c~~~ 145 (263)
T COG1179 112 ENLEDLLSKGFDYVID--AIDSV-------RAKVALIAYCRRN 145 (263)
T ss_pred hHHHHHhcCCCCEEEE--chhhh-------HHHHHHHHHHHHc
Confidence 222344568999998 56655 5555555555544
No 435
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=83.90 E-value=12 Score=32.10 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=54.8
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc-----ccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-.|+|. |..+..+++.... ++++++.+++.++.+++.- . ..++..+ ..+ +.....+.+|+++..
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~G-a---~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~ 264 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFG-V---TEFVNPKDHDKPVQEVIAEMTGGGVDYSFEC 264 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcC-C---ceEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 3888888754 5555556665433 7999999999888886531 1 1122111 100 111123368988863
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
.. ....+..+.+.+++| |++++...
T Consensus 265 ~G-------------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 265 TG-------------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CC-------------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 21 123566678889996 98887653
No 436
>PRK06181 short chain dehydrogenase; Provisional
Probab=83.90 E-value=11 Score=30.22 Aligned_cols=72 Identities=13% Similarity=0.300 Sum_probs=45.4
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
+||-.|+ +|.++..+ ++.+. ++++++.++...+.+.+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 3 ~vlVtGa-sg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 3 VVIITGA-SEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred EEEEecC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 5777774 45555544 44555 899999998766655544432 23577888898764321 114689
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+|+.....
T Consensus 81 ~vi~~ag~ 88 (263)
T PRK06181 81 ILVNNAGI 88 (263)
T ss_pred EEEECCCc
Confidence 99987543
No 437
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.89 E-value=8.2 Score=36.57 Aligned_cols=97 Identities=16% Similarity=0.252 Sum_probs=66.1
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------C------------CCcEEEEccccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------R------------PQLKYIKMDVRQMD 107 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~------------~~~~~~~~d~~~~~ 107 (237)
.+|.-||+|+ | .++..++..|+ .|+.+|.+++.++.+.+++.. . .++.+. .|. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~---~ 388 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY---A 388 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH---H
Confidence 3799999999 4 44455667776 999999999999887765421 0 012211 111 1
Q ss_pred cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 108 ~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.-...|+|+-. +.+.+ +..++++.++-++++|+.++...|.+-
T Consensus 389 --~~~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl 431 (715)
T PRK11730 389 --GFERVDVVVEA-VVENP-------KVKAAVLAEVEQKVREDTILASNTSTI 431 (715)
T ss_pred --HhcCCCEEEec-ccCcH-------HHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 12467888875 44444 888899999999999998887666443
No 438
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.84 E-value=10 Score=31.49 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=52.4
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEE-EEccc-cccccccCCCccEEEecccc
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKY-IKMDV-RQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~-~~~d~-~~~~~~~~~~fD~I~~~~~l 123 (237)
+|+-+|+|. |. ++..+++.++ +|+.++. ++.++..++.--. ...... ..... .+.. .....+|+|+..-.-
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vilavk~ 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPE-ELTGPFDLVILAVKA 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHH-HccCCCCEEEEEecc
Confidence 577888887 33 4455666666 8999998 6666665543100 000011 01001 1111 112578988774321
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+...+++.+...+.++..++...
T Consensus 79 ----------~~~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 79 ----------YQLDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred ----------cCHHHHHHHHHhhcCCCCEEEEee
Confidence 345777888888888877665543
No 439
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=83.73 E-value=8.7 Score=28.16 Aligned_cols=91 Identities=22% Similarity=0.269 Sum_probs=53.7
Q ss_pred EEEEccCC-chhH-HHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc-------ccccc--cccCCCccEEEe
Q 026558 51 ILIVGCGN-SAFS-EGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-------VRQMD--EFQTGSFDSVVD 119 (237)
Q Consensus 51 iLdlG~G~-G~~~-~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d-------~~~~~--~~~~~~fD~I~~ 119 (237)
|+-+|+|. |.+. ..+.+.+. +++.+.-++ .++..+++- +.+...+ ..... ......+|+|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv 73 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQG-----LTITGPDGDETVQPPIVISAPSADAGPYDLVIV 73 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHC-----EEEEETTEEEEEEEEEEESSHGHHHSTESEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhhee-----EEEEecccceecccccccCcchhccCCCcEEEE
Confidence 45677766 4433 33445455 999999887 556555442 1222111 00011 124678999998
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.--- .+....++.+.+.+.++..+++.-.
T Consensus 74 ~vKa----------~~~~~~l~~l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 74 AVKA----------YQLEQALQSLKPYLDPNTTIVSLQN 102 (151)
T ss_dssp -SSG----------GGHHHHHHHHCTGEETTEEEEEESS
T ss_pred Eecc----------cchHHHHHHHhhccCCCcEEEEEeC
Confidence 5321 3557789999999999987766553
No 440
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=83.60 E-value=5.8 Score=31.73 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=45.7
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHH-HcCCCCCcEEEEcccccccc---ccCCCccEEEec
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMK-KYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDK 120 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~-~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~ 120 (237)
+++=+|||. | .++..+.+.++ .++.+|.+++.++.... . ..+..+++|..+... ..-..+|+++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~----~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADE----LDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhh----cceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 567788877 3 34445556666 99999999988877333 3 256888899877542 234678988874
No 441
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=83.35 E-value=7 Score=33.80 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=52.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHH-HHHHHHHcCCCCCcEEEE-ccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVV-IEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~-~~~a~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+||-.|+|. |..+..+++....++++++.+++. .+.+++ +.. ..++. .+........ ..+|+|+....
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~-lGa---~~~i~~~~~~~v~~~~-~~~D~vid~~G--- 251 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-LGA---DSFLVTTDSQKMKEAV-GTMDFIIDTVS--- 251 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh-CCC---cEEEcCcCHHHHHHhh-CCCcEEEECCC---
Confidence 3788888865 666666666644588999887654 444433 211 11111 1111111111 35888886321
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....+..+.+.++++|.++....
T Consensus 252 ----------~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 ----------AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ----------cHHHHHHHHHhhcCCCEEEEEcc
Confidence 12356778889999999987653
No 442
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=83.25 E-value=19 Score=30.55 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=45.5
Q ss_pred cEEEEccCCchhHHHHHH----cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc--CCCccEEEecccc
Q 026558 50 RILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ--TGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~----~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~--~~~fD~I~~~~~l 123 (237)
+||-.| |+|.++..+++ .++ +|++++.++...+.....+....++.++.+|+.+...+. -..+|+|+.....
T Consensus 12 ~vLVtG-~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~ 89 (353)
T PLN02896 12 TYCVTG-ATGYIGSWLVKLLLQRGY-TVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVAAS 89 (353)
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECCcc
Confidence 899888 57766666554 455 888888776544433333322246788899987653221 1357988876654
No 443
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.23 E-value=22 Score=30.99 Aligned_cols=103 Identities=12% Similarity=0.117 Sum_probs=57.1
Q ss_pred cEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-cccc-cCCCccEEEeccc
Q 026558 50 RILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEF-QTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~~-~~~~fD~I~~~~~ 122 (237)
+||-.|+|. |..+..+++. |...++.+|.++..++.+++.-. . .+... +..+ +... ....+|+|+....
