Query 026563
Match_columns 237
No_of_seqs 297 out of 1873
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 99.7 1.2E-17 2.5E-22 150.5 4.7 214 18-232 11-270 (344)
2 KOG0317 Predicted E3 ubiquitin 99.5 2E-14 4.2E-19 124.9 2.2 167 9-183 111-284 (293)
3 PLN03208 E3 ubiquitin-protein 99.3 2.1E-12 4.6E-17 107.3 3.6 58 131-188 11-84 (193)
4 PHA02929 N1R/p28-like protein; 99.3 2.6E-12 5.6E-17 110.8 3.3 56 136-191 172-235 (238)
5 PF13639 zf-RING_2: Ring finge 99.2 1.8E-12 3.9E-17 83.4 1.0 41 139-179 1-44 (44)
6 PF13920 zf-C3HC4_3: Zinc fing 99.2 5.5E-12 1.2E-16 83.3 2.0 47 138-184 2-49 (50)
7 PF15227 zf-C3HC4_4: zinc fing 99.2 7.4E-12 1.6E-16 79.8 2.2 38 141-178 1-42 (42)
8 PHA02926 zinc finger-like prot 99.2 1.5E-11 3.3E-16 103.7 2.8 56 136-191 168-238 (242)
9 PF13923 zf-C3HC4_2: Zinc fing 99.1 2.1E-11 4.6E-16 76.4 1.8 38 141-178 1-39 (39)
10 KOG0823 Predicted E3 ubiquitin 99.1 4.3E-11 9.4E-16 101.4 2.7 52 136-187 45-99 (230)
11 TIGR00599 rad18 DNA repair pro 99.1 8.8E-11 1.9E-15 108.0 4.2 74 134-210 22-95 (397)
12 smart00504 Ubox Modified RING 99.1 9.5E-11 2.1E-15 80.5 3.2 47 138-184 1-47 (63)
13 PF12678 zf-rbx1: RING-H2 zinc 99.0 1.8E-10 3.8E-15 82.2 2.4 42 138-179 19-73 (73)
14 COG5243 HRD1 HRD ubiquitin lig 99.0 5.5E-10 1.2E-14 100.2 5.5 49 135-183 284-345 (491)
15 KOG0320 Predicted E3 ubiquitin 99.0 2.2E-10 4.8E-15 93.5 2.6 49 137-185 130-180 (187)
16 KOG0287 Postreplication repair 98.9 2.5E-10 5.4E-15 101.3 1.7 74 137-213 22-95 (442)
17 PF00097 zf-C3HC4: Zinc finger 98.9 3.8E-10 8.2E-15 71.2 2.0 38 141-178 1-41 (41)
18 cd00162 RING RING-finger (Real 98.9 9.4E-10 2E-14 69.4 2.7 43 140-182 1-45 (45)
19 COG5432 RAD18 RING-finger-cont 98.9 1.1E-09 2.3E-14 95.6 3.3 84 137-223 24-107 (391)
20 PF14634 zf-RING_5: zinc-RING 98.8 2.1E-09 4.6E-14 69.0 2.7 41 140-180 1-44 (44)
21 KOG4628 Predicted E3 ubiquitin 98.8 5.9E-09 1.3E-13 94.1 4.8 46 139-184 230-279 (348)
22 smart00184 RING Ring finger. E 98.8 4.5E-09 9.8E-14 64.0 2.5 38 141-178 1-39 (39)
23 PF12861 zf-Apc11: Anaphase-pr 98.7 6.2E-09 1.3E-13 75.7 3.2 48 136-183 19-82 (85)
24 KOG2164 Predicted E3 ubiquitin 98.7 6.5E-09 1.4E-13 96.9 2.7 49 138-186 186-239 (513)
25 COG5540 RING-finger-containing 98.7 8.3E-09 1.8E-13 90.6 2.9 47 137-183 322-372 (374)
26 PF04564 U-box: U-box domain; 98.7 7E-09 1.5E-13 73.8 2.0 49 137-185 3-52 (73)
27 COG5574 PEX10 RING-finger-cont 98.7 1.3E-08 2.8E-13 87.9 3.0 48 136-183 213-262 (271)
28 PF13445 zf-RING_UBOX: RING-ty 98.6 1.2E-08 2.7E-13 65.2 1.3 35 141-176 1-43 (43)
29 KOG0802 E3 ubiquitin ligase [P 98.5 3.7E-08 8.1E-13 94.8 2.2 47 136-182 289-340 (543)
30 KOG4172 Predicted E3 ubiquitin 98.5 3E-08 6.4E-13 65.7 0.4 47 138-184 7-55 (62)
31 KOG2177 Predicted E3 ubiquitin 98.4 6.6E-08 1.4E-12 83.6 1.6 46 135-180 10-55 (386)
32 PF14835 zf-RING_6: zf-RING of 98.3 9.3E-08 2E-12 65.7 -0.0 46 137-184 6-52 (65)
33 KOG0978 E3 ubiquitin ligase in 98.3 1.6E-07 3.4E-12 91.4 1.0 47 138-184 643-690 (698)
34 TIGR00570 cdk7 CDK-activating 98.3 1.1E-06 2.3E-11 78.5 5.5 51 138-188 3-59 (309)
35 KOG1002 Nucleotide excision re 98.3 2E-07 4.2E-12 87.3 0.7 103 68-184 480-587 (791)
36 KOG4265 Predicted E3 ubiquitin 98.1 2.5E-06 5.5E-11 76.8 2.9 49 136-184 288-337 (349)
37 KOG4159 Predicted E3 ubiquitin 98.0 2.1E-06 4.6E-11 79.3 2.4 51 134-184 80-130 (398)
38 KOG1785 Tyrosine kinase negati 98.0 2.1E-06 4.5E-11 78.2 1.4 50 138-187 369-420 (563)
39 KOG2660 Locus-specific chromos 98.0 2.7E-06 5.8E-11 75.8 1.9 92 134-225 11-107 (331)
40 KOG0828 Predicted E3 ubiquitin 97.9 3.7E-06 8E-11 78.3 2.0 48 136-183 569-634 (636)
41 KOG0824 Predicted E3 ubiquitin 97.8 7.1E-06 1.5E-10 72.3 1.9 47 137-183 6-53 (324)
42 KOG1493 Anaphase-promoting com 97.8 3.4E-06 7.4E-11 59.7 -0.2 46 138-183 20-81 (84)
43 COG5194 APC11 Component of SCF 97.8 9.4E-06 2E-10 58.0 1.6 30 154-183 52-81 (88)
44 PF11793 FANCL_C: FANCL C-term 97.7 6.3E-06 1.4E-10 58.2 -0.2 46 138-183 2-66 (70)
45 KOG0311 Predicted E3 ubiquitin 97.7 2.7E-06 5.9E-11 76.4 -2.7 48 136-183 41-90 (381)
46 COG5152 Uncharacterized conser 97.7 1.1E-05 2.3E-10 67.4 0.9 45 139-183 197-241 (259)
47 KOG0297 TNF receptor-associate 97.7 1.6E-05 3.4E-10 73.8 2.0 49 135-183 18-67 (391)
48 KOG1734 Predicted RING-contain 97.7 1.2E-05 2.6E-10 69.9 0.9 48 136-183 222-281 (328)
49 PHA03096 p28-like protein; Pro 97.7 8.7E-05 1.9E-09 66.0 6.1 43 139-181 179-232 (284)
50 KOG2879 Predicted E3 ubiquitin 97.6 0.0002 4.3E-09 62.6 7.8 53 131-183 232-287 (298)
51 COG5219 Uncharacterized conser 97.6 1.4E-05 3E-10 79.4 0.7 50 134-183 1465-1523(1525)
52 KOG1813 Predicted E3 ubiquitin 97.5 3.6E-05 7.7E-10 67.8 1.8 46 138-183 241-286 (313)
53 KOG0804 Cytoplasmic Zn-finger 97.5 3.8E-05 8.2E-10 71.0 1.9 49 133-183 170-222 (493)
54 PF11789 zf-Nse: Zinc-finger o 97.5 6E-05 1.3E-09 51.1 2.1 42 136-177 9-53 (57)
55 smart00744 RINGv The RING-vari 97.4 0.0001 2.2E-09 48.4 2.2 40 140-179 1-49 (49)
56 KOG4692 Predicted E3 ubiquitin 97.4 0.00015 3.2E-09 65.4 3.5 50 135-184 419-468 (489)
57 KOG0827 Predicted E3 ubiquitin 97.3 0.00013 2.8E-09 66.4 2.0 41 139-179 5-52 (465)
58 KOG1814 Predicted E3 ubiquitin 97.2 0.00038 8.3E-09 63.9 4.6 44 138-181 184-238 (445)
59 KOG0825 PHD Zn-finger protein 97.1 9E-05 2E-09 72.6 -0.4 52 138-189 123-177 (1134)
60 KOG1001 Helicase-like transcri 97.0 0.00029 6.3E-09 69.5 2.0 47 139-186 455-503 (674)
61 KOG4275 Predicted E3 ubiquitin 97.0 0.00014 3.1E-09 64.0 -0.2 43 138-184 300-343 (350)
62 KOG2930 SCF ubiquitin ligase, 97.0 0.0003 6.6E-09 52.7 1.2 29 154-182 79-107 (114)
63 KOG1645 RING-finger-containing 96.9 0.0005 1.1E-08 63.1 2.3 46 138-183 4-56 (463)
64 KOG4739 Uncharacterized protei 96.8 0.00067 1.5E-08 58.3 2.0 50 139-190 4-55 (233)
65 KOG2114 Vacuolar assembly/sort 96.6 0.00069 1.5E-08 67.1 1.0 67 112-181 810-881 (933)
66 PF14447 Prok-RING_4: Prokaryo 96.6 0.0012 2.6E-08 44.1 1.8 46 137-184 6-51 (55)
67 KOG1571 Predicted E3 ubiquitin 96.4 0.0032 7E-08 57.0 3.9 46 136-184 303-348 (355)
68 COG5236 Uncharacterized conser 96.4 0.0026 5.5E-08 57.5 3.0 51 134-184 57-109 (493)
69 KOG4185 Predicted E3 ubiquitin 96.3 0.0022 4.8E-08 57.0 2.3 45 138-182 3-54 (296)
70 COG5222 Uncharacterized conser 96.0 0.0032 6.8E-08 55.9 1.4 42 139-180 275-318 (427)
71 PF10367 Vps39_2: Vacuolar sor 95.8 0.0083 1.8E-07 44.8 3.0 36 131-166 71-108 (109)
72 KOG1428 Inhibitor of type V ad 95.8 0.0038 8.3E-08 65.1 1.2 55 136-190 3484-3551(3738)
73 KOG3039 Uncharacterized conser 95.7 0.0073 1.6E-07 52.3 2.6 51 137-187 220-274 (303)
74 KOG3002 Zn finger protein [Gen 95.7 0.0053 1.2E-07 55.0 1.7 44 136-183 46-91 (299)
75 KOG4367 Predicted Zn-finger pr 95.7 0.0055 1.2E-07 56.9 1.7 35 136-170 2-36 (699)
76 PF04641 Rtf2: Rtf2 RING-finge 95.6 0.02 4.3E-07 50.3 5.1 49 136-185 111-163 (260)
77 PF07800 DUF1644: Protein of u 95.4 0.013 2.9E-07 47.4 2.9 47 138-184 2-92 (162)
78 KOG1941 Acetylcholine receptor 95.3 0.0042 9E-08 57.0 -0.3 45 136-180 363-413 (518)
79 KOG4445 Uncharacterized conser 95.2 0.0091 2E-07 53.0 1.6 47 137-183 114-186 (368)
80 KOG2034 Vacuolar sorting prote 95.2 0.013 2.9E-07 58.6 2.7 37 133-169 812-850 (911)
81 PF14570 zf-RING_4: RING/Ubox 95.0 0.018 3.8E-07 37.6 2.1 42 141-182 1-47 (48)
82 PF05290 Baculo_IE-1: Baculovi 94.6 0.022 4.8E-07 44.8 2.1 49 137-185 79-134 (140)
83 KOG3800 Predicted E3 ubiquitin 94.4 0.043 9.4E-07 48.6 3.7 49 140-188 2-56 (300)
84 PHA02825 LAP/PHD finger-like p 93.9 0.063 1.4E-06 43.6 3.5 47 136-183 6-59 (162)
85 PHA02862 5L protein; Provision 93.7 0.058 1.3E-06 43.1 2.8 44 139-183 3-53 (156)
86 PF10272 Tmpp129: Putative tra 93.6 0.11 2.3E-06 47.8 4.6 50 134-183 267-351 (358)
87 KOG0826 Predicted E3 ubiquitin 93.5 0.039 8.4E-07 49.6 1.7 45 138-182 300-345 (357)
88 PF03854 zf-P11: P-11 zinc fin 93.4 0.037 8.1E-07 35.8 1.1 37 148-184 10-47 (50)
89 KOG3268 Predicted E3 ubiquitin 93.4 0.042 9.1E-07 45.4 1.6 47 138-184 165-229 (234)
90 KOG2932 E3 ubiquitin ligase in 93.1 0.032 7E-07 49.8 0.5 46 138-185 90-136 (389)
91 KOG3970 Predicted E3 ubiquitin 92.9 0.074 1.6E-06 45.6 2.5 47 137-183 49-105 (299)
92 PF05883 Baculo_RING: Baculovi 92.7 0.046 9.9E-07 43.2 0.8 34 138-171 26-68 (134)
93 KOG0298 DEAD box-containing he 92.4 0.029 6.3E-07 58.3 -0.8 46 137-182 1152-1198(1394)
94 KOG1100 Predicted E3 ubiquitin 92.3 0.055 1.2E-06 46.1 0.9 40 140-183 160-200 (207)
95 COG5175 MOT2 Transcriptional r 91.9 0.092 2E-06 47.6 1.9 47 138-184 14-65 (480)
96 KOG1940 Zn-finger protein [Gen 91.9 0.085 1.8E-06 46.7 1.6 43 138-180 158-204 (276)
97 KOG4362 Transcriptional regula 91.8 0.041 9E-07 54.1 -0.5 48 137-184 20-70 (684)
98 PF08746 zf-RING-like: RING-li 91.7 0.15 3.3E-06 32.3 2.2 38 141-178 1-43 (43)
99 PF12906 RINGv: RING-variant d 89.8 0.17 3.7E-06 32.7 1.2 38 141-178 1-47 (47)
100 KOG1952 Transcription factor N 89.4 0.27 5.8E-06 49.4 2.7 49 137-185 190-249 (950)
101 KOG3039 Uncharacterized conser 89.2 0.27 5.9E-06 42.7 2.3 37 134-170 39-75 (303)
102 COG5220 TFB3 Cdk activating ki 87.5 0.16 3.4E-06 44.0 -0.2 47 137-183 9-64 (314)
103 KOG1815 Predicted E3 ubiquitin 86.4 0.44 9.5E-06 45.1 2.1 35 136-170 68-103 (444)
104 KOG1812 Predicted E3 ubiquitin 86.4 0.4 8.8E-06 44.6 1.8 34 137-170 145-182 (384)
105 KOG3161 Predicted E3 ubiquitin 85.6 0.28 6E-06 48.0 0.3 38 137-176 10-51 (861)
106 KOG2817 Predicted E3 ubiquitin 84.8 0.62 1.3E-05 43.1 2.2 44 138-181 334-383 (394)
107 PF02891 zf-MIZ: MIZ/SP-RING z 84.6 0.53 1.1E-05 30.8 1.2 42 139-181 3-50 (50)
108 KOG0309 Conserved WD40 repeat- 83.4 0.71 1.5E-05 46.1 2.0 26 152-177 1044-1069(1081)
109 KOG3899 Uncharacterized conser 81.0 0.76 1.6E-05 41.0 1.2 29 156-184 325-366 (381)
110 KOG2113 Predicted RNA binding 80.2 1.4 2.9E-05 39.8 2.5 57 124-182 329-386 (394)
111 KOG0825 PHD Zn-finger protein 78.5 1.6 3.5E-05 43.8 2.7 45 139-183 97-154 (1134)
112 KOG3113 Uncharacterized conser 76.6 4.2 9.1E-05 35.7 4.3 62 136-202 109-174 (293)
113 PLN02638 cellulose synthase A 76.6 3.8 8.3E-05 42.7 4.8 58 137-195 16-81 (1079)
114 KOG0827 Predicted E3 ubiquitin 75.4 0.31 6.7E-06 45.0 -3.0 46 138-183 196-245 (465)
115 PF14569 zf-UDP: Zinc-binding 74.9 2.7 5.9E-05 30.1 2.3 49 137-185 8-64 (80)
116 PF07191 zinc-ribbons_6: zinc- 71.7 0.5 1.1E-05 33.2 -2.0 42 138-184 1-42 (70)
117 KOG0269 WD40 repeat-containing 71.4 3.3 7.1E-05 41.5 2.7 43 139-181 780-826 (839)
118 KOG1812 Predicted E3 ubiquitin 71.0 1.8 4E-05 40.2 0.9 42 137-178 305-351 (384)
119 KOG3053 Uncharacterized conser 70.4 2.8 6E-05 36.8 1.8 56 136-191 18-90 (293)
120 KOG3579 Predicted E3 ubiquitin 70.2 2 4.3E-05 38.2 0.9 34 137-170 267-304 (352)
121 KOG4718 Non-SMC (structural ma 67.7 3.4 7.3E-05 35.3 1.7 45 139-183 182-227 (235)
122 COG5183 SSM4 Protein involved 66.7 4.2 9.1E-05 41.1 2.4 47 137-183 11-66 (1175)
123 PF04216 FdhE: Protein involve 66.5 1.1 2.4E-05 39.8 -1.5 44 138-181 172-220 (290)
124 KOG2231 Predicted E3 ubiquitin 64.8 5 0.00011 39.8 2.5 44 140-183 2-52 (669)
125 COG0068 HypF Hydrogenase matur 64.6 3.9 8.5E-05 40.8 1.7 46 138-183 101-184 (750)
126 COG5109 Uncharacterized conser 64.4 3.7 8E-05 37.1 1.4 44 138-181 336-385 (396)
127 PLN02189 cellulose synthase 64.4 6.4 0.00014 41.0 3.3 50 137-186 33-90 (1040)
128 TIGR01562 FdhE formate dehydro 62.9 1.9 4.2E-05 38.8 -0.6 44 138-181 184-233 (305)
