Query 026559
Match_columns 237
No_of_seqs 221 out of 2142
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 16:28:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 5.7E-40 2E-44 286.6 8.5 180 22-236 25-208 (329)
2 1bq0_A DNAJ, HSP40; chaperone, 99.9 2.9E-26 9.8E-31 168.2 3.8 97 24-122 2-99 (103)
3 1hdj_A Human HSP40, HDJ-1; mol 99.9 3.7E-24 1.3E-28 148.8 5.5 72 24-96 2-73 (77)
4 2ctr_A DNAJ homolog subfamily 99.9 5.5E-24 1.9E-28 151.6 5.0 75 22-97 4-78 (88)
5 2dn9_A DNAJ homolog subfamily 99.9 4.8E-24 1.6E-28 148.9 4.3 73 22-94 4-76 (79)
6 2ej7_A HCG3 gene; HCG3 protein 99.9 1.7E-23 5.7E-28 147.2 5.1 74 22-95 6-80 (82)
7 2o37_A Protein SIS1; HSP40, J- 99.9 9.4E-24 3.2E-28 151.6 3.8 76 20-98 3-78 (92)
8 2och_A Hypothetical protein DN 99.9 2.1E-23 7.3E-28 143.4 4.8 71 20-93 3-73 (73)
9 2dmx_A DNAJ homolog subfamily 99.9 2.6E-23 8.8E-28 149.4 5.1 76 22-97 6-82 (92)
10 2ctp_A DNAJ homolog subfamily 99.9 1.8E-23 6.1E-28 145.6 3.6 72 22-94 4-75 (78)
11 2yua_A Williams-beuren syndrom 99.9 3.7E-23 1.3E-27 150.5 4.1 69 22-90 14-82 (99)
12 2cug_A Mkiaa0962 protein; DNAJ 99.9 5.2E-23 1.8E-27 146.5 4.5 72 22-94 14-85 (88)
13 1nlt_A Protein YDJ1, mitochond 99.9 9E-22 3.1E-26 165.6 12.8 106 130-236 7-139 (248)
14 2ctw_A DNAJ homolog subfamily 99.9 4.4E-23 1.5E-27 152.6 4.1 77 21-97 13-89 (109)
15 2ctq_A DNAJ homolog subfamily 99.9 2.9E-23 9.8E-28 154.4 3.0 75 22-96 17-91 (112)
16 2lgw_A DNAJ homolog subfamily 99.9 4.7E-23 1.6E-27 149.8 4.1 73 25-97 2-75 (99)
17 3apq_A DNAJ homolog subfamily 99.8 5.2E-22 1.8E-26 162.6 5.9 91 25-122 2-92 (210)
18 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 3.1E-22 1.1E-26 148.1 1.9 73 21-93 11-87 (109)
19 1wjz_A 1700030A21RIK protein; 99.8 5.8E-22 2E-26 142.8 3.3 70 22-91 13-88 (94)
20 2ys8_A RAB-related GTP-binding 99.8 2.3E-20 7.8E-25 133.3 6.6 65 21-86 23-87 (90)
21 1n4c_A Auxilin; four helix bun 99.8 6.5E-20 2.2E-24 146.1 4.8 74 14-87 106-182 (182)
22 2l6l_A DNAJ homolog subfamily 99.8 5.6E-20 1.9E-24 144.2 4.0 71 22-92 7-83 (155)
23 1gh6_A Large T antigen; tumor 99.8 2E-20 7E-25 138.9 0.8 65 24-92 7-73 (114)
24 1faf_A Large T antigen; J doma 99.8 4.6E-20 1.6E-24 128.5 2.5 66 25-95 11-78 (79)
25 2qwo_B Putative tyrosine-prote 99.8 7.5E-20 2.6E-24 130.3 3.6 67 14-80 22-91 (92)
26 2pf4_E Small T antigen; PP2A, 99.8 3.7E-20 1.3E-24 146.6 0.2 65 24-92 10-76 (174)
27 1iur_A KIAA0730 protein; DNAJ 99.8 1.8E-19 6.3E-24 127.7 3.2 62 24-85 15-77 (88)
28 3ag7_A Putative uncharacterize 99.7 3.2E-19 1.1E-23 130.8 2.5 64 19-83 35-105 (106)
29 3hho_A CO-chaperone protein HS 99.7 6E-19 2E-23 140.7 3.5 68 23-90 2-76 (174)
30 3apo_A DNAJ homolog subfamily 99.7 4.1E-19 1.4E-23 171.0 0.5 78 21-98 17-94 (780)
31 1fpo_A HSC20, chaperone protei 99.7 1.7E-18 5.8E-23 137.7 2.5 65 26-90 2-73 (171)
32 3bvo_A CO-chaperone protein HS 99.7 4.4E-18 1.5E-22 139.1 3.6 67 23-89 41-114 (207)
33 2guz_A Mitochondrial import in 99.7 9.3E-18 3.2E-22 114.4 3.5 57 25-85 14-71 (71)
34 3uo3_A J-type CO-chaperone JAC 99.7 1.2E-17 4E-22 133.8 2.1 67 21-90 7-80 (181)
35 3agx_A DNAJ homolog subfamily 99.6 1.8E-15 6.2E-20 121.3 7.3 69 134-236 2-70 (181)
36 2ctt_A DNAJ homolog subfamily 99.4 1.3E-14 4.3E-19 106.1 -1.2 79 134-215 1-103 (104)
37 2q2g_A HSP40 protein, heat sho 99.4 1.4E-12 4.7E-17 104.4 8.5 66 133-234 2-67 (180)
38 2y4t_A DNAJ homolog subfamily 99.2 1.9E-11 6.6E-16 107.9 7.3 69 21-89 378-449 (450)
39 1c3g_A Heat shock protein 40; 99.2 6.1E-11 2.1E-15 93.9 8.4 62 135-235 1-62 (170)
40 2guz_B Mitochondrial import in 99.0 1.6E-10 5.4E-15 76.6 3.9 51 26-80 5-58 (65)
41 3i38_A Putative chaperone DNAJ 98.4 1.6E-07 5.3E-12 68.8 3.9 55 132-234 9-63 (109)
42 1xao_A YDJ1, mitochondrial pro 98.2 7.9E-07 2.7E-11 66.2 4.4 56 132-234 4-61 (121)
43 1c3g_A Heat shock protein 40; 97.8 1.3E-05 4.3E-10 63.1 4.4 56 131-233 83-138 (170)
44 2q2g_A HSP40 protein, heat sho 97.8 1.6E-05 5.4E-10 63.2 4.5 56 131-233 89-144 (180)
45 3agx_A DNAJ homolog subfamily 97.8 1.6E-05 5.5E-10 63.2 4.4 56 131-233 89-144 (181)
46 1exk_A DNAJ protein; extended 97.7 1.4E-05 4.9E-10 54.6 2.6 50 151-205 1-62 (79)
47 1nlt_A Protein YDJ1, mitochond 97.6 3E-05 1E-09 64.7 3.3 56 131-233 158-215 (248)
48 3lz8_A Putative chaperone DNAJ 97.5 5.2E-05 1.8E-09 65.8 3.8 54 132-233 229-282 (329)
49 2pzi_A Probable serine/threoni 94.4 0.053 1.8E-06 50.9 5.9 53 17-77 621-675 (681)
50 3lcz_A YCZA, inhibitor of trap 92.3 0.035 1.2E-06 34.6 0.7 15 194-208 24-38 (53)
51 2bx9_A Anti-trap, AT, tryptoph 87.7 0.17 5.7E-06 31.5 1.0 14 194-207 24-37 (53)
52 3pmq_A Decaheme cytochrome C M 69.5 0.25 8.4E-06 46.5 -4.0 32 138-169 168-200 (669)
53 3ga8_A HTH-type transcriptiona 47.3 40 0.0014 21.9 5.1 30 195-229 4-33 (78)
54 2cqn_A Formin-binding protein 40.3 18 0.00062 23.9 2.4 54 37-91 6-62 (77)
55 4a3n_A Transcription factor SO 34.3 29 0.00099 21.7 2.7 41 43-88 14-54 (71)
56 3nm9_A HMG-D, high mobility gr 34.0 58 0.002 20.5 4.2 37 44-88 16-52 (73)
57 1i11_A Transcription factor SO 33.3 42 0.0014 21.7 3.5 40 44-88 17-56 (81)
58 1ckt_A High mobility group 1 p 33.1 54 0.0018 20.4 3.9 40 46-88 16-55 (71)
59 1hme_A High mobility group pro 32.6 58 0.002 20.7 4.0 40 44-88 19-58 (77)
60 1uzc_A Hypothetical protein FL 31.2 42 0.0015 21.7 3.0 21 36-56 11-31 (71)
61 2crj_A SWI/SNF-related matrix- 31.0 48 0.0016 22.1 3.5 40 44-88 20-59 (92)
62 3f27_D Transcription factor SO 28.2 48 0.0016 21.5 3.1 41 43-88 18-58 (83)
63 1r5q_A KAI A, circadian oscill 27.6 1E+02 0.0035 21.2 4.5 33 40-75 12-44 (102)
64 2b7e_A PRE-mRNA processing pro 26.8 39 0.0013 21.1 2.1 48 40-90 3-55 (59)
65 2cs1_A PMS1 protein homolog 1; 26.0 45 0.0015 22.3 2.6 40 44-88 20-59 (92)
66 1wgf_A Upstream binding factor 25.5 43 0.0015 22.3 2.4 41 44-89 33-73 (90)
67 2eqz_A High mobility group pro 25.0 49 0.0017 21.7 2.6 42 44-88 28-69 (86)
68 2d7l_A WD repeat and HMG-box D 24.2 41 0.0014 22.1 2.1 42 44-89 18-59 (81)
69 3i8t_A Galectin-4; S-type lect 24.2 75 0.0026 23.9 3.8 25 208-232 28-52 (164)
70 1cf7_A Protein (transcription 23.6 64 0.0022 21.1 2.9 44 36-90 9-52 (76)
71 1qqr_A Streptokinase domain B; 23.3 50 0.0017 24.3 2.5 30 27-56 34-63 (138)
72 1v2z_A Circadian clock protein 23.0 1.1E+02 0.0037 21.4 4.0 33 40-75 19-51 (111)
73 3u2b_C Transcription factor SO 22.0 62 0.0021 20.6 2.6 40 44-88 15-54 (79)
74 1wz6_A HMG-box transcription f 21.9 48 0.0016 21.5 2.1 40 44-88 20-59 (82)
75 2e6o_A HMG box-containing prot 21.8 61 0.0021 21.3 2.6 40 44-88 30-69 (87)
76 1gt0_D Transcription factor SO 21.8 49 0.0017 21.3 2.1 39 45-88 16-54 (80)
77 4euw_A Transcription factor SO 21.8 61 0.0021 22.3 2.7 41 43-88 41-81 (106)