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga---~-~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC---E-TVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC---e-EEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 666677765 5566666665 33346677888888888887421 1 12111 1111 1111 2346899987432
Q ss_pred cce---eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 123 LDS---LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~---~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
-.. .+- .........++++.+.+++||++++.-.
T Consensus 264 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 264 FEARGHGHD--GKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred Ccccccccc--ccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 110 000 0001123478889999999999988654
No 444
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=83.22 E-value=4.9 Score=35.76 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=49.6
Q ss_pred CcEEEEccCC-chhHHHHH-HcCCCeEE------EEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMV-DDGYEDVV------NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~-~~~~~~~~------~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
++|+-||||+ |.....-+ ..|. .++ ++|......+.|.+. .+ ...+..+. -...|+|+.-
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGv-nVvvglr~~~id~~~~s~~kA~~d-----GF--~v~~~~Ea----~~~ADvVviL 104 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGL-DISYALRKEAIAEKRASWRKATEN-----GF--KVGTYEEL----IPQADLVINL 104 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccc-eeEEeccccccccccchHHHHHhc-----CC--ccCCHHHH----HHhCCEEEEc
Confidence 3899999988 54111001 1122 444 444445555555443 22 22233332 2567999874
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+. .....+.+++...|+||..|.+..
T Consensus 105 lPD----------t~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 105 TPD----------KQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred CCh----------HHHHHHHHHHHhhCCCCCEEEecC
Confidence 321 235666799999999999998864
No 445
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=83.15 E-value=5 Score=35.88 Aligned_cols=88 Identities=11% Similarity=0.122 Sum_probs=53.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|+-+|+|. |......+.....+|+.+|.++.....+... .+.+. ++.+. -...|+|++.-.-
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~-----G~~~~--~leel----l~~ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME-----GYQVV--TLEDV----VETADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc-----Cceec--cHHHH----HhcCCEEEECCCc----
Confidence 3899999887 4443333333334899999987655443331 22222 23332 2468999875211
Q ss_pred cCCCChHHHHHHH-HHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQML-KEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l-~~~~~~L~pgG~l~~~~~~~ 160 (237)
..++ .+.+..||||++++-.....
T Consensus 320 ---------~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 ---------KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ---------ccccCHHHHhccCCCcEEEEcCCCc
Confidence 2244 47889999999998876544
No 446
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=83.14 E-value=17 Score=30.35 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=52.5
Q ss_pred cEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
+||-.|||. |..+..+++....+++.++.+++..+.+++ +. +.... +.... ....+|+++....
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g----~~~~~-~~~~~---~~~~vD~vi~~~~------ 234 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LG----ADWAG-DSDDL---PPEPLDAAIIFAP------ 234 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hC----CcEEe-ccCcc---CCCcccEEEEcCC------
Confidence 677777654 444444555544589999988887777744 31 21111 11111 2345888875311
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....++.+.+.|+++|+++...
T Consensus 235 -------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 -------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -------cHHHHHHHHHHhhcCCEEEEEc
Confidence 1246888999999999998754
No 447
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=83.08 E-value=20 Score=30.35 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=54.6
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEE---Eccccc-cccc-cCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYI---KMDVRQ-MDEF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~---~~d~~~-~~~~-~~~~fD~I~~~~ 121 (237)
.+||-.|+|. |..+..+++.... .+++++.+++..+.+++.-. . .++ ..+..+ +... ....+|+|+...
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga--~--~~i~~~~~~~~~~l~~~~~~~~~d~vid~~ 249 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA--T--IVLDPTEVDVVAEVRKLTGGGGVDVSFDCA 249 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC--C--EEECCCccCHHHHHHHHhCCCCCCEEEECC
Confidence 3777777643 4455555555434 78999999988888865311 1 111 111111 1111 234599998742
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. ...++.+.+.|+++|.++....
T Consensus 250 g~-------------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 250 GV-------------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CC-------------HHHHHHHHHhccCCCEEEEEcc
Confidence 11 2356788899999999887653
No 448
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=82.69 E-value=15 Score=31.47 Aligned_cols=97 Identities=14% Similarity=0.242 Sum_probs=61.5
Q ss_pred cEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc----ccccc-ccccCCCccEEEeccc
Q 026558 50 RILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQM-DEFQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~----d~~~~-~~~~~~~fD~I~~~~~ 122 (237)
+|.-+|||. |-..+.-+.. +..+++++|+++.-+++|++--.. .++.. |+.+. ....++..|.+|..
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT----~~vn~~~~~~vv~~i~~~T~gG~d~~~e~-- 261 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT----HFVNPKEVDDVVEAIVELTDGGADYAFEC-- 261 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCc----eeecchhhhhHHHHHHHhcCCCCCEEEEc--
Confidence 788888866 5555544443 455999999999999999987432 22222 22211 11334577877552
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchh
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 163 (237)
... ...++..+..+.++|..++.-...+..
T Consensus 262 ~G~-----------~~~~~~al~~~~~~G~~v~iGv~~~~~ 291 (366)
T COG1062 262 VGN-----------VEVMRQALEATHRGGTSVIIGVAGAGQ 291 (366)
T ss_pred cCC-----------HHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 221 236777888888899998877655543
No 449
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=82.67 E-value=6.6 Score=33.34 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=59.3
Q ss_pred CcEEEEccC--CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-cc-cCCCccEEEeccccc
Q 026558 49 QRILIVGCG--NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-EF-QTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G--~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~-~~~~fD~I~~~~~l~ 124 (237)
.+||-.|+. -|.+++.+++.....++++--+++-.+.+++.... .-+.+...|+.+.- .. ....+|+|+..-.
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd-~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG-- 220 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD-HVINYREEDFVEQVRELTGGKGVDVVLDTVG-- 220 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC-EEEcCCcccHHHHHHHHcCCCCceEEEECCC--
Confidence 389988853 36777788877533777777777777766655321 11222233332211 12 2346999988422
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
...+....+.|+++|+++..-..
T Consensus 221 ------------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 221 ------------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred ------------HHHHHHHHHHhccCCEEEEEecC
Confidence 44677788999999999886643
No 450
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.58 E-value=6.5 Score=34.18 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=31.5
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~ 90 (237)
+.++. +||-|.+|.......+. .++.+|++||+||..+..++=+.
T Consensus 33 i~~~d-~vl~ItSaG~N~L~yL~-~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDD-RVLTITSAGCNALDYLL-AGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCC-eEEEEccCCchHHHHHh-cCCceEEEEeCCHHHHHHHHHHH
Confidence 34444 89999765555555544 44569999999999988776554
No 451
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.44 E-value=14 Score=31.02 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=54.9
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---C------CcEEEEccccccccccCCCccEEE
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---P------QLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~------~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
+|.=+|+|. | .++..+++.++ .++.+|.++..++..++..... + ++.. ..|..+. ....|+|+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~D~vi 76 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA----LADADLIL 76 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH----HhCCCEEE
Confidence 577788776 3 34445556666 8999999988887776652110 0 1111 1111111 24579888
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..-. ......+++.+...++++.+++...