129 KOG2068 MOT2 transcription fac 61.3 6 0.00013 35.9 2.2 45 139-183 250-298 (327)
130 PF06844 DUF1244: Protein of u 61.2 4.4 9.6E-05 28.1 1.0 12 159-170 11-22 (68)
131 KOG3842 Adaptor protein Pellin 61.2 7.6 0.00017 35.2 2.8 48 136-183 339-414 (429)
132 PLN02436 cellulose synthase A 60.3 8.2 0.00018 40.3 3.2 50 137-186 35-92 (1094)
133 smart00647 IBR In Between Ring 59.5 2.5 5.4E-05 28.1 -0.4 17 154-170 44-60 (64)
134 PRK03564 formate dehydrogenase 59.3 3.2 6.9E-05 37.5 0.1 44 137-180 186-234 (309)
135 KOG0824 Predicted E3 ubiquitin 58.6 3.8 8.3E-05 36.8 0.5 55 136-190 103-158 (324)
136 PF06937 EURL: EURL protein; 58.6 24 0.00051 31.3 5.3 38 139-176 31-74 (285)
137 TIGR00622 ssl1 transcription f 58.6 8.8 0.00019 29.5 2.4 41 139-179 56-110 (112)
138 KOG1829 Uncharacterized conser 58.0 4.1 8.9E-05 39.8 0.6 23 154-179 535-557 (580)
139 PLN02400 cellulose synthase 57.2 12 0.00027 39.1 3.9 57 137-194 35-99 (1085)
140 PF04710 Pellino: Pellino; In 54.5 4.1 8.9E-05 37.9 0.0 46 138-183 328-401 (416)
141 PLN02915 cellulose synthase A 54.0 13 0.00029 38.8 3.5 58 137-195 14-79 (1044)
142 PF07975 C1_4: TFIIH C1-like d 53.1 11 0.00024 24.8 1.9 26 154-179 25-50 (51)
143 PF05605 zf-Di19: Drought indu 52.7 7.7 0.00017 25.4 1.1 36 138-180 2-39 (54)
144 PF04710 Pellino: Pellino; In 52.4 4.7 0.0001 37.5 0.0 30 152-184 305-340 (416)
145 KOG4185 Predicted E3 ubiquitin 51.6 2.4 5.2E-05 37.6 -2.0 44 138-181 207-265 (296)
146 KOG2066 Vacuolar assembly/sort 50.8 4.6 0.0001 40.6 -0.3 42 136-178 782-830 (846)
147 PF14446 Prok-RING_1: Prokaryo 50.4 15 0.00033 24.5 2.2 30 138-167 5-38 (54)
148 PF01363 FYVE: FYVE zinc finge 50.3 4.2 9E-05 27.8 -0.5 32 137-168 8-43 (69)
149 smart00132 LIM Zinc-binding do 49.6 13 0.00027 21.6 1.6 34 141-182 2-37 (39)
150 PRK04023 DNA polymerase II lar 49.2 15 0.00032 38.3 2.9 44 138-183 626-674 (1121)
151 PF10146 zf-C4H2: Zinc finger- 48.5 14 0.0003 32.0 2.3 28 161-188 197-224 (230)
152 PF13240 zinc_ribbon_2: zinc-r 47.8 4.3 9.4E-05 22.1 -0.6 13 168-180 9-21 (23)
153 smart00064 FYVE Protein presen 47.8 15 0.00033 24.8 2.0 33 138-170 10-46 (68)
154 PF09723 Zn-ribbon_8: Zinc rib 47.6 5.4 0.00012 24.9 -0.3 30 154-184 9-39 (42)
155 PF06906 DUF1272: Protein of u 45.3 22 0.00047 23.9 2.3 43 140-184 7-53 (57)
156 cd00065 FYVE FYVE domain; Zinc 45.0 16 0.00034 23.7 1.7 31 139-169 3-37 (57)
157 KOG1609 Protein involved in mR 44.7 16 0.00034 32.2 2.2 47 138-184 78-135 (323)
158 KOG4451 Uncharacterized conser 42.4 18 0.00038 31.4 2.0 27 161-187 252-278 (286)
159 COG4647 AcxC Acetone carboxyla 42.0 14 0.0003 29.2 1.2 23 140-162 59-81 (165)
160 PF04423 Rad50_zn_hook: Rad50 41.1 11 0.00024 24.6 0.5 12 172-183 20-31 (54)
161 PF13901 DUF4206: Domain of un 38.9 19 0.00042 30.3 1.7 39 137-180 151-197 (202)
162 PF10571 UPF0547: Uncharacteri 38.6 8.9 0.00019 21.5 -0.3 7 154-160 18-24 (26)
163 COG3813 Uncharacterized protei 38.5 24 0.00052 25.0 1.8 26 157-184 28-53 (84)
164 PF10497 zf-4CXXC_R1: Zinc-fin 36.8 35 0.00075 25.8 2.6 26 157-182 37-71 (105)
165 PF02318 FYVE_2: FYVE-type zin 36.0 14 0.0003 28.3 0.4 45 137-181 53-103 (118)
166 KOG3799 Rab3 effector RIM1 and 35.5 8.1 0.00018 30.7 -1.0 58 133-194 60-129 (169)
167 KOG1356 Putative transcription 35.4 12 0.00025 38.1 -0.2 46 138-183 229-282 (889)
168 COG3492 Uncharacterized protei 34.5 17 0.00036 26.9 0.5 12 159-170 42-53 (104)
169 KOG2807 RNA polymerase II tran 34.4 31 0.00066 31.5 2.3 42 138-179 330-374 (378)
170 KOG0802 E3 ubiquitin ligase [P 33.8 20 0.00043 34.8 1.1 44 136-183 477-520 (543)
171 PLN02195 cellulose synthase A 33.4 44 0.00096 34.8 3.5 46 138-183 6-59 (977)
172 KOG0801 Predicted E3 ubiquitin 33.3 14 0.0003 30.4 -0.0 26 137-162 176-204 (205)
173 PF01485 IBR: IBR domain; Int 32.5 7.1 0.00015 25.7 -1.6 17 154-170 44-60 (64)
174 PF14353 CpXC: CpXC protein 29.2 33 0.00072 26.3 1.5 45 139-183 2-49 (128)
175 KOG2113 Predicted RNA binding 28.5 19 0.00041 32.7 -0.0 47 137-183 135-183 (394)
176 PRK14714 DNA polymerase II lar 27.9 36 0.00078 36.5 1.8 46 138-183 667-720 (1337)
177 PF09297 zf-NADH-PPase: NADH p 27.4 14 0.00031 21.4 -0.7 23 158-180 3-29 (32)
178 KOG1815 Predicted E3 ubiquitin 27.1 25 0.00054 33.2 0.5 45 139-183 164-237 (444)
179 smart00290 ZnF_UBP Ubiquitin C 26.9 40 0.00086 21.2 1.3 23 141-163 2-24 (50)
180 smart00834 CxxC_CXXC_SSSS Puta 25.9 24 0.00051 21.2 0.1 14 171-184 25-38 (41)
181 PF15616 TerY-C: TerY-C metal 25.8 29 0.00063 27.4 0.6 44 134-183 73-116 (131)
182 KOG2979 Protein involved in DN 24.8 38 0.00083 29.8 1.2 43 139-181 177-222 (262)
183 PRK11595 DNA utilization prote 24.4 61 0.0013 27.6 2.4 37 140-181 7-43 (227)
184 PF10083 DUF2321: Uncharacteri 24.4 19 0.0004 29.3 -0.7 24 157-183 27-50 (158)
185 PRK08351 DNA-directed RNA poly 24.3 43 0.00094 22.9 1.1 19 171-189 14-32 (61)
186 PF14311 DUF4379: Domain of un 24.1 47 0.001 21.6 1.3 9 170-178 47-55 (55)
187 PRK06393 rpoE DNA-directed RNA 23.3 43 0.00094 23.1 1.0 17 171-187 16-32 (64)
188 PF00412 LIM: LIM domain; Int 23.2 33 0.00073 22.0 0.4 35 141-183 1-37 (58)
189 KOG2789 Putative Zn-finger pro 22.4 45 0.00098 31.3 1.2 49 137-185 73-147 (482)
190 TIGR00143 hypF [NiFe] hydrogen 22.3 44 0.00096 33.7 1.3 24 160-183 120-151 (711)
191 PF04981 NMD3: NMD3 family ; 22.3 1E+02 0.0023 26.4 3.4 40 159-202 14-61 (236)
192 PLN02248 cellulose synthase-li 21.6 76 0.0016 33.7 2.8 32 155-186 149-180 (1135)
193 KOG4218 Nuclear hormone recept 21.3 29 0.00063 31.9 -0.2 13 137-149 14-26 (475)
194 PF14169 YdjO: Cold-inducible 21.1 52 0.0011 22.4 1.0 13 171-183 38-50 (59)
195 PF10764 Gin: Inhibitor of sig 20.5 59 0.0013 20.8 1.2 29 140-169 1-29 (46)
196 PRK07276 DNA polymerase III su 20.4 83 0.0018 28.1 2.5 54 174-233 59-112 (290)
197 KOG1701 Focal adhesion adaptor 20.4 15 0.00032 34.6 -2.3 36 140-183 336-371 (468)
198 KOG2462 C2H2-type Zn-finger pr 20.2 48 0.001 29.5 0.9 48 136-183 159-226 (279)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-17 Score=150.45 Aligned_cols=214 Identities=29% Similarity=0.427 Sum_probs=159.7
Q ss_pred cccCCCCCCCceEEEeeecCCc-hhHHHHHHhhhhhHHHHHhhhhhheeEEEe-cCCccccccccc--cccHHHHHhhhh
Q 026563 18 ASEYPREYDGACLQMRLSYSQA-AHTFLFLVQWIDCRLAGALGLLRILIYKAY-ADGKTTMCTRER--KASIKEFYGVIF 93 (237)
Q Consensus 18 ~~~~~~~~~g~~~qm~ls~~~~-a~~~lfl~~~~~~sia~~l~l~~il~y~v~-~dg~~~~~~~~r--~~si~efy~~I~ 93 (237)
...+|+++.+.--+||+++++. .++..+++.|+++.-+. .|..+++++..+ .++..+++...+ ...+++++++.+
T Consensus 11 c~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~s~~~~~ 89 (344)
T KOG1039|consen 11 CKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAAS-TGLSQSLIWANAVADASATMSVSSRPVLTAIRASSSISE 89 (344)
T ss_pred hhhcccccccccceeeeeccCchhhccccccccccccccc-cccchhhcccchhhccccccchhcccchhhhhhhhcccc
Confidence 5678999999999999999888 88999999999988776 777888888887 788888777665 678889998888
Q ss_pred hh---------HHHhhhcCCChHHH----------HhHHHhHHHHhhhcccc--------cCCCccccCCCCCcceeecc
Q 026563 94 PS---------LLQLQRGITDVEDK----------KQKEICDAKYKKKGRMD--------KGKLSEIDIEREEECGICLE 146 (237)
Q Consensus 94 ps---------l~qL~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~C~IC~~ 146 (237)
++ +.+.+.+....... .+...+...+...+... -++........+..|+||++
T Consensus 90 ~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~s~~k~CGICme 169 (344)
T KOG1039|consen 90 PSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQKSSEKECGICME 169 (344)
T ss_pred ccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCccccccceehhh
Confidence 87 22222222222111 01112222222222111 11122233356889999999
Q ss_pred ccCcce--------ecCCCCcccHhHHHHhhc--c-----CCCCccccccccccCCCCccccCCcchhhhhhhhhHHHHH
Q 026563 147 ICCKIV--------LPDCNHSMCMRCYRNWRA--R-----SQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLK 211 (237)
Q Consensus 147 ~~~~~v--------~~~CgH~FC~~Ci~~w~~--~-----~~~CP~CR~~~~~~~~~~~~~~~~~~ei~d~~~~~~e~l~ 211 (237)
...+.. +++|.|.||.+||+.|.. + +..||+||.+...+++...|+.+..++.....+..++...
T Consensus 170 ~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~~k~~li~e~~~~~s~ 249 (344)
T KOG1039|consen 170 TINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKEEKQKLIEEYEAEMSA 249 (344)
T ss_pred hccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeecccccccHHHHHHHhhc
Confidence 887543 489999999999999984 4 6899999999999999999999999888888888888888
Q ss_pred HHHHhhccCCCCCCCcceecc
Q 026563 212 RLFMYIDKLPFITPNPTLVSY 232 (237)
Q Consensus 212 ~l~~~i~~lp~~~p~~~~~~~ 232 (237)
+...|+++.+...|..-...|
T Consensus 250 ~~c~yf~~~~g~cPf~s~~~y 270 (344)
T KOG1039|consen 250 KDCKYFSQGLGSCPFGSKCFY 270 (344)
T ss_pred cchhhhcCCCCCCCCCCcccc
Confidence 889999999999998655554
No 2
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2e-14 Score=124.93 Aligned_cols=167 Identities=18% Similarity=0.243 Sum_probs=97.4
Q ss_pred HHHHHHhhccccCCCCCCCceEEEeeecCCchhHHHHHHhhhhhHHHHHhhhhhheeEEEecCCccccccc---cccccH
Q 026563 9 LKALEADIQASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTR---ERKASI 85 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~qm~ls~~~~a~~~lfl~~~~~~sia~~l~l~~il~y~v~~dg~~~~~~~---~r~~si 85 (237)
.|.|++++|.+...++..-..+|=+|.+--.+|..+|++.+..++|+..+.-++.+.-........+.+.. -...++
T Consensus 111 ~~~l~q~l~~~~~i~p~~~~~~l~~l~~v~~~h~~lFY~~g~~y~IskRltgI~yv~~~~~~~~~~~~~q~y~iLg~I~L 190 (293)
T KOG0317|consen 111 TKKLMQALQSSSEILPQARRNFLRGLFAVLRAHKALFYINGSFYSISKRLTGIRYVLARTLKGHEANASQPYKILGYILL 190 (293)
T ss_pred HHHHHHhhccCcccccHHHHHHhhhHHHHHHHhhheEEecCchHHHHHhhccceEEEEecccccccccccceeeechhhH
Confidence 47788888864444445555566688877788899999999999999987777776543211111110000 011122
Q ss_pred HHHHhhhhhhHHHhhhcCCChHHHH-hHHHhHHHHhhhccccc--CCCc-cccCCCCCcceeeccccCcceecCCCCccc
Q 026563 86 KEFYGVIFPSLLQLQRGITDVEDKK-QKEICDAKYKKKGRMDK--GKLS-EIDIEREEECGICLEICCKIVLPDCNHSMC 161 (237)
Q Consensus 86 ~efy~~I~psl~qL~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~C~IC~~~~~~~v~~~CgH~FC 161 (237)
.|.-..+-+++. ....+.+ ......+ .++....+ .+.. ....+....|.+|++....|..++|||.||
T Consensus 191 ~ql~~slg~r~~------~s~~q~~~s~~e~~~--e~~~~~~~~~~s~~~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFC 262 (293)
T KOG0317|consen 191 IQLLLSLGSRLY------ASFLQHKRSSTESIE--ESKLNHSKLEDSNSLSSIPEATRKCSLCLENRSNPSATPCGHIFC 262 (293)
T ss_pred HHHHHhhhhHHH------HHHHhcccccccccc--cccccccchhhccCCccCCCCCCceEEEecCCCCCCcCcCcchHH
Confidence 221111111100 0111000 0000000 00000000 1111 222345589999999999999999999999
Q ss_pred HhHHHHhhccCCCCcccccccc
Q 026563 162 MRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 162 ~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
+.||.+|......||+||..++
T Consensus 263 WsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 263 WSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred HHHHHHHHccccCCCcccccCC
Confidence 9999999999999999999887
No 3
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.28 E-value=2.1e-12 Score=107.34 Aligned_cols=58 Identities=24% Similarity=0.672 Sum_probs=47.9
Q ss_pred ccccCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc----------------cCCCCccccccccccCCC
Q 026563 131 SEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----------------RSQSCPFCRDSLRRVNSG 188 (237)
Q Consensus 131 ~~~~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----------------~~~~CP~CR~~~~~~~~~ 188 (237)
...+...+.+|+||++.+.++++++|||.||..||.+|+. ....||.||..+......