78 1j46_A SRY, sex-determining re 21.6 60 0.002 21.2 2.5 40 44-88 17-56 (85)
79 1hry_A Human SRY; DNA, DNA-bin 21.1 50 0.0017 20.9 2.0 40 44-88 17-56 (76)
80 2lef_A LEF-1 HMG, protein (lym 21.1 63 0.0022 21.1 2.6 39 45-88 16-54 (86)
81 1x50_A Galectin-4; GAL-BIND le 20.7 91 0.0031 23.4 3.7 25 209-233 27-51 (164)
82 1ny9_A Transcriptional activat 20.5 86 0.0029 22.7 3.4 24 66-91 100-123 (143)
83 1yfb_A Transition state regula 20.5 73 0.0025 19.7 2.5 26 207-232 18-49 (59)
84 2o70_A OHCU decarboxylase; URI 20.4 2.6E+02 0.0091 21.1 6.3 44 33-76 35-112 (174)
85 2co9_A Thymus high mobility gr 20.4 64 0.0022 22.0 2.5 40 44-88 30-69 (102)
86 1k99_A Upstream binding factor 20.2 79 0.0027 21.4 3.0 40 44-88 23-62 (99)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=5.7e-40 Score=286.57 Aligned_cols=180 Identities=27% Similarity=0.369 Sum_probs=58.4
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCC
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG 101 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~ 101 (237)
+..+|||+||||+++|+.+|||+|||+||++||||+++.+ .|+++|++|++||++|+||.+|+.||+|+..+.......
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~ 103 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGR 103 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-HHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCccc
Confidence 3458999999999999999999999999999999999865 488999999999999999999999999854421111000
Q ss_pred -CC-CCCCc-cCChhhhhhhccCCCC-CCCccccccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccce
Q 026559 102 -GG-RGGGM-GVNIQDIFSSFFGGGP-MEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNE 177 (237)
Q Consensus 102 -~~-~~~~~-~~~~~d~F~~fFg~~~-~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~ 177 (237)
.+ .+++| +.++.|+|++|||++. ....+.+.+|.|+.++|.|||+|+|+|++++|.+++.+|+ +.|
T Consensus 104 ~~~~~~~~f~~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~---------g~G- 173 (329)
T 3lz8_A 104 QRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN---------VFG- 173 (329)
T ss_dssp ---------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC---------SCC-
T ss_pred ccccccCCcCCCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec---------CCe-
Confidence 00 01112 1267899999998632 1112335689999999999999999999999999887642 112
Q ss_pred EEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCCC
Q 026559 178 VYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQIN 236 (237)
Q Consensus 178 v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~~ 236 (237)
..++...++++|+||||+++|++|+|+|+|++..|
T Consensus 174 ------------------------~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~ 208 (329)
T 3lz8_A 174 ------------------------MIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGEN 208 (329)
T ss_dssp -------------------------CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC--
T ss_pred ------------------------EEEEecceEEEEeCCCCCCCCCEEEEcccccCCCC
Confidence 12234467899999999999999999999998653
No 2
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.92 E-value=2.9e-26 Score=168.20 Aligned_cols=97 Identities=49% Similarity=0.981 Sum_probs=70.2
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCC
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 103 (237)
..|||+||||+++|+.++||+|||+|++++|||+++.+++++++|++|++||++|+||.+|..||.+|++++.....+++
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~ 81 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG 81 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCC
Confidence 57999999999999999999999999999999999865568899999999999999999999999999988764321111
Q ss_pred C-CCCccCChhhhhhhccCC
Q 026559 104 R-GGGMGVNIQDIFSSFFGG 122 (237)
Q Consensus 104 ~-~~~~~~~~~d~F~~fFg~ 122 (237)
+ ++++ ++.++|++||++
T Consensus 82 ~~~~~~--~~~~~f~~~f~~ 99 (103)
T 1bq0_A 82 GFGGGA--DFSDIFGDVFGD 99 (103)
T ss_dssp --------------------
T ss_pred CCCCCC--CHHHHHHHHHHh
Confidence 1 1111 456677777754
No 3
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.89 E-value=3.7e-24 Score=148.75 Aligned_cols=72 Identities=63% Similarity=1.075 Sum_probs=67.5
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccc
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK 96 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 96 (237)
..|||+||||+++|+.++||+|||++++++|||+++.+. +.+.|++|++||++|+||.+|..||.+|.+++.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 579999999999999999999999999999999998654 889999999999999999999999999988765
No 4
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=5.5e-24 Score=151.61 Aligned_cols=75 Identities=49% Similarity=0.854 Sum_probs=68.9
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccccccccccc
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 97 (237)
....|||+||||+++|+.+|||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|..||.+|..++..
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 78 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS 78 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence 346799999999999999999999999999999999985 458899999999999999999999999999887653
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=4.8e-24 Score=148.91 Aligned_cols=73 Identities=47% Similarity=0.830 Sum_probs=67.9
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccc
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG 94 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 94 (237)
....|||+||||+++|+.++||+|||+|++++|||+++..++++++|++|++||++|+||.+|..||.+|..+
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 3467999999999999999999999999999999999876668899999999999999999999999998765
No 6
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.7e-23 Score=147.16 Aligned_cols=74 Identities=61% Similarity=0.955 Sum_probs=67.9
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHhhccccccccccccccccc
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGL 95 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 95 (237)
....|||+||||+++++.++||+|||++++++|||+++.. ..++++|++|++||++|+||.+|..||.+|+.++
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 4457999999999999999999999999999999999865 3588999999999999999999999999997764
No 7
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.4e-24 Score=151.63 Aligned_cols=76 Identities=41% Similarity=0.815 Sum_probs=68.8
Q ss_pred HhhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccc
Q 026559 20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH 98 (237)
Q Consensus 20 ~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~ 98 (237)
.+....|||+||||+++|+.++||+|||+|++++|||+++.+. ++|++|++||++|+||.+|..||++|.+++...
