Query 026563
Match_columns 237
No_of_seqs 297 out of 1873
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:34:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.5 1.9E-14 6.4E-19 100.0 2.9 56 135-190 7-69 (71)
2 2djb_A Polycomb group ring fin 99.4 6.1E-14 2.1E-18 98.2 4.2 55 134-188 11-66 (72)
3 4ayc_A E3 ubiquitin-protein li 99.4 8.4E-14 2.9E-18 109.6 4.2 48 137-184 52-99 (138)
4 1t1h_A Gspef-atpub14, armadill 99.4 8.1E-14 2.8E-18 98.8 3.7 50 135-184 5-55 (78)
5 2egp_A Tripartite motif-contai 99.4 9.2E-14 3.1E-18 98.5 3.2 53 134-186 8-67 (79)
6 2xeu_A Ring finger protein 4; 99.4 5.6E-14 1.9E-18 95.5 1.7 51 137-187 2-59 (64)
7 2d8t_A Dactylidin, ring finger 99.4 1.3E-13 4.5E-18 96.2 3.6 50 135-184 12-61 (71)
8 2ecy_A TNF receptor-associated 99.4 1.8E-13 6.3E-18 94.0 4.2 51 134-184 11-62 (66)
9 2ysl_A Tripartite motif-contai 99.4 2.4E-13 8.3E-18 94.9 4.9 52 134-185 16-70 (73)
10 2yur_A Retinoblastoma-binding 99.4 2.2E-13 7.7E-18 95.9 4.3 50 134-183 11-63 (74)
11 2csy_A Zinc finger protein 183 99.4 1.9E-13 6.4E-18 97.8 3.9 49 135-183 12-60 (81)
12 2ea6_A Ring finger protein 4; 99.4 1E-13 3.5E-18 95.5 2.4 51 134-184 11-68 (69)
13 2kiz_A E3 ubiquitin-protein li 99.4 3.3E-13 1.1E-17 93.4 4.8 53 135-187 11-66 (69)
14 1iym_A EL5; ring-H2 finger, ub 99.4 2.5E-13 8.5E-18 89.8 3.6 48 136-183 3-54 (55)
15 3lrq_A E3 ubiquitin-protein li 99.4 5.3E-14 1.8E-18 104.9 -0.1 50 136-185 20-71 (100)
16 2ecn_A Ring finger protein 141 99.4 2.5E-13 8.5E-18 94.3 3.2 50 135-185 12-61 (70)
17 2ecw_A Tripartite motif-contai 99.4 4.7E-13 1.6E-17 95.7 4.6 52 134-185 15-72 (85)
18 2ckl_A Polycomb group ring fin 99.4 1.6E-13 5.5E-18 103.4 2.1 52 134-185 11-63 (108)
19 2ct2_A Tripartite motif protei 99.4 4.5E-13 1.6E-17 96.7 4.4 53 133-185 10-69 (88)
20 2ecv_A Tripartite motif-contai 99.3 5.5E-13 1.9E-17 95.3 4.6 55 134-188 15-75 (85)
21 2ect_A Ring finger protein 126 99.3 5E-13 1.7E-17 94.7 3.7 54 134-187 11-67 (78)
22 2ecm_A Ring finger and CHY zin 99.3 4.1E-13 1.4E-17 88.6 2.9 47 137-183 4-54 (55)
23 2kr4_A Ubiquitin conjugation f 99.3 6.1E-13 2.1E-17 96.4 3.9 51 134-184 10-60 (85)
24 2l0b_A E3 ubiquitin-protein li 99.3 6.8E-13 2.3E-17 97.2 4.2 49 135-183 37-88 (91)
25 1chc_A Equine herpes virus-1 r 99.3 6.3E-13 2.2E-17 91.6 3.5 48 137-184 4-52 (68)
26 3ztg_A E3 ubiquitin-protein li 99.3 7.1E-13 2.4E-17 96.8 4.0 50 134-183 9-61 (92)
27 1x4j_A Ring finger protein 38; 99.3 4.7E-13 1.6E-17 94.2 2.3 48 136-183 21-71 (75)
28 2kre_A Ubiquitin conjugation f 99.3 1.2E-12 4.1E-17 97.8 4.3 51 134-184 25-75 (100)
29 2ep4_A Ring finger protein 24; 99.3 1.1E-12 3.7E-17 92.0 3.6 51 134-184 11-64 (74)
30 1g25_A CDK-activating kinase a 99.3 8.3E-13 2.8E-17 90.4 3.0 51 138-188 3-59 (65)
31 3fl2_A E3 ubiquitin-protein li 99.3 5E-13 1.7E-17 103.1 1.9 49 136-184 50-99 (124)
32 2ysj_A Tripartite motif-contai 99.3 1.4E-12 4.9E-17 88.6 4.0 45 134-178 16-63 (63)
33 2y43_A E3 ubiquitin-protein li 99.3 7.6E-13 2.6E-17 98.1 2.5 48 137-184 21-69 (99)
34 1v87_A Deltex protein 2; ring- 99.3 1.8E-12 6.3E-17 98.2 4.0 48 137-184 24-94 (114)
35 2ecl_A Ring-box protein 2; RNF 99.3 1.3E-12 4.4E-17 93.7 3.0 48 137-184 14-76 (81)
36 1wgm_A Ubiquitin conjugation f 99.3 2.6E-12 8.8E-17 95.7 4.6 51 134-184 18-69 (98)
37 2ecj_A Tripartite motif-contai 99.3 3.9E-12 1.3E-16 84.7 4.9 45 134-178 11-58 (58)
38 1jm7_A BRCA1, breast cancer ty 99.3 4.2E-12 1.4E-16 95.7 5.7 51 137-187 20-73 (112)
39 4ap4_A E3 ubiquitin ligase RNF 99.3 1.7E-12 6E-17 100.1 2.8 58 136-193 5-69 (133)
40 3l11_A E3 ubiquitin-protein li 99.2 1.1E-12 3.8E-17 99.8 0.4 50 135-184 12-62 (115)
41 1z6u_A NP95-like ring finger p 99.2 2E-12 6.8E-17 103.4 1.5 51 135-185 75-126 (150)
42 3hct_A TNF receptor-associated 99.2 4.4E-12 1.5E-16 97.0 2.7 51 134-184 14-65 (118)
43 1e4u_A Transcriptional repress 99.2 1.7E-11 5.9E-16 87.4 5.4 52 135-186 8-64 (78)
44 2ckl_B Ubiquitin ligase protei 99.2 5E-12 1.7E-16 102.1 1.9 49 135-183 51-101 (165)
45 1rmd_A RAG1; V(D)J recombinati 99.2 4.8E-12 1.6E-16 96.3 1.7 49 136-184 21-70 (116)
46 1jm7_B BARD1, BRCA1-associated 99.2 4.8E-12 1.6E-16 96.7 1.4 46 137-184 21-67 (117)
47 1bor_A Transcription factor PM 99.2 8.7E-12 3E-16 83.2 2.4 46 136-184 4-49 (56)
48 3dpl_R Ring-box protein 1; ubi 99.2 1.4E-11 4.9E-16 92.9 3.7 47 137-183 36-100 (106)
49 3knv_A TNF receptor-associated 99.1 8.5E-12 2.9E-16 98.7 2.0 50 134-183 27-77 (141)
50 2c2l_A CHIP, carboxy terminus 99.1 3.5E-11 1.2E-15 103.7 4.9 52 133-184 203-255 (281)
51 4ap4_A E3 ubiquitin ligase RNF 99.1 9.9E-12 3.4E-16 95.8 1.3 53 136-188 70-129 (133)
52 2vje_A E3 ubiquitin-protein li 99.1 1.3E-11 4.5E-16 84.6 1.7 49 136-184 6-57 (64)
53 4ic3_A E3 ubiquitin-protein li 99.1 1.9E-11 6.6E-16 86.0 1.5 44 137-184 23-67 (74)
54 2vje_B MDM4 protein; proto-onc 99.1 2.9E-11 9.9E-16 82.6 1.7 48 137-184 6-56 (63)
55 2yu4_A E3 SUMO-protein ligase 99.1 4.1E-11 1.4E-15 88.2 2.1 48 136-183 5-62 (94)
56 2y1n_A E3 ubiquitin-protein li 99.1 6.8E-11 2.3E-15 107.5 3.9 49 137-185 331-380 (389)
57 2f42_A STIP1 homology and U-bo 99.0 1.1E-10 3.6E-15 95.9 3.0 51 134-184 102-153 (179)
58 3hcs_A TNF receptor-associated 99.0 1.1E-10 3.7E-15 94.6 2.7 51 134-184 14-65 (170)
59 2ecg_A Baculoviral IAP repeat- 99.0 1.1E-10 3.6E-15 82.3 1.4 43 138-184 25-68 (75)
60 4a0k_B E3 ubiquitin-protein li 99.0 6.4E-11 2.2E-15 90.8 0.2 47 137-183 47-111 (117)
61 2ea5_A Cell growth regulator w 98.9 9.2E-10 3.2E-14 76.3 3.5 45 136-184 13-58 (68)
62 2yho_A E3 ubiquitin-protein li 98.9 3.8E-10 1.3E-14 80.5 1.1 44 138-185 18-62 (79)
63 2d8s_A Cellular modulator of i 98.9 1.1E-09 3.7E-14 78.4 3.3 48 136-183 13-69 (80)
64 3htk_C E3 SUMO-protein ligase 98.8 9.3E-10 3.2E-14 94.9 3.1 52 134-185 177-233 (267)
65 2ct0_A Non-SMC element 1 homol 98.8 4.7E-09 1.6E-13 74.0 4.9 48 137-184 14-64 (74)
66 2bay_A PRE-mRNA splicing facto 98.7 2.3E-09 7.9E-14 72.7 1.5 50 138-187 3-53 (61)
67 3t6p_A Baculoviral IAP repeat- 98.7 1.9E-09 6.6E-14 96.9 0.4 45 136-184 293-338 (345)
68 1wim_A KIAA0161 protein; ring 98.6 1.3E-08 4.6E-13 74.4 2.2 45 137-181 4-61 (94)
69 3k1l_B Fancl; UBC, ring, RWD, 98.4 6.2E-08 2.1E-12 86.4 1.2 48 136-183 306-372 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.4 2.8E-07 9.7E-12 62.1 3.7 48 136-183 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 98.2 5.1E-07 1.7E-11 66.5 2.6 47 140-186 3-51 (101)
72 3nw0_A Non-structural maintena 97.4 8.4E-05 2.9E-09 63.3 4.1 47 138-184 180-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.0016 5.6E-08 47.4 1.7 32 137-168 2-36 (101)
74 2ko5_A Ring finger protein Z; 94.9 0.012 4.1E-07 42.6 2.2 47 137-185 27-74 (99)
75 3m62_A Ubiquitin conjugation f 93.1 0.06 2.1E-06 53.9 3.9 52 134-185 887-939 (968)
76 2cs3_A Protein C14ORF4, MY039 85.9 0.59 2E-05 32.8 3.0 43 136-178 13-64 (93)
77 2lri_C Autoimmune regulator; Z 83.7 0.95 3.3E-05 30.3 3.3 46 137-182 11-60 (66)
78 1weo_A Cellulose synthase, cat 78.0 5.8 0.0002 28.2 5.8 48 137-184 15-70 (93)
79 2jmo_A Parkin; IBR, E3 ligase, 76.0 0.37 1.3E-05 33.5 -0.8 20 155-176 55-74 (80)
80 3u5n_A E3 ubiquitin-protein li 75.0 1.3 4.5E-05 36.1 2.1 47 136-182 5-55 (207)
81 1z60_A TFIIH basal transcripti 73.8 2.6 9E-05 27.6 2.9 40 139-178 16-58 (59)
82 1y02_A CARP2, FYVE-ring finger 73.5 0.14 4.8E-06 38.8 -3.9 47 136-182 17-67 (120)
83 3o36_A Transcription intermedi 73.2 2.3 7.8E-05 33.9 3.1 46 137-182 3-52 (184)
84 2l5u_A Chromodomain-helicase-D 71.0 2.8 9.7E-05 27.3 2.6 47 134-180 7-57 (61)
85 1mm2_A MI2-beta; PHD, zinc fin 67.9 1.7 5.9E-05 28.4 1.0 46 136-181 7-56 (61)
86 2ro1_A Transcription intermedi 63.2 5 0.00017 32.3 3.1 45 138-182 2-50 (189)
87 2lbm_A Transcriptional regulat 62.6 14 0.00046 28.5 5.4 46 135-180 60-116 (142)
88 3ql9_A Transcriptional regulat 60.6 12 0.00042 28.3 4.7 46 135-180 54-110 (129)
89 1joc_A EEA1, early endosomal a 60.1 3.6 0.00012 30.9 1.7 31 137-167 68-102 (125)
90 1z2q_A LM5-1; membrane protein 58.9 4.6 0.00016 28.1 1.9 33 136-168 19-55 (84)
91 3t7l_A Zinc finger FYVE domain 58.5 4.2 0.00014 28.7 1.7 32 137-168 19-54 (90)
92 2pv0_B DNA (cytosine-5)-methyl 58.5 14 0.00047 33.2 5.4 61 114-180 75-147 (386)
93 1wd2_A Ariadne-1 protein homol 57.7 1.8 6.1E-05 28.4 -0.4 32 139-170 7-46 (60)
94 2yql_A PHD finger protein 21A; 57.5 2 6.7E-05 27.5 -0.2 45 136-180 7-55 (56)
95 2yw8_A RUN and FYVE domain-con 57.3 4.6 0.00016 27.9 1.7 31 137-167 18-52 (82)
96 1wil_A KIAA1045 protein; ring 56.3 13 0.00043 26.2 3.8 34 135-168 12-47 (89)
