Query 026559
Match_columns 237
No_of_seqs 221 out of 2142
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 09:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 2.4E-61 5.1E-66 420.3 21.1 214 22-236 1-240 (371)
2 PRK14296 chaperone protein Dna 100.0 1.8E-50 3.9E-55 359.7 21.5 210 24-235 3-248 (372)
3 PRK14288 chaperone protein Dna 100.0 2.3E-50 4.9E-55 358.9 20.5 206 24-235 2-234 (369)
4 PRK14285 chaperone protein Dna 100.0 1.2E-49 2.6E-54 353.8 21.4 210 24-236 2-242 (365)
5 PRK14298 chaperone protein Dna 100.0 1.5E-49 3.2E-54 354.5 21.4 211 23-235 3-240 (377)
6 PRK14286 chaperone protein Dna 100.0 1.1E-49 2.4E-54 354.9 20.2 210 24-236 3-246 (372)
7 PRK14282 chaperone protein Dna 100.0 2.4E-49 5.3E-54 352.7 21.9 212 24-235 3-251 (369)
8 PRK14287 chaperone protein Dna 100.0 3.4E-49 7.3E-54 351.6 21.3 209 24-235 3-237 (371)
9 PRK14276 chaperone protein Dna 100.0 4.1E-49 9E-54 352.3 21.4 211 24-236 3-246 (380)
10 PRK14280 chaperone protein Dna 100.0 5.4E-49 1.2E-53 351.1 21.3 212 24-236 3-243 (376)
11 PRK14278 chaperone protein Dna 100.0 9.8E-49 2.1E-53 349.4 22.4 211 24-236 2-239 (378)
12 PRK14297 chaperone protein Dna 100.0 1.1E-48 2.3E-53 349.8 22.3 212 24-235 3-247 (380)
13 PRK14277 chaperone protein Dna 100.0 1.5E-48 3.3E-53 349.3 20.1 213 23-235 3-254 (386)
14 PRK14279 chaperone protein Dna 100.0 2.3E-48 5E-53 348.3 20.9 211 23-236 7-269 (392)
15 PTZ00037 DnaJ_C chaperone prot 100.0 1.1E-48 2.4E-53 351.8 18.7 199 23-236 26-251 (421)
16 PRK10767 chaperone protein Dna 100.0 7.2E-48 1.6E-52 343.8 21.0 209 24-235 3-237 (371)
17 PRK14301 chaperone protein Dna 100.0 1.3E-47 2.9E-52 341.6 21.2 209 24-235 3-239 (373)
18 KOG0712 Molecular chaperone (D 100.0 1.4E-48 3E-53 336.0 14.4 199 24-235 3-228 (337)
19 PRK14284 chaperone protein Dna 100.0 1.1E-47 2.3E-52 344.3 20.6 209 25-236 1-254 (391)
20 PRK14294 chaperone protein Dna 100.0 9.2E-48 2E-52 342.2 19.9 208 23-235 2-239 (366)
21 PRK14281 chaperone protein Dna 100.0 4E-47 8.7E-52 341.0 21.5 213 24-236 2-262 (397)
22 TIGR02349 DnaJ_bact chaperone 100.0 3.5E-47 7.6E-52 337.6 20.0 208 26-235 1-242 (354)
23 PRK14295 chaperone protein Dna 100.0 6.4E-47 1.4E-51 338.7 20.8 208 23-235 7-261 (389)
24 PRK14291 chaperone protein Dna 100.0 1.3E-46 2.7E-51 336.5 20.8 208 24-235 2-250 (382)
25 PRK14290 chaperone protein Dna 100.0 1.8E-46 3.8E-51 333.9 21.5 207 25-233 3-245 (365)
26 PRK14289 chaperone protein Dna 100.0 5.6E-46 1.2E-50 333.0 21.0 211 23-235 3-253 (386)
27 PRK14283 chaperone protein Dna 100.0 8.5E-46 1.8E-50 330.9 19.9 209 23-235 3-245 (378)
28 PRK14292 chaperone protein Dna 100.0 1.6E-45 3.6E-50 328.6 21.6 210 25-236 2-240 (371)
29 PRK14300 chaperone protein Dna 100.0 1.4E-45 3E-50 328.7 20.3 208 24-235 2-240 (372)
30 PRK14293 chaperone protein Dna 100.0 6.1E-45 1.3E-49 325.0 20.1 209 24-235 2-242 (374)
31 KOG0713 Molecular chaperone (D 100.0 3.1E-42 6.7E-47 293.4 9.1 217 13-233 4-225 (336)
32 PRK14299 chaperone protein Dna 100.0 2.5E-36 5.5E-41 261.2 15.2 161 24-233 3-180 (291)
33 PRK10266 curved DNA-binding pr 100.0 9.2E-36 2E-40 259.5 16.9 177 24-236 3-185 (306)
34 KOG0715 Molecular chaperone (D 100.0 1.1E-32 2.4E-37 236.9 10.7 194 25-233 43-257 (288)
35 KOG0716 Molecular chaperone (D 99.9 3E-22 6.5E-27 166.2 4.1 74 24-97 30-103 (279)
36 KOG0691 Molecular chaperone (D 99.8 1.8E-21 4E-26 166.5 4.5 90 24-122 4-93 (296)
37 PTZ00341 Ring-infected erythro 99.8 4E-21 8.6E-26 182.6 6.7 75 21-96 569-643 (1136)
38 KOG0718 Molecular chaperone (D 99.8 5.9E-21 1.3E-25 168.4 4.3 73 24-96 8-83 (546)
39 KOG0717 Molecular chaperone (D 99.8 1.9E-20 4.1E-25 165.1 4.0 78 21-98 4-82 (508)
40 PF00226 DnaJ: DnaJ domain; I 99.8 8.9E-20 1.9E-24 122.9 3.7 63 26-88 1-64 (64)
41 PHA03102 Small T antigen; Revi 99.8 2.7E-19 5.9E-24 139.4 5.9 85 25-123 5-91 (153)
42 KOG0721 Molecular chaperone (D 99.8 1E-18 2.2E-23 140.9 7.7 73 23-95 97-169 (230)
43 KOG0719 Molecular chaperone (D 99.8 3.1E-19 6.8E-24 145.1 4.0 93 21-121 10-104 (264)
44 KOG0624 dsRNA-activated protei 99.7 1.6E-18 3.4E-23 149.0 6.9 79 21-100 390-471 (504)
45 TIGR03835 termin_org_DnaJ term 99.7 1.3E-18 2.8E-23 162.3 6.6 71 25-96 2-72 (871)
46 COG2214 CbpA DnaJ-class molecu 99.7 2.8E-17 6.1E-22 135.6 11.7 70 22-91 3-73 (237)
47 smart00271 DnaJ DnaJ molecular 99.7 1.1E-17 2.4E-22 111.1 6.6 59 25-83 1-60 (60)
48 KOG0714 Molecular chaperone (D 99.7 3.3E-17 7.2E-22 141.0 10.4 179 24-236 2-227 (306)
49 cd06257 DnaJ DnaJ domain or J- 99.7 3.5E-17 7.7E-22 106.7 6.3 55 26-80 1-55 (55)
50 KOG0550 Molecular chaperone (D 99.6 2.2E-16 4.8E-21 138.3 6.4 94 19-119 367-461 (486)
51 KOG0722 Molecular chaperone (D 99.6 2.2E-16 4.9E-21 130.0 4.6 86 4-90 7-97 (329)
52 PRK05014 hscB co-chaperone Hsc 99.5 5.7E-15 1.2E-19 118.2 5.7 65 25-89 1-72 (171)
53 PRK01356 hscB co-chaperone Hsc 99.5 6.7E-15 1.5E-19 117.2 5.0 65 25-89 2-71 (166)
54 PRK00294 hscB co-chaperone Hsc 99.5 2.4E-14 5.2E-19 114.5 6.0 67 23-89 2-75 (173)
55 KOG0720 Molecular chaperone (D 99.5 1.5E-14 3.2E-19 128.1 5.2 65 24-89 234-298 (490)
56 PRK03578 hscB co-chaperone Hsc 99.5 2.7E-14 5.8E-19 114.7 5.7 66 24-89 5-77 (176)
57 PTZ00100 DnaJ chaperone protei 99.5 5.2E-14 1.1E-18 104.4 4.4 52 24-79 64-115 (116)
58 COG5407 SEC63 Preprotein trans 99.4 1.5E-13 3.2E-18 121.5 6.2 89 11-99 79-177 (610)
59 PRK09430 djlA Dna-J like membr 99.4 3.3E-13 7.1E-18 115.5 5.4 57 25-81 200-263 (267)
60 PHA02624 large T antigen; Prov 99.4 3.6E-13 7.8E-18 124.8 5.3 60 24-87 10-71 (647)
61 PRK01773 hscB co-chaperone Hsc 99.1 7.8E-11 1.7E-15 94.3 5.3 64 25-88 2-72 (173)
62 TIGR00714 hscB Fe-S protein as 99.1 2.1E-10 4.6E-15 90.6 5.3 53 37-89 3-60 (157)
63 COG5269 ZUO1 Ribosome-associat 99.0 6.3E-10 1.4E-14 93.0 5.4 71 20-90 38-113 (379)
64 TIGR03835 termin_org_DnaJ term 99.0 2E-09 4.3E-14 101.6 8.4 69 134-236 656-724 (871)
65 KOG1150 Predicted molecular ch 98.9 7.5E-10 1.6E-14 88.6 3.9 61 25-85 53-114 (250)
66 KOG0568 Molecular chaperone (D 98.5 9.1E-08 2E-12 78.5 4.1 55 25-80 47-102 (342)
67 KOG0723 Molecular chaperone (D 98.5 2E-07 4.3E-12 67.3 5.2 51 28-82 59-109 (112)
68 KOG1789 Endocytosis protein RM 98.5 2.2E-07 4.8E-12 90.1 6.1 52 25-79 1281-1336(2235)
69 PF01556 CTDII: DnaJ C termina 98.1 5.5E-06 1.2E-10 58.1 4.5 50 136-232 1-50 (81)
70 PRK14284 chaperone protein Dna 97.9 2.5E-05 5.4E-10 70.7 6.5 58 132-235 275-332 (391)
71 PRK14291 chaperone protein Dna 97.9 2.4E-05 5.3E-10 70.5 6.4 57 132-235 272-328 (382)
72 PRK14282 chaperone protein Dna 97.9 2.8E-05 6E-10 69.8 6.5 56 132-234 273-328 (369)
73 PRK14300 chaperone protein Dna 97.9 3.2E-05 6.9E-10 69.5 6.4 57 132-235 262-318 (372)
74 TIGR02642 phage_xxxx uncharact 97.8 2.8E-05 6E-10 62.8 4.3 46 171-228 104-149 (186)
75 PRK14285 chaperone protein Dna 97.8 5.1E-05 1.1E-09 68.0 6.3 56 132-234 263-318 (365)
76 PRK14290 chaperone protein Dna 97.7 7E-05 1.5E-09 67.2 6.5 56 132-235 267-322 (365)
77 PRK14295 chaperone protein Dna 97.7 6.5E-05 1.4E-09 67.9 6.2 56 132-234 283-338 (389)
78 PRK14279 chaperone protein Dna 97.7 7.8E-05 1.7E-09 67.5 6.6 55 132-234 290-344 (392)
79 PRK14276 chaperone protein Dna 97.6 0.0001 2.2E-09 66.4 6.2 56 132-235 267-322 (380)
80 PRK14294 chaperone protein Dna 97.6 0.00011 2.3E-09 66.0 6.2 56 132-235 261-316 (366)
81 PRK14286 chaperone protein Dna 97.6 0.0001 2.2E-09 66.2 5.7 56 132-234 267-322 (372)
82 PRK14299 chaperone protein Dna 97.6 0.0001 2.2E-09 64.1 5.4 54 132-233 198-251 (291)
83 PRK14278 chaperone protein Dna 97.6 0.00015 3.2E-09 65.3 6.5 56 132-234 260-315 (378)
84 PRK14281 chaperone protein Dna 97.6 0.00012 2.6E-09 66.3 5.8 54 132-233 283-336 (397)
85 PRK14301 chaperone protein Dna 97.6 0.00015 3.3E-09 65.2 6.3 55 132-234 261-315 (373)
86 PRK10266 curved DNA-binding pr 97.6 0.00013 2.7E-09 64.0 5.7 54 132-233 206-259 (306)
87 PRK14288 chaperone protein Dna 97.6 0.00014 2.9E-09 65.4 5.8 56 132-234 255-310 (369)
88 PRK14297 chaperone protein Dna 97.5 0.00015 3.2E-09 65.4 5.8 54 132-233 269-322 (380)
89 PRK14280 chaperone protein Dna 97.5 0.00018 3.9E-09 64.8 6.2 55 132-234 264-318 (376)
90 TIGR02349 DnaJ_bact chaperone 97.5 0.00021 4.6E-09 63.8 6.5 55 132-234 264-318 (354)
91 PRK14287 chaperone protein Dna 97.5 0.00019 4.2E-09 64.5 6.1 55 132-234 259-313 (371)
92 KOG3192 Mitochondrial J-type c 97.5 6.5E-05 1.4E-09 58.2 2.1 67 22-88 5-78 (168)
93 PRK14298 chaperone protein Dna 97.5 0.00022 4.9E-09 64.2 5.8 55 132-234 262-316 (377)
94 KOG0431 Auxilin-like protein a 97.4 0.00026 5.6E-09 65.0 6.2 67 12-79 376-449 (453)
95 PRK14283 chaperone protein Dna 97.4 0.00033 7.1E-09 63.2 6.1 54 132-233 267-320 (378)
96 PRK10767 chaperone protein Dna 97.4 0.00036 7.8E-09 62.7 6.3 55 132-234 259-313 (371)
97 PRK14277 chaperone protein Dna 97.4 0.00031 6.7E-09 63.5 5.8 54 132-233 276-329 (386)
98 PRK14289 chaperone protein Dna 97.4 0.0004 8.7E-09 62.8 6.2 55 132-234 275-329 (386)
99 PRK14296 chaperone protein Dna 97.3 0.00037 8.1E-09 62.6 5.5 52 134-233 273-324 (372)
100 PTZ00037 DnaJ_C chaperone prot 97.3 0.00035 7.7E-09 63.7 5.3 55 132-233 271-327 (421)
101 COG0484 DnaJ DnaJ-class molecu 97.3 0.00044 9.4E-09 61.5 5.6 55 132-234 261-315 (371)
102 PRK14292 chaperone protein Dna 97.2 0.00049 1.1E-08 61.9 5.4 56 132-235 259-314 (371)
103 PRK14293 chaperone protein Dna 97.1 0.00058 1.3E-08 61.4 4.8 54 132-233 264-317 (374)
104 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.0 0.0012 2.6E-08 44.4 3.9 36 170-206 19-54 (66)
105 COG1076 DjlA DnaJ-domain-conta 96.8 0.00062 1.3E-08 54.7 1.9 54 25-78 113-173 (174)
106 COG1076 DjlA DnaJ-domain-conta 96.1 0.0022 4.9E-08 51.5 1.1 64 26-89 2-72 (174)
107 PLN03165 chaperone protein dna 95.7 0.029 6.3E-07 41.6 5.5 38 162-203 43-85 (111)
108 PF03656 Pam16: Pam16; InterP 95.5 0.027 5.9E-07 42.8 4.8 51 27-81 60-110 (127)
109 PF00684 DnaJ_CXXCXGXG: DnaJ c 90.9 0.14 3E-06 34.2 1.6 21 171-203 46-66 (66)
110 PF13446 RPT: A repeated domai 87.0 1.3 2.9E-05 28.9 4.1 26 26-51 6-31 (62)
111 PF11833 DUF3353: Protein of u 86.4 1.8 3.8E-05 35.4 5.3 38 34-79 1-38 (194)
112 KOG0724 Zuotin and related mol 84.9 0.99 2.1E-05 39.9 3.5 54 36-89 3-60 (335)
113 COG1107 Archaea-specific RecJ- 82.0 2 4.4E-05 40.6 4.3 7 195-201 97-103 (715)
114 PF14687 DUF4460: Domain of un 81.7 4.1 9E-05 30.2 5.2 48 35-82 4-55 (112)
115 COG1107 Archaea-specific RecJ- 78.0 1.5 3.3E-05 41.4 2.1 12 195-206 55-66 (715)
116 COG5552 Uncharacterized conser 68.3 19 0.00042 24.6 5.1 35 24-58 2-36 (88)
117 PF07709 SRR: Seven Residue Re 64.7 4.2 9.1E-05 18.4 1.0 13 67-79 2-14 (14)
118 PF12725 DUF3810: Protein of u 61.9 35 0.00077 30.0 7.1 58 24-81 81-149 (318)
119 KOG2813 Predicted molecular ch 61.2 8.7 0.00019 33.7 3.0 22 193-214 256-277 (406)
120 PF12434 Malate_DH: Malate deh 60.2 14 0.0003 20.1 2.6 17 39-55 10-26 (28)
121 PF10041 DUF2277: Uncharacteri 55.9 62 0.0013 22.2 5.8 35 25-59 3-37 (78)
122 KOG0712 Molecular chaperone (D 54.8 16 0.00034 32.5 3.7 26 132-157 249-274 (337)
123 KOG2824 Glutaredoxin-related p 54.5 15 0.00034 31.5 3.4 40 162-206 231-275 (281)
124 cd03031 GRX_GRX_like Glutaredo 53.2 15 0.00032 28.6 2.9 41 161-205 100-145 (147)
125 CHL00185 ycf59 magnesium-proto 51.7 24 0.00051 31.2 4.2 59 21-79 246-305 (351)
126 COG0178 UvrA Excinuclease ATPa 49.6 19 0.00041 35.8 3.6 37 172-215 736-773 (935)
127 TIGR02029 AcsF magnesium-proto 48.2 38 0.00083 29.8 4.9 67 13-79 232-299 (337)
128 PRK00349 uvrA excinuclease ABC 47.2 17 0.00036 37.0 2.9 39 170-213 742-781 (943)
129 PF04246 RseC_MucC: Positive r 45.7 34 0.00073 25.9 3.9 24 207-230 40-63 (135)
130 cd01047 ACSF Aerobic Cyclase S 44.3 37 0.0008 29.7 4.2 38 21-58 230-267 (323)
131 PF07172 GRP: Glycine rich pro 43.6 25 0.00054 25.2 2.6 11 1-11 1-11 (95)
132 KOG3442 Uncharacterized conser 43.0 41 0.00089 25.4 3.7 33 28-60 62-94 (132)
133 TIGR00630 uvra excinuclease AB 40.8 16 0.00036 37.0 1.8 40 170-215 740-779 (924)
134 PRK13654 magnesium-protoporphy 39.6 39 0.00085 30.0 3.7 59 21-79 250-309 (355)
135 PLN02508 magnesium-protoporphy 34.7 59 0.0013 28.8 4.0 37 21-57 246-282 (357)
136 PRK10862 SoxR reducing system 34.4 93 0.002 24.3 4.8 21 208-228 48-68 (154)
137 COG5216 Uncharacterized conser 34.3 40 0.00086 21.9 2.2 17 140-156 30-46 (67)
138 PF07739 TipAS: TipAS antibiot 33.9 51 0.0011 23.8 3.1 52 32-92 51-104 (118)
139 cd01388 SOX-TCF_HMG-box SOX-TC 33.5 49 0.0011 21.9 2.7 39 45-88 15-53 (72)
140 PF07092 DUF1356: Protein of u 33.3 16 0.00034 30.8 0.3 14 195-208 40-53 (238)
141 PF07295 DUF1451: Protein of u 32.8 42 0.00092 26.1 2.6 14 194-207 131-144 (146)
142 cd00084 HMG-box High Mobility 32.3 48 0.001 20.9 2.5 40 44-88 13-52 (66)
143 TIGR00757 RNaseEG ribonuclease 31.7 35 0.00075 31.3 2.2 16 193-208 390-405 (414)
144 cd01390 HMGB-UBF_HMG-box HMGB- 31.6 51 0.0011 21.0 2.5 39 46-89 15-53 (66)
145 TIGR03180 UraD_2 OHCU decarbox 29.6 2.1E+02 0.0045 22.5 6.1 26 34-59 30-66 (158)
146 TIGR03829 YokU_near_AblA uncha 29.5 72 0.0016 22.7 3.0 31 195-228 1-31 (89)
147 TIGR00310 ZPR1_znf ZPR1 zinc f 29.1 2.5E+02 0.0054 22.9 6.6 20 210-229 80-100 (192)
148 KOG0527 HMG-box transcription 28.2 59 0.0013 28.9 3.0 38 46-88 77-114 (331)
149 PRK13798 putative OHCU decarbo 28.2 2.2E+02 0.0049 22.5 6.1 43 34-76 40-109 (166)
150 COG0089 RplW Ribosomal protein 28.1 52 0.0011 23.6 2.2 20 30-49 25-44 (94)
151 PF08792 A2L_zn_ribbon: A2L zi 27.9 54 0.0012 18.6 1.8 10 196-205 6-15 (33)
152 PRK14714 DNA polymerase II lar 27.3 72 0.0016 33.4 3.7 27 142-168 641-675 (1337)
153 COG1470 Predicted membrane pro 27.1 84 0.0018 29.3 3.8 27 207-233 444-471 (513)
154 PF03833 PolC_DP2: DNA polymer 26.0 22 0.00049 35.3 0.0 61 145-205 638-704 (900)
155 COG2879 Uncharacterized small 25.7 1.4E+02 0.003 19.8 3.6 25 46-72 28-52 (65)
156 PRK04023 DNA polymerase II lar 25.4 56 0.0012 33.4 2.6 24 144-167 609-633 (1121)
157 PF11213 DUF3006: Protein of u 25.3 43 0.00094 22.4 1.3 13 215-227 30-42 (71)
158 cd01389 MATA_HMG-box MATA_HMG- 24.8 91 0.002 20.8 2.9 40 44-88 14-53 (77)
159 PF09285 Elong-fact-P_C: Elong 24.8 75 0.0016 20.5 2.2 19 210-228 29-47 (56)
160 PF03820 Mtc: Tricarboxylate c 24.5 1.5E+02 0.0033 26.0 4.9 54 33-86 44-123 (308)
161 TIGR03831 YgiT_finger YgiT-typ 23.9 1.2E+02 0.0027 17.6 3.1 20 196-215 1-20 (46)
162 PRK00635 excinuclease ABC subu 23.7 34 0.00074 37.2 0.8 34 170-208 1611-1645(1809)
163 CHL00030 rpl23 ribosomal prote 22.9 77 0.0017 22.6 2.3 20 30-49 23-42 (93)
164 smart00841 Elong-fact-P_C Elon 22.8 76 0.0016 20.4 2.0 19 210-228 29-47 (56)
165 PF12677 DUF3797: Domain of un 21.1 98 0.0021 19.3 2.1 20 194-213 14-33 (49)
166 KOG3960 Myogenic helix-loop-he 21.0 69 0.0015 27.3 1.9 16 65-80 127-142 (284)
167 PRK11712 ribonuclease G; Provi 20.9 56 0.0012 30.7 1.5 26 31-56 139-164 (489)
168 PRK11032 hypothetical protein; 20.7 1E+02 0.0022 24.4 2.8 14 194-207 143-156 (160)
169 cd08694 C2_Dock-A C2 domains f 20.6 1.9E+02 0.0042 23.7 4.4 22 208-229 69-90 (196)
170 PTZ00043 cytochrome c oxidase 20.5 2.2E+02 0.0048 23.9 4.7 49 28-79 83-132 (268)
171 PHA03420 E4 protein; Provision 20.2 1.1E+02 0.0025 22.9 2.7 27 204-230 109-135 (137)
172 PRK00810 nifW nitrogenase stab 20.2 1.4E+02 0.0031 22.1 3.3 14 24-37 18-31 (113)
173 PF15178 TOM_sub5: Mitochondri 20.1 1.3E+02 0.0028 18.6 2.5 24 28-51 2-25 (51)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-61 Score=420.29 Aligned_cols=214 Identities=37% Similarity=0.627 Sum_probs=183.9
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCC
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG 101 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~ 101 (237)
++.+|||+||||+++||.+|||+||||||++||||+|+.+++|+++|++|++||||||||+||++||+||+.++++...+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 35789999999999999999999999999999999999877899999999999999999999999999999998732222
Q ss_pred CCCCCCccCChhhhhhhccCCCCC--CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC---------
Q 026559 102 GGRGGGMGVNIQDIFSSFFGGGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--------- 169 (237)
Q Consensus 102 ~~~~~~~~~~~~d~F~~fFg~~~~--~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~--------- 169 (237)
+++.++|+.++.|||++|||++.. .+.+++++|.|+++.|+|||+|||.|++++|.+++. .|..|+|+
T Consensus 81 g~g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~ 160 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPK 160 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCC
Confidence 211233333789999999975542 234457899999999999999999999999999986 58899887
Q ss_pred --ccccccceEEEEEecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCC
Q 026559 170 --RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 170 --~~C~g~G~v~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
++|+|+|.+...+.. |++++.+ +++|+.|+|.|++++.++++|+||+|+.+|++|+++|+|++..