T Consensus 3 ~m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 78 (92)
T 2o37_A 3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILNDPQKREIYDQYGLEAARSG 78 (92)
T ss_dssp -CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCH---HHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred ccccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChH---HHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence 3556789999999999999999999999999999999997654 699999999999999999999999998887643
No 8
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.88 E-value=2.1e-23 Score=143.43 Aligned_cols=71 Identities=52% Similarity=0.891 Sum_probs=62.7
Q ss_pred HhhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccccccc
Q 026559 20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEE 93 (237)
Q Consensus 20 ~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 93 (237)
.+....+||+||||+++|+.++||+|||++++++|||+++.. .+.|++|++||++|+||.+|..||++|++
T Consensus 3 ~m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 3 AMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp ---CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 356678999999999999999999999999999999999754 47999999999999999999999999863
No 9
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.6e-23 Score=149.37 Aligned_cols=76 Identities=54% Similarity=0.836 Sum_probs=69.3
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHhhccccccccccccccccccc
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 97 (237)
....|||+||||+++|+.++||+|||+|++++|||+++.. ..++++|++|++||++|+||.+|..||.+|.+++..
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 3457999999999999999999999999999999999765 358899999999999999999999999999887654
No 10
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-23 Score=145.64 Aligned_cols=72 Identities=51% Similarity=0.868 Sum_probs=66.7
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccc
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG 94 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 94 (237)
....|||+||||+++|+.++||+|||++++++|||+++.+ .+.+.|++|++||++|+||.+|..||.+|.++
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-GATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 4568999999999999999999999999999999999754 48899999999999999999999999998765
No 11
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.7e-23 Score=150.48 Aligned_cols=69 Identities=41% Similarity=0.689 Sum_probs=64.7
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccc
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTY 90 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~ 90 (237)
+...+||+||||+++|+.++||+|||+|+++||||+++.++++.++|++|++||++|+||.+|..||..
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 82 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG 82 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 456799999999999999999999999999999999987666899999999999999999999999984
No 12
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=5.2e-23 Score=146.54 Aligned_cols=72 Identities=47% Similarity=0.738 Sum_probs=66.5
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccc
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG 94 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 94 (237)
....|||+||||+++|+.++||+|||++++++|||+++.+. +++.|++|++||++|+||.+|..||.+|+.+
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG-AEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTT-HHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChh-HHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 34679999999999999999999999999999999998654 8899999999999999999999999998754
No 13
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.87 E-value=9e-22 Score=165.56 Aligned_cols=106 Identities=32% Similarity=0.547 Sum_probs=91.5
Q ss_pred ccccCCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC----------ccccccceEEEE-EecCceeEEee-----
Q 026559 130 KIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------RRCNCRNEVYHK-QIGPGMFQQMT----- 192 (237)
Q Consensus 130 ~~~kg~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~----------~~C~g~G~v~~~-~~~~g~~~~~~----- 192 (237)
++++|+|+++.|.|||||+|+|++++|.+++. .|..|.|+ +.|+|+|.+... +.++ ++++.+
T Consensus 7 ~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~ 85 (248)
T 1nlt_A 7 GPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV 85 (248)
T ss_dssp -CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred CCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence 34689999999999999999999999999986 58899887 468999986544 6776 554443
Q ss_pred ----------eccCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEeeecccCCC
Q 026559 193 ----------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKFKCDWQIN 236 (237)
Q Consensus 193 ----------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g~g~~~~~ 236 (237)
+++|+.|+|.|++++.++++|+||||+++|++|+|+|+||+..+
T Consensus 86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~ 139 (248)
T 1nlt_A 86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPD 139 (248)
T ss_dssp CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTT
T ss_pred CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCC
Confidence 68999999999999999999999999999999999999998654
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=4.4e-23 Score=152.62 Aligned_cols=77 Identities=53% Similarity=0.874 Sum_probs=71.1
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccccccccccc
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 97 (237)
.....+||+||||+++|+.++||+|||+|++++|||+++.++++.++|++|++||++|+||.+|..||.+|..++..
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~~ 89 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYV 89 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccccc
Confidence 34568999999999999999999999999999999999877778999999999999999999999999999887653
No 15
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.9e-23 Score=154.39 Aligned_cols=75 Identities=31% Similarity=0.497 Sum_probs=69.3
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccc
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK 96 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 96 (237)
....|||+||||+++|+.++||+|||+|++++|||+++.+++++++|++|++||++|+||.+|..||++|..++.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 446899999999999999999999999999999999986666899999999999999999999999999987653
No 16
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.87 E-value=4.7e-23 Score=149.76 Aligned_cols=73 Identities=60% Similarity=1.008 Sum_probs=65.2
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHhhccccccccccccccccccc
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ 97 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 97 (237)
.|||+||||+++|+.+|||+|||++++++|||+++.. ..+++.|++|++||++|+||.+|..||.+|.+++..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 5899999999999999999999999999999999865 358899999999999999999999999999887754
No 17
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.85 E-value=5.2e-22 Score=162.62 Aligned_cols=91 Identities=43% Similarity=0.737 Sum_probs=77.0
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccccCCCCC
Q 026559 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGR 104 (237)
Q Consensus 25 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 104 (237)
.|||+||||+++|+.++||+|||+|++++|||+++.++++.++|++|++||++|+||.+|+.||++|+.++....+
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~---- 77 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQG---- 77 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTCS----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccccc----
Confidence 5899999999999999999999999999999999877678999999999999999999999999999888754321
Q ss_pred CCCccCChhhhhhhccCC
Q 026559 105 GGGMGVNIQDIFSSFFGG 122 (237)
Q Consensus 105 ~~~~~~~~~d~F~~fFg~ 122 (237)
+.+ ....+|...||.
T Consensus 78 -~~~--~~~~~~~~~fg~ 92 (210)
T 3apq_A 78 -GQY--ESWSYYRYDFGI 92 (210)
T ss_dssp -CCC--CCHHHHHHSSST
T ss_pred -ccc--cccccccccccc
Confidence 111 344566666653
No 18
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.84 E-value=3.1e-22 Score=148.10 Aligned_cols=73 Identities=37% Similarity=0.590 Sum_probs=66.6
Q ss_pred hhCCCCcceecCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---cHHHHHHHHHHHHHHHhhccccccccccccccc
Q 026559 21 VIAGKSYYEVLQVPRGA-SDEQIKRAYRKLALKYHPDKNQG---NEEANKRFAEINNAYEVLSDSETRNIYDTYGEE 93 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a-~~~eIk~ayr~la~~~hPD~~~~---~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 93 (237)
.....|||+||||+++| +.++||+|||++++++|||+++. .+.+++.|++|++||++|+||.+|..||.++..
T Consensus 11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 44578999999999999 99999999999999999999986 345889999999999999999999999998754
No 19
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.84 E-value=5.8e-22 Score=142.80 Aligned_cols=70 Identities=36% Similarity=0.652 Sum_probs=63.8
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------HHHHHHHHHHHHHHHhhccccccccccccc
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN------EEANKRFAEINNAYEVLSDSETRNIYDTYG 91 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~------~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G 91 (237)
+...|||+||||+++|+.+|||+|||+|++++|||+++.. ..++++|++|++||++|+||.+|..||.+.
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 4467999999999999999999999999999999998742 458899999999999999999999999864
No 20
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-20 Score=133.30 Aligned_cols=65 Identities=31% Similarity=0.468 Sum_probs=59.6
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccc
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 86 (237)
+....|||+||||+++|+.+|||+|||+|+++||||+++... +.++|++|++||++|+||.+|..
T Consensus 23 ~~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 23 IRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-SEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HHTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT-HHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HhcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCcccccC
Confidence 445799999999999999999999999999999999997654 78999999999999999999864
No 21
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.78 E-value=6.5e-20 Score=146.10 Aligned_cols=74 Identities=27% Similarity=0.448 Sum_probs=64.4
Q ss_pred HHHHHhHhhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH---HHHHHHHHHHHHHhhccccccccc
Q 026559 14 ALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE---ANKRFAEINNAYEVLSDSETRNIY 87 (237)
Q Consensus 14 ~~~~~~~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~---a~~~f~~i~~Ay~~L~d~~~r~~y 87 (237)
|..+....+...|||+||||+++|+.++||+|||++++++|||+++.... |+++|++|++||++|+||.+|+.|
T Consensus 106 Lssl~~vl~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 106 LSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp HHHGGGGSCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHhcCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 33344445656899999999999999999999999999999999876542 789999999999999999999987
No 22
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.78 E-value=5.6e-20 Score=144.20 Aligned_cols=71 Identities=34% Similarity=0.612 Sum_probs=64.3
Q ss_pred hCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcH------HHHHHHHHHHHHHHhhcccccccccccccc
Q 026559 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE------EANKRFAEINNAYEVLSDSETRNIYDTYGE 92 (237)
Q Consensus 22 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~------~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 92 (237)
....|||+||||+++|+.++||+|||+|++++|||+++.+. .|.+.|++|++||++|+||.+|+.||..+.