T Consensus 77 ~~v~----------~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 77 VAVP----------SQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred EeCC----------HHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 7432 2456777888888888887666543
No 452
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.43 E-value=28 Score=29.15 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=29.2
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKK 89 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~ 89 (237)
+|.-+|+|. | .++..+++.|+ +|+++|.+++.++.++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~~~~~~~~~ 44 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPAAAAAAPAY 44 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHHHHHHHHHH
Confidence 578888876 3 45556677776 999999999888876543
No 453
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=82.22 E-value=8.5 Score=32.36 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=54.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCe-EEEEeCCHHHHHHHHHHcCCCCCcEEEEcc---cccccc-ccCCCccEEEeccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYED-VVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQMDE-FQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~-~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d---~~~~~~-~~~~~fD~I~~~~~ 122 (237)
.+||-.|+|. |..+..+++..... +++++-++...+.+++.- . ..++..+ ...+.. .....+|+|+....
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g-~---~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g 236 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELG-A---DDTINPKEEDVEKVRELTEGRGADLVIEAAG 236 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-C---CEEecCccccHHHHHHHhCCCCCCEEEECCC
Confidence 3788888655 55666666654345 999998888887775431 1 1222111 111111 12345999986411
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+..+.++|+++|+++...
T Consensus 237 -------------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 237 -------------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred -------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1235677899999999987764
No 454
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.15 E-value=9.7 Score=36.06 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=65.8
Q ss_pred CcEEEEccCC-c-hhHHHHH-HcCCCeEEEEeCCHHHHHHHHHHcCC-------C------------CCcEEEEcccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMV-DDGYEDVVNVDISSVVIEAMMKKYSN-------R------------PQLKYIKMDVRQM 106 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~-~~~~~~~~~vD~s~~~~~~a~~~~~~-------~------------~~~~~~~~d~~~~ 106 (237)
.+|.-||+|+ | .++..++ ..|. .|+.+|.+++.++.+.+++.. . .++++. .|.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~--- 384 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY--- 384 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh---
Confidence 3799999998 4 3444455 5566 999999999999887655421 0 012221 111
Q ss_pred ccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 107 DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 107 ~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
. .-...|+|+-. +.+.+ +-.++++.++-++++|+.++...|.+-+
T Consensus 385 ~--~~~~aDlViEa-v~E~~-------~~K~~v~~~le~~~~~~~ilasnTS~l~ 429 (708)
T PRK11154 385 R--GFKHADVVIEA-VFEDL-------ALKQQMVAEVEQNCAPHTIFASNTSSLP 429 (708)
T ss_pred H--HhccCCEEeec-ccccH-------HHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 1 12457888875 44444 7888999999999999988877664433
No 455
>PRK07454 short chain dehydrogenase; Provisional
Probab=82.15 E-value=23 Score=27.98 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=46.7
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc----c-----CCCcc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q-----TGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~----~-----~~~fD 115 (237)
++|-.|+ +|.++..+ ++++. +|++++.++...+...+.... ..++.++.+|+.+.... . -+..|
T Consensus 8 ~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (241)
T PRK07454 8 RALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPD 85 (241)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 7888885 55555444 45565 899999988766655544432 23677889999765321 1 24689
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 86 ~lv~~ag~ 93 (241)
T PRK07454 86 VLINNAGM 93 (241)
T ss_pred EEEECCCc
Confidence 99987643
No 456
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=82.12 E-value=3.4 Score=37.39 Aligned_cols=93 Identities=12% Similarity=0.248 Sum_probs=59.5
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---------CC----------CCcEEEEcccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---------NR----------PQLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---------~~----------~~~~~~~~d~~~~~~ 108 (237)
+|--||+|+ | .+...++..|+ .|+..|.+++.++.+.+++. +. .++.+. .|...
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~--- 81 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLHA--- 81 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHHH---
Confidence 688899987 4 44455667776 99999999999987755431 10 012221 12211
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+ ...|+|+.. +.+.+ +....++.++...++++.++...|
T Consensus 82 l--~~aDlVIEa-v~E~~-------~vK~~vf~~l~~~~~~~~IlasnT 120 (503)
T TIGR02279 82 L--ADAGLVIEA-IVENL-------EVKKALFAQLEELCPADTIIASNT 120 (503)
T ss_pred h--CCCCEEEEc-CcCcH-------HHHHHHHHHHHhhCCCCeEEEECC
Confidence 2 367988875 33333 667778888888888887655444
No 457
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=82.06 E-value=6.8 Score=35.68 Aligned_cols=77 Identities=14% Similarity=0.275 Sum_probs=60.0
Q ss_pred cEEEEccCCchhHHHHHHc----CCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccccc----ccCCCccEEE
Q 026558 50 RILIVGCGNSAFSEGMVDD----GYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDE----FQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~----~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~----~~~~~fD~I~ 118 (237)
+||-=| |+|+++..++++ +..+++.+|.++..+......+.. ...+.+..+|+.+... +.+-+.|+|+
T Consensus 252 ~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~Vf 330 (588)
T COG1086 252 TVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVF 330 (588)
T ss_pred EEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEE
Confidence 677666 788888877664 466999999999998888877754 2577899999988542 4566899999
Q ss_pred eccccceec
Q 026558 119 DKGTLDSLL 127 (237)
Q Consensus 119 ~~~~l~~~~ 127 (237)
-...+-|++
T Consensus 331 HAAA~KHVP 339 (588)
T COG1086 331 HAAALKHVP 339 (588)
T ss_pred EhhhhccCc
Confidence 998888875
No 458
>PRK07024 short chain dehydrogenase; Provisional
Probab=82.01 E-value=8.1 Score=31.09 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=47.4
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
+||-.|+ +|.++.. +++.|. +++.++.+++.++...+......++.++.+|+.+.... ..+..|+
T Consensus 4 ~vlItGa-s~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~ 81 (257)
T PRK07024 4 KVFITGA-SSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV 81 (257)
T ss_pred EEEEEcC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 6777775 4444444 445565 89999999887776666553323678889999764311 1245899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 82 lv~~ag~ 88 (257)
T PRK07024 82 VIANAGI 88 (257)
T ss_pred EEECCCc
Confidence 9987654
No 459
>PRK07109 short chain dehydrogenase; Provisional
Probab=81.93 E-value=10 Score=32.22 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=46.9
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
.||-.|++. .++.. +++.|. +++.++.++..++...+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 10 ~vlITGas~-gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD 87 (334)
T PRK07109 10 VVVITGASA-GVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPID 87 (334)
T ss_pred EEEEECCCC-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCC
Confidence 678888544 44443 455665 899999998877766655532 23677888898764321 124789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 88 ~lInnAg~ 95 (334)
T PRK07109 88 TWVNNAMV 95 (334)
T ss_pred EEEECCCc
Confidence 99887643
No 460
>PRK07774 short chain dehydrogenase; Provisional
Probab=81.68 E-value=20 Score=28.46 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=45.1
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|-.| |+|.++..++ +.+. ++++++.++...+...+.+.. ..++.++..|+.+.... .-+..|
T Consensus 8 ~vlItG-asg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 85 (250)
T PRK07774 8 VAIVTG-AAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGID 85 (250)
T ss_pred EEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 688777 4555555544 4555 899999987666555444321 23566788888765321 114689
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+|+.+...