97 1vfy_A Phosphatidylinositol-3- 56.1 5.8 0.0002 26.7 2.0 30 138-167 11-44 (73)
98 1x4u_A Zinc finger, FYVE domai 55.6 5.5 0.00019 27.6 1.8 32 136-167 12-47 (84)
99 1dvp_A HRS, hepatocyte growth 54.1 4.8 0.00016 33.0 1.5 33 135-167 158-194 (220)
100 3i2d_A E3 SUMO-protein ligase 53.9 8.8 0.0003 34.3 3.3 47 137-183 248-299 (371)
101 3zyq_A Hepatocyte growth facto 53.5 5.1 0.00018 33.1 1.7 34 135-168 161-198 (226)
102 3fyb_A Protein of unknown func 52.8 5 0.00017 29.1 1.2 12 159-170 41-52 (104)
103 2o35_A Hypothetical protein DU 52.7 5 0.00017 29.1 1.2 12 159-170 42-53 (105)
104 2gmg_A Hypothetical protein PF 52.1 4.8 0.00016 29.5 1.1 27 151-182 68-94 (105)
105 4fo9_A E3 SUMO-protein ligase 50.9 11 0.00037 33.6 3.4 47 137-183 214-265 (360)
106 2fiy_A Protein FDHE homolog; F 50.9 2 6.7E-05 37.6 -1.4 46 136-181 180-231 (309)
107 1zbd_B Rabphilin-3A; G protein 50.7 7 0.00024 29.8 1.9 31 136-166 53-88 (134)
108 3mpx_A FYVE, rhogef and PH dom 50.6 3.3 0.00011 37.1 0.0 45 137-181 374-429 (434)
109 2l43_A N-teminal domain from h 47.2 8.9 0.0003 26.9 1.9 49 135-183 22-77 (88)
110 1wfk_A Zinc finger, FYVE domai 46.2 7.6 0.00026 27.3 1.4 31 137-167 8-42 (88)
111 1m3v_A FLIN4, fusion of the LI 46.2 10 0.00035 27.8 2.2 46 139-184 33-81 (122)
112 1xwh_A Autoimmune regulator; P 45.8 4.5 0.00015 26.7 0.1 46 136-181 6-55 (66)
113 3a1b_A DNA (cytosine-5)-methyl 45.8 20 0.00068 28.1 3.8 45 136-180 77-133 (159)
114 2ct7_A Ring finger protein 31; 44.6 2.2 7.4E-05 29.9 -1.8 15 154-168 47-61 (86)
115 2zet_C Melanophilin; complex, 44.2 8 0.00027 30.2 1.3 44 137-181 67-117 (153)
116 2ysm_A Myeloid/lymphoid or mix 44.0 8.1 0.00028 28.0 1.3 43 136-178 5-54 (111)
117 1fp0_A KAP-1 corepressor; PHD 43.2 11 0.00037 26.6 1.8 47 135-181 22-72 (88)
118 2puy_A PHD finger protein 21A; 42.8 4.8 0.00016 26.0 -0.1 46 137-182 4-53 (60)
119 2d8v_A Zinc finger FYVE domain 42.6 10 0.00035 25.4 1.5 33 136-169 6-39 (67)
120 1x62_A C-terminal LIM domain p 41.4 16 0.00054 24.4 2.4 39 137-183 14-52 (79)
121 2k16_A Transcription initiatio 40.0 7.4 0.00025 26.1 0.5 47 137-183 17-70 (75)
122 1wyh_A SLIM 2, skeletal muscle 39.4 22 0.00075 22.9 2.8 38 138-183 5-44 (72)
123 1wig_A KIAA1808 protein; LIM d 38.6 18 0.00063 23.8 2.3 37 139-183 6-42 (73)
124 2yt5_A Metal-response element- 38.0 7.3 0.00025 25.4 0.2 47 136-182 4-62 (66)
125 2dar_A PDZ and LIM domain prot 37.8 17 0.00058 24.9 2.1 39 137-183 24-62 (90)
126 1f62_A Transcription factor WS 37.0 16 0.00054 22.5 1.6 41 140-180 2-49 (51)
127 4g9i_A Hydrogenase maturation 36.1 12 0.00042 36.6 1.5 46 138-183 106-189 (772)
128 2d8x_A Protein pinch; LIM doma 35.9 18 0.00063 23.3 2.0 39 138-184 5-43 (70)
129 2cor_A Pinch protein; LIM doma 35.8 29 0.00099 23.1 3.0 38 138-183 15-52 (79)
130 1x64_A Alpha-actinin-2 associa 35.7 22 0.00075 24.2 2.4 39 137-183 24-62 (89)
131 1x6a_A LIMK-2, LIM domain kina 34.5 19 0.00065 23.9 1.9 37 139-183 16-52 (81)
132 2xjy_A Rhombotin-2; oncoprotei 34.3 17 0.00057 26.6 1.7 46 138-183 29-77 (131)
133 3ttc_A HYPF, transcriptional r 34.3 12 0.00041 36.0 1.1 23 160-182 69-99 (657)
134 1nyp_A Pinch protein; LIM doma 34.0 17 0.00057 23.2 1.4 38 138-183 5-42 (66)
135 2d8z_A Four and A half LIM dom 33.7 21 0.00073 22.9 2.0 37 139-183 6-42 (70)
136 3vth_A Hydrogenase maturation 31.8 14 0.00048 36.1 1.1 45 139-183 112-194 (761)
137 1rut_X Flinc4, fusion protein 31.6 12 0.00041 29.6 0.5 45 139-183 33-80 (188)
138 1x4l_A Skeletal muscle LIM-pro 31.3 23 0.00077 23.0 1.8 38 138-183 5-46 (72)
139 3v43_A Histone acetyltransfera 31.1 51 0.0017 23.7 3.9 30 137-166 4-42 (112)
140 2cur_A Skeletal muscle LIM-pro 28.9 20 0.0007 23.0 1.2 37 139-183 6-42 (69)
141 1x63_A Skeletal muscle LIM-pro 28.6 28 0.00096 23.1 2.0 37 139-183 16-54 (82)
142 2e6r_A Jumonji/ARID domain-con 28.6 11 0.00037 26.7 -0.3 49 133-181 11-66 (92)
143 2dlo_A Thyroid receptor-intera 28.4 19 0.00066 24.0 1.1 38 138-183 15-52 (81)
144 1we9_A PHD finger family prote 27.5 18 0.00062 23.3 0.8 46 136-181 4-58 (64)
145 1x68_A FHL5 protein; four-and- 27.5 23 0.00079 23.3 1.3 37 139-183 6-46 (76)
146 1v6g_A Actin binding LIM prote 27.1 21 0.00071 23.8 1.0 37 139-183 16-52 (81)
147 3mjh_B Early endosome antigen 26.5 13 0.00046 21.4 -0.1 11 173-183 6-16 (34)
148 1gp8_A Protein (scaffolding pr 25.2 34 0.0011 20.3 1.5 14 4-17 5-18 (40)
149 2xqn_T Testin, TESS; metal-bin 25.1 37 0.0013 24.5 2.2 44 138-183 30-74 (126)
150 2cu8_A Cysteine-rich protein 2 25.1 24 0.00081 23.2 1.0 38 138-183 9-47 (76)
151 2cuq_A Four and A half LIM dom 25.0 31 0.001 22.8 1.6 37 139-183 16-52 (80)
152 2lcq_A Putative toxin VAPC6; P 24.7 21 0.00071 27.6 0.7 26 154-185 136-161 (165)
153 1x4k_A Skeletal muscle LIM-pro 24.4 27 0.00094 22.4 1.2 37 139-183 6-44 (72)
154 2jrp_A Putative cytoplasmic pr 24.4 5.7 0.0002 27.7 -2.3 40 139-183 3-42 (81)
155 2ku3_A Bromodomain-containing 24.1 27 0.00091 23.4 1.1 46 135-180 13-65 (71)
156 1wen_A Inhibitor of growth fam 24.0 51 0.0017 21.9 2.5 47 136-183 14-67 (71)
157 2lv9_A Histone-lysine N-methyl 23.7 19 0.00066 25.6 0.3 42 138-180 28-75 (98)
158 2jne_A Hypothetical protein YF 23.5 5.7 0.00019 28.7 -2.5 42 138-184 32-73 (101)
159 3c5k_A HD6, histone deacetylas 23.4 37 0.0013 24.7 1.9 25 138-162 24-48 (109)
160 2rgt_A Fusion of LIM/homeobox 22.6 60 0.0021 24.8 3.1 44 138-183 33-76 (169)
161 1avy_A Fibritin, gpwac M; bact 22.3 58 0.002 21.9 2.4 14 4-17 26-39 (74)
162 1x3h_A Leupaxin; paxillin fami 22.3 28 0.00097 22.9 1.0 38 139-184 16-53 (80)
163 2ehe_A Four and A half LIM dom 22.2 45 0.0015 22.1 2.0 37 139-183 16-54 (82)
164 2l3k_A Rhombotin-2, linker, LI 21.7 44 0.0015 24.2 2.0 41 139-181 37-79 (123)
165 1wev_A Riken cDNA 1110020M19; 21.5 7.3 0.00025 27.3 -2.3 47 137-183 15-74 (88)
166 2kdx_A HYPA, hydrogenase/ureas 21.0 35 0.0012 24.9 1.3 29 154-188 77-106 (119)
167 1iml_A CRIP, cysteine rich int 20.7 31 0.001 22.6 0.9 40 139-180 28-69 (76)
168 2l4z_A DNA endonuclease RBBP8, 20.7 33 0.0011 25.2 1.1 38 138-183 61-99 (123)
169 2dj7_A Actin-binding LIM prote 20.5 47 0.0016 22.2 1.8 40 136-183 13-53 (80)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.46 E-value=1.9e-14 Score=100.05 Aligned_cols=56 Identities=25% Similarity=0.662 Sum_probs=48.6
Q ss_pred CCCCCcceeeccccCcc-------eecCCCCcccHhHHHHhhccCCCCccccccccccCCCCc
Q 026563 135 IEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDL 190 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~ 190 (237)
.+++..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++...+...+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence 34678999999999877 889999999999999999999999999999986555444
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.1e-14 Score=98.15 Aligned_cols=55 Identities=20% Similarity=0.430 Sum_probs=48.0
Q ss_pred cCCCCCcceeeccccCcceec-CCCCcccHhHHHHhhccCCCCccccccccccCCC
Q 026563 134 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSG 188 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~ 188 (237)
..+++..|+||++.+.+++.+ +|||.||..||.+|+..+..||+||..+...++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 345678999999999999875 9999999999999999899999999999855443
No 3
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.42 E-value=8.4e-14 Score=109.62 Aligned_cols=48 Identities=35% Similarity=0.872 Sum_probs=44.9
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
++..|+||++.+.+|+.++|||.||..||..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 457899999999999999999999999999999999999999999864
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.41 E-value=8.1e-14 Score=98.78 Aligned_cols=50 Identities=18% Similarity=0.370 Sum_probs=46.0
Q ss_pred CCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563 135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 184 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~ 184 (237)
..++..|+||++.+.+|+.++|||.||..||.+|+.. ..+||.||.++..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4567899999999999999999999999999999986 8899999999874
No 5
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=9.2e-14 Score=98.48 Aligned_cols=53 Identities=32% Similarity=0.676 Sum_probs=46.8
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-------CCCCccccccccccC
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-------SQSCPFCRDSLRRVN 186 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-------~~~CP~CR~~~~~~~ 186 (237)
..+++..|+||++.+.+++.++|||.||..|+.+|+.. ...||.||..+....