T Consensus 161 tC~tC~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~ 239 (371)
T COG0484 161 TCPTCNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGP 239 (371)
T ss_pred cCCCCCCcCeEEEEEee-eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCC
Confidence 568999988776543 6555433 8999999999999999999999999999999999999999987
Q ss_pred C
Q 026559 236 N 236 (237)
Q Consensus 236 ~ 236 (237)
|
T Consensus 240 ~ 240 (371)
T COG0484 240 N 240 (371)
T ss_pred C
Confidence 5
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-50 Score=359.69 Aligned_cols=210 Identities=30% Similarity=0.494 Sum_probs=170.9
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
.+|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||+|||||+||++||+||+++++...+.++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~ 81 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSS 81 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCc
Confidence 5799999999999999999999999999999999975 458999999999999999999999999999987653211000
Q ss_pred CCCCc----------c-CChhhhhhhccCCCCCCCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC--
Q 026559 104 RGGGM----------G-VNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-- 169 (237)
Q Consensus 104 ~~~~~----------~-~~~~d~F~~fFg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~-- 169 (237)
+.+++ + .++.|+|++|||++.. ...++.+|.|+++.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 82 ~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~-~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~ 160 (372)
T PRK14296 82 NFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKS-DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGA 160 (372)
T ss_pred CCCccccccccccccccccchhhhhhhcCCCcc-CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCcc
Confidence 00010 0 1456889999985421 12345689999999999999999999999999886 68889886
Q ss_pred ---------ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEE
Q 026559 170 ---------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFI 227 (237)
Q Consensus 170 ---------~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l 227 (237)
+.|+|+|.++.. +++|.++++.+ .++|+.|+|.+++.+.++++|.||+|+++|++|+|
T Consensus 161 ~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 240 (372)
T PRK14296 161 ESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKL 240 (372)
T ss_pred CCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEE
Confidence 468899987655 66664443221 78899999999999999999999999999999999
Q ss_pred eeecccCC
Q 026559 228 KFKCDWQI 235 (237)
Q Consensus 228 ~g~g~~~~ 235 (237)
+|+|++..
T Consensus 241 ~g~G~~~~ 248 (372)
T PRK14296 241 SQKGHASL 248 (372)
T ss_pred eccccCCC
Confidence 99999764
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-50 Score=358.94 Aligned_cols=206 Identities=31% Similarity=0.563 Sum_probs=168.7
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
..|||+||||+++||.+|||+|||+||++||||+++.+++|+++|++|++||+||+||++|++||+||+++++...+
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~--- 78 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA--- 78 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC---
Confidence 57999999999999999999999999999999999866679999999999999999999999999999987653211
Q ss_pred CCCCcc---CChhhhhhhccCCCCC-CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC---------
Q 026559 104 RGGGMG---VNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--------- 169 (237)
Q Consensus 104 ~~~~~~---~~~~d~F~~fFg~~~~-~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~--------- 169 (237)
++.+|. .++.++|+.|||++.. ....++.+|.|+.+.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 79 ~~~~~~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 158 (369)
T PRK14288 79 SQSDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALET 158 (369)
T ss_pred CccccccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcC
Confidence 111121 1344678888874321 112234679999999999999999999999999986 68889886
Q ss_pred -ccccccceEEEEEecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCC
Q 026559 170 -RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 170 -~~C~g~G~v~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+.|+|.|.+...+ |++++.+ .++|+.|.|.+++.+.++++|.||||+++|++|+|+|+|++..
T Consensus 159 C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~ 234 (369)
T PRK14288 159 CKQCNGQGQVFMRQ---GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYE 234 (369)
T ss_pred CCCCCCCcEEEEEe---ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCC
Confidence 4688899776555 5554332 7889999999999999999999999999999999999999754
No 4
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-49 Score=353.82 Aligned_cols=210 Identities=35% Similarity=0.620 Sum_probs=172.7
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
.+|||+||||+++|+.+|||+|||+||++||||+++.+++|+++|++|++||++|+||.+|..||+||+++++...+.++
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 47999999999999999999999999999999999877778999999999999999999999999999987753211101
Q ss_pred --CC-CCcc---CChhhhhhhccCCCCCC-CccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC------
Q 026559 104 --RG-GGMG---VNIQDIFSSFFGGGPME-EDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------ 169 (237)
Q Consensus 104 --~~-~~~~---~~~~d~F~~fFg~~~~~-~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~------ 169 (237)
++ .+++ .++.|+|++|||++.+. ....+.+|.|+.+.|.|||||+|+|++++|.+++. +|..|.|+
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 161 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGT 161 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCC
Confidence 11 1111 24678999999863211 11234689999999999999999999999999986 58889886
Q ss_pred -----ccccccceEEEEEecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecc
Q 026559 170 -----RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCD 232 (237)
Q Consensus 170 -----~~C~g~G~v~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~ 232 (237)
+.|+|+|.+.. ++|++++.. .++|+.|+|.+++.+.++++|+||||+++|++|+|+|+|+
T Consensus 162 ~~~~C~~C~G~G~~~~---~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~ 238 (365)
T PRK14285 162 SPSICNMCNGSGRVMQ---GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGS 238 (365)
T ss_pred CCccCCCccCceeEEe---cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccc
Confidence 45788887654 457764332 7899999999999999999999999999999999999999
Q ss_pred cCCC
Q 026559 233 WQIN 236 (237)
Q Consensus 233 ~~~~ 236 (237)
+..|
T Consensus 239 ~~~~ 242 (365)
T PRK14285 239 VNPD 242 (365)
T ss_pred cCCC
Confidence 8764
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-49 Score=354.45 Aligned_cols=211 Identities=32% Similarity=0.504 Sum_probs=171.9
Q ss_pred CCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCC
Q 026559 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (237)
Q Consensus 23 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~ 102 (237)
..+|||+||||+++|+.+|||+|||+||++||||+++. ..|+++|++|++||++|+||.+|++||+||+++++...+..
T Consensus 3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~ 81 (377)
T PRK14298 3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAE 81 (377)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcc
Confidence 35799999999999999999999999999999999975 45889999999999999999999999999998765321110
Q ss_pred C--CCCCccCChhhhhhhccCCCCCCCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC----------
Q 026559 103 G--RGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK---------- 169 (237)
Q Consensus 103 ~--~~~~~~~~~~d~F~~fFg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~---------- 169 (237)
+ +++++ .++.|+|++|||++.......+.+|.|+.+.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 82 ~~~~~~~~-~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~ 160 (377)
T PRK14298 82 DIFRGADF-GGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKR 160 (377)
T ss_pred cccccCCc-CcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCc
Confidence 0 11112 1467899999986421112335689999999999999999999999999986 58889875
Q ss_pred -ccccccceEEEEEecCceeEEee-------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCC
Q 026559 170 -RRCNCRNEVYHKQIGPGMFQQMT-------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 170 -~~C~g~G~v~~~~~~~g~~~~~~-------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+.|+|.|.++..+..|+.+++.+ .++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++..
T Consensus 161 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~ 240 (377)
T PRK14298 161 CPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGS 240 (377)
T ss_pred CCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCC
Confidence 46889998776644454333322 7889999999999999999999999999999999999999854
No 6
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-49 Score=354.88 Aligned_cols=210 Identities=33% Similarity=0.606 Sum_probs=172.0
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
.+|||+||||+++|+.+|||+|||+||++||||+++.+.+|+++|++|++||+||+||.+|++||+||+++++...++++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 57999999999999999999999999999999999877779999999999999999999999999999988753211111
Q ss_pred CC--CCcc---CChhhhhhhccCCCCC-----CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC---
Q 026559 104 RG--GGMG---VNIQDIFSSFFGGGPM-----EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--- 169 (237)
Q Consensus 104 ~~--~~~~---~~~~d~F~~fFg~~~~-----~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~--- 169 (237)
.+ .++. .++.|+|++|||++.+ .....+.+|.|+++.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~ 162 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGAS 162 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcC
Confidence 11 1111 2567999999985321 111234689999999999999999999999999986 58889885
Q ss_pred --------ccccccceEEEEEecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEee
Q 026559 170 --------RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKF 229 (237)
Q Consensus 170 --------~~C~g~G~v~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g 229 (237)
+.|+|.|.+...+ |++++.+ .++|+.|+|.+++.+.++++|.||+|+++|++|+|+|
T Consensus 163 ~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g 239 (372)
T PRK14286 163 KGSSPTTCPDCGGSGQIRRTQ---GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSG 239 (372)
T ss_pred CCCCCccCCCCcCeEEEEEEe---ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECC
Confidence 4578888766554 5554322 6889999999999999999999999999999999999
Q ss_pred ecccCCC
Q 026559 230 KCDWQIN 236 (237)
Q Consensus 230 ~g~~~~~ 236 (237)
+|++..|
T Consensus 240 ~G~~~~~ 246 (372)
T PRK14286 240 EGEAGPN 246 (372)
T ss_pred ccccCCC
Confidence 9998654
No 7
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-49 Score=352.68 Aligned_cols=212 Identities=33% Similarity=0.564 Sum_probs=173.0
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHhhcccccccccccccccccccccCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~ 102 (237)
.+|||+||||+++|+.+|||+|||+||++||||+++.+ .+|+++|++|++||++|+||.+|++||+||.+++.......
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 57999999999999999999999999999999999754 56899999999999999999999999999988764321110
Q ss_pred CCCCC-cc---CCh-----hhhhhhccCCCCC--CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC-
Q 026559 103 GRGGG-MG---VNI-----QDIFSSFFGGGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK- 169 (237)
Q Consensus 103 ~~~~~-~~---~~~-----~d~F~~fFg~~~~--~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~- 169 (237)
+++++ +. .++ .|+|++|||++.+ .....+.+|+|+++.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G 162 (369)
T PRK14282 83 ESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTG 162 (369)
T ss_pred CCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccC
Confidence 11111 11 011 2789999985321 111234679999999999999999999999999986 58889885
Q ss_pred ----------ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEE
Q 026559 170 ----------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSF 226 (237)
Q Consensus 170 ----------~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~ 226 (237)
+.|+|.|.++.. +++||++++.+ .++|+.|+|.+++.+.++++|.||+|+.+|++|+
T Consensus 163 ~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 242 (369)
T PRK14282 163 VEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLR 242 (369)
T ss_pred CCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEE
Confidence 468899987654 78889887654 6789999999999999999999999999999999
Q ss_pred EeeecccCC
Q 026559 227 IKFKCDWQI 235 (237)
Q Consensus 227 l~g~g~~~~ 235 (237)
|+|+|++..
T Consensus 243 ~~g~G~~~~ 251 (369)
T PRK14282 243 ITGGGNAGY 251 (369)
T ss_pred EecccCCCC
Confidence 999999754
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-49 Score=351.62 Aligned_cols=209 Identities=29% Similarity=0.515 Sum_probs=173.7
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
..|||+||||+++|+.+|||+|||+||++||||+++. ++|+++|++|++||++|+||.+|++||+||+++++...++ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~-~ 80 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGG-G 80 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCC-C
Confidence 4799999999999999999999999999999999975 4588999999999999999999999999999877532111 1
Q ss_pred CCCCccCChhhhhhhccCCCCCC-CccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC-----------c
Q 026559 104 RGGGMGVNIQDIFSSFFGGGPME-EDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-----------R 170 (237)
Q Consensus 104 ~~~~~~~~~~d~F~~fFg~~~~~-~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~-----------~ 170 (237)
++++|+ ++.|+|++|||++... ....+.+|.|+.+.|.|||||+|+|++++|.+++. .|..|.|+ +
T Consensus 81 ~~~~f~-~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~ 159 (371)
T PRK14287 81 GAGDFG-GFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCS 159 (371)
T ss_pred CCcccc-chHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccC
Confidence 112222 4678999999864211 11234589999999999999999999999999986 58889875 4
Q ss_pred cccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCC
Q 026559 171 RCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 171 ~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
.|+|+|.+... ++++|++++.+ .++|+.|.|.+++.+.++++|.||+|+++|++|+|+|+|++..
T Consensus 160 ~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~ 237 (371)
T PRK14287 160 HCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGV 237 (371)
T ss_pred CCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCC
Confidence 68899987655 67888886543 6789999999999999999999999999999999999999864
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-49 Score=352.25 Aligned_cols=211 Identities=33% Similarity=0.596 Sum_probs=175.1
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCC-C
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG-G 102 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~-~ 102 (237)
.+|||+||||+++|+.+|||+|||+||++||||+++.. .|+++|++|++||++|+||.+|++||+||+++++...++ .
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~ 81 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP-GAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGA 81 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCC
Confidence 57999999999999999999999999999999999854 488999999999999999999999999999887532111 0
Q ss_pred -C-CC----CCccCChhhhhhhccCCCCC-CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC-----
Q 026559 103 -G-RG----GGMGVNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----- 169 (237)
Q Consensus 103 -~-~~----~~~~~~~~d~F~~fFg~~~~-~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~----- 169 (237)
+ ++ .++ .++.|+|++|||++.. .....+++|.|+.+.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 82 ~~~~~~~~~~~~-~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~ 160 (380)
T PRK14276 82 GGFGGFDGSGGF-GGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPG 160 (380)
T ss_pred CCCCCccccccc-cchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCC
Confidence 0 00 111 2567899999985321 112334689999999999999999999999999986 58889876
Q ss_pred ------ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeee
Q 026559 170 ------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFK 230 (237)
Q Consensus 170 ------~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~ 230 (237)
+.|+|+|.+... ++++|++++.+ +++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+
T Consensus 161 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~ 240 (380)
T PRK14276 161 TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQ 240 (380)
T ss_pred CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEecc
Confidence 458889987655 67788887644 78899999999999999999999999999999999999
Q ss_pred cccCCC
Q 026559 231 CDWQIN 236 (237)
Q Consensus 231 g~~~~~ 236 (237)
|++..|
T Consensus 241 G~~~~~ 246 (380)
T PRK14276 241 GEAGFN 246 (380)
T ss_pred ccCCCC
Confidence 998654
No 10
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.4e-49 Score=351.08 Aligned_cols=212 Identities=34% Similarity=0.586 Sum_probs=174.1
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
.+|||+||||+++|+.+|||+|||+||++||||+++.+ .|+++|++|++||++|+||.+|++||+||+++++...+.++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 81 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE-GADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGG 81 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCC
Confidence 47999999999999999999999999999999999754 48899999999999999999999999999987753211111
Q ss_pred -CCCCc--cCChhhhhhhccCCCCCC-CccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC---------
Q 026559 104 -RGGGM--GVNIQDIFSSFFGGGPME-EDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--------- 169 (237)
Q Consensus 104 -~~~~~--~~~~~d~F~~fFg~~~~~-~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~--------- 169 (237)
++.+| ++++.|+|++|||++... ....+++|.|+.+.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 82 ~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 161 (376)
T PRK14280 82 FGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKE 161 (376)
T ss_pred CCCCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCc
Confidence 10111 115678999999853211 11234689999999999999999999999999986 58889876
Q ss_pred --ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccC
Q 026559 170 --RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 170 --~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+.|+|+|.+... +.++|++++.. .++|+.|+|.|++.+.++++|.||+|+++|++|+|+|+|++.
T Consensus 162 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~ 241 (376)
T PRK14280 162 TCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPG 241 (376)
T ss_pred cCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCC
Confidence 458889987655 67778876543 688999999999999999999999999999999999999986
Q ss_pred CC
Q 026559 235 IN 236 (237)
Q Consensus 235 ~~ 236 (237)
.+
T Consensus 242 ~~ 243 (376)
T PRK14280 242 VN 243 (376)
T ss_pred CC
Confidence 53
No 11
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.8e-49 Score=349.44 Aligned_cols=211 Identities=36% Similarity=0.551 Sum_probs=171.9
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
.+|||+||||+++|+.+|||+|||+||++||||++++ ++|+++|++|++||++|+||.+|++||+||++........++
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g 80 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGG 80 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCC
Confidence 3799999999999999999999999999999999984 558999999999999999999999999999863321100000
Q ss_pred CCCCccCChhhhhhhccCCCCCC-C-ccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC-----------
Q 026559 104 RGGGMGVNIQDIFSSFFGGGPME-E-DEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------- 169 (237)
Q Consensus 104 ~~~~~~~~~~d~F~~fFg~~~~~-~-~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~----------- 169 (237)
.+++|+ ++.|+|++|||++... . ...+++|.|+++.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 81 ~~~~f~-~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C 159 (378)
T PRK14278 81 FGGGFG-GLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTC 159 (378)
T ss_pred CCcCcC-chhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceec
Confidence 011221 4678999999854211 1 1234689999999999999999999999999986 58889886
Q ss_pred ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCCC
Q 026559 170 RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQIN 236 (237)
Q Consensus 170 ~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~~ 236 (237)
+.|+|+|.+... +.++|++++.+ .++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.+|
T Consensus 160 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~ 239 (378)
T PRK14278 160 DTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPG 239 (378)
T ss_pred CCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCC
Confidence 458899987655 56667775433 78899999999999999999999999999999999999998764
No 12
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-48 Score=349.76 Aligned_cols=212 Identities=34% Similarity=0.624 Sum_probs=174.2
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
..|||+||||+++|+.+|||+|||+||++||||+++.+++|+++|++|++||++|+||.+|++||+||+++++...+.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 47999999999999999999999999999999999877779999999999999999999999999999988753211110
Q ss_pred CC-CCcc----CChhhhhhhccCCCC-C--CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC-----
Q 026559 104 RG-GGMG----VNIQDIFSSFFGGGP-M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----- 169 (237)
Q Consensus 104 ~~-~~~~----~~~~d~F~~fFg~~~-~--~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~----- 169 (237)
++ +++. .++.|+|++|||++. + .....+.+|.|+++.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 162 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPG 162 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCC
Confidence 01 1111 146799999998531 1 112234689999999999999999999999999986 58889875
Q ss_pred ------ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeee
Q 026559 170 ------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFK 230 (237)
Q Consensus 170 ------~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~ 230 (237)
+.|+|.|.+... +.++|++++.. .++|+.|+|.|++.+.++++|.||+|+++|++|+|+|+
T Consensus 163 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~ 242 (380)
T PRK14297 163 TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQ 242 (380)
T ss_pred CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecC
Confidence 468889977654 67778765533 67899999999999999999999999999999999999
Q ss_pred cccCC
Q 026559 231 CDWQI 235 (237)
Q Consensus 231 g~~~~ 235 (237)
|++..
T Consensus 243 G~~~~ 247 (380)
T PRK14297 243 GEHGK 247 (380)
T ss_pred ccCCC
Confidence 99864
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-48 Score=349.27 Aligned_cols=213 Identities=34% Similarity=0.574 Sum_probs=173.2
Q ss_pred CCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccC-C
Q 026559 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAA-G 101 (237)
Q Consensus 23 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~-~ 101 (237)
..+|||+||||+++|+.+|||+|||+||++||||+++.+++|+++|++|++||++|+||.+|+.||+||+++++.... .
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ 82 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence 357999999999999999999999999999999999877778999999999999999999999999999987753211 1
Q ss_pred CC---CC---CCcc---CChhhhhhhccCCC----CCCCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCC
Q 026559 102 GG---RG---GGMG---VNIQDIFSSFFGGG----PMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAP 167 (237)
Q Consensus 102 ~~---~~---~~~~---~~~~d~F~~fFg~~----~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~ 167 (237)
++ ++ +++. .++.|+|++||++. .......+.+|.|+++.|.|||||+|+|++++|.+++. .|..|.