T Consensus 86 ~vi~~ag~ 93 (250)
T PRK07774 86 YLVNNAAI 93 (250)
T ss_pred EEEECCCC
Confidence 99987653
No 461
>PRK10083 putative oxidoreductase; Provisional
Probab=81.68 E-value=9 Score=32.15 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=53.2
Q ss_pred cEEEEccCC-chhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-cccccCCCccEEEeccccce
Q 026558 50 RILIVGCGN-SAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~I~~~~~l~~ 125 (237)
+||-.|+|. |..+..+++. |...+++++.+++..+.+++.-.. .-+.....+... +. -....+|+|+....
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~-~~g~~~d~vid~~g--- 237 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGAD-WVINNAQEPLGEALE-EKGIKPTLIIDAAC--- 237 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCc-EEecCccccHHHHHh-cCCCCCCEEEECCC---
Confidence 788888654 5555566662 544688899999888887764211 000011111111 11 01123457765311
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....+..+.+.|+++|+++....
T Consensus 238 ----------~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 238 ----------HPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ----------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 02357778899999999987653
No 462
>PRK08177 short chain dehydrogenase; Provisional
Probab=81.38 E-value=22 Score=27.88 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=42.0
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-------ccCCCccEEE
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-------FQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-------~~~~~fD~I~ 118 (237)
+||-.|+ +|.++. .+++.|. ++++++.++...+.+++. .++.+..+|+.+... +..+.+|+|+
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~----~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi 76 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQAL----PGVHIEKLDMNDPASLDQLLQRLQGQRFDLLF 76 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhc----cccceEEcCCCCHHHHHHHHHHhhcCCCCEEE
Confidence 5777775 454444 4455565 899999887655544332 356777788866431 2235799999
Q ss_pred eccc
Q 026558 119 DKGT 122 (237)
Q Consensus 119 ~~~~ 122 (237)
.+..
T Consensus 77 ~~ag 80 (225)
T PRK08177 77 VNAG 80 (225)
T ss_pred EcCc
Confidence 8754
No 463
>PRK06182 short chain dehydrogenase; Validated
Probab=81.29 E-value=18 Score=29.41 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=43.4
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
.||-.|+ +|.++..+ ++.|+ ++++++.++..++.... .++.++.+|+.+.... ..+..|+
T Consensus 5 ~vlItGa-sggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 5 VALVTGA-SSGIGKATARRLAAQGY-TVYGAARRVDKMEDLAS-----LGVHPLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred EEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 6887885 44445444 44555 89999988876654432 2477888898764321 1247899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 78 li~~ag~ 84 (273)
T PRK06182 78 LVNNAGY 84 (273)
T ss_pred EEECCCc
Confidence 9987654
No 464
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=81.28 E-value=10 Score=28.32 Aligned_cols=92 Identities=22% Similarity=0.270 Sum_probs=55.0
Q ss_pred EEEEccCCchhH--HHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEE-----EEccccccccccCCCccEEEec
Q 026558 51 ILIVGCGNSAFS--EGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKY-----IKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 51 iLdlG~G~G~~~--~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~-----~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
|.-+|+|.+..+ ..++.+++ +|+....+++.++..++.-.+ .+.+.+ ...|..+. -...|+|+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a----~~~ad~Iiia 76 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEA----LEDADIIIIA 76 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHH----HTT-SEEEE-
T ss_pred EEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHH----hCcccEEEec
Confidence 566777775433 23455665 999999999888887776531 122111 22233222 2456888875
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-+ ....+.+++++...++++-.++..+
T Consensus 77 vP----------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 77 VP----------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp S-----------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cc----------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 33 2456889999999998777766643
No 465
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=81.01 E-value=27 Score=29.29 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=52.2
Q ss_pred cEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
+||-.|||. |..+..+++....+++.++.+++..+.+++ +.. . .++...-........+.+|+|+....-
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~-~--~vi~~~~~~~~~~~~~~~d~v~~~~g~----- 242 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK-LGA-D--EFIATKDPEAMKKAAGSLDLIIDTVSA----- 242 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC-c--EEecCcchhhhhhccCCceEEEECCCC-----
Confidence 666677644 555555555544489999999888888754 311 1 111111011100113568888853211
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+..+.+.|+++|.++...
T Consensus 243 --------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 243 --------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred --------cchHHHHHHHhcCCCEEEEEe
Confidence 124677889999999988764
No 466
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.00 E-value=16 Score=30.93 Aligned_cols=75 Identities=15% Similarity=0.303 Sum_probs=41.1
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHH-----------------------HHHHHcCCCCCcEEEEccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIE-----------------------AMMKKYSNRPQLKYIKMDV 103 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~-----------------------~a~~~~~~~~~~~~~~~d~ 103 (237)
.+||-||+|. | .++..++-.|+.++..+|++.--+. ...++..+ ..+.++..++
T Consensus 41 ~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~-~~v~~h~~kI 119 (422)
T KOG2015|consen 41 CKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPG-CVVVPHRQKI 119 (422)
T ss_pred CcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCC-cEEeeeecch
Confidence 3899998864 3 3334444445556666666432222 22222211 1345667777
Q ss_pred cccccccCCCccEEEecccccee
Q 026558 104 RQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 104 ~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+.+.--=.+||+|++ .|+.+
T Consensus 120 qd~~~~FYk~F~~iic--GLDsI 140 (422)
T KOG2015|consen 120 QDKPISFYKRFDLIIC--GLDSI 140 (422)
T ss_pred hcCCHHHHhhhceEEe--cccch
Confidence 7765211357999999 56666
No 467
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=80.98 E-value=17 Score=30.20 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=54.9
Q ss_pred CcEEEEcc-CC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccc--cccccccCCCccEEEecccc
Q 026558 49 QRILIVGC-GN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDV--RQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~-G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~--~~~~~~~~~~fD~I~~~~~l 123 (237)
.+||-.|+ |. |..+..+++....+++.++.+++..+.+++.-. . .+.. .+. ..........+|+|+...
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~--~--~v~~~~~~~~~~~~~~~~~~~d~vld~~-- 221 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGA--K--EVIPREELQEESIKPLEKQRWAGAVDPV-- 221 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCC--C--EEEcchhHHHHHHHhhccCCcCEEEECC--
Confidence 37888886 32 555566666544589999999988888854311 1 1111 111 111112234688887531
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. ...+..+.+.|+++|+++....