T Consensus 11 ~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv 84 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV 84 (193)
T ss_pred eeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence 3345567799999999999999999999999999999974 236899999999754433
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.26 E-value=2.6e-12 Score=110.77 Aligned_cols=56 Identities=30% Similarity=0.905 Sum_probs=47.2
Q ss_pred CCCCcceeeccccCc--------ceecCCCCcccHhHHHHhhccCCCCccccccccccCCCCcc
Q 026563 136 EREEECGICLEICCK--------IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLW 191 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~--------~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~ 191 (237)
..+.+|+||++.+.+ +++++|||.||..||.+|+..+.+||+||.++..+.....|
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence 456899999998764 36689999999999999999999999999999866655544
No 5
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.24 E-value=1.8e-12 Score=83.35 Aligned_cols=41 Identities=44% Similarity=0.996 Sum_probs=35.5
Q ss_pred CcceeeccccC---cceecCCCCcccHhHHHHhhccCCCCcccc
Q 026563 139 EECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCR 179 (237)
Q Consensus 139 ~~C~IC~~~~~---~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR 179 (237)
.+|+||++.+. .++.++|||.||.+|+.+|+.++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999985 357788999999999999999999999997
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.21 E-value=5.5e-12 Score=83.30 Aligned_cols=47 Identities=36% Similarity=0.863 Sum_probs=42.3
Q ss_pred CCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+..|.||++...++++.+|||. ||..|+.+|......||+||++++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4689999999999999999999 9999999999999999999999874
No 7
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.20 E-value=7.4e-12 Score=79.83 Aligned_cols=38 Identities=37% Similarity=0.837 Sum_probs=30.2
Q ss_pred ceeeccccCcceecCCCCcccHhHHHHhhccC----CCCccc
Q 026563 141 CGICLEICCKIVLPDCNHSMCMRCYRNWRARS----QSCPFC 178 (237)
Q Consensus 141 C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~----~~CP~C 178 (237)
|+||++.+.+|+.++|||+||..||.+|+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999988732 579987
No 8
>PHA02926 zinc finger-like protein; Provisional
Probab=99.15 E-value=1.5e-11 Score=103.66 Aligned_cols=56 Identities=36% Similarity=0.986 Sum_probs=45.7
Q ss_pred CCCCcceeeccccCc---------ceecCCCCcccHhHHHHhhcc------CCCCccccccccccCCCCcc
Q 026563 136 EREEECGICLEICCK---------IVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGDLW 191 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~---------~v~~~CgH~FC~~Ci~~w~~~------~~~CP~CR~~~~~~~~~~~~ 191 (237)
+.+.+|+||++...+ +++++|+|.||..||..|... ..+||+||..+..+.++..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 456899999997532 578899999999999999973 35699999999877776653
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.13 E-value=2.1e-11 Score=76.39 Aligned_cols=38 Identities=34% Similarity=0.951 Sum_probs=34.1
Q ss_pred ceeeccccCcc-eecCCCCcccHhHHHHhhccCCCCccc
Q 026563 141 CGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFC 178 (237)
Q Consensus 141 C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~C 178 (237)
|+||++.+.++ +.++|||.||.+|+.+|++....||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 679999999999999999999999998
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.3e-11 Score=101.41 Aligned_cols=52 Identities=27% Similarity=0.701 Sum_probs=46.1
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHHhhc---cCCCCccccccccccCC
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLRRVNS 187 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~~~~~~~ 187 (237)
....+|.||++.-.+||++.|||.||+-||.+|+. .++.||+|+..++....
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 45689999999999999999999999999999998 67899999998874433
No 11
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=8.8e-11 Score=108.03 Aligned_cols=74 Identities=26% Similarity=0.588 Sum_probs=56.4
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccccCCCCccccCCcchhhhhhhhhHHHH
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENL 210 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~~~~~~~ei~d~~~~~~e~l 210 (237)
.++....|+||.+.+..|++++|||.||..|+..|+.....||.||..+.......++. ..++++.....+..+
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~---L~~iVe~~~~~R~~L 95 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWL---VSEIVESFKNLRPSL 95 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchH---HHHHHHHHHHhhHHH
Confidence 34567899999999999999999999999999999998889999999987544444433 335555443333333
No 12
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.07 E-value=9.5e-11 Score=80.50 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=43.4
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+..|+||.+.+.+|+.++|||.||+.||.+|+.....||.|+.+++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 36799999999999999999999999999999988999999998853
No 13
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.00 E-value=1.8e-10 Score=82.19 Aligned_cols=42 Identities=33% Similarity=0.923 Sum_probs=35.1
Q ss_pred CCcceeeccccCc-------------ceecCCCCcccHhHHHHhhccCCCCcccc
Q 026563 138 EEECGICLEICCK-------------IVLPDCNHSMCMRCYRNWRARSQSCPFCR 179 (237)
Q Consensus 138 ~~~C~IC~~~~~~-------------~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR 179 (237)
+..|+||++.+.+ .+..+|||.||..||.+|+..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3459999999842 25568999999999999999999999998
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.5e-10 Score=100.23 Aligned_cols=49 Identities=29% Similarity=0.793 Sum_probs=42.3
Q ss_pred CCCCCcceeeccccC-------------cceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 135 IEREEECGICLEICC-------------KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~-------------~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.+.+..|.||++.+. .|..++|||.+|.+|++.|.+++++||+||.++-
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 356789999999843 2477899999999999999999999999999953
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.2e-10 Score=93.46 Aligned_cols=49 Identities=27% Similarity=0.719 Sum_probs=42.8
Q ss_pred CCCcceeeccccCc--ceecCCCCcccHhHHHHhhccCCCCcccccccccc
Q 026563 137 REEECGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 185 (237)
Q Consensus 137 ~~~~C~IC~~~~~~--~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~ 185 (237)
....|+|||+.+.+ ++-++|||.||..||...+.....||+||+.++..
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 34789999999986 45699999999999999999999999999977644
No 16
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.94 E-value=2.5e-10 Score=101.32 Aligned_cols=74 Identities=26% Similarity=0.572 Sum_probs=59.4
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccccCCCCccccCCcchhhhhhhhhHHHHHHH
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRL 213 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~~~~~~~ei~d~~~~~~e~l~~l 213 (237)
.-+.|.||.++|..|++++|||.||.-||+.++..+..||.|+.++..-..+.+.+ .+|++.-.+..+..|..+
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~i---l~Eiv~S~~~~R~~Ll~f 95 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRI---LDEIVKSLNFARNHLLQF 95 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhH---HHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999998665555543 346666655555554443
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.94 E-value=3.8e-10 Score=71.16 Aligned_cols=38 Identities=47% Similarity=1.065 Sum_probs=35.6
Q ss_pred ceeeccccCcce-ecCCCCcccHhHHHHhhc--cCCCCccc
Q 026563 141 CGICLEICCKIV-LPDCNHSMCMRCYRNWRA--RSQSCPFC 178 (237)
Q Consensus 141 C~IC~~~~~~~v-~~~CgH~FC~~Ci~~w~~--~~~~CP~C 178 (237)
|+||++.+.+++ +++|||.||..|+.+|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 899999999999999988 77899988
No 18
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=9.4e-10 Score=69.44 Aligned_cols=43 Identities=37% Similarity=0.970 Sum_probs=36.5
Q ss_pred cceeeccccCccee-cCCCCcccHhHHHHhhcc-CCCCccccccc
Q 026563 140 ECGICLEICCKIVL-PDCNHSMCMRCYRNWRAR-SQSCPFCRDSL 182 (237)
Q Consensus 140 ~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~ 182 (237)
.|+||++.+.+++. ++|||.||..|+..|... ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999965544 559999999999999986 88899998753
No 19
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.88 E-value=1.1e-09 Score=95.64 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=63.8
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccccCCCCccccCCcchhhhhhhhhHHHHHHHHHh
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMY 216 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~~~~~~~ei~d~~~~~~e~l~~l~~~ 216 (237)
.-+.|-||.+.+..|+.++|||.||.-||+.++..+.-||.||.+......+.. ....++.+.....+..+......
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~---s~~~ei~es~~~~r~~l~~~L~~ 100 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGS---SGSREINESHARNRDLLRKVLES 100 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccc---hhHHHHHHhhhhccHHHHHHHhc
Confidence 447899999999999999999999999999999999999999998875444333 23345555555556666666555
Q ss_pred hccCCCC
Q 026563 217 IDKLPFI 223 (237)
Q Consensus 217 i~~lp~~ 223 (237)
...+|..
T Consensus 101 ~~~~p~p 107 (391)
T COG5432 101 LCRLPRP 107 (391)
T ss_pred ccCCCCc
Confidence 5555553
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.83 E-value=2.1e-09 Score=69.05 Aligned_cols=41 Identities=34% Similarity=0.985 Sum_probs=36.4
Q ss_pred cceeeccccC---cceecCCCCcccHhHHHHhhccCCCCccccc
Q 026563 140 ECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 180 (237)
Q Consensus 140 ~C~IC~~~~~---~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~ 180 (237)
.|+||.+.+. .+.+++|||.||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999983 4688999999999999999877899999984
No 21
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=5.9e-09 Score=94.06 Aligned_cols=46 Identities=30% Similarity=0.803 Sum_probs=39.8
Q ss_pred CcceeeccccCcc---eecCCCCcccHhHHHHhhccC-CCCccccccccc
Q 026563 139 EECGICLEICCKI---VLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRR 184 (237)
Q Consensus 139 ~~C~IC~~~~~~~---v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~~~~ 184 (237)
..|+||+|.+.+. ..+||+|.||..||.+|+... ..||+|+..+.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4999999999863 668999999999999999965 569999987753
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.76 E-value=4.5e-09 Score=64.00 Aligned_cols=38 Identities=39% Similarity=1.037 Sum_probs=34.9
Q ss_pred ceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCccc
Q 026563 141 CGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFC 178 (237)
Q Consensus 141 C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~C 178 (237)
|+||++....++.++|||.||..|+..|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988889999999999999999998 67789987
No 23
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.75 E-value=6.2e-09 Score=75.67 Aligned_cols=48 Identities=29% Similarity=0.807 Sum_probs=39.6
Q ss_pred CCCCcceeeccccCc-------------ceecCCCCcccHhHHHHhhcc---CCCCcccccccc
Q 026563 136 EREEECGICLEICCK-------------IVLPDCNHSMCMRCYRNWRAR---SQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~-------------~v~~~CgH~FC~~Ci~~w~~~---~~~CP~CR~~~~ 183 (237)
..+..|+||...|.. .+.-.|+|.||..||.+|+.. +..||+||++..
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 357889999988871 245679999999999999983 589999999865
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6.5e-09 Score=96.91 Aligned_cols=49 Identities=31% Similarity=0.706 Sum_probs=43.1
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhc-----cCCCCccccccccccC
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-----RSQSCPFCRDSLRRVN 186 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-----~~~~CP~CR~~~~~~~ 186 (237)
+..||||++...-|+.+.|||.||..||.+++. .-..||+||..+...+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 789999999999999999999999999998665 3579999999988533
No 25
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=8.3e-09 Score=90.59 Aligned_cols=47 Identities=30% Similarity=0.808 Sum_probs=41.6
Q ss_pred CCCcceeeccccCc---ceecCCCCcccHhHHHHhhc-cCCCCcccccccc
Q 026563 137 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~ 183 (237)
...+|+|||+.+.+ .+.+||.|.||..|+.+|+. .+..||.||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 34789999999985 36789999999999999998 7899999999875
No 26
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.69 E-value=7e-09 Score=73.84 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=40.5
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCcccccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRV 185 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~~ 185 (237)
+++.|+|+.+.+.+|+++++||.|++.||.+|+.. ...||+|+.++...
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 46889999999999999999999999999999997 99999999988743
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.3e-08 Score=87.86 Aligned_cols=48 Identities=27% Similarity=0.693 Sum_probs=43.0
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHH-hhccCCC-Ccccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRN-WRARSQS-CPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~-w~~~~~~-CP~CR~~~~ 183 (237)
..+..|.||++....+..++|||.||..||.. |-.+... ||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 56789999999999999999999999999998 9886555 999998765
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.62 E-value=1.2e-08 Score=65.18 Aligned_cols=35 Identities=29% Similarity=0.800 Sum_probs=21.9
Q ss_pred ceeeccccCc----ceecCCCCcccHhHHHHhhcc----CCCCc
Q 026563 141 CGICLEICCK----IVLPDCNHSMCMRCYRNWRAR----SQSCP 176 (237)
Q Consensus 141 C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~----~~~CP 176 (237)
|+||.+ +.+ |++++|||.||.+|+.++..+ ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 776 888899999999999999873 45666
No 29
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.7e-08 Score=94.83 Aligned_cols=47 Identities=38% Similarity=0.725 Sum_probs=42.7
Q ss_pred CCCCcceeeccccCc-----ceecCCCCcccHhHHHHhhccCCCCccccccc
Q 026563 136 EREEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~-----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~ 182 (237)
..+..|.||++.+.. +..++|||.||..|+..|+++..+||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 447899999999987 78899999999999999999999999999943
No 30
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3e-08 Score=65.67 Aligned_cols=47 Identities=36% Similarity=0.785 Sum_probs=41.3
Q ss_pred CCcceeeccccCcceecCCCCc-ccHhHHHH-hhccCCCCccccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHS-MCMRCYRN-WRARSQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~-w~~~~~~CP~CR~~~~~ 184 (237)
..+|.||+|...+.++.-|||. +|..|-.+ |...+..||+||.+++.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 3789999999999999999996 99999877 55588999999999874
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6.6e-08 Score=83.56 Aligned_cols=46 Identities=37% Similarity=0.789 Sum_probs=41.7
Q ss_pred CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccc
Q 026563 135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 180 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~ 180 (237)
...+..|+||++.+.+|.+++|||.||..|+..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3567899999999999999999999999999998777789999994
No 32
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.34 E-value=9.3e-08 Score=65.71 Aligned_cols=46 Identities=30% Similarity=0.734 Sum_probs=25.8
Q ss_pred CCCcceeeccccCcce-ecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 137 REEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v-~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+-..|++|.+.+.+|+ +..|.|.||..|+.+-+. ..||+|+.+-..
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~ 52 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI 52 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence 4578999999999996 589999999999988654 459999988653
No 33
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.6e-07 Score=91.42 Aligned_cols=47 Identities=23% Similarity=0.653 Sum_probs=42.8
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCccccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~ 184 (237)
-..|++|...+.+.+++.|||.||..|+..-.. +...||.|..+|..
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 368999999999999999999999999988766 89999999999873
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.29 E-value=1.1e-06 Score=78.45 Aligned_cols=51 Identities=27% Similarity=0.559 Sum_probs=38.4
Q ss_pred CCcceeeccc--cCcc---eecCCCCcccHhHHHHhh-ccCCCCccccccccccCCC
Q 026563 138 EEECGICLEI--CCKI---VLPDCNHSMCMRCYRNWR-ARSQSCPFCRDSLRRVNSG 188 (237)
Q Consensus 138 ~~~C~IC~~~--~~~~---v~~~CgH~FC~~Ci~~w~-~~~~~CP~CR~~~~~~~~~ 188 (237)
+..||+|... +..- .+.+|||.||..|+...+ .....||.|+.++...+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 4679999984 3321 223799999999999954 5677999999998865544
No 35
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.28 E-value=2e-07 Score=87.34 Aligned_cols=103 Identities=20% Similarity=0.441 Sum_probs=76.8
Q ss_pred EecCCccccccccccccHHHHHhhhhhhHHHhhhcCCChHHHHhHHHhHHHHhhhcccccCCCccccCCCCCcceeeccc
Q 026563 68 AYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEI 147 (237)
Q Consensus 68 v~~dg~~~~~~~~r~~si~efy~~I~psl~qL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~ 147 (237)
.|.|.+.+..++--.+++.+.|+.||..+.++++.....+--... -.+. + ..+...+.+|.+|.+.
T Consensus 480 LY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S------~~~n-------~-~~enk~~~~C~lc~d~ 545 (791)
T KOG1002|consen 480 LYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYS------ANAN-------L-PDENKGEVECGLCHDP 545 (791)
T ss_pred HHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeeh------hhcC-------C-CccccCceeecccCCh
Confidence 355677778888788888999999999999888666554322111 0111 1 1122456799999999
Q ss_pred cCcceecCCCCcccHhHHHHhhc-----cCCCCccccccccc
Q 026563 148 CCKIVLPDCNHSMCMRCYRNWRA-----RSQSCPFCRDSLRR 184 (237)
Q Consensus 148 ~~~~v~~~CgH~FC~~Ci~~w~~-----~~~~CP~CR~~~~~ 184 (237)
-.+++..+|.|.||+-|+.++.. .+.+||.|...+.-
T Consensus 546 aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 546 AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 99999999999999999998876 46899999887763
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.5e-06 Score=76.76 Aligned_cols=49 Identities=33% Similarity=0.821 Sum_probs=44.3
Q ss_pred CCCCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+...+|-||+....+.+++||.|. .|..|.+...-.+..||+||.++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 446899999999999999999996 9999999988788999999999873
No 37
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.1e-06 Score=79.32 Aligned_cols=51 Identities=33% Similarity=0.783 Sum_probs=46.8
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
.+..+.+|.||+..+.+|+.++|||.||..|+.+-+.....||.||.++..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 346789999999999999999999999999999988899999999999874
No 38
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.00 E-value=2.1e-06 Score=78.19 Aligned_cols=50 Identities=32% Similarity=0.835 Sum_probs=43.8
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhc--cCCCCccccccccccCC
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLRRVNS 187 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~~~~~ 187 (237)
...|.||-+.-.+..+-+|||..|..|+..|.. ...+||+||..++....