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 44679999999999999999999999999999999987652 367999999999999999999999998653
No 23
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.78 E-value=2e-20 Score=138.87 Aligned_cols=65 Identities=22% Similarity=0.425 Sum_probs=60.6
Q ss_pred CCCcceecCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccc
Q 026559 24 GKSYYEVLQVPRGASD--EQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGE 92 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~--~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 92 (237)
..+||+||||+++|+. ++||+|||+||+++|||+++. .++|++|++||++|+||.+|+.||.+|.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 3689999999999999 999999999999999999875 3699999999999999999999999875
No 24
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.78 E-value=4.6e-20 Score=128.45 Aligned_cols=66 Identities=23% Similarity=0.421 Sum_probs=59.1
Q ss_pred CCcceecCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccccccccc
Q 026559 25 KSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGL 95 (237)
Q Consensus 25 ~~~y~iLgv~~~--a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 95 (237)
.++|+||||+++ ++.++||+|||+|++++|||++++ .++|++|++||++|+|+.+|.. |.||..++
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~ 78 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLR-MNLGGTGF 78 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence 579999999999 999999999999999999999863 3799999999999999999987 56776653
No 25
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.78 E-value=7.5e-20 Score=130.26 Aligned_cols=67 Identities=27% Similarity=0.397 Sum_probs=56.7
Q ss_pred HHHHHhHhhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcH---HHHHHHHHHHHHHHhhcc
Q 026559 14 ALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE---EANKRFAEINNAYEVLSD 80 (237)
Q Consensus 14 ~~~~~~~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~---~a~~~f~~i~~Ay~~L~d 80 (237)
|..+-...+.+.++|++|||++.|+.+|||+|||++|++||||++++++ .|+++|++|++||++|.+
T Consensus 22 L~~l~~~L~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 22 LSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp HHHGGGTSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 3333334455579999999999999999999999999999999998653 378999999999999975
No 26
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.76 E-value=3.7e-20 Score=146.59 Aligned_cols=65 Identities=22% Similarity=0.405 Sum_probs=58.1
Q ss_pred CCCcceecCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccc
Q 026559 24 GKSYYEVLQVPRGAS--DEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGE 92 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~--~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 92 (237)
..|||+||||+++|+ .+|||+|||++|+++|||+++++ ++|++|++||++|+||.+|+.||++|.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~----e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC----TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH----HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 468999999999998 69999999999999999998753 699999999999999999999999996
No 27
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.76 E-value=1.8e-19 Score=127.73 Aligned_cols=62 Identities=29% Similarity=0.400 Sum_probs=56.8
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHhhccccccc
Q 026559 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRN 85 (237)
Q Consensus 24 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~ 85 (237)
..++|+||||+++|+.+|||+|||+|+++||||+++.+ ..|+++|++|++||++|+|...|.
T Consensus 15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35799999999999999999999999999999999876 348899999999999999987774
No 28
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.74 E-value=3.2e-19 Score=130.79 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=55.5
Q ss_pred hHhhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cH----HHHHHHHHHHHHHHhhccccc
Q 026559 19 LNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG---NE----EANKRFAEINNAYEVLSDSET 83 (237)
Q Consensus 19 ~~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~---~~----~a~~~f~~i~~Ay~~L~d~~~ 83 (237)
...+...|||+|||+++ |+.++||+|||++|+++|||+++. ++ .|+++|++|++||++|+|+..
T Consensus 35 ~~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 35 YILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp GTSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 34566789999999996 999999999999999999999763 11 378999999999999999863
No 29
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.74 E-value=6e-19 Score=140.70 Aligned_cols=68 Identities=28% Similarity=0.474 Sum_probs=61.0
Q ss_pred CCCCcceecCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcHH-----HHHHHHHHHHHHHhhcccccccccccc
Q 026559 23 AGKSYYEVLQVPRGAS--DEQIKRAYRKLALKYHPDKNQGNEE-----ANKRFAEINNAYEVLSDSETRNIYDTY 90 (237)
Q Consensus 23 ~~~~~y~iLgv~~~a~--~~eIk~ayr~la~~~hPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~r~~yD~~ 90 (237)
...|||+||||+++++ .++||+|||+|+++||||+++.... |.+.|+.|++||++|+||.+|..||..
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 3579999999999998 9999999999999999999876542 678999999999999999999999973
No 30
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.72 E-value=4.1e-19 Score=170.98 Aligned_cols=78 Identities=46% Similarity=0.792 Sum_probs=40.9
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccccccccccc
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH 98 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~ 98 (237)
.....|||+||||+++|+.+|||+|||+||+++|||+++.+++++++|++|++||++|+||.+|+.||++|++++...
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 445689999999999999999999999999999999997666789999999999999999999999999999887643
No 31
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.71 E-value=1.7e-18 Score=137.66 Aligned_cols=65 Identities=25% Similarity=0.431 Sum_probs=60.1
Q ss_pred CcceecCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcH-----HHHHHHHHHHHHHHhhcccccccccccc
Q 026559 26 SYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDTY 90 (237)
Q Consensus 26 ~~y~iLgv~~~a--~~~eIk~ayr~la~~~hPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~yD~~ 90 (237)
|||+||||++++ +.++||++||+|+++||||+++..+ .|.+.|+.|++||++|+||.+|..||..
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 73 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS 73 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 799999999999 9999999999999999999987653 2567999999999999999999999975
No 32
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.70 E-value=4.4e-18 Score=139.08 Aligned_cols=67 Identities=21% Similarity=0.404 Sum_probs=60.2
Q ss_pred CCCCcceecCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcH-----HHHHHHHHHHHHHHhhccccccccccc
Q 026559 23 AGKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 23 ~~~~~y~iLgv~~~--a~~~eIk~ayr~la~~~hPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
...|||+||||++. ++.++||++||+|++++|||+++.+. .|.++|++|++||++|+||.+|..||.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 35799999999986 78999999999999999999987542 266789999999999999999999995
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.3e-18 Score=114.40 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=51.3
Q ss_pred CCcceecCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccc
Q 026559 25 KSYYEVLQVPR-GASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRN 85 (237)
Q Consensus 25 ~~~y~iLgv~~-~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 85 (237)
.++|+||||++ +++.++||+|||+|++++|||++++ .+.|++|++||++|+++..|+
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhcC
Confidence 57899999999 7999999999999999999999753 369999999999999987663
No 34
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.66 E-value=1.2e-17 Score=133.79 Aligned_cols=67 Identities=25% Similarity=0.487 Sum_probs=60.2
Q ss_pred hhCCCCcceec------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccc
Q 026559 21 VIAGKSYYEVL------QVPR-GASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTY 90 (237)
Q Consensus 21 ~~~~~~~y~iL------gv~~-~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~ 90 (237)
.....|||+|| |+++ +|+.++||+|||+|++++|||+++. +.++|++|++||++|+||.+|..||..