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 34567899999999999999999999999999999985 689999999987543
No 6
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.39 E-value=5.6e-14 Score=95.45 Aligned_cols=51 Identities=27% Similarity=0.727 Sum_probs=45.0
Q ss_pred CCCcceeeccccCcc-------eecCCCCcccHhHHHHhhccCCCCccccccccccCC
Q 026563 137 REEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 187 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~ 187 (237)
++..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 357899999999876 788999999999999999999999999999875443
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=96.19 Aligned_cols=50 Identities=28% Similarity=0.692 Sum_probs=45.8
Q ss_pred CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
...+..|+||++.+.+++.++|||.||..|+.+|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34568899999999999999999999999999999988999999999874
No 8
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=94.03 Aligned_cols=51 Identities=24% Similarity=0.663 Sum_probs=45.5
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 184 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~ 184 (237)
...++..|+||++.+.+++.++|||.||..|+.+|+. ....||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3456789999999999999999999999999999994 67899999999874
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.4e-13 Score=94.92 Aligned_cols=52 Identities=35% Similarity=0.804 Sum_probs=46.0
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc---cCCCCcccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLRRV 185 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~~~~~ 185 (237)
..+++..|+||++.+.+++.++|||.||..|+.+|+. ....||+||..+...
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3456789999999999999999999999999999996 567999999998743
No 10
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.38 E-value=2.2e-13 Score=95.88 Aligned_cols=50 Identities=32% Similarity=0.607 Sum_probs=44.4
Q ss_pred cCCCCCcceeeccccCcceecC-CCCcccHhHHHHhhccC--CCCcccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRARS--QSCPFCRDSLR 183 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~-CgH~FC~~Ci~~w~~~~--~~CP~CR~~~~ 183 (237)
...++..|+||++.+.+|+.++ |||.||..||.+|+..+ ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4456789999999999999999 99999999999999854 79999999754
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=97.75 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=45.5
Q ss_pred CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.+....|+||++.+.++++++|||.||..|+.+|+.....||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3456899999999999999999999999999999999999999999986
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1e-13 Score=95.51 Aligned_cols=51 Identities=27% Similarity=0.741 Sum_probs=45.3
Q ss_pred cCCCCCcceeeccccCcc-------eecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 134 DIEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
....+..|+||++.+.++ +.++|||.||..|+.+|+..+..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678999999999876 889999999999999999999999999998763
No 13
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=3.3e-13 Score=93.39 Aligned_cols=53 Identities=28% Similarity=0.638 Sum_probs=44.9
Q ss_pred CCCCCcceeeccccC---cceecCCCCcccHhHHHHhhccCCCCccccccccccCC
Q 026563 135 IEREEECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 187 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~---~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~ 187 (237)
.+.+..|+||++.+. .++.++|||.||..|+.+|+..+.+||+||..+....+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 345678999999885 35778999999999999999988999999999875443
No 14
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.37 E-value=2.5e-13 Score=89.79 Aligned_cols=48 Identities=25% Similarity=0.681 Sum_probs=41.8
Q ss_pred CCCCcceeeccccCc---ceecC-CCCcccHhHHHHhhccCCCCcccccccc
Q 026563 136 EREEECGICLEICCK---IVLPD-CNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~---~v~~~-CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
+++.+|+||++.+.+ ++.++ |||.||..|+.+|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456789999999886 55555 9999999999999999999999998764
No 15
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.36 E-value=5.3e-14 Score=104.91 Aligned_cols=50 Identities=32% Similarity=0.770 Sum_probs=45.0
Q ss_pred CCCCcceeeccccCccee-cCCCCcccHhHHHHhhccC-CCCcccccccccc
Q 026563 136 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRV 185 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~~~~~ 185 (237)
+++..|+||++.+.+|+. ++|||.||..||.+|+... ..||.||.++...
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 346789999999999999 9999999999999999976 7999999998643
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.5e-13 Score=94.29 Aligned_cols=50 Identities=34% Similarity=0.932 Sum_probs=45.3
Q ss_pred CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccccc
Q 026563 135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 185 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~ 185 (237)
...+..|+||++.+.+ +.++|||.||..|+.+|+.....||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 4567899999999999 8899999999999999999999999999998743
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=4.7e-13 Score=95.66 Aligned_cols=52 Identities=37% Similarity=0.657 Sum_probs=46.4
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc------CCCCcccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRV 185 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~------~~~CP~CR~~~~~~ 185 (237)
....+..|+||++.+.+++.++|||.||..|+..|+.. ...||.||..+...
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34567899999999999999999999999999999886 78999999998743
No 18
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.35 E-value=1.6e-13 Score=103.38 Aligned_cols=52 Identities=21% Similarity=0.570 Sum_probs=46.9
Q ss_pred cCCCCCcceeeccccCcceec-CCCCcccHhHHHHhhccCCCCcccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 185 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~ 185 (237)
....+..|+||++.+.+++.+ +|||.||..|+..|+..+..||.||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 345678999999999999886 9999999999999999899999999998754
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.5e-13 Score=96.68 Aligned_cols=53 Identities=32% Similarity=0.685 Sum_probs=46.3
Q ss_pred ccCCCCCcceeeccccCc----ceecCCCCcccHhHHHHhhccC---CCCcccccccccc
Q 026563 133 IDIEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRV 185 (237)
Q Consensus 133 ~~~~~~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~---~~CP~CR~~~~~~ 185 (237)
...+++..|+||++.+.+ ++.++|||.||..|+.+|+... ..||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345667899999999998 8999999999999999999865 8999999988643
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.5e-13 Score=95.30 Aligned_cols=55 Identities=35% Similarity=0.735 Sum_probs=47.7
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc------CCCCccccccccccCCC
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSG 188 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~------~~~CP~CR~~~~~~~~~ 188 (237)
....+..|+||++.+.+++.++|||.||..|+..|+.. ...||.||..+......
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 34567899999999999999999999999999999876 88999999998854333
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.34 E-value=5e-13 Score=94.67 Aligned_cols=54 Identities=31% Similarity=0.598 Sum_probs=45.5
Q ss_pred cCCCCCcceeeccccCcc---eecCCCCcccHhHHHHhhccCCCCccccccccccCC
Q 026563 134 DIEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 187 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~ 187 (237)
....+..|+||++.+..+ ..++|||.||..|+.+|+..+.+||+||..+...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 345678999999998754 557899999999999999988999999999875443
No 22
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.33 E-value=4.1e-13 Score=88.62 Aligned_cols=47 Identities=26% Similarity=0.592 Sum_probs=42.1
Q ss_pred CCCcceeeccccCc----ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 137 REEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.+..|+||++.+.+ ++.++|||.||..|+.+|+....+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46789999999865 678999999999999999998899999998864
No 23
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.33 E-value=6.1e-13 Score=96.44 Aligned_cols=51 Identities=18% Similarity=0.042 Sum_probs=47.0
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
....++.|+||++.+.+||.++|||+||+.||.+|+....+||+||.++..
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 345689999999999999999999999999999999988999999999874
No 24
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.33 E-value=6.8e-13 Score=97.18 Aligned_cols=49 Identities=29% Similarity=0.621 Sum_probs=43.6
Q ss_pred CCCCCcceeeccccCc---ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 135 IEREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.+.+..|+||++.+.. ++.++|||.||..||.+|+..+.+||+||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3466889999999876 677889999999999999999999999999875
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.32 E-value=6.3e-13 Score=91.60 Aligned_cols=48 Identities=29% Similarity=0.783 Sum_probs=43.6
Q ss_pred CCCcceeeccccCcc-eecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 137 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
.+..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 457899999999885 789999999999999999989999999999873
No 26
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.32 E-value=7.1e-13 Score=96.79 Aligned_cols=50 Identities=30% Similarity=0.594 Sum_probs=44.3
Q ss_pred cCCCCCcceeeccccCcceecC-CCCcccHhHHHHhhcc--CCCCcccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRAR--SQSCPFCRDSLR 183 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~-CgH~FC~~Ci~~w~~~--~~~CP~CR~~~~ 183 (237)
...++..|+||++.+.+|+.++ |||.||..||.+|+.. ...||.||.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4567799999999999999999 9999999999999873 469999999873
No 27
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=4.7e-13 Score=94.23 Aligned_cols=48 Identities=23% Similarity=0.639 Sum_probs=43.0
Q ss_pred CCCCcceeeccccCcc---eecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 136 EREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
+.+..|+||++.+..+ +.++|||.||..|+.+|+..+.+||+||..+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4567899999998865 66889999999999999999999999999886
No 28
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.30 E-value=1.2e-12 Score=97.83 Aligned_cols=51 Identities=18% Similarity=0.055 Sum_probs=47.0
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
....++.|+||++.+.+||.++|||+||+.||.+|+....+||+||.++..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 345679999999999999999999999999999999988999999999874
No 29
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-12 Score=91.99 Aligned_cols=51 Identities=24% Similarity=0.636 Sum_probs=43.5
Q ss_pred cCCCCCcceeeccccCcc---eecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 134 DIEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+...+..|+||++.+..+ ..++|||.||..|+.+|+....+||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 345678999999998764 334899999999999999988899999999864
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=8.3e-13 Score=90.42 Aligned_cols=51 Identities=24% Similarity=0.554 Sum_probs=42.7
Q ss_pred CCcceeecc-ccCcc----eecCCCCcccHhHHHHhhc-cCCCCccccccccccCCC
Q 026563 138 EEECGICLE-ICCKI----VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVNSG 188 (237)
Q Consensus 138 ~~~C~IC~~-~~~~~----v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~~~~ 188 (237)
+..|+||++ .+.++ +.++|||.||..|+.+|+. ....||.||.++...+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 578999999 78776 4689999999999999965 567899999999755443
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.30 E-value=5e-13 Score=103.11 Aligned_cols=49 Identities=31% Similarity=0.651 Sum_probs=44.0
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCccccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 184 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~ 184 (237)
+.+..|+||++.+.+|+.++|||.||..|+..|+. ....||.||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45688999999999999999999999999999997 45599999999874
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=88.59 Aligned_cols=45 Identities=36% Similarity=0.841 Sum_probs=40.7
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc---cCCCCccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFC 178 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~C 178 (237)
..+++..|+||++.+.+++.++|||.||..|+.+|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4466789999999999999999999999999999997 56799998
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.29 E-value=7.6e-13 Score=98.08 Aligned_cols=48 Identities=27% Similarity=0.703 Sum_probs=44.3
Q ss_pred CCCcceeeccccCcceec-CCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 137 REEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
++..|+||++.+.+++.+ +|||.||..|+.+|+.....||.||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999999876 899999999999999989999999999874
No 34
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.27 E-value=1.8e-12 Score=98.23 Aligned_cols=48 Identities=29% Similarity=0.626 Sum_probs=41.1
Q ss_pred CCCcceeeccccCcce------------------ecCCCCcccHhHHHHhh-----ccCCCCccccccccc
Q 026563 137 REEECGICLEICCKIV------------------LPDCNHSMCMRCYRNWR-----ARSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v------------------~~~CgH~FC~~Ci~~w~-----~~~~~CP~CR~~~~~ 184 (237)
.+..|+||++.+.++. +++|||.||..||.+|+ ..+.+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999986543 78999999999999999 457899999998863
No 35
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.3e-12 Score=93.72 Aligned_cols=48 Identities=27% Similarity=0.702 Sum_probs=40.8
Q ss_pred CCCcceeeccccCc--------------c-eecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 137 REEECGICLEICCK--------------I-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~--------------~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
++..|+||++.+.+ + ++++|||.||..||.+|+..+.+||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45679999998864 3 445699999999999999999999999998763
No 36
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.27 E-value=2.6e-12 Score=95.65 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=46.9
Q ss_pred cCCCCCcceeeccccCcceecCCC-CcccHhHHHHhhccCCCCccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~Cg-H~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
...+++.|+||++.+.+||.++|| |.||+.||.+|+....+||+||.++..