T Consensus 222 ----------g--~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 222 ----------G--GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred ----------c--HHHHHHHHHHhhcCCEEEEEee
Confidence 1 1356788999999999987753
No 468
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.97 E-value=15 Score=32.37 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=55.1
Q ss_pred cEEEEccCCchhHHHHHH----cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~----~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~ 122 (237)
+|+-+|+ |..+..+++ .+. .++.+|.+++.++.+++.. .+.++.+|..+... ..-..+|.|++...
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~----~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRL----DVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhc----CEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 4666666 555555544 344 8999999999888777642 56788888876432 22357888877421
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.......+..+.+.+.|.-.+++..
T Consensus 75 ----------~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 75 ----------SDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred ----------ChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 1233444555566664554444443
No 469
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=80.82 E-value=3.6 Score=37.22 Aligned_cols=94 Identities=13% Similarity=0.229 Sum_probs=61.2
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEccccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMD 107 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~ 107 (237)
.+|--||+|+ | .++..++..|+ .|+..|.+++.++.+.+++.. .. ++.+. .|...
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~-- 83 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALAD-- 83 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 3788899987 4 45556677777 999999999999987544420 01 12221 12211
Q ss_pred cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 108 ~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+ ...|+|+.. +.+.. +....++.++.++++++.++...+
T Consensus 84 -~--~~aDlViEa-v~E~~-------~vK~~vf~~l~~~~~~~ailasnt 122 (507)
T PRK08268 84 -L--ADCDLVVEA-IVERL-------DVKQALFAQLEAIVSPDCILATNT 122 (507)
T ss_pred -h--CCCCEEEEc-CcccH-------HHHHHHHHHHHhhCCCCcEEEECC
Confidence 2 367999875 33333 667778888888888887775444
No 470
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=80.53 E-value=29 Score=30.39 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=56.0
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-------------CCcEEEEccccccccccCC
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-------------PQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-------------~~~~~~~~d~~~~~~~~~~ 112 (237)
+|--+|+|. | ..+..+++.|+ +|+++|.++..++..++.... . .++.+ ..|..+. -.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~-~~~~~~~----~~ 75 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA-TTDYEDA----IR 75 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE-ECCHHHH----Hh
Confidence 466688886 3 34445566777 899999999888776542210 0 01111 1111111 24
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..|+|+..-.-..-..+..+.......++.+...+++|..++..+
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 578887743211100011122456777788888888887666544
No 471
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=80.18 E-value=15 Score=33.05 Aligned_cols=96 Identities=10% Similarity=0.111 Sum_probs=57.7
Q ss_pred cEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+|--||.|. +.++..++++|+ +|++.|.+++.++...+.... ..++. ...+..++. -.-...|+|+..-+
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~i~-~~~s~~e~v-~~l~~~d~Iil~v~---- 75 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAKEGNTRVK-GYHTLEELV-NSLKKPRKVILLIK---- 75 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhhhcCCcce-ecCCHHHHH-hcCCCCCEEEEEeC----
Confidence 456677776 355666777887 999999999998877664321 01111 122322221 01124686665311
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.+....+++.+...|++|-+++-..
T Consensus 76 -----~~~~v~~vi~~l~~~L~~g~iIID~g 101 (470)
T PTZ00142 76 -----AGEAVDETIDNLLPLLEKGDIIIDGG 101 (470)
T ss_pred -----ChHHHHHHHHHHHhhCCCCCEEEECC
Confidence 23567788888999999887665443
No 472
>PRK06101 short chain dehydrogenase; Provisional
Probab=80.05 E-value=28 Score=27.61 Aligned_cols=53 Identities=17% Similarity=0.390 Sum_probs=34.9
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD 107 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~ 107 (237)
.+|-.|+ +|.++..+ +++|. +++.++.+++.++...+.. .++.++.+|+.+..
T Consensus 3 ~vlItGa-s~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~ 59 (240)
T PRK06101 3 AVLITGA-TSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQS---ANIFTLAFDVTDHP 59 (240)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc---CCCeEEEeeCCCHH
Confidence 5676775 45555444 45565 8999999987766554432 35778888987643
No 473
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=79.97 E-value=18 Score=28.19 Aligned_cols=86 Identities=13% Similarity=0.225 Sum_probs=52.5
Q ss_pred EEEEccCCchhHHHHHH----cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEeccccc
Q 026558 51 ILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 51 iLdlG~G~G~~~~~~~~----~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~ 124 (237)
|--|| -+|..+..+++ +|+ +++++--++.-+... +.+.+++.|+.++.. -.-..||+|++.....
T Consensus 3 IaiIg-AsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~-------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 3 IAIIG-ASGKAGSRILKEALKRGH-EVTAIVRNASKLAAR-------QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred EEEEe-cCchhHHHHHHHHHhCCC-eeEEEEeChHhcccc-------ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 44454 47766666544 566 999998887544322 356788999988763 2236799999964332
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKD 149 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~p 149 (237)
.- ...+......+.+...|+.
T Consensus 74 ~~----~~~~~~~k~~~~li~~l~~ 94 (211)
T COG2910 74 AS----DNDELHSKSIEALIEALKG 94 (211)
T ss_pred CC----ChhHHHHHHHHHHHHHHhh
Confidence 11 2223344446666666665
No 474
>PLN02253 xanthoxin dehydrogenase
Probab=79.87 E-value=11 Score=30.62 Aligned_cols=72 Identities=21% Similarity=0.379 Sum_probs=47.2
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
++|-.|+ +|.++..+ ++.|. +++.++.++...+...+.+....++.++.+|+.+.... .-+..|+
T Consensus 20 ~~lItGa-s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id~ 97 (280)
T PLN02253 20 VALVTGG-ATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLDI 97 (280)
T ss_pred EEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCCE
Confidence 6887774 55555544 44555 89999998877666555554334678888999775321 1246899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 98 li~~Ag~ 104 (280)
T PLN02253 98 MVNNAGL 104 (280)
T ss_pred EEECCCc
Confidence 9887643
No 475
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.85 E-value=22 Score=29.31 Aligned_cols=88 Identities=16% Similarity=0.335 Sum_probs=54.3
Q ss_pred cEEEEccCC--chhHHHHHHcCC---CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 50 RILIVGCGN--SAFSEGMVDDGY---EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~---~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
+|.=||||. +.+...+.+.+. .++++.|.+++.++.+.+.. .+.. ..|..+.. ...|+|+..-
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~----g~~~-~~~~~e~~----~~aDiIiLav--- 71 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY----GITI-TTNNNEVA----NSADILILSI--- 71 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc----CcEE-eCCcHHHH----hhCCEEEEEe---
Confidence 678889887 344455555552 37999999998877766543 2222 22322221 3469888742
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.....+++++...++++. +++..
T Consensus 72 -------kP~~~~~vl~~l~~~~~~~~-lvISi 96 (272)
T PRK12491 72 -------KPDLYSSVINQIKDQIKNDV-IVVTI 96 (272)
T ss_pred -------ChHHHHHHHHHHHHhhcCCc-EEEEe
Confidence 23667888888888787664 44433
No 476
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.75 E-value=9.2 Score=30.38 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=47.1
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
+||-.|+ +|.++.. +++++. ++++++.++...+.+...+....++.++.+|+.+...+ ..+.+|+
T Consensus 7 ~vlItGa-sg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 84 (251)
T PRK07231 7 VAIVTGA-SSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVDI 84 (251)
T ss_pred EEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 7888875 4444444 455565 89999999877776655543224577888998764321 1246899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
|+.....
