BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026559
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRN 85
YYEVL VPR AS E IK+AYRKLALK+HPDKN N EEA +RF ++ AYEVLSD++ R+
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 86 IYDTYG 91
IYD YG
Sbjct: 71 IYDRYG 76
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSET 83
GK YY+ L + RGASDE+IKRAYR+ AL+YHPDKN+ A ++F EI AY+VLSD
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60
Query: 84 RNIYDTYGEEGLK 96
R I+D YGEEGLK
Sbjct: 61 REIFDRYGEEGLK 73
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
A + YYE+L V + A + +I++AY++LA+KYHPD+NQG++EA +F EI AYEVL+DS+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 83 TRNIYDTYGEEGLKQHAAXXXXXXXXXVNIQDIFSSFFG 121
R YD YG +Q + DIF FG
Sbjct: 61 KRAAYDQYGHAAFEQ-GGMGGGGFGGGADFSDIFGDVFG 98
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
A + YYE+L V + A + +I++AY++LA+KYHPD+NQG++EA +F EI AYEVL+DS+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 83 TRNIYDTYGEEGLKQHAAXXXXXXXXXVNIQDIFSSFFG 121
R YD YG +Q + DIF FG
Sbjct: 61 KRAAYDQYGHAAFEQ-GGMGGGGFGGGADFSDIFGDVFG 98
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Query: 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE-ANKRFAEINNAYEVLSDSETR 84
SYYE+L VPR AS + IK+AYR+ AL++HPDKN N+E A K+F E+ AYEVLSD R
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 85 NIYDTYGEEGL 95
IYD YG EGL
Sbjct: 63 EIYDRYGREGL 73
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 54/74 (72%)
Query: 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDS 81
+G+S Y VL + + A+ + IK++YRKLALKYHPDKN N EA +F EINNA+ +L+D+
Sbjct: 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDA 73
Query: 82 ETRNIYDTYGEEGL 95
RNIYD YG GL
Sbjct: 74 TKRNIYDKYGSLGL 87
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
A + YYE+L V + A + +I++AY++LA+KYHPD+NQG++EA +F EI AYEVL+DS+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 83 TRNIYDTYGEEGLKQ 97
R YD YG +Q
Sbjct: 61 KRAAYDQYGHAAFEQ 75
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRN 85
YYEVL V AS E IK+AYRKLAL++HPDKN N EEA K+F ++ AYEVLSDS+ R+
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 86 IYDTYG 91
+YD G
Sbjct: 71 LYDRAG 76
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
+++Y +L V + AS +I++A++KLALK HPDKN N A+ F +IN AYEVL D + R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 85 NIYDTYGEEGLK 96
YD YGE+GL+
Sbjct: 81 KKYDKYGEKGLE 92
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
YY++L VP+ AS+ QIK+A+ KLA+KYHPDKN+ + +A +F EI AYE LSD+ R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKE 67
Query: 87 YDTYGEEGL 95
YDT G
Sbjct: 68 YDTLGHSAF 76
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
+++Y +L V + AS +I++A++KLALK HPDKN N A+ F +IN AYEVL D + R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 85 NIYDTYGEEGLK 96
YD YGE+GL+
Sbjct: 62 KKYDKYGEKGLE 73
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
YY++L VPR AS ++IK+AY +LA KYHPD N+ + +A ++F+++ AYEVLSD R
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 87 YDTYG 91
YD YG
Sbjct: 69 YDAYG 73
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 74.7 bits (182), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
YYE+L V RGASDE +K+AYR+LALK+HPDKN A + F I AY VLS+ E R
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 87 YDTYG 91
YD +G
Sbjct: 68 YDQFG 72
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 3/68 (4%)
Query: 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRN 85
+YY+VL V A+ E++K+AYRKLALKYHPDKN E +F +I+ AYEVLSD++ R
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE---KFKQISQAYEVLSDAKKRE 63
Query: 86 IYDTYGEE 93
+YD GE+
Sbjct: 64 LYDKGGEQ 71