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 345679999999999999999999 999999999999988999999999874
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.9e-12 Score=84.70 Aligned_cols=45 Identities=33% Similarity=0.959 Sum_probs=39.9
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhh---ccCCCCccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWR---ARSQSCPFC 178 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~---~~~~~CP~C 178 (237)
...++..|+||++.+.+++.++|||.||..|+.+|+ .....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999999999999999999999999999994 467899998
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=4.2e-12 Score=95.66 Aligned_cols=51 Identities=27% Similarity=0.709 Sum_probs=44.4
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhccC---CCCccccccccccCC
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRVNS 187 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~---~~CP~CR~~~~~~~~ 187 (237)
....|+||++.+.+++.++|||.||..|+.+|+... ..||.||.++.....
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 346899999999999999999999999999999854 489999999875443
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.25 E-value=1.7e-12 Score=100.07 Aligned_cols=58 Identities=26% Similarity=0.677 Sum_probs=49.7
Q ss_pred CCCCcceeeccccCcc-------eecCCCCcccHhHHHHhhccCCCCccccccccccCCCCcccc
Q 026563 136 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIY 193 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~~~ 193 (237)
.++..|+||++.+.++ +.++|||.||..||.+|+....+||+||..+.......++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence 3568999999999887 889999999999999999999999999999986555544443
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.23 E-value=1.1e-12 Score=99.78 Aligned_cols=50 Identities=38% Similarity=0.883 Sum_probs=44.9
Q ss_pred CCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563 135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 184 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~ 184 (237)
..++..|+||++.+.+|+.++|||.||..|+.+|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3456889999999999999999999999999999985 7899999999873
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.21 E-value=2e-12 Score=103.36 Aligned_cols=51 Identities=29% Similarity=0.637 Sum_probs=45.1
Q ss_pred CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccC-CCCcccccccccc
Q 026563 135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRV 185 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~~~~~ 185 (237)
...+..|+||++.+.+|+.++|||.||..||..|+... ..||+||..+...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34568999999999999999999999999999999854 4899999998743
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.20 E-value=4.4e-12 Score=97.04 Aligned_cols=51 Identities=27% Similarity=0.558 Sum_probs=45.4
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccC-CCCccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRR 184 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~~~~ 184 (237)
..+.+..|+||++.+.+|+.++|||.||..|+.+|+... ..||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 456678999999999999999999999999999999855 499999998863
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.19 E-value=1.7e-11 Score=87.43 Aligned_cols=52 Identities=27% Similarity=0.593 Sum_probs=42.0
Q ss_pred CCCCCcceeeccccC--cceecC--CCCcccHhHHHHhhc-cCCCCccccccccccC
Q 026563 135 IEREEECGICLEICC--KIVLPD--CNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN 186 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~--~~v~~~--CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~~ 186 (237)
.+++..|+||++.+. ++...+ |||.||..|+.+++. ....||.||.++...+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 456789999999885 344544 999999999999764 5789999999997543
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.17 E-value=5e-12 Score=102.12 Aligned_cols=49 Identities=29% Similarity=0.697 Sum_probs=43.9
Q ss_pred CCCCCcceeeccccCcceec-CCCCcccHhHHHHhhcc-CCCCcccccccc
Q 026563 135 IEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRAR-SQSCPFCRDSLR 183 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~ 183 (237)
...+..|+||++.+.+++.+ +|||.||..|+..|+.. ...||+||.++.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 34567999999999999876 99999999999999986 889999999985
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.17 E-value=4.8e-12 Score=96.35 Aligned_cols=49 Identities=27% Similarity=0.517 Sum_probs=44.6
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 184 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~ 184 (237)
.++..|+||++.+.+|+.++|||.||..|+.+|+.. ...||.||.++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 346789999999999999999999999999999985 7899999999874
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=4.8e-12 Score=96.71 Aligned_cols=46 Identities=24% Similarity=0.575 Sum_probs=42.3
Q ss_pred CCCcceeeccccCcceec-CCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 137 REEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
++..|+||++.+.+|+.+ +|||.||..||..|+. ..||.||.++..
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 468899999999999998 9999999999999987 899999999864
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=8.7e-12 Score=83.15 Aligned_cols=46 Identities=22% Similarity=0.464 Sum_probs=40.9
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
.++..|+||++.+.+|+.++|||.||..|+..| ...||+||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 356889999999999999999999999999874 6799999998863
No 48
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.16 E-value=1.4e-11 Score=92.91 Aligned_cols=47 Identities=23% Similarity=0.613 Sum_probs=41.3
Q ss_pred CCCcceeeccccCcc------------------eecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 137 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~------------------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.+..|+||++.+.++ +.++|||.||..||.+|+..+.+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 457899999998753 45799999999999999999999999999864
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.15 E-value=8.5e-12 Score=98.72 Aligned_cols=50 Identities=20% Similarity=0.484 Sum_probs=44.8
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccC-CCCcccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLR 183 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~~~ 183 (237)
..+.+..|+||++.+.+|+.++|||.||..||.+|+... ..||.||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 456778999999999999999999999999999999854 59999999864
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.12 E-value=3.5e-11 Score=103.74 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=45.5
Q ss_pred ccCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563 133 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 184 (237)
Q Consensus 133 ~~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~ 184 (237)
.+...++.|+||++.+.+||+++|||+||..||.+|+.. ..+||+||.+++.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 344567899999999999999999999999999999985 4559999999863
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=9.9e-12 Score=95.80 Aligned_cols=53 Identities=26% Similarity=0.702 Sum_probs=46.5
Q ss_pred CCCCcceeeccccCcc-------eecCCCCcccHhHHHHhhccCCCCccccccccccCCC
Q 026563 136 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSG 188 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~ 188 (237)
+....|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++......
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcce
Confidence 4568899999999876 8889999999999999999999999999998755443
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.12 E-value=1.3e-11 Score=84.62 Aligned_cols=49 Identities=24% Similarity=0.604 Sum_probs=43.8
Q ss_pred CCCCcceeeccccCcceec--CCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563 136 EREEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~--~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+++..|.||++...+++.+ +|||. ||..|+..|...+..||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 3457899999999999876 99999 8999999999988999999999863
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.09 E-value=1.9e-11 Score=86.04 Aligned_cols=44 Identities=30% Similarity=0.745 Sum_probs=40.5
Q ss_pred CCCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 34689999999999999999999 999999998 899999999874
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.07 E-value=2.9e-11 Score=82.62 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=42.9
Q ss_pred CCCcceeeccccCcceec--CCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563 137 REEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~--~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
.+..|.||++...+++++ +|||. ||..|+.+|...+..||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 457899999999988776 99998 9999999999888999999999863
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=4.1e-11 Score=88.25 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=42.0
Q ss_pred CCCCcceeeccccCcceecC-CCCcccHhHHHHhhcc------CCCCcc--cccc-cc
Q 026563 136 EREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRAR------SQSCPF--CRDS-LR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~-CgH~FC~~Ci~~w~~~------~~~CP~--CR~~-~~ 183 (237)
..++.|+||++.+.+||.++ |||+||..||.+|+.. ..+||+ |+.. +.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 46789999999999999985 9999999999999974 369999 9876 55
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.05 E-value=6.8e-11 Score=107.52 Aligned_cols=49 Identities=33% Similarity=0.845 Sum_probs=44.9
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCcccccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV 185 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~ 185 (237)
....|+||++.+.+++.++|||.||..|+..|.. ....||+||.++...
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3478999999999999999999999999999998 789999999998753
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.01 E-value=1.1e-10 Score=95.90 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=45.4
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 184 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~ 184 (237)
....++.|+||++.+.+||.++|||+||..||..|+.. ..+||+||.++..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 44577999999999999999999999999999999985 3579999998874
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.00 E-value=1.1e-10 Score=94.60 Aligned_cols=51 Identities=27% Similarity=0.553 Sum_probs=45.5
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 184 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~ 184 (237)
..++++.|+||++.+.+|+.++|||.||..|+.+|+.. ..+||.||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45677899999999999999999999999999999974 4599999998864
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.1e-10 Score=82.34 Aligned_cols=43 Identities=30% Similarity=0.760 Sum_probs=38.7
Q ss_pred CCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+..|+||++.+.+++.++|||. ||..|+... ..||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 4679999999999999999999 999999653 899999999874
No 60
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.97 E-value=6.4e-11 Score=90.83 Aligned_cols=47 Identities=23% Similarity=0.613 Sum_probs=0.9
Q ss_pred CCCcceeeccccCcc------------------eecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 137 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~------------------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.+..|+||++.+.++ +.++|+|.||..||.+|+..+.+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 357899999998752 23589999999999999999999999999864
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=9.2e-10 Score=76.28 Aligned_cols=45 Identities=31% Similarity=0.804 Sum_probs=40.3
Q ss_pred CCCCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+++..|.||++...++++++|||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 456789999999999999999999 99999985 4899999999874
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.87 E-value=3.8e-10 Score=80.50 Aligned_cols=44 Identities=32% Similarity=0.709 Sum_probs=39.8
Q ss_pred CCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCcccccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV 185 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~~ 185 (237)
+..|.||++.+.+++.++|||. ||..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4689999999999999999999 999999987 4999999998753
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.1e-09 Score=78.41 Aligned_cols=48 Identities=21% Similarity=0.583 Sum_probs=40.4
Q ss_pred CCCCcceeeccccC--cceecCCC-----CcccHhHHHHhhccC--CCCcccccccc
Q 026563 136 EREEECGICLEICC--KIVLPDCN-----HSMCMRCYRNWRARS--QSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~--~~v~~~Cg-----H~FC~~Ci~~w~~~~--~~CP~CR~~~~ 183 (237)
..+..|.||++.+. ++++++|+ |.||..||.+|+..+ .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 45678999998774 45678896 999999999999854 69999999886
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.85 E-value=9.3e-10 Score=94.88 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=44.5
Q ss_pred cCCCCCcceeeccccCccee-cCCCCcccHhHHHHhhcc--CCCCcc--cccccccc
Q 026563 134 DIEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRAR--SQSCPF--CRDSLRRV 185 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~--~~~CP~--CR~~~~~~ 185 (237)
....+..|+||++.|.+||. ..|||+||+.||..|+.. ...||. ||..+...