T Consensus 85 vi~~ag~ 91 (251)
T PRK07231 85 LVNNAGT 91 (251)
T ss_pred EEECCCC
Confidence 9987643
No 477
>PRK05854 short chain dehydrogenase; Provisional
Probab=79.64 E-value=35 Score=28.54 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=46.2
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcC---CCCCcEEEEccccccccc---------cCCC
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEF---------QTGS 113 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~---------~~~~ 113 (237)
++|-.|++.| ++. .+++.|. +|+.+..+++..+.+.+.+. ...++.++.+|+.+.... ..+.
T Consensus 16 ~~lITGas~G-IG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~ 93 (313)
T PRK05854 16 RAVVTGASDG-LGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGRP 93 (313)
T ss_pred EEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 7777776554 343 3455565 89999988776665555442 123578888999775421 1356
Q ss_pred ccEEEecccc
Q 026558 114 FDSVVDKGTL 123 (237)
Q Consensus 114 fD~I~~~~~l 123 (237)
.|+++.+...
T Consensus 94 iD~li~nAG~ 103 (313)
T PRK05854 94 IHLLINNAGV 103 (313)
T ss_pred ccEEEECCcc
Confidence 8999987654
No 478
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=79.64 E-value=23 Score=30.31 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=55.3
Q ss_pred CcEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----cccccCCCccEEEeccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----MDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----~~~~~~~~fD~I~~~~~ 122 (237)
.+||-.|+|. |..+..+++.. ...+++++.++...+.+++.-. ..++..+-.+ +.......+|+|+....
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~----~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g 263 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA----THVINPKEEDLVAAIREITGGGVDYALDTTG 263 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----cEEecCCCcCHHHHHHHHhCCCCcEEEECCC
Confidence 3777777654 55656666654 3369999999988887765321 1222111111 11112456899986421
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
- ...+..+.+.|+++|+++...
T Consensus 264 ~-------------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 264 V-------------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred C-------------cHHHHHHHHHhccCCEEEEeC
Confidence 0 235778899999999988754
No 479
>PRK05993 short chain dehydrogenase; Provisional
Probab=79.61 E-value=32 Score=28.04 Aligned_cols=67 Identities=22% Similarity=0.429 Sum_probs=43.6
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----c------cCCCcc
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----F------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~------~~~~fD 115 (237)
+||-.|+ +|.++.. +++.|. ++++++.+++.++..... .+.++.+|+.+... + ..+..|
T Consensus 6 ~vlItGa-sggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~-----~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id 78 (277)
T PRK05993 6 SILITGC-SSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAE-----GLEAFQLDYAEPESIAALVAQVLELSGGRLD 78 (277)
T ss_pred EEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC-----CceEEEccCCCHHHHHHHHHHHHHHcCCCcc
Confidence 6888886 4444444 445565 899999998777655432 46778888876421 1 124689
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 79 ~li~~Ag~ 86 (277)
T PRK05993 79 ALFNNGAY 86 (277)
T ss_pred EEEECCCc
Confidence 99987543
No 480
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.30 E-value=10 Score=32.09 Aligned_cols=95 Identities=22% Similarity=0.201 Sum_probs=56.9
Q ss_pred cEEEEcc-CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccce
Q 026558 50 RILIVGC-GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~-G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~~ 125 (237)
+|--+|. |-|++++.+++.-..+|+++|-+..-.+.+-+++....-+.+. .|-..... .-+.-.|-|.+.
T Consensus 184 ~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~-~d~d~~~~~~~~~dg~~~~v~~~----- 257 (360)
T KOG0023|consen 184 WVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDST-EDPDIMKAIMKTTDGGIDTVSNL----- 257 (360)
T ss_pred EEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEec-CCHHHHHHHHHhhcCcceeeeec-----
Confidence 5555554 4689999998886559999999987778777776331111111 01111110 112233333321
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
....++.+...||++|.++++....
T Consensus 258 ----------a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 258 ----------AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred ----------cccchHHHHHHhhcCCEEEEEeCcC
Confidence 1334677889999999999987654
No 481
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=79.16 E-value=1.1 Score=32.31 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=34.7
Q ss_pred CcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 95 QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 95 ~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.+..+|+.+...-....+|+|+.++.--. .++.-=..++++.+.++++|||++...+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~----~nPelWs~e~~~~l~~~~~~~~~l~Tys 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPA----KNPELWSEELFKKLARLSKPGGTLATYS 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TT----TSGGGSSHHHHHHHHHHEEEEEEEEES-
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCc----CCcccCCHHHHHHHHHHhCCCcEEEEee
Confidence 4567888887643222478999988753111 1122223679999999999999775433
No 482
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=79.08 E-value=13 Score=27.98 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=43.4
Q ss_pred EEEEccCCchhHHHHHH----cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc--cCCCccEEEecc
Q 026558 51 ILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDKG 121 (237)
Q Consensus 51 iLdlG~G~G~~~~~~~~----~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~I~~~~ 121 (237)
|+-+| |+|..+..+++ .++ +++++--++.-++. ..+++++.+|+.+.... .-..+|.|+...
T Consensus 1 I~V~G-atG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFG-ATGFVGRALAKQLLRRGH-EVTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAA 68 (183)
T ss_dssp EEEET-TTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred eEEEC-CCChHHHHHHHHHHHCCC-EEEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhh
Confidence 45566 57877776655 454 99999998875555 36899999999876421 123689999854
No 483
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=78.92 E-value=10 Score=31.60 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=54.1
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|--||+|. | .+...+++.++ ++++.|.+++.++.+++.. ... ..+..++. ..-...|+|++.-+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g-----~~~-~~s~~~~~-~~~~~~dvIi~~vp----- 68 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDR-----TTG-VANLRELS-QRLSAPRVVWVMVP----- 68 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcC-----Ccc-cCCHHHHH-hhcCCCCEEEEEcC-----
Confidence 466678876 3 35556666776 8999999998887776532 111 12222221 11134688887422
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
......+++++...|++|-+++-.
T Consensus 69 -----~~~~~~v~~~l~~~l~~g~ivid~ 92 (298)
T TIGR00872 69 -----HGIVDAVLEELAPTLEKGDIVIDG 92 (298)
T ss_pred -----chHHHHHHHHHHhhCCCCCEEEEC
Confidence 135677788888888888655443
No 484
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=78.84 E-value=29 Score=27.82 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=47.7
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|-.| |+|.++..++ +.|. +++.++.++..++.+.+.+.. ..++.++.+|+.+.... ..+..|
T Consensus 14 ~ilItG-a~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id 91 (259)
T PRK08213 14 TALVTG-GSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHVD 91 (259)
T ss_pred EEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 788888 4565555554 4455 899999988777766655432 23567889999874321 124689
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
.|+.....