T Consensus 7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 44568999999 4665 8999999999999999999999975 567999999999999999999999973
No 35
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=99.59 E-value=1.8e-15 Score=121.30 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=59.9
Q ss_pred CCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEE
Q 026559 134 GDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTV 213 (237)
Q Consensus 134 g~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V 213 (237)
++|+++.|.|||||+|+|+++++.+++ +|+.|+|.+++++.++++|
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~----------------------------------~c~~c~G~g~~~~~~~l~V 47 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH----------------------------------KRLNPDGKSIRNEDKILTI 47 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE----------------------------------EEECTTSSCEEEEEEEEEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec----------------------------------ccCCCCCceEEEEeEEEEE
Confidence 468999999999999999999997653 5778999999999999999
Q ss_pred EecCCCCCCcEEEEeeecccCCC
Q 026559 214 DIEKGMQDGQVSFIKFKCDWQIN 236 (237)
Q Consensus 214 ~Ip~G~~~G~~i~l~g~g~~~~~ 236 (237)
+||||+++|++|+|+|+|++..|
T Consensus 48 ~Ip~G~~~G~~ir~~G~G~~~~~ 70 (181)
T 3agx_A 48 EVKKGWKEGTKITFPKEGDQTSN 70 (181)
T ss_dssp EECTTCCTTCEEEETTCSCCCSS
T ss_pred EECCCccCCcEEEEeeccccCCC
Confidence 99999999999999999998754
No 36
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-14 Score=106.13 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=64.2
Q ss_pred CCceEEEEcccHHHHhcCceeEEEeeee-eecCCCCC-----------ccccccceEEEEEecCceeEEee---------
Q 026559 134 GDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQMT--------- 192 (237)
Q Consensus 134 g~di~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~-----------~~C~g~G~v~~~~~~~g~~~~~~--------- 192 (237)
|.|+.++|.|||||||+|++++|.+++. .|..|.|+ +.|+|+|.+...+ |++++.+
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~---G~~~~~~~C~~C~G~G 77 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT---GPFVMRSTCRRCGGRG 77 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE---TTEEEEEECSSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe---CCEEEEEECCcCCCcc
Confidence 5688999999999999999999999886 58889876 4588999876554 4343322
Q ss_pred ---eccCCCCCCceEEEeeEEEEEEe
Q 026559 193 ---EQVCDQCQNVKYEREGYFVTVDI 215 (237)
Q Consensus 193 ---~~~C~~C~G~g~~~~~~~~~V~I 215 (237)
+++|+.|+|.|+++++++|+|+|
T Consensus 78 ~~i~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 78 SIIISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp EECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred eECCCcCCCCCCeeEEEEEEEEEEEc
Confidence 67999999999999999888875
No 37
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=99.37 E-value=1.4e-12 Score=104.38 Aligned_cols=66 Identities=27% Similarity=0.293 Sum_probs=56.8
Q ss_pred cCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEEE
Q 026559 133 KGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVT 212 (237)
Q Consensus 133 kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~ 212 (237)
++.|+++.|.|||||+|+|+++++.+++.+.| . .+++++.++++
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c--------------------------------~----~g~~~~~~~l~ 45 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFI--------------------------------E----HKVRNEENIVE 45 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEEE--------------------------------T----TEEEEEEEEEE
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEec--------------------------------C----CceEEeeEEEE
Confidence 47899999999999999999999998876531 1 15778889999
Q ss_pred EEecCCCCCCcEEEEeeecccC
Q 026559 213 VDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 213 V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
|+||||+++|++|+|+|+|+++
T Consensus 46 V~Ip~G~~~G~~ir~~g~G~~g 67 (180)
T 2q2g_A 46 VEIKPGWKDGTKLTYSGEGDQE 67 (180)
T ss_dssp EEECTTCCTTCEEEETTCSCCS
T ss_pred EEECCCCcCCcEEEEeeccCCC
Confidence 9999999999999999999984
No 38
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.20 E-value=1.9e-11 Score=107.90 Aligned_cols=69 Identities=45% Similarity=0.740 Sum_probs=58.4
Q ss_pred hhCCCCcceecCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHHHHhhccccccccccc
Q 026559 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN---EEANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 21 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~hPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
.....++|++||+.+.++.++|+++|+++++++|||+.+.+ ..++++|++|++||++|+||++|..||.
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred cccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 34457999999999999999999999999999999998765 3588999999999999999999999996
No 39
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=99.18 E-value=6.1e-11 Score=93.91 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=52.4
Q ss_pred CceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEEEEE
Q 026559 135 DDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVD 214 (237)
Q Consensus 135 ~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~ 214 (237)
+|+++.|.|||||+|+|+++++++++.. + . |.+ +.++++|+
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~---~---------------------------------~--G~~-~~~~l~V~ 41 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG---P---------------------------------H--GAS-EKTQIDIQ 41 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE---T---------------------------------T--TEE-EEEEEEEE
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec---C---------------------------------C--CcE-EeEEEEEE
Confidence 4899999999999999999999887641 0 1 233 67999999
Q ss_pred ecCCCCCCcEEEEeeecccCC
Q 026559 215 IEKGMQDGQVSFIKFKCDWQI 235 (237)
Q Consensus 215 Ip~G~~~G~~i~l~g~g~~~~ 235 (237)
||||+++|++|+|+|+|+++.
T Consensus 42 Ip~G~~~G~~ir~~g~G~~~~ 62 (170)
T 1c3g_A 42 LKPGWKAGTKITYKNQGDYNP 62 (170)
T ss_dssp CCTTCCTTCEEEESSCSSBCS
T ss_pred eCCCccCCCEEEEeccccCCC
Confidence 999999999999999999653
No 40
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.6e-10 Score=76.63 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=44.6
Q ss_pred CcceecCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcc
Q 026559 26 SYYEVLQVPRG---ASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80 (237)
Q Consensus 26 ~~y~iLgv~~~---a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d 80 (237)
+-|.||||++. ++.++|+++||+|...+|||+.++. .....|++|++.|..
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~----yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF----YLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH----HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHHHH
Confidence 34789999999 9999999999999999999998644 467789999999864
No 41
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=98.42 E-value=1.6e-07 Score=68.77 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=46.6
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+++.|||.||+.|+++.|..- .| .+
T Consensus 9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl----------------------------------------dG--------~~ 40 (109)
T 3i38_A 9 IVGHNLEIVLPLAPWEAALGAKVTVPTL----------------------------------------KE--------SI 40 (109)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------SS--------CE
T ss_pred EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------CC--------CE
Confidence 5789999999999999999999888310 11 37
Q ss_pred EEEecCCCCCCcEEEEeeecccC
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~~ 234 (237)
+|+||+|+++|++++|+|+|-..
T Consensus 41 ~v~ip~g~~~G~~~rl~G~G~p~ 63 (109)
T 3i38_A 41 LLTVPPGSQAGQRLRIKGKGLVS 63 (109)
T ss_dssp EEEECTTCCTTCEEEETTCSCBC
T ss_pred EEeeCCCcCcCeEEEECCccCCC
Confidence 89999999999999999999654
No 42
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=98.25 E-value=7.9e-07 Score=66.20 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=46.8
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
++|.|+.+++.|||.||..|+++.|..- . .+.+
T Consensus 4 R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------d-------G~~~ 36 (121)
T 1xao_A 4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------S-------GDWL 36 (121)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------T-------SCEE
T ss_pred EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------C-------CCEE
Confidence 5789999999999999999999888310 1 1467
Q ss_pred EEEecCC--CCCCcEEEEeeecccC
Q 026559 212 TVDIEKG--MQDGQVSFIKFKCDWQ 234 (237)
Q Consensus 212 ~V~Ip~G--~~~G~~i~l~g~g~~~ 234 (237)
+|+||+| +++|++++|+|+|-..
T Consensus 37 ~v~ip~g~v~~~G~~~rl~G~Gmp~ 61 (121)
T 1xao_A 37 KVGIVPGEVIAPGMRKVIEGKGMPI 61 (121)
T ss_dssp EEEECTTSCCCTTCEEEETTCSCC-
T ss_pred EEEeCCCCeeCCCcEEEECCCCCCC
Confidence 8999999 9999999999999653
No 43
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=97.84 E-value=1.3e-05 Score=63.15 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=46.9
Q ss_pred cccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEE
Q 026559 131 IVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYF 210 (237)
Q Consensus 131 ~~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~ 210 (237)
.+.|.|+.+++.|||.||..|+++.|..- .| ..
T Consensus 83 ~R~G~DL~~~~~Isl~eAllG~~~~v~tl----------------------------------------dG-------~~ 115 (170)
T 1c3g_A 83 KRDGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------DG-------RT 115 (170)
T ss_dssp EEETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------SS-------CE
T ss_pred EEeCCcEeEEEEcCHHHHhCCCeEEeeCC----------------------------------------CC-------CE
Confidence 35799999999999999999999888410 11 36
Q ss_pred EEEEecCCCCCCcEEEEeeeccc
Q 026559 211 VTVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 211 ~~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
++|+||+|+++|++++|+|+|=.
T Consensus 116 ~~i~i~~~t~~g~~~rl~g~G~p 138 (170)
T 1c3g_A 116 LPLSRVQPVQPSQTSTYPGQGMP 138 (170)
T ss_dssp EEEEESSCCCTTCEEECTTCSCB
T ss_pred EEEECCCccCCCcEEEEeCCCCC
Confidence 78899999999999999999954
No 44
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=97.81 E-value=1.6e-05 Score=63.15 Aligned_cols=56 Identities=11% Similarity=-0.005 Sum_probs=46.8
Q ss_pred cccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEE
Q 026559 131 IVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYF 210 (237)
Q Consensus 131 ~~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~ 210 (237)
.+.|.|+.+++.|||.||..|+++.|..- .| ..