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~ 162 (386)
T PRK14277 83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCK 162 (386)
T ss_pred CCcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCC
Confidence 00 01 1111 13456777777631 11111234689999999999999999999999999986 577887
Q ss_pred CC-----------ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCc
Q 026559 168 GK-----------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQ 223 (237)
Q Consensus 168 G~-----------~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~ 223 (237)
|+ +.|+|.|.+... +++||++++.+ .++|+.|+|.+++.+.++++|.||+|+++|+
T Consensus 163 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 242 (386)
T PRK14277 163 GSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQ 242 (386)
T ss_pred CCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCc
Confidence 75 458889987654 78889887654 7889999999999999999999999999999
Q ss_pred EEEEeeecccCC
Q 026559 224 VSFIKFKCDWQI 235 (237)
Q Consensus 224 ~i~l~g~g~~~~ 235 (237)
+|+|+|+|+..+
T Consensus 243 ~i~~~g~G~~~~ 254 (386)
T PRK14277 243 MITLRGEGEPGI 254 (386)
T ss_pred EEEEccccccCC
Confidence 999999999854
No 14
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-48 Score=348.32 Aligned_cols=211 Identities=28% Similarity=0.444 Sum_probs=166.6
Q ss_pred CCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccccccccccccc-C-
Q 026559 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHA-A- 100 (237)
Q Consensus 23 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~-~- 100 (237)
..+|||+||||+++|+.+|||+|||+||++||||+++.+++|+++|++|++||++|+||+||++||+||+.+..... +
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~ 86 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR 86 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence 46899999999999999999999999999999999987777999999999999999999999999999874321100 0
Q ss_pred ---CCCCCCCc-------cC---------------ChhhhhhhccCCCCC-CCccccccCCceEEEEcccHHHHhcCcee
Q 026559 101 ---GGGRGGGM-------GV---------------NIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSL 154 (237)
Q Consensus 101 ---~~~~~~~~-------~~---------------~~~d~F~~fFg~~~~-~~~~~~~kg~di~~~l~vtLee~~~G~~~ 154 (237)
++++.++| .. ++.++|+.|||++.. .....+.+|.|+++.|.|||||+|+|+++
T Consensus 87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~ 166 (392)
T PRK14279 87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTM 166 (392)
T ss_pred cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEE
Confidence 00000010 01 134667777764321 11233468999999999999999999999
Q ss_pred EEEeeee-eecCCCCC-----------ccccccceEEEEEecCceeEEee------------eccCCCCCCceEEEeeEE
Q 026559 155 KVWREKN-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYF 210 (237)
Q Consensus 155 ~i~~~~~-v~~~c~G~-----------~~C~g~G~v~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~ 210 (237)
+|.+++. .|..|.|+ +.|+|+|.+...+ |++++.. .++|+.|.|.+++++.++
T Consensus 167 ~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~ 243 (392)
T PRK14279 167 PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ---GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRT 243 (392)
T ss_pred EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe---cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeee
Confidence 9999886 58889886 4688888776654 3332221 789999999999999999
Q ss_pred EEEEecCCCCCCcEEEEeeecccCCC
Q 026559 211 VTVDIEKGMQDGQVSFIKFKCDWQIN 236 (237)
Q Consensus 211 ~~V~Ip~G~~~G~~i~l~g~g~~~~~ 236 (237)
++|.||+|+++|++|+|+|+|+..+|
T Consensus 244 ~~V~Ip~G~~~G~~i~~~g~G~~~~~ 269 (392)
T PRK14279 244 INVRIPPGVEDGQRIRLAGQGEAGLR 269 (392)
T ss_pred eEEEeCCCCCCCcEEEEeCCccCCCC
Confidence 99999999999999999999998754
No 15
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=1.1e-48 Score=351.80 Aligned_cols=199 Identities=35% Similarity=0.615 Sum_probs=167.3
Q ss_pred CCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCC
Q 026559 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (237)
Q Consensus 23 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~ 102 (237)
..+|||+||||+++||.+|||+|||+||++||||++++ .++|++|++||++|+||.+|++||+||++++....
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~--- 98 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE--- 98 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC---
Confidence 36899999999999999999999999999999999862 37999999999999999999999999988764210
Q ss_pred CCCCCccCChhhhhhhccCCCCCCCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC----------cc
Q 026559 103 GRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------RR 171 (237)
Q Consensus 103 ~~~~~~~~~~~d~F~~fFg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~----------~~ 171 (237)
++ .++.++|+.|||++.. ....++|.|+.+.|.|||||+|+|++++|.+++. +|..|.|+ +.
T Consensus 99 --~~---~d~~d~f~~~Fggg~~--~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~ 171 (421)
T PTZ00037 99 --QP---ADASDLFDLIFGGGRK--PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKL 171 (421)
T ss_pred --CC---cchhhhHHHhhccccc--cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCC
Confidence 11 1678999999986421 1234679999999999999999999999999986 58889886 46
Q ss_pred ccccceEEE-EEecCceeEEee---------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCC
Q 026559 172 CNCRNEVYH-KQIGPGMFQQMT---------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 172 C~g~G~v~~-~~~~~g~~~~~~---------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
|+|+|.++. +++++ ++++++ .++|+.|+|.+++.+.++++|.||||+++|++|+|+|+||+..
T Consensus 172 C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~ 250 (421)
T PTZ00037 172 CNGQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKP 250 (421)
T ss_pred CCCCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCC
Confidence 889997544 46666 443332 3789999999999999999999999999999999999999864
Q ss_pred C
Q 026559 236 N 236 (237)
Q Consensus 236 ~ 236 (237)
+
T Consensus 251 ~ 251 (421)
T PTZ00037 251 N 251 (421)
T ss_pred C
Confidence 3
No 16
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.2e-48 Score=343.76 Aligned_cols=209 Identities=35% Similarity=0.630 Sum_probs=170.4
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
.+|||+||||+++|+.+|||+|||+||++||||+++.++.|+++|++|++||++|+||.+|+.||+||++++....+.++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 57999999999999999999999999999999999876668999999999999999999999999999987753211111
Q ss_pred -CC-CCccCChhhhhhhccCCCCCCCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC-----------
Q 026559 104 -RG-GGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------- 169 (237)
Q Consensus 104 -~~-~~~~~~~~d~F~~fFg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~----------- 169 (237)
++ .+|...+.++|+.|||++.+.....+.+|.|+.+.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 83 ~~~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C 162 (371)
T PRK10767 83 FGGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTC 162 (371)
T ss_pred CCCccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccC
Confidence 01 12222256788888875321122335689999999999999999999999999986 58889875
Q ss_pred ccccccceEEEEEecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCC
Q 026559 170 RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 170 ~~C~g~G~v~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+.|+|+|.+...+ |++++.+ .++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|++..
T Consensus 163 ~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 237 (371)
T PRK10767 163 PTCHGAGQVRMQQ---GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGE 237 (371)
T ss_pred CCCCCeeEEEEee---ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCC
Confidence 4588888776555 5554322 6789999999999999999999999999999999999999854
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-47 Score=341.62 Aligned_cols=209 Identities=32% Similarity=0.544 Sum_probs=169.6
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
.+|||+||||+++|+.+|||+|||+||++||||+++.+++|+++|++|++||++|+||.+|+.||+||+++++...+.++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g 82 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG 82 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence 58999999999999999999999999999999999877778999999999999999999999999999987753211100
Q ss_pred CCC--CccCChhhhhhhccCCCCC--CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC---------
Q 026559 104 RGG--GMGVNIQDIFSSFFGGGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--------- 169 (237)
Q Consensus 104 ~~~--~~~~~~~d~F~~fFg~~~~--~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~--------- 169 (237)
..+ .+-..+.|+|+.|||++.. ....++.+|.|+.+.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 83 ~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 162 (373)
T PRK14301 83 FSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPE 162 (373)
T ss_pred cccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCc
Confidence 000 0001346788988873211 112335689999999999999999999999999886 58889875
Q ss_pred --ccccccceEEEEEecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCC
Q 026559 170 --RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 170 --~~C~g~G~v~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+.|+|+|.+...+ |++++.. .++|+.|+|.+++.+.++++|+||+|+++|++|+|+|+|++..
T Consensus 163 ~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 239 (373)
T PRK14301 163 TCRHCGGSGQVRQSQ---GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGV 239 (373)
T ss_pred ccCCccCeeEEEEEe---eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCC
Confidence 4588888776544 5554432 7889999999999999999999999999999999999999754
No 18
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-48 Score=336.00 Aligned_cols=199 Identities=45% Similarity=0.738 Sum_probs=169.5
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
...||+||||+++||.+|||+|||+||++||||+|+. +.++|++|++||||||||++|.+||+||+++++...
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~---- 75 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG---- 75 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC----
Confidence 5789999999999999999999999999999999986 569999999999999999999999999999985322
Q ss_pred CCCCccCChhhhhhhccCCCCCCCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC----------ccc
Q 026559 104 RGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------RRC 172 (237)
Q Consensus 104 ~~~~~~~~~~d~F~~fFg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~----------~~C 172 (237)
++++++ . |++||+.+.. +.+.+.+|.|+++.|+|||||+|.|.+.++.++++ +|..|+|. +.|
T Consensus 76 ~~~g~~-~----f~~~F~~g~~-~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C 149 (337)
T KOG0712|consen 76 GGGGFG-G----FSQFFGFGGN-GGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTC 149 (337)
T ss_pred CCCCCc-c----HHHhccCCCc-CccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCC
Confidence 222221 2 7777774332 23334459999999999999999999999999997 57788775 457
Q ss_pred cccceE-EEEEecCceeEEee---------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCC
Q 026559 173 NCRNEV-YHKQIGPGMFQQMT---------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 173 ~g~G~v-~~~~~~~g~~~~~~---------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+|+|.. .+.+++||+.++++ ++.|+.|.|.+++...+.++|.|++|++++++|.++|++|+..
T Consensus 150 ~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~ 228 (337)
T KOG0712|consen 150 RGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAP 228 (337)
T ss_pred CCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecC
Confidence 888864 46699999988765 7899999999999999999999999999999999999998753
No 19
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-47 Score=344.32 Aligned_cols=209 Identities=34% Similarity=0.560 Sum_probs=168.2
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCC-CC
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG-GG 103 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~-~~ 103 (237)
.|||+||||+++|+.+|||+|||+||++||||++++++.|+++|++|++||++|+||.+|+.||+||++++....+. ++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 48999999999999999999999999999999998777799999999999999999999999999998876422110 00
Q ss_pred CC-CC-----------cc---CChhhhhhhccCCCC---C-C-CccccccCCceEEEEcccHHHHhcCceeEEEeeee-e
Q 026559 104 RG-GG-----------MG---VNIQDIFSSFFGGGP---M-E-EDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-V 162 (237)
Q Consensus 104 ~~-~~-----------~~---~~~~d~F~~fFg~~~---~-~-~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v 162 (237)
++ ++ |+ ..+.|+|+.|||+.. . . ....+.+|.|+.+.|.|||||+|+|+++++.+++. .
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~ 160 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS 160 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence 00 00 11 012478889997521 1 1 11234679999999999999999999999999886 5
Q ss_pred ecCCCCC-----------ccccccceEEEEEecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCC
Q 026559 163 IKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGM 219 (237)
Q Consensus 163 ~~~c~G~-----------~~C~g~G~v~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~ 219 (237)
|..|.|+ +.|+|+|.++..+ |++++.. .++|+.|+|.+++.+.++++|.||||+
T Consensus 161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~ 237 (391)
T PRK14284 161 CDACSGSGANSSQGIKVCDRCKGSGQVVQSR---GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGV 237 (391)
T ss_pred CCCCcccccCCCCCCeecCccCCeeEEEEEe---ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCC
Confidence 8889776 4588888776554 5554322 788999999999999999999999999
Q ss_pred CCCcEEEEeeecccCCC
Q 026559 220 QDGQVSFIKFKCDWQIN 236 (237)
Q Consensus 220 ~~G~~i~l~g~g~~~~~ 236 (237)
++|++|+|+|+||+..+
T Consensus 238 ~~G~~i~~~g~G~~~~~ 254 (391)
T PRK14284 238 DSGMRLKMEGYGDAGQN 254 (391)
T ss_pred CCCCEEEEeccccCCCC
Confidence 99999999999998764
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.2e-48 Score=342.20 Aligned_cols=208 Identities=35% Similarity=0.587 Sum_probs=170.1
Q ss_pred CCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCC
Q 026559 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (237)
Q Consensus 23 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~ 102 (237)
..+|||+||||+++|+.+|||+|||+||++||||+++.+++|+++|++|++||++|+||.+|++||+||+++++....
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~-- 79 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGF-- 79 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCC--
Confidence 358999999999999999999999999999999999877678999999999999999999999999999988753111
Q ss_pred CCCCCcc---CChhhhhhhccC-CCCC--CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC------
Q 026559 103 GRGGGMG---VNIQDIFSSFFG-GGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------ 169 (237)
Q Consensus 103 ~~~~~~~---~~~~d~F~~fFg-~~~~--~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~------ 169 (237)
++.+++. .++.|+|++||| ++.. .....+.+|.|+++.|.|||||+|+|++++|.+++. .|..|.|+
T Consensus 80 ~~~~~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 159 (366)
T PRK14294 80 SGFSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGT 159 (366)
T ss_pred CCcCccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCC
Confidence 1101121 145689999998 3211 111234679999999999999999999999999986 58889875
Q ss_pred -----ccccccceEEEEEecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecc
Q 026559 170 -----RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCD 232 (237)
Q Consensus 170 -----~~C~g~G~v~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~ 232 (237)
+.|+|.|.+...+ |++++.+ .++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|+
T Consensus 160 ~~~~C~~C~G~G~~~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 236 (366)
T PRK14294 160 SPTTCPQCGGSGQVTQSQ---GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGE 236 (366)
T ss_pred CcccCCCcCCeEEEEEEe---eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCcc
Confidence 4578888765443 5554322 7889999999999999999999999999999999999999
Q ss_pred cCC
Q 026559 233 WQI 235 (237)
Q Consensus 233 ~~~ 235 (237)
+.+
T Consensus 237 ~~~ 239 (366)
T PRK14294 237 AGV 239 (366)
T ss_pred CCC
Confidence 864
No 21
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4e-47 Score=341.02 Aligned_cols=213 Identities=38% Similarity=0.618 Sum_probs=171.1
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCC-C
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG-G 102 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~-~ 102 (237)
.+|||+||||+++|+.+|||+|||+||++||||+++.+.+|+++|++|++||++|+||.+|+.||+||+++++..... +
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 479999999999999999999999999999999998776789999999999999999999999999999887532111 1
Q ss_pred CCC-CCccCChhhhh---hhccCCCC--------------CCC-c----cccccCCceEEEEcccHHHHhcCceeEEEee
Q 026559 103 GRG-GGMGVNIQDIF---SSFFGGGP--------------MEE-D----EKIVKGDDVIVELDATLEDLYMGGSLKVWRE 159 (237)
Q Consensus 103 ~~~-~~~~~~~~d~F---~~fFg~~~--------------~~~-~----~~~~kg~di~~~l~vtLee~~~G~~~~i~~~ 159 (237)
+++ ++...++.++| ++|||++. +.. . ..+.+|.|+++.|.|||||+|+|++++|.++
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 110 00011445555 57887521 000 0 1124689999999999999999999999999
Q ss_pred ee-eecCCCCC----------ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEe
Q 026559 160 KN-VIKPAPGK----------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDI 215 (237)
Q Consensus 160 ~~-v~~~c~G~----------~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~I 215 (237)
+. .|..|.|+ +.|+|.|.+... +.++|++++.+ +++|+.|+|.+++.++++++|+|
T Consensus 162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 241 (397)
T PRK14281 162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTV 241 (397)
T ss_pred eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEec
Confidence 86 57788875 468899987655 66778775533 78899999999999999999999
Q ss_pred cCCCCCCcEEEEeeecccCCC
Q 026559 216 EKGMQDGQVSFIKFKCDWQIN 236 (237)
Q Consensus 216 p~G~~~G~~i~l~g~g~~~~~ 236 (237)
|+|+++|++|+|+|+|++.++
T Consensus 242 p~G~~~G~~i~~~g~G~~~~~ 262 (397)
T PRK14281 242 PAGVQDGNYLTLRGQGNAGPR 262 (397)
T ss_pred CCCCCCCCEEEEecccccCCC
Confidence 999999999999999998653
No 22
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=3.5e-47 Score=337.63 Aligned_cols=208 Identities=37% Similarity=0.614 Sum_probs=172.4
Q ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCCCC
Q 026559 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRG 105 (237)
Q Consensus 26 ~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~~ 105 (237)
|||+||||+++|+.+|||+|||+||++||||+++ +.+|+++|++|++||++|+||.+|+.||+||+++++......+++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~ 79 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGG 79 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCC
Confidence 7999999999999999999999999999999997 444889999999999999999999999999998775321110100
Q ss_pred -C-----CccCChhhhhhhccCCCCCC---CccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC------
Q 026559 106 -G-----GMGVNIQDIFSSFFGGGPME---EDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------ 169 (237)
Q Consensus 106 -~-----~~~~~~~d~F~~fFg~~~~~---~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~------ 169 (237)
. ++ .++.++|++|||++.+. ....+.++.|+.+.|.|||||+|+|+++++.+++. +|..|.|+
T Consensus 80 ~~~~~~~~~-~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 158 (354)
T TIGR02349 80 FNGFDIGFF-GDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGT 158 (354)
T ss_pred cCCccccCc-CchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCC
Confidence 1 11 24678999999853211 12345689999999999999999999999999986 57889875
Q ss_pred -----ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeec
Q 026559 170 -----RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKC 231 (237)
Q Consensus 170 -----~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g 231 (237)
+.|+|+|.+... +++||++++.+ .++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G 238 (354)
T TIGR02349 159 DPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKG 238 (354)
T ss_pred CCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCc
Confidence 468889987655 78899987644 678999999999999999999999999999999999999
Q ss_pred ccCC
Q 026559 232 DWQI 235 (237)
Q Consensus 232 ~~~~ 235 (237)
++..
T Consensus 239 ~~~~ 242 (354)
T TIGR02349 239 NAGE 242 (354)
T ss_pred cCCC
Confidence 9753
No 23
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.4e-47 Score=338.70 Aligned_cols=208 Identities=32% Similarity=0.576 Sum_probs=167.4
Q ss_pred CCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccc----ccccccccc
Q 026559 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT----YGEEGLKQH 98 (237)
Q Consensus 23 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~----~G~~~~~~~ 98 (237)
+.+|||+||||+++|+.+|||+|||+||++||||+++.+.+|+++|++|++||++|+||.+|++||+ ||++++...
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 3589999999999999999999999999999999998776799999999999999999999999999 998877521
Q ss_pred cCCC-CCC------------------CCccCChhhhhhhccCCCCCCCccccccCCceEEEEcccHHHHhcCceeEEEee
Q 026559 99 AAGG-GRG------------------GGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWRE 159 (237)
Q Consensus 99 ~~~~-~~~------------------~~~~~~~~d~F~~fFg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~ 159 (237)
...+ +++ ++++..+.|+|+.|||++. ...++++|.|+++.|.|||||+|+|++++|.++
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~--~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~ 164 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGG--RRTQPRRGADVESEVTLSFTEAIDGATVPLRLT 164 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCC--CCCCCCCCCCEEEEEEEEHHHHhCCceEEEEee
Confidence 1000 000 0011124567777776431 123346899999999999999999999999999
Q ss_pred ee-eecCCCCC-----------ccccccceEEEEEecCceeEEee------------eccCCCCCCceEEEeeEEEEEEe
Q 026559 160 KN-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDI 215 (237)
Q Consensus 160 ~~-v~~~c~G~-----------~~C~g~G~v~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~I 215 (237)
+. +|..|.|+ +.|+|+|.+...+ |++++.. .++|+.|.|.+++.+.++++|.|
T Consensus 165 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~I 241 (389)
T PRK14295 165 SQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS---GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRI 241 (389)
T ss_pred ccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe---cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEe
Confidence 86 58889876 4578888776655 3333222 78899999999999999999999
Q ss_pred cCCCCCCcEEEEeeecccCC
Q 026559 216 EKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 216 p~G~~~G~~i~l~g~g~~~~ 235 (237)
|+|+++|++|+|+|+|++..
T Consensus 242 p~G~~~G~~i~l~g~G~~~~ 261 (389)
T PRK14295 242 PAGVSDGQRIRLRGKGAPGE 261 (389)
T ss_pred CCCCCCCCEEEEcccccCCC
Confidence 99999999999999999754
No 24
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-46 Score=336.47 Aligned_cols=208 Identities=34% Similarity=0.578 Sum_probs=165.1
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
.+|||+||||+++|+.+|||+|||+||++||||+++. +.|+++|++|++||++|+||.+|++||+||++++....+..+
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 80 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ 80 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence 5799999999999999999999999999999999986 448899999999999999999999999999987653211111
Q ss_pred CCCCc----cCChhhhhhhcc---CCC--CC------CC---ccccccCCceEEEEcccHHHHhcCceeEEEeeee-eec
Q 026559 104 RGGGM----GVNIQDIFSSFF---GGG--PM------EE---DEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIK 164 (237)
Q Consensus 104 ~~~~~----~~~~~d~F~~fF---g~~--~~------~~---~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~ 164 (237)
+..++ ..++.++|++|| |.+ .+ .. ...+.+|.|+.+.|.|||||+|+|++++|.+++. .|.
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 160 (382)
T PRK14291 81 GQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCE 160 (382)
T ss_pred cccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCC
Confidence 11111 125667777773 211 00 00 1224579999999999999999999999999886 588
Q ss_pred CCCCC-----------ccccccceEEEEEecCceeEEee-----------eccCCCCCCceEEEeeEEEEEEecCCCCCC
Q 026559 165 PAPGK-----------RRCNCRNEVYHKQIGPGMFQQMT-----------EQVCDQCQNVKYEREGYFVTVDIEKGMQDG 222 (237)
Q Consensus 165 ~c~G~-----------~~C~g~G~v~~~~~~~g~~~~~~-----------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G 222 (237)
.|.|+ +.|+|+|.++..+ |++++.. .++|+.|+|.+++.+.++++|+||||+++|
T Consensus 161 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G 237 (382)
T PRK14291 161 ACGGTGYDPGSGEKVCPTCGGSGEIYQRG---GFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPGVDNG 237 (382)
T ss_pred CCccccCCCCCCCccCCCCCCceEEEEec---ceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCCCCCCC
Confidence 88875 4688888766553 4443322 788999999999999999999999999999
Q ss_pred cEEEEeeecccCC
Q 026559 223 QVSFIKFKCDWQI 235 (237)
Q Consensus 223 ~~i~l~g~g~~~~ 235 (237)
++|+|+|+||+..
T Consensus 238 ~~i~~~g~G~~~~ 250 (382)
T PRK14291 238 SKLRVPGKGHAGR 250 (382)
T ss_pred CEEEEecCcCCCC
Confidence 9999999999865
No 25
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-46 Score=333.88 Aligned_cols=207 Identities=33% Similarity=0.515 Sum_probs=167.9
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcH-HHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE-EANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
.|||+||||+++|+.+|||+|||+||++||||+++.+. +|+++|++|++||++|+||.+|++||+||+.+++...++ .