T Consensus 92 ~vi~~ag~ 99 (259)
T PRK08213 92 ILVNNAGA 99 (259)
T ss_pred EEEECCCC
Confidence 99887543
No 485
>PRK06484 short chain dehydrogenase; Validated
Probab=78.75 E-value=35 Score=30.67 Aligned_cols=105 Identities=14% Similarity=0.257 Sum_probs=61.1
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----c-----cCCCccEE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----F-----QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~-----~~~~fD~I 117 (237)
.+|-.|++.| .+...+++.|. +|+.++.++..++.+.+... ..+..+.+|+.+... + .-+..|++
T Consensus 271 ~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l 347 (520)
T PRK06484 271 VVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALG--DEHLSVQADITDEAAVESAFAQIQARWGRLDVL 347 (520)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CceeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 6777776554 22334455665 89999999887777666542 245567788876431 1 12578999
Q ss_pred Eeccccceec--cCCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLL--CGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~--~~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.+....... ....+.++.. .+++.+...++.+|.+++.+
T Consensus 348 i~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 348 VNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred EECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 9875432110 0001222222 24556666777778877654
No 486
>PRK08655 prephenate dehydrogenase; Provisional
Probab=78.51 E-value=15 Score=32.62 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=50.4
Q ss_pred cEEEEc-cCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVG-CGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG-~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+|.=+| +|. | .++..+.+.++ .++++|.++.......... ++.+ ..+..+. -...|+|+..-+.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~~~----gv~~-~~~~~e~----~~~aDvVIlavp~--- 68 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAKEL----GVEY-ANDNIDA----AKDADIVIISVPI--- 68 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHc----CCee-ccCHHHH----hccCCEEEEecCH---
Confidence 466676 453 3 34444455565 8999999887653333322 2221 1122111 2457999875433
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....+++++...+++|..++-..
T Consensus 69 -------~~~~~vl~~l~~~l~~~~iViDvs 92 (437)
T PRK08655 69 -------NVTEDVIKEVAPHVKEGSLLMDVT 92 (437)
T ss_pred -------HHHHHHHHHHHhhCCCCCEEEEcc
Confidence 445678888888888887655444
No 487
>PRK05867 short chain dehydrogenase; Provisional
Probab=78.18 E-value=11 Score=30.29 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=48.2
Q ss_pred CcEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 49 QRILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 49 ~~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
+.+|-.|++.|. +...+++.|. +++.++.+++.++...+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 88 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGID 88 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 378888875542 3334455665 899999998877776665532 23567788888764311 125789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 89 ~lv~~ag~ 96 (253)
T PRK05867 89 IAVCNAGI 96 (253)
T ss_pred EEEECCCC
Confidence 99987654
No 488
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=78.16 E-value=33 Score=27.32 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=64.2
Q ss_pred cChHHHHHhhCCCCC-CcEEEEccCCch--hHHHH--HH-cCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEcccc
Q 026558 34 PSLAPLIKLYVPSHH-QRILIVGCGNSA--FSEGM--VD-DGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVR 104 (237)
Q Consensus 34 ~~~~~~l~~~~~~~~-~~iLdlG~G~G~--~~~~~--~~-~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~ 104 (237)
+...++|..+..... +.|++..|+-|. .++.| +. +-..+++.|-.++..+...++.+... +-++|+.++..
T Consensus 27 p~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~ 106 (218)
T PF07279_consen 27 PGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAP 106 (218)
T ss_pred CCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCH
Confidence 446777877765444 488898665432 23333 22 22348999998888877777776422 34588888854
Q ss_pred c-cccccCCCccEEEeccccceeccCCCChHHHH-HHHHHHHHhcCCCcEEEEEE
Q 026558 105 Q-MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNAT-QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 105 ~-~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~-~~l~~~~~~L~pgG~l~~~~ 157 (237)
+ .. ..-...|.++.+.-. ++.. .+|+.+. +.|.|-+++..
T Consensus 107 e~~~-~~~~~iDF~vVDc~~----------~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 107 EEVM-PGLKGIDFVVVDCKR----------EDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred HHHH-hhccCCCEEEEeCCc----------hhHHHHHHHHhc--cCCCceEEEEe
Confidence 3 22 112468888776432 2333 4444322 34557666654
No 489
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.11 E-value=32 Score=28.83 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=52.8
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---------ccCCCccEE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---------FQTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---------~~~~~fD~I 117 (237)
.||==|.|.| ..+..+++++. .+...|+++.......+.++....+....+|+.+..+ -.-+..|++
T Consensus 40 ~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~IL 118 (300)
T KOG1201|consen 40 IVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDVDIL 118 (300)
T ss_pred EEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCceEE
Confidence 6676677766 34456677775 8999999988888877777543468888899987542 124688999
Q ss_pred Eeccccc
Q 026558 118 VDKGTLD 124 (237)
Q Consensus 118 ~~~~~l~ 124 (237)
+.+..+-
T Consensus 119 VNNAGI~ 125 (300)
T KOG1201|consen 119 VNNAGIV 125 (300)
T ss_pred Eeccccc
Confidence 9986543
No 490
>PRK08507 prephenate dehydrogenase; Validated
Probab=78.07 E-value=12 Score=30.79 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=51.1
Q ss_pred cEEEEccCC--chhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGN--SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+|.=+|+|. |.++..+.+.++ ..++++|.++..++.+++.- -+.. ..+..+. . ..|+|+..-+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g----~~~~-~~~~~~~----~-~aD~Vilavp---- 67 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELG----LVDE-IVSFEEL----K-KCDVIFLAIP---- 67 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCC----CCcc-cCCHHHH----h-cCCEEEEeCc----
Confidence 466678776 345566666663 37999999998887775431 1111 1122121 1 2799987533
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
......++.++.. ++++..++
T Consensus 68 ------~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 68 ------VDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred ------HHHHHHHHHHHhc-cCCCCEEE
Confidence 3555777888887 87776554
No 491
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=77.94 E-value=29 Score=29.20 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=44.7
Q ss_pred cEEEEccCCchhHHHHHH----cC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc--CCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMVD----DG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ--TGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~----~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~--~~~fD~I~~~~~ 122 (237)
+||-.| |+|.++..+++ .+ ..++++++.++.......+.... .++.++.+|+.+...+. -..+|+|+....
T Consensus 6 ~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~-~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~Ag 83 (324)
T TIGR03589 6 SILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA-PCLRFFIGDVRDKERLTRALRGVDYVVHAAA 83 (324)
T ss_pred EEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHhcCCEEEECcc
Confidence 788777 46776666654 33 23788888765544333333322 46788999998754221 134899988655
Q ss_pred c
Q 026558 123 L 123 (237)
Q Consensus 123 l 123 (237)
.