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 34566899999999999998 499999999999999874 368999 99987643
No 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=4.7e-09 Score=73.96 Aligned_cols=48 Identities=21% Similarity=0.515 Sum_probs=40.4
Q ss_pred CCCcceeeccccCcce-ecCCCCcccHhHHHHhhccC--CCCccccccccc
Q 026563 137 REEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARS--QSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v-~~~CgH~FC~~Ci~~w~~~~--~~CP~CR~~~~~ 184 (237)
....|+||.+.+.... -..|+|.||..||.+|+..+ .+||+||.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4478999999988543 35899999999999999966 899999988763
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.73 E-value=2.3e-09 Score=72.74 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=44.3
Q ss_pred CCcceeeccccCcceec-CCCCcccHhHHHHhhccCCCCccccccccccCC
Q 026563 138 EEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 187 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~ 187 (237)
.+.|+||.+.+.+|+.+ +|||.|++.||.+|+..+.+||+++.++...+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 36799999999999998 999999999999999987889999999875433
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.70 E-value=1.9e-09 Score=96.92 Aligned_cols=45 Identities=27% Similarity=0.846 Sum_probs=41.2
Q ss_pred CCCCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 356789999999999999999999 999999988 799999999874
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=1.3e-08 Score=74.38 Aligned_cols=45 Identities=22% Similarity=0.592 Sum_probs=37.0
Q ss_pred CCCcceeeccccCccee---cCCCCcccHhHHHHhhcc--------CCCCcc--cccc
Q 026563 137 REEECGICLEICCKIVL---PDCNHSMCMRCYRNWRAR--------SQSCPF--CRDS 181 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~---~~CgH~FC~~Ci~~w~~~--------~~~CP~--CR~~ 181 (237)
....|+||++.+..+.. .+|||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46789999999887643 379999999999998761 358999 9987
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.38 E-value=6.2e-08 Score=86.38 Aligned_cols=48 Identities=25% Similarity=0.599 Sum_probs=39.0
Q ss_pred CCCCcceeeccccCc-ce-------ecCCCCcccHhHHHHhhccC-----------CCCcccccccc
Q 026563 136 EREEECGICLEICCK-IV-------LPDCNHSMCMRCYRNWRARS-----------QSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~-~v-------~~~CgH~FC~~Ci~~w~~~~-----------~~CP~CR~~~~ 183 (237)
+...+|+||++.+.+ .. .+.|||.||..|+.+|+... ..||.||.+++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 355789999998876 21 24799999999999999732 58999999886
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.35 E-value=2.8e-07 Score=62.13 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=39.4
Q ss_pred CCCCcceeeccccCcceecCCC--C---cccHhHHHHhhc--cCCCCcccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCN--H---SMCMRCYRNWRA--RSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~Cg--H---~FC~~Ci~~w~~--~~~~CP~CR~~~~ 183 (237)
+.+..|.||++...++.+.||. | .||..|+.+|+. ++.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999876666667865 4 799999999987 4789999998875
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.21 E-value=5.1e-07 Score=66.52 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=39.2
Q ss_pred cceeeccccCc-ceecCCCCcccHhHHHHhhc-cCCCCccccccccccC
Q 026563 140 ECGICLEICCK-IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN 186 (237)
Q Consensus 140 ~C~IC~~~~~~-~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~~ 186 (237)
.|++|--++.. ....||+|.||.+|+..|.+ ..++||.|+.++.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 58888877775 46688999999999999975 6799999999987543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.45 E-value=8.4e-05 Score=63.30 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=39.0
Q ss_pred CCcceeeccccCccee-cCCCCcccHhHHHHhhcc--CCCCccccccccc
Q 026563 138 EEECGICLEICCKIVL-PDCNHSMCMRCYRNWRAR--SQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~--~~~CP~CR~~~~~ 184 (237)
-..|.||.+....... .+|+|.||..|+..|+.. +..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 5689999998886543 569999999999999874 4599999887653
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.19 E-value=0.0016 Score=47.40 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=27.0
Q ss_pred CCCcceeeccc-cCccee--cCCCCcccHhHHHHh
Q 026563 137 REEECGICLEI-CCKIVL--PDCNHSMCMRCYRNW 168 (237)
Q Consensus 137 ~~~~C~IC~~~-~~~~v~--~~CgH~FC~~Ci~~w 168 (237)
++..|+||.+. +.+++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35789999975 667777 899999999999983
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.87 E-value=0.012 Score=42.61 Aligned_cols=47 Identities=28% Similarity=0.589 Sum_probs=37.8
Q ss_pred CCCcceeeccccCcceecCCC-CcccHhHHHHhhccCCCCcccccccccc
Q 026563 137 REEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRV 185 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~Cg-H~FC~~Ci~~w~~~~~~CP~CR~~~~~~ 185 (237)
.-..|..|+-... .+..|. |..|..|+.-.+..+..||+|..++...
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3467999976554 344575 9999999999999999999999998743
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.07 E-value=0.06 Score=53.88 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=46.2
Q ss_pred cCCCCCcceeeccccCcceecCCC-CcccHhHHHHhhccCCCCcccccccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRV 185 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~Cg-H~FC~~Ci~~w~~~~~~CP~CR~~~~~~ 185 (237)
+.-++..|||-.+.+.+||+++-| +++-+.+|.+|+..+.+||+=|.+++..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 345678999999999999999998 5899999999999899999999988743
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=85.92 E-value=0.59 Score=32.79 Aligned_cols=43 Identities=26% Similarity=0.498 Sum_probs=32.1
Q ss_pred CCCCcceeeccccCcceecCC----CCcccHhHHHHhhc-----cCCCCccc
Q 026563 136 EREEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA-----RSQSCPFC 178 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~C----gH~FC~~Ci~~w~~-----~~~~CP~C 178 (237)
...+.|.+|.+.+++.-...| +|.||.-|-+..++ ....||.-
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 456899999999998644444 68999999988876 24455544
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=83.67 E-value=0.95 Score=30.34 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=32.1
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhc----cCCCCccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 182 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----~~~~CP~CR~~~ 182 (237)
....|.||.+.-.-..--.|...||..|+...+. ..=.||.|+...
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 4567999986433222246888999999987665 345899997653
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.97 E-value=5.8 Score=28.23 Aligned_cols=48 Identities=27% Similarity=0.720 Sum_probs=36.3
Q ss_pred CCCcceeeccccC-----cce--ecCCCCcccHhHHHH-hhccCCCCccccccccc
Q 026563 137 REEECGICLEICC-----KIV--LPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRR 184 (237)
Q Consensus 137 ~~~~C~IC~~~~~-----~~v--~~~CgH~FC~~Ci~~-w~~~~~~CP~CR~~~~~ 184 (237)
....|.||-+..- ++. --.|+-..|+.|++- ....++.||-|+...++
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4468999998754 122 235888899999965 55589999999999874
No 79
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=76.04 E-value=0.37 Score=33.53 Aligned_cols=20 Identities=20% Similarity=0.835 Sum_probs=17.1
Q ss_pred CCCCcccHhHHHHhhccCCCCc
Q 026563 155 DCNHSMCMRCYRNWRARSQSCP 176 (237)
Q Consensus 155 ~CgH~FC~~Ci~~w~~~~~~CP 176 (237)
.|||.||..|-..|.. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 7999999999999976 5664
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=74.97 E-value=1.3 Score=36.15 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=31.7
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHHhhc----cCCCCccccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 182 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----~~~~CP~CR~~~ 182 (237)
..+..|.+|...-.-..--.|...||..|+.+-+. ..-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 35577999986432112245788899999876544 346899998654
No 81
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=73.76 E-value=2.6 Score=27.63 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=30.2
Q ss_pred CcceeeccccCcce---ecCCCCcccHhHHHHhhccCCCCccc
Q 026563 139 EECGICLEICCKIV---LPDCNHSMCMRCYRNWRARSQSCPFC 178 (237)
Q Consensus 139 ~~C~IC~~~~~~~v---~~~CgH~FC~~Ci~~w~~~~~~CP~C 178 (237)
..|--|...+.+.. -+.|++.||.+|=.=..+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45888988886532 47899999999954444566789987
No 82
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=73.45 E-value=0.14 Score=38.77 Aligned_cols=47 Identities=21% Similarity=0.494 Sum_probs=30.4
Q ss_pred CCCCcceeeccccCcc----eecCCCCcccHhHHHHhhccCCCCccccccc
Q 026563 136 EREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~ 182 (237)
.....|..|...|.-. .--.||..||..|..........|-.|-..+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 3456899999988732 3368999999999766554566788885543
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=73.23 E-value=2.3 Score=33.93 Aligned_cols=46 Identities=22% Similarity=0.453 Sum_probs=31.0
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhc----cCCCCccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 182 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----~~~~CP~CR~~~ 182 (237)
.+..|.+|...-.-..--.|.-.||..|+.+-+. ..-.||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4567999986532222245778899999866544 345799998654
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=70.96 E-value=2.8 Score=27.34 Aligned_cols=47 Identities=21% Similarity=0.504 Sum_probs=31.1
Q ss_pred cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc----cCCCCccccc
Q 026563 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRD 180 (237)
Q Consensus 134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----~~~~CP~CR~ 180 (237)
+...+..|.+|...-.-..--.|...||..|+..-+. ..-.||.|+.
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456678999987422112245777899999976433 4568999964
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=67.91 E-value=1.7 Score=28.41 Aligned_cols=46 Identities=20% Similarity=0.366 Sum_probs=29.9
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHHhhc----cCCCCcccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 181 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----~~~~CP~CR~~ 181 (237)
..+..|.+|.+.-.-..--.|...||..|+..-+. ..-.||.|+..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45678999986432122245777899999875333 34579999754
No 86
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=63.20 E-value=5 Score=32.26 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=29.4
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhc----cCCCCccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 182 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----~~~~CP~CR~~~ 182 (237)
+..|.+|.+.-.-..--.|...||..|+.+=+. ..-.||.|+..-
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 356889986533222245777899999865333 345899998653
No 87
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=62.62 E-value=14 Score=28.52 Aligned_cols=46 Identities=22% Similarity=0.442 Sum_probs=32.0
Q ss_pred CCCCCcceeeccccCcceecCCCCcccHhHHHHhhc-----------cCCCCccccc
Q 026563 135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-----------RSQSCPFCRD 180 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-----------~~~~CP~CR~ 180 (237)
...+..|.+|.+--.-..--.|-..||..|+.+-+. ..-.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345688999988554322346888899999986442 3457999963
No 88
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=60.55 E-value=12 Score=28.28 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=30.6
Q ss_pred CCCCCcceeeccccCcceecCCCCcccHhHHHHhh-----------ccCCCCccccc
Q 026563 135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWR-----------ARSQSCPFCRD 180 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~-----------~~~~~CP~CR~ 180 (237)
...+..|.+|.+--.-..--.|-..||..|+.+-+ ...=.|++|+.