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~-~ 81 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSN-F 81 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCC-c
Confidence 79999999999999999999999999999999998653 689999999999999999999999999999877521110 0
Q ss_pred CCCCc--cCChhhhhhhccCCCC------C--CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC---
Q 026559 104 RGGGM--GVNIQDIFSSFFGGGP------M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--- 169 (237)
Q Consensus 104 ~~~~~--~~~~~d~F~~fFg~~~------~--~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~--- 169 (237)
+.+++ -.++.|+|+.|||+.. + .....++++.|+++.|.|||||+|+|++++|.+++. +|..|.|+
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~ 161 (365)
T PRK14290 82 NWDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAK 161 (365)
T ss_pred cccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCC
Confidence 00111 0267799999998521 0 011112348999999999999999999999999886 57788775
Q ss_pred -------ccccccceEEEEEecCceeEEee--------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEe
Q 026559 170 -------RRCNCRNEVYHKQIGPGMFQQMT--------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIK 228 (237)
Q Consensus 170 -------~~C~g~G~v~~~~~~~g~~~~~~--------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~ 228 (237)
+.|+|.|.+...+ .+|++.++. .++|+.|+|.+++.+.++++|.||||+++|++|+|+
T Consensus 162 ~~~~~~C~~C~G~G~~~~~~-~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~ 240 (365)
T PRK14290 162 NGKLITCPTCHGTGQQRIVR-GQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVK 240 (365)
T ss_pred CCCCccCCCCCCcCEEEEEe-ccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEc
Confidence 4688899766554 567764321 789999999999999999999999999999999999
Q ss_pred eeccc
Q 026559 229 FKCDW 233 (237)
Q Consensus 229 g~g~~ 233 (237)
|+|++
T Consensus 241 g~G~~ 245 (365)
T PRK14290 241 GKGQS 245 (365)
T ss_pred cccCC
Confidence 99985
No 26
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.6e-46 Score=333.03 Aligned_cols=211 Identities=34% Similarity=0.575 Sum_probs=169.1
Q ss_pred CCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCC
Q 026559 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (237)
Q Consensus 23 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~ 102 (237)
..+|||++|||+++|+.+|||+|||+||++||||+++.+++|+++|++|++||++|+||.+|++||+||+++++...+.+
T Consensus 3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14289 3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGG 82 (386)
T ss_pred ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCC
Confidence 46899999999999999999999999999999999987777999999999999999999999999999998765321111
Q ss_pred C-CCCCccCChhhhhhhc---cCCC---C------C--CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCC
Q 026559 103 G-RGGGMGVNIQDIFSSF---FGGG---P------M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPA 166 (237)
Q Consensus 103 ~-~~~~~~~~~~d~F~~f---Fg~~---~------~--~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c 166 (237)
+ ++.++ ++.++|+.| |++. . . .....+.+|.|+++.|.|||||+|+|++++|++++. .|..|
T Consensus 83 ~~~~~~~--~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C 160 (386)
T PRK14289 83 GFSGEGM--SMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC 160 (386)
T ss_pred CCCCCCc--ChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence 1 11111 344444333 5421 0 0 011224578999999999999999999999999986 58888
Q ss_pred CCC-----------ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCC
Q 026559 167 PGK-----------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDG 222 (237)
Q Consensus 167 ~G~-----------~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G 222 (237)
.|+ +.|+|.|.++.. +.++|++++.. .++|+.|.|.|++.+.++++|.||+|+++|
T Consensus 161 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 240 (386)
T PRK14289 161 HGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEG 240 (386)
T ss_pred CCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCC
Confidence 776 468899987655 77778875433 678999999999999999999999999999
Q ss_pred cEEEEeeecccCC
Q 026559 223 QVSFIKFKCDWQI 235 (237)
Q Consensus 223 ~~i~l~g~g~~~~ 235 (237)
++|+|+|+|+...
T Consensus 241 ~~i~l~g~G~~~~ 253 (386)
T PRK14289 241 MQLSMNGKGNAGK 253 (386)
T ss_pred CEEEEeccccCCC
Confidence 9999999999764
No 27
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.5e-46 Score=330.88 Aligned_cols=209 Identities=33% Similarity=0.551 Sum_probs=169.0
Q ss_pred CCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCC
Q 026559 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (237)
Q Consensus 23 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~ 102 (237)
..+|||++|||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|++||+||++++......+
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~ 81 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQED 81 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccc
Confidence 46899999999999999999999999999999999985 45899999999999999999999999999988764211000
Q ss_pred --CC-C-----CCccCChhhhhhhc-cCCCCCCCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC---
Q 026559 103 --GR-G-----GGMGVNIQDIFSSF-FGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--- 169 (237)
Q Consensus 103 --~~-~-----~~~~~~~~d~F~~f-Fg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~--- 169 (237)
.. . .++..++.++|+.| ||++. ...+.+|.|+.++|.|||||+|+|+++++.+++. .|..|.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~---~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~ 158 (378)
T PRK14283 82 IFNNINFEDIFQGFGFGIGNIFDMFGFGGGS---RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAE 158 (378)
T ss_pred cccccCccccccccccchhhhccccccCCCC---CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccC
Confidence 00 0 11111344666666 65421 1234689999999999999999999999999886 57788875
Q ss_pred --------ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEe
Q 026559 170 --------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIK 228 (237)
Q Consensus 170 --------~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~ 228 (237)
+.|+|.|.+... ++++|++++.. .++|..|+|.+++.+.++++|.||+|+++|++|+|+
T Consensus 159 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~ 238 (378)
T PRK14283 159 PGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVS 238 (378)
T ss_pred CCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEe
Confidence 458889987655 77788875443 678999999999999999999999999999999999
Q ss_pred eecccCC
Q 026559 229 FKCDWQI 235 (237)
Q Consensus 229 g~g~~~~ 235 (237)
|+|+...
T Consensus 239 g~G~~~~ 245 (378)
T PRK14283 239 GEGEMGD 245 (378)
T ss_pred ccccCCC
Confidence 9998753
No 28
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-45 Score=328.58 Aligned_cols=210 Identities=33% Similarity=0.506 Sum_probs=171.9
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCCC
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGR 104 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 104 (237)
.|||+||||+++|+.+|||+|||+||++||||+++. ..|+++|++|++||++|+||.+|+.||+||+++.... ..+++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~-~~~~~ 79 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGM-PGGDP 79 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccc-cCCcc
Confidence 489999999999999999999999999999999984 4588999999999999999999999999998763211 01011
Q ss_pred CCCccCChhhhhhhccCCCC-C--CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC-----------
Q 026559 105 GGGMGVNIQDIFSSFFGGGP-M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------- 169 (237)
Q Consensus 105 ~~~~~~~~~d~F~~fFg~~~-~--~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~----------- 169 (237)
.++++.++.++|+.|||++. . ....++.+|.|+.+.+.|||+|+|+|+++++.+++. .|..|.|+
T Consensus 80 ~~~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~ 159 (371)
T PRK14292 80 FGGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKT 159 (371)
T ss_pred cCccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCcc
Confidence 01222367799999998642 1 111234689999999999999999999999999985 68889875
Q ss_pred -ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCC
Q 026559 170 -RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 170 -~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+.|+|+|.+... +..+|++++.. .++|+.|.|.+++.+.++++|.||+|+.+|++|+|+|+|++..
T Consensus 160 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~ 239 (371)
T PRK14292 160 CPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGP 239 (371)
T ss_pred CCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCC
Confidence 358889977644 56668876433 7899999999999999999999999999999999999999865
Q ss_pred C
Q 026559 236 N 236 (237)
Q Consensus 236 ~ 236 (237)
|
T Consensus 240 ~ 240 (371)
T PRK14292 240 G 240 (371)
T ss_pred C
Confidence 4
No 29
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-45 Score=328.71 Aligned_cols=208 Identities=30% Similarity=0.562 Sum_probs=163.8
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccC-CC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAA-GG 102 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~-~~ 102 (237)
.+|||+||||+++|+.+|||+|||+||++||||+++. ..++++|++|++||++|+|+.+|+.||+||+++++...+ ++
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 80 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGG 80 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCC
Confidence 3799999999999999999999999999999999974 348899999999999999999999999999987753211 00
Q ss_pred -CCCCCccCChhh----hhhhccCCCCCCCc-cccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC------
Q 026559 103 -GRGGGMGVNIQD----IFSSFFGGGPMEED-EKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------ 169 (237)
Q Consensus 103 -~~~~~~~~~~~d----~F~~fFg~~~~~~~-~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~------ 169 (237)
++.++|..++.+ +|+.|||++..... ..+.+|.|+.+.|.|||+|+|+|++++|.+++. .|..|.|+
T Consensus 81 ~g~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~ 160 (372)
T PRK14300 81 GGNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGE 160 (372)
T ss_pred CCCCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCC
Confidence 111122112334 44444443211111 123579999999999999999999999999986 57788885
Q ss_pred -----ccccccceEEEEEecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecc
Q 026559 170 -----RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCD 232 (237)
Q Consensus 170 -----~~C~g~G~v~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~ 232 (237)
+.|+|.|.++..+ |++++.. .++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|+
T Consensus 161 ~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~ 237 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQ---GFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGE 237 (372)
T ss_pred CCccCCCccCeEEEEEee---ceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEecccc
Confidence 4688888776543 6655322 7899999999999999999999999999999999999999
Q ss_pred cCC
Q 026559 233 WQI 235 (237)
Q Consensus 233 ~~~ 235 (237)
+.+
T Consensus 238 ~~~ 240 (372)
T PRK14300 238 AGI 240 (372)
T ss_pred CCC
Confidence 864
No 30
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.1e-45 Score=324.97 Aligned_cols=209 Identities=33% Similarity=0.537 Sum_probs=170.7
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
..|||+||||+++|+.+|||+|||+||++||||+++.. .|+++|++|++||++|+||.+|++||.||+++++...+ .+
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~-~~ 79 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP-GAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAG-FP 79 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-CHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCC-cC
Confidence 47999999999999999999999999999999999754 48899999999999999999999999999887652111 01
Q ss_pred CCCCccCChhhhhhhccCCC-C-C-----CCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC------
Q 026559 104 RGGGMGVNIQDIFSSFFGGG-P-M-----EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------ 169 (237)
Q Consensus 104 ~~~~~~~~~~d~F~~fFg~~-~-~-----~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~------ 169 (237)
..+++ .++.++|++|||+. . + .....+.++.|+.+.|.|||||+|+|+++++.+++. .|..|.|+
T Consensus 80 ~~~~~-~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~ 158 (374)
T PRK14293 80 DMGDM-GGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGT 158 (374)
T ss_pred Ccccc-cchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCC
Confidence 00111 14568899999631 1 1 011234578999999999999999999999999986 58888775
Q ss_pred -----ccccccceEEEE-EecCceeEEee------------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeec
Q 026559 170 -----RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKC 231 (237)
Q Consensus 170 -----~~C~g~G~v~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g 231 (237)
+.|+|.|.+... +++||++++.. +++|+.|.|.+++.+.++++|.||+|+++|++|+|+|+|
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G 238 (374)
T PRK14293 159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEG 238 (374)
T ss_pred CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCc
Confidence 458899987655 67888887543 678999999999999999999999999999999999999
Q ss_pred ccCC
Q 026559 232 DWQI 235 (237)
Q Consensus 232 ~~~~ 235 (237)
+...
T Consensus 239 ~~~~ 242 (374)
T PRK14293 239 DAGL 242 (374)
T ss_pred cCCC
Confidence 9754
No 31
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-42 Score=293.44 Aligned_cols=217 Identities=51% Similarity=0.850 Sum_probs=184.8
Q ss_pred HHHHHHhHhhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccc
Q 026559 13 CALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGE 92 (237)
Q Consensus 13 ~~~~~~~~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 92 (237)
+++.+.......+|||+||||+++|+..|||+||||||++||||+|++++.|.+.|++|+.||||||||++|+.||+||+
T Consensus 4 ~~~~~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 4 LKLSGAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hhhhhhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 34444555777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCccCChhhhhhhccCCC-----CCCCccccccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCC
Q 026559 93 EGLKQHAAGGGRGGGMGVNIQDIFSSFFGGG-----PMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAP 167 (237)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~F~~fFg~~-----~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~ 167 (237)
+++....-.+.++++ . .++|+.||+.- .........+|.++...++.+++++|.|...+....+.|...|+
T Consensus 84 egL~~~~~~~~~g~~---~-~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~ 159 (336)
T KOG0713|consen 84 EGLKDENKDGEGGGG---G-NDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAP 159 (336)
T ss_pred hhhcccccccccCCc---c-cchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeecC
Confidence 999754311111111 1 45566666521 11223447789999999999999999999988888888888999
Q ss_pred CCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeeccc
Q 026559 168 GKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 168 G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
|+..|+++-.+..++.++|.+++.+...|..|++.+....+.+.++.+..|+..+.....-.+|..
T Consensus 160 g~~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (336)
T KOG0713|consen 160 GTRKCNCRLEMFTQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEP 225 (336)
T ss_pred cccccCChhhheeeccCCChhhhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCc
Confidence 999999999999999999999999999999999999999999999999999999999888777654
No 32
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-36 Score=261.19 Aligned_cols=161 Identities=42% Similarity=0.637 Sum_probs=129.5
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccccccccccccc-CC-
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHA-AG- 101 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~-~~- 101 (237)
..|||+||||+++||.+|||+|||+||++||||+++. ..++++|++|++||++|+||.+|+.||+||++++.... +.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~ 81 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPP 81 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCC
Confidence 5799999999999999999999999999999999974 45889999999999999999999999999988653211 10
Q ss_pred -CCCC-CCcc----CChhhhhhhccCCCCC-CC--------ccccccCCceEEEEcccHHHHhcCceeEEEeeeeeecCC
Q 026559 102 -GGRG-GGMG----VNIQDIFSSFFGGGPM-EE--------DEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPA 166 (237)
Q Consensus 102 -~~~~-~~~~----~~~~d~F~~fFg~~~~-~~--------~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c 166 (237)
++++ +++. .++.++|++|||+... .+ ...+++|.|+.+.+.|||+|+|.|+++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~------- 154 (291)
T PRK14299 82 PGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA------- 154 (291)
T ss_pred CCCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-------
Confidence 0001 1111 2577899999985211 00 12246799999999999999999999988531
Q ss_pred CCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeeccc
Q 026559 167 PGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 167 ~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
.++++|+||+|+++|++|+|+|+|+.
T Consensus 155 -----------------------------------------g~~~~V~Ip~G~~~G~~ir~~g~G~~ 180 (291)
T PRK14299 155 -----------------------------------------GERLSVRIPPGVREGQVIRLAGKGRQ 180 (291)
T ss_pred -----------------------------------------CEEEEEecCCCcCCCcEEEECCCCCC
Confidence 25789999999999999999999986
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=9.2e-36 Score=259.47 Aligned_cols=177 Identities=29% Similarity=0.415 Sum_probs=135.7
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccccccc----cccccc
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEE----GLKQHA 99 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~----~~~~~~ 99 (237)
.+|||++|||+++|+.+|||+|||+||++||||+++.. .++++|++|++||++|+||.+|+.||+||.. ++....
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~ 81 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQF 81 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccccccc
Confidence 37999999999999999999999999999999998754 4899999999999999999999999999854 222110
Q ss_pred CCCCCCCCc-cCChhhhhhhccCCCCC-CCccccccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccce
Q 026559 100 AGGGRGGGM-GVNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNE 177 (237)
Q Consensus 100 ~~~~~~~~~-~~~~~d~F~~fFg~~~~-~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~ 177 (237)
+. +++..+ ..++.++|+.|||++.. ......++|.|+.+.+.|||+|+|.|+++++.+++.+| .|.|.
T Consensus 82 ~~-~~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~~---------~g~G~ 151 (306)
T PRK10266 82 QH-GDGQSFNAEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVY---------NAFGM 151 (306)
T ss_pred cc-CCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEecccc---------cCCCe
Confidence 10 111111 12677999999985321 11223457899999999999999999999998876543 22221
Q ss_pred EEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCCC
Q 026559 178 VYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQIN 236 (237)
Q Consensus 178 v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~~ 236 (237)
+ .....++++|.||+|+++|++|+|+|+|+...|
T Consensus 152 ~-------------------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~ 185 (306)
T PRK10266 152 I-------------------------EQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGEN 185 (306)
T ss_pred E-------------------------EEeeeEEEEEEECCCCcCCcEEEEecCCcCCCC
Confidence 1 011246899999999999999999999997653
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.1e-32 Score=236.93 Aligned_cols=194 Identities=32% Similarity=0.501 Sum_probs=157.5
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCCC
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGR 104 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 104 (237)
.|||+||||+++|+..|||+||++||++||||.+..+ +|+++|++|.+|||+|+|+++|+.||.+|..+. ++
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~-------~~ 114 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQH-------GE 114 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc-------cc
Confidence 3999999999999999999999999999999999877 599999999999999999999999999987651 11
Q ss_pred CCCccCChhhhhhhccCCCCCCCccccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC-----------ccc
Q 026559 105 GGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-----------RRC 172 (237)
Q Consensus 105 ~~~~~~~~~d~F~~fFg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~-----------~~C 172 (237)
.++ ++.++|..+|++. ..+...+.++.+.+.++|+++..|+++.+.+... .|..|.|. ..|
T Consensus 115 ~~g---~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 187 (288)
T KOG0715|consen 115 FGG---NPFDVFLEFFGGK----MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTC 187 (288)
T ss_pred ccC---CccchHHHhhccc----ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhh
Confidence 111 6888999999872 2233456789999999999999999888877764 68888775 457
Q ss_pred cccceEEEEEecCceeE--E-------eeeccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeeccc
Q 026559 173 NCRNEVYHKQIGPGMFQ--Q-------MTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 173 ~g~G~v~~~~~~~g~~~--~-------~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
.|.|.+......+-.+. . ...+.|..|.|.+.+...+.+.|.||+|+.++.+|++.+.|..
T Consensus 188 ~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~ 257 (288)
T KOG0715|consen 188 SGRGLVSNPKEDPFILYTCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND 257 (288)
T ss_pred hCcccccccccCCcceeecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc
Confidence 78885544322222222 1 1155599999999999999999999999999999999999874
No 35
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3e-22 Score=166.22 Aligned_cols=74 Identities=58% Similarity=0.970 Sum_probs=70.1
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccccccccccc
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 97 (237)
..|+|+|||++++|+.++||||||+|+++||||++++++++.++|++||+||++|+||.+|..||.||+.+++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence 45799999999999999999999999999999999998889999999999999999999999999999888754
No 36
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.8e-21 Score=166.47 Aligned_cols=90 Identities=44% Similarity=0.786 Sum_probs=80.0
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
..|||+||||+++|+..||++|||+.|++||||+||++++|.++|+++.+||+||+|+.+|..||.+|..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~----- 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ----- 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence 689999999999999999999999999999999999999999999999999999999999999999987765322
Q ss_pred CCCCccCChhhhhhhccCC
Q 026559 104 RGGGMGVNIQDIFSSFFGG 122 (237)
Q Consensus 104 ~~~~~~~~~~d~F~~fFg~ 122 (237)
++ .+..++|.+.|++
T Consensus 79 ---~~-~d~~~~~r~~f~~ 93 (296)
T KOG0691|consen 79 ---GR-EDQADGFRKKFGS 93 (296)
T ss_pred ---hh-hhHHHHHHHHhhh
Confidence 11 1677888888875
No 37
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.83 E-value=4e-21 Score=182.56 Aligned_cols=75 Identities=36% Similarity=0.686 Sum_probs=69.6
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccc
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK 96 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 96 (237)
...+.+||+||||+++|+..+||+|||+||++||||+++.+ .|.++|++|++||++||||.+|+.||+||..|++
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 34568999999999999999999999999999999999876 4889999999999999999999999999988765
No 38
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.9e-21 Score=168.37 Aligned_cols=73 Identities=49% Similarity=0.914 Sum_probs=68.4
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcH---HHHHHHHHHHHHHHhhcccccccccccccccccc
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE---EANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK 96 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 96 (237)
+.|||.+|+|+++|+.+|||+||||+++.||||+..++. .|++.|+.|.+||||||||++|.+||.||++|++
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 468999999999999999999999999999999987542 4999999999999999999999999999999987
No 39
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-20 Score=165.09 Aligned_cols=78 Identities=51% Similarity=0.805 Sum_probs=70.2
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHhhcccccccccccccccccccc
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH 98 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~ 98 (237)
....+.||+||||.++|++.+||++||+|||+||||+||.. ++|+++|+.|+.||+|||||..|++||.+-++.+.+.
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 44568899999999999999999999999999999998765 4699999999999999999999999999877666543
No 40
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.78 E-value=8.9e-20 Score=122.92 Aligned_cols=63 Identities=60% Similarity=1.016 Sum_probs=59.5
Q ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcH-HHHHHHHHHHHHHHhhcccccccccc
Q 026559 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE-EANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 26 ~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
|||+||||+++++.++||++|+++++++|||+++.+. .+++.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999987654 68899999999999999999999998
No 41
>PHA03102 Small T antigen; Reviewed
Probab=99.78 E-value=2.7e-19 Score=139.44 Aligned_cols=85 Identities=22% Similarity=0.374 Sum_probs=72.7
Q ss_pred CCcceecCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCC
Q 026559 25 KSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (237)
Q Consensus 25 ~~~y~iLgv~~~a--~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~ 102 (237)
+.+|+||||+++| |.++||+|||++|+++|||++++ .++|++|++||++|+|+.+|..||.+|.+......
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~--- 77 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE--- 77 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCccccccc---
Confidence 4689999999999 99999999999999999999763 36999999999999999999999999977643221
Q ss_pred CCCCCccCChhhhhhhccCCC
Q 026559 103 GRGGGMGVNIQDIFSSFFGGG 123 (237)
Q Consensus 103 ~~~~~~~~~~~d~F~~fFg~~ 123 (237)
. .+.++|..+||+.
T Consensus 78 ----~---~~~~~f~~~fg~~ 91 (153)
T PHA03102 78 ----D---VPSGYVGATFGDR 91 (153)
T ss_pred ----c---cHHHHhhhhcCCc
Confidence 1 4778888888764
No 42
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1e-18 Score=140.88 Aligned_cols=73 Identities=38% Similarity=0.699 Sum_probs=67.2
Q ss_pred CCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccccccccc
Q 026559 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGL 95 (237)
Q Consensus 23 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 95 (237)
...|+||||||+|+++++|||+|||+|++++|||+++...+.++.|..|+.||+.|+|+..|+.|..||+...
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 3579999999999999999999999999999999998755577889999999999999999999999998764
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.1e-19 Score=145.08 Aligned_cols=93 Identities=38% Similarity=0.692 Sum_probs=75.3
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHHHHHHHHhhcccccccccccccccccccc
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQ--GNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH 98 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~--~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~ 98 (237)
....+|+|+||||.++|++.+|++||++||+.+|||+++ ...+|+++|++|+.||.||+|.++|+.||..|.-.-
T Consensus 10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd--- 86 (264)
T KOG0719|consen 10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDD--- 86 (264)
T ss_pred cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCC---
Confidence 445569999999999999999999999999999999995 335699999999999999999999999999886441
Q ss_pred cCCCCCCCCccCChhhhhhhccC
Q 026559 99 AAGGGRGGGMGVNIQDIFSSFFG 121 (237)
Q Consensus 99 ~~~~~~~~~~~~~~~d~F~~fFg 121 (237)
.+ +...+++-++|+.+|-
T Consensus 87 ~~-----~d~~~~~~e~~~~iyk 104 (264)
T KOG0719|consen 87 ES-----GDIDEDWLEFWRAIYK 104 (264)
T ss_pred cc-----chhhhHHHHHHHHHHh
Confidence 00 1111256667777764
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.75 E-value=1.6e-18 Score=148.97 Aligned_cols=79 Identities=46% Similarity=0.735 Sum_probs=69.6
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcH---HHHHHHHHHHHHHHhhccccccccccccccccccc
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE---EANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 97 (237)
.+..+|||+||||.++|+..||.+|||++|.+||||...+.+ .|+++|..|..|-|||+||++|+.||. |++.++.