T Consensus 84 ~ 84 (324)
T TIGR03589 84 L 84 (324)
T ss_pred c
Confidence 4
No 492
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.92 E-value=6.2 Score=32.96 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=61.3
Q ss_pred EEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 75 NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 75 ~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
-+...+...+.++.+. .++.++++|+.++.. -+.+.+|.++...+-+++ +..+...++.++.+-+.+|..+
T Consensus 291 P~yl~~~~YEsir~n~---~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwm-----td~qln~lws~isrta~~gA~V 362 (414)
T COG5379 291 PAYLDEGVYESIRQNL---RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWM-----TDGQLNSLWSEISRTAEAGARV 362 (414)
T ss_pred ChhhchhhHHHHHhhh---hheeeecccHHHHhccCCCCCcceEEEecchhhc-----ccchHHHHHHHHhhccCCCcEE
Confidence 3455677777777776 468899999988752 356889999988888887 6678899999999999999999
Q ss_pred EEEEcC
Q 026558 154 ILVTYG 159 (237)
Q Consensus 154 ~~~~~~ 159 (237)
++-+..
T Consensus 363 ifRtaa 368 (414)
T COG5379 363 IFRTAA 368 (414)
T ss_pred EEeccc
Confidence 997643
No 493
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=77.88 E-value=30 Score=27.62 Aligned_cols=72 Identities=17% Similarity=0.306 Sum_probs=47.2
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
+||-.|+ +|.++..+ ++.|+ +|++++.++..++...+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 12 ~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 89 (255)
T PRK07523 12 RALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPID 89 (255)
T ss_pred EEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence 7888884 56555554 44565 899999998777666555532 13567788888764311 124689
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+|+.+...
T Consensus 90 ~li~~ag~ 97 (255)
T PRK07523 90 ILVNNAGM 97 (255)
T ss_pred EEEECCCC
Confidence 99887643
No 494
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=77.76 E-value=34 Score=27.29 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=45.8
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
.+|-.|++ |.++.. +++.|. +++.++.++..++.+.+.+.. ...+.++.+|+.+.... .-+.+|
T Consensus 11 ~~lItGas-~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 88 (254)
T PRK08085 11 NILITGSA-QGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPID 88 (254)
T ss_pred EEEEECCC-ChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCCC
Confidence 78888854 444444 445565 899999988776666555432 23566778888764311 125689
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 89 ~vi~~ag~ 96 (254)
T PRK08085 89 VLINNAGI 96 (254)
T ss_pred EEEECCCc
Confidence 99987653
No 495
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=77.57 E-value=26 Score=29.40 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=51.4
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc---CC-CCCcEEEEccccccccccCCCccEEEeccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKY---SN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~---~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
.+|+-+|+|. | .++..+++.++ .++.+..++. +..+++. .. ..+..+....+...+ -....+|+|+..--
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK 81 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLK 81 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEec
Confidence 3799999987 4 45556666665 7777777652 2222221 00 011111111111111 12357899987422
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
- .+...+++.+...+.+++.++...
T Consensus 82 ~----------~~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 82 T----------TANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred C----------CChHhHHHHHhhhcCCCCEEEEec
Confidence 2 223567777888889998876654
No 496
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=77.47 E-value=38 Score=28.20 Aligned_cols=90 Identities=6% Similarity=-0.023 Sum_probs=51.2
Q ss_pred cEEEE--ccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----c-ccCCCccEEEecc
Q 026558 50 RILIV--GCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----E-FQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdl--G~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~-~~~~~fD~I~~~~ 121 (237)
.+|=+ |+|. |..+..+++....++++++.++...+.+++.- -..++..+-.++. . .....+|+|+...
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g----~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~ 220 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIG----AEYVLNSSDPDFLEDLKELIAKLNATIFFDAV 220 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----CcEEEECCCccHHHHHHHHhCCCCCcEEEECC
Confidence 45544 4433 55556666654458999999998888887631 1122221111111 1 1234689998632
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ...+....+.|+++|+++...
T Consensus 221 g--------------~~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 221 G--------------GGLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred C--------------cHHHHHHHHhhCCCCEEEEEE
Confidence 1 112345677889999988764
No 497
>PRK06482 short chain dehydrogenase; Provisional
Probab=77.43 E-value=37 Score=27.51 Aligned_cols=70 Identities=23% Similarity=0.392 Sum_probs=46.3
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
+||-.|+ +|.++..+ ++.+. ++++++.++..++..++... .++.++.+|+.+.... ..+..|+
T Consensus 4 ~vlVtGa-sg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (276)
T PRK06482 4 TWFITGA-SSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYG--DRLWVLQLDVTDSAAVRAVVDRAFAALGRIDV 79 (276)
T ss_pred EEEEecC-CCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcc--CceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5777775 55555554 44555 89999999887776665542 3678888999765311 1246899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
|+.+...
T Consensus 80 vi~~ag~ 86 (276)
T PRK06482 80 VVSNAGY 86 (276)
T ss_pred EEECCCC
Confidence 9887543
No 498
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=77.39 E-value=35 Score=27.25 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=45.7
Q ss_pred CcEEEEccCCchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCc
Q 026558 49 QRILIVGCGNSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
++||-.|++.| ++. .+++++. +++.++.++..++.+...... ..++.++.+|+.+.... .-+.+
T Consensus 12 k~vlVtG~s~g-IG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~ 89 (255)
T PRK06113 12 KCAIITGAGAG-IGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV 89 (255)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 38999996554 333 3455565 888888887776665444321 13567788888764321 12468
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+++.....
T Consensus 90 d~li~~ag~ 98 (255)
T PRK06113 90 DILVNNAGG 98 (255)
T ss_pred CEEEECCCC
Confidence 999887553
No 499
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.12 E-value=34 Score=28.81 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=55.8
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CC------CcEEEEccccccccccCCCccEEE
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RP------QLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~------~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
+|.-+|+|. |. ++..+++.++ +|+.++.+++.++..++.-.+ .+ ++.+ ..|..+. ..+.+|+|+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---~~~~~Dlii 76 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISV-KSAIDEV---LSDNATCII 76 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEE-eCCHHHH---HhCCCCEEE
Confidence 477788887 43 5555666665 889999988877766654211 11 1111 1111111 124679887
Q ss_pred eccccceeccCCCChHHHHHHHHHHHH-hcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWR-VLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~~~ 157 (237)
..- ...+...+++.+.. .+.++..++...
T Consensus 77 iav----------ks~~~~~~l~~l~~~~l~~~~~vv~~~ 106 (326)
T PRK14620 77 LAV----------PTQQLRTICQQLQDCHLKKNTPILICS 106 (326)
T ss_pred EEe----------CHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 742 33567788888887 888887666544
No 500
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=77.06 E-value=7.8 Score=28.17 Aligned_cols=72 Identities=15% Similarity=0.335 Sum_probs=44.9
Q ss_pred CcEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
++||-+|+|. |. ....++..+..+++.+.-+.+-.+...+.+.+ .++.+. ++.++. -....+|+|++.-+..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~-~~~~~~--~~~~~~-~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG-VNIEAI--PLEDLE-EALQEADIVINATPSG 86 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG-CSEEEE--EGGGHC-HHHHTESEEEE-SSTT
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc-ccccee--eHHHHH-HHHhhCCeEEEecCCC
Confidence 4899999865 32 33445666766799999998777776666621 234444 334433 1135799999875543
Done!