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 357999999999998999999999999999986 47899999999985443
No 39
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.99 E-value=2.7e-06 Score=75.83 Aligned_cols=92 Identities=18% Similarity=0.405 Sum_probs=66.6
Q ss_pred cCCCCCcceeeccccCcce-ecCCCCcccHhHHHHhhccCCCCccccccccccCCCCcc-ccCCcchhhh--hhhhhHHH
Q 026563 134 DIEREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLW-IYTSEDDIVD--LASISREN 209 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v-~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~-~~~~~~ei~d--~~~~~~e~ 209 (237)
+......|.+|-.++.++. ++.|-|.||..||.+++..+..||.|...+....+..+. .....++++- .......+
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~erE 90 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQERE 90 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHHHHH
Confidence 4456789999999999984 478999999999999999999999999988765433221 1111223221 12245667
Q ss_pred HHHHHHhhccCC-CCCC
Q 026563 210 LKRLFMYIDKLP-FITP 225 (237)
Q Consensus 210 l~~l~~~i~~lp-~~~p 225 (237)
+++...|..+.| +++|
T Consensus 91 ~k~~rdFy~~~~~~d~~ 107 (331)
T KOG2660|consen 91 MKRRRDFYKSRPLVDVP 107 (331)
T ss_pred HHHHHHHHHhCCCcccC
Confidence 888888888888 5555
No 40
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.7e-06 Score=78.35 Aligned_cols=48 Identities=29% Similarity=0.695 Sum_probs=40.3
Q ss_pred CCCCcceeeccccCc-----------------ceecCCCCcccHhHHHHhhc-cCCCCcccccccc
Q 026563 136 EREEECGICLEICCK-----------------IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~-----------------~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~ 183 (237)
+....|+|||..+.- -+++||.|.||..|+.+|.. .+-.||.||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 456789999987651 24579999999999999999 6669999999886
No 41
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=7.1e-06 Score=72.31 Aligned_cols=47 Identities=26% Similarity=0.571 Sum_probs=40.8
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCcccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~ 183 (237)
...+|+||+....-|+.+.|+|.||.-||..-.. ...+|++||.++.
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 3468999999999999999999999999987554 4566999999987
No 42
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=3.4e-06 Score=59.70 Aligned_cols=46 Identities=30% Similarity=0.723 Sum_probs=36.8
Q ss_pred CCcceeeccccCc------------c-eecCCCCcccHhHHHHhhc---cCCCCcccccccc
Q 026563 138 EEECGICLEICCK------------I-VLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~------------~-v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~~~ 183 (237)
++.|+||.-.|.- | +.--|.|.||..||.+|+. +...||+||....
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3489999887762 2 3345999999999999987 5689999998765
No 43
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.80 E-value=9.4e-06 Score=57.97 Aligned_cols=30 Identities=27% Similarity=0.634 Sum_probs=27.5
Q ss_pred cCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 154 PDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 154 ~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
--|.|.||..||.+|+.....||++|+...
T Consensus 52 G~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred EecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 459999999999999999999999998765
No 44
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.73 E-value=6.3e-06 Score=58.21 Aligned_cols=46 Identities=30% Similarity=0.814 Sum_probs=23.8
Q ss_pred CCcceeeccccC-c---c--ee--cCCCCcccHhHHHHhhcc-----------CCCCcccccccc
Q 026563 138 EEECGICLEICC-K---I--VL--PDCNHSMCMRCYRNWRAR-----------SQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~-~---~--v~--~~CgH~FC~~Ci~~w~~~-----------~~~CP~CR~~~~ 183 (237)
+.+|+||+.... . + +- ..|++.||..|+.+|+.. ...||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999998765 2 2 22 379999999999999871 147999999886
No 45
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.7e-06 Score=76.36 Aligned_cols=48 Identities=29% Similarity=0.679 Sum_probs=40.5
Q ss_pred CCCCcceeeccccCcc-eecCCCCcccHhHHHHhhc-cCCCCcccccccc
Q 026563 136 EREEECGICLEICCKI-VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~ 183 (237)
..+..|+||++.+... ....|+|.||..||..-+. ....||.||+.+.
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 4568999999999865 4478999999999977555 7899999999875
No 46
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.71 E-value=1.1e-05 Score=67.35 Aligned_cols=45 Identities=27% Similarity=0.584 Sum_probs=40.7
Q ss_pred CcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
+.|.||...+..|+.+.|||.||..|...-......|-+|.+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 689999999999999999999999999887778899999976643
No 47
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.70 E-value=1.6e-05 Score=73.82 Aligned_cols=49 Identities=29% Similarity=0.727 Sum_probs=45.0
Q ss_pred CCCCCcceeeccccCccee-cCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 135 IEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.+.+..|++|+..+.+|+. +.|||.||..|+..|...+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 4567899999999999999 499999999999999999999999988876
No 48
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.2e-05 Score=69.94 Aligned_cols=48 Identities=25% Similarity=0.699 Sum_probs=39.4
Q ss_pred CCCCcceeeccccCc----------ceecCCCCcccHhHHHHhhc--cCCCCcccccccc
Q 026563 136 EREEECGICLEICCK----------IVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~----------~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~ 183 (237)
.++..|.||-..+.. ...++|+|+||..||+.|-. +.++||.|+..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 356789999887652 34689999999999999976 7899999987664
No 49
>PHA03096 p28-like protein; Provisional
Probab=97.67 E-value=8.7e-05 Score=65.96 Aligned_cols=43 Identities=28% Similarity=0.542 Sum_probs=32.6
Q ss_pred CcceeeccccCc--------ceecCCCCcccHhHHHHhhc---cCCCCcccccc
Q 026563 139 EECGICLEICCK--------IVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDS 181 (237)
Q Consensus 139 ~~C~IC~~~~~~--------~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~ 181 (237)
-.|+||++.... ..+.+|.|.||..|+..|.. ...+||.||..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 579999997652 47789999999999999987 23445555443
No 50
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0002 Score=62.59 Aligned_cols=53 Identities=26% Similarity=0.552 Sum_probs=42.8
Q ss_pred ccccCCCCCcceeeccccCccee-cCCCCcccHhHHHHhhc--cCCCCcccccccc
Q 026563 131 SEIDIEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 183 (237)
Q Consensus 131 ~~~~~~~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~ 183 (237)
+....+.+.+|++|-+....|.. .+|||.||..|+..-.. .+.+||.|..+..
T Consensus 232 sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 232 SSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34445667899999999998865 55999999999987655 5689999987765
No 51
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.64 E-value=1.4e-05 Score=79.45 Aligned_cols=50 Identities=28% Similarity=0.747 Sum_probs=40.7
Q ss_pred cCCCCCcceeeccccC--cc-----eecCCCCcccHhHHHHhhc--cCCCCcccccccc
Q 026563 134 DIEREEECGICLEICC--KI-----VLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 183 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~--~~-----v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~ 183 (237)
..+...+|+||...+. +. ....|.|-||..|+-+|+. .+..||+||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4566789999998765 22 3345999999999999998 6789999998876
No 52
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=3.6e-05 Score=67.78 Aligned_cols=46 Identities=22% Similarity=0.527 Sum_probs=42.1
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.+.|.||...+..||.+.|||.||..|...-+.....|++|...+.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 3679999999999999999999999999988888999999987765
No 53
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.54 E-value=3.8e-05 Score=71.03 Aligned_cols=49 Identities=31% Similarity=0.658 Sum_probs=39.0
Q ss_pred ccCCCCCcceeeccccCcc----eecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 133 IDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 133 ~~~~~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
....+-.+|+||+|.+.+- +...|.|+||-.|+..|. ..+||+||-...
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 3344557899999998752 446799999999999995 588999997655
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.50 E-value=6e-05 Score=51.09 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=30.4
Q ss_pred CCCCcceeeccccCccee-cCCCCcccHhHHHHhhc--cCCCCcc
Q 026563 136 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA--RSQSCPF 177 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~--~~~~CP~ 177 (237)
.....|+|.+..+.+|+. ..|||.|.++.|.+|+. +...||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 345899999999999977 59999999999999994 6789998
No 55
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.40 E-value=0.0001 Score=48.40 Aligned_cols=40 Identities=20% Similarity=0.663 Sum_probs=31.4
Q ss_pred cceeecc--ccCcceecCCC-----CcccHhHHHHhhc--cCCCCcccc
Q 026563 140 ECGICLE--ICCKIVLPDCN-----HSMCMRCYRNWRA--RSQSCPFCR 179 (237)
Q Consensus 140 ~C~IC~~--~~~~~v~~~Cg-----H~FC~~Ci~~w~~--~~~~CP~CR 179 (237)
.|.||++ .-.++...||. |.+|..|+.+|+. +..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 22345667885 8899999999996 456999995
No 56
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00015 Score=65.43 Aligned_cols=50 Identities=22% Similarity=0.569 Sum_probs=45.3
Q ss_pred CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
..++..|+||..-....+..||+|.-|..||.+.+.+.+.|-+|+..+..
T Consensus 419 ~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 35678999999998889999999999999999999999999999887764
No 57
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00013 Score=66.43 Aligned_cols=41 Identities=27% Similarity=0.771 Sum_probs=31.1
Q ss_pred CcceeeccccCc----ceecCCCCcccHhHHHHhhc---cCCCCcccc
Q 026563 139 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRA---RSQSCPFCR 179 (237)
Q Consensus 139 ~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR 179 (237)
-.|.||.+.+.. ..+-.|||.||..|+..|++ .+..||.|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 479999554442 12223999999999999999 336899998
No 58
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00038 Score=63.90 Aligned_cols=44 Identities=23% Similarity=0.564 Sum_probs=34.6
Q ss_pred CCcceeeccccCc---ceecCCCCcccHhHHHHhhc--------cCCCCcccccc
Q 026563 138 EEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA--------RSQSCPFCRDS 181 (237)
Q Consensus 138 ~~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~--------~~~~CP~CR~~ 181 (237)
-..|.||++...- .+.++|+|.||+.|...+.. +...||-+...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 4789999997653 47799999999999999876 34577776543
No 59
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.13 E-value=9e-05 Score=72.59 Aligned_cols=52 Identities=27% Similarity=0.629 Sum_probs=41.8
Q ss_pred CCcceeeccccCcc---eecCCCCcccHhHHHHhhccCCCCccccccccccCCCC
Q 026563 138 EEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGD 189 (237)
Q Consensus 138 ~~~C~IC~~~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~ 189 (237)
...|++|+..+.+. ....|+|.||..|+..|-....+||+||..+.++...+
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeec
Confidence 46788888776643 33579999999999999999999999999988655443
No 60
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.03 E-value=0.00029 Score=69.50 Aligned_cols=47 Identities=26% Similarity=0.786 Sum_probs=39.8
Q ss_pred CcceeeccccCcceecCCCCcccHhHHHHhhc--cCCCCccccccccccC
Q 026563 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLRRVN 186 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~~~~ 186 (237)
..|.+|++ ...++.+.|||.||..|+...+. ....||.||..+....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 79999999 77788899999999999988766 3457999999887443
No 61
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00014 Score=63.96 Aligned_cols=43 Identities=30% Similarity=0.855 Sum_probs=37.1
Q ss_pred CCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
...|.||++...+-+.++|||. -|.+|-.+ ...||+||.-+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence 6789999999999999999996 79999655 3599999987764
No 62
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0003 Score=52.74 Aligned_cols=29 Identities=24% Similarity=0.694 Sum_probs=26.1
Q ss_pred cCCCCcccHhHHHHhhccCCCCccccccc
Q 026563 154 PDCNHSMCMRCYRNWRARSQSCPFCRDSL 182 (237)
Q Consensus 154 ~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~ 182 (237)
-.|.|.||..||.+|++....||+|.+.-
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 45999999999999999999999997653
No 63
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0005 Score=63.07 Aligned_cols=46 Identities=28% Similarity=0.743 Sum_probs=38.3
Q ss_pred CCcceeeccccCc-----ceecCCCCcccHhHHHHhhc--cCCCCcccccccc
Q 026563 138 EEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~-----~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~ 183 (237)
...|+||++.+.- .+.+.|||.|-..||++|+. ....||.|...-.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 4789999998874 36789999999999999997 3579999966544
No 64
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00067 Score=58.34 Aligned_cols=50 Identities=24% Similarity=0.707 Sum_probs=35.3
Q ss_pred CcceeeccccC-c-ceecCCCCcccHhHHHHhhccCCCCccccccccccCCCCc
Q 026563 139 EECGICLEICC-K-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDL 190 (237)
Q Consensus 139 ~~C~IC~~~~~-~-~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~ 190 (237)
..|..|.-.-. + -.++.|+|+||..|...-. ...||+|+.++..+.....
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC--ccccccccceeeeeecccc
Confidence 35777765444 2 3678999999999965532 2399999999876555544
No 65
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.00069 Score=67.11 Aligned_cols=67 Identities=22% Similarity=0.377 Sum_probs=47.9
Q ss_pred HHHhHHHHhhhcccccCCCccccCC----CCCcceeeccccCcc-eecCCCCcccHhHHHHhhccCCCCcccccc
Q 026563 112 KEICDAKYKKKGRMDKGKLSEIDIE----REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDS 181 (237)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~ 181 (237)
.+..++.+.+..++.+.++.....+ ....|..|-..+.-| |...|||+||++|.. .+...||.|+..
T Consensus 810 d~~~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 810 DEDAIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 3445566666665554444332222 236899999999876 558899999999988 578999999873
No 66
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.62 E-value=0.0012 Score=44.10 Aligned_cols=46 Identities=28% Similarity=0.677 Sum_probs=37.3
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
.+..|-.|...-...++++|||..|..|..-+ +-+.||+|..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 34678888887778889999999999996554 56899999988764
No 67
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0032 Score=57.04 Aligned_cols=46 Identities=28% Similarity=0.695 Sum_probs=35.1
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
.....|.||.+...+.+..+|||.-| |..-.. ...+||+||..+..
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHHH
Confidence 34578999999999999999999855 544322 34569999998763
No 68
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.38 E-value=0.0026 Score=57.50 Aligned_cols=51 Identities=27% Similarity=0.602 Sum_probs=42.7
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc--cCCCCccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLRR 184 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~~ 184 (237)
..+++..|.||.+.+.-..++||+|..|--|..+... ..+.||+||.....
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 3456678999999998888899999999999977544 88999999987653
No 69
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0022 Score=57.03 Aligned_cols=45 Identities=31% Similarity=0.728 Sum_probs=38.2
Q ss_pred CCcceeeccccCc------ceecCCCCcccHhHHHHhhc-cCCCCccccccc
Q 026563 138 EEECGICLEICCK------IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSL 182 (237)
Q Consensus 138 ~~~C~IC~~~~~~------~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~ 182 (237)
...|.||-+.+.. |..+.|||.+|..|+..... ....||+||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 3679999998873 67778999999999999877 567899999985
No 70
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.96 E-value=0.0032 Score=55.88 Aligned_cols=42 Identities=21% Similarity=0.558 Sum_probs=36.2
Q ss_pred CcceeeccccCcceec-CCCCcccHhHHHHh-hccCCCCccccc
Q 026563 139 EECGICLEICCKIVLP-DCNHSMCMRCYRNW-RARSQSCPFCRD 180 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w-~~~~~~CP~CR~ 180 (237)
+.|+.|...+..++.+ -|||.||.+||..- +.....||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 8899999999988776 68999999999874 457899999944
No 71
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.80 E-value=0.0083 Score=44.84 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=29.0
Q ss_pred ccccCCCCCcceeeccccCcc--eecCCCCcccHhHHH
Q 026563 131 SEIDIEREEECGICLEICCKI--VLPDCNHSMCMRCYR 166 (237)
Q Consensus 131 ~~~~~~~~~~C~IC~~~~~~~--v~~~CgH~FC~~Ci~ 166 (237)
....+..+..|++|...+... +..||||.||..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 345566788899999988753 558999999999975
No 72
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.77 E-value=0.0038 Score=65.09 Aligned_cols=55 Identities=25% Similarity=0.639 Sum_probs=41.6
Q ss_pred CCCCcceeeccccC---cceecCCCCcccHhHHHHhhc----------cCCCCccccccccccCCCCc
Q 026563 136 EREEECGICLEICC---KIVLPDCNHSMCMRCYRNWRA----------RSQSCPFCRDSLRRVNSGDL 190 (237)
Q Consensus 136 ~~~~~C~IC~~~~~---~~v~~~CgH~FC~~Ci~~w~~----------~~~~CP~CR~~~~~~~~~~~ 190 (237)
..+..|-||+..-- ..+.+.|+|.||..|.++.++ +-.+||+|..++++....|+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDL 3551 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDL 3551 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHH
Confidence 34577889986432 347799999999999976544 23699999999987766665
No 73
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.0073 Score=52.26 Aligned_cols=51 Identities=14% Similarity=0.250 Sum_probs=44.3
Q ss_pred CCCcceeeccccCc----ceecCCCCcccHhHHHHhhccCCCCccccccccccCC
Q 026563 137 REEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 187 (237)
Q Consensus 137 ~~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~ 187 (237)
....|++|.+.+.. .++-+|||.||.+|.++.+.....||+|-.+++..+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 45689999999885 3778999999999999999999999999999885544
No 74
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.69 E-value=0.0053 Score=55.02 Aligned_cols=44 Identities=25% Similarity=0.657 Sum_probs=37.0
Q ss_pred CCCCcceeeccccCcceecCC--CCcccHhHHHHhhccCCCCcccccccc
Q 026563 136 EREEECGICLEICCKIVLPDC--NHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~C--gH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.+-++||||.+.+..|+.. | ||.-|..|-.+ ....||.||.+++
T Consensus 46 ~~lleCPvC~~~l~~Pi~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccccee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence 3457999999999988653 6 79999999754 5789999999987
No 75
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.65 E-value=0.0055 Score=56.92 Aligned_cols=35 Identities=29% Similarity=0.686 Sum_probs=31.7
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHHhhc
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA 170 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~ 170 (237)
++++.|+||...+.+|++++|||..|+.|....+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 46789999999999999999999999999987654
No 76
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.61 E-value=0.02 Score=50.32 Aligned_cols=49 Identities=16% Similarity=0.404 Sum_probs=40.2
Q ss_pred CCCCcceeeccccCc----ceecCCCCcccHhHHHHhhccCCCCcccccccccc
Q 026563 136 EREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 185 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~ 185 (237)
.....|||....+.. ..+-+|||+|+..++.+.. ....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 456889999988863 3557999999999999984 467899999999844
No 77
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.41 E-value=0.013 Score=47.44 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=35.4
Q ss_pred CCcceeeccccCcceecCCC------------Cc-ccHhHHHHhhcc-------------------------------CC
Q 026563 138 EEECGICLEICCKIVLPDCN------------HS-MCMRCYRNWRAR-------------------------------SQ 173 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~Cg------------H~-FC~~Ci~~w~~~-------------------------------~~ 173 (237)
+..|+||||..-.+|++-|. .. -|.+|+.++.+. ..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 46899999999998888653 22 267899887540 24
Q ss_pred CCccccccccc
Q 026563 174 SCPFCRDSLRR 184 (237)
Q Consensus 174 ~CP~CR~~~~~ 184 (237)
.||+||..+..