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~ 468 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP 468 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence 456799999999999999999999999999999999887654 389999999999999999999999996 6666655
Q ss_pred ccC
Q 026559 98 HAA 100 (237)
Q Consensus 98 ~~~ 100 (237)
..+
T Consensus 469 Es~ 471 (504)
T KOG0624|consen 469 ESQ 471 (504)
T ss_pred hhc
Confidence 443
No 45
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.75 E-value=1.3e-18 Score=162.27 Aligned_cols=71 Identities=51% Similarity=0.910 Sum_probs=66.4
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccc
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK 96 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 96 (237)
+|||+||||+++|+.++||+|||+||++||||+++. ..+.++|++|++||++|+||.+|+.||.||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 699999999999999999999999999999999876 45888999999999999999999999999987654
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.8e-17 Score=135.56 Aligned_cols=70 Identities=59% Similarity=0.928 Sum_probs=65.6
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH-HHHHHHHHHHHHHhhccccccccccccc
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE-ANKRFAEINNAYEVLSDSETRNIYDTYG 91 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~r~~yD~~G 91 (237)
....+||+||||+++|+..||++|||++|++||||+++.++. +++.|+.|++||++|+|+.+|..||+++
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 345799999999999999999999999999999999998875 8999999999999999999999999973
No 47
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.72 E-value=1.1e-17 Score=111.09 Aligned_cols=59 Identities=69% Similarity=1.095 Sum_probs=54.3
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHHHhhccccc
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG-NEEANKRFAEINNAYEVLSDSET 83 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~-~~~a~~~f~~i~~Ay~~L~d~~~ 83 (237)
.+||+||||+++++.++||++|+++++++|||+++. ...+++.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999985 45588999999999999999853
No 48
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.3e-17 Score=141.01 Aligned_cols=179 Identities=37% Similarity=0.551 Sum_probs=120.4
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHhhcccccccccccccccccccccCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG 102 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~ 102 (237)
..|||+||+|.++|+.++|++||+++|+++|||+++.+ ..|+++|+++.+||++|+|+.+|..||+||++++.......
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 57999999999999999999999999999999998876 23666899999999999999999999999997666421111
Q ss_pred CC-CCC---c-cCChhhhhhhccCCCCC-C-----------------------------C-----------ccccccCCc
Q 026559 103 GR-GGG---M-GVNIQDIFSSFFGGGPM-E-----------------------------E-----------DEKIVKGDD 136 (237)
Q Consensus 103 ~~-~~~---~-~~~~~d~F~~fFg~~~~-~-----------------------------~-----------~~~~~kg~d 136 (237)
+. ... + ..+..+.|.+|||.... . . .....+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T KOG0714|consen 82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP 161 (306)
T ss_pred CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence 10 111 1 13556677777772110 0 0 001122223
Q ss_pred eEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEEEec
Q 026559 137 VIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIE 216 (237)
Q Consensus 137 i~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip 216 (237)
+.+.+.+++++++.|+.++..+.+...... +...........+.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 207 (306)
T KOG0714|consen 162 VEHPLRVSLEDLYKGESKKMKISRQSFTSN----------------------------------GREGSSRSRYLSISIK 207 (306)
T ss_pred ccCCcceeHHHhccccceeeecccccccCC----------------------------------cccccCccceeEEecc
Confidence 445555588888888887776554322110 0002334567778888
Q ss_pred CCCCCCcEEEEeeecccCCC
Q 026559 217 KGMQDGQVSFIKFKCDWQIN 236 (237)
Q Consensus 217 ~G~~~G~~i~l~g~g~~~~~ 236 (237)
++.+.|+.+....+|+...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~ 227 (306)
T KOG0714|consen 208 PGWKEGTKITFPEEGDEEPG 227 (306)
T ss_pred CCcccccceeccccccccCC
Confidence 88888888888877766543
No 49
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.70 E-value=3.5e-17 Score=106.67 Aligned_cols=55 Identities=69% Similarity=1.113 Sum_probs=51.5
Q ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcc
Q 026559 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80 (237)
Q Consensus 26 ~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d 80 (237)
|||++|||+++++.++||++||++++++|||+++....+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999998645588999999999999986
No 50
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.2e-16 Score=138.34 Aligned_cols=94 Identities=44% Similarity=0.755 Sum_probs=77.4
Q ss_pred hHhhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHhhccccccccccccccccccc
Q 026559 19 LNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (237)
Q Consensus 19 ~~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 97 (237)
+..++.+|||.|||++++|++.|||+|||++|+.+|||++... .+++.+|+++-+||.+|+||.+|..||.- . .+
T Consensus 367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg-~-dl-- 442 (486)
T KOG0550|consen 367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG-Q-DL-- 442 (486)
T ss_pred HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc-c-ch--
Confidence 3467789999999999999999999999999999999999876 67999999999999999999999999961 1 11
Q ss_pred ccCCCCCCCCccCChhhhhhhc
Q 026559 98 HAAGGGRGGGMGVNIQDIFSSF 119 (237)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~F~~f 119 (237)
... +++++++ +|+++|..|
T Consensus 443 e~~-~~~~a~~--dp~~~~~a~ 461 (486)
T KOG0550|consen 443 EEV-GSGGAGF--DPFNIFRAF 461 (486)
T ss_pred hhh-cCCCcCc--Chhhhhhhc
Confidence 111 1222344 888888887
No 51
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.2e-16 Score=129.98 Aligned_cols=86 Identities=38% Similarity=0.613 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHHHhHhh-----CCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhh
Q 026559 4 RRARLLFLLCALCYALNVI-----AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVL 78 (237)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-----~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L 78 (237)
++..++.++++.++++... ...|.|++|||+++++..||.+|||+||+++|||++++.+ +.+.|..|.+||++|
T Consensus 7 ~rw~Lvl~~Llp~l~vgl~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e-~k~~F~~iAtayeil 85 (329)
T KOG0722|consen 7 ERWCLVLILLLPSLFVGLSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE-SKKLFVKIATAYEIL 85 (329)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch-hhhhhhhhhcccccc
Confidence 3333334444444544333 3579999999999999999999999999999999998766 779999999999999
Q ss_pred cccccccccccc
Q 026559 79 SDSETRNIYDTY 90 (237)
Q Consensus 79 ~d~~~r~~yD~~ 90 (237)
.|.+.|..||-.
T Consensus 86 kd~e~rt~ydya 97 (329)
T KOG0722|consen 86 KDNETRTQYDYA 97 (329)
T ss_pred cchhhHHhHHHH
Confidence 999999999953
No 52
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=5.7e-15 Score=118.23 Aligned_cols=65 Identities=26% Similarity=0.461 Sum_probs=57.5
Q ss_pred CCcceecCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcH-----HHHHHHHHHHHHHHhhccccccccccc
Q 026559 25 KSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 25 ~~~y~iLgv~~~--a~~~eIk~ayr~la~~~hPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
.|||++|||++. ++..+|+++||++++++|||+..... .|.+.|..||+||++|+||.+|..|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 489999999996 67899999999999999999975432 256789999999999999999999984
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.53 E-value=6.7e-15 Score=117.15 Aligned_cols=65 Identities=31% Similarity=0.538 Sum_probs=57.2
Q ss_pred CCcceecCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcHH---HHHHHHHHHHHHHhhccccccccccc
Q 026559 25 KSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEE---ANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 25 ~~~y~iLgv~~~--a~~~eIk~ayr~la~~~hPD~~~~~~~---a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
.|||++|||++. ++..+|+++||++++++|||+.....+ +...+..||+||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 589999999996 789999999999999999999875432 34567899999999999999999975
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.51 E-value=2.4e-14 Score=114.55 Aligned_cols=67 Identities=25% Similarity=0.376 Sum_probs=59.5
Q ss_pred CCCCcceecCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcH-----HHHHHHHHHHHHHHhhccccccccccc
Q 026559 23 AGKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 23 ~~~~~y~iLgv~~~--a~~~eIk~ayr~la~~~hPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
...+||++|||++. .+..+|+++||++++++|||+....+ .+.+.|..||+||++|+||.+|..|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 46899999999997 56899999999999999999986543 256789999999999999999999994
No 55
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.5e-14 Score=128.10 Aligned_cols=65 Identities=38% Similarity=0.583 Sum_probs=62.3
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccc
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
..|.|.+|||++++++++||+.|||+|...|||||..+. |+|.|+.|..|||+|+|+.+|..||.
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~-A~Eafk~Lq~Afevig~~~kR~eYd~ 298 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPR-AEEAFKKLQVAFEVIGDSVKRKEYDL 298 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChh-HHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 789999999999999999999999999999999999554 99999999999999999999999995
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.50 E-value=2.7e-14 Score=114.70 Aligned_cols=66 Identities=23% Similarity=0.400 Sum_probs=57.5
Q ss_pred CCCcceecCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcHH-----HHHHHHHHHHHHHhhccccccccccc
Q 026559 24 GKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEE-----ANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 24 ~~~~y~iLgv~~~--a~~~eIk~ayr~la~~~hPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
..|||++|||++. ++..+|+++||++++++|||+...... +.+.+..||+||++|+||.+|..|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 4799999999995 689999999999999999999865433 34456899999999999999999984
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.46 E-value=5.2e-14 Score=104.43 Aligned_cols=52 Identities=29% Similarity=0.486 Sum_probs=46.8
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhc
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLS 79 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~ 79 (237)
..++|+||||+++++.+|||++||+|++++|||+++ +.+.|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG----STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHh
Confidence 358899999999999999999999999999999964 2368999999999985
No 58
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.44 E-value=1.5e-13 Score=121.47 Aligned_cols=89 Identities=31% Similarity=0.581 Sum_probs=73.8
Q ss_pred HHHHHHHHhHh-----hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----cHHHHHHHHHHHHHHHhhcc
Q 026559 11 LLCALCYALNV-----IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG-----NEEANKRFAEINNAYEVLSD 80 (237)
Q Consensus 11 ~~~~~~~~~~~-----~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~-----~~~a~~~f~~i~~Ay~~L~d 80 (237)
+++++++...+ ....|+|||||++.+++..+||++||+|+.|+||||-+. ..+-++.+++|+.||+.|+|
T Consensus 79 ~i~~L~~~I~~~k~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd 158 (610)
T COG5407 79 VISYLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158 (610)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhh
Confidence 34555554433 235799999999999999999999999999999999765 23578999999999999999
Q ss_pred ccccccccccccccccccc
Q 026559 81 SETRNIYDTYGEEGLKQHA 99 (237)
Q Consensus 81 ~~~r~~yD~~G~~~~~~~~ 99 (237)
...|+.|-.||.....+..
T Consensus 159 ~k~renyl~yGtPd~pQht 177 (610)
T COG5407 159 KKRRENYLNYGTPDSPQHT 177 (610)
T ss_pred HHHHHHHHhcCCCCCCccc
Confidence 9999999999987655443
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.39 E-value=3.3e-13 Score=115.46 Aligned_cols=57 Identities=42% Similarity=0.632 Sum_probs=51.0
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----HHHHHHHHHHHHHHHhhccc
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG---N----EEANKRFAEINNAYEVLSDS 81 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~---~----~~a~~~f~~i~~Ay~~L~d~ 81 (237)
.++|++|||++++|.+|||+|||+|+++||||+... + +.|+++|++|++||++|+..
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999642 1 34889999999999999863
No 60
>PHA02624 large T antigen; Provisional
Probab=99.38 E-value=3.6e-13 Score=124.76 Aligned_cols=60 Identities=23% Similarity=0.456 Sum_probs=55.8
Q ss_pred CCCcceecCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccc
Q 026559 24 GKSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIY 87 (237)
Q Consensus 24 ~~~~y~iLgv~~~a--~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~y 87 (237)
.+++|++|||+++| +.++||+|||++|++||||+++ ++++|++|++||++|+|+.++..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 36899999999999 9999999999999999999975 347999999999999999999998
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.12 E-value=7.8e-11 Score=94.33 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=56.2
Q ss_pred CCcceecCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcH-----HHHHHHHHHHHHHHhhcccccccccc
Q 026559 25 KSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 25 ~~~y~iLgv~~~--a~~~eIk~ayr~la~~~hPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
.|||++||+++. .+..++++.|++|.+++|||+..... .|.+.-..||+||.+|+||-+|+.|=
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 589999999995 89999999999999999999975443 25556789999999999999999995
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.06 E-value=2.1e-10 Score=90.62 Aligned_cols=53 Identities=28% Similarity=0.453 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcH-----HHHHHHHHHHHHHHhhccccccccccc
Q 026559 37 ASDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 37 a~~~eIk~ayr~la~~~hPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
.+..+|+++||++++++|||+..... .+.+.|..||+||++|+||.+|+.|+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 47789999999999999999854331 267889999999999999999999985
No 63
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=6.3e-10 Score=92.97 Aligned_cols=71 Identities=35% Similarity=0.488 Sum_probs=61.3
Q ss_pred HhhCCCCcceecCCCC---CCCHHHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHHHHHHHHhhcccccccccccc
Q 026559 20 NVIAGKSYYEVLQVPR---GASDEQIKRAYRKLALKYHPDKNQ--GNEEANKRFAEINNAYEVLSDSETRNIYDTY 90 (237)
Q Consensus 20 ~~~~~~~~y~iLgv~~---~a~~~eIk~ayr~la~~~hPD~~~--~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~ 90 (237)
.-|+..|+|.+|||+. .+++.+|.+|.++.+.+||||+.. ++....+-|+.|+.||++|+|+.+|..||.-
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 4677899999999997 688999999999999999999972 1222557899999999999999999999974
No 64
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.96 E-value=2e-09 Score=101.58 Aligned_cols=69 Identities=7% Similarity=-0.046 Sum_probs=58.3
Q ss_pred CCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEE
Q 026559 134 GDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTV 213 (237)
Q Consensus 134 g~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V 213 (237)
.-+|.+.|.|||+++|+|++++|.+.|.+|+ +.|...+++.++++|
T Consensus 656 ~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----------------------------------g~G~ktvkE~ktLeV 701 (871)
T TIGR03835 656 NVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----------------------------------GNTESTTNEAITLEI 701 (871)
T ss_pred ccceEEecccCHHHHhCCCeEEEEEEEeecc----------------------------------CCCcceeeeeEEEEE
Confidence 4589999999999999999999999887752 122335666789999
Q ss_pred EecCCCCCCcEEEEeeecccCCC
Q 026559 214 DIEKGMQDGQVSFIKFKCDWQIN 236 (237)
Q Consensus 214 ~Ip~G~~~G~~i~l~g~g~~~~~ 236 (237)
+||+|+++|++|+|+|+|+...+
T Consensus 702 kIPpGVkdGqkIRf~GeGDegpg 724 (871)
T TIGR03835 702 QLPITSQLNISAIFKGFGHDFGN 724 (871)
T ss_pred ecCCCCCCCCEEEeccccCCCCC
Confidence 99999999999999999998643
No 65
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=7.5e-10 Score=88.60 Aligned_cols=61 Identities=41% Similarity=0.698 Sum_probs=55.9
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHhhccccccc
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRN 85 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~ 85 (237)
-++|++|.|.|+.+.++||+.||+|++..|||+|+++ +.|...|.-|..||..|-|+.-|.
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rk 114 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRK 114 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4679999999999999999999999999999999988 458999999999999999987544
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=9.1e-08 Score=78.48 Aligned_cols=55 Identities=29% Similarity=0.620 Sum_probs=49.7
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH-hhcc
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYE-VLSD 80 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~-~L~d 80 (237)
..||.||||...|+.++++.||..||+.+|||.....+ ..+.|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a-daa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA-DAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc-cHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999987665 5588999999998 7765
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2e-07 Score=67.33 Aligned_cols=51 Identities=29% Similarity=0.434 Sum_probs=44.4
Q ss_pred ceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccc
Q 026559 28 YEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82 (237)
Q Consensus 28 y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~ 82 (237)
-.||||++.++.+.||+|+||+...+|||+.+++--| ..||||+++|....
T Consensus 59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlA----sKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLA----SKINEAKDLLEGTS 109 (112)
T ss_pred HHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHH----HHHHHHHHHHhccc
Confidence 4699999999999999999999999999999877533 35999999998643
No 68
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.2e-07 Score=90.05 Aligned_cols=52 Identities=44% Similarity=0.663 Sum_probs=44.6
Q ss_pred CCcceecCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhc
Q 026559 25 KSYYEVLQVPRGA----SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLS 79 (237)
Q Consensus 25 ~~~y~iLgv~~~a----~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~ 79 (237)
.+-|+||.|+-+- ..+.||++|+|||.+|||||||. -.++|..+++|||.|+
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHH
Confidence 3569999998632 34789999999999999999984 4489999999999998
No 69
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.08 E-value=5.5e-06 Score=58.13 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=39.5
Q ss_pred ceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEEEe
Q 026559 136 DVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDI 215 (237)
Q Consensus 136 di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~I 215 (237)
|+..++.|||.||..|++++|..- ..+.++|.|
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l-----------------------------------------------~g~~~~i~i 33 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTL-----------------------------------------------DGKTIKIKI 33 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-T-----------------------------------------------TS-EEEEEE
T ss_pred CeEEEEEeCHHHHhCCCEEEEECC-----------------------------------------------CCCEEEEec
Confidence 688999999999999999888411 126889999
Q ss_pred cCCCCCCcEEEEeeecc
Q 026559 216 EKGMQDGQVSFIKFKCD 232 (237)
Q Consensus 216 p~G~~~G~~i~l~g~g~ 232 (237)
|+|+++|++++|+|+|=
T Consensus 34 p~~~~~g~~~~i~g~G~ 50 (81)
T PF01556_consen 34 PPGTQPGQQLRIKGKGM 50 (81)
T ss_dssp TST-STT-EEEETTESE
T ss_pred cCccCCCcEEeecCCCC
Confidence 99999999999999986
No 70
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.90 E-value=2.5e-05 Score=70.67 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=48.6
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
++|.|+.+++.|||+||+.|+++.|.. ......+
T Consensus 275 R~G~DL~~~~~Isl~eAl~G~~~~v~t----------------------------------------------ld~g~~i 308 (391)
T PRK14284 275 RRGDDLILELPIGFVDAALGMKKEIPT----------------------------------------------LLKEGTC 308 (391)
T ss_pred eecCCEEEEEEecHHHHhCCCeEEEee----------------------------------------------cCCCcEE
Confidence 568999999999999999999998841 1112568
Q ss_pred EEEecCCCCCCcEEEEeeecccCC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+|+||+|+++|++++|+|+|....
T Consensus 309 ~v~Ip~g~~~g~~~~i~g~G~p~~ 332 (391)
T PRK14284 309 RLTIPEGIQSGTILKVRGQGFPNV 332 (391)
T ss_pred EEEECCccCCCeEEEECCCCCCCC
Confidence 999999999999999999997643
No 71
>PRK14291 chaperone protein DnaJ; Provisional
Probab=97.90 E-value=2.4e-05 Score=70.51 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=48.6
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+.+.|||+||+.|+++.|..- ....+
T Consensus 272 r~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dG~~l 304 (382)
T PRK14291 272 RRGDNLYLDVNITVAEAVLGTELEVPLL-----------------------------------------------DGKKE 304 (382)
T ss_pred eecCCeEEEEEeeHHHHhCCCEEEEecC-----------------------------------------------CCCEE
Confidence 4689999999999999999999988421 02467
Q ss_pred EEEecCCCCCCcEEEEeeecccCC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+|.||+|+++|++|+|+|+|....
T Consensus 305 ~V~Ip~g~~~G~~i~i~G~G~p~~ 328 (382)
T PRK14291 305 KVKIPPGTKEGDKIRVPGKGMPRL 328 (382)
T ss_pred EEEECCccCCCCEEEECCCCCCCC
Confidence 999999999999999999998654
No 72
>PRK14282 chaperone protein DnaJ; Provisional
Probab=97.88 E-value=2.8e-05 Score=69.83 Aligned_cols=56 Identities=23% Similarity=0.180 Sum_probs=48.1
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
++|.|+.+.+.|||+||+.|.++.|..- ..+.+
T Consensus 273 r~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dG~~i 305 (369)
T PRK14282 273 RSGSDLIYDVTIDYLQAILGTTVEVPLP-----------------------------------------------EGGTT 305 (369)
T ss_pred EecCCEEEEEEeCHHHHhCCCEEEEeCC-----------------------------------------------CCcEE
Confidence 5689999999999999999999888420 12468
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|+||+|+++|++++|+|+|...
T Consensus 306 ~v~Ip~g~~~g~~iri~GkG~p~ 328 (369)
T PRK14282 306 MLKIPPGTQPETVFRLKGKGLPN 328 (369)
T ss_pred EEEeCCCcCCCCEEEECCCCCCC
Confidence 99999999999999999999764
No 73
>PRK14300 chaperone protein DnaJ; Provisional
Probab=97.86 E-value=3.2e-05 Score=69.53 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=48.7
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
++|.|+.+.+.|||.||+.|.++.|..- ....+
T Consensus 262 R~G~Dl~~~~~Isl~~Al~G~~~~i~~l-----------------------------------------------dg~~i 294 (372)
T PRK14300 262 VDGANLHCKLPISFVNAALGGEIEVPVI-----------------------------------------------EGGKV 294 (372)
T ss_pred EecCCEEEEEecCHHHHhCCCEEEEecC-----------------------------------------------CCCEE
Confidence 5689999999999999999999888421 02568
Q ss_pred EEEecCCCCCCcEEEEeeecccCC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+|+||+|+++|++++|+|+|....
T Consensus 295 ~v~Ip~g~~~g~~iri~g~G~p~~ 318 (372)
T PRK14300 295 NLTIPAGTQNGDQLRLRSKGMSKM 318 (372)
T ss_pred EEEECCccCCCcEEEECCCCCCCC
Confidence 999999999999999999998643
No 74
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=97.79 E-value=2.8e-05 Score=62.82 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=39.1
Q ss_pred cccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEe
Q 026559 171 RCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIK 228 (237)
Q Consensus 171 ~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~ 228 (237)
.|+|+|.++.. .++|+.|+|.|+++.+++..+++ .|+.+|++|+++
T Consensus 104 ~C~G~G~~i~~-----------~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 104 RCRGTGLIQRR-----------QRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCCCeeEEecC-----------CCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 37778876542 14899999999999999999999 999999999874
No 75
>PRK14285 chaperone protein DnaJ; Provisional
Probab=97.77 E-value=5.1e-05 Score=68.01 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=48.2
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+...+.|||.||+.|.++.|..- ..+.+
T Consensus 263 R~G~dL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG~~v 295 (365)
T PRK14285 263 RNGKDLYATLPISFTQAALGKEIKIQTI-----------------------------------------------ASKKI 295 (365)
T ss_pred EeccceEEEEecCHHHHhCCCEEEEECC-----------------------------------------------CCCEE
Confidence 5689999999999999999999888421 12578
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|+||+|+++|++++|+|+|...