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------dG-------~~ 121 (180)
T 2q2g_A 89 TRDDCHLIMKVTIPLVRALTGFTCPVTTL----------------------------------------DN-------RN 121 (180)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------TC-------CE
T ss_pred EEcCCEEEEEEEcCHHHHhCCCEEEeeCC----------------------------------------CC-------CE
Confidence 35799999999999999999999888410 11 35
Q ss_pred EEEEecCCCCCCcEEEEeeeccc
Q 026559 211 VTVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 211 ~~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
++|+||+|+++|++++|+|+|=.
T Consensus 122 v~i~ip~~t~~g~~~rl~g~Gmp 144 (180)
T 2q2g_A 122 LQIPIKEIVNPKTRKIVPNEGMP 144 (180)
T ss_dssp EEEEECSCCCTTCEEEETTCSCB
T ss_pred EEEECCCccCCCEEEEECCcCCC
Confidence 78899999999999999999954
No 45
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=97.80 E-value=1.6e-05 Score=63.17 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=46.8
Q ss_pred cccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEE
Q 026559 131 IVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYF 210 (237)
Q Consensus 131 ~~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~ 210 (237)
.+.|.|+.+++.|||.||..|+++.|..- .| +.
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------dG-------~~ 121 (181)
T 3agx_A 89 KRDGSDVIYPARISLREALCGCTVNVPTL----------------------------------------DG-------RT 121 (181)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------TS-------CE
T ss_pred eeeCCcEEEEEEcCHHHHhCCCEEEeECC----------------------------------------CC-------CE
Confidence 35799999999999999999999888410 11 35
Q ss_pred EEEEecCCCCCCcEEEEeeeccc
Q 026559 211 VTVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 211 ~~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
++|+||+|+++|++++|+|+|=.
T Consensus 122 ~~i~i~~~t~~g~~~rl~g~Gmp 144 (181)
T 3agx_A 122 IPVVFKDVIRPGMRRKVPGEGLP 144 (181)
T ss_dssp EEEEECSCCCTTCEEEETTCSCB
T ss_pred EEEECCCccCCCcEEEECCcCCC
Confidence 78899999999999999999954
No 46
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.73 E-value=1.4e-05 Score=54.59 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=31.6
Q ss_pred CceeEEEeeee-eecCCCCC-----------ccccccceEEEEEecCceeEEeeeccCCCCCCceEE
Q 026559 151 GGSLKVWREKN-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYE 205 (237)
Q Consensus 151 G~~~~i~~~~~-v~~~c~G~-----------~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~ 205 (237)
|++++|.+++. .|..|.|+ +.|+|.|.++..+ |+++. ..+|+.|+|.|.+
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~--~~~C~~C~G~G~~ 62 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ---GFFAV--QQTCPHCQGRGTL 62 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE---TTEEE--EEECTTTTTSSEE
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc---CCCEE--eeECcCCCCccEE
Confidence 56677777765 57888776 4688999876655 55542 2345555555543
No 47
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.60 E-value=3e-05 Score=64.69 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=47.1
Q ss_pred cccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEE
Q 026559 131 IVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYF 210 (237)
Q Consensus 131 ~~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~ 210 (237)
.+.|.|+.+++.|||.||..|.++.|..- ..+.
T Consensus 158 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl-----------------------------------------------dG~~ 190 (248)
T 1nlt_A 158 KRDGDDLVYEAEIDLLTAIAGGEFALEHV-----------------------------------------------SGDW 190 (248)
T ss_dssp EEETTEEEEEEEEEHHHHHHCBCCEEECS-----------------------------------------------SSCE
T ss_pred eeeCCEEEEEEEeCHHHHhcCCEEEEeCC-----------------------------------------------CCCE
Confidence 35799999999999999999999888410 0245
Q ss_pred EEEEecCC--CCCCcEEEEeeeccc
Q 026559 211 VTVDIEKG--MQDGQVSFIKFKCDW 233 (237)
Q Consensus 211 ~~V~Ip~G--~~~G~~i~l~g~g~~ 233 (237)
++|+||+| +++|++++|+|+|=.
T Consensus 191 ~~i~ip~g~vt~~g~~~rl~g~Gmp 215 (248)
T 1nlt_A 191 LKVGIVPGEVIAPGMRKVIEGKGMP 215 (248)
T ss_dssp EECCBCTTTTCSTTCEEEETTCSCB
T ss_pred EEEEeCCCCeeCCCeEEEEcCCCCc
Confidence 78999999 999999999999954
No 48
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=97.52 E-value=5.2e-05 Score=65.76 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=45.0
Q ss_pred ccCCceEEEEcccHHHHhcCceeEEEeeeeeecCCCCCccccccceEEEEEecCceeEEeeeccCCCCCCceEEEeeEEE
Q 026559 132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV 211 (237)
Q Consensus 132 ~kg~di~~~l~vtLee~~~G~~~~i~~~~~v~~~c~G~~~C~g~G~v~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~ 211 (237)
+.|.|+.+++.|||.||..|+++.|..- . ..+
T Consensus 229 R~G~DL~~~~~Isl~eAllG~~v~VptL----------------------------------------d--------G~v 260 (329)
T 3lz8_A 229 IVGHNLEIVLPLAPWEAALGAKVTVPTL----------------------------------------K--------ESI 260 (329)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------S--------SCE
T ss_pred EcCCcEEEEEECCHHHHcCCCeEEEECC----------------------------------------C--------CCE
Confidence 5789999999999999999999888310 0 125
Q ss_pred EEEecCCCCCCcEEEEeeeccc
Q 026559 212 TVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 212 ~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
+|+||+|+++|++++|+|+|=.
T Consensus 261 ~l~ip~gt~~g~~~rl~G~GmP 282 (329)
T 3lz8_A 261 LLTVPPGSQAGQRLRIKGKGLV 282 (329)
T ss_dssp EEEECTTCCTTCEEEETTCSCB
T ss_pred EEEECCCCCCCCEEEEcCCCCC
Confidence 7999999999999999999843
No 49
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.35 E-value=0.053 Score=50.95 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=41.0
Q ss_pred HHhHhhCCCCcceecCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHh
Q 026559 17 YALNVIAGKSYYEVLQVPRGASD--EQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEV 77 (237)
Q Consensus 17 ~~~~~~~~~~~y~iLgv~~~a~~--~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~ 77 (237)
+.+.....+|||.+||++.++.. .+|++|||++|+..+++ .+++..|..|+.|
T Consensus 621 l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 621 LDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp HHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 44456667889999999776655 77999999999965443 3688888888875
No 50
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=92.31 E-value=0.035 Score=34.63 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=12.4
Q ss_pred ccCCCCCCceEEEee
Q 026559 194 QVCDQCQNVKYEREG 208 (237)
Q Consensus 194 ~~C~~C~G~g~~~~~ 208 (237)
++|+.|+|.|++.+.
T Consensus 24 ~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 24 EPCPKCLGKGVILTA 38 (53)
T ss_dssp EECTTTTTSSEEECH
T ss_pred CcCCCCCCcEEEEEE
Confidence 489999999988753
No 51
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=87.74 E-value=0.17 Score=31.49 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=11.6
Q ss_pred ccCCCCCCceEEEe
Q 026559 194 QVCDQCQNVKYERE 207 (237)
Q Consensus 194 ~~C~~C~G~g~~~~ 207 (237)
.+|+.|+|.|.+..
T Consensus 24 ~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 24 TPCPACSGKGVILT 37 (53)
T ss_dssp EECTTTTTSSEEEC
T ss_pred CCCccCCCCccEEE
Confidence 47999999998764
No 52
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=69.55 E-value=0.25 Score=46.50 Aligned_cols=32 Identities=3% Similarity=-0.243 Sum_probs=26.0
Q ss_pred EEEEcccHHHHhcCceeEEEeeee-eecCCCCC
Q 026559 138 IVELDATLEDLYMGGSLKVWREKN-VIKPAPGK 169 (237)
Q Consensus 138 ~~~l~vtLee~~~G~~~~i~~~~~-v~~~c~G~ 169 (237)
.+.+.|+|+|++.|+++++.+.+. .|..|+|+
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGs 200 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSN 200 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSS
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCC
Confidence 467889999999999999988875 47767553
No 53
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=47.34 E-value=40 Score=21.91 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=22.7
Q ss_pred cCCCCCCceEEEeeEEEEEEecCCCCCCcEEEEee
Q 026559 195 VCDQCQNVKYEREGYFVTVDIEKGMQDGQVSFIKF 229 (237)
Q Consensus 195 ~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~l~g 229 (237)
+|+.|.+...+.....+++.+ .|+.+.|+.