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34567799998753322223688899999998642 13358999954
No 89
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.09 E-value=3.6 Score=30.91 Aligned_cols=31 Identities=16% Similarity=0.426 Sum_probs=23.2
Q ss_pred CCCcceeeccccCcc----eecCCCCcccHhHHHH
Q 026563 137 REEECGICLEICCKI----VLPDCNHSMCMRCYRN 167 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~ 167 (237)
....|.+|...|.-. .--.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 346799999988732 3357999999999654
No 90
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=58.87 E-value=4.6 Score=28.05 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=24.4
Q ss_pred CCCCcceeeccccCcc----eecCCCCcccHhHHHHh
Q 026563 136 EREEECGICLEICCKI----VLPDCNHSMCMRCYRNW 168 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~w 168 (237)
.+...|.+|...|.-. ---.||+.||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456899999988732 23579999999997553
No 91
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=58.50 E-value=4.2 Score=28.71 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=24.0
Q ss_pred CCCcceeeccccCcc----eecCCCCcccHhHHHHh
Q 026563 137 REEECGICLEICCKI----VLPDCNHSMCMRCYRNW 168 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~w 168 (237)
....|.+|...|.-. .-..||+.||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 346799999887632 33679999999997654
No 92
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=58.49 E-value=14 Score=33.24 Aligned_cols=61 Identities=21% Similarity=0.466 Sum_probs=38.1
Q ss_pred HhHHHHhhhcccccCCCccccCCCCCcceeeccccCccee--cCCCCcccHhHHHHhhc----------cCCCCccccc
Q 026563 114 ICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVL--PDCNHSMCMRCYRNWRA----------RSQSCPFCRD 180 (237)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~v~--~~CgH~FC~~Ci~~w~~----------~~~~CP~CR~ 180 (237)
.|.+.|...+-. ..+...+..|.+|-+--.-..- .+|...||..||...+. ..=.|=+|..
T Consensus 75 ~Ck~~y~~~~f~------~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 75 PCKDKFLDALFL------YDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp HHHHHHHTTTTC------BCSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred HHHHHHhccCcc------cCCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 455556555421 1223456789999875432222 37889999999999875 2347877854
No 93
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.72 E-value=1.8 Score=28.43 Aligned_cols=32 Identities=28% Similarity=0.672 Sum_probs=21.6
Q ss_pred CcceeeccccCcc------eecC--CCCcccHhHHHHhhc
Q 026563 139 EECGICLEICCKI------VLPD--CNHSMCMRCYRNWRA 170 (237)
Q Consensus 139 ~~C~IC~~~~~~~------v~~~--CgH~FC~~Ci~~w~~ 170 (237)
..||-|...++.. .-.. |+|.||..|..+|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 5688888777642 2223 778888888777765
No 94
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.49 E-value=2 Score=27.53 Aligned_cols=45 Identities=20% Similarity=0.475 Sum_probs=28.2
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHHhhc----cCCCCccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRD 180 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----~~~~CP~CR~ 180 (237)
..+..|.+|...-.-..--.|...||..|+.+-+. ..-.||.|+.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45678999987532122246777899999875333 2345777753
No 95
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=57.31 E-value=4.6 Score=27.92 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=23.3
Q ss_pred CCCcceeeccccCcc----eecCCCCcccHhHHHH
Q 026563 137 REEECGICLEICCKI----VLPDCNHSMCMRCYRN 167 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~ 167 (237)
+...|.+|...|.-. ---.||+.||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 345799999988732 2357999999999754
No 96
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=56.35 E-value=13 Score=26.23 Aligned_cols=34 Identities=18% Similarity=0.474 Sum_probs=23.4
Q ss_pred CCCCCcceeeccccCccee--cCCCCcccHhHHHHh
Q 026563 135 IEREEECGICLEICCKIVL--PDCNHSMCMRCYRNW 168 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~--~~CgH~FC~~Ci~~w 168 (237)
...+..|.||-..-..... --|+-.||..|+++-
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccc
Confidence 3467899999754332211 137889999999985
No 97
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=56.06 E-value=5.8 Score=26.73 Aligned_cols=30 Identities=20% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCcceeeccccCcc----eecCCCCcccHhHHHH
Q 026563 138 EEECGICLEICCKI----VLPDCNHSMCMRCYRN 167 (237)
Q Consensus 138 ~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~ 167 (237)
+..|.+|...|.-. ---.||+.||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 45899999988732 2257999999999643
No 98
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.59 E-value=5.5 Score=27.62 Aligned_cols=32 Identities=22% Similarity=0.542 Sum_probs=23.3
Q ss_pred CCCCcceeeccccCcc----eecCCCCcccHhHHHH
Q 026563 136 EREEECGICLEICCKI----VLPDCNHSMCMRCYRN 167 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~ 167 (237)
+....|.+|...|.-. ---.||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3446899999988632 2257999999999543
No 99
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=54.13 E-value=4.8 Score=33.00 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=24.7
Q ss_pred CCCCCcceeeccccCcc----eecCCCCcccHhHHHH
Q 026563 135 IEREEECGICLEICCKI----VLPDCNHSMCMRCYRN 167 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~ 167 (237)
..+...|.+|...|.-. ---.||+.||..|...
T Consensus 158 W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 158 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 34567999999988732 3357999999999654
No 100
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=53.88 E-value=8.8 Score=34.30 Aligned_cols=47 Identities=17% Similarity=0.397 Sum_probs=33.8
Q ss_pred CCCcceeeccccCccee-cCCCCcccHhH--HHHhhc--cCCCCcccccccc
Q 026563 137 REEECGICLEICCKIVL-PDCNHSMCMRC--YRNWRA--RSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~-~~CgH~FC~~C--i~~w~~--~~~~CP~CR~~~~ 183 (237)
-.+.|++-...+..|+. ..|.|.-|.+- +..... ..-.||+|...+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 44889999999998866 77999855442 333222 5679999988764
No 101
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.49 E-value=5.1 Score=33.08 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=25.3
Q ss_pred CCCCCcceeeccccCcc----eecCCCCcccHhHHHHh
Q 026563 135 IEREEECGICLEICCKI----VLPDCNHSMCMRCYRNW 168 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~w 168 (237)
..+...|.+|...|.-. .--.||+.||..|....
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cccCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 34457899999888732 33679999999997543
No 102
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=52.78 E-value=5 Score=29.09 Aligned_cols=12 Identities=25% Similarity=0.977 Sum_probs=10.7
Q ss_pred cccHhHHHHhhc
Q 026563 159 SMCMRCYRNWRA 170 (237)
Q Consensus 159 ~FC~~Ci~~w~~ 170 (237)
.||++|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999976
No 103
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=52.75 E-value=5 Score=29.14 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=10.7
Q ss_pred cccHhHHHHhhc
Q 026563 159 SMCMRCYRNWRA 170 (237)
Q Consensus 159 ~FC~~Ci~~w~~ 170 (237)
.||++|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999976
No 104
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=52.14 E-value=4.8 Score=29.53 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=18.6
Q ss_pred ceecCCCCcccHhHHHHhhccCCCCccccccc
Q 026563 151 IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182 (237)
Q Consensus 151 ~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~ 182 (237)
+.-.+||+.|+ .-+.....||.|++.-
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 34467999992 2234568999998764
No 105
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=50.88 E-value=11 Score=33.60 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=33.7
Q ss_pred CCCcceeeccccCccee-cCCCCcccHh--HHHHhhc--cCCCCcccccccc
Q 026563 137 REEECGICLEICCKIVL-PDCNHSMCMR--CYRNWRA--RSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~-~~CgH~FC~~--Ci~~w~~--~~~~CP~CR~~~~ 183 (237)
-.+.|++-...+..|+. ..|.|.-|-+ =+..... ..-.||+|.+.+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 34789999999988866 7899985543 3333222 4679999988775
No 106
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=50.86 E-value=2 Score=37.60 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=35.2
Q ss_pred CCCCcceeeccccCcceec----CCC--CcccHhHHHHhhccCCCCcccccc
Q 026563 136 EREEECGICLEICCKIVLP----DCN--HSMCMRCYRNWRARSQSCPFCRDS 181 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~----~Cg--H~FC~~Ci~~w~~~~~~CP~CR~~ 181 (237)
.....|++|-....-.++. .=| |.+|..|-.+|......||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567999999876644332 244 468999999999999999999765
No 107
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=50.69 E-value=7 Score=29.81 Aligned_cols=31 Identities=26% Similarity=0.629 Sum_probs=22.1
Q ss_pred CCCCcceeeccccCc-----ceecCCCCcccHhHHH
Q 026563 136 EREEECGICLEICCK-----IVLPDCNHSMCMRCYR 166 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~-----~v~~~CgH~FC~~Ci~ 166 (237)
..+..|.+|...+.- ..-..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 457889999998841 2446788888887743
No 108
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=50.58 E-value=3.3 Score=37.06 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred CCCcceeeccccCcc----eecCCCCcccHhHHHHhhc-------cCCCCcccccc
Q 026563 137 REEECGICLEICCKI----VLPDCNHSMCMRCYRNWRA-------RSQSCPFCRDS 181 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~w~~-------~~~~CP~CR~~ 181 (237)
....|.+|...|.-. .-..||+.||..|...... ....|-.|-..
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp --------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 356899999887632 3357999999999865432 23456666443
No 109
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=47.24 E-value=8.9 Score=26.91 Aligned_cols=49 Identities=24% Similarity=0.480 Sum_probs=32.2
Q ss_pred CCCCCcceeeccccC--ccee---cCCCCcccHhHHHHhhc--cCCCCcccccccc
Q 026563 135 IEREEECGICLEICC--KIVL---PDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 183 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~--~~v~---~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~ 183 (237)
.+.+..|.||...-. ...+ -.|.-.||..|+..-.. ..-.||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 356688999997641 1122 36777899999965322 4567999976544
No 110
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=46.23 E-value=7.6 Score=27.27 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCCcceeeccccCcc----eecCCCCcccHhHHHH
Q 026563 137 REEECGICLEICCKI----VLPDCNHSMCMRCYRN 167 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~ 167 (237)
....|.+|...|.-. ---.||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 446899999988732 2357999999999755
No 111
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=46.22 E-value=10 Score=27.78 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=35.3
Q ss_pred CcceeeccccCc---ceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 139 EECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 139 ~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+.|..|...+.+ .....=|..||..|..+.+.....|-.|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 678888888852 3445567889999998877655589999998873
No 112
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=45.79 E-value=4.5 Score=26.74 Aligned_cols=46 Identities=20% Similarity=0.466 Sum_probs=30.1
Q ss_pred CCCCcceeeccccCcceecCCCCcccHhHHHHhhc----cCCCCcccccc
Q 026563 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 181 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----~~~~CP~CR~~ 181 (237)
..+..|.||.+.-.-..--.|...||..|+.+-+. ..-.||.|...
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 35678999987532122246777899999875333 34579999653
No 113
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=45.79 E-value=20 Score=28.15 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=29.8
Q ss_pred CCCCcceeeccccCccee--cCCCCcccHhHHHHhhcc----------CCCCccccc
Q 026563 136 EREEECGICLEICCKIVL--PDCNHSMCMRCYRNWRAR----------SQSCPFCRD 180 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~--~~CgH~FC~~Ci~~w~~~----------~~~CP~CR~ 180 (237)
..+..|.||-+--.-..- .+|...||..||..++.. .=.|=+|..