T Consensus 296 ~V~Ip~g~~~g~~irl~GkG~p~ 318 (365)
T PRK14285 296 KIKIPKGTENDEQIIIKNEGMPI 318 (365)
T ss_pred EEEeCCCcCCCcEEEECCCCccC
Confidence 99999999999999999999864
No 76
>PRK14290 chaperone protein DnaJ; Provisional
Probab=97.73 E-value=7e-05 Score=67.16 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=48.1
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+.+.|||.||+.|.++.|... ..++
T Consensus 267 R~G~DL~~~~~Isl~eAl~G~~~~I~~~------------------------------------------------~g~i 298 (365)
T PRK14290 267 RINDDLYVDQKINFPQAALGGEIEIKLF------------------------------------------------REKY 298 (365)
T ss_pred EecCCEEEEEEeCHHHHhCCCEEEEEcC------------------------------------------------CceE
Confidence 4689999999999999999999888421 1358
Q ss_pred EEEecCCCCCCcEEEEeeecccCC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+|.||+|+++|++++|+|+|....
T Consensus 299 ~V~Ip~g~~~g~~iri~g~G~p~~ 322 (365)
T PRK14290 299 NLKIPEGTQPGEVLKIKGAGMPHL 322 (365)
T ss_pred EEEECCccCCCcEEEECCCCCCCC
Confidence 999999999999999999998653
No 77
>PRK14295 chaperone protein DnaJ; Provisional
Probab=97.72 E-value=6.5e-05 Score=67.89 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=47.7
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+++.|||.||+.|.+++|..- ..+.+
T Consensus 283 R~G~DL~~~~~Isl~eAl~G~~~~I~tl-----------------------------------------------dG~~~ 315 (389)
T PRK14295 283 RSGDNLTVTVPVTFPEAALGAEVRVPTL-----------------------------------------------GGPPV 315 (389)
T ss_pred EecCCEEEEEeecHHHHhCCCeEEEECC-----------------------------------------------CCCEE
Confidence 5689999999999999999999888310 02478
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|+||+|+++|++|+|+|+|...
T Consensus 316 ~v~ip~g~~~g~~iri~G~G~p~ 338 (389)
T PRK14295 316 TVKLPPGTPNGRVLRVRGKGAVR 338 (389)
T ss_pred EEEECCccCCCcEEEECCCCcCC
Confidence 99999999999999999999753
No 78
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.72 E-value=7.8e-05 Score=67.46 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=46.7
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
++|.|+.+.+.|||.||+.|.++.|..- ...+
T Consensus 290 R~G~DL~~~~~Isl~eAl~G~~~~v~~l------------------------------------------------dg~i 321 (392)
T PRK14279 290 RDGDDLTVTVPVSFTELALGSTLSVPTL------------------------------------------------DGPV 321 (392)
T ss_pred eecCcEEEEEEccHHHHcCCceEEEEcC------------------------------------------------CceE
Confidence 5689999999999999999998888310 1237
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|+||+|+++|++|+|+|+|...
T Consensus 322 ~v~Ip~g~~~g~~iri~g~G~p~ 344 (392)
T PRK14279 322 GVKVPAGTADGRILRVRGRGVPK 344 (392)
T ss_pred EEEECCCCCCCCEEEECCCCCCC
Confidence 99999999999999999999763
No 79
>PRK14276 chaperone protein DnaJ; Provisional
Probab=97.64 E-value=0.0001 Score=66.45 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=47.4
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+.+.|||+||+.|.++.|..- ...+
T Consensus 267 R~G~DL~~~~~Isl~eAl~G~~~~v~tl------------------------------------------------dg~i 298 (380)
T PRK14276 267 RDGSTIYYTLPISFVQAALGDTVEVPTV------------------------------------------------HGDV 298 (380)
T ss_pred eecceEEEEEecCHHHHhCCCeEEEEcC------------------------------------------------CCcE
Confidence 5689999999999999999999888421 1237
Q ss_pred EEEecCCCCCCcEEEEeeecccCC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+|+||+|+++|++++|+|+|-...
T Consensus 299 ~v~ip~g~~~g~~~~i~g~G~p~~ 322 (380)
T PRK14276 299 ELKIPAGTQTGKKFRLRGKGAPKL 322 (380)
T ss_pred EEEECCCCCCCCEEEECCCCcCCC
Confidence 899999999999999999997643
No 80
>PRK14294 chaperone protein DnaJ; Provisional
Probab=97.64 E-value=0.00011 Score=66.04 Aligned_cols=56 Identities=21% Similarity=0.172 Sum_probs=47.1
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+.+.|||.||+.|.++.|..- ...+
T Consensus 261 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------------------------------------------------dG~~ 292 (366)
T PRK14294 261 RDGNDVHCKVPISFVQAALGAQIEVPTL------------------------------------------------EGER 292 (366)
T ss_pred ecCCCEEEEEEeCHHHHhCCCeEEEECC------------------------------------------------CCcE
Confidence 5699999999999999999999888410 1125
Q ss_pred EEEecCCCCCCcEEEEeeecccCC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+|.||+|+++|++|+|+|+|....
T Consensus 293 ~v~ip~g~~~g~~iri~G~G~p~~ 316 (366)
T PRK14294 293 ELKIPKGTQPGDIFRFKGKGIPSL 316 (366)
T ss_pred EEEECCCcCCCCEEEECCCCCCCC
Confidence 899999999999999999998643
No 81
>PRK14286 chaperone protein DnaJ; Provisional
Probab=97.61 E-value=0.0001 Score=66.22 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=47.3
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+.+.|||.||+.|.++.|..- ..+.+
T Consensus 267 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG~~i 299 (372)
T PRK14286 267 RQGNDLILVRKISLAQAILGAEIEVPTI-----------------------------------------------DGKKA 299 (372)
T ss_pred EecCCEEEEEEECHHHHhCCCEEEEeCC-----------------------------------------------CCCEE
Confidence 5689999999999999999999888310 12468
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|+||+|+++|++++|+|+|=..
T Consensus 300 ~v~ip~g~~~g~~~ri~G~G~P~ 322 (372)
T PRK14286 300 KMKIPEGTESGQVFRLKGHGMPY 322 (372)
T ss_pred EEEeCCccCCCcEEEECCCCCCC
Confidence 99999999999999999999653
No 82
>PRK14299 chaperone protein DnaJ; Provisional
Probab=97.60 E-value=0.0001 Score=64.11 Aligned_cols=54 Identities=26% Similarity=0.208 Sum_probs=45.9
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
++|.|+.+.+.|||.||+.|+++.|..- ...+
T Consensus 198 R~G~DL~~~~~Isl~eAl~G~~~~v~tl------------------------------------------------dG~~ 229 (291)
T PRK14299 198 LEGDDLYATVDVPAPIAVVGGKVRVMTL------------------------------------------------DGPV 229 (291)
T ss_pred EECCEEEEEEecCHHHHhCCCEEEEECC------------------------------------------------CCCE
Confidence 5689999999999999999999888411 1237
Q ss_pred EEEecCCCCCCcEEEEeeeccc
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
+|+||+|+++|++++|+|+|-.
T Consensus 230 ~v~ip~~~~~g~~~rl~g~G~p 251 (291)
T PRK14299 230 EVTIPPRTQAGRKLRLKGKGWP 251 (291)
T ss_pred EEEeCCCcCCCCEEEECCCCCC
Confidence 8999999999999999999964
No 83
>PRK14278 chaperone protein DnaJ; Provisional
Probab=97.59 E-value=0.00015 Score=65.34 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=47.4
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
++|.|+.+.+.|||.||+.|.++.|..- ....+
T Consensus 260 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------d~~~i 292 (378)
T PRK14278 260 RDGDDLHCTVSVPMVDAALGTTVTVEAI-----------------------------------------------LDGPS 292 (378)
T ss_pred EcCCCEEEEEecCHHHHhcCCeEEEecC-----------------------------------------------CCCeE
Confidence 5689999999999999999999888410 02458
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|.||+|+++|++++|+|+|-..
T Consensus 293 ~v~ip~g~~~g~~lrl~g~G~p~ 315 (378)
T PRK14278 293 EITIPPGTQPGSVITLRGRGMPH 315 (378)
T ss_pred EEEeCCCcCCCcEEEECCCCCCC
Confidence 89999999999999999999754
No 84
>PRK14281 chaperone protein DnaJ; Provisional
Probab=97.58 E-value=0.00012 Score=66.34 Aligned_cols=54 Identities=30% Similarity=0.239 Sum_probs=46.0
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
++|.|+.+.+.|||.||+.|.++.|..- ...+
T Consensus 283 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------------------------------------------------dg~i 314 (397)
T PRK14281 283 RNGDDVIYNLAVSYPDLVLGTKVEVPTL------------------------------------------------DGAV 314 (397)
T ss_pred EecCCEEEEEEecHHHHhcCCeEEeecC------------------------------------------------CccE
Confidence 5689999999999999999999888411 1237
Q ss_pred EEEecCCCCCCcEEEEeeeccc
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
+|.||+|+++|++++|+|+|=.
T Consensus 315 ~v~ip~g~~~G~~~ri~g~G~P 336 (397)
T PRK14281 315 KLTIPAGTQPETMLRIPGKGIG 336 (397)
T ss_pred EEEeCCccCCCcEEEEcCCCCC
Confidence 8999999999999999999964
No 85
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.58 E-value=0.00015 Score=65.18 Aligned_cols=55 Identities=27% Similarity=0.282 Sum_probs=46.8
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+.+.|||.||+.|.++.|..- ...+
T Consensus 261 r~G~DL~~~~~Isl~eAl~G~~~~v~tl------------------------------------------------dG~i 292 (373)
T PRK14301 261 RQGQDLVVTQEISFVQAALGDRIEVPTL------------------------------------------------DDPV 292 (373)
T ss_pred eecCcEEEEEEecHHHHhCCCeEEEecC------------------------------------------------CccE
Confidence 5689999999999999999999888310 1128
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|.||+|+++|++++|+|+|-..
T Consensus 293 ~v~ip~g~~~g~~~ri~g~G~p~ 315 (373)
T PRK14301 293 TLDIPKGTQSGEVFRLRGKGLPY 315 (373)
T ss_pred EEEECCCcCCCcEEEEcCCCCCC
Confidence 99999999999999999999764
No 86
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=97.58 E-value=0.00013 Score=63.99 Aligned_cols=54 Identities=20% Similarity=0.123 Sum_probs=46.0
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+..++.|||.+|+.|+++.|..- ...+
T Consensus 206 r~g~DL~~~~~Isl~~al~G~~~~i~~~------------------------------------------------~g~v 237 (306)
T PRK10266 206 IVGQDLEIVVPLAPWEAALGAKVTVPTL------------------------------------------------KESI 237 (306)
T ss_pred EeCCceEEEEecCHHHHhCCCEEEeeCC------------------------------------------------CccE
Confidence 4588999999999999999999888421 1237
Q ss_pred EEEecCCCCCCcEEEEeeeccc
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
+|+||+|+.+|++++|+|+|-.
T Consensus 238 ~v~ip~g~~~g~~~ri~g~G~p 259 (306)
T PRK10266 238 LLTIPPGSQAGQRLRVKGKGLV 259 (306)
T ss_pred EEEeCCCcCCCCEEEECCCCCC
Confidence 9999999999999999999964
No 87
>PRK14288 chaperone protein DnaJ; Provisional
Probab=97.56 E-value=0.00014 Score=65.41 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=47.4
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+.+.|||.||..|.++.|..- ....+
T Consensus 255 R~G~DL~~~~~Isl~eAllG~~i~v~tL-----------------------------------------------dG~~l 287 (369)
T PRK14288 255 REGCDLFIEAPVFFTTIALGHTIKVPSL-----------------------------------------------KGDEL 287 (369)
T ss_pred EeCCEEEEEEecCHHHHhcCCEEEeecC-----------------------------------------------CCCEE
Confidence 5699999999999999999999888411 12468
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|+||+|+++|++++|+|+|-..
T Consensus 288 ~i~i~~~~~~g~~~~i~g~G~p~ 310 (369)
T PRK14288 288 ELKIPRNARDRQTFAFRNEGVKH 310 (369)
T ss_pred EEEeCCCCCCCcEEEEcCCCCCC
Confidence 99999999999999999999653
No 88
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.54 E-value=0.00015 Score=65.43 Aligned_cols=54 Identities=24% Similarity=0.191 Sum_probs=45.4
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+...+.|||.||+.|.++.|..- ...+
T Consensus 269 R~G~DL~~~~~Isl~eAl~G~~~~i~~l------------------------------------------------dg~~ 300 (380)
T PRK14297 269 RKGFDIYIDKHISFAKAALGTEIKVPTV------------------------------------------------DGEV 300 (380)
T ss_pred EeCCCEEEEEEeCHHHHhCCCcEEEEcC------------------------------------------------CCcE
Confidence 4689999999999999999999888411 1237
Q ss_pred EEEecCCCCCCcEEEEeeeccc
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
+|.||+|+++|++++|+|+|-.
T Consensus 301 ~v~ip~g~~~g~~~ri~g~G~p 322 (380)
T PRK14297 301 KYEVPAGTQPGTVFRLKGKGVP 322 (380)
T ss_pred EEEECCCcCCCCEEEEcCCCcC
Confidence 8999999999999999999964
No 89
>PRK14280 chaperone protein DnaJ; Provisional
Probab=97.53 E-value=0.00018 Score=64.78 Aligned_cols=55 Identities=25% Similarity=0.216 Sum_probs=46.3
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+.+.|||.||+.|.++.|..- ...+
T Consensus 264 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------------------------------------------------dg~i 295 (376)
T PRK14280 264 RDGDDIYCEMPLTFAQAALGDEIEVPTL------------------------------------------------HGKV 295 (376)
T ss_pred EecCCEEEEEecCHHHHhCCCEEEEecC------------------------------------------------CceE
Confidence 5699999999999999999999888410 1237
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|.||+|+++|++++|+|+|-..
T Consensus 296 ~v~ip~g~~~g~~~~i~g~G~p~ 318 (376)
T PRK14280 296 KLKIPAGTQTGTQFRLKGKGVPN 318 (376)
T ss_pred EEEECCCCCCCcEEEEcCCCCCC
Confidence 89999999999999999999653
No 90
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=97.52 E-value=0.00021 Score=63.81 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=46.9
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
++|.|+...+.|||+||+.|.++.|..- ...+
T Consensus 264 r~g~DL~~~~~isl~eAl~G~~~~i~~l------------------------------------------------dG~i 295 (354)
T TIGR02349 264 RDGNDLYIEVPISFTQAILGGEIEVPTL------------------------------------------------DGDV 295 (354)
T ss_pred EecCCEEEEEEeCHHHHhCCCeEEEecC------------------------------------------------CceE
Confidence 5689999999999999999999888410 1258
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|.||+|+++|++++|+|+|...
T Consensus 296 ~v~ip~g~~~g~~~~i~g~G~p~ 318 (354)
T TIGR02349 296 KLKIPAGTQSGTVFRLKGKGVPR 318 (354)
T ss_pred EEEECCcccCCcEEEECCCCcCC
Confidence 99999999999999999999764
No 91
>PRK14287 chaperone protein DnaJ; Provisional
Probab=97.51 E-value=0.00019 Score=64.48 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=46.5
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+...+.|||.||+.|.++.|..- ...+
T Consensus 259 R~G~DL~~~~~Isl~eAl~G~~~~i~~l------------------------------------------------dg~i 290 (371)
T PRK14287 259 RDGDDIYCEMPLTFPQVALGDEIEVPTL------------------------------------------------NGKV 290 (371)
T ss_pred EecCCeEEEEeccHHHHhCCCEEEEEcC------------------------------------------------CCCE
Confidence 5689999999999999999999888410 1237
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|+||+|+++|++++|+|+|-..
T Consensus 291 ~v~ip~g~~~g~~~ri~g~G~p~ 313 (371)
T PRK14287 291 KLKIPAGTQTGTSFRLRGKGVPN 313 (371)
T ss_pred EEEECCCccCCcEEEEcCCCccC
Confidence 89999999999999999999653
No 92
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=6.5e-05 Score=58.21 Aligned_cols=67 Identities=24% Similarity=0.470 Sum_probs=53.2
Q ss_pred hCCCCcceecCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCc-----HHHHHHHHHHHHHHHhhcccccccccc
Q 026559 22 IAGKSYYEVLQVPR--GASDEQIKRAYRKLALKYHPDKNQGN-----EEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 22 ~~~~~~y~iLgv~~--~a~~~eIk~ayr~la~~~hPD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
...++||.++|... ...++.++.-|.-..++.|||+.... ..|.+...+||+||.+|.||-+|+.|=
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34578999997544 55667777789999999999984322 247788999999999999999999995
No 93
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.45 E-value=0.00022 Score=64.16 Aligned_cols=55 Identities=25% Similarity=0.192 Sum_probs=46.3
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+.+.|||.||+.|.++.|..- ...+
T Consensus 262 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------------------------------------------------dG~i 293 (377)
T PRK14298 262 RVGDDIISEIPISFTQAALGADIMVPTL------------------------------------------------YGKV 293 (377)
T ss_pred EEcCcEEEEEEeCHHHHhCCCeEEEecC------------------------------------------------CCCE
Confidence 4699999999999999999999888411 1126
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|+||+|+++|++++|+|+|-..
T Consensus 294 ~v~ip~g~~~g~~lri~g~G~p~ 316 (377)
T PRK14298 294 KMNIPPGTQTHSVFRLKDKGMPR 316 (377)
T ss_pred EEEeCCCcccCCEEEECCCCCCC
Confidence 89999999999999999999653
No 94
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.45 E-value=0.00026 Score=65.02 Aligned_cols=67 Identities=25% Similarity=0.325 Sum_probs=48.8
Q ss_pred HHHHHHHhHhhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcH-------HHHHHHHHHHHHHHhhc
Q 026559 12 LCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE-------EANKRFAEINNAYEVLS 79 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~-------~a~~~f~~i~~Ay~~L~ 79 (237)
.+|..|-.+.|. -.=|+-+.+..-.+.++||++|||..+..||||-+... .+++.|..+++||....
T Consensus 376 ALLSTLh~VLW~-es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 376 ALLSTLHYVLWP-ESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred HHHHHHhHhhcC-ccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 555555555666 34456677888889999999999999999999976542 25666777777776543
No 95
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.40 E-value=0.00033 Score=63.17 Aligned_cols=54 Identities=19% Similarity=0.112 Sum_probs=45.6
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+...+.|||+||+.|.++.|..- ...+
T Consensus 267 r~G~DL~~~~~Isl~eAl~G~~~~i~tl------------------------------------------------dG~i 298 (378)
T PRK14283 267 REGANLYYEKPISFVQAALGDTVDVPTI------------------------------------------------DGPV 298 (378)
T ss_pred EecCCEEEEEecCHHHHhcCCeEEEEcC------------------------------------------------CceE
Confidence 4588999999999999999999888410 1147
Q ss_pred EEEecCCCCCCcEEEEeeeccc
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
+|.||+|+++|++++|+|+|-.
T Consensus 299 ~v~ip~g~~~g~~~ri~g~G~p 320 (378)
T PRK14283 299 ELKIPAGTQSGTTFRLKGHGMP 320 (378)
T ss_pred EEEeCCCCCCCCEEEECCCCCC
Confidence 8999999999999999999864
No 96
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.38 E-value=0.00036 Score=62.72 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=46.7
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+...+.|||.||+.|+++.|..- ...+
T Consensus 259 R~G~DL~~~~~Isl~eAl~G~~~~i~~l------------------------------------------------dG~i 290 (371)
T PRK10767 259 RDGNDLYCEVPISFTTAALGGEIEVPTL------------------------------------------------DGRV 290 (371)
T ss_pred EecCCEEEEEEeCHHHHhCCCeEEEecC------------------------------------------------CCcE
Confidence 4689999999999999999999888310 1158
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|.||+|+++|++++|+|+|-..
T Consensus 291 ~v~ip~g~~~g~~~~i~g~G~p~ 313 (371)
T PRK10767 291 KLKIPEGTQTGKLFRLRGKGVKS 313 (371)
T ss_pred EEEeCCCCCCCCEEEECCCCcCC
Confidence 89999999999999999999754
No 97
>PRK14277 chaperone protein DnaJ; Provisional
Probab=97.38 E-value=0.00031 Score=63.48 Aligned_cols=54 Identities=26% Similarity=0.319 Sum_probs=45.2
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+...+.|||.||+.|.++.|..- ... +
T Consensus 276 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG~-~ 307 (386)
T PRK14277 276 REGYNVYLEMPITFTDAALGGEIEIPTL-----------------------------------------------DGK-V 307 (386)
T ss_pred EecCCEEEEEEcCHHHHhCCCEEEEEcC-----------------------------------------------CCC-E
Confidence 4689999999999999999999888310 012 6
Q ss_pred EEEecCCCCCCcEEEEeeeccc
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
+|.||+|+++|++++|+|+|=.
T Consensus 308 ~v~ip~g~~~g~~~ri~g~G~p 329 (386)
T PRK14277 308 KFTIPEGTQTGTKFRLRGKGIP 329 (386)
T ss_pred EEEECCCCCCCCEEEECCCCCC
Confidence 8999999999999999999954
No 98
>PRK14289 chaperone protein DnaJ; Provisional
Probab=97.35 E-value=0.0004 Score=62.75 Aligned_cols=55 Identities=25% Similarity=0.227 Sum_probs=46.4
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.+.|+.+.+.|||.||+.|.++.|..- ...+
T Consensus 275 r~g~DL~~~~~Isl~eAl~G~~~~i~~l------------------------------------------------dg~i 306 (386)
T PRK14289 275 RDENDLIYNLLLSVPTAALGGAVEVPTI------------------------------------------------DGKA 306 (386)
T ss_pred ccccceeEEeccCHHHHhCCCeEEeecC------------------------------------------------CceE
Confidence 4578999999999999999999888421 1237
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|.||+|+++|++++|+|+|-..
T Consensus 307 ~v~ip~g~~~g~~~ri~g~G~p~ 329 (386)
T PRK14289 307 KVKIEAGTQPGKVLRLRNKGLPS 329 (386)
T ss_pred EEEECCccCCCcEEEECCCCcCC
Confidence 99999999999999999999754
No 99
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.31 E-value=0.00037 Score=62.64 Aligned_cols=52 Identities=13% Similarity=0.301 Sum_probs=44.3
Q ss_pred CCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEE
Q 026559 134 GDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTV 213 (237)
Q Consensus 134 g~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V 213 (237)
|.|+.+++.|||.||..|.++.|..- . .. ++|
T Consensus 273 G~DL~~~~~Isl~eAllG~~~~i~tl----------------------------------------------d-G~-~~v 304 (372)
T PRK14296 273 NNDILMTYNISYLDAILGNEIIIKTL----------------------------------------------D-GD-IKY 304 (372)
T ss_pred CCcEEEEEecCHHHHhCCCEEEeeCC----------------------------------------------C-CC-EEE
Confidence 78999999999999999999888410 0 13 789
Q ss_pred EecCCCCCCcEEEEeeeccc
Q 026559 214 DIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 214 ~Ip~G~~~G~~i~l~g~g~~ 233 (237)
+||+|+++|++++|+|+|=.