T Consensus 82 ~CPLCRG~V~G 92 (162)
T PF07800_consen 82 ACPLCRGEVKG 92 (162)
T ss_pred cCccccCceec
Confidence 79999999874
No 78
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.31 E-value=0.0042 Score=56.96 Aligned_cols=45 Identities=33% Similarity=0.699 Sum_probs=36.1
Q ss_pred CCCCcceeeccccCc----ceecCCCCcccHhHHHHhhc--cCCCCccccc
Q 026563 136 EREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRA--RSQSCPFCRD 180 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~ 180 (237)
+-++.|..|-+.+-. ---+||.|+||.+|+.+++. ...+||.||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 445789999987652 13378999999999999887 4679999984
No 79
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.24 E-value=0.0091 Score=53.04 Aligned_cols=47 Identities=26% Similarity=0.707 Sum_probs=37.5
Q ss_pred CCCcceeeccccCc---ceecCCCCcccHhHHHHhhc-----------------------cCCCCcccccccc
Q 026563 137 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA-----------------------RSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~-----------------------~~~~CP~CR~~~~ 183 (237)
....|.||+--|.+ ...+.|-|.||..|+.+++. ....||+||..++
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 45689999988874 36689999999999977654 1257999999987
No 80
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.013 Score=58.59 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=29.4
Q ss_pred ccCCCCCcceeeccccC-cc-eecCCCCcccHhHHHHhh
Q 026563 133 IDIEREEECGICLEICC-KI-VLPDCNHSMCMRCYRNWR 169 (237)
Q Consensus 133 ~~~~~~~~C~IC~~~~~-~~-v~~~CgH~FC~~Ci~~w~ 169 (237)
...+....|.+|.-.+. .| ++.+|||.||.+|+.+..
T Consensus 812 ~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred EEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 44567789999998765 33 668899999999997753
No 81
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.03 E-value=0.018 Score=37.56 Aligned_cols=42 Identities=26% Similarity=0.696 Sum_probs=21.6
Q ss_pred ceeeccccCcc--ee--cCCCCcccHhHHHHhhc-cCCCCccccccc
Q 026563 141 CGICLEICCKI--VL--PDCNHSMCMRCYRNWRA-RSQSCPFCRDSL 182 (237)
Q Consensus 141 C~IC~~~~~~~--v~--~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~ 182 (237)
|++|.+.+... .. =+||+..|..|+.+... ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 67888877421 12 26899999999999886 689999999874
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.62 E-value=0.022 Score=44.83 Aligned_cols=49 Identities=31% Similarity=0.676 Sum_probs=38.4
Q ss_pred CCCcceeeccccCcceec----CCCCcccHhHHHHhhc---cCCCCcccccccccc
Q 026563 137 REEECGICLEICCKIVLP----DCNHSMCMRCYRNWRA---RSQSCPFCRDSLRRV 185 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~----~CgH~FC~~Ci~~w~~---~~~~CP~CR~~~~~~ 185 (237)
.--+|.||.|...+...+ =||-..|..|....++ ....||.|+.+++..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 457999999987754322 2999999999988554 578999999999843
No 83
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.043 Score=48.55 Aligned_cols=49 Identities=24% Similarity=0.583 Sum_probs=36.3
Q ss_pred cceeeccccC-c----ceecCCCCcccHhHHHHhhc-cCCCCccccccccccCCC
Q 026563 140 ECGICLEICC-K----IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVNSG 188 (237)
Q Consensus 140 ~C~IC~~~~~-~----~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~~~~ 188 (237)
.|++|..... . ..+-+|||..|.+|....+. +...||-|...+...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 5888886432 1 23348999999999999877 789999998877644433
No 84
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.94 E-value=0.063 Score=43.60 Aligned_cols=47 Identities=23% Similarity=0.585 Sum_probs=35.7
Q ss_pred CCCCcceeeccccCcceecCCC--Cc---ccHhHHHHhhc--cCCCCcccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCN--HS---MCMRCYRNWRA--RSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~Cg--H~---FC~~Ci~~w~~--~~~~CP~CR~~~~ 183 (237)
..+..|-||.+.-.+ ...||. .. -|.+|+++|.. +...|++|+.+..
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 456789999987543 234555 42 49999999998 6789999988875
No 85
>PHA02862 5L protein; Provisional
Probab=93.72 E-value=0.058 Score=43.12 Aligned_cols=44 Identities=20% Similarity=0.708 Sum_probs=34.6
Q ss_pred CcceeeccccCcceecCCCC-----cccHhHHHHhhc--cCCCCcccccccc
Q 026563 139 EECGICLEICCKIVLPDCNH-----SMCMRCYRNWRA--RSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH-----~FC~~Ci~~w~~--~~~~CP~CR~~~~ 183 (237)
..|-||.+.-.+.+ -||.- .-|++|+.+|+. +...||+|+.+..
T Consensus 3 diCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 57999999866553 45653 369999999998 6789999998875
No 86
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.55 E-value=0.11 Score=47.83 Aligned_cols=50 Identities=28% Similarity=0.701 Sum_probs=33.8
Q ss_pred cCCCCCcceeeccccCccee-----------------cCCCCc-----ccHhHHHHhhc-------------cCCCCccc
Q 026563 134 DIEREEECGICLEICCKIVL-----------------PDCNHS-----MCMRCYRNWRA-------------RSQSCPFC 178 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~-----------------~~CgH~-----FC~~Ci~~w~~-------------~~~~CP~C 178 (237)
..++.+.|--|+..-.+..+ .+|... -|.+|+-+|+. ++..||.|
T Consensus 267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 33456778888875543211 234443 37899988876 35699999
Q ss_pred ccccc
Q 026563 179 RDSLR 183 (237)
Q Consensus 179 R~~~~ 183 (237)
|+.+.
T Consensus 347 Ra~FC 351 (358)
T PF10272_consen 347 RAKFC 351 (358)
T ss_pred cccce
Confidence 99987
No 87
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.039 Score=49.64 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=36.5
Q ss_pred CCcceeeccccCcc-eecCCCCcccHhHHHHhhccCCCCccccccc
Q 026563 138 EEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182 (237)
Q Consensus 138 ~~~C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~ 182 (237)
...|++|+..-..| ++.--|-.||..|+-.+....+.||+=..+.
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 46899999988776 4444699999999999999999999754443
No 88
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=93.44 E-value=0.037 Score=35.81 Aligned_cols=37 Identities=30% Similarity=0.713 Sum_probs=25.1
Q ss_pred cCcceecCCC-CcccHhHHHHhhccCCCCccccccccc
Q 026563 148 CCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 148 ~~~~v~~~Cg-H~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
|.+..+..|. |..|..|+...+..+..||+|..++..
T Consensus 10 f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 10 FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 3444456687 899999999999999999999988864
No 89
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.042 Score=45.44 Aligned_cols=47 Identities=23% Similarity=0.600 Sum_probs=35.5
Q ss_pred CCcceeeccccCcc-------eecCCCCcccHhHHHHhhcc-----------CCCCccccccccc
Q 026563 138 EEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRAR-----------SQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~-----------~~~CP~CR~~~~~ 184 (237)
...|+||..+--+. -...||..||+-|+..|+.. -..||.|..++.-
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 35688888765433 22469999999999999872 1589999998863
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.032 Score=49.82 Aligned_cols=46 Identities=26% Similarity=0.626 Sum_probs=33.4
Q ss_pred CCcceeeccccCc-ceecCCCCcccHhHHHHhhccCCCCcccccccccc
Q 026563 138 EEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 185 (237)
Q Consensus 138 ~~~C~IC~~~~~~-~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~ 185 (237)
...|.-|--.+.. ..+.+|.|.||.+|.+.- ..+.||.|-..+.++
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD--SDKICPLCDDRVQRI 136 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC--ccccCcCcccHHHHH
Confidence 4567777655543 456789999999997543 368999998776643
No 91
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.074 Score=45.57 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=38.4
Q ss_pred CCCcceeeccccCc--ceecCCCCcccHhHHHHhhc--------cCCCCcccccccc
Q 026563 137 REEECGICLEICCK--IVLPDCNHSMCMRCYRNWRA--------RSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~--~v~~~CgH~FC~~Ci~~w~~--------~~~~CP~CR~~~~ 183 (237)
..-.|..|...+.. .+.+.|-|.||..|+.+|-. ..-.||.|..++-
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 45679999988874 47788999999999999976 3468999987764
No 92
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.71 E-value=0.046 Score=43.25 Aligned_cols=34 Identities=26% Similarity=0.612 Sum_probs=26.4
Q ss_pred CCcceeeccccCc--ce-ecCCC------CcccHhHHHHhhcc
Q 026563 138 EEECGICLEICCK--IV-LPDCN------HSMCMRCYRNWRAR 171 (237)
Q Consensus 138 ~~~C~IC~~~~~~--~v-~~~Cg------H~FC~~Ci~~w~~~ 171 (237)
..+|.||++.+.+ ++ ...|| |.||.+|+.+|...
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 5799999998876 43 34565 67999999999543
No 93
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.38 E-value=0.029 Score=58.29 Aligned_cols=46 Identities=33% Similarity=0.747 Sum_probs=40.0
Q ss_pred CCCcceeeccccC-cceecCCCCcccHhHHHHhhccCCCCccccccc
Q 026563 137 REEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182 (237)
Q Consensus 137 ~~~~C~IC~~~~~-~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~ 182 (237)
....|.||.+.+. ......|||.+|..|...|...+..||.|....
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 3458999999988 567778999999999999999999999997443
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=0.055 Score=46.06 Aligned_cols=40 Identities=30% Similarity=0.725 Sum_probs=33.2
Q ss_pred cceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCcccccccc
Q 026563 140 ECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 140 ~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.|-.|.+.-....++||.|. +|..|-.. ...||+|+.+..
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 39999998888889999995 99999543 467999998765
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.92 E-value=0.092 Score=47.57 Aligned_cols=47 Identities=30% Similarity=0.658 Sum_probs=35.5
Q ss_pred CCcceeeccccCc--c--eecCCCCcccHhHHHHhhc-cCCCCccccccccc
Q 026563 138 EEECGICLEICCK--I--VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~--~--v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~ 184 (237)
+.-|+.|++.+.. - .--+||-..|+-|+..... -+..||-||.....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 3459999998763 2 2246899899999877655 57899999998764
No 96
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.87 E-value=0.085 Score=46.73 Aligned_cols=43 Identities=30% Similarity=0.703 Sum_probs=36.3
Q ss_pred CCcceeeccccC----cceecCCCCcccHhHHHHhhccCCCCccccc
Q 026563 138 EEECGICLEICC----KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 180 (237)
Q Consensus 138 ~~~C~IC~~~~~----~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~ 180 (237)
+..|+||.+.+. .+..++|||..+..|.++.....-.||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 345999999765 3567899999999999998776699999987
No 97
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.80 E-value=0.041 Score=54.08 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=39.9
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhc---cCCCCccccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~~~~ 184 (237)
...+|+||.....+++.+.|-|.||..|+-.-+. ....||+|+..+..
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 3578999999999999999999999999865433 46799999877653
No 98
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.66 E-value=0.15 Score=32.33 Aligned_cols=38 Identities=29% Similarity=0.732 Sum_probs=22.2
Q ss_pred ceeeccccCccee---cCCCCcccHhHHHHhhccCC--CCccc
Q 026563 141 CGICLEICCKIVL---PDCNHSMCMRCYRNWRARSQ--SCPFC 178 (237)
Q Consensus 141 C~IC~~~~~~~v~---~~CgH~FC~~Ci~~w~~~~~--~CP~C 178 (237)
|.+|.+.....+. ..|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6678887776644 25888999999999888433 79987
No 99
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=89.85 E-value=0.17 Score=32.66 Aligned_cols=38 Identities=26% Similarity=0.714 Sum_probs=24.1
Q ss_pred ceeeccccCc--ceecCCCC-----cccHhHHHHhhc--cCCCCccc
Q 026563 141 CGICLEICCK--IVLPDCNH-----SMCMRCYRNWRA--RSQSCPFC 178 (237)
Q Consensus 141 C~IC~~~~~~--~v~~~CgH-----~FC~~Ci~~w~~--~~~~CP~C 178 (237)
|-||++.-.+ +.+.||+- ..|.+|+.+|+. ++.+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5677776543 45566653 469999999998 66789887
No 100
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=89.38 E-value=0.27 Score=49.39 Aligned_cols=49 Identities=29% Similarity=0.680 Sum_probs=37.2
Q ss_pred CCCcceeeccccCc--c--eecCCCCcccHhHHHHhhc-------cCCCCcccccccccc
Q 026563 137 REEECGICLEICCK--I--VLPDCNHSMCMRCYRNWRA-------RSQSCPFCRDSLRRV 185 (237)
Q Consensus 137 ~~~~C~IC~~~~~~--~--v~~~CgH~FC~~Ci~~w~~-------~~~~CP~CR~~~~~~ 185 (237)
...+|.||.+.+.. + .-.+|-|+||..||.+|-. ..-.||-|+....++
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~ 249 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTV 249 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccC
Confidence 44789999998873 2 2356889999999999976 234899998665543
No 101
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.21 E-value=0.27 Score=42.74 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=32.1
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA 170 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~ 170 (237)
.+.....|+.|+.++.+|++.+=||.||++||.+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3455678999999999999999999999999988754
No 102
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.48 E-value=0.16 Score=44.03 Aligned_cols=47 Identities=28% Similarity=0.680 Sum_probs=35.4
Q ss_pred CCCcceeeccccC-cc-----eecCCCCcccHhHHHHhhc-cCCCCc--ccccccc
Q 026563 137 REEECGICLEICC-KI-----VLPDCNHSMCMRCYRNWRA-RSQSCP--FCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~-~~-----v~~~CgH~FC~~Ci~~w~~-~~~~CP--~CR~~~~ 183 (237)
.+..||+|...-- .| +.+.|-|.+|.+|..+.+. +...|| -|.+-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 3568999987532 22 3356999999999999887 678999 7866554
No 103
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.40 E-value=0.44 Score=45.07 Aligned_cols=35 Identities=29% Similarity=0.780 Sum_probs=30.4
Q ss_pred CCCCcceeeccccCc-ceecCCCCcccHhHHHHhhc
Q 026563 136 EREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRA 170 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~-~v~~~CgH~FC~~Ci~~w~~ 170 (237)
....+|.||.+.... ...+.|||.||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 455899999999884 77789999999999999877
No 104
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.40 E-value=0.4 Score=44.55 Aligned_cols=34 Identities=32% Similarity=0.746 Sum_probs=25.6
Q ss_pred CCCcceeec-cccCc---ceecCCCCcccHhHHHHhhc
Q 026563 137 REEECGICL-EICCK---IVLPDCNHSMCMRCYRNWRA 170 (237)
Q Consensus 137 ~~~~C~IC~-~~~~~---~v~~~CgH~FC~~Ci~~w~~ 170 (237)
...+|.||. +.... .....|+|.||..|..+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 457899999 43332 13467999999999998876
No 105
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.64 E-value=0.28 Score=47.97 Aligned_cols=38 Identities=32% Similarity=0.709 Sum_probs=30.5
Q ss_pred CCCcceeeccccC----cceecCCCCcccHhHHHHhhccCCCCc
Q 026563 137 REEECGICLEICC----KIVLPDCNHSMCMRCYRNWRARSQSCP 176 (237)
Q Consensus 137 ~~~~C~IC~~~~~----~~v~~~CgH~FC~~Ci~~w~~~~~~CP 176 (237)
.-..|+||+..|. .|+.+.|||..|..|.+... +.+||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 4467999987765 57889999999999998754 46777
No 106
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.82 E-value=0.62 Score=43.08 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=34.6
Q ss_pred CCcceeeccccC---cceecCCCCcccHhHHHHhhcc---CCCCcccccc
Q 026563 138 EEECGICLEICC---KIVLPDCNHSMCMRCYRNWRAR---SQSCPFCRDS 181 (237)
Q Consensus 138 ~~~C~IC~~~~~---~~v~~~CgH~FC~~Ci~~w~~~---~~~CP~CR~~ 181 (237)
-+.|||=.+.-. .|+.+.|||+.+.+-+.+...+ +.+||.|=..