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~-----~G~~~~I~~ 33 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTF-----RGRKTVLKG 33 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEE-----TTEEEEEEE
T ss_pred ECCCCCCCeeEeEEEEEEEEE-----CCEEEEEcC
Confidence 799998877777777777766 467777766
No 54
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=40.29 E-value=18 Score=23.87 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc--HHHHHHHHHHHHHHHhhcc-ccccccccccc
Q 026559 37 ASDEQIKRAYRKLALKYHPDKNQGN--EEANKRFAEINNAYEVLSD-SETRNIYDTYG 91 (237)
Q Consensus 37 a~~~eIk~ayr~la~~~hPD~~~~~--~~a~~~f~~i~~Ay~~L~d-~~~r~~yD~~G 91 (237)
.-...++.+|+.+.+...|...... .++...|... .+|..+.+ ..++.+|+.|-
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~-~~fkav~~E~eR~~lFeeYi 62 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKE-PAFEDITLESERKRIFKDFM 62 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTS-HHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccC-HHHHhcCCHHHHHHHHHHHH
Confidence 3456788999999877767766544 3466666655 48998866 56777888764
No 55
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=34.25 E-value=29 Score=21.70 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 43 KRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 43 k~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3455666677788765 3467788999999999777665444
No 56
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=34.01 E-value=58 Score=20.53 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+|...+.-||+.. ..+..+.|.+.|..|++ |..|.
T Consensus 16 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 16 NSARESIKRENPGIK-----VTEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHSSSCC-----HHHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCc---hHHHH
Confidence 445666677788875 34677889999999987 55554
No 57
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=33.32 E-value=42 Score=21.70 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++
T Consensus 17 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 17 KDERRKILQAFPDMH-----NSNISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHTTCSSCC-----HHHHHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 345555666688764 3467788999999999877765544
No 58
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=33.12 E-value=54 Score=20.42 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 46 YRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 46 yr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
.|...+.-||+...+ ..+..+.|.+.|..|++.++....+
T Consensus 16 ~r~~~~~~~p~~~~~---~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 16 CREEHKKKHPDASVN---FSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHCTTCCCC---HHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHCCCCCCc---HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 455556678986532 2367788999999999887665443
No 59
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=32.56 E-value=58 Score=20.67 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 19 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (77)
T 1hme_A 19 SEYRPKIKGEHPGLS-----IGDVAKKLGEMWNNTAADDKQPYEK 58 (77)
T ss_dssp HHHHHHHHHHCTTCC-----HHHHHHHHHHHHHHSCGGGSHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345555666788854 3467889999999999877665443
No 60
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=31.17 E-value=42 Score=21.66 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCC
Q 026559 36 GASDEQIKRAYRKLALKYHPD 56 (237)
Q Consensus 36 ~a~~~eIk~ayr~la~~~hPD 56 (237)
.++.+|.+++|++|...++-+
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~ 31 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVP 31 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHcCcC
Confidence 568999999999998887543
No 61
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=30.95 E-value=48 Score=22.12 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+
T Consensus 20 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 20 NERREQIRTRHPDLP-----FPEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp HHHHHHHHHHCTTCC-----HHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345666667788864 3467788999999999887765444
No 62
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=28.20 E-value=48 Score=21.45 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 43 KRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 43 k~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 18 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC-----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3456666777889865 3467788999999999877665444
No 63
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=27.61 E-value=1e+02 Score=21.15 Aligned_cols=33 Identities=30% Similarity=0.588 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Q 026559 40 EQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAY 75 (237)
Q Consensus 40 ~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay 75 (237)
++++..||.+.+.|-.+-..-+. +-+.| ||.|+
T Consensus 12 ~~L~~~YR~ill~YF~~d~~~n~-~Id~f--Vn~aF 44 (102)
T 1r5q_A 12 QQLKSDYRQILLSYFTTDKALKE-KIDKF--INAVF 44 (102)
T ss_dssp HHHHHHHHHHHHHTTSCC--CHH-HHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHH-HHHHH--HHHHH
Confidence 56899999999999766544333 44445 55554
No 64
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.84 E-value=39 Score=21.12 Aligned_cols=48 Identities=10% Similarity=0.328 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH---HHHHHhhcc-cc-cccccccc
Q 026559 40 EQIKRAYRKLALKYHPDKNQGNEEANKRFAEI---NNAYEVLSD-SE-TRNIYDTY 90 (237)
Q Consensus 40 ~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i---~~Ay~~L~d-~~-~r~~yD~~ 90 (237)
+|..+||.+|.+...=|..=+ =+...+.| ..-|.+|.| |. +++.|+.|
T Consensus 3 eEae~aF~~lL~~~~V~s~ws---weqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWS---FSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCC---HHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCc---HHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 577889999988765444322 22445555 347889996 54 66777765
No 65
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.02 E-value=45 Score=22.25 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+..|...+.-||+.. ..+.-+.|.+.|..|++.++....+
T Consensus 20 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 59 (92)
T 2cs1_A 20 QDHRPQFLIENPKTS-----LEDATLQIEELWKTLSEEEKLKYEE 59 (92)
T ss_dssp HHHHHHHHHHCCSSC-----HHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345556667788864 3467788999999999877665544
No 66
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=25.49 E-value=43 Score=22.29 Aligned_cols=41 Identities=10% Similarity=0.126 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+.
T Consensus 33 ~~~r~~~k~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~~ 73 (90)
T 1wgf_A 33 EEKRRQLQEERPELS-----ESELTRLLARMWNDLSEKKKAKYKAR 73 (90)
T ss_dssp HHTHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345666677789854 34677889999999998776655543
No 67
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.95 E-value=49 Score=21.72 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+..|...+.-||+.... ..+..+.|.+.|..|++.++....|
T Consensus 28 ~~~r~~~k~~~p~~~~~---~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPVN---FAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHCTTSCCC---HHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34555566678987532 2367788999999999877665444
No 68
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.22 E-value=41 Score=22.11 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhccccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT 89 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~ 89 (237)
+.+|...+.-||+.. + ..+.-+.|.+.|..|++.++....+.
T Consensus 18 ~e~R~~ik~~~P~~~-~---~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 18 EENRSNILSDNPDFS-D---EADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHCTTCC-S---HHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCc-h---hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 446777777899975 1 23678889999999998887765554
No 69
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A
Probab=24.20 E-value=75 Score=23.94 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCCCCcEEEEeeecc
Q 026559 208 GYFVTVDIEKGMQDGQVSFIKFKCD 232 (237)
Q Consensus 208 ~~~~~V~Ip~G~~~G~~i~l~g~g~ 232 (237)
..-..-.||.|++.|+.|+|+|.-.
T Consensus 28 ~vPy~~~ipggL~~G~~I~I~G~v~ 52 (164)
T 3i8t_A 28 TLPYKRPIPGGLSVGMSVYIQGMAK 52 (164)
T ss_dssp CSSEEEECTTCCCTTCEEEEEEEEC
T ss_pred CCCeeeeCCCCCCCCCEEEEEEEEC
Confidence 3446778999999999999999754
No 70
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=23.65 E-value=64 Score=21.06 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccccc
Q 026559 36 GASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTY 90 (237)
Q Consensus 36 ~a~~~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD~~ 90 (237)
+.|...+.+.|-++... +|+.. -.|++|-+.|.-.++|++||-.