T Consensus 305 ~ip~~t~~g~~~ri~GkGmP 324 (372)
T PRK14296 305 KLPKSINSNELIIINNKGLY 324 (372)
T ss_pred EECCccCCCcEEEEcCCCCC
Confidence 99999999999999999953
No 100
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.31 E-value=0.00035 Score=63.69 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=46.4
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+.+.|||.||..|.++.|..- ....+
T Consensus 271 R~G~DL~~~~~Isl~eAllG~~i~I~tL-----------------------------------------------dG~~l 303 (421)
T PTZ00037 271 REGGDLFITKKISLYEALTGFVFYITHL-----------------------------------------------DGRKL 303 (421)
T ss_pred EeCCeEEEEEeCCHHHHhcCCEEEeeCC-----------------------------------------------CCCeE
Confidence 5699999999999999999999888310 12458
Q ss_pred EEEecCC--CCCCcEEEEeeeccc
Q 026559 212 TVDIEKG--MQDGQVSFIKFKCDW 233 (237)
Q Consensus 212 ~V~Ip~G--~~~G~~i~l~g~g~~ 233 (237)
+|+||+| +++|++++|+|+|=.
T Consensus 304 ~I~ip~g~vt~pg~~~~I~geGmP 327 (421)
T PTZ00037 304 LVNTPPGEVVKPGDIKVINNEGMP 327 (421)
T ss_pred EEEeCCCcccCCCcEEEeCCCCcc
Confidence 8999999 999999999999943
No 101
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00044 Score=61.52 Aligned_cols=55 Identities=27% Similarity=0.369 Sum_probs=46.1
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+...+.|+|.+|..|.++.|.. +. .. +
T Consensus 261 R~g~dL~~~~~Is~~~AalG~~i~vpt----------------------------------------------l~-g~-~ 292 (371)
T COG0484 261 RDGDDLYCEVPISFTEAALGGEIEVPT----------------------------------------------LD-GR-V 292 (371)
T ss_pred ECCCceEeccccCHHHHhcCCEEEEEe----------------------------------------------cC-CC-E
Confidence 458899999999999999998888841 11 12 8
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|+||+|++.|++++|+|+|=..
T Consensus 293 ~l~ip~Gtq~G~~~rl~gkG~p~ 315 (371)
T COG0484 293 KLKIPAGTQTGEVFRLRGKGMPK 315 (371)
T ss_pred EEecCCCCccCcEEEEcCCCccc
Confidence 99999999999999999999654
No 102
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.24 E-value=0.00049 Score=61.89 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=46.1
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+...+.|||.||+.|+++.|..- .| . .
T Consensus 259 r~g~dL~~~~~isl~eAl~G~~~~i~tl----------------------------------------dG-------~-~ 290 (371)
T PRK14292 259 REQEHLIYEARIGFAKAALGGQITVPTL----------------------------------------DG-------P-Q 290 (371)
T ss_pred cchhceeEEeccCHHHHhCCCeEEEECC----------------------------------------CC-------C-E
Confidence 5688999999999999999999888410 01 1 3
Q ss_pred EEEecCCCCCCcEEEEeeecccCC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
+|.||+|+++|++++|+|+|....
T Consensus 291 ~v~ip~g~~~g~~~~i~g~G~p~~ 314 (371)
T PRK14292 291 VIEVKPGTQHGDLHRLRGQGMPRL 314 (371)
T ss_pred EEecCCCcCCCcEEEECCCCCCCC
Confidence 699999999999999999998654
No 103
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.13 E-value=0.00058 Score=61.45 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=44.8
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
++|.|+...+.|||.||+.|.++.|..- ...+
T Consensus 264 r~g~DL~~~~~Isl~eAl~G~~~~i~~l------------------------------------------------dG~~ 295 (374)
T PRK14293 264 RDGINILSEIKISYLQAILGDTLEVDTV------------------------------------------------DGPV 295 (374)
T ss_pred hhhhceEEEeccCHHHHhCCCEEEecCC------------------------------------------------CCCE
Confidence 4688999999999999999999888421 0126
Q ss_pred EEEecCCCCCCcEEEEeeeccc
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
+|+||+|+++|++++|+|+|=.
T Consensus 296 ~i~ip~~~~~g~~~ri~g~G~p 317 (374)
T PRK14293 296 ELTIPAGTQPNTVLTLENKGVP 317 (374)
T ss_pred EEEeCCCCCCCCEEEECCCCCC
Confidence 8899999999999999999854
No 104
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=96.96 E-value=0.0012 Score=44.38 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=23.0
Q ss_pred ccccccceEEEEEecCceeEEeeeccCCCCCCceEEE
Q 026559 170 RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYER 206 (237)
Q Consensus 170 ~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~ 206 (237)
+.|+|+|.+...+..+++++ .....|+.|+|.|.+.
T Consensus 19 ~~C~G~G~~~~~~~~~~~~~-~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 19 PQCNGSGQVTRRQQTPGGVF-QMQQTCPKCGGTGKII 54 (66)
T ss_dssp TTSSSSSEEEEEEESSSTTE-EEEEE-TTTSSSSEE-
T ss_pred cCCCCeeEEEEEEeCCCeEE-EEEEECCCCcceeeEE
Confidence 46899999876644544433 3344799999988764
No 105
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00062 Score=54.74 Aligned_cols=54 Identities=39% Similarity=0.595 Sum_probs=46.5
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------HHHHHHHHHHHHHHHhh
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-------EEANKRFAEINNAYEVL 78 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~-------~~a~~~f~~i~~Ay~~L 78 (237)
.+.|.+|++...++..+|+++||++..++|||+-... ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999999974321 24788999999999854
No 106
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0022 Score=51.49 Aligned_cols=64 Identities=33% Similarity=0.481 Sum_probs=49.1
Q ss_pred CcceecCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcHH-----HHHHHHHHHHHHHhhccccccccccc
Q 026559 26 SYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEE-----ANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 26 ~~y~iLgv~~~a--~~~eIk~ayr~la~~~hPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
+++..+|..+.+ ..+.++..|+.+.+.+|||+...... +.+.+..++.||.+|.+|-+|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344555555544 34558899999999999999865532 44678899999999999999999853
No 107
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=95.74 E-value=0.029 Score=41.57 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=22.4
Q ss_pred eecCCCCC-----ccccccceEEEEEecCceeEEeeeccCCCCCCce
Q 026559 162 VIKPAPGK-----RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVK 203 (237)
Q Consensus 162 v~~~c~G~-----~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g 203 (237)
.|..|.|+ +.|+|+|.+..++ ++ ++ .....|+.|.|.|
T Consensus 43 ~C~~C~GsG~~~C~~C~G~G~v~~~~-~g-~~--q~~~~C~~C~G~G 85 (111)
T PLN03165 43 PCFPCSGTGAQVCRFCVGSGNVTVEL-GG-GE--KEVSKCINCDGAG 85 (111)
T ss_pred CCCCCCCCCCcCCCCCcCcCeEEEEe-CC-cE--EEEEECCCCCCcc
Confidence 57788776 5678899876544 33 22 2233555555554
No 108
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.53 E-value=0.027 Score=42.76 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=36.8
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccc
Q 026559 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDS 81 (237)
Q Consensus 27 ~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 81 (237)
-..||+|++..+.++|.+.|.+|-..++|++.++. -.-..|..|.|.|...
T Consensus 60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf----YLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGGSF----YLQSKVFRAKERLEQE 110 (127)
T ss_dssp HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-H----HHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCH----HHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999988643 3445677888877644
No 109
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=90.94 E-value=0.14 Score=34.19 Aligned_cols=21 Identities=14% Similarity=0.654 Sum_probs=13.7
Q ss_pred cccccceEEEEEecCceeEEeeeccCCCCCCce
Q 026559 171 RCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVK 203 (237)
Q Consensus 171 ~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g 203 (237)
.|+|+|.++ . +++|+.|+|.|
T Consensus 46 ~C~G~G~~i-~-----------~~~C~~C~G~g 66 (66)
T PF00684_consen 46 KCGGTGKII-E-----------KDPCKTCKGSG 66 (66)
T ss_dssp TTSSSSEE--T-----------SSB-SSSTTSS
T ss_pred CCcceeeEE-C-----------CCCCCCCCCcC
Confidence 467777754 1 46899999975
No 110
>PF13446 RPT: A repeated domain in UCH-protein
Probab=86.96 E-value=1.3 Score=28.88 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.2
Q ss_pred CcceecCCCCCCCHHHHHHHHHHHHH
Q 026559 26 SYYEVLQVPRGASDEQIKRAYRKLAL 51 (237)
Q Consensus 26 ~~y~iLgv~~~a~~~eIk~ayr~la~ 51 (237)
+-|++|||+++.+++.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998766
No 111
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=86.38 E-value=1.8 Score=35.44 Aligned_cols=38 Identities=32% Similarity=0.415 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhc
Q 026559 34 PRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLS 79 (237)
Q Consensus 34 ~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~ 79 (237)
+++||.+||.+|+.++..+|-- ++ +.-.+|-.||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~g-----d~---~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAG-----DE---KSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC-----CH---HHHHHHHHHHHHHH
Confidence 5799999999999999998832 22 34456889998644
No 112
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=84.90 E-value=0.99 Score=39.88 Aligned_cols=54 Identities=35% Similarity=0.552 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----cHHHHHHHHHHHHHHHhhccccccccccc
Q 026559 36 GASDEQIKRAYRKLALKYHPDKNQG----NEEANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 36 ~a~~~eIk~ayr~la~~~hPD~~~~----~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
.++..+|..+|+..++..||++... ....++.|+.|..||++|++..+|..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 3577889999999999999998742 11245779999999999998666555554
No 113
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=82.01 E-value=2 Score=40.59 Aligned_cols=7 Identities=29% Similarity=1.312 Sum_probs=3.5
Q ss_pred cCCCCCC
Q 026559 195 VCDQCQN 201 (237)
Q Consensus 195 ~C~~C~G 201 (237)
.|+.|.-
T Consensus 97 lc~~c~~ 103 (715)
T COG1107 97 LCPECRR 103 (715)
T ss_pred cChhHhh
Confidence 4555543
No 114
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=81.72 E-value=4.1 Score=30.21 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcHH----HHHHHHHHHHHHHhhcccc
Q 026559 35 RGASDEQIKRAYRKLALKYHPDKNQGNEE----ANKRFAEINNAYEVLSDSE 82 (237)
Q Consensus 35 ~~a~~~eIk~ayr~la~~~hPD~~~~~~~----a~~~f~~i~~Ay~~L~d~~ 82 (237)
+..+..+++.|.|..-++.|||.-...++ -++-++.++.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 34567889999999999999997554432 3455777777777776543
No 115
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=78.00 E-value=1.5 Score=41.43 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=6.1
Q ss_pred cCCCCCCceEEE
Q 026559 195 VCDQCQNVKYER 206 (237)
Q Consensus 195 ~C~~C~G~g~~~ 206 (237)
+|+.|+|.|.++
T Consensus 55 pc~~c~gkG~V~ 66 (715)
T COG1107 55 PCPKCRGKGTVT 66 (715)
T ss_pred CCCeeccceeEE
Confidence 555555554443
No 116
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=68.30 E-value=19 Score=24.55 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=27.1
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKN 58 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~ 58 (237)
.++.-+++++.|-|++.||+.|-++..+|..--..
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~ 36 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTH 36 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 35556788999999999999998888777643333
No 117
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=64.71 E-value=4.2 Score=18.42 Aligned_cols=13 Identities=54% Similarity=0.951 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhc
Q 026559 67 RFAEINNAYEVLS 79 (237)
Q Consensus 67 ~f~~i~~Ay~~L~ 79 (237)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5778888888774
No 118
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=61.90 E-value=35 Score=30.05 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=40.8
Q ss_pred CCCcceecCCCC-CCCHHHHHHHHHHHHHHh-------CCCCCCC---cHHHHHHHHHHHHHHHhhccc
Q 026559 24 GKSYYEVLQVPR-GASDEQIKRAYRKLALKY-------HPDKNQG---NEEANKRFAEINNAYEVLSDS 81 (237)
Q Consensus 24 ~~~~y~iLgv~~-~a~~~eIk~ayr~la~~~-------hPD~~~~---~~~a~~~f~~i~~Ay~~L~d~ 81 (237)
..++++-||++. ..+.+|+.+-.++++.+. ++|.+.. +..-++.++++.+||+.|++.
T Consensus 81 R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 81 RPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred CcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 577899999998 789999888776665443 3333211 111367899999999998864
No 119
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=61.16 E-value=8.7 Score=33.75 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=14.8
Q ss_pred eccCCCCCCceEEEeeEEEEEE
Q 026559 193 EQVCDQCQNVKYEREGYFVTVD 214 (237)
Q Consensus 193 ~~~C~~C~G~g~~~~~~~~~V~ 214 (237)
+.+|..|.|.|-+.....+.|.
T Consensus 256 ~k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 256 KKPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred CcccccccCccceeeeEEEEEE
Confidence 4588888888766655555444
No 120
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=60.16 E-value=14 Score=20.07 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhCC
Q 026559 39 DEQIKRAYRKLALKYHP 55 (237)
Q Consensus 39 ~~eIk~ayr~la~~~hP 55 (237)
.++.+.+.|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 46788899999999993
No 121
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=55.94 E-value=62 Score=22.21 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=26.9
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQ 59 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~ 59 (237)
++--.+-|+.|-|+++||..|=.+.++|..=-..+
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~P 37 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKP 37 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCc
Confidence 44455668899999999999998888887544444
No 122
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=54.81 E-value=16 Score=32.50 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=18.4
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVW 157 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~ 157 (237)
+++.|+...+.++|.|+..|..+.+.
T Consensus 249 Rrg~dL~~~~~i~l~eal~G~~~~~~ 274 (337)
T KOG0712|consen 249 RRGSDLYRKLTISLVEALCGFQRVWE 274 (337)
T ss_pred ecccccceeeecchhhccccceEEEE
Confidence 45777777778888887777665553
No 123
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.51 E-value=15 Score=31.51 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=20.9
Q ss_pred eecCCCCC-----ccccccceEEEEEecCceeEEeeeccCCCCCCceEEE
Q 026559 162 VIKPAPGK-----RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYER 206 (237)
Q Consensus 162 v~~~c~G~-----~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~ 206 (237)
+|..|.|- ..|+|+-+++...-.-+. ...|..|+-+|.++
T Consensus 231 ~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~-----~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 231 VCESCGGARFLPCSNCHGSCKVHEEEEDDGG-----VLRCLECNENGLVR 275 (281)
T ss_pred cCCCcCCcceEecCCCCCceeeeeeccCCCc-----EEECcccCCCCcee
Confidence 56666654 346665555542111111 23678887766654
No 124
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=53.17 E-value=15 Score=28.62 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=22.5
Q ss_pred eeecCCCCC-----ccccccceEEEEEecCceeEEeeeccCCCCCCceEE
Q 026559 161 NVIKPAPGK-----RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYE 205 (237)
Q Consensus 161 ~v~~~c~G~-----~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~ 205 (237)
..|..|.|. ..|+|+-+++..... ......+|+.|+-.|.+
T Consensus 100 ~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~----~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARFVPCSECNGSCKVFAENAT----AAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCeEECCCCCCcceEEeccCc----ccccEEECCCCCccccc
Confidence 467777775 456666665543210 00112478888766654
No 125
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=51.70 E-value=24 Score=31.21 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=38.6
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcHHHHHHHHHHHHHHHhhc
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQ-GNEEANKRFAEINNAYEVLS 79 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~-~~~~a~~~f~~i~~Ay~~L~ 79 (237)
--...++|+.|||++..-+.++-+.-...+.+.-|-.-. +++.-......+..++..|.
T Consensus 246 d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 305 (351)
T CHL00185 246 DLQRSDFYAAIGLDARQFDMHVIRKTNESAARLFPVVLDVDNPKFFKYLDQCACANLKLI 305 (351)
T ss_pred hcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 345679999999999887777666667777777776532 33433344445555555554
No 126
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=49.56 E-value=19 Score=35.84 Aligned_cols=37 Identities=19% Similarity=0.519 Sum_probs=23.0
Q ss_pred ccccceEEEE-EecCceeEEeeeccCCCCCCceEEEeeEEEEEEe
Q 026559 172 CNCRNEVYHK-QIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDI 215 (237)
Q Consensus 172 C~g~G~v~~~-~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~I 215 (237)
|.|.|.+.+. ..-|..+ -+|+.|+|..+-. ++++|+.
T Consensus 736 C~GdG~ikIeM~FLpdVy-----v~CevC~GkRYn~--EtLev~y 773 (935)
T COG0178 736 CQGDGVIKIEMHFLPDVY-----VPCEVCHGKRYNR--ETLEVKY 773 (935)
T ss_pred ccCCceEEEEeccCCCce-----eeCCCcCCccccc--ceEEEEE
Confidence 6667876554 3333332 3899999988765 4455543
No 127
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=48.15 E-value=38 Score=29.77 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=39.6
Q ss_pred HHHHHHhHhhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcHHHHHHHHHHHHHHHhhc
Q 026559 13 CALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQ-GNEEANKRFAEINNAYEVLS 79 (237)
Q Consensus 13 ~~~~~~~~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~-~~~~a~~~f~~i~~Ay~~L~ 79 (237)
.+..+.+.--...++|+.|||++..-+.++-+.-...+.+.-|-.-. +++.=......+..+...|.
T Consensus 232 VfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 299 (337)
T TIGR02029 232 VYSTMYLRDHQRPGFYEALGLDATDFDLQVFRNTNETSGRIFPMTLNTEHPRFRRLLDRMAGYSEKIS 299 (337)
T ss_pred HHHHHhhhhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 33333334455679999999999877777666666777777776532 23322233334444444443
No 128
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=47.25 E-value=17 Score=37.03 Aligned_cols=39 Identities=23% Similarity=0.452 Sum_probs=24.6
Q ss_pred ccccccceEEEE-EecCceeEEeeeccCCCCCCceEEEeeEEEEE
Q 026559 170 RRCNCRNEVYHK-QIGPGMFQQMTEQVCDQCQNVKYEREGYFVTV 213 (237)
Q Consensus 170 ~~C~g~G~v~~~-~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V 213 (237)
+.|.|.|.+... +..+.. ..+|+.|+|.++..+.-.+++
T Consensus 742 ~~C~G~G~~~~~~~f~~~~-----~~~C~~C~G~R~~~e~l~v~~ 781 (943)
T PRK00349 742 EACQGDGVIKIEMHFLPDV-----YVPCDVCKGKRYNRETLEVKY 781 (943)
T ss_pred CcccccceEEEEeccCCCc-----cccCccccCccccccceEEEE
Confidence 347778877654 322221 359999999988776544433
No 129
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=45.72 E-value=34 Score=25.87 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=19.2
Q ss_pred eeEEEEEEecCCCCCCcEEEEeee
Q 026559 207 EGYFVTVDIEKGMQDGQVSFIKFK 230 (237)
Q Consensus 207 ~~~~~~V~Ip~G~~~G~~i~l~g~ 230 (237)
+...+++.-+.+++.||.+.+.-.
T Consensus 40 ~~~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 40 KPITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred CcEEEEecCCCCCCCCCEEEEEec
Confidence 457788888999999999988643
No 130
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=44.28 E-value=37 Score=29.70 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=28.8
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKN 58 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~ 58 (237)
--...++|+.|||++..-+.++-+.-...+.+.-|-.-
T Consensus 230 d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~~L 267 (323)
T cd01047 230 DHQRPDFYEALGLDTTEFDMHVIRETNETAARVFPAVL 267 (323)
T ss_pred ccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeee
Confidence 34467899999999988777766666777777777653
No 131
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=43.63 E-value=25 Score=25.24 Aligned_cols=11 Identities=45% Similarity=0.331 Sum_probs=5.3
Q ss_pred CcchhhHHHHH
Q 026559 1 MAHRRARLLFL 11 (237)
Q Consensus 1 ~~~~~~~~~~~ 11 (237)
|+|..+.+|.|
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 67554333333
No 132
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.98 E-value=41 Score=25.39 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=28.8
Q ss_pred ceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 026559 28 YEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG 60 (237)
Q Consensus 28 y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~ 60 (237)
-.||+|++..+.+||.+.|-.|-.-..+.+.++
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 679999999999999999999988877776653
No 133
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.76 E-value=16 Score=36.97 Aligned_cols=40 Identities=18% Similarity=0.434 Sum_probs=24.5
Q ss_pred ccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEEEe
Q 026559 170 RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDI 215 (237)
Q Consensus 170 ~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~I 215 (237)
+.|.|.|.+...- +++.. ...+|+.|+|.++..+. ++|++
T Consensus 740 ~~C~G~G~~~~~~---~f~~~-~~~~C~~C~G~R~~~e~--l~v~~ 779 (924)
T TIGR00630 740 EACQGDGVIKIEM---HFLPD-VYVPCEVCKGKRYNRET--LEVKY 779 (924)
T ss_pred CCCccceEEEEEc---cCCCC-cccCCCCcCCceeChHH--Hhcee
Confidence 3477888766431 12111 14599999999887764 44444
No 134
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=39.59 E-value=39 Score=29.97 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=36.9
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcHHHHHHHHHHHHHHHhhc
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQ-GNEEANKRFAEINNAYEVLS 79 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~-~~~~a~~~f~~i~~Ay~~L~ 79 (237)
--...++|+.|||++..-+.++-+.-...+.+.-|-.-. +++.=......+..+...|.
T Consensus 250 d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 309 (355)
T PRK13654 250 DHERPDFYEALGLDAREYDQEVIRKTNETSARVFPVVLDVDDPRFYARLERCVENNEKLR 309 (355)
T ss_pred cccchHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHHH
Confidence 344678999999999887777666677777777786532 23322233334444444443
No 135
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=34.75 E-value=59 Score=28.81 Aligned_cols=37 Identities=8% Similarity=0.121 Sum_probs=27.9
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDK 57 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~ 57 (237)
--...++|+.|||++..-+.++-+.-.+.+.+.-|-.
T Consensus 246 d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~ 282 (357)
T PLN02508 246 DHQRTAFYEGIGLNTKQFNMHVIIETNRTTARIFPAV 282 (357)
T ss_pred ccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCee
Confidence 3446789999999998777776666667777777765
No 136
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=34.39 E-value=93 Score=24.30 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=16.9
Q ss_pred eEEEEEEecCCCCCCcEEEEe
Q 026559 208 GYFVTVDIEKGMQDGQVSFIK 228 (237)
Q Consensus 208 ~~~~~V~Ip~G~~~G~~i~l~ 228 (237)
...++|.-+.+.+.||.+.+.
T Consensus 48 ~~~~~v~~~~~~~vGD~V~v~ 68 (154)
T PRK10862 48 THQLVVPSSQPLVPGQKVELG 68 (154)
T ss_pred ceEEEecCCCCCCCCCEEEEe
Confidence 456788888889999998874
No 137
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=34.26 E-value=40 Score=21.94 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.6
Q ss_pred EEcccHHHHhcCceeEE
Q 026559 140 ELDATLEDLYMGGSLKV 156 (237)
Q Consensus 140 ~l~vtLee~~~G~~~~i 156 (237)
.+.|+|+|+.+|-.+..