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 367998777655 4788999999999999887662 4799999443
No 107
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=84.65 E-value=0.53 Score=30.80 Aligned_cols=42 Identities=19% Similarity=0.529 Sum_probs=20.6
Q ss_pred CcceeeccccCccee-cCCCCcccHhHHHHhhc-----cCCCCcccccc
Q 026563 139 EECGICLEICCKIVL-PDCNHSMCMRCYRNWRA-----RSQSCPFCRDS 181 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~-----~~~~CP~CR~~ 181 (237)
+.|++....+..|+. ..|.|.-|-+ +..|+. ..-.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 579999998888766 6899986643 233443 34579999764
No 108
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.37 E-value=0.71 Score=46.07 Aligned_cols=26 Identities=23% Similarity=0.585 Sum_probs=23.1
Q ss_pred eecCCCCcccHhHHHHhhccCCCCcc
Q 026563 152 VLPDCNHSMCMRCYRNWRARSQSCPF 177 (237)
Q Consensus 152 v~~~CgH~FC~~Ci~~w~~~~~~CP~ 177 (237)
+...|||..|.+|..+|+.....||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 44679999999999999998889985
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.04 E-value=0.76 Score=40.99 Aligned_cols=29 Identities=28% Similarity=0.645 Sum_probs=22.3
Q ss_pred CCCcccHhHHHHhhc-------------cCCCCccccccccc
Q 026563 156 CNHSMCMRCYRNWRA-------------RSQSCPFCRDSLRR 184 (237)
Q Consensus 156 CgH~FC~~Ci~~w~~-------------~~~~CP~CR~~~~~ 184 (237)
|...-|.+|+.+|+. ++.+||.||+.+.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 344568899988865 46799999999873
No 110
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=80.23 E-value=1.4 Score=39.80 Aligned_cols=57 Identities=5% Similarity=-0.138 Sum_probs=43.3
Q ss_pred ccccCCCccccCCCCCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccc
Q 026563 124 RMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSL 182 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~ 182 (237)
.+.+.+.....+-...+|-.|-+.....+..+|||. ||.+|.. ...+.+||.|....
T Consensus 329 l~~~~~~~~~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 329 LEKREESPTNGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred chhccccccccchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 344444444555567899999998888888899996 9999977 56789999996544
No 111
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.50 E-value=1.6 Score=43.81 Aligned_cols=45 Identities=11% Similarity=0.374 Sum_probs=31.5
Q ss_pred CcceeeccccCc-------ceecCCCCcccHhHHHHhhc------cCCCCcccccccc
Q 026563 139 EECGICLEICCK-------IVLPDCNHSMCMRCYRNWRA------RSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~-------~v~~~CgH~FC~~Ci~~w~~------~~~~CP~CR~~~~ 183 (237)
..|.+|...+.. -.+-.|+|.||..||..|.. ....|++|..-+.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 445555555443 23345999999999999987 4578999976553
No 112
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.62 E-value=4.2 Score=35.66 Aligned_cols=62 Identities=16% Similarity=0.305 Sum_probs=45.1
Q ss_pred CCCCcceeeccccCc----ceecCCCCcccHhHHHHhhccCCCCccccccccccCCCCccccCCcchhhhh
Q 026563 136 EREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 202 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~~~~~~~ei~d~ 202 (237)
.....|+|---.+.. ..+-+|||.|-..-+.+. ....|+.|...+. ..+..+.+..+|.+|.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~---~~dvIvlNg~~E~~dl 174 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQ---EDDVIVLNGTEEDVDL 174 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccc---ccCeEeeCCCHHHHHH
Confidence 345789987766653 466789999999887775 4789999999886 4455566666665665
No 113
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=76.62 E-value=3.8 Score=42.70 Aligned_cols=58 Identities=26% Similarity=0.567 Sum_probs=39.9
Q ss_pred CCCcceeeccccC-----cce--ecCCCCcccHhHHHH-hhccCCCCccccccccccCCCCccccCC
Q 026563 137 REEECGICLEICC-----KIV--LPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGDLWIYTS 195 (237)
Q Consensus 137 ~~~~C~IC~~~~~-----~~v--~~~CgH~FC~~Ci~~-w~~~~~~CP~CR~~~~~~~~~~~~~~~~ 195 (237)
....|.||-+... ++. .-.||-.-|+.|++- ..+.++.||-|+...++.. ...++..+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k-gsprv~gD 81 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK-GSPAILGD 81 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCcCcc
Confidence 3458999999865 222 235777799999943 4558999999999987543 33344443
No 114
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.41 E-value=0.31 Score=44.97 Aligned_cols=46 Identities=26% Similarity=0.419 Sum_probs=39.5
Q ss_pred CCcceeeccccCc----ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
...|.||.+.+.+ ...+.|||..+..|+++|+.....||.||..+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 3579999987764 345679999999999999999999999998876
No 115
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=74.89 E-value=2.7 Score=30.12 Aligned_cols=49 Identities=24% Similarity=0.683 Sum_probs=20.6
Q ss_pred CCCcceeeccccC-----cce--ecCCCCcccHhHHHH-hhccCCCCcccccccccc
Q 026563 137 REEECGICLEICC-----KIV--LPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRV 185 (237)
Q Consensus 137 ~~~~C~IC~~~~~-----~~v--~~~CgH~FC~~Ci~~-w~~~~~~CP~CR~~~~~~ 185 (237)
....|.||-+..- ++. .-.|+-..|+.|++- ....++.||-|+...++.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 3467999988764 222 246787889999965 455899999999888754
No 116
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=71.65 E-value=0.5 Score=33.22 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=24.6
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+..||.|...+.... ||..|..|-.. ......||-|..++..
T Consensus 1 e~~CP~C~~~L~~~~----~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG----GHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEEET----TEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred CCcCCCCCCccEEeC----CEEECcccccc-ceecccCCCcccHHHH
Confidence 357999988755322 88899999776 3456899999998863
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=71.38 E-value=3.3 Score=41.45 Aligned_cols=43 Identities=16% Similarity=0.444 Sum_probs=33.8
Q ss_pred CcceeeccccCcc--eecCCCCcccHhHHHHhhccCCCCcc--cccc
Q 026563 139 EECGICLEICCKI--VLPDCNHSMCMRCYRNWRARSQSCPF--CRDS 181 (237)
Q Consensus 139 ~~C~IC~~~~~~~--v~~~CgH~FC~~Ci~~w~~~~~~CP~--CR~~ 181 (237)
..|.+|-..+... -...|||.-|.+|+..|+.....||. |-..
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHL 826 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCcc
Confidence 3688887776643 33579999999999999999999998 6443
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.02 E-value=1.8 Score=40.22 Aligned_cols=42 Identities=24% Similarity=0.627 Sum_probs=31.5
Q ss_pred CCCcceeeccccCc-----ceecCCCCcccHhHHHHhhccCCCCccc
Q 026563 137 REEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRARSQSCPFC 178 (237)
Q Consensus 137 ~~~~C~IC~~~~~~-----~v~~~CgH~FC~~Ci~~w~~~~~~CP~C 178 (237)
.-..|+.|...+.. .+.=.|||-||..|...|...+..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 34679999887653 2332399999999999999887777655
No 119
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.40 E-value=2.8 Score=36.83 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=39.4
Q ss_pred CCCCcceeeccccCcc----eecCCC-----CcccHhHHHHhhc--------cCCCCccccccccccCCCCcc
Q 026563 136 EREEECGICLEICCKI----VLPDCN-----HSMCMRCYRNWRA--------RSQSCPFCRDSLRRVNSGDLW 191 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~----v~~~Cg-----H~FC~~Ci~~w~~--------~~~~CP~CR~~~~~~~~~~~~ 191 (237)
+.|..|-||+..-++- .+-||. |--|..|+..|.. ...+||-|+.....+-+...|
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~ 90 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGP 90 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccCh
Confidence 4567899999876652 223453 5689999999987 246899999887655444443
No 120
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.24 E-value=2 Score=38.23 Aligned_cols=34 Identities=24% Similarity=0.520 Sum_probs=28.6
Q ss_pred CCCcceeeccccCcceecCC----CCcccHhHHHHhhc
Q 026563 137 REEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA 170 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~C----gH~FC~~Ci~~w~~ 170 (237)
..+.|.+|.|.+++.-...| .|-||.-|-++.++
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 34889999999998766666 69999999998877
No 121
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=67.72 E-value=3.4 Score=35.28 Aligned_cols=45 Identities=22% Similarity=0.600 Sum_probs=36.4
Q ss_pred CcceeeccccCcce-ecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~~v-~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|.+|.......+ .-+||-.++..|+..++.+...||.|..-.+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 57999999776554 3667777999999999999999999955443
No 122
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=66.66 E-value=4.2 Score=41.15 Aligned_cols=47 Identities=19% Similarity=0.572 Sum_probs=35.9
Q ss_pred CCCcceeeccccC--cceecCCCCc-----ccHhHHHHhhc--cCCCCcccccccc
Q 026563 137 REEECGICLEICC--KIVLPDCNHS-----MCMRCYRNWRA--RSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~--~~v~~~CgH~-----FC~~Ci~~w~~--~~~~CP~CR~~~~ 183 (237)
+...|.||...-. +|..-||... .|.+|+.+|.. ....|-+|..+++
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 3478999987543 3555566543 79999999998 6789999998876
No 123
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=66.54 E-value=1.1 Score=39.82 Aligned_cols=44 Identities=25% Similarity=0.561 Sum_probs=22.7
Q ss_pred CCcceeeccccCcceecCC-----CCcccHhHHHHhhccCCCCcccccc
Q 026563 138 EEECGICLEICCKIVLPDC-----NHSMCMRCYRNWRARSQSCPFCRDS 181 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~C-----gH~FC~~Ci~~w~~~~~~CP~CR~~ 181 (237)
...||||-....-.++..= .|.+|.-|-.+|......||.|-..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 4689999987654433222 3568999999999999999999543
No 124
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.77 E-value=5 Score=39.84 Aligned_cols=44 Identities=30% Similarity=0.677 Sum_probs=36.9
Q ss_pred cceeeccccCcceecCCCC-cccHhHHHHhhc--c----CCCCcccccccc
Q 026563 140 ECGICLEICCKIVLPDCNH-SMCMRCYRNWRA--R----SQSCPFCRDSLR 183 (237)
Q Consensus 140 ~C~IC~~~~~~~v~~~CgH-~FC~~Ci~~w~~--~----~~~CP~CR~~~~ 183 (237)
.|+||-....-...-+||| .-|..|..+... . ...||.||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5999999888888899999 799999977654 3 678899998665
No 125
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=64.61 E-value=3.9 Score=40.78 Aligned_cols=46 Identities=24% Similarity=0.595 Sum_probs=34.5
Q ss_pred CCcceeeccccCcc----------eecCCCCcc--------------------cHhHHHHhhc--------cCCCCcccc
Q 026563 138 EEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPFCR 179 (237)
Q Consensus 138 ~~~C~IC~~~~~~~----------v~~~CgH~F--------------------C~~Ci~~w~~--------~~~~CP~CR 179 (237)
.-.|.-|++.+.+| ..++||-.| |..|-.++.. +...||.|-
T Consensus 101 ~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CG 180 (750)
T COG0068 101 AATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKCG 180 (750)
T ss_pred hhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcccC
Confidence 35799999887753 446788777 9999988755 457999996
Q ss_pred cccc
Q 026563 180 DSLR 183 (237)
Q Consensus 180 ~~~~ 183 (237)
-.+.
T Consensus 181 P~~~ 184 (750)
T COG0068 181 PHLF 184 (750)
T ss_pred CCeE
Confidence 5554
No 126
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=64.39 E-value=3.7 Score=37.12 Aligned_cols=44 Identities=23% Similarity=0.530 Sum_probs=33.3
Q ss_pred CCcceeeccccC---cceecCCCCcccHhHHHHhhc---cCCCCcccccc
Q 026563 138 EEECGICLEICC---KIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDS 181 (237)
Q Consensus 138 ~~~C~IC~~~~~---~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~ 181 (237)
-+.||+=.+.-. .|+.+.|||..-.+-++.... .+..||.|-..
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 367887766554 478899999999988877655 36899999443
No 127
>PLN02189 cellulose synthase
Probab=64.36 E-value=6.4 Score=41.00 Aligned_cols=50 Identities=26% Similarity=0.732 Sum_probs=36.8
Q ss_pred CCCcceeeccccC-----cc--eecCCCCcccHhHHHH-hhccCCCCccccccccccC
Q 026563 137 REEECGICLEICC-----KI--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVN 186 (237)
Q Consensus 137 ~~~~C~IC~~~~~-----~~--v~~~CgH~FC~~Ci~~-w~~~~~~CP~CR~~~~~~~ 186 (237)
....|.||-+... ++ ..-.||-..|..|++- ..+.++.||-|+...++..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 3458999999865 22 2235888899999954 3447999999999988544
No 128
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=62.93 E-value=1.9 Score=38.85 Aligned_cols=44 Identities=18% Similarity=0.462 Sum_probs=33.1
Q ss_pred CCcceeeccccCcceec----CCC--CcccHhHHHHhhccCCCCcccccc
Q 026563 138 EEECGICLEICCKIVLP----DCN--HSMCMRCYRNWRARSQSCPFCRDS 181 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~----~Cg--H~FC~~Ci~~w~~~~~~CP~CR~~ 181 (237)
...||+|-....-.++. .=| |..|.-|-.+|......||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 45899999876533221 234 557999999999999999999763
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=61.27 E-value=6 Score=35.92 Aligned_cols=45 Identities=24% Similarity=0.594 Sum_probs=36.3
Q ss_pred CcceeeccccCc----ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|+||-+.... .+-.+|||..|..|...-...+..||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 679999997631 233579999999999888889999999996654
No 130
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=61.16 E-value=4.4 Score=28.10 Aligned_cols=12 Identities=25% Similarity=0.999 Sum_probs=8.8
Q ss_pred cccHhHHHHhhc
Q 026563 159 SMCMRCYRNWRA 170 (237)
Q Consensus 159 ~FC~~Ci~~w~~ 170 (237)
.||+.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999976
No 131
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=61.16 E-value=7.6 Score=35.19 Aligned_cols=48 Identities=27% Similarity=0.685 Sum_probs=31.3
Q ss_pred CCCCcceeeccccC--------------c---c--eecCCCCcccHhHHHHhhc---------cCCCCcccccccc
Q 026563 136 EREEECGICLEICC--------------K---I--VLPDCNHSMCMRCYRNWRA---------RSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~--------------~---~--v~~~CgH~FC~~Ci~~w~~---------~~~~CP~CR~~~~ 183 (237)
..+.+|++|+..-. + | ...||||.--..=..-|.. -+..||+|-..+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 34678999987532 1 1 3358999744444455644 3579999987775
No 132
>PLN02436 cellulose synthase A
Probab=60.29 E-value=8.2 Score=40.35 Aligned_cols=50 Identities=26% Similarity=0.729 Sum_probs=36.3
Q ss_pred CCCcceeeccccC-----ccee--cCCCCcccHhHHHH-hhccCCCCccccccccccC
Q 026563 137 REEECGICLEICC-----KIVL--PDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVN 186 (237)
Q Consensus 137 ~~~~C~IC~~~~~-----~~v~--~~CgH~FC~~Ci~~-w~~~~~~CP~CR~~~~~~~ 186 (237)
....|.||-+... ++.+ -.||-..|..|++- ..+.++.||-|+...++..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 3458999999864 2222 34777799999954 3347899999999988544
No 133
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=59.50 E-value=2.5 Score=28.10 Aligned_cols=17 Identities=41% Similarity=1.251 Sum_probs=14.5
Q ss_pred cCCCCcccHhHHHHhhc
Q 026563 154 PDCNHSMCMRCYRNWRA 170 (237)
Q Consensus 154 ~~CgH~FC~~Ci~~w~~ 170 (237)
+.|||.||..|-.+|..
T Consensus 44 ~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 44 PKCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCCeECCCCCCcCCC
Confidence 47999999999988854
No 134
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=59.33 E-value=3.2 Score=37.55 Aligned_cols=44 Identities=18% Similarity=0.492 Sum_probs=33.1
Q ss_pred CCCcceeeccccCccee---cCCC--CcccHhHHHHhhccCCCCccccc
Q 026563 137 REEECGICLEICCKIVL---PDCN--HSMCMRCYRNWRARSQSCPFCRD 180 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~---~~Cg--H~FC~~Ci~~w~~~~~~CP~CR~ 180 (237)
....||+|-....-.++ ..=| |..|.-|-.+|......||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45789999987643322 1234 45799999999999999999975
No 135
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.60 E-value=3.8 Score=36.76 Aligned_cols=55 Identities=25% Similarity=0.494 Sum_probs=44.5
Q ss_pred CCCCcceeeccccCccee-cCCCCcccHhHHHHhhccCCCCccccccccccCCCCc
Q 026563 136 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDL 190 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~ 190 (237)
..+..|-+|...+..+.. -.|+|-||..|-..|.....-||.|+...+.+..+..