T Consensus 77 G~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 346789999874321111 258889999999998762 235777753
No 114
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=44.56 E-value=2.2 Score=29.86 Aligned_cols=15 Identities=47% Similarity=1.604 Sum_probs=13.7
Q ss_pred cCCCCcccHhHHHHh
Q 026563 154 PDCNHSMCMRCYRNW 168 (237)
Q Consensus 154 ~~CgH~FC~~Ci~~w 168 (237)
+.|||.||..|-.+|
T Consensus 47 ~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 47 PQCHQTFCVRCKRQW 61 (86)
T ss_dssp TTTCCEECSSSCSBC
T ss_pred CCCCCccccccCCch
Confidence 569999999999999
No 115
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=44.20 E-value=8 Score=30.17 Aligned_cols=44 Identities=20% Similarity=0.445 Sum_probs=30.6
Q ss_pred CCCcceeeccccCc-----ceecCCCCcccHhHHHHhhc--cCCCCcccccc
Q 026563 137 REEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDS 181 (237)
Q Consensus 137 ~~~~C~IC~~~~~~-----~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~ 181 (237)
.+..|.+|...|.- ..-..|.|.+|..|-. |.. ..-.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 56899999998642 3457899999999962 332 23467777554
No 116
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=44.04 E-value=8.1 Score=27.99 Aligned_cols=43 Identities=16% Similarity=0.360 Sum_probs=28.8
Q ss_pred CCCCcceeeccccCc---ceecCCCCcccHhHHHHhhc----cCCCCccc
Q 026563 136 EREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA----RSQSCPFC 178 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~----~~~~CP~C 178 (237)
.++..|.+|.+.-.. ..-..|+..||..|+..... ..-.||.|
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC
Confidence 456789999876432 22267899999999976544 23455555
No 117
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.20 E-value=11 Score=26.65 Aligned_cols=47 Identities=15% Similarity=0.359 Sum_probs=30.8
Q ss_pred CCCCCcceeeccccCcceecCCCCcccHhHHHHhhc----cCCCCcccccc
Q 026563 135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 181 (237)
Q Consensus 135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----~~~~CP~CR~~ 181 (237)
...+..|.+|...-.-..--.|.-.||..|+.+=+. ..-.||.|+..
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345678999987532112235666799999866443 34579999754
No 118
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=42.80 E-value=4.8 Score=25.98 Aligned_cols=46 Identities=20% Similarity=0.492 Sum_probs=29.5
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhc----cCCCCccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 182 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----~~~~CP~CR~~~ 182 (237)
.+..|.+|...-.-..--.|...||..|+.+-+. ..-.||.|+...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4577999987532122246777899999875333 344688886544
No 119
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=42.61 E-value=10 Score=25.36 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=24.2
Q ss_pred CCCCcceeeccccCcceecCC-CCcccHhHHHHhh
Q 026563 136 EREEECGICLEICCKIVLPDC-NHSMCMRCYRNWR 169 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~~~C-gH~FC~~Ci~~w~ 169 (237)
++..-|.||.+.-. ..-..| |-.||..|..+-.
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 34567999998733 344778 7789999988764
No 120
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.44 E-value=16 Score=24.36 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=30.2
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
....|.-|...+...++..-+..||..| ..|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 4568999999887665555677777777 68999988875
No 121
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.96 E-value=7.4 Score=26.13 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=31.2
Q ss_pred CCCcceeeccccCcc-ee--cCCCCcccHhHHHHhhc----cCCCCcccccccc
Q 026563 137 REEECGICLEICCKI-VL--PDCNHSMCMRCYRNWRA----RSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~-v~--~~CgH~FC~~Ci~~w~~----~~~~CP~CR~~~~ 183 (237)
+...|.+|...-... .+ -.|.-.||..|+..-.. ..-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 445699998764332 22 35777899999865333 3568999987654
No 122
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.40 E-value=22 Score=22.93 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=28.0
Q ss_pred CCcceeeccccC--cceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~--~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
...|.-|...+. +.++..-|..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCC
Confidence 357999998887 345555677777776 77888888776
No 123
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.59 E-value=18 Score=23.75 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=24.9
Q ss_pred CcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|+-|...+...++..-+..+|.+| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 46777877776655555666666666 67777777764
No 124
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=38.00 E-value=7.3 Score=25.43 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=30.7
Q ss_pred CCCCcceeeccccC----ccee-cCCCCcccHhHHHHhh-------ccCCCCccccccc
Q 026563 136 EREEECGICLEICC----KIVL-PDCNHSMCMRCYRNWR-------ARSQSCPFCRDSL 182 (237)
Q Consensus 136 ~~~~~C~IC~~~~~----~~v~-~~CgH~FC~~Ci~~w~-------~~~~~CP~CR~~~ 182 (237)
..+..|.+|..... ..+. -.|.-.||..|+..-+ ...-.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 35678999997632 1222 4677889999986532 2345788886543
No 125
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.85 E-value=17 Score=24.89 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=29.7
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
....|..|...+....+..-|..||..| ..|-.|+.++.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCC
Confidence 3467999999887665555677777766 78999988886
No 126
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=36.96 E-value=16 Score=22.45 Aligned_cols=41 Identities=24% Similarity=0.648 Sum_probs=25.2
Q ss_pred cceeeccccCc--cee-cCCCCcccHhHHHHhhc----cCCCCccccc
Q 026563 140 ECGICLEICCK--IVL-PDCNHSMCMRCYRNWRA----RSQSCPFCRD 180 (237)
Q Consensus 140 ~C~IC~~~~~~--~v~-~~CgH~FC~~Ci~~w~~----~~~~CP~CR~ 180 (237)
.|.||...-.. .+. -.|...||..|+.+=+. ..-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 37777654321 111 36778899999965333 3456888865
No 127
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=36.06 E-value=12 Score=36.58 Aligned_cols=46 Identities=26% Similarity=0.618 Sum_probs=34.2
Q ss_pred CCcceeeccccCcc----------eecCCCCcc--------------------cHhHHHHhhc--------cCCCCcccc
Q 026563 138 EEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPFCR 179 (237)
Q Consensus 138 ~~~C~IC~~~~~~~----------v~~~CgH~F--------------------C~~Ci~~w~~--------~~~~CP~CR 179 (237)
--.|+-|+..+.+| ..++||-.| |..|-.++.. +...||.|-
T Consensus 106 ~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~CG 185 (772)
T 4g9i_A 106 IAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVCG 185 (772)
T ss_dssp CCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTTS
T ss_pred hhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccCC
Confidence 35799999887753 336677666 9999999865 357999996
Q ss_pred cccc
Q 026563 180 DSLR 183 (237)
Q Consensus 180 ~~~~ 183 (237)
-.+.
T Consensus 186 P~l~ 189 (772)
T 4g9i_A 186 PSYR 189 (772)
T ss_dssp CCEE
T ss_pred ceEE
Confidence 6554
No 128
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.92 E-value=18 Score=23.27 Aligned_cols=39 Identities=26% Similarity=0.517 Sum_probs=26.8
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
...|..|...+...++..-+..||.+| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecceEEEECcccccccC--------CEeCCCCCcCCC
Confidence 357888888777555544566666666 678888887763
No 129
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.80 E-value=29 Score=23.12 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=28.8
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
...|.-|...+....+..-|..+|..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccC
Confidence 467999998887655555676677666 78999988887
No 130
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.72 E-value=22 Score=24.24 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=29.8
Q ss_pred CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
....|.-|...+...++..-+..||..| ..|-.|+..+.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred cCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCC
Confidence 4467999999887655555677777777 78999988876
No 131
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.48 E-value=19 Score=23.93 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=27.2
Q ss_pred CcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|..|...+...++..-+..||.+| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 46888888877655555667666666 78888988875
No 132
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=34.35 E-value=17 Score=26.65 Aligned_cols=46 Identities=17% Similarity=0.350 Sum_probs=33.4
Q ss_pred CCcceeeccccCc---ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
-+.|..|...+.. .....=|..+|..|..+-+.....|..|..++.
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 4678888887752 334456778999998886654458999988875
No 133
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=34.27 E-value=12 Score=35.95 Aligned_cols=23 Identities=30% Similarity=0.879 Sum_probs=18.2
Q ss_pred ccHhHHHHhhc--------cCCCCccccccc
Q 026563 160 MCMRCYRNWRA--------RSQSCPFCRDSL 182 (237)
Q Consensus 160 FC~~Ci~~w~~--------~~~~CP~CR~~~ 182 (237)
+|..|-.++.. +...||.|--.+
T Consensus 69 mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 69 LCPACDKEYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp CCHHHHHHHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred CChHHHHHhCCCCCCcCcCCCCcCcccCccc
Confidence 39999999865 457999996655
No 134
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=34.01 E-value=17 Score=23.20 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=27.0
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
...|+.|...+....+..-|..+|..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCCcccCCEecceEEEECccccccCc--------CEECCCCCCCC
Confidence 356888888777555555566666666 77888888875
No 135
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.73 E-value=21 Score=22.87 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=25.1
Q ss_pred CcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|..|...+....+..-+..+|..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 46888887776554444566666665 67888887775
No 136
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=31.80 E-value=14 Score=36.10 Aligned_cols=45 Identities=24% Similarity=0.550 Sum_probs=32.9
Q ss_pred CcceeeccccCcc----------eecCCCCcc--------------------cHhHHHHhhc--------cCCCCccccc
Q 026563 139 EECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPFCRD 180 (237)
Q Consensus 139 ~~C~IC~~~~~~~----------v~~~CgH~F--------------------C~~Ci~~w~~--------~~~~CP~CR~ 180 (237)
-.|+-|+..+.+| ..++||-.| |..|-.++.. +...||.|--
T Consensus 112 a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~CGP 191 (761)
T 3vth_A 112 GVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDCGP 191 (761)
T ss_dssp CCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTTSC
T ss_pred cccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCccCC
Confidence 5799999887753 336677444 9999999865 3579999966
Q ss_pred ccc
Q 026563 181 SLR 183 (237)
Q Consensus 181 ~~~ 183 (237)
.+.
T Consensus 192 ~l~ 194 (761)
T 3vth_A 192 SLS 194 (761)
T ss_dssp CEE
T ss_pred eeE
Confidence 553
No 137
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=31.59 E-value=12 Score=29.59 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=26.9
Q ss_pred CcceeeccccCc---ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
+.|..|...+.. .....=|..||..|+.+-+.....|+.|..++.
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 566777666553 333345667777777665443235777776664
No 138
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.31 E-value=23 Score=22.95 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCcceeeccccCc----ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
...|.-|...+.. .++..-+..+|..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 3568888887764 34444566777766 67888887775
No 139
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=31.13 E-value=51 Score=23.74 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=20.4
Q ss_pred CCCcceeeccccC--------cce-ecCCCCcccHhHHH
Q 026563 137 REEECGICLEICC--------KIV-LPDCNHSMCMRCYR 166 (237)
Q Consensus 137 ~~~~C~IC~~~~~--------~~v-~~~CgH~FC~~Ci~ 166 (237)
....|.+|+..-. +.+ -..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4567888986421 112 25799999999994
No 140
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.89 E-value=20 Score=22.97 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=24.7
Q ss_pred CcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|.-|...+....+..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCc--------CEECCCCCCCC
Confidence 56888887766544444556666665 67888887775
No 141
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.62 E-value=28 Score=23.07 Aligned_cols=37 Identities=14% Similarity=0.377 Sum_probs=27.1
Q ss_pred CcceeeccccC--cceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~--~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|..|...+. +.++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CcCccCCcccccCceEEEECcccccccc--------CchhhCCCccC
Confidence 57999988887 444544567777666 78888988876
No 142
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.61 E-value=11 Score=26.69 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=31.5
Q ss_pred ccCCCCCcceeeccccCccee---cCCCCcccHhHHHHhhc----cCCCCcccccc
Q 026563 133 IDIEREEECGICLEICCKIVL---PDCNHSMCMRCYRNWRA----RSQSCPFCRDS 181 (237)
Q Consensus 133 ~~~~~~~~C~IC~~~~~~~v~---~~CgH~FC~~Ci~~w~~----~~~~CP~CR~~ 181 (237)
.+..++..|.||...-....+ -.|...||..|+.+=+. ..-.||.|+..