T Consensus 30 RFeIsLeDl~~GE~VAr 46 (67)
T COG5216 30 RFEISLEDLRNGEVVAR 46 (67)
T ss_pred EeEEEHHHhhCCceEEE
Confidence 57899999999976544
No 138
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=33.87 E-value=51 Score=23.77 Aligned_cols=52 Identities=13% Similarity=0.358 Sum_probs=29.0
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc-cccc
Q 026559 32 QVPRGAS-DEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD-TYGE 92 (237)
Q Consensus 32 gv~~~a~-~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD-~~G~ 92 (237)
|++|++. -.+|-+.++.+...+++. + .+.+..|.+.| +.||.-+..|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~----~---~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG----D---PELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS----------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC----C---HHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 4555543 233556666666666651 1 24677777777 67777777777 5543
No 139
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=33.48 E-value=49 Score=21.89 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 45 AYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 45 ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
..|...++-||+.. ..+..+.|.+.|..|++.++...+|
T Consensus 15 ~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~ 53 (72)
T cd01388 15 RHRRKVLQEYPLKE-----NRAISKILGDRWKALSNEEKQPYYE 53 (72)
T ss_pred HHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555566789853 3367788999999999888766554
No 140
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=33.26 E-value=16 Score=30.84 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=11.2
Q ss_pred cCCCCCCceEEEee
Q 026559 195 VCDQCQNVKYEREG 208 (237)
Q Consensus 195 ~C~~C~G~g~~~~~ 208 (237)
.||.|.|.|++..+
T Consensus 40 tCPTCqGtGrIP~e 53 (238)
T PF07092_consen 40 TCPTCQGTGRIPRE 53 (238)
T ss_pred cCCCCcCCccCCcc
Confidence 79999999977643
No 141
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=32.76 E-value=42 Score=26.10 Aligned_cols=14 Identities=21% Similarity=0.824 Sum_probs=11.4
Q ss_pred ccCCCCCCceEEEe
Q 026559 194 QVCDQCQNVKYERE 207 (237)
Q Consensus 194 ~~C~~C~G~g~~~~ 207 (237)
.+|++|.+..+.+.
T Consensus 131 ~~Cp~C~~~~F~R~ 144 (146)
T PF07295_consen 131 PPCPKCGHTEFTRQ 144 (146)
T ss_pred CCCCCCCCCeeeeC
Confidence 48999999887764
No 142
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=32.33 E-value=48 Score=20.88 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+++..+.-||+.+ ..+..+.+.+.|..|++.++....|
T Consensus 13 ~~~~~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~~k~~y~~ 52 (66)
T cd00084 13 QEHRAEVKAENPGLS-----VGEISKILGEMWKSLSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 445666677788843 3467788999999999876655444
No 143
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=31.70 E-value=35 Score=31.33 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=13.7
Q ss_pred eccCCCCCCceEEEee
Q 026559 193 EQVCDQCQNVKYEREG 208 (237)
Q Consensus 193 ~~~C~~C~G~g~~~~~ 208 (237)
..+|+.|+|.|.+...
T Consensus 390 ~~~Cp~C~G~G~v~s~ 405 (414)
T TIGR00757 390 GTVCPHCSGTGIVKTS 405 (414)
T ss_pred cCCCCCCcCeeEEccH
Confidence 6899999999988754
No 144
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=31.57 E-value=51 Score=20.95 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccc
Q 026559 46 YRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 46 yr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
.|...+.-||+.. ..+..+.+.+.|..|++.++....+.
T Consensus 15 ~r~~~~~~~p~~~-----~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 15 QRPKLKKENPDAS-----VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445556688743 34678889999999998776655443
No 145
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=29.56 E-value=2.1e+02 Score=22.45 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHH-----------HHHhCCCCCC
Q 026559 34 PRGASDEQIKRAYRKL-----------ALKYHPDKNQ 59 (237)
Q Consensus 34 ~~~a~~~eIk~ayr~l-----------a~~~hPD~~~ 59 (237)
.|-+|.+++..+.... ++..|||-..
T Consensus 30 RPf~s~~~L~~a~~~~~~~~~~~~~~~~l~~HP~lg~ 66 (158)
T TIGR03180 30 RPFASAEALLAAADQAWQNLSEQDLFEALAGHPRIGE 66 (158)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccC
Confidence 4455666666655433 5667999764
No 146
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=29.53 E-value=72 Score=22.66 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=22.1
Q ss_pred cCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEe
Q 026559 195 VCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIK 228 (237)
Q Consensus 195 ~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~ 228 (237)
.|.-|++........++.+..|.|. ..|+|+
T Consensus 1 ~C~~C~~~~~~~~~tTv~~el~~G~---~~IvIk 31 (89)
T TIGR03829 1 KCRWCEEEKAIARTTTVYWELPDGT---KAIEIK 31 (89)
T ss_pred CCcccCCCceecceEEEEEEecCCc---eEEEEe
Confidence 4888988777777788888888763 344444
No 147
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=29.15 E-value=2.5e+02 Score=22.87 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=15.0
Q ss_pred EEEEEecCC-CCCCcEEEEee
Q 026559 210 FVTVDIEKG-MQDGQVSFIKF 229 (237)
Q Consensus 210 ~~~V~Ip~G-~~~G~~i~l~g 229 (237)
.+.+.|||| +..|..-.++|
T Consensus 80 El~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 80 ELGLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred ceEEEECCCccCCceEEeeHh
Confidence 457788888 68888777765
No 148
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=28.23 E-value=59 Score=28.88 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 46 YRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 46 yr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
.||...+-.||.++ .|+-|.|-.-|..|++.+||-.+|
T Consensus 77 ~RRkma~qnP~mHN-----SEISK~LG~~WK~Lse~EKrPFi~ 114 (331)
T KOG0527|consen 77 QRRKLAKQNPKMHN-----SEISKRLGAEWKLLSEEEKRPFVD 114 (331)
T ss_pred HHHHHHHhCcchhh-----HHHHHHHHHHHhhcCHhhhccHHH
Confidence 34444445688763 378999999999999999999998
No 149
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=28.19 E-value=2.2e+02 Score=22.50 Aligned_cols=43 Identities=28% Similarity=0.262 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHH-----------HHHhCCCCCCC----------------cHHHHHHHHHHHHHHH
Q 026559 34 PRGASDEQIKRAYRKL-----------ALKYHPDKNQG----------------NEEANKRFAEINNAYE 76 (237)
Q Consensus 34 ~~~a~~~eIk~ayr~l-----------a~~~hPD~~~~----------------~~~a~~~f~~i~~Ay~ 76 (237)
.|-+|.+++..+.... ++..|||.... +.+..+.|.++|.+|+
T Consensus 40 RPf~s~~~L~~a~~~~~~~~~~~~~~~~l~~HP~lg~~~~~~~S~~EQ~gl~~l~~~~~~~l~~lN~~Y~ 109 (166)
T PRK13798 40 RPFADHDALLAAADEALAGLSEADIDEALAGHPRIGERPASKASAREQAGVADADEAVMAALAAGNRAYE 109 (166)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccCccccccCHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 3455666666655433 56679997642 1234567788888887
No 150
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=28.11 E-value=52 Score=23.59 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=17.3
Q ss_pred ecCCCCCCCHHHHHHHHHHH
Q 026559 30 VLQVPRGASDEQIKRAYRKL 49 (237)
Q Consensus 30 iLgv~~~a~~~eIk~ayr~l 49 (237)
++-|+++|+..+||+|..++
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 67789999999999998876
No 151
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=27.88 E-value=54 Score=18.59 Aligned_cols=10 Identities=20% Similarity=0.617 Sum_probs=4.2
Q ss_pred CCCCCCceEE
Q 026559 196 CDQCQNVKYE 205 (237)
Q Consensus 196 C~~C~G~g~~ 205 (237)
|+.|++.+++
T Consensus 6 C~~C~~~~i~ 15 (33)
T PF08792_consen 6 CSKCGGNGIV 15 (33)
T ss_pred cCCCCCCeEE
Confidence 4444444433
No 152
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=27.29 E-value=72 Score=33.42 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=20.2
Q ss_pred cccHHHHh--------cCceeEEEeeeeeecCCCC
Q 026559 142 DATLEDLY--------MGGSLKVWREKNVIKPAPG 168 (237)
Q Consensus 142 ~vtLee~~--------~G~~~~i~~~~~v~~~c~G 168 (237)
.-++.+|+ .+....+.+.+..|+.|..
T Consensus 641 qR~I~kAa~~a~~~~d~~G~ieVEV~~rkCPkCG~ 675 (1337)
T PRK14714 641 QRDVAKAAKHAPDMSDEGGVIEVEVGRRRCPSCGT 675 (1337)
T ss_pred cccHHHHHHhhhhccccCCeEEEEEEEEECCCCCC
Confidence 34688888 6677777777778988864
No 153
>COG1470 Predicted membrane protein [Function unknown]
Probab=27.10 E-value=84 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=22.8
Q ss_pred eeEEEEEEecCCCCCCc-EEEEeeeccc
Q 026559 207 EGYFVTVDIEKGMQDGQ-VSFIKFKCDW 233 (237)
Q Consensus 207 ~~~~~~V~Ip~G~~~G~-~i~l~g~g~~ 233 (237)
++..++|++|+++.+|+ +|.|+++-|+
T Consensus 444 ~tV~ltI~vP~~a~aGdY~i~i~~ksDq 471 (513)
T COG1470 444 KTVSLTITVPEDAGAGDYRITITAKSDQ 471 (513)
T ss_pred ceEEEEEEcCCCCCCCcEEEEEEEeecc
Confidence 46789999999999998 7788888773
No 154
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=26.03 E-value=22 Score=35.34 Aligned_cols=61 Identities=15% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHhcCc--eeEEEeeeeeecCCCCC---ccc-cccceEEEEEecCceeEEeeeccCCCCCCceEE
Q 026559 145 LEDLYMGG--SLKVWREKNVIKPAPGK---RRC-NCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYE 205 (237)
Q Consensus 145 Lee~~~G~--~~~i~~~~~v~~~c~G~---~~C-~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~ 205 (237)
+.+|+.-. +..+.+-+..|+.|.-. ..| .|..........|..-.....+.|++|......
T Consensus 638 i~~A~~~~~g~i~vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~~~~C~~C~~~~~~ 704 (900)
T PF03833_consen 638 IQKAAKKGKGTIEVEIGRRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVEEDECPKCGRETTS 704 (900)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHhcCCCeeEEeeecccCcccCCcchhhcCcccCCccccceeccccccccCccccccccccCcc
Confidence 44555433 35555555678777432 345 344332222222322233336689999765433
No 155
>COG2879 Uncharacterized small protein [Function unknown]
Probab=25.67 E-value=1.4e+02 Score=19.79 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 026559 46 YRKLALKYHPDKNQGNEEANKRFAEIN 72 (237)
Q Consensus 46 yr~la~~~hPD~~~~~~~a~~~f~~i~ 72 (237)
|-.-.++.|||+.+-.. +|-|++-.
T Consensus 28 YVehmr~~hPd~p~mT~--~EFfrec~ 52 (65)
T COG2879 28 YVEHMRKKHPDKPPMTY--EEFFRECQ 52 (65)
T ss_pred HHHHHHHhCcCCCcccH--HHHHHHHH
Confidence 66667889999987553 34455443
No 156
>PRK04023 DNA polymerase II large subunit; Validated
Probab=25.40 E-value=56 Score=33.37 Aligned_cols=24 Identities=8% Similarity=0.075 Sum_probs=19.5
Q ss_pred cHHHHhc-CceeEEEeeeeeecCCC
Q 026559 144 TLEDLYM-GGSLKVWREKNVIKPAP 167 (237)
Q Consensus 144 tLee~~~-G~~~~i~~~~~v~~~c~ 167 (237)
++.+|+. +.+..+.+....|..|.
T Consensus 609 ~i~~A~~~~g~~eVEVg~RfCpsCG 633 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIGRRKCPSCG 633 (1121)
T ss_pred cHHHHHhcCCceeecccCccCCCCC
Confidence 5888888 78888888877888885
No 157
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=25.34 E-value=43 Score=22.42 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=12.2
Q ss_pred ecCCCCCCcEEEE
Q 026559 215 IEKGMQDGQVSFI 227 (237)
Q Consensus 215 Ip~G~~~G~~i~l 227 (237)
+|+|++.|+.|.+
T Consensus 30 LP~~~keGDvl~i 42 (71)
T PF11213_consen 30 LPEGAKEGDVLEI 42 (71)
T ss_pred CCCCCCcccEEEE
Confidence 6999999999988
No 158
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=24.76 E-value=91 Score=20.84 Aligned_cols=40 Identities=10% Similarity=-0.016 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+|+..+.-||+.. ..+..+.|.+.|..|++.++...++
T Consensus 14 ~~~r~~~~~~~p~~~-----~~eisk~~g~~Wk~ls~eeK~~y~~ 53 (77)
T cd01389 14 QDKHAQLKTENPGLT-----NNEISRIIGRMWRSESPEVKAYYKE 53 (77)
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 456667777789864 3367788999999999777655444
No 159
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=24.76 E-value=75 Score=20.46 Aligned_cols=19 Identities=5% Similarity=0.095 Sum_probs=13.1
Q ss_pred EEEEEecCCCCCCcEEEEe
Q 026559 210 FVTVDIEKGMQDGQVSFIK 228 (237)
Q Consensus 210 ~~~V~Ip~G~~~G~~i~l~ 228 (237)
=+.|.||.=++.|++|++.
T Consensus 29 G~~i~VP~FI~~Gd~I~Vd 47 (56)
T PF09285_consen 29 GAEIQVPLFIEEGDKIKVD 47 (56)
T ss_dssp S-EEEEETT--TT-EEEEE
T ss_pred CCEEEccceecCCCEEEEE
Confidence 3679999999999999985
No 160
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=24.51 E-value=1.5e+02 Score=26.03 Aligned_cols=54 Identities=24% Similarity=0.403 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------------------------HHHHHHHHHHHHHHHhhcccccccc
Q 026559 33 VPRGASDEQIKRAYRKLALKYHPDKNQGN--------------------------EEANKRFAEINNAYEVLSDSETRNI 86 (237)
Q Consensus 33 v~~~a~~~eIk~ayr~la~~~hPD~~~~~--------------------------~~a~~~f~~i~~Ay~~L~d~~~r~~ 86 (237)
++++.+.+|+-+|.+..--.+|||.+..- ..+.--+|.+|+.|.++=+-.+|..
T Consensus 44 ~~~~~~~~~lw~Ak~l~~Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~~~ifwQw~NQS~Na~vNy~Nrna 123 (308)
T PF03820_consen 44 VPPGLTDDELWKAKKLYDSAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTPAVIFWQWVNQSYNAAVNYTNRNA 123 (308)
T ss_pred CCCCCCHHHHHHHHHHhhcccCCCCCCccccccccccccccchHHHHHHhccCcchHHHHHHHHHHhHHHHHHhhhccCC
Confidence 33456999999999999899999974220 0144557889999998877666643
No 161
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=23.95 E-value=1.2e+02 Score=17.63 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=10.4
Q ss_pred CCCCCCceEEEeeEEEEEEe
Q 026559 196 CDQCQNVKYEREGYFVTVDI 215 (237)
Q Consensus 196 C~~C~G~g~~~~~~~~~V~I 215 (237)
|+.|.|.-......+..+.+
T Consensus 1 C~~C~~~~~~~~~~~~~~~~ 20 (46)
T TIGR03831 1 CPICGGEELEGKTTTETYEY 20 (46)
T ss_pred CCCCCCceecceEEEEEEEe
Confidence 77785544444444544443
No 162
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=23.73 E-value=34 Score=37.25 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=21.9
Q ss_pred ccccccceEEEE-EecCceeEEeeeccCCCCCCceEEEee
Q 026559 170 RRCNCRNEVYHK-QIGPGMFQQMTEQVCDQCQNVKYEREG 208 (237)
Q Consensus 170 ~~C~g~G~v~~~-~~~~g~~~~~~~~~C~~C~G~g~~~~~ 208 (237)
+.|+|.|.+... +..|.. .-+|+.|+|.++..+.
T Consensus 1611 ~~C~G~G~i~i~m~fl~dv-----~~~C~~C~G~R~~~e~ 1645 (1809)
T PRK00635 1611 SDCWGLGYQWIDRAFYALE-----KRPCPTCSGFRIQPLA 1645 (1809)
T ss_pred CCCccCceEEEecccCCCc-----ccCCCCCCCcCCCHHH
Confidence 357788876544 222222 3489999998877654
No 163
>CHL00030 rpl23 ribosomal protein L23
Probab=22.94 E-value=77 Score=22.65 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=17.1
Q ss_pred ecCCCCCCCHHHHHHHHHHH
Q 026559 30 VLQVPRGASDEQIKRAYRKL 49 (237)
Q Consensus 30 iLgv~~~a~~~eIk~ayr~l 49 (237)
.+-|+++|+..|||+|..++
T Consensus 23 ~F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56689999999999998766
No 164
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal. These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.
Probab=22.83 E-value=76 Score=20.43 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=16.7
Q ss_pred EEEEEecCCCCCCcEEEEe
Q 026559 210 FVTVDIEKGMQDGQVSFIK 228 (237)
Q Consensus 210 ~~~V~Ip~G~~~G~~i~l~ 228 (237)
=++|.||.=++.|++|++.
T Consensus 29 G~~i~VP~FI~~Gd~I~V~ 47 (56)
T smart00841 29 GAVVQVPLFINEGDKIKVD 47 (56)
T ss_pred CCEEEcCCcccCCCEEEEE
Confidence 3689999999999999885
No 165
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=21.11 E-value=98 Score=19.32 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=12.9
Q ss_pred ccCCCCCCceEEEeeEEEEE
Q 026559 194 QVCDQCQNVKYEREGYFVTV 213 (237)
Q Consensus 194 ~~C~~C~G~g~~~~~~~~~V 213 (237)
..||.|.+..+-..+-+|.|
T Consensus 14 ~~Cp~CGN~~vGngEG~liV 33 (49)
T PF12677_consen 14 CKCPKCGNDKVGNGEGTLIV 33 (49)
T ss_pred ccCcccCCcEeecCcceEEE
Confidence 36888887666655555543
No 166
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=21.00 E-value=69 Score=27.29 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhcc
Q 026559 65 NKRFAEINNAYEVLSD 80 (237)
Q Consensus 65 ~~~f~~i~~Ay~~L~d 80 (237)
..+.++||||+|+|+.
T Consensus 127 RRRLkKVNEAFE~LKR 142 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLKR 142 (284)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4578999999999764
No 167
>PRK11712 ribonuclease G; Provisional
Probab=20.86 E-value=56 Score=30.69 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=16.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCC
Q 026559 31 LQVPRGASDEQIKRAYRKLALKYHPD 56 (237)
Q Consensus 31 Lgv~~~a~~~eIk~ayr~la~~~hPD 56 (237)
.|||+....++-++..+.++....|+
T Consensus 139 vgiSrKI~de~~R~rLk~i~~~~~~~ 164 (489)
T PRK11712 139 VGVSQRIESEEERERLKKIVAPYCDE 164 (489)
T ss_pred eeEecCCCChHHHHHHHHHHHhhCCC
Confidence 56666666666666666666665555
No 168
>PRK11032 hypothetical protein; Provisional
Probab=20.65 E-value=1e+02 Score=24.35 Aligned_cols=14 Identities=21% Similarity=0.859 Sum_probs=11.4
Q ss_pred ccCCCCCCceEEEe
Q 026559 194 QVCDQCQNVKYERE 207 (237)
Q Consensus 194 ~~C~~C~G~g~~~~ 207 (237)
.+|++|.+..+.+.
T Consensus 143 ~pCp~C~~~~F~R~ 156 (160)
T PRK11032 143 PLCPKCGHDQFQRR 156 (160)
T ss_pred CCCCCCCCCeeeeC
Confidence 48999999887764
No 169
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=20.62 E-value=1.9e+02 Score=23.65 Aligned_cols=22 Identities=14% Similarity=-0.147 Sum_probs=18.7
Q ss_pred eEEEEEEecCCCCCCcEEEEee
Q 026559 208 GYFVTVDIEKGMQDGQVSFIKF 229 (237)
Q Consensus 208 ~~~~~V~Ip~G~~~G~~i~l~g 229 (237)
.++|+|.||+-.-++.-|++..
T Consensus 69 ~EtIKl~lP~~~~~~~HL~Ftf 90 (196)
T cd08694 69 FETFKVAIPIEDFKSSHLRFTF 90 (196)
T ss_pred ceeEEEecChhhCCCeEEEEEE
Confidence 4789999999999999888865
No 170
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=20.53 E-value=2.2e+02 Score=23.94 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=31.1
Q ss_pred ceecCCCCCCCHHH-HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhc
Q 026559 28 YEVLQVPRGASDEQ-IKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLS 79 (237)
Q Consensus 28 y~iLgv~~~a~~~e-Ik~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~ 79 (237)
++|=|=+.-.+.+. ++|+|++||.-.--..-..+ .+.+..+-|-|++|.
T Consensus 83 w~ir~e~~ll~~~~l~~ksykqla~d~gmqi~~~~---~~hm~~~le~y~~Lk 132 (268)
T PTZ00043 83 WRIRGESTLLDPETLPKKSYKQLARDMGMQIVNEP---SEHMLGLLELYEYLK 132 (268)
T ss_pred heecccccccChhhcchHHHHHHHHHhCceecCCc---hHHHHHHHHHHHhcC
Confidence 45555444344444 79999999986543333222 256777789999886
No 171
>PHA03420 E4 protein; Provisional
Probab=20.18 E-value=1.1e+02 Score=22.86 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=21.6
Q ss_pred EEEeeEEEEEEecCCCCCCcEEEEeee
Q 026559 204 YEREGYFVTVDIEKGMQDGQVSFIKFK 230 (237)
Q Consensus 204 ~~~~~~~~~V~Ip~G~~~G~~i~l~g~ 230 (237)
++..+..|+|+|--|+.||-.++|..+
T Consensus 109 ViPVedsVTVTVTvgv~NGpEltLtFq 135 (137)
T PHA03420 109 VIPVEDSVTVTVTVGVGNGPELTLTFQ 135 (137)
T ss_pred EEecCCCeEEEEEEecCCCCeEEEEEE
Confidence 455677788888889999999998764
No 172
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=20.18 E-value=1.4e+02 Score=22.13 Aligned_cols=14 Identities=21% Similarity=0.672 Sum_probs=7.7
Q ss_pred CCCcceecCCCCCC
Q 026559 24 GKSYYEVLQVPRGA 37 (237)
Q Consensus 24 ~~~~y~iLgv~~~a 37 (237)
..+|++.|||+=+.
T Consensus 18 AEdff~ff~V~YDp 31 (113)
T PRK00810 18 AEEFFQLLGVPYDP 31 (113)
T ss_pred HHHHHHHhCCCCCH
Confidence 34566666665443
No 173
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=20.11 E-value=1.3e+02 Score=18.58 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=19.6
Q ss_pred ceecCCCCCCCHHHHHHHHHHHHH
Q 026559 28 YEVLQVPRGASDEQIKRAYRKLAL 51 (237)
Q Consensus 28 y~iLgv~~~a~~~eIk~ayr~la~ 51 (237)
+.+=|+.|..+++|.|+.-|+-..
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456789999999999998887554
Done!