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 3/67 (4%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
YY+VL V ASD ++K+AYRK+ALK+HPDKN E +F +I+ AYEVLSD + R I
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAE---QFKQISQAYEVLSDEKKRQI 66
Query: 87 YDTYGEE 93
YD GEE
Sbjct: 67 YDQGGEE 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 28 YEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIY 87
Y++L V A+++++K+ YRK ALKYHPDK G+ E +F EI+ A+E+L+D + R IY
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE---KFKEISEAFEILNDPQKREIY 67
Query: 88 DTYGEEGLK 96
D YG E +
Sbjct: 68 DQYGLEAAR 76
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 28 YEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIY 87
Y VL V R AS IK+AY+KLA ++HPDKN+ + A RF +I+ AYE+LS+ E R Y
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRTNY 78
Query: 88 DTYG 91
D YG
Sbjct: 79 DHYG 82
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 28 YEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIY 87
Y++L VP A+ QIK AY + YHPD+N G+ EA +RF I+ AY VL + R Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 88 D 88
D
Sbjct: 80 D 80
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLS 79
N + K YY +L V + IK AYR+LA KYHPD ++ N +A +F ++ A+EVL
Sbjct: 23 NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLK 81
Query: 80 DSETRNIYDTYGEEGLKQHAAXXXXXXXXXVNIQ--------DIFSSFFG-GGPMEEDEK 130
D + R YD L QH + Q DIFSS FG +
Sbjct: 82 DEQRRAEYDQ-----LWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQH 136
Query: 131 IVKGDDVIVELDATLED 147
+G D+ +E+ LE+
Sbjct: 137 AARGHDLEIEVAVFLEE 153
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG---NEEANKRFAEINNAYEVLSDS 81
+ YY++L V R A ++I +AYRKLAL++HPD Q ++A K+F +I A EVLSD
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 82 ETRNIYD 88
E R +D
Sbjct: 442 EMRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG---NEEANKRFAEINNAYEVLSDS 81
+ YY++L V R A ++I +AYRKLAL++HPD Q ++A K+F +I A EVLSD
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 82 ETRNIYD 88
E R +D
Sbjct: 442 EXRKKFD 448
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 52.0 bits (123), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
K YY ++ V + IK AYR+LA KYHPD ++ +A RF E+ A+EVLSD + R
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRR 63
Query: 85 NIYD 88
YD
Sbjct: 64 AEYD 67
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 28 YEVLQVPRGASDEQ-IKRAYRKLALKYHPDKNQGNEE---ANKRFAEINNAYEVLSDSET 83
Y+VL+V R D+Q + +AYR LA K+HPD+ + EE A +RF I AYE L D E
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 84 RNIYDTY 90
+ YD Y
Sbjct: 78 KTNYDYY 84
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN------EEANKRFAEINNAYEVL 78
K +Y +L A+ +K+ Y+KL L YHPDK + EE ++F EI+ A+++L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 79 SDSETRNIYD 88
+ ET+ YD
Sbjct: 76 GNEETKKKYD 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN------EEANKRFAEINNAYEVL 78
K +Y +L A+ +K+ Y+KL L YHPDK + EE ++F EI+ A+++L
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 79 SDSETRNIYD 88
+ ET+ YD
Sbjct: 70 GNEETKREYD 79
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
YY +L +S EQI ++ AL+ HPDK+ N +A + F ++ A E+L++ E+R
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRAR 81
Query: 87 YDTY 90
YD +
Sbjct: 82 YDHW 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDK--NQGNEEANKRFAEINNAYEVL 78
K +++L V GAS +++ +AYRKLA+ HPDK G+E+A F + NA L
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDA---FKAVVNARTAL 79
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 28/127 (22%)
Query: 133 KGDDVIVELDATLEDLYMGGSLKVWREKNVI-KPAPGK-------RRCNCRN----EVYH 180
+G D+ E+ A+LE+LY G + K+ K ++ K G+ ++C N +