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 344556789999876432212 35777899999864332 34469999764
No 143
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.41 E-value=19 Score=23.96 Aligned_cols=38 Identities=21% Similarity=0.489 Sum_probs=26.3
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
...|+-|...+.+.++..-+..||..| .+|..|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecceeEEECCccccHHh--------cCcccCCCccC
Confidence 356888887777655544566666665 77888888775
No 144
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.54 E-value=18 Score=23.29 Aligned_cols=46 Identities=22% Similarity=0.492 Sum_probs=29.7
Q ss_pred CCCCcceeeccccCc---cee-cCCCCcccHhHHHHhhc-----cCCCCcccccc
Q 026563 136 EREEECGICLEICCK---IVL-PDCNHSMCMRCYRNWRA-----RSQSCPFCRDS 181 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~---~v~-~~CgH~FC~~Ci~~w~~-----~~~~CP~CR~~ 181 (237)
++...|++|.....+ .+. -.|..-||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345779999887642 222 35777789999743211 45789999764
No 145
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.47 E-value=23 Score=23.27 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=26.1
Q ss_pred CcceeeccccCc----ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|..|...+.. .++..-+..+|.+| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 568888887774 44444666677766 77888887775
No 146
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.10 E-value=21 Score=23.78 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=26.4
Q ss_pred CcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|..|...+...++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCC
Confidence 47888888777555544566666666 77888888775
No 147
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.46 E-value=13 Score=21.42 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=8.3
Q ss_pred CCCcccccccc
Q 026563 173 QSCPFCRDSLR 183 (237)
Q Consensus 173 ~~CP~CR~~~~ 183 (237)
..||+|.+.+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 57888877665
No 148
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=25.22 E-value=34 Score=20.34 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHhhc
Q 026563 4 SFKDSLKALEADIQ 17 (237)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (237)
.-+|++++||++|-
T Consensus 5 ~~~d~I~aiEQqiy 18 (40)
T 1gp8_A 5 VSAANKDAIRKQMD 18 (40)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 45799999999998
No 149
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.14 E-value=37 Score=24.52 Aligned_cols=44 Identities=20% Similarity=0.417 Sum_probs=32.7
Q ss_pred CCcceeeccccCc-ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~-~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
-+.|..|...+.. .....=|..+|..|..+.. ...|+.|..++.
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCC
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCC
Confidence 3678888887764 3334567889999987653 578999998887
No 150
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.06 E-value=24 Score=23.17 Aligned_cols=38 Identities=16% Similarity=0.376 Sum_probs=26.1
Q ss_pred CCcceeeccccC-cceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~-~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
...|..|...+. ...+..-+..+|..| ..|..|+.++.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccC
Confidence 357888988776 333334566666665 78888988876
No 151
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.97 E-value=31 Score=22.75 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=25.9
Q ss_pred CcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|..|...+....+..-+..+|..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCC
Confidence 56888888776555545566666666 67888888875
No 152
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=24.67 E-value=21 Score=27.59 Aligned_cols=26 Identities=15% Similarity=0.487 Sum_probs=16.7
Q ss_pred cCCCCcccHhHHHHhhccCCCCcccccccccc
Q 026563 154 PDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 185 (237)
Q Consensus 154 ~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~ 185 (237)
..|||.|=.. .....||.|..++.++
T Consensus 136 ~~Cg~~~~~~------~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 136 IGCGRKFSTL------PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp SSSCCEESSC------CGGGBCTTTCCBEEEC
T ss_pred CCCCCcccCC------CCCCcCCCCCCcceeC
Confidence 4677776432 2235899998887543
No 153
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.41 E-value=27 Score=22.43 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=25.6
Q ss_pred CcceeeccccCc--ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~--~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|..|...+.. .++..-|..+|..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccC--------CcccccCCccC
Confidence 478888888773 34444566666665 67888888775
No 154
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.35 E-value=5.7 Score=27.72 Aligned_cols=40 Identities=23% Similarity=0.642 Sum_probs=20.1
Q ss_pred CcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|+.|...+... =++..|..|-..+... ..||-|..++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~-afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQ-ALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEE-EECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCCc-ccCcchhhHHH
Confidence 4577776655421 1133455554443322 36666666654
No 155
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=24.11 E-value=27 Score=23.39 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=29.7
Q ss_pred CCCCCcceeecccc--C-ccee--cCCCCcccHhHHHHhhc--cCCCCccccc
Q 026563 135 IEREEECGICLEIC--C-KIVL--PDCNHSMCMRCYRNWRA--RSQSCPFCRD 180 (237)
Q Consensus 135 ~~~~~~C~IC~~~~--~-~~v~--~~CgH~FC~~Ci~~w~~--~~~~CP~CR~ 180 (237)
...+..|.||...- . ...+ -.|.-.||..|+..-.. ..-.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34568899998753 1 1222 46778899999864322 4457888854
No 156
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=23.99 E-value=51 Score=21.92 Aligned_cols=47 Identities=15% Similarity=0.427 Sum_probs=28.0
Q ss_pred CCCCcceeeccccCccee--cC--CC-CcccHhHHHHhh--ccCCCCcccccccc
Q 026563 136 EREEECGICLEICCKIVL--PD--CN-HSMCMRCYRNWR--ARSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~~v~--~~--Cg-H~FC~~Ci~~w~--~~~~~CP~CR~~~~ 183 (237)
++...| ||.......++ =+ |. ..||..|+.--. ...-.||.|+..-.
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcccc
Confidence 445667 89875432222 13 55 589999985211 14568999976543
No 157
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=23.68 E-value=19 Score=25.56 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=26.2
Q ss_pred CCcceeeccccCccee---cCCCCcccHhHHHHhhc---cCCCCccccc
Q 026563 138 EEECGICLEICCKIVL---PDCNHSMCMRCYRNWRA---RSQSCPFCRD 180 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~---~~CgH~FC~~Ci~~w~~---~~~~CP~CR~ 180 (237)
...| ||........+ -.|.-.||..|+..-.. ..-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3567 78765543322 35777899999854222 3468999963
No 158
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.51 E-value=5.7 Score=28.73 Aligned_cols=42 Identities=24% Similarity=0.471 Sum_probs=29.6
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
+..||.|...+... =++.+|..|-.. +.....||-|..++..
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred cccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHHH
Confidence 37899999876531 234458888554 3457899999998863
No 159
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=23.40 E-value=37 Score=24.69 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.0
Q ss_pred CCcceeeccccCcceecCCCCcccH
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCM 162 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~ 162 (237)
...|..|...-..-+-+.|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4679999877665677889999984
No 160
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.63 E-value=60 Score=24.82 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=28.4
Q ss_pred CCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
-+.|..|...+.......=|..||..|..+-+ ...|..|...+.
T Consensus 33 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 33 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp TSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred cCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccC
Confidence 36788887777643233456778888886643 356767766654
No 161
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=22.30 E-value=58 Score=21.92 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHhhc
Q 026563 4 SFKDSLKALEADIQ 17 (237)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (237)
.-+.+|-+||.+||
T Consensus 26 t~~~~l~~~e~~vq 39 (74)
T 1avy_A 26 TAKGNISSLQGDVQ 39 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhH
Confidence 45677889999999
No 162
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.27 E-value=28 Score=22.94 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=25.4
Q ss_pred CcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184 (237)
Q Consensus 139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~ 184 (237)
..|..|...+....+..-+..+|..| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTT--------CBCSSSCCBSCS
T ss_pred CccccCCCeecceeEEECCCeEecCc--------CChhhCCCCCCC
Confidence 46888887776544444555555555 778888888763
No 163
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.22 E-value=45 Score=22.06 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=25.6
Q ss_pred CcceeeccccC--cceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 139 EECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 139 ~~C~IC~~~~~--~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
..|..|...+. ..++..-+..+|..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccC
Confidence 47888888877 334433466666666 77888888776
No 164
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.69 E-value=44 Score=24.20 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=22.1
Q ss_pred CcceeeccccC--cceecCCCCcccHhHHHHhhccCCCCcccccc
Q 026563 139 EECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDS 181 (237)
Q Consensus 139 ~~C~IC~~~~~--~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~ 181 (237)
+.|..|...+. +.....=|..+|..|..+.+. ..|..|...
T Consensus 37 F~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~--~~~~~~~~~ 79 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK--INGGSGGSG 79 (123)
T ss_dssp CBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH--HHTCCCCCC
T ss_pred CccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc--cccCCCCCC
Confidence 55666666663 223334466677777766543 334444433
No 165
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.48 E-value=7.3 Score=27.31 Aligned_cols=47 Identities=13% Similarity=0.409 Sum_probs=31.7
Q ss_pred CCCcceeeccccC---ccee--cCCCCcccHhHHHHhhc--------cCCCCcccccccc
Q 026563 137 REEECGICLEICC---KIVL--PDCNHSMCMRCYRNWRA--------RSQSCPFCRDSLR 183 (237)
Q Consensus 137 ~~~~C~IC~~~~~---~~v~--~~CgH~FC~~Ci~~w~~--------~~~~CP~CR~~~~ 183 (237)
.+..|.+|...-. ..++ -.|...||..|+.+-+. ..-.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4578999997643 2222 35788899999875332 3458999976554
No 166
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.02 E-value=35 Score=24.91 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=18.3
Q ss_pred cCCCCcccHhHHHHhhccCC-CCccccccccccCCC
Q 026563 154 PDCNHSMCMRCYRNWRARSQ-SCPFCRDSLRRVNSG 188 (237)
Q Consensus 154 ~~CgH~FC~~Ci~~w~~~~~-~CP~CR~~~~~~~~~ 188 (237)
.+|||.|=. ..... .||.|..+..+....
T Consensus 77 ~~CG~~~e~------~~~~~~~CP~Cgs~~~~i~~G 106 (119)
T 2kdx_A 77 KDCSHVFKP------NALDYGVCEKCHSKNVIITQG 106 (119)
T ss_dssp SSSSCEECS------CCSTTCCCSSSSSCCCEEEES
T ss_pred CCCCCEEeC------CCCCCCcCccccCCCcEEecC
Confidence 467776654 12456 899998876544333
No 167
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.73 E-value=31 Score=22.58 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=21.7
Q ss_pred CcceeeccccCc-ceecCCCCcccH-hHHHHhhccCCCCccccc
Q 026563 139 EECGICLEICCK-IVLPDCNHSMCM-RCYRNWRARSQSCPFCRD 180 (237)
Q Consensus 139 ~~C~IC~~~~~~-~v~~~CgH~FC~-~Ci~~w~~~~~~CP~CR~ 180 (237)
+.|..|...+.. .....=|..+|. .|..+.+ ...|.-|..
T Consensus 28 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~~C~~C~~ 69 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GPKGFGRGG 69 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SCCCSSCCC
T ss_pred CCccccCccCCCCceECcCCeEeeCHHHHHHHh--CccCCCcCC
Confidence 566666666554 223334566777 4765543 345666643
No 168
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.72 E-value=33 Score=25.17 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=29.0
Q ss_pred CCcceeeccccCcc-eecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 138 EEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 138 ~~~C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
...|.-|-..+... ++..-|..+|..| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 46899999988765 3445677777776 88999998885
No 169
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.50 E-value=47 Score=22.16 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=27.6
Q ss_pred CCCCcceeeccccCc-ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563 136 EREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183 (237)
Q Consensus 136 ~~~~~C~IC~~~~~~-~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~ 183 (237)
.....|.-|-..+.. ..+..-+..+|..| ..|-.|+.++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCccccccc--------CCcCcCCCCcC
Confidence 345689999988763 23333566666666 78999988875
Done!