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~aG~p 158 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVLAGMP 158 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCceeccCc
Confidence 455789999998886644 5699999999999999999999999988775555443
No 136
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=58.55 E-value=24 Score=31.28 Aligned_cols=38 Identities=26% Similarity=0.613 Sum_probs=22.7
Q ss_pred CcceeeccccCccee-cCCCCc----ccHhHHHHhhc-cCCCCc
Q 026563 139 EECGICLEICCKIVL-PDCNHS----MCMRCYRNWRA-RSQSCP 176 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~-~~CgH~----FC~~Ci~~w~~-~~~~CP 176 (237)
..|.||++...+.+- .+=-|. =|++|.++|.. .+..||
T Consensus 31 sfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred eecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 356666665554321 111222 25899999966 788898
No 137
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.55 E-value=8.8 Score=29.52 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=32.1
Q ss_pred CcceeeccccCcc--------------eecCCCCcccHhHHHHhhccCCCCcccc
Q 026563 139 EECGICLEICCKI--------------VLPDCNHSMCMRCYRNWRARSQSCPFCR 179 (237)
Q Consensus 139 ~~C~IC~~~~~~~--------------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR 179 (237)
..|--|...|.++ .-..|++.||.+|=.=+.+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4588898877643 1367999999999777777778899995
No 138
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=58.00 E-value=4.1 Score=39.83 Aligned_cols=23 Identities=30% Similarity=0.837 Sum_probs=18.0
Q ss_pred cCCCCcccHhHHHHhhccCCCCcccc
Q 026563 154 PDCNHSMCMRCYRNWRARSQSCPFCR 179 (237)
Q Consensus 154 ~~CgH~FC~~Ci~~w~~~~~~CP~CR 179 (237)
..||+.||..|... .+..||.|-
T Consensus 535 ~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred HHHHHHHHHHHHhc---cCCCCCchH
Confidence 46999999999544 566699993
No 139
>PLN02400 cellulose synthase
Probab=57.16 E-value=12 Score=39.14 Aligned_cols=57 Identities=25% Similarity=0.624 Sum_probs=39.1
Q ss_pred CCCcceeeccccC-----cce--ecCCCCcccHhHHHH-hhccCCCCccccccccccCCCCccccC
Q 026563 137 REEECGICLEICC-----KIV--LPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGDLWIYT 194 (237)
Q Consensus 137 ~~~~C~IC~~~~~-----~~v--~~~CgH~FC~~Ci~~-w~~~~~~CP~CR~~~~~~~~~~~~~~~ 194 (237)
....|.||-+..- ++. .-.|+-.-|+.|++- ..+.++.||.|+...++.. ..-++..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K-gsprV~G 99 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK-GSPRVEG 99 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc-CCCCCCc
Confidence 3458999999865 222 235777799999943 3447999999999988543 3333444
No 140
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=54.49 E-value=4.1 Score=37.88 Aligned_cols=46 Identities=22% Similarity=0.641 Sum_probs=0.0
Q ss_pred CCcceeeccccC--------------c---c--eecCCCCcccHhHHHHhhc---------cCCCCcccccccc
Q 026563 138 EEECGICLEICC--------------K---I--VLPDCNHSMCMRCYRNWRA---------RSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~--------------~---~--v~~~CgH~FC~~Ci~~w~~---------~~~~CP~CR~~~~ 183 (237)
..+|++|...-. + | ..-||||.--.+...-|-. -+..||+|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999996522 1 1 3457999876777777865 2479999988886
No 141
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=53.96 E-value=13 Score=38.79 Aligned_cols=58 Identities=21% Similarity=0.511 Sum_probs=40.0
Q ss_pred CCCcceeeccccC-----cce--ecCCCCcccHhHHHH-hhccCCCCccccccccccCCCCccccCC
Q 026563 137 REEECGICLEICC-----KIV--LPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGDLWIYTS 195 (237)
Q Consensus 137 ~~~~C~IC~~~~~-----~~v--~~~CgH~FC~~Ci~~-w~~~~~~CP~CR~~~~~~~~~~~~~~~~ 195 (237)
....|.||-+... ++. .-.|+-..|..|++- ..+.++.||.|+...++.. ...++..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~-~~~~~~~d 79 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK-GCPRVEGD 79 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCccCC
Confidence 4467999998754 222 235777799999943 3447899999999987543 34445444
No 142
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=53.07 E-value=11 Score=24.80 Aligned_cols=26 Identities=27% Similarity=0.829 Sum_probs=15.8
Q ss_pred cCCCCcccHhHHHHhhccCCCCcccc
Q 026563 154 PDCNHSMCMRCYRNWRARSQSCPFCR 179 (237)
Q Consensus 154 ~~CgH~FC~~Ci~~w~~~~~~CP~CR 179 (237)
+.|++.||.+|=.=..+.-..||-|-
T Consensus 25 ~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 25 PKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCCccccCcChhhhccccCCcCCC
Confidence 57999999999544445667899884
No 143
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=52.75 E-value=7.7 Score=25.39 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=21.9
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhc--cCCCCccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRD 180 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~ 180 (237)
...||.|.+.+.... + ...|...... +...||+|..
T Consensus 2 ~f~CP~C~~~~~~~~-L------~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS-L------VEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHHH-H------HHHHHhHCcCCCCCccCCCchh
Confidence 468999998544332 2 2334444333 4678999975
No 144
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=52.37 E-value=4.7 Score=37.52 Aligned_cols=30 Identities=37% Similarity=0.823 Sum_probs=0.0
Q ss_pred eecCCCCcccHhHHHHhhc------cCCCCccccccccc
Q 026563 152 VLPDCNHSMCMRCYRNWRA------RSQSCPFCRDSLRR 184 (237)
Q Consensus 152 v~~~CgH~FC~~Ci~~w~~------~~~~CP~CR~~~~~ 184 (237)
+-++|||.+-.. .|.. ....||+||..=..
T Consensus 305 VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 305 VYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp ---------------------------------------
T ss_pred eeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 557899986653 5643 36799999976543
No 145
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.63 E-value=2.4 Score=37.57 Aligned_cols=44 Identities=30% Similarity=0.641 Sum_probs=34.0
Q ss_pred CCcceeeccccC------cceecC--------CCCcccHhHHHHhhc-cCCCCcccccc
Q 026563 138 EEECGICLEICC------KIVLPD--------CNHSMCMRCYRNWRA-RSQSCPFCRDS 181 (237)
Q Consensus 138 ~~~C~IC~~~~~------~~v~~~--------CgH~FC~~Ci~~w~~-~~~~CP~CR~~ 181 (237)
+..|.||...+. .|.++. |||..|..|+..-+. ....||+||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 356999988776 244445 999999999988765 34799999875
No 146
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.80 E-value=4.6 Score=40.63 Aligned_cols=42 Identities=26% Similarity=0.493 Sum_probs=30.3
Q ss_pred CCCCcceeeccccC-------cceecCCCCcccHhHHHHhhccCCCCccc
Q 026563 136 EREEECGICLEICC-------KIVLPDCNHSMCMRCYRNWRARSQSCPFC 178 (237)
Q Consensus 136 ~~~~~C~IC~~~~~-------~~v~~~CgH~FC~~Ci~~w~~~~~~CP~C 178 (237)
..+..|.-|.+... ..+...|||.||..|+..-..++. |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 44568999998765 346688999999999876555444 5444
No 147
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=50.39 E-value=15 Score=24.45 Aligned_cols=30 Identities=23% Similarity=0.606 Sum_probs=23.8
Q ss_pred CCcceeeccccC--c-c-eecCCCCcccHhHHHH
Q 026563 138 EEECGICLEICC--K-I-VLPDCNHSMCMRCYRN 167 (237)
Q Consensus 138 ~~~C~IC~~~~~--~-~-v~~~CgH~FC~~Ci~~ 167 (237)
...|++|-+.+. + . +-+.||-.+|+.|+.+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 467999999994 3 3 4488999999999655
No 148
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=50.34 E-value=4.2 Score=27.82 Aligned_cols=32 Identities=19% Similarity=0.493 Sum_probs=16.9
Q ss_pred CCCcceeeccccCcc----eecCCCCcccHhHHHHh
Q 026563 137 REEECGICLEICCKI----VLPDCNHSMCMRCYRNW 168 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~w 168 (237)
+...|.+|...|.-. .--.||+.||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 457899999988532 22579999999997654
No 149
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=49.60 E-value=13 Score=21.63 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=20.4
Q ss_pred ceeeccccCc--ceecCCCCcccHhHHHHhhccCCCCccccccc
Q 026563 141 CGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182 (237)
Q Consensus 141 C~IC~~~~~~--~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~ 182 (237)
|..|...+.. ..+..=+..||..| ..|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcC
Confidence 6677776654 33333355666655 6777777665
No 150
>PRK04023 DNA polymerase II large subunit; Validated
Probab=49.21 E-value=15 Score=38.34 Aligned_cols=44 Identities=20% Similarity=0.449 Sum_probs=33.3
Q ss_pred CCcceeeccccCcceecCCCC-----cccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNH-----SMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH-----~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
...|+-|-........+.||. .||..| .+......||-|.....
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPT 674 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCC
Confidence 467999988876667788984 499999 44445578999987765
No 151
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=48.49 E-value=14 Score=32.02 Aligned_cols=28 Identities=25% Similarity=0.691 Sum_probs=23.0
Q ss_pred cHhHHHHhhccCCCCccccccccccCCC
Q 026563 161 CMRCYRNWRARSQSCPFCRDSLRRVNSG 188 (237)
Q Consensus 161 C~~Ci~~w~~~~~~CP~CR~~~~~~~~~ 188 (237)
|.+|-.....+...||+|++.-...++.
T Consensus 197 C~sC~qqIHRNAPiCPlCK~KsRSrnpK 224 (230)
T PF10146_consen 197 CQSCHQQIHRNAPICPLCKAKSRSRNPK 224 (230)
T ss_pred hHhHHHHHhcCCCCCcccccccccCCCC
Confidence 9999999999999999998766554443
No 152
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=47.80 E-value=4.3 Score=22.09 Aligned_cols=13 Identities=23% Similarity=0.624 Sum_probs=6.2
Q ss_pred hhccCCCCccccc
Q 026563 168 WRARSQSCPFCRD 180 (237)
Q Consensus 168 w~~~~~~CP~CR~ 180 (237)
.......||.|-.
T Consensus 9 ~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 9 IEDDAKFCPNCGT 21 (23)
T ss_pred CCCcCcchhhhCC
Confidence 3334455555544
No 153
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=47.57 E-value=5.4 Score=24.92 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=17.3
Q ss_pred cCCCCcccHhHHHHhhccCCCCccccc-cccc
Q 026563 154 PDCNHSMCMRCYRNWRARSQSCPFCRD-SLRR 184 (237)
Q Consensus 154 ~~CgH~FC~~Ci~~w~~~~~~CP~CR~-~~~~ 184 (237)
..|||.|-...-..= .....||.|.. .+.+
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r 39 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGSTEVRR 39 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCCCceEE
Confidence 367777655321000 24679999988 5543
No 155
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=45.31 E-value=22 Score=23.91 Aligned_cols=43 Identities=23% Similarity=0.479 Sum_probs=27.7
Q ss_pred cceeeccccCcc--eecCCCC--cccHhHHHHhhccCCCCccccccccc
Q 026563 140 ECGICLEICCKI--VLPDCNH--SMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 140 ~C~IC~~~~~~~--v~~~CgH--~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
.|-.|-..+... --.-|.+ .||..|....+ ...||.|...+.+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 355565554421 1122554 69999998876 5889999887754
No 156
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=44.96 E-value=16 Score=23.74 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=22.0
Q ss_pred CcceeeccccCc----ceecCCCCcccHhHHHHhh
Q 026563 139 EECGICLEICCK----IVLPDCNHSMCMRCYRNWR 169 (237)
Q Consensus 139 ~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~ 169 (237)
..|.+|...|.. ..-..||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 468888776653 2335799999999976543
No 157
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=44.66 E-value=16 Score=32.21 Aligned_cols=47 Identities=19% Similarity=0.563 Sum_probs=36.0
Q ss_pred CCcceeeccccCc----ceecCCC-----CcccHhHHHHhhc--cCCCCccccccccc
Q 026563 138 EEECGICLEICCK----IVLPDCN-----HSMCMRCYRNWRA--RSQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~----~v~~~Cg-----H~FC~~Ci~~w~~--~~~~CP~CR~~~~~ 184 (237)
+..|-||.+.... +...+|. +..|..|+..|.. +...|..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4689999996653 3456664 2368999999998 78999999876653
No 158
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=42.44 E-value=18 Score=31.38 Aligned_cols=27 Identities=26% Similarity=0.776 Sum_probs=21.7
Q ss_pred cHhHHHHhhccCCCCccccccccccCC
Q 026563 161 CMRCYRNWRARSQSCPFCRDSLRRVNS 187 (237)
Q Consensus 161 C~~Ci~~w~~~~~~CP~CR~~~~~~~~ 187 (237)
|.+|-.+...+...||+|+......++
T Consensus 252 ClsChqqIHRNAPiCPlCKaKsRSrNP 278 (286)
T KOG4451|consen 252 CLSCHQQIHRNAPICPLCKAKSRSRNP 278 (286)
T ss_pred HHHHHHHHhcCCCCCcchhhccccCCC
Confidence 888988888899999999876654444
No 159
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.04 E-value=14 Score=29.19 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=17.2
Q ss_pred cceeeccccCcceecCCCCcccH
Q 026563 140 ECGICLEICCKIVLPDCNHSMCM 162 (237)
Q Consensus 140 ~C~IC~~~~~~~v~~~CgH~FC~ 162 (237)
.=-||.+.-...+.-.|||+||.
T Consensus 59 hlfi~qs~~~rv~rcecghsf~d 81 (165)
T COG4647 59 HLFICQSAQKRVIRCECGHSFGD 81 (165)
T ss_pred cEEEEecccccEEEEeccccccC
Confidence 34577776666666789999996
No 160
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=41.07 E-value=11 Score=24.62 Aligned_cols=12 Identities=33% Similarity=0.960 Sum_probs=6.4
Q ss_pred CCCCcccccccc
Q 026563 172 SQSCPFCRDSLR 183 (237)
Q Consensus 172 ~~~CP~CR~~~~ 183 (237)
...||+|..++.
T Consensus 20 ~~~CPlC~r~l~ 31 (54)
T PF04423_consen 20 KGCCPLCGRPLD 31 (54)
T ss_dssp SEE-TTT--EE-
T ss_pred CCcCCCCCCCCC
Confidence 349999999887
No 161
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=38.92 E-value=19 Score=30.29 Aligned_cols=39 Identities=28% Similarity=0.686 Sum_probs=26.6
Q ss_pred CCCcceeeccc-cC----c---ceecCCCCcccHhHHHHhhccCCCCccccc
Q 026563 137 REEECGICLEI-CC----K---IVLPDCNHSMCMRCYRNWRARSQSCPFCRD 180 (237)
Q Consensus 137 ~~~~C~IC~~~-~~----~---~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~ 180 (237)
....|.+|.+. .. . ..-..|+-.||..|..+ ..||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 45789999853 11 1 12257999999999652 67999943
No 162
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=38.61 E-value=8.9 Score=21.55 Aligned_cols=7 Identities=29% Similarity=0.942 Sum_probs=3.0
Q ss_pred cCCCCcc
Q 026563 154 PDCNHSM 160 (237)
Q Consensus 154 ~~CgH~F 160 (237)
+.|||.|
T Consensus 18 p~CG~~F 24 (26)
T PF10571_consen 18 PHCGYDF 24 (26)
T ss_pred CCCCCCC
Confidence 3344443
No 163
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.54 E-value=24 Score=25.02 Aligned_cols=26 Identities=27% Similarity=0.613 Sum_probs=20.3
Q ss_pred CCcccHhHHHHhhccCCCCccccccccc
Q 026563 157 NHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 157 gH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
-|.||..|.+.-+ ...||.|-..+..
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchhhc
Confidence 3689999998654 4789999877653
No 164
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=36.82 E-value=35 Score=25.79 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=19.3
Q ss_pred CCcccHhHHHHhhc---------cCCCCccccccc
Q 026563 157 NHSMCMRCYRNWRA---------RSQSCPFCRDSL 182 (237)
Q Consensus 157 gH~FC~~Ci~~w~~---------~~~~CP~CR~~~ 182 (237)
.=.||..|+..+.. ..-.||.||..-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 55699999977654 346899998743
No 165
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=36.05 E-value=14 Score=28.31 Aligned_cols=45 Identities=24% Similarity=0.522 Sum_probs=28.1
Q ss_pred CCCcceeeccccC-----cceecCCCCcccHhHHHHhh-ccCCCCcccccc
Q 026563 137 REEECGICLEICC-----KIVLPDCNHSMCMRCYRNWR-ARSQSCPFCRDS 181 (237)
Q Consensus 137 ~~~~C~IC~~~~~-----~~v~~~CgH~FC~~Ci~~w~-~~~~~CP~CR~~ 181 (237)
.+..|.+|...|. ...-..|+|.+|..|-..-. ...-.|.+|...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHH
Confidence 5678999988764 23457899999999954411 122368888553
No 166
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.50 E-value=8.1 Score=30.72 Aligned_cols=58 Identities=26% Similarity=0.724 Sum_probs=32.6
Q ss_pred ccCCCCCcceeeccc-cCcceecCCCCc-------ccHhHHHHhhcc----CCCCccccccccccCCCCccccC
Q 026563 133 IDIEREEECGICLEI-CCKIVLPDCNHS-------MCMRCYRNWRAR----SQSCPFCRDSLRRVNSGDLWIYT 194 (237)
Q Consensus 133 ~~~~~~~~C~IC~~~-~~~~v~~~CgH~-------FC~~Ci~~w~~~----~~~CP~CR~~~~~~~~~~~~~~~ 194 (237)
.....+-.|.||... |.+ .|||. ||..|--+...+ .-.|.+|+....-....--|+..
T Consensus 60 aGv~ddatC~IC~KTKFAD----G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~~ 129 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFAD----GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFYN 129 (169)
T ss_pred cccCcCcchhhhhhccccc----ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHHh
Confidence 455678899999874 444 47774 344443332222 23688887765433333445443
No 167
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=35.36 E-value=12 Score=38.13 Aligned_cols=46 Identities=26% Similarity=0.705 Sum_probs=34.7
Q ss_pred CCcceeeccccCc--ceecCCCCcccHhHHHHhhc------cCCCCcccccccc
Q 026563 138 EEECGICLEICCK--IVLPDCNHSMCMRCYRNWRA------RSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~--~v~~~CgH~FC~~Ci~~w~~------~~~~CP~CR~~~~ 183 (237)
...|..|..-... -+-..|||.+|..|++.|.- ....|++|+..-+
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 4679999886654 46688999999999999941 3467888876543
No 168
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.48 E-value=17 Score=26.93 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=10.7
Q ss_pred cccHhHHHHhhc
Q 026563 159 SMCMRCYRNWRA 170 (237)
Q Consensus 159 ~FC~~Ci~~w~~ 170 (237)
.||+.|+..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999976
No 169
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=34.38 E-value=31 Score=31.52 Aligned_cols=42 Identities=19% Similarity=0.449 Sum_probs=28.9
Q ss_pred CCcceeeccccCcc---eecCCCCcccHhHHHHhhccCCCCcccc
Q 026563 138 EEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCR 179 (237)
Q Consensus 138 ~~~C~IC~~~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~CR 179 (237)
+..|-.|.+..... .-..|.|.||.+|=.=..+.-..||-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 45588885554432 3367899999999655555667899885
No 170
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.76 E-value=20 Score=34.82 Aligned_cols=44 Identities=25% Similarity=0.759 Sum_probs=35.7
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
+....|.+|.... .....+|. +..|+.+|......||.|+..+.
T Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhh
Confidence 4457899999988 55556787 56888999999999999988876
No 171
>PLN02195 cellulose synthase A
Probab=33.44 E-value=44 Score=34.84 Aligned_cols=46 Identities=17% Similarity=0.455 Sum_probs=34.1
Q ss_pred CCcceeeccccC-----cc--eecCCCCcccHhHHHHh-hccCCCCcccccccc
Q 026563 138 EEECGICLEICC-----KI--VLPDCNHSMCMRCYRNW-RARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~-----~~--v~~~CgH~FC~~Ci~~w-~~~~~~CP~CR~~~~ 183 (237)
...|.||-+... ++ ..-.||-.-|+.|++-= .+.++.||.|+...+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 457999998654 22 22458888999999432 347899999999887
No 172
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.33 E-value=14 Score=30.38 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=18.4
Q ss_pred CCCcceeeccccCc---ceecCCCCcccH
Q 026563 137 REEECGICLEICCK---IVLPDCNHSMCM 162 (237)
Q Consensus 137 ~~~~C~IC~~~~~~---~v~~~CgH~FC~ 162 (237)
..-+|.||+|.+.. ...++|-.++|+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 34689999999884 355788766553
No 173
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=32.47 E-value=7.1 Score=25.73 Aligned_cols=17 Identities=29% Similarity=1.157 Sum_probs=14.2
Q ss_pred cCCCCcccHhHHHHhhc
Q 026563 154 PDCNHSMCMRCYRNWRA 170 (237)
Q Consensus 154 ~~CgH~FC~~Ci~~w~~ 170 (237)
..|++.||..|-.+|..
T Consensus 44 ~~C~~~fC~~C~~~~H~ 60 (64)
T PF01485_consen 44 PSCGTEFCFKCGEPWHE 60 (64)
T ss_dssp TSCCSEECSSSTSESCT
T ss_pred CCCCCcCccccCcccCC
Confidence 45999999999888854
No 174
>PF14353 CpXC: CpXC protein
Probab=29.17 E-value=33 Score=26.33 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=22.5
Q ss_pred CcceeeccccCcceecCCCCcccHhHHHHhhc---cCCCCcccccccc
Q 026563 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~~~ 183 (237)
.+|+-|...+...+-+.-.-..-..=..+.+. ...+||.|...+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 46776666655322221111112222333333 4579999987764
No 175
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=28.47 E-value=19 Score=32.70 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=36.6
Q ss_pred CCCcceeeccccCcceecCCCCc-ccHhHHHHh-hccCCCCcccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHS-MCMRCYRNW-RARSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w-~~~~~~CP~CR~~~~ 183 (237)
....|.+|.+.-......+|||. ||..|..+- .++...||+|...+.
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 45689999988777777899995 999996554 557788999976554
No 176
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=27.89 E-value=36 Score=36.46 Aligned_cols=46 Identities=24% Similarity=0.527 Sum_probs=30.6
Q ss_pred CCcceeeccccCcceecCCCCc-----ccHhHHHHhhcc---CCCCcccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHS-----MCMRCYRNWRAR---SQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~-----FC~~Ci~~w~~~---~~~CP~CR~~~~ 183 (237)
...|+-|-........+.||+. .|..|-.+.-.. ...||.|..++.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 4689999886665666778865 388775543221 347888877665
No 177
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.36 E-value=14 Score=21.40 Aligned_cols=23 Identities=30% Similarity=0.777 Sum_probs=10.1
Q ss_pred CcccHhHHHHhhc----cCCCCccccc
Q 026563 158 HSMCMRCYRNWRA----RSQSCPFCRD 180 (237)
Q Consensus 158 H~FC~~Ci~~w~~----~~~~CP~CR~ 180 (237)
|.||..|-.+-.. ....||.|..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 5666666544322 3456776653
No 178
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.09 E-value=25 Score=33.23 Aligned_cols=45 Identities=22% Similarity=0.643 Sum_probs=30.5
Q ss_pred Ccceeeccc---cCcceecCCCCcccHhHHHHhhc--------------------------cCCCCcccccccc
Q 026563 139 EECGICLEI---CCKIVLPDCNHSMCMRCYRNWRA--------------------------RSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~---~~~~v~~~CgH~FC~~Ci~~w~~--------------------------~~~~CP~CR~~~~ 183 (237)
-.|+-.... ....+.-+|||.||..|..+|.. +.+.||.|..++.
T Consensus 164 ~~C~~av~~~~~~~~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~ie 237 (444)
T KOG1815|consen 164 PGCGLAVKFGSLESVEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIE 237 (444)
T ss_pred CCCCceeeccCCCccceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchh
Confidence 455544442 33456778999999999877754 2357999977765
No 179
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=26.92 E-value=40 Score=21.20 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=14.9
Q ss_pred ceeeccccCcceecCCCCcccHh
Q 026563 141 CGICLEICCKIVLPDCNHSMCMR 163 (237)
Q Consensus 141 C~IC~~~~~~~v~~~CgH~FC~~ 163 (237)
|..|.....--+-+.|+|.+|..
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCC
Confidence 66676544434557799988853
No 180
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.90 E-value=24 Score=21.20 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=10.0
Q ss_pred cCCCCccccccccc
Q 026563 171 RSQSCPFCRDSLRR 184 (237)
Q Consensus 171 ~~~~CP~CR~~~~~ 184 (237)
....||.|...+.+
T Consensus 25 ~~~~CP~Cg~~~~r 38 (41)
T smart00834 25 PLATCPECGGDVRR 38 (41)
T ss_pred CCCCCCCCCCccee
Confidence 45789999876543
No 181
>PF15616 TerY-C: TerY-C metal binding domain
Probab=25.78 E-value=29 Score=27.40 Aligned_cols=44 Identities=18% Similarity=0.509 Sum_probs=32.8
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.+...-.||-|-..+--.+- .||+.||.. -....+||-|.....
T Consensus 73 eL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~-----g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 73 ELIGAPGCPHCGNQYAFAVC-GCGKLFCID-----GEGEVTCPWCGNEGS 116 (131)
T ss_pred HhcCCCCCCCCcChhcEEEe-cCCCEEEeC-----CCCCEECCCCCCeee
Confidence 33445789999887766665 699999964 235789999987765
No 182
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=24.75 E-value=38 Score=29.80 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=32.8
Q ss_pred CcceeeccccCccee-cCCCCcccHhHHHHhhcc--CCCCcccccc
Q 026563 139 EECGICLEICCKIVL-PDCNHSMCMRCYRNWRAR--SQSCPFCRDS 181 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~--~~~CP~CR~~ 181 (237)
+.|||=...+..|++ ..|||.|=++=|...+.. .-.||+=-.+
T Consensus 177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred ccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 679988777777755 789999999999888764 5677764433
No 183
>PRK11595 DNA utilization protein GntX; Provisional
Probab=24.44 E-value=61 Score=27.58 Aligned_cols=37 Identities=24% Similarity=0.530 Sum_probs=19.5
Q ss_pred cceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccc
Q 026563 140 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDS 181 (237)
Q Consensus 140 ~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~ 181 (237)
.|.+|-..+... .+..|..|...+......||.|-.+
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~~~C~~Cg~~ 43 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTLKTCCPQCGLP 43 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcccCcCccCCCc
Confidence 577776654311 1235667766653323456666544
No 184
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.37 E-value=19 Score=29.32 Aligned_cols=24 Identities=29% Similarity=0.756 Sum_probs=17.3
Q ss_pred CCcccHhHHHHhhccCCCCcccccccc
Q 026563 157 NHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 157 gH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.+.||..|-.+-. ..||.|..++.
T Consensus 27 ~~~fC~kCG~~tI---~~Cp~C~~~Ir 50 (158)
T PF10083_consen 27 REKFCSKCGAKTI---TSCPNCSTPIR 50 (158)
T ss_pred HHHHHHHhhHHHH---HHCcCCCCCCC
Confidence 4568888876643 57888887775
No 185
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=24.28 E-value=43 Score=22.86 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=11.7
Q ss_pred cCCCCccccccccccCCCC
Q 026563 171 RSQSCPFCRDSLRRVNSGD 189 (237)
Q Consensus 171 ~~~~CP~CR~~~~~~~~~~ 189 (237)
....||.|...-...+...
T Consensus 14 ~~~~CP~Cgs~~~T~~W~G 32 (61)
T PRK08351 14 TEDRCPVCGSRDLSDEWFD 32 (61)
T ss_pred CCCcCCCCcCCcccccccc
Confidence 4568999977653333333
No 186
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=24.13 E-value=47 Score=21.62 Aligned_cols=9 Identities=44% Similarity=1.556 Sum_probs=6.8
Q ss_pred ccCCCCccc
Q 026563 170 ARSQSCPFC 178 (237)
Q Consensus 170 ~~~~~CP~C 178 (237)
.....||.|
T Consensus 47 ~~~~~CP~C 55 (55)
T PF14311_consen 47 RRGKGCPYC 55 (55)
T ss_pred cCCCCCCCC
Confidence 457889887
No 187
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=23.26 E-value=43 Score=23.12 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=11.3
Q ss_pred cCCCCccccccccccCC
Q 026563 171 RSQSCPFCRDSLRRVNS 187 (237)
Q Consensus 171 ~~~~CP~CR~~~~~~~~ 187 (237)
....||.|...-...+.
T Consensus 16 ~~~~Cp~Cgs~~~S~~w 32 (64)
T PRK06393 16 PEKTCPVHGDEKTTTEW 32 (64)
T ss_pred CCCcCCCCCCCcCCcCc
Confidence 45699999876443333
No 188
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=23.19 E-value=33 Score=21.98 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=19.2
Q ss_pred ceeeccccCcc--eecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 141 CGICLEICCKI--VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 141 C~IC~~~~~~~--v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
|.-|...+... ++..-|..||.+| ..|-.|+.++.
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~C--------f~C~~C~~~l~ 37 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPEC--------FKCSKCGKPLN 37 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTT--------SBETTTTCBTT
T ss_pred CCCCCCCccCcEEEEEeCCcEEEccc--------cccCCCCCccC
Confidence 44455555432 2224556666655 67777777665
No 189
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=22.43 E-value=45 Score=31.25 Aligned_cols=49 Identities=29% Similarity=0.706 Sum_probs=33.9
Q ss_pred CCCcceeeccccCcc--eecCCCCcccHhHHHHhhcc------------------------CCCCcccccccccc
Q 026563 137 REEECGICLEICCKI--VLPDCNHSMCMRCYRNWRAR------------------------SQSCPFCRDSLRRV 185 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~--v~~~CgH~FC~~Ci~~w~~~------------------------~~~CP~CR~~~~~~ 185 (237)
...+|+||+-++... ...-|.-..|.+|..+...- -..||.|..+-.++
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~v 147 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRV 147 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccce
Confidence 347899999887653 22457888999998765330 14899997765533
No 190
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=22.32 E-value=44 Score=33.73 Aligned_cols=24 Identities=25% Similarity=0.865 Sum_probs=18.1
Q ss_pred ccHhHHHHhhc--------cCCCCcccccccc
Q 026563 160 MCMRCYRNWRA--------RSQSCPFCRDSLR 183 (237)
Q Consensus 160 FC~~Ci~~w~~--------~~~~CP~CR~~~~ 183 (237)
+|..|..++.. .-.+||.|--.+.
T Consensus 120 ~C~~C~~ey~~p~~rr~h~~~~~C~~Cgp~l~ 151 (711)
T TIGR00143 120 LCPDCAKEYKDPLDRRFHAQPIACPRCGPQLN 151 (711)
T ss_pred CCHHHHHHhcCCccccCCCCCccCCCCCcEEE
Confidence 39999999855 3469999965554
No 191
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=22.30 E-value=1e+02 Score=26.40 Aligned_cols=40 Identities=20% Similarity=0.532 Sum_probs=25.1
Q ss_pred cccHhHHHHhhc--------cCCCCccccccccccCCCCccccCCcchhhhh
Q 026563 159 SMCMRCYRNWRA--------RSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 202 (237)
Q Consensus 159 ~FC~~Ci~~w~~--------~~~~CP~CR~~~~~~~~~~~~~~~~~~ei~d~ 202 (237)
.+|.+|+.+-.. .-..||.|.+-... ..|...++.++.+.
T Consensus 14 ~lC~~C~~~~~~i~ei~~~i~v~~C~~Cg~~~~~----~~W~~~~~~el~~~ 61 (236)
T PF04981_consen 14 GLCPDCYLKRFDIIEIPDRIEVTICPKCGRYRIG----GRWVDPESRELEEL 61 (236)
T ss_pred ccChHHhcccCCeeecCCccCceECCCCCCEECC----CEeeecCcccHHHH
Confidence 478899865332 34689999776542 56877744444443
No 192
>PLN02248 cellulose synthase-like protein
Probab=21.62 E-value=76 Score=33.70 Aligned_cols=32 Identities=22% Similarity=0.742 Sum_probs=27.2
Q ss_pred CCCCcccHhHHHHhhccCCCCccccccccccC
Q 026563 155 DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 186 (237)
Q Consensus 155 ~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~ 186 (237)
.|++..|++|...-......||-|+.+.+..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 57888999999998888999999999886433
No 193
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=21.31 E-value=29 Score=31.93 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=9.9
Q ss_pred CCCcceeeccccC
Q 026563 137 REEECGICLEICC 149 (237)
Q Consensus 137 ~~~~C~IC~~~~~ 149 (237)
.++.|++|-+..+
T Consensus 14 l~ElCPVCGDkVS 26 (475)
T KOG4218|consen 14 LGELCPVCGDKVS 26 (475)
T ss_pred cccccccccCccc
Confidence 4567999988765
No 194
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.08 E-value=52 Score=22.35 Aligned_cols=13 Identities=23% Similarity=0.933 Sum_probs=10.7
Q ss_pred cCCCCcccccccc
Q 026563 171 RSQSCPFCRDSLR 183 (237)
Q Consensus 171 ~~~~CP~CR~~~~ 183 (237)
....||+|..+..
T Consensus 38 ~~p~CPlC~s~M~ 50 (59)
T PF14169_consen 38 EEPVCPLCKSPMV 50 (59)
T ss_pred CCccCCCcCCccc
Confidence 4689999988875
No 195
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=20.47 E-value=59 Score=20.79 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=22.2
Q ss_pred cceeeccccCcceecCCCCcccHhHHHHhh
Q 026563 140 ECGICLEICCKIVLPDCNHSMCMRCYRNWR 169 (237)
Q Consensus 140 ~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~ 169 (237)
.|.||-....+.+.. .|+-.|.+|=.+..
T Consensus 1 ~CiiC~~~~~~GI~I-~~~fIC~~CE~~iv 29 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKFICSDCEKEIV 29 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeEehHHHHHHhc
Confidence 388998888887766 78888888876643
No 196
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=20.42 E-value=83 Score=28.14 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=31.7
Q ss_pred CCccccccccccCCCCccccCCcchhhhhhhhhHHHHHHHHHhhccCCCCCCCcceeccc
Q 026563 174 SCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYD 233 (237)
Q Consensus 174 ~CP~CR~~~~~~~~~~~~~~~~~~ei~d~~~~~~e~l~~l~~~i~~lp~~~p~~~~~~~~ 233 (237)
.|+.||.......+.-.|+.+.. ..+..+.++.+...+..-|..-+..++.+.+
T Consensus 59 ~C~~C~~i~~~~HPD~~~i~p~~------~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ 112 (290)
T PRK07276 59 HCRSCRLIEQGEFSDVTVIEPQG------QVIKTDTIRELVKNFSQSGYEGKQQVFIIKD 112 (290)
T ss_pred CCHHHHHHhcCCCCCeeeecCCC------CcCCHHHHHHHHHHHhhCcccCCcEEEEeeh
Confidence 35555554444445444554421 2366778888888888777766665555543
No 197
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=20.39 E-value=15 Score=34.65 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=19.6
Q ss_pred cceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 140 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 140 ~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.|..|-+.+.+.++--||-.||-.| ++|-+|...+.
T Consensus 336 kC~~Cg~~I~d~iLrA~GkayHp~C--------F~Cv~C~r~ld 371 (468)
T KOG1701|consen 336 KCNKCGEPIMDRILRALGKAYHPGC--------FTCVVCARCLD 371 (468)
T ss_pred HHhhhhhHHHHHHHHhcccccCCCc--------eEEEEeccccC
Confidence 4556666555555555665555554 45555544443
No 198
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=20.15 E-value=48 Score=29.49 Aligned_cols=48 Identities=21% Similarity=0.675 Sum_probs=32.2
Q ss_pred CCCCcceeeccccCcc---------eecCCCCcccHhHH-HHhhc----------cCCCCcccccccc
Q 026563 136 EREEECGICLEICCKI---------VLPDCNHSMCMRCY-RNWRA----------RSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~---------v~~~CgH~FC~~Ci-~~w~~----------~~~~CP~CR~~~~ 183 (237)
.....|.+|-..+... -.++|.-.+|.+=. ++|+- +-..||.|++.+-
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFA 226 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFA 226 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhc
Confidence 4567899998877631 22466666666544 56865 3479999988774
Done!