Sbjct: 10 RGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVT 69
Query: 181 KQIGPGMFQQMTEQV---------------CDQCQNVKYEREGYFVTVDIEKGMQDGQVS 225
+Q+GP M Q+ + C C K E E + V +E GM+DGQ
Sbjct: 70 RQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRI 128
Query: 226 FIKFKCD 232
K + D
Sbjct: 129 VFKGEAD 135
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN---EEANKRFAEINNAYEVLS 79
AG++ ++ + + + EQ+K+ YRK L HPDK G + A F E+N+A+
Sbjct: 47 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 106
Query: 80 DSETRNIY 87
+ + +Y
Sbjct: 107 NQGQKPLY 114
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN---EEANKRFAEINNAYEV 77
+ AG++ ++ + + EQ+K+ YRK L HPDK G + A F E+N+A+
Sbjct: 32 LWAGETKWKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSE 91
Query: 78 LSDSETRNIY 87
+ + +Y
Sbjct: 92 FENQGQKPLY 101
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN---EEANKRFAEINNAY 75
+ AG++ ++ + + + EQ+K+ YRK L HPDK G + A F E+N+A+
Sbjct: 113 LWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAW 170
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN---EEANKRFAEINNAY 75
AG++ ++ + + + EQ+K+ YRK L HP K G + A F E+N+A+
Sbjct: 32 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAW 87
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN---EEANKRFAEINNAY 75
AG++ ++ + + + EQ+K+ YRK L HP K G + A F E+N+A+
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAW 86
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 12/70 (17%)
Query: 26 SYYEVL------QVPRGASDE-QIKRAYRKLALKYHPD-KNQGNEEANKRFAEINNAYEV 77
++YE+ ++P D+ ++++ YR+L ++HPD QG+E++ + +N AY
Sbjct: 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQS----STLNQAYHT 67
Query: 78 LSDSETRNIY 87
L D R+ Y
Sbjct: 68 LKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 12/70 (17%)
Query: 26 SYYEVL------QVPRGASDE-QIKRAYRKLALKYHPD-KNQGNEEANKRFAEINNAYEV 77
++YE+ ++P D+ ++++ YR+L ++HPD QG+E++ + +N AY
Sbjct: 4 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQS----STLNQAYHT 59
Query: 78 LSDSETRNIY 87
L D R+ Y
Sbjct: 60 LKDPLRRSQY 69
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 43 KRAYRKLALKYHPDKNQGNEE-ANKRFAEINN 73
K+ R+L LK+HPDKN N + AN+ F + N
Sbjct: 34 KKIIRRLYLKWHPDKNPENHDIANEVFKHLQN 65
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi
Length = 456
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 168 GKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQN-VKYEREGYFVTVDI 215
K + +++HK+I + +M QVC++ N V E + YF T+ +
Sbjct: 147 SKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPV 195
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal
Permeability-Increasing Protein
Length = 456
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 168 GKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQN-VKYEREGYFVTVDI 215
K + +++HK+I + +M QVC++ N V + + YF T+ +
Sbjct: 147 SKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSKLQPYFQTLPV 195
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 46 YRKLALKYHPDKNQGNEE-----ANKRFAEINNAYEVLSDSETRNIY 87
+R L ++HPD E A ++ A+IN+AY+ L D R Y
Sbjct: 27 FRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEY 73
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 146 EDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQ--IGPGMFQQMTEQVCDQCQNVK 203
E+LY GS E+ AP ++ N E+YH+Q + FQQ E +
Sbjct: 2 ENLYFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPE-------GLF 54
Query: 204 YEREG 208
YE EG
Sbjct: 55 YEFEG 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,732,182
Number of Sequences: 62578
Number of extensions: 268806
Number of successful extensions: 689
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 43
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)