T Consensus 9 ~~SL~~lt~kFi~l~~~-~~~~~----------i~l~~aa~~L~v~~kRRiYDI~ 52 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQE-AKDGV----------LDLKLAADTLAVRQKRRIYDIT 52 (76)
T ss_dssp TTCHHHHHHHHHHHHHH-SSTTE----------EEHHHHHHHTTTCCTHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHh-CCCCc----------CcHHHHHHHhCCccceehhhHH
Confidence 55777788888887654 44422 1266777777655799999954
No 71
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=23.26 E-value=50 Score=24.25 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=25.0
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHHHhCCC
Q 026559 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPD 56 (237)
Q Consensus 27 ~y~iLgv~~~a~~~eIk~ayr~la~~~hPD 56 (237)
++..|-|....+.+|++++=..+..++|||
T Consensus 34 ~l~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 34 LLKTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEEEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred hhcccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 367788888889999999888887888887
No 72
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=22.99 E-value=1.1e+02 Score=21.37 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Q 026559 40 EQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAY 75 (237)
Q Consensus 40 ~eIk~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay 75 (237)
++++..||.+.+.|--+-..-+. +-+.| ||.|+
T Consensus 19 ~~L~~~YR~ill~YF~~d~~~nq-~Id~F--Vn~aF 51 (111)
T 1v2z_A 19 DELRSIYRTIVLEYFNTDAKVNE-RIDEF--VSKAF 51 (111)
T ss_dssp HHHHHHHHHHHHHTTCTTSCHHH-HHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHhCCchHHHH-HHHHH--HHHHH
Confidence 67899999999999766544332 44444 45544
No 73
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=21.96 E-value=62 Score=20.62 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 15 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (79)
T 3u2b_C 15 QIERRKIMEQSPDMH-----NAEISKRLGKRWKLLKDSDKIPFIQ 54 (79)
T ss_dssp HHHHHHHHTTSTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345566666778764 3467788889999998776655443
No 74
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=21.92 E-value=48 Score=21.48 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+|...+.-||+... .+..+.|.+.|..|++.++....+
T Consensus 20 ~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~ 59 (82)
T 1wz6_A 20 KRHRSLVRQEHPRLDN-----RGATKILADWWAVLDPKEKQKYTD 59 (82)
T ss_dssp HHHHHHHHHHCSSSCT-----THHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCH-----HHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4456666777898653 256778999999999876655444
No 75
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=21.85 E-value=61 Score=21.33 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+
T Consensus 30 ~~~r~~~~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 69 (87)
T 2e6o_A 30 KKYRVEYTQMYPGKD-----NRAISVILGDRWKKMKNEERRMYTL 69 (87)
T ss_dssp HHTHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 445666667788854 3467788999999999777655443
No 76
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=21.79 E-value=49 Score=21.27 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 45 AYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 45 ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 16 ~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (80)
T 1gt0_D 16 GQRRKMAQENPKMH-----NSEISKRLGAEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHHHHHTTSTTSC-----HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34555566678754 3467788899999999776665444
No 77
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=21.77 E-value=61 Score=22.32 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 43 KRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 43 k~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 41 ~~~~r~~~k~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 81 (106)
T 4euw_A 41 AQAARRKLADQYPHLH-----NAELSKTLGKLWRLLNESEKRPFVE 81 (106)
T ss_dssp HHHHHHHHHHHCTTSC-----HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556777777889865 3467888999999999877665444
No 78
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=21.61 E-value=60 Score=21.22 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 17 ~~~r~~~~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (85)
T 1j46_A 17 RDQRRKMALENPRMR-----NSEISKQLGYQWKMLTEAEKWPFFQ 56 (85)
T ss_dssp HHHHHHHHHHSTTSC-----HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 345555666788764 3467788999999999776655444
No 79
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=21.07 E-value=50 Score=20.94 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+|...+.-||+... .+..+.|.+.|..|++.++....+
T Consensus 17 ~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 17 RDQRRKMALENPRMRN-----SEISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHCSCCSS-----SHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCH-----HHHHHHHHhHHHhCCHHHHHHHHH
Confidence 3456666667898653 246678999999999776655443
No 80
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=21.05 E-value=63 Score=21.10 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 45 AYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 45 ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 16 ~~r~~~~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (86)
T 2lef_A 16 EMRANVVAESTLKE-----SAAINQILGRRWHALSREEQAKYYE 54 (86)
T ss_dssp HHHHHHHHHSSCCC-----HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 45555666788864 3467788999999999776655444
No 81
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.65 E-value=91 Score=23.40 Aligned_cols=25 Identities=12% Similarity=-0.069 Sum_probs=21.1
Q ss_pred EEEEEEecCCCCCCcEEEEeeeccc
Q 026559 209 YFVTVDIEKGMQDGQVSFIKFKCDW 233 (237)
Q Consensus 209 ~~~~V~Ip~G~~~G~~i~l~g~g~~ 233 (237)
.-....||.|+..|+.|+|+|.-..
T Consensus 27 vPf~~~ip~gL~~G~~i~I~G~v~~ 51 (164)
T 1x50_A 27 VPYFGRLQGGLTARRTIIIKGYVPP 51 (164)
T ss_dssp SSEEEECSSCSCTTEEEEEEEECCT
T ss_pred CCEEeeCCCCCccCCEEEEEEEECC
Confidence 4578899999999999999997643
No 82
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=20.51 E-value=86 Score=22.67 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhccccccccccccc
Q 026559 66 KRFAEINNAYEVLSDSETRNIYDTYG 91 (237)
Q Consensus 66 ~~f~~i~~Ay~~L~d~~~r~~yD~~G 91 (237)
+.|..|.+-|- .||.-+..||++|
T Consensus 100 e~~~~L~~mYv--~D~rF~~~~d~~~ 123 (143)
T 1ny9_A 100 EMHTCLGEMYV--SDERFTRNIDAAK 123 (143)
T ss_dssp HHHHHHHHHTT--STHHHHHHHGGGS
T ss_pred HHHHHHHHHHh--cCHHHHHhHcccC
Confidence 35555555543 6787888888875
No 83
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=20.49 E-value=73 Score=19.67 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=19.0
Q ss_pred eeEEEEEEecC------CCCCCcEEEEeeecc
Q 026559 207 EGYFVTVDIEK------GMQDGQVSFIKFKCD 232 (237)
Q Consensus 207 ~~~~~~V~Ip~------G~~~G~~i~l~g~g~ 232 (237)
-...-.|.||+ |++.|+.|.+.-+++
T Consensus 18 v~~kGqItIPkeiR~~Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 18 VDELGRVVIPIELRRTLGIAEKDALEIYVDDE 49 (59)
T ss_dssp CCTTCEEECCHHHHHHTTCCTTCEEEEEEETT
T ss_pred ECCCCEEEeCHHHHHHcCCCCCCEEEEEEECC
Confidence 34445677776 888899988877765
No 84
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=20.45 E-value=2.6e+02 Score=21.07 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHHH-----------HHHhCCCCCCC-----------------------cHHHHHHHHHHHHHHH
Q 026559 33 VPRGASDEQIKRAYRKL-----------ALKYHPDKNQG-----------------------NEEANKRFAEINNAYE 76 (237)
Q Consensus 33 v~~~a~~~eIk~ayr~l-----------a~~~hPD~~~~-----------------------~~~a~~~f~~i~~Ay~ 76 (237)
-.|-+|.+++..+.... ++..|||-... +++..+.|.++|.+|+
T Consensus 35 ~rPf~s~~~L~~a~~~~~~~~~~~~~~~~l~aHP~lg~~~~~~~~lt~~S~~EQa~agl~~~~~~~~~~l~~lN~~Y~ 112 (174)
T 2o70_A 35 YRPFKDLADIEARISEFIHSLPDSGKEGILRCHPDLAGRDLQSGTLTPESQEEQSQAGMTTLDSAEIVHMYRLNSEYK 112 (174)
T ss_dssp GCSCSSHHHHHHHHHHHHHHSCHHHHHHHHHTSCCTTSHHHHHTCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHhCCccccccccccccchhhHHHHHhhccccCCHHHHHHHHHHHHHHH
Confidence 34567777777666433 56679987521 1123366888888887
No 85
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.41 E-value=64 Score=22.00 Aligned_cols=40 Identities=8% Similarity=0.101 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....|
T Consensus 30 ~~~r~~i~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 69 (102)
T 2co9_A 30 RDTQAAIKGQNPNAT-----FGEVSKIVASMWDGLGEEQKQVYKK 69 (102)
T ss_dssp HHHHHHHHHHCTTSC-----HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHH
Confidence 345555666788864 3467778889999998776665544
No 86
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=20.23 E-value=79 Score=21.42 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHhhcccccccccc
Q 026559 44 RAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD 88 (237)
Q Consensus 44 ~ayr~la~~~hPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yD 88 (237)
+..|...+.-||+.. ..+.-+.|.+.|..|++.++....+
T Consensus 23 ~~~r~~ik~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 62 (99)
T 1k99_A 23 MEKRAKYAKLHPEMS-----NLDLTKILSKKYKELPEKKKMKYIQ 62 (99)
T ss_dssp HHHHHHHHTTCTTSC-----SHHHHHHHHHHHHHSCSTTHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344555566688864 2367788999999999887766